##fileformat=VCFv4.2
##ALT=<ID=NON_REF,Description="Represents any possible alternative allele at this location">
##FILTER=<ID=LowQual,Description="Low quality">
##FILTER=<ID=VQSRTrancheINDEL99.00to99.90,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -6.1349 <= x < -0.1401">
##FILTER=<ID=VQSRTrancheINDEL99.90to100.00+,Description="Truth sensitivity tranche level for INDEL model at VQS Lod < -38938.8343">
##FILTER=<ID=VQSRTrancheINDEL99.90to100.00,Description="Truth sensitivity tranche level for INDEL model at VQS Lod: -38938.8343 <= x < -6.1349">
##FILTER=<ID=VQSRTrancheSNP99.90to100.00+,Description="Truth sensitivity tranche level for SNP model at VQS Lod < -30420.8807">
##FILTER=<ID=VQSRTrancheSNP99.90to100.00,Description="Truth sensitivity tranche level for SNP model at VQS Lod: -30420.8807 <= x < -5.2779">
##FILTER=<ID=lowGQ,Description="GQ<20">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block">
##FORMAT=<ID=PGT,Number=1,Type=String,Description="Physical phasing haplotype information, describing how the alternate alleles are phased in relation to one another">
##FORMAT=<ID=PID,Number=1,Type=String,Description="Physical phasing ID information, where each unique ID within a given sample (but not across samples) connects records within a phasing group">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phasing set (typically the position of the first variant in the set)">
##FORMAT=<ID=RGQ,Number=1,Type=Integer,Description="Unconditional reference genotype confidence, encoded as a phred quality -10*log10 p(genotype call is wrong)">
##FORMAT=<ID=SB,Number=4,Type=Integer,Description="Per-sample component statistics which comprise the Fisher's Exact Test to detect strand bias.">
##GATKCommandLine=<ID=ApplyVQSR,CommandLine="ApplyVQSR  --recal-file /BiO/BioProjects/TBO200598-Human-WES-200830/result/12_gatk4_variantrecalibrator_snp/multisample/multisample.vqsr.SNP.table --tranches-file /BiO/BioProjects/TBO200598-Human-WES-200830/result/12_gatk4_variantrecalibrator_snp/multisample/multisample.vqsr.SNP.tranches --output /BiO/BioProjects/TBO200598-Human-WES-200830/result/13_gatk4_applyvqsr_snp/multisample//multisample.vqsr.SNP.vcf.gz --truth-sensitivity-filter-level 99.5 --mode SNP --variant /BiO/BioProjects/TBO200598-Human-WES-200830/result/11_gatk4_genotypegvcfs/multisample/AllgVCFsGenotyped.multisample.vcf.gz --intervals /BiO/BioPeople/dskim/gatk4-pipeline/BioResources/hg19/target_region/SureSelect_Human_All_Exon_V6.flank_200bp.bed --reference /BiO/BioPeople/dskim/gatk4-pipeline/BioResources/hg19/hg19.fa --tmp-dir /BiO/BioProjects/TBO200598-Human-WES-200830/result/13_gatk4_applyvqsr_snp/multisample/tmp/  --use-allele-specific-annotations false --ignore-all-filters false --exclude-filtered false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false",Version="4.1.3.0",Date="August 31, 2020 2:15:01 PM KST">
##GATKCommandLine=<ID=SelectVariants,CommandLine="SelectVariants  --output /BiO/BioProjects/TBO200598-Human-WES-200830/result/18_gatk4_selectvariants/TN2008D0478//TN2008D0478.vcf.gz --sample-name TN2008D0478 --exclude-non-variants true --exclude-filtered true --remove-unused-alternates true --variant /BiO/BioProjects/TBO200598-Human-WES-200830/result/17_gatk4_variantfiltration/multisample/multisample.vcf.gz --reference /BiO/BioPeople/dskim/gatk4-pipeline/BioResources/hg19/hg19.fa --tmp-dir /BiO/BioProjects/TBO200598-Human-WES-200830/result/18_gatk4_selectvariants/TN2008D0478/tmp/  --invertSelect false --preserve-alleles false --restrict-alleles-to ALL --keep-original-ac false --keep-original-dp false --mendelian-violation false --invert-mendelian-violation false --mendelian-violation-qual-threshold 0.0 --select-random-fraction 0.0 --remove-fraction-genotypes 0.0 --fully-decode false --max-indel-size 2147483647 --min-indel-size 0 --max-filtered-genotypes 2147483647 --min-filtered-genotypes 0 --max-fraction-filtered-genotypes 1.0 --min-fraction-filtered-genotypes 0.0 --max-nocall-number 2147483647 --max-nocall-fraction 1.0 --set-filtered-gt-to-nocall false --allow-nonoverlapping-command-line-samples false --suppress-reference-path false --interval-set-rule UNION --interval-padding 0 --interval-exclusion-padding 0 --interval-merging-rule ALL --read-validation-stringency SILENT --seconds-between-progress-updates 10.0 --disable-sequence-dictionary-validation false --create-output-bam-index true --create-output-bam-md5 false --create-output-variant-index true --create-output-variant-md5 false --lenient false --add-output-sam-program-record true --add-output-vcf-command-line true --cloud-prefetch-buffer 40 --cloud-index-prefetch-buffer -1 --disable-bam-index-caching false --sites-only-vcf-output false --help false --version false --showHidden false --verbosity INFO --QUIET false --use-jdk-deflater false --use-jdk-inflater false --gcs-max-retries 20 --gcs-project-for-requester-pays  --disable-tool-default-read-filters false",Version="4.1.3.0",Date="August 31, 2020 2:23:29 PM KST">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##INFO=<ID=ExcessHet,Number=1,Type=Float,Description="Phred-scaled p-value for exact test of excess heterozygosity">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MLEAC,Number=A,Type=Integer,Description="Maximum likelihood expectation (MLE) for the allele counts (not necessarily the same as the AC), for each ALT allele, in the same order as listed">
##INFO=<ID=MLEAF,Number=A,Type=Float,Description="Maximum likelihood expectation (MLE) for the allele frequency (not necessarily the same as the AF), for each ALT allele, in the same order as listed">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=NEGATIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the negative training set of bad variants">
##INFO=<ID=POSITIVE_TRAIN_SITE,Number=0,Type=Flag,Description="This variant was used to build the positive training set of good variants">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=RAW_MQandDP,Number=2,Type=Integer,Description="Raw data (sum of squared MQ and total depth) for improved RMS Mapping Quality calculation. Incompatible with deprecated RAW_MQ formulation.">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SOR,Number=1,Type=Float,Description="Symmetric Odds Ratio of 2x2 contingency table to detect strand bias">
##INFO=<ID=VQSLOD,Number=1,Type=Float,Description="Log odds of being a true variant versus being false under the trained gaussian mixture model">
##INFO=<ID=culprit,Number=1,Type=String,Description="The annotation which was the worst performing in the Gaussian mixture model, likely the reason why the variant was filtered out">
##contig=<ID=chr1,length=249250621,assembly=hg19.fa>
##contig=<ID=chr2,length=243199373,assembly=hg19.fa>
##contig=<ID=chr3,length=198022430,assembly=hg19.fa>
##contig=<ID=chr4,length=191154276,assembly=hg19.fa>
##contig=<ID=chr5,length=180915260,assembly=hg19.fa>
##contig=<ID=chr6,length=171115067,assembly=hg19.fa>
##contig=<ID=chr7,length=159138663,assembly=hg19.fa>
##contig=<ID=chr8,length=146364022,assembly=hg19.fa>
##contig=<ID=chr9,length=141213431,assembly=hg19.fa>
##contig=<ID=chr10,length=135534747,assembly=hg19.fa>
##contig=<ID=chr11,length=135006516,assembly=hg19.fa>
##contig=<ID=chr12,length=133851895,assembly=hg19.fa>
##contig=<ID=chr13,length=115169878,assembly=hg19.fa>
##contig=<ID=chr14,length=107349540,assembly=hg19.fa>
##contig=<ID=chr15,length=102531392,assembly=hg19.fa>
##contig=<ID=chr16,length=90354753,assembly=hg19.fa>
##contig=<ID=chr17,length=81195210,assembly=hg19.fa>
##contig=<ID=chr18,length=78077248,assembly=hg19.fa>
##contig=<ID=chr19,length=59128983,assembly=hg19.fa>
##contig=<ID=chr20,length=63025520,assembly=hg19.fa>
##contig=<ID=chr21,length=48129895,assembly=hg19.fa>
##contig=<ID=chr22,length=51304566,assembly=hg19.fa>
##contig=<ID=chrX,length=155270560,assembly=hg19.fa>
##contig=<ID=chrY,length=59373566,assembly=hg19.fa>
##contig=<ID=chrM,length=16571,assembly=hg19.fa>
##reference=file:///BiO/BioPeople/dskim/gatk4-pipeline/BioResources/hg19/hg19.fa
##source=ApplyVQSR
##source=SelectVariants
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	TN2008D0478
chr1	14677	rs201327123	G	A	63.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673e+00;DB;DP=63;ExcessHet=3.0103;FS=1.668;MQ=42.63;MQRankSum=-1.809e+00;QD=1.00;ReadPosRankSum=-2.060e-01;SOR=0.293;VQSLOD=-4.577e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,9:63:72:72,0,1560
chr1	14907	rs79585140	A	G	10646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DB;DP=395;ExcessHet=6.9897;FS=5.022;MQ=48.33;MQRankSum=0.954;QD=12.83;ReadPosRankSum=1.53;SOR=0.408;VQSLOD=-2.131e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:259,136:395:99:2728,0,6161
chr1	14930	rs75454623	A	G	12220.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.710e-01;DB;DP=370;ExcessHet=6.9897;FS=1.778;MQ=49.73;MQRankSum=-5.290e-01;NEGATIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.786;SOR=0.546;VQSLOD=-3.045e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:231,139:370:99:3358,0,5186
chr1	14976	rs71252251	G	A	797.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=283;ExcessHet=3.9794;FS=3.850;MQ=47.35;MQRankSum=-7.270e-01;QD=1.89;ReadPosRankSum=0.882;SOR=1.078;VQSLOD=-3.237e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:256,27:283:11:11,0,6741
chr1	17538	rs200046632	C	A	325.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649e+00;DB;DP=114;ExcessHet=3.9794;FS=3.725;MQ=47.92;MQRankSum=1.81;QD=1.63;ReadPosRankSum=1.72;SOR=0.795;VQSLOD=-3.687e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,17:114:99:227,0,3067
chr1	17614	rs201057270	G	A	37.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e+00;DB;DP=68;ExcessHet=3.0103;FS=3.594;MQ=42.29;MQRankSum=0.584;QD=0.55;ReadPosRankSum=-3.980e-01;SOR=0.197;VQSLOD=-4.318e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,10:68:46:46,0,1699
chr1	17746	rs370884870	A	G	132.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=39.34;MQRankSum=0.671;QD=6.01;ReadPosRankSum=0.648;SOR=0.105;VQSLOD=-5.249e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,268
chr1	752721	rs3131972	A	G	3409.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.73;SOR=2.461;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:897,75,0
chr1	761957	rs59038458	A	AT	5703.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=39.65;QD=27.24;SOR=8.497;VQSLOD=6.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1410,105,0
chr1	762273	rs3115849	G	A	17667.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MQ=46.37;QD=31.66;SOR=1.059;VQSLOD=-3.656e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5336,501,0
chr1	762589	rs71507461	G	C	3117.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.881e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=51.14;MQRankSum=3.02;NEGATIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=2.00;SOR=0.551;VQSLOD=-3.556e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:762589_G_C:979,66,0:762589
chr1	762592	rs71507462	C	G	3149.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=50.79;MQRankSum=3.02;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=2.13;SOR=0.586;VQSLOD=-2.417e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:66:1|1:762589_G_C:979,66,0:762589
chr1	762601	rs71507463	T	C	2822.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.04;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=49.78;MQRankSum=2.21;NEGATIVE_TRAIN_SITE;QD=29.56;ReadPosRankSum=1.79;SOR=1.179;VQSLOD=-3.311e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:762589_G_C:900,60,0:762589
chr1	762632	rs61768173	T	A	1569.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=47.17;QD=30.62;SOR=3.767;VQSLOD=-2.388e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:497,39,0
chr1	792263	rs1044922	A	G	10451.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=44.52;QD=31.39;SOR=1.900;VQSLOD=-3.043e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3322,314,0
chr1	792480	rs2905036	C	T	10989.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=56.81;POSITIVE_TRAIN_SITE;QD=31.85;SOR=1.521;VQSLOD=4.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3803,365,0
chr1	808631	rs11240779	G	A	3045.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=26.80;SOR=3.232;VQSLOD=4.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:736,72,0
chr1	808922	rs6594027	G	A	26513.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.088;DB;DP=178;ExcessHet=3.0103;FS=0.000;MQ=56.84;MQRankSum=2.31;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=1.06;SOR=0.472;VQSLOD=-7.053e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,178:178:99:1|1:808922_G_A:8019,542,0:808922
chr1	808928	rs11240780	C	T	26961.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.810e-01;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=57.00;MQRankSum=2.35;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.02;ReadPosRankSum=0.766;SOR=0.456;VQSLOD=-1.261e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,186:186:99:1|1:808922_G_A:8244,563,0:808922
chr1	861630	rs2879816	G	A	2269.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.362e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.98;ReadPosRankSum=0.00;SOR=2.432;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1029,81,0
chr1	866319	rs9988021	G	A	5390.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.361;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2163,204,0
chr1	866511	rs60722469	C	CCCCT	2365.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.570e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.51;ReadPosRankSum=-3.910e-01;SOR=3.293;VQSLOD=4.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:86:1279,86,0
chr1	870903	rs13303094	T	C	1445.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=5.838;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:510,39,0
chr1	871334	rs4072383	G	T	6015.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.773e+00;DB;DP=63;ExcessHet=3.0103;FS=1.260;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.54;ReadPosRankSum=-1.320e-01;SOR=1.174;VQSLOD=6.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2603,190,0
chr1	874778	.	GCCTCCCCAGCCACGGTGAGGACCCACCCTGGCATGATCCCCCTCATCA	G	1389.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DP=100;ExcessHet=3.0103;FS=1.638;MQ=59.98;MQRankSum=-1.230e+00;QD=13.89;ReadPosRankSum=0.865;SOR=0.534;VQSLOD=0.410;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:61,39:100:99:1398,0,16247
chr1	874950	rs6143081	T	TCCCTGGAGGACC	6310.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=61;ExcessHet=3.0103;FS=4.468;MQ=60.00;MQRankSum=0.00;QD=28.08;ReadPosRankSum=-2.397e+00;SOR=1.244;VQSLOD=4.52;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2762,186,0
chr1	875159	rs141837153	AGCCAGTGGACGCCGACCT	A	121.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=23.23;SOR=2.833;VQSLOD=3.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:136,9,0
chr1	876499	rs4372192	A	G	4524.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=60;ExcessHet=3.0103;FS=3.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=0.380;SOR=0.412;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2051,180,0
chr1	877715	rs6605066	C	G	1237.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=18;ExcessHet=3.0103;FS=3.504;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.91;ReadPosRankSum=0.549;SOR=0.289;VQSLOD=6.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:549,54,0
chr1	877831	rs6672356	T	C	1130.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.26;SOR=0.880;VQSLOD=18.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:444,39,0
chr1	878906	.	CTTT	C	277.95	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.88;SOR=0.892;VQSLOD=3.46;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr1	879676	rs6605067	G	A	5607.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.54;DB;DP=51;ExcessHet=3.0103;FS=1.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.18;ReadPosRankSum=-1.770e-01;SOR=1.255;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2031,153,0
chr1	879687	rs2839	T	C	4709.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.66;DB;DP=42;ExcessHet=3.0103;FS=5.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.40;ReadPosRankSum=-3.560e-01;SOR=2.195;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1738,126,0
chr1	880238	rs3748592	A	G	8480.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=116;ExcessHet=3.0103;FS=4.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=0.584;SOR=0.524;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,114:116:99:3621,299,0
chr1	881627	rs2272757	G	A	3982.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.670e-01;DB;DP=77;ExcessHet=1.5490;FS=8.884;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.43;ReadPosRankSum=1.21;SOR=1.417;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2561,230,0
chr1	883625	rs4970378	A	G	11507.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=0.747;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4124,411,0
chr1	884091	rs60085302	C	CACCCTGGTCCCCCTGGTCCCTTTGGCCCTGCACCTGGCTGG	14990.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.298;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=32.73;ReadPosRankSum=-7.720e-01;SOR=0.628;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,155:156:99:6264,425,0
chr1	886788	rs10465242	G	A	8834.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.183;DB;DP=76;ExcessHet=3.0103;FS=3.653;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=0.825;SOR=0.407;VQSLOD=6.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2806,228,0
chr1	886817	rs10465241	C	T	6001.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.544e+00;DB;DP=58;ExcessHet=3.0103;FS=6.890;MQ=60.00;MQRankSum=0.00;QD=28.72;ReadPosRankSum=0.111;SOR=0.167;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2074,174,0
chr1	887560	rs3748595	A	C	14844.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.970e-01;DB;DP=185;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-1.347e+00;SOR=0.622;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:6064,554,0
chr1	887801	rs3828047	A	G	17959.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.87;DB;DP=175;ExcessHet=3.0103;FS=1.523;MQ=59.98;MQRankSum=-1.080e+00;POSITIVE_TRAIN_SITE;QD=28.60;ReadPosRankSum=0.307;SOR=0.924;VQSLOD=1.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,175:175:99:6295,526,0
chr1	888639	rs3748596	T	C	28445.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.151;DB;DP=391;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=1.07;SOR=0.657;VQSLOD=6.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,391:391:99:11988,1172,0
chr1	888659	rs3748597	T	C	29198.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.240e-01;DB;DP=404;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=-9.660e-01;POSITIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=-2.200e-02;SOR=0.645;VQSLOD=2.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,404:404:99:12249,1211,0
chr1	889158	rs13303056	G	C	6567.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;DB;DP=67;ExcessHet=3.0103;FS=10.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=0.897;SOR=0.112;VQSLOD=17.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,67:67:99:1|1:889158_G_C:3015,202,0:889158
chr1	889159	rs13302945	A	C	6567.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.104e+00;DB;DP=67;ExcessHet=3.0103;FS=10.888;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=0.626;SOR=0.103;VQSLOD=16.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,67:67:99:1|1:889158_G_C:3015,202,0:889158
chr1	889638	rs13303206	G	C	5955.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.02;DB;DP=50;ExcessHet=3.0103;FS=1.301;MQ=59.90;MQRankSum=0.970;POSITIVE_TRAIN_SITE;QD=32.19;ReadPosRankSum=-2.050e-01;SOR=0.562;VQSLOD=1.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2016,150,0
chr1	889713	rs13303051	C	A	1727.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.67;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.60;ReadPosRankSum=-6.350e-01;SOR=2.628;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:677,48,0
chr1	892745	rs13303227	G	A	2623.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.390e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=0.678;SOR=0.557;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:930,90,0
chr1	894573	rs13303010	G	A	32006.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=388;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=0.990;SOR=0.717;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,388:388:99:12990,1162,0
chr1	895755	rs113491766	A	AG	476.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.027;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.66;ReadPosRankSum=-8.520e-01;SOR=1.329;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:18:186,18,0
chr1	896271	rs112905931	C	T	105.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.61;SOR=1.179;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	897325	rs4970441	G	C	30321.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.120e-01;DB;DP=398;ExcessHet=3.0103;FS=1.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.549;SOR=0.863;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,398:398:99:12660,1193,0
chr1	897564	rs13303229	T	C	25231.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.60;DB;DP=278;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=0.192;SOR=0.711;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,278:278:99:9441,835,0
chr1	898323	rs6605071	T	C	14100.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.243e+00;DB;DP=162;ExcessHet=3.0103;FS=1.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=-8.720e-01;SOR=0.952;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5645,487,0
chr1	899928	rs6677386	G	C	2411.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=29.20;SOR=1.903;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,59:59:99:1|1:899928_G_C:2423,177,0:899928
chr1	899937	rs143296006	G	T	2087.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.55;SOR=2.687;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:899928_G_C:2099,144,0:899928
chr1	899938	rs147467971	G	C	2038.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.42;SOR=2.687;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:899928_G_C:2050,138,0:899928
chr1	899942	rs71509448	G	A	2013.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=28.53;SOR=2.636;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:899928_G_C:2025,135,0:899928
chr1	899989	rs6669071	A	C	439.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.23;SOR=4.615;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:30:1|1:899928_G_C:450,30,0:899928
chr1	900001	rs28754834	G	A	213.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=29.52;SOR=3.611;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:899928_G_C:225,15,0:899928
chr1	900009	rs6704181	C	G	121.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=33.47;SOR=2.833;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:899928_G_C:135,9,0:899928
chr1	900010	.	G	GC	123.74	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=32.91;SOR=2.833;VQSLOD=3.86;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:899928_G_C:135,9,0:899928
chr1	900285	rs4970435	C	T	9859.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=2.718;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,97:97:99:1|1:900285_C_T:4472,304,0:900285
chr1	900286	rs4970434	A	G	9859.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=2.710;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,101:101:99:1|1:900285_C_T:4472,304,0:900285
chr1	900717	rs142545439	CTTAT	C	1784.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.00;ReadPosRankSum=0.378;SOR=2.970;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:76:1|1:900717_CTTAT_C:1120,76,0:900717
chr1	900730	rs3935066	G	A	2806.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.59;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.27;ReadPosRankSum=0.741;SOR=3.352;VQSLOD=18.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:78:1|1:900717_CTTAT_C:1163,78,0:900717
chr1	905894	rs41285810	C	T	1882.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=151;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.212;SOR=0.725;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,74:151:99:1891,0,2035
chr1	906872	rs191942401	C	T	272.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=2.35;SOR=0.693;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:281,0,249
chr1	909073	rs3892467	C	T	3250.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571e+00;DB;DP=101;ExcessHet=3.9794;FS=2.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=1.79;SOR=0.905;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,59:101:99:1878,0,1257
chr1	909238	rs3829740	G	C	3530.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200e-02;DB;DP=61;ExcessHet=1.5490;FS=3.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.59;ReadPosRankSum=-5.840e-01;SOR=0.359;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,42:61:99:1157,0,456
chr1	909555	rs2340594	A	G	5050.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=2.251;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1422,120,0
chr1	909768	rs2340593	A	G	17191.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=0.712;VQSLOD=19.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,167:167:99:5296,501,0
chr1	911595	rs7417106	A	G	8037.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.805;DB;DP=119;ExcessHet=3.0103;FS=1.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-9.280e-01;SOR=0.864;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3470,357,0
chr1	912049	rs9803103	T	C	3186.23	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590e+00;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=-3.700e-01;SOR=0.807;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,71:71:99:1|1:912049_T_C:2400,213,0:912049
chr1	912103	rs9803017	G	A	1555.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.818;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.10;ReadPosRankSum=0.413;SOR=2.352;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:39:1|1:912049_T_C:579,39,0:912049
chr1	912125	rs200215758	CG	C	490.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.87;ReadPosRankSum=0.405;SOR=1.371;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:912049_T_C:315,21,0:912049
chr1	912127	.	C	A	464.63	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.98;SOR=5.549;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:21:1|1:912049_T_C:315,21,0:912049
chr1	914192	rs2340595	G	C	3526.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=1.418;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1214,117,0
chr1	914333	rs13302979	C	G	5389.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.25;DB;DP=107;ExcessHet=3.9794;FS=1.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=1.38;SOR=0.824;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3460,321,0
chr1	914852	rs13303368	G	C	9134.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=145;ExcessHet=3.9794;FS=1.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=1.47;SOR=0.856;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:5071,436,0
chr1	914876	rs13302983	T	C	16929.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.68;SOR=0.952;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,179:179:99:5576,537,0
chr1	914940	rs13303033	T	C	11671.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=217;ExcessHet=3.9794;FS=0.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=2.45;SOR=0.647;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,217:217:99:6651,651,0
chr1	915227	rs13303355	A	G	24164.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.790e-01;DB;DP=222;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.89;ReadPosRankSum=-5.370e-01;SOR=0.386;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,222:222:99:7216,666,0
chr1	916549	rs6660139	A	G	9250.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.640e+00;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=0.502;SOR=0.744;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4346,437,0
chr1	935222	rs2298214	C	A	5422.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.305e+00;DB;DP=111;ExcessHet=1.5490;FS=1.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=-2.200e-02;SOR=0.566;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3552,331,0
chr1	935459	rs3128113	A	G	624.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.76;SOR=4.294;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:267,21,0
chr1	935492	rs3121571	G	T	335.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=2.093;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr1	948846	rs3841266	T	TA	6409.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.08;SOR=2.186;VQSLOD=5.79;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:948846_T_TA:1920,129,0:948846
chr1	948870	rs4615788	C	G	8070.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=2.037;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,54:54:99:1|1:948846_T_TA:2294,162,0:948846
chr1	948921	rs15842	T	C	9922.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=1.593;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2292,207,0
chr1	949235	rs2465124	G	A	4327.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.08;SOR=0.749;VQSLOD=18.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1141,84,0
chr1	949654	rs8997	A	G	22472.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.65;DB;DP=286;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=1.03;SOR=0.652;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,286:286:99:9348,859,0
chr1	949925	rs2799070	C	T	3772.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.42;SOR=2.663;VQSLOD=19.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:979,84,0
chr1	957967	rs141489152	T	TTGTAGTCTGACCTGTGGTCTGAC	1953.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.65;SOR=4.664;VQSLOD=4.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:355,24,0
chr1	976514	rs79290478	C	A	2399.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.80;SOR=4.205;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:61:681,61,0
chr1	977156	.	CCGGCCAGTGCCAGGGTCGAGGTGGGCGGCTCCCCCGGGGGAGGGCTG	C	4648.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DP=37;ExcessHet=3.0103;FS=0.000;MQ=58.45;MQRankSum=-2.110e-01;QD=29.48;ReadPosRankSum=1.10;SOR=0.263;VQSLOD=-1.200e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1592,121,0
chr1	977330	rs2799066	T	C	12864.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.990e-01;DB;DP=117;ExcessHet=3.0103;FS=4.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.90;ReadPosRankSum=-1.612e+00;SOR=1.148;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3814,351,0
chr1	977570	rs2710876	G	A	9287.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=2.750;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3250,270,0
chr1	978603	rs35881187	CCT	C	5531.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.47;DB;DP=97;ExcessHet=1.5490;FS=2.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.81;ReadPosRankSum=1.78;SOR=0.904;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,97:97:99:4320,292,0
chr1	980460	rs3128097	G	A	5613.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.63;SOR=3.116;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1755,144,0
chr1	981087	rs3128098	A	G	31466.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.94;SOR=0.940;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,307:307:99:10016,921,0
chr1	981149	.	A	C	3549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DP=290;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.24;ReadPosRankSum=0.011;SOR=0.670;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,138:290:99:3558,0,4224
chr1	981931	rs2465128	A	G	24619.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=1.063;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,242:242:99:8179,725,0
chr1	982444	rs3128099	A	G	3383.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=4.202;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1064,75,0
chr1	982462	rs3128100	T	C	2282.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=3.575;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:683,54,0
chr1	982513	rs3128101	T	C	1496.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.36;SOR=0.693;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:453,33,0
chr1	982941	rs3128102	T	C	40366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=403;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=0.819;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,403:403:99:12995,1208,0
chr1	982994	rs10267	T	C	36834.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=367;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.95;SOR=1.006;VQSLOD=4.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,365:367:99:11989,1095,0
chr1	984147	rs199866572	CAAAAAAAAAAA	C	1584.22	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.606;DB;DP=23;ExcessHet=3.9794;FS=1.161;MQ=60.00;MQRankSum=0.00;QD=29.89;ReadPosRankSum=2.30;SOR=0.434;VQSLOD=5.03;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:72:1|1:984147_CAAAAAAAAAAA_C:1073,72,0:984147
chr1	984171	rs140904842	CAG	C	1628.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.149e+00;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.66;ReadPosRankSum=1.74;SOR=0.850;VQSLOD=5.23;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:984147_CAAAAAAAAAAA_C:1123,78,0:984147
chr1	984302	rs9442391	T	C	1205.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.328;DB;DP=30;ExcessHet=1.5490;FS=2.243;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=1.86;SOR=0.446;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:876,90,0
chr1	985266	rs2275813	C	T	11889.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=292;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-6.340e-01;SOR=0.726;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,292:292:99:8813,875,0
chr1	985446	rs2275812	G	T	1581.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.96;DB;DP=32;ExcessHet=3.9794;FS=14.135;MQ=59.59;MQRankSum=1.77;NEGATIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=2.55;SOR=0.074;VQSLOD=-2.177e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,28:32:3:0|1:985446_G_T:1041,0,3:985446
chr1	985449	rs2799067	G	A	1587.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=27;ExcessHet=3.9794;FS=12.157;MQ=59.50;MQRankSum=1.58;NEGATIVE_TRAIN_SITE;QD=26.02;ReadPosRankSum=1.75;SOR=0.073;VQSLOD=-2.032e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,23:27:3:0|1:985446_G_T:1041,0,3:985446
chr1	986443	rs2710887	C	T	14585.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=0.881;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4829,443,0
chr1	987200	rs9803031	C	T	19216.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=0.981;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:6105,531,0
chr1	988932	rs2710871	G	C	5437.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=-6.250e-01;SOR=0.795;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2346,228,0
chr1	990280	rs4275402	C	T	2544.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.94;SOR=0.867;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1126,112,0
chr1	990517	rs2710872	C	T	1487.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-9.380e-01;SOR=0.665;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:578,57,0
chr1	1006990	rs4326571	G	A	255.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.58;SOR=1.609;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	1007203	rs4633229	A	G	8166.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=5.902;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2863,207,0
chr1	1007432	rs4333796	G	A	10828.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.830e-01;DB;DP=248;ExcessHet=1.5490;FS=1.264;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=-5.290e-01;SOR=0.784;VQSLOD=6.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,248:248:99:7606,737,0
chr1	1018144	rs9442395	T	C	5703.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.010e-01;DB;DP=117;ExcessHet=1.5490;FS=1.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.429;SOR=0.791;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4116,351,0
chr1	1018562	rs9442371	C	T	1354.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=0.868;SOR=0.781;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:847,63,0
chr1	1019175	rs2298215	C	G	6246.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.180e-01;DB;DP=70;ExcessHet=3.0103;FS=6.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.04;ReadPosRankSum=1.09;SOR=0.319;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,70:70:99:1|1:1019175_C_G:3169,214,0:1019175
chr1	1019180	rs9442396	T	C	4397.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.511e+00;DB;DP=73;ExcessHet=1.5490;FS=6.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=0.698;SOR=0.309;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,73:73:99:1|1:1019175_C_G:3219,220,0:1019175
chr1	1020406	rs9442397	T	C	862.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.19;ReadPosRankSum=-8.420e-01;SOR=2.019;VQSLOD=3.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr1	1021415	rs3737728	A	G	4614.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693e+00;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=0.878;SOR=0.842;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1582,129,0
chr1	1022423	rs114326054	G	A	467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.296e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-2.204e+00;SOR=1.101;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:476,0,667
chr1	1026200	rs191823622	G	T	1142.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=66;ExcessHet=3.0103;FS=1.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-9.370e-01;SOR=1.036;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,37:66:99:1151,0,726
chr1	1026707	rs4074137	C	A	3401.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.210e-01;DB;DP=92;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=0.249;SOR=0.701;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2621,274,0
chr1	1026801	rs4562563	T	A	4672.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.794e+00;DB;DP=112;ExcessHet=1.5490;FS=3.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=0.781;SOR=0.728;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3465,336,0
chr1	1026913	rs115662838	C	T	748.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=75;ExcessHet=3.0103;FS=0.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=1.43;SOR=0.525;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,29:75:99:757,0,1277
chr1	1077962	rs55750860	C	T	1792.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=1.01;SOR=2.303;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:68:68,0,145
chr1	1103150	rs61768480	G	A	363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=26;ExcessHet=3.0103;FS=2.079;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=1.35;SOR=0.209;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:372,0,464
chr1	1103542	rs7518873	T	C	1148.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.55;POSITIVE_TRAIN_SITE;QD=29.27;SOR=3.841;VQSLOD=5.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:407,33,0
chr1	1115210	rs11260546	G	A	556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=33;ExcessHet=3.0103;FS=6.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.507;SOR=1.990;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,15:33:99:0|1:1115210_G_A:565,0,1311:1115210
chr1	1115213	rs11260547	G	T	556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322e+00;DB;DP=33;ExcessHet=3.0103;FS=6.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.398;SOR=1.990;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,15:33:99:0|1:1115210_G_A:565,0,1311:1115210
chr1	1116311	rs12096125	A	G	392.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=0.480;SOR=0.990;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:82:332,0,82
chr1	1117398	rs12097586	A	G	1265.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=42;ExcessHet=3.9794;FS=1.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.114;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:774,0,557
chr1	1118212	rs10907171	T	C	4662.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969e+00;DB;DP=111;ExcessHet=1.5490;FS=3.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=-1.780e-01;SOR=0.457;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,50:111:99:1221,0,1717
chr1	1119657	rs4560982	G	C	1038.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.908;SOR=0.465;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:201,0,528
chr1	1132785	rs2274792	C	T	91.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DB;DP=16;ExcessHet=3.0103;FS=6.317;MQ=60.00;MQRankSum=0.00;QD=5.70;ReadPosRankSum=0.183;SOR=3.258;VQSLOD=13.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:99:100,0,384
chr1	1132938	rs2274791	G	A	1838.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162e+00;DB;DP=142;ExcessHet=3.0103;FS=2.162;MQ=60.00;MQRankSum=0.00;QD=12.95;ReadPosRankSum=-1.854e+00;SOR=0.496;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,84:142:99:1847,0,1303
chr1	1132966	rs2274790	C	A	1421.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e+00;DB;DP=119;ExcessHet=3.0103;FS=4.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=1.30;SOR=1.107;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,61:119:99:1430,0,1475
chr1	1133077	rs2274789	A	G	963.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-2.536e+00;SOR=0.619;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,38:88:99:972,0,1238
chr1	1133254	rs12026794	G	A	971.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=0.914;SOR=0.746;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,26:51:99:0|1:1133254_G_A:980,0,1221:1133254
chr1	1133273	rs12031928	T	C	858.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=0.884;SOR=0.504;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,22:40:99:0|1:1133254_G_A:867,0,1035:1133254
chr1	1147422	rs17568	C	T	3382.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;DB;DP=149;ExcessHet=3.9794;FS=0.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=1.59;SOR=0.751;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,85:149:99:1855,0,1545
chr1	1152791	.	G	A	105.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.69;ReadPosRankSum=0.700;SOR=0.527;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:114,0,159
chr1	1158631	rs6603781	A	G	6620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.656e+00;DB;DP=87;ExcessHet=3.0103;FS=0.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=-1.155e+00;SOR=0.639;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2662,261,0
chr1	1159517	rs6702268	T	C	2659.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.344e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=-2.382e+00;SOR=0.524;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:824,66,0
chr1	1159540	rs6667998	G	A	157.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=15;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.061;SOR=1.609;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:166,0,375
chr1	1163804	rs7515488	C	T	3254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251e+00;DB;DP=238;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-6.130e-01;SOR=0.677;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,127:238:99:3263,0,2794
chr1	1190685	rs41303853	G	A	3210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=236;ExcessHet=3.0103;FS=4.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-5.220e-01;SOR=1.002;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,125:236:99:3219,0,2839
chr1	1196863	rs6659787	T	C	8693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.92;SOR=2.948;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2849,231,0
chr1	1219316	.	C	G	776.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.25;ReadPosRankSum=0.757;SOR=0.648;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,34:69:99:785,0,821
chr1	1225501	.	CT	C	1107.12	PASS	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=1.5490;FS=1.814;MQ=55.63;QD=27.00;SOR=0.420;VQSLOD=0.226;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:76:1|1:1225501_CT_C:1124,76,0:1225501
chr1	1225503	.	CCGTCCCCCGTGTCTCTGCTCCGTCCCGTGTCTCTGCTCCGTCCCGTGTCCCTGCTCCGTCCCGTGTCCCTGCT	C	1216.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.410;DP=26;ExcessHet=1.5490;FS=1.841;MQ=56.26;MQRankSum=-4.530e-01;QD=28.96;SOR=0.352;VQSLOD=0.038;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,25:26:71:1|1:1225501_CT_C:1233,71,0:1225501
chr1	1225612	rs1570866	G	A	2165.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.961;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=58.22;MQRankSum=-2.880e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.63;ReadPosRankSum=-1.627e+00;SOR=0.776;VQSLOD=0.342;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,55:56:99:1|1:1225501_CT_C:2182,152,0:1225501
chr1	1226102	rs2273274	G	A	2812.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=107;ExcessHet=3.9794;FS=6.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-5.020e-01;SOR=1.128;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,52:107:99:1492,0,1420
chr1	1226221	rs2273275	A	G	1173.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.760e-01;DB;DP=39;ExcessHet=3.9794;FS=0.788;MQ=60.00;MQRankSum=0.00;QD=12.75;ReadPosRankSum=-1.840e-01;SOR=0.590;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:469,0,622
chr1	1226348	rs586965	C	G	2323.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690e+00;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=59.67;MQRankSum=1.82;NEGATIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=2.88;SOR=0.719;VQSLOD=-9.837e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,40:78:99:1013,0,1075
chr1	1229340	.	T	TCGGGG	1267.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.810e-01;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.12;ReadPosRankSum=1.01;SOR=0.651;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,29:63:99:1276,0,1667
chr1	1229680	rs2477781	G	T	26099.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=430;ExcessHet=3.9794;FS=1.182;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=-1.015e+00;SOR=0.773;VQSLOD=6.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,427:430:99:14508,1274,0
chr1	1233332	rs111910661	C	T	2731.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364e+00;DB;DP=248;ExcessHet=3.0103;FS=3.483;MQ=60.00;MQRankSum=0.00;QD=11.01;ReadPosRankSum=0.738;SOR=0.846;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,120:248:99:2740,0,3096
chr1	1234169	rs112792787	G	A	1197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=93;ExcessHet=3.0103;FS=0.967;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.19;SOR=0.481;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,42:93:99:1206,0,1538
chr1	1237604	rs2296475	T	C	1121.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.94;SOR=4.332;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:306,21,0
chr1	1238583	rs145087137	G	A	1185.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=111;ExcessHet=3.0103;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=1.52;SOR=0.861;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,49:111:99:1194,0,1519
chr1	1239339	rs11260584	T	G	9592.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=3.660;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2599,222,0
chr1	1242288	rs115464315	T	G	50.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.59;ReadPosRankSum=1.38;SOR=0.132;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:59:59,0,256
chr1	1242707	rs2274262	A	G	10050.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DB;DP=129;ExcessHet=3.0103;FS=4.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=0.759;SOR=1.005;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,53:129:99:1377,0,2101
chr1	1242983	rs2887285	G	A	762.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=0.778;SOR=0.612;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:89:89,0,258
chr1	1243929	rs190454859	G	T	673.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=28.86;ReadPosRankSum=0.674;SOR=4.294;VQSLOD=0.506;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:38:0|1:1243929_G_T:39,0,38:1243929
chr1	1243933	.	GA	G	53.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.66;ReadPosRankSum=0.674;SOR=4.294;VQSLOD=0.906;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:38:0|1:1243929_G_T:39,0,38:1243929
chr1	1245368	rs11590283	G	A	7921.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.34;DB;DP=104;ExcessHet=3.9794;FS=10.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=0.800;SOR=1.446;VQSLOD=18.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,53:104:99:1721,0,1505
chr1	1246004	rs2296474	A	G	3575.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=0.836;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1219,105,0
chr1	1246438	rs115163464	G	A	2266.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.320e-01;DB;DP=213;ExcessHet=3.0103;FS=3.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=1.33;SOR=0.495;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,100:213:99:2275,0,2781
chr1	1247494	rs12103	T	C	2485.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900e-01;DB;DP=45;ExcessHet=3.9794;FS=18.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=0.751;SOR=2.001;VQSLOD=12.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:532,0,830
chr1	1247578	rs144812141	T	TGGGGG	732.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.20;ReadPosRankSum=0.246;SOR=0.412;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,5:18:99:163,0,636
chr1	1249187	rs12142199	G	A	20059.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-02;DB;DP=313;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=-4.030e-01;SOR=0.667;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:141,172:313:99:4530,0,3572
chr1	1250957	rs34054191	G	A	1613.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=135;ExcessHet=3.0103;FS=2.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=1.68;SOR=0.478;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,65:135:99:1622,0,1846
chr1	1254136	rs4970432	G	A	9936.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378e+00;DB;DP=90;ExcessHet=3.0103;FS=0.915;MQ=59.91;MQRankSum=-1.438e+00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=-2.660e-01;SOR=0.897;VQSLOD=1.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1428,0,1480
chr1	1254436	rs1886773	A	G	31681.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=270;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.41;SOR=0.931;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,270:270:99:10143,820,0
chr1	1254443	rs1886772	G	A	25016.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=279;ExcessHet=3.0103;FS=0.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.00;ReadPosRankSum=-3.620e-01;SOR=0.600;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,136:279:99:3547,0,3637
chr1	1254841	rs10907179	C	G	7545.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897e+00;DB;DP=93;ExcessHet=3.0103;FS=1.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.731;SOR=0.832;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,38:93:99:1012,0,1672
chr1	1256507	rs200518677	G	GC	2093.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=161;ExcessHet=3.0103;FS=7.738;MQ=60.00;MQRankSum=0.00;QD=13.00;ReadPosRankSum=-5.790e-01;SOR=1.276;VQSLOD=4.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:77,84:161:99:2102,0,1913
chr1	1257371	rs41285826	C	G	4467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e+00;DB;DP=292;ExcessHet=3.0103;FS=0.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=5.000e-03;SOR=0.648;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,154:292:99:4476,0,3940
chr1	1257593	rs1810745	A	G	4881.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.11;SOR=8.255;VQSLOD=24.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1541,120,0
chr1	1258818	rs141612519	G	A	289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.887e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-2.900e-02;SOR=0.412;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:298,0,485
chr1	1260168	rs61766199	C	A	1109.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=8;ExcessHet=3.0103;FS=1.719;MQ=59.79;MQRankSum=0.00;QD=29.21;ReadPosRankSum=2.08;SOR=1.308;VQSLOD=4.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,114
chr1	1262591	rs2296472	C	T	16731.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DB;DP=202;ExcessHet=3.0103;FS=0.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=0.604;SOR=0.841;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,114:202:99:3029,0,2092
chr1	1262966	rs307349	C	T	27771.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634e+00;DB;DP=381;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=-2.680e-01;SOR=0.700;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,215:381:99:5300,0,4278
chr1	1263144	rs307350	G	A	16722.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=203;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=0.743;SOR=0.588;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,111:203:99:3135,0,2439
chr1	1267325	rs200330269	G	GC	735.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=59.76;MQRankSum=-1.550e-01;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.600e-02;SOR=0.746;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,33:74:99:744,0,886
chr1	1267651	rs111615792	G	A	1741.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-2.260e-01;SOR=0.707;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,62:132:99:1750,0,1945
chr1	1268159	rs3813210	C	T	5082.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=351;ExcessHet=3.0103;FS=2.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-1.370e+00;SOR=0.554;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:173,178:351:99:5091,0,4695
chr1	1268847	rs307378	T	G	22873.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=0.704;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,246:246:99:7150,736,0
chr1	1269554	rs307377	T	C	24278.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=257;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.01;ReadPosRankSum=0.375;SOR=1.129;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,257:257:99:7791,769,0
chr1	1269986	rs35424002	G	A	715.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.512e+00;DB;DP=37;ExcessHet=3.0103;FS=2.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=-1.080e-01;SOR=1.880;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:724,0,487
chr1	1271942	rs111315662	C	T	641.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=39;ExcessHet=3.0103;FS=1.681;MQ=60.00;MQRankSum=0.00;QD=16.44;ReadPosRankSum=-1.105e+00;SOR=0.411;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:650,0,464
chr1	1273116	rs307371	A	G	10559.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230e-01;DB;DP=172;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=-5.700e-02;SOR=0.681;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,93:172:99:2216,0,1847
chr1	1273278	rs307370	A	G	1693.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=16;ExcessHet=3.9794;FS=1.612;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=0.057;SOR=1.284;VQSLOD=6.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:82:358,0,82
chr1	1275082	rs200363718	T	C	4851.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.800e-02;DB;DP=427;ExcessHet=3.0103;FS=0.524;MQ=59.97;MQRankSum=-1.041e+00;QD=11.36;ReadPosRankSum=-1.571e+00;SOR=0.634;VQSLOD=0.162;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:223,204:427:99:4860,0,5404
chr1	1275264	rs59153307	A	ACAGCCGCATGTCCCCCAGCAGCCCCCACAGACCCACCCG	7433.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQRankSum=0.210;QD=31.24;ReadPosRankSum=-1.294e+00;SOR=0.960;VQSLOD=0.263;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2644,178,0
chr1	1275730	rs147874931	G	A	3536.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=249;ExcessHet=3.0103;FS=2.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.737;SOR=0.857;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,134:249:99:3545,0,2922
chr1	1275956	rs111883533	C	T	306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660e-01;DB;DP=30;ExcessHet=3.0103;FS=1.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=2.65;SOR=1.244;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:315,0,504
chr1	1276077	rs3855955	G	A	394.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.66;SOR=3.258;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:196,15,0
chr1	1276812	rs307363	G	A	2807.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.91;QD=29.40;SOR=4.468;VQSLOD=4.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:658,51,0
chr1	1276973	rs145370195	G	GACAC	25135.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MQ=59.97;QD=36.76;SOR=1.557;VQSLOD=3.03;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,158:158:99:7333,499,0
chr1	1277533	rs307362	T	C	10908.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.443e+00;DB;DP=118;ExcessHet=3.0103;FS=4.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.62;ReadPosRankSum=-1.189e+00;SOR=1.334;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,117:118:99:3596,313,0
chr1	1278047	rs143423496	G	A	1547.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323e+00;DB;DP=142;ExcessHet=3.0103;FS=3.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-2.480e-01;SOR=0.486;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,65:142:99:1556,0,2151
chr1	1278237	rs307361	T	C	7529.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=2.405;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2388,230,0
chr1	1284490	rs150789461	G	A	5799.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=78;ExcessHet=3.0103;FS=6.296;MQ=60.00;MQRankSum=0.00;QD=28.57;ReadPosRankSum=0.891;SOR=1.417;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,37:78:99:1109,0,1115
chr1	1288345	rs13249	A	G	613.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=2.179;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:137,12,0
chr1	1288471	rs3766183	C	T	2188.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=2.04;SOR=1.156;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:453,0,507
chr1	1288583	rs3845295	C	G	7536.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650e-01;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=-1.168e+00;SOR=0.723;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,60:115:99:1559,0,1371
chr1	1288823	rs2296471	A	G	4316.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=50;ExcessHet=3.0103;FS=3.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.62;ReadPosRankSum=-8.700e-01;SOR=1.129;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:860,0,666
chr1	1289367	rs140777846	CTG	C	15280.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;DB;DP=149;ExcessHet=3.0103;FS=1.437;MQ=60.00;MQRankSum=0.00;QD=34.73;ReadPosRankSum=0.607;SOR=0.540;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:88,61:149:99:2286,0,3897
chr1	1289911	rs4970365	G	A	8589.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=92;ExcessHet=3.0103;FS=2.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.93;ReadPosRankSum=-5.300e-01;SOR=1.027;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,51:92:99:1629,0,1171
chr1	1291159	rs201260508	GA	G	644.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=21.53;SOR=0.914;VQSLOD=2.61;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,7:7:21:253,21,0
chr1	1293764	rs34841888	G	C	11760.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=208;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=1.58;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=1.18;SOR=0.651;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:110,98:208:99:2368,0,2632
chr1	1293948	rs191108239	C	T	1230.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769e+00;DB;DP=97;ExcessHet=3.0103;FS=0.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-4.000e-02;SOR=0.829;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,47:97:99:1239,0,1432
chr1	1294138	.	ACCGCACCCTTGGAGGGACAAGAAGGTCCGAGGACATGGGCCCCTGATACCACGTGAT	A	108.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e-01;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.04;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,1562
chr1	1296369	rs138096037	GAC	G	543.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.87;ReadPosRankSum=-9.670e-01;SOR=3.912;VQSLOD=3.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:35:78,0,35
chr1	1296691	rs2765025	C	G	10999.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=1.110;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4661,455,0
chr1	1296818	rs2765024	C	G	2980.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=4.615;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1137,90,0
chr1	1310074	rs2765035	C	G	11814.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=176;ExcessHet=3.0103;FS=2.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.98;ReadPosRankSum=-9.400e-01;SOR=0.553;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,93:176:99:2325,0,1823
chr1	1310181	rs112533928	A	G	1055.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e-01;DB;DP=94;ExcessHet=3.0103;FS=9.050;MQ=59.89;MQRankSum=-1.091e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-1.750e-01;SOR=0.228;VQSLOD=-4.228e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,42:94:99:1064,0,1417
chr1	1323030	rs146564472	G	A	1048.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=-1.300e-02;SOR=0.773;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,39:67:99:1057,0,698
chr1	1323078	rs12729599	A	G	3502.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DB;DP=36;ExcessHet=3.9794;FS=0.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=0.00;SOR=0.596;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,13:36:99:384,0,755
chr1	1323143	rs35654872	CCT	C	4291.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e-01;DB;DP=51;ExcessHet=3.9794;FS=3.238;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=0.587;SOR=0.462;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,22:51:99:827,0,1143
chr1	1323945	rs111530797	GTC	G,GTCTC	2046.05	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.609;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.10;ReadPosRankSum=0.759;SOR=1.085;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,5,6:12:99:355,131,334,178,0,223
chr1	1323963	rs113604022	C	A	131.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882e+00;DB;DP=13;ExcessHet=3.0103;FS=2.276;MQ=60.00;MQRankSum=0.00;QD=10.12;ReadPosRankSum=0.141;SOR=0.799;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:139,0,557
chr1	1323965	rs146981251	A	C	367.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.94;ReadPosRankSum=1.14;SOR=1.179;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:466,0,300
chr1	1323967	.	A	C	367.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.94;ReadPosRankSum=1.03;SOR=1.179;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:466,0,300
chr1	1325493	.	CA	C	314.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DP=12;ExcessHet=3.9794;FS=1.450;MQ=59.84;MQRankSum=0.00;QD=9.24;ReadPosRankSum=-2.300e-01;SOR=1.056;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:12:67:67,0,84
chr1	1330726	rs1240746	A	G	1087.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895e+00;DB;DP=32;ExcessHet=3.9794;FS=0.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=1.12;SOR=0.506;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,22:32:99:529,0,243
chr1	1333436	rs1240743	C	A	555.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=-1.350e-01;SOR=0.250;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:98:178,0,98
chr1	1334052	rs368050244	CTAGAG	C	537.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=0.276;SOR=0.473;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:546,0,816
chr1	1334519	rs114112990	G	C	3064.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DB;DP=222;ExcessHet=3.0103;FS=5.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.339;SOR=0.598;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,123:222:99:3073,0,2369
chr1	1335302	rs1240707	C	T	165.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-4.640e-01;SOR=0.892;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:174,0,138
chr1	1335790	rs1240708	A	G	2014.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.96;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=1.36;SOR=0.676;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,23:61:99:760,0,1136
chr1	1337837	rs1240709	A	G	67.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:75,0,34
chr1	1354515	rs904589	C	G	2355.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=269;ExcessHet=3.0103;FS=0.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=-1.712e+00;SOR=0.728;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:164,105:269:99:2364,0,4093
chr1	1354594	rs3766165	A	G	3524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=330;ExcessHet=3.0103;FS=7.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.846;SOR=1.039;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:193,137:330:99:3533,0,5098
chr1	1356550	rs12089560	A	G	376.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.653e+00;DB;DP=21;ExcessHet=3.0103;FS=5.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.507;SOR=0.089;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:385,0,281
chr1	1361555	rs1695848	T	C	717.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260e-01;DB;DP=47;ExcessHet=3.0103;FS=2.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=0.887;SOR=1.255;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,29:47:99:726,0,423
chr1	1361641	rs12030806	C	T	1975.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=47;ExcessHet=3.9794;FS=8.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=1.87;SOR=0.341;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,29:47:99:808,0,401
chr1	1363384	rs182184244	G	C	96.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=7;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=13.75;ReadPosRankSum=0.842;SOR=2.833;VQSLOD=17.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:76:104,0,76
chr1	1374834	rs1892289	A	G	1804.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818e+00;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-2.980e-01;SOR=0.736;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:607,0,819
chr1	1387348	rs1781143	C	T	7090.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687e+00;DB;DP=273;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=0.939;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.139;SOR=0.728;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:135,138:273:99:3448,0,3605
chr1	1387667	rs1781144	C	G	41095.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=406;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=0.831;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,406:406:99:12820,1221,0
chr1	1387726	rs9793066	A	G	5659.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=340;ExcessHet=3.9794;FS=1.176;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=-1.300e-01;SOR=0.799;VQSLOD=5.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:222,118:340:99:2646,0,5390
chr1	1387764	rs9793256	G	A	4619.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;DB;DP=251;ExcessHet=3.9794;FS=1.927;MQ=59.86;MQRankSum=-1.841e+00;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=0.786;SOR=0.521;VQSLOD=0.773;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:158,93:251:99:2143,0,4349
chr1	1387891	rs1624483	A	G	1473.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.897e+00;DB;DP=33;ExcessHet=3.9794;FS=19.021;MQ=59.45;MQRankSum=-1.595e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-5.430e-01;SOR=0.053;VQSLOD=-1.405e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,18:33:99:534,0,481
chr1	1387920	rs1625156	G	A	960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.854e+00;DB;DP=24;ExcessHet=3.9794;FS=5.891;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=0.144;SOR=0.175;VQSLOD=6.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:345,0,402
chr1	1389886	rs112630825	G	A	5369.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.80;DB;DP=396;ExcessHet=3.0103;FS=2.637;MQ=59.71;MQRankSum=-5.046e+00;QD=13.56;ReadPosRankSum=1.45;SOR=0.565;VQSLOD=-2.731e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:186,210:396:99:5378,0,3943
chr1	1390150	rs4970451	T	C	1207.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=51.75;MQRankSum=-7.430e-01;NEGATIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=1.87;SOR=0.321;VQSLOD=-2.720e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:603,0,301
chr1	1390717	rs1695866	A	G	1832.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.360e-01;DB;DP=65;ExcessHet=3.9794;FS=2.212;MQ=59.89;MQRankSum=0.00;QD=11.67;ReadPosRankSum=0.923;SOR=0.911;VQSLOD=4.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,33:65:99:844,0,817
chr1	1390875	rs1781147	C	T	2956.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=138;ExcessHet=3.9794;FS=2.578;MQ=58.50;MQRankSum=-3.120e-01;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.488;SOR=0.845;VQSLOD=-2.724e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:82,56:138:99:1325,0,2084
chr1	1390997	rs1781148	T	G	2990.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.45;DB;DP=108;ExcessHet=3.9794;FS=6.577;MQ=60.00;MQRankSum=0.00;QD=13.29;ReadPosRankSum=2.01;SOR=1.119;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,47:108:99:1465,0,1784
chr1	1391304	rs1695873	T	C	5329.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e-01;DB;DP=210;ExcessHet=3.9794;FS=0.000;MQ=58.46;MQRankSum=-4.336e+00;NEGATIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.558;SOR=0.678;VQSLOD=-1.980e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:94,116:210:99:2922,0,2421
chr1	1392413	rs35334427	A	C	1126.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=1.38;SOR=0.637;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,29:61:99:767,0,843
chr1	1392439	rs138918243	A	G	1379.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e+00;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=-3.158e+00;NEGATIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=1.68;SOR=0.777;VQSLOD=-1.303e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,36:77:99:0|1:1392439_A_G:1388,0,2120:1392439
chr1	1392440	rs187077523	T	C	1379.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=-3.158e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=1.79;SOR=0.777;VQSLOD=-1.675e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,36:77:99:0|1:1392439_A_G:1388,0,2120:1392439
chr1	1392451	rs1781149	C	T	1939.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=79;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=13.66;ReadPosRankSum=0.044;SOR=0.690;VQSLOD=4.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,43:79:99:1235,0,1014
chr1	1392722	rs113946614	A	C	677.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DB;DP=45;ExcessHet=3.0103;FS=11.103;MQ=59.76;MQRankSum=-8.910e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.398;SOR=0.077;VQSLOD=-4.898e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,24:45:99:686,0,608
chr1	1394627	rs190264554	G	A	1102.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=46.16;MQRankSum=0.302;QD=12.67;ReadPosRankSum=1.21;SOR=0.733;VQSLOD=-3.843e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1111,0,1048
chr1	1395449	.	AT	A	603.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DP=24;ExcessHet=6.9897;FS=10.150;MQ=59.94;MQRankSum=0.00;QD=8.16;ReadPosRankSum=0.555;SOR=1.987;VQSLOD=2.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:24:55:252,0,55
chr1	1395983	rs2801372	T	C	801.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560e+00;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.246;SOR=0.976;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:328,0,282
chr1	1404236	rs1240730	C	T	180.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=58.92;MQRankSum=0.502;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=1.08;SOR=1.402;VQSLOD=0.054;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:189,0,302
chr1	1407372	rs188574574	T	C	1136.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=50.46;MQRankSum=-5.799e+00;QD=10.42;ReadPosRankSum=0.201;SOR=0.715;VQSLOD=-4.355e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,32:57:99:798,0,554
chr1	1407538	rs78689788	C	G	474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.750e-01;DB;DP=25;ExcessHet=3.0103;FS=6.576;MQ=48.91;MQRankSum=-4.507e+00;QD=18.97;ReadPosRankSum=1.17;SOR=3.150;VQSLOD=-4.208e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,12:25:99:0|1:1407538_C_G:483,0,807:1407538
chr1	1407554	.	T	C	828.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289e+00;DP=46;ExcessHet=3.0103;FS=0.000;MQ=50.29;MQRankSum=-5.899e+00;QD=18.01;ReadPosRankSum=-1.009e+00;SOR=0.576;VQSLOD=-3.920e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,26:46:99:0|1:1407538_C_G:837,0,987:1407538
chr1	1407740	rs190009463	G	A	989.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088e+00;DB;DP=100;ExcessHet=3.0103;FS=4.064;MQ=49.99;MQRankSum=-2.114e+00;NEGATIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-8.000e-02;SOR=0.391;VQSLOD=-2.341e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,42:100:99:998,0,1607
chr1	1413884	rs368365041	A	G	166.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=58.84;MQRankSum=-4.543e+00;NEGATIVE_TRAIN_SITE;QD=4.05;ReadPosRankSum=-2.430e-01;SOR=0.693;VQSLOD=-2.609e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,7:41:99:0|1:1413884_A_G:175,0,1722:1413884
chr1	1413899	rs370601735	A	G	126.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=58.94;MQRankSum=-5.242e+00;QD=2.81;ReadPosRankSum=-8.020e-01;SOR=0.557;VQSLOD=-3.200e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,6:45:99:0|1:1413884_A_G:135,0,1785:1413884
chr1	1413925	rs371404580	C	T	39.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=48;ExcessHet=3.0103;FS=4.590;MQ=58.46;MQRankSum=-5.305e+00;QD=0.82;ReadPosRankSum=-1.958e+00;SOR=1.948;VQSLOD=-4.064e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,5:48:48:48,0,2028
chr1	1414714	rs1153102	A	G	57.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=51.64;MQRankSum=-2.515e+00;NEGATIVE_TRAIN_SITE;QD=6.36;ReadPosRankSum=0.480;SOR=0.283;VQSLOD=-3.365e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:66:66,0,223
chr1	1417339	rs705580	C	T	102.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.23;SOR=2.833;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr1	1417696	rs819970	C	G	2331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759e+00;DB;DP=68;ExcessHet=3.9794;FS=10.056;MQ=51.51;MQRankSum=-7.892e+00;QD=14.04;ReadPosRankSum=0.177;SOR=0.270;VQSLOD=-3.646e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,26:68:99:661,0,1327
chr1	1418531	rs819973	G	A	793.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=6.358;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:22:261,22,0
chr1	1421022	rs112314200	A	G	1019.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=60;ExcessHet=3.9794;FS=6.574;MQ=59.93;MQRankSum=0.00;QD=8.94;ReadPosRankSum=-5.660e-01;SOR=1.375;VQSLOD=4.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,24:60:99:613,0,861
chr1	1421531	rs819976	C	A	5463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191e+00;DB;DP=591;ExcessHet=3.0103;FS=1.105;MQ=59.93;MQRankSum=-1.121e+00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-2.002e+00;SOR=0.592;VQSLOD=1.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:330,261:591:99:5472,0,8059
chr1	1421991	rs860213	G	A	2528.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=200;ExcessHet=3.0103;FS=1.271;MQ=45.75;MQRankSum=0.914;QD=12.64;ReadPosRankSum=1.74;SOR=0.841;VQSLOD=-4.150e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,90:200:99:2537,0,2896
chr1	1423267	rs819977	A	G	1950.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154e+00;DB;DP=149;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-2.300e+00;SOR=0.691;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,82:149:99:1959,0,1683
chr1	1424695	rs144622790	G	A	1616.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590e+00;DB;DP=119;ExcessHet=3.0103;FS=2.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=2.58;SOR=0.962;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,65:119:99:1625,0,1438
chr1	1425407	rs2649578	A	G	445.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591e+00;DB;DP=25;ExcessHet=3.0103;FS=9.384;MQ=58.02;MQRankSum=-2.174e+00;NEGATIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-2.700e-02;SOR=1.250;VQSLOD=-1.550e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,12:25:99:0|1:1425407_A_G:454,0,828:1425407
chr1	1425412	rs2649579	A	G	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.170e-01;DB;DP=24;ExcessHet=3.0103;FS=10.020;MQ=57.94;MQRankSum=-2.277e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=0.580;SOR=1.670;VQSLOD=-9.900e-03;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,11:24:99:0|1:1425407_A_G:423,0,831:1425407
chr1	1425426	rs2242394	G	A	423.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780e-01;DB;DP=21;ExcessHet=3.0103;FS=15.233;MQ=57.64;MQRankSum=-2.005e+00;NEGATIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=1.06;SOR=2.430;VQSLOD=-2.423e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,11:21:99:0|1:1425426_G_A:432,0,681:1425426
chr1	1425427	.	A	G	423.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DP=21;ExcessHet=3.0103;FS=15.233;MQ=57.64;MQRankSum=-2.005e+00;NEGATIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=1.16;SOR=2.430;VQSLOD=-2.436e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,11:21:99:0|1:1425426_G_A:432,0,681:1425426
chr1	1425700	rs819980	T	C	3920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DB;DP=284;ExcessHet=3.0103;FS=1.991;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-7.470e-01;SOR=0.578;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:132,152:284:99:3929,0,3287
chr1	1447756	rs28627708	G	C	730.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=51;ExcessHet=3.0103;FS=4.344;MQ=48.85;MQRankSum=-6.206e+00;QD=14.32;ReadPosRankSum=-1.980e-01;SOR=1.414;VQSLOD=-3.158e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:739,0,566
chr1	1447816	.	G	A	185.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873e+00;DP=16;ExcessHet=3.0103;FS=0.000;MQ=42.17;MQRankSum=-3.923e+00;QD=11.58;ReadPosRankSum=-1.752e+00;SOR=1.426;VQSLOD=-4.206e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:194,0,296
chr1	1447877	.	C	G	63.89	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=53.34;QD=31.95;SOR=2.303;VQSLOD=1.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	1448100	rs143610735	A	G	1282.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.109e+00;DB;DP=101;ExcessHet=3.0103;FS=5.307;MQ=54.28;MQRankSum=-4.900e-01;NEGATIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.289;SOR=0.346;VQSLOD=-1.377e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,52:101:99:1291,0,1369
chr1	1451380	rs9439458	T	C	6191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DB;DP=465;ExcessHet=3.0103;FS=1.095;MQ=58.75;MQRankSum=-1.093e+00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.988;SOR=0.611;VQSLOD=0.988;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:213,252:465:99:6200,0,4967
chr1	1451489	rs9439459	T	C	2412.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.33;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=57.61;MQRankSum=-3.177e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=0.101;SOR=0.577;VQSLOD=-3.930e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,61:115:99:0|1:1451489_T_C:2421,0,3080:1451489
chr1	1451490	rs9439460	G	A	2412.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=57.63;MQRankSum=-3.129e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-8.000e-03;SOR=0.593;VQSLOD=-3.452e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,62:116:99:0|1:1451489_T_C:2421,0,3080:1451489
chr1	1453338	rs2801370	C	T	318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.69;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=52.47;MQRankSum=-3.456e+00;NEGATIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-1.605e+00;SOR=0.404;VQSLOD=-3.454e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,11:27:99:0|1:1453338_C_T:327,0,1139:1453338
chr1	1453356	rs2801369	T	C	236.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=58.59;MQRankSum=-1.273e+00;QD=15.75;ReadPosRankSum=0.737;SOR=0.260;VQSLOD=-9.558e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,5:15:99:0|1:1453338_C_T:245,0,978:1453338
chr1	1453373	rs7531221	A	G	472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.25;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=1.42;SOR=0.569;VQSLOD=0.880;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:1453338_C_T:229,0,720:1453338
chr1	1454046	.	T	TACAC	66.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.91;ReadPosRankSum=-2.650e-01;SOR=0.148;VQSLOD=5.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:19:74:74,0,613
chr1	1454069	.	A	ACACACC	438.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DP=31;ExcessHet=3.0103;FS=2.599;MQ=60.00;MQRankSum=0.00;QD=14.14;ReadPosRankSum=2.76;SOR=1.371;VQSLOD=4.74;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,8:31:99:447,0,823
chr1	1454207	rs114928482	C	T	7659.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=532;ExcessHet=3.9794;FS=1.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=1.81;SOR=0.599;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:350,182:532:99:3831,0,8870
chr1	1455314	rs2015388	T	G	316.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.75;ReadPosRankSum=1.15;SOR=1.802;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:33:0|1:1455314_T_G:123,0,33:1455314
chr1	1455318	rs2015387	T	C	316.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.75;ReadPosRankSum=1.15;SOR=1.802;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:33:0|1:1455314_T_G:123,0,33:1455314
chr1	1455477	rs3128349	C	T	497.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=50.04;MQRankSum=-4.760e+00;NEGATIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-3.750e-01;SOR=0.892;VQSLOD=-3.803e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,17:45:99:506,0,759
chr1	1458032	rs12068889	C	T	285.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.356e+00;DB;DP=27;ExcessHet=3.0103;FS=5.316;MQ=54.85;MQRankSum=0.994;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=1.68;SOR=0.105;VQSLOD=-1.605e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:294,0,519
chr1	1458073	rs3118507	A	G	2723.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=51;ExcessHet=3.9794;FS=4.962;MQ=57.87;MQRankSum=-1.377e+00;NEGATIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=0.435;SOR=1.253;VQSLOD=-1.360e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,26:51:99:661,0,601
chr1	1458150	rs1135025	T	C	1456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460e-01;DB;DP=106;ExcessHet=3.0103;FS=0.803;MQ=58.74;MQRankSum=1.63;QD=13.74;ReadPosRankSum=-6.360e-01;SOR=0.549;VQSLOD=-7.337e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,55:106:99:1465,0,1369
chr1	1459582	rs74508282	G	A	3832.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DB;DP=308;ExcessHet=3.0103;FS=1.419;MQ=55.32;MQRankSum=-7.670e-01;NEGATIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=1.89;SOR=0.595;VQSLOD=-3.121e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,160:308:99:3841,0,3526
chr1	1460793	rs57929223	CT	C	563.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.420e-01;DB;DP=67;ExcessHet=6.9897;FS=11.769;MQ=59.99;MQRankSum=0.00;QD=4.44;ReadPosRankSum=-1.075e+00;SOR=0.254;VQSLOD=0.813;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,17:67:99:247,0,614
chr1	1460906	rs10796394	C	T	378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=1.22;SOR=1.179;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:387,0,208
chr1	1462766	rs9439462	C	T	994.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;DB;DP=66;ExcessHet=3.0103;FS=2.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=2.25;SOR=0.412;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,38:66:99:1003,0,708
chr1	1463338	rs376072450	CT	C	65.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=17;ExcessHet=3.9794;FS=2.817;MQ=60.00;MQRankSum=0.00;QD=2.25;ReadPosRankSum=1.14;SOR=1.569;VQSLOD=4.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:17:31:31,0,189
chr1	1469221	rs6698376	T	C	323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DB;DP=25;ExcessHet=3.0103;FS=4.925;MQ=46.73;MQRankSum=-3.441e+00;QD=12.93;ReadPosRankSum=0.571;SOR=0.138;VQSLOD=-2.222e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:332,0,394
chr1	1469235	rs60473728	G	A	438.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183e+00;DB;DP=34;ExcessHet=3.0103;FS=7.444;MQ=46.86;MQRankSum=-4.038e+00;QD=12.89;ReadPosRankSum=-9.670e-01;SOR=0.082;VQSLOD=-2.592e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:447,0,475
chr1	1469263	rs6681228	G	T	778.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245e+00;DB;DP=57;ExcessHet=3.0103;FS=4.048;MQ=50.82;MQRankSum=-1.841e+00;NEGATIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-1.504e+00;SOR=0.267;VQSLOD=-2.170e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,33:57:99:787,0,640
chr1	1469546	rs3128344	G	A	8202.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=54.09;QD=33.48;SOR=0.859;VQSLOD=0.818;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2725,246,0
chr1	1469598	rs9439464	C	G	2904.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.99;DB;DP=100;ExcessHet=1.5490;FS=3.858;MQ=49.36;MQRankSum=-6.212e+00;QD=19.24;ReadPosRankSum=-2.736e+00;SOR=0.428;VQSLOD=-3.401e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:80,20:100:99:0|1:1469598_C_G:588,0,3262:1469598
chr1	1469599	rs3128343	G	C	2942.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.84;DB;DP=100;ExcessHet=1.5490;FS=3.853;MQ=49.29;MQRankSum=-6.212e+00;QD=19.62;ReadPosRankSum=-2.702e+00;SOR=0.449;VQSLOD=-3.400e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:80,20:100:99:0|1:1469598_C_G:588,0,3262:1469598
chr1	1474871	rs9439465	G	C	207.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:68,0,63
chr1	1475508	.	GGGGGAGCGCAGGCCGGGGA	G	588.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.35;ReadPosRankSum=-4.400e-02;SOR=0.356;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,16:41:99:597,0,3405
chr1	1475801	rs190482382	C	T	1181.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.724e+00;DB;DP=91;ExcessHet=3.0103;FS=5.416;MQ=60.00;MQRankSum=0.00;QD=12.98;ReadPosRankSum=0.588;SOR=1.450;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1190,0,1498
chr1	1477244	rs7290	T	C	1879.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e+00;DB;DP=63;ExcessHet=3.9794;FS=4.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=1.04;SOR=0.349;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,34:63:99:902,0,780
chr1	1479186	rs145399149	C	A	532.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=33;ExcessHet=3.0103;FS=2.165;MQ=60.00;MQRankSum=0.00;QD=16.13;ReadPosRankSum=1.81;SOR=0.250;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:541,0,460
chr1	1479333	rs7533	A	G	2916.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DB;DP=99;ExcessHet=3.9794;FS=0.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.021;SOR=0.797;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,46:99:99:1168,0,1301
chr1	1480226	rs116703397	C	T	2616.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DB;DP=210;ExcessHet=3.0103;FS=6.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.543;SOR=0.935;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,109:210:99:2625,0,2343
chr1	1509825	rs6666293	A	G	3323.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=145;ExcessHet=3.9794;FS=0.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=1.17;SOR=0.625;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,72:145:99:1773,0,1728
chr1	1510035	rs150737039	GGC	G	2044.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.93;ReadPosRankSum=0.719;SOR=0.869;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,20:43:99:771,0,947
chr1	1510724	rs77661767	C	T	1232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=67;ExcessHet=3.0103;FS=2.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=-2.900e-01;SOR=0.334;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,41:67:99:1241,0,724
chr1	1510801	rs7519837	C	T	1047.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=0.945;SOR=0.660;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:456,0,288
chr1	1550702	rs4648611	A	G	459.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.17;ReadPosRankSum=-6.740e-01;SOR=3.611;VQSLOD=17.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr1	1551249	rs9726211	C	T	687.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.000e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=0.700;SOR=1.143;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:458,33,0
chr1	1551927	rs7418389	T	C	4227.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=62;ExcessHet=3.9794;FS=6.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=-8.550e-01;SOR=1.179;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2143,186,0
chr1	1558792	rs12755088	T	C	2639.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.926;DB;DP=34;ExcessHet=3.0103;FS=1.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=0.657;SOR=0.502;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1220,102,0
chr1	1559466	rs28617190	G	A	2219.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;DB;DP=38;ExcessHet=1.5490;FS=2.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=-1.088e+00;SOR=0.214;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1409,113,0
chr1	1559971	rs12748433	C	T	2770.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=7.024;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1089,81,0
chr1	1560100	rs28441650	G	A	5902.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=144;ExcessHet=1.5490;FS=2.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=0.640;SOR=0.873;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,142:144:99:4242,383,0
chr1	1561185	rs72634817	G	A	860.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=18;ExcessHet=1.5490;FS=2.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=1.02;SOR=0.223;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:657,54,0
chr1	1563789	rs74892851	C	A	10698.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.391;DB;DP=226;ExcessHet=1.5490;FS=0.000;MQ=59.96;MQRankSum=-9.680e-01;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=0.436;SOR=0.673;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,226:226:99:7268,678,0
chr1	1564194	rs3935032	C	T	194.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.57;SOR=1.981;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr1	1564952	rs112177324	TG	T	5296.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.840e-01;DB;DP=128;ExcessHet=1.5490;FS=4.071;MQ=60.00;MQRankSum=0.00;QD=21.36;ReadPosRankSum=-2.090e-01;SOR=0.993;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4033,385,0
chr1	1565226	.	CCCCCCAG	C	240.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.37;ReadPosRankSum=1.47;SOR=2.584;VQSLOD=4.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:66:249,0,66
chr1	1566068	rs28730454	A	G	8304.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=59.85;QD=32.57;SOR=5.518;VQSLOD=4.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:80:99:3542,281,0
chr1	1566160	rs28464684	T	C	3957.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=9.044;VQSLOD=25.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1006,69,0
chr1	1576636	rs3765908	G	A	901.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.980e-01;DB;DP=8;ExcessHet=3.0103;FS=5.375;MQ=53.93;MQRankSum=3.72;NEGATIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-1.217e+00;SOR=0.105;VQSLOD=-2.546e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:296,24,0
chr1	1580738	rs149767621	T	A	11894.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.980e+00;DB;DP=437;ExcessHet=6.9897;FS=0.604;MQ=40.04;MQRankSum=-4.336e+00;QD=9.62;ReadPosRankSum=0.215;SOR=0.598;VQSLOD=-5.042e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:300,137:437:99:2715,0,7877
chr1	1581713	rs76922129	A	C,G	3842.92	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.77;DB;DP=75;ExcessHet=3.9794;FS=4.923;MQ=54.73;MQRankSum=-2.902e+00;NEGATIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-2.830e-01;SOR=1.054;VQSLOD=-1.848e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:1,65,9:75:99:2059,290,102,1766,0,1747
chr1	1581881	rs61774916	T	C	1120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=137;ExcessHet=3.9794;FS=0.000;MQ=56.22;MQRankSum=-5.116e+00;QD=3.49;ReadPosRankSum=0.815;SOR=0.724;VQSLOD=-4.710e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:105,32:137:99:528,0,2972
chr1	1581958	rs200481124	T	C	355.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.61;DB;DP=99;ExcessHet=3.9794;FS=2.633;MQ=50.91;MQRankSum=-2.720e+00;NEGATIVE_TRAIN_SITE;QD=1.82;ReadPosRankSum=-6.620e-01;SOR=0.958;VQSLOD=-3.621e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,18:99:99:242,0,2408
chr1	1582106	rs79942991	T	C	12840.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=42.91;QD=31.63;SOR=1.140;VQSLOD=-4.328e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4029,399,0
chr1	1582202	rs61774918	C	T	4704.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.801e+00;DB;DP=186;ExcessHet=6.9897;FS=0.536;MQ=51.43;MQRankSum=-8.510e-01;NEGATIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-8.130e-01;SOR=0.655;VQSLOD=-3.385e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:127,59:186:99:1162,0,3588
chr1	1582794	rs4648754	C	A	4617.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=49.07;QD=29.53;SOR=3.506;VQSLOD=-5.920e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1131,95,0
chr1	1582841	rs61774920	A	G	3131.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.129e+00;DB;DP=59;ExcessHet=6.9897;FS=6.923;MQ=38.97;MQRankSum=-3.920e-01;QD=15.06;ReadPosRankSum=-7.370e-01;SOR=0.328;VQSLOD=-4.567e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,23:59:99:0|1:1582841_A_G:811,0,1432:1582841
chr1	1583243	rs184794094	G	A	438.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=58.62;MQRankSum=-3.640e-01;QD=19.05;ReadPosRankSum=-5.600e-01;SOR=0.511;VQSLOD=-5.252e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,13:23:99:447,0,355
chr1	1583669	rs70937163	C	CT	3662.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=46.06;QD=32.63;SOR=3.841;VQSLOD=5.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1253,93,0
chr1	1585347	rs4648760	T	C	416.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=-1.150e+00;SOR=3.442;VQSLOD=17.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:1585347_T_C:90,6,0:1585347
chr1	1585388	rs4648761	A	G	445.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.80;ReadPosRankSum=0.598;SOR=2.303;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:1585347_T_C:125,9,0:1585347
chr1	1585597	rs7531938	A	G	5100.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.176e+00;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=0.122;SOR=0.710;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1980,192,0
chr1	1585642	rs3936009	G	T	5898.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.041e+00;DB;DP=77;ExcessHet=3.0103;FS=0.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=1.04;SOR=0.758;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2295,231,0
chr1	1586752	rs11486023	T	C	4862.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.08;SOR=1.742;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1705,162,0
chr1	1588670	rs61774958	G	A	1605.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199e+00;DB;DP=44;ExcessHet=6.9897;FS=5.287;MQ=59.75;MQRankSum=-2.072e+00;NEGATIVE_TRAIN_SITE;QD=8.28;ReadPosRankSum=-1.160e-01;SOR=1.129;VQSLOD=-1.475e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,11:44:99:276,0,1009
chr1	1588717	rs61774959	G	A	1795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=87;ExcessHet=6.9897;FS=3.019;MQ=57.06;MQRankSum=-1.221e+00;NEGATIVE_TRAIN_SITE;QD=5.99;ReadPosRankSum=1.48;SOR=0.916;VQSLOD=-2.953e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,14:87:99:207,0,1966
chr1	1588737	rs61776760	C	T	2298.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=94;ExcessHet=6.9897;FS=2.285;MQ=55.92;MQRankSum=-1.096e+00;NEGATIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=1.91;SOR=0.551;VQSLOD=-3.310e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:81,13:94:99:0|1:1588737_C_T:290,0,3624:1588737
chr1	1588743	rs61776761	A	T	2239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490e-01;DB;DP=101;ExcessHet=6.9897;FS=2.285;MQ=55.18;MQRankSum=-1.251e+00;NEGATIVE_TRAIN_SITE;QD=6.79;ReadPosRankSum=1.33;SOR=0.543;VQSLOD=-3.223e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:88,13:101:99:0|1:1588737_C_T:281,0,3755:1588737
chr1	1588744	rs79724854	AGCG	A	2187.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644e+00;DB;DP=104;ExcessHet=6.9897;FS=1.611;MQ=55.08;MQRankSum=-1.101e+00;QD=6.51;ReadPosRankSum=1.38;SOR=0.589;VQSLOD=0.166;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:91,13:104:99:0|1:1588737_C_T:272,0,3840:1588737
chr1	1595867	rs4443835	C	A	9816.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MQ=44.72;QD=30.97;SOR=1.154;VQSLOD=-3.716e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3943,387,0
chr1	1596974	rs4074020	C	T	377.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=2.494;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:105,9,0
chr1	1599547	rs12725286	C	T	344.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=47.66;MQRankSum=0.253;QD=26.52;ReadPosRankSum=-1.282e+00;SOR=0.941;VQSLOD=-3.695e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr1	1601862	rs34950577	AT	A	84.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=21.11;SOR=1.609;VQSLOD=2.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:98,12,0
chr1	1602587	rs4233029	C	T	69	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=2.303;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	1602787	rs4639697	G	T	3445.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=2.170;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1022,95,0
chr1	1603236	rs11523819	G	A	238.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.03;SOR=4.174;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:252,21,0
chr1	1636355	rs2377226	A	G	1846.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.16;DB;DP=57;ExcessHet=1.5490;FS=10.747;MQ=50.64;MQRankSum=-7.652e+00;QD=10.86;ReadPosRankSum=-4.100e-02;SOR=0.447;VQSLOD=-4.007e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1832,171,0
chr1	1644836	rs2179382	G	A	693.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=46;ExcessHet=3.9794;FS=2.677;MQ=50.71;MQRankSum=0.588;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.29;ReadPosRankSum=0.373;SOR=0.451;VQSLOD=-1.447e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,10:46:99:171,0,995
chr1	1644908	rs2179383	C	T	3414.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.14;DB;DP=21;ExcessHet=3.0103;FS=17.600;MQ=46.80;MQRankSum=-6.227e+00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=-1.930e-01;SOR=1.297;VQSLOD=-3.768e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:804,63,0
chr1	1645050	rs77869096	C	T	1524.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.800e-02;DB;DP=13;ExcessHet=3.0103;FS=5.386;MQ=53.29;MQRankSum=-9.488e+00;QD=11.55;ReadPosRankSum=-2.891e+00;SOR=1.157;VQSLOD=-4.812e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:448,39,0
chr1	1645190	rs113713941	T	C	299.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=1.5490;FS=5.756;MQ=40.73;MQRankSum=-6.370e-01;QD=21.42;ReadPosRankSum=0.712;SOR=2.038;VQSLOD=-5.184e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:247,21,0
chr1	1646427	rs138665669	T	G	2598.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=18;ExcessHet=3.0103;FS=3.453;MQ=54.28;MQRankSum=-1.773e+00;NEGATIVE_TRAIN_SITE;QD=28.56;ReadPosRankSum=1.30;SOR=0.247;VQSLOD=-1.951e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:641,54,0
chr1	1646450	rs141565668	G	A	1517.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.910e+00;DB;DP=8;ExcessHet=3.0103;FS=17.624;MQ=51.93;MQRankSum=-2.148e+00;NEGATIVE_TRAIN_SITE;QD=27.60;ReadPosRankSum=-3.340e-01;SOR=3.246;VQSLOD=-4.639e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:291,24,0
chr1	1646657	rs760926	T	C	319.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.021e+00;DB;DP=2;ExcessHet=3.0103;FS=1.547;MQ=54.42;MQRankSum=-4.566e+00;NEGATIVE_TRAIN_SITE;QD=7.43;ReadPosRankSum=-2.464e+00;SOR=0.780;VQSLOD=-4.330e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr1	1646980	rs61776853	A	C	374.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=58.19;QD=35.18;SOR=4.615;VQSLOD=3.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:1646980_A_C:90,6,0:1646980
chr1	1646985	rs61776854	C	T	275.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=58.19;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=30.65;ReadPosRankSum=1.65;SOR=2.093;VQSLOD=-1.444e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:1646980_A_C:90,6,0:1646980
chr1	1646992	rs35642458	G	A	342.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=55.76;QD=29.59;SOR=4.407;VQSLOD=3.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:1646980_A_C:90,6,0:1646980
chr1	1647649	rs70937179	C	CT	757.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.000e-01;DB;DP=3;ExcessHet=3.0103;FS=3.665;MQ=56.10;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=-4.050e-01;SOR=2.400;VQSLOD=0.429;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	1647686	rs909823	A	C	1263.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.839e+00;DB;DP=4;ExcessHet=3.0103;FS=4.217;MQ=58.76;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=-9.550e-01;SOR=2.726;VQSLOD=0.409;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr1	1647722	rs114460890	G	T	1629.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.457e+00;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.70;ReadPosRankSum=-2.007e+00;SOR=0.693;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,9:23:99:0|1:1647722_G_T:462,0,552:1647722
chr1	1647725	rs368680882	G	A	1728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.107e+00;DB;DP=26;ExcessHet=6.9897;FS=1.459;MQ=60.00;MQRankSum=0.00;QD=12.90;ReadPosRankSum=-2.077e+00;SOR=0.956;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,12:26:99:0|1:1647722_G_T:459,0,594:1647722
chr1	1647726	rs80025558	T	G	1761.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.48;DB;DP=26;ExcessHet=6.9897;FS=1.468;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=-2.040e+00;SOR=0.983;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,12:26:99:0|1:1647722_G_T:456,0,636:1647722
chr1	1647729	.	C	T	1826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DP=28;ExcessHet=6.9897;FS=10.602;MQ=60.00;MQRankSum=0.00;QD=12.43;ReadPosRankSum=-1.524e+00;SOR=2.165;VQSLOD=14.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,12:28:99:0|1:1647722_G_T:456,0,636:1647722
chr1	1647730	.	A	G	1830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.00;DP=28;ExcessHet=6.9897;FS=10.429;MQ=60.00;MQRankSum=0.00;QD=12.13;ReadPosRankSum=-1.308e+00;SOR=2.225;VQSLOD=14.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,12:28:99:0|1:1647722_G_T:456,0,636:1647722
chr1	1647745	rs72634830	G	A	3157.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=44;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.62;ReadPosRankSum=-1.452e+00;SOR=0.726;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,21:44:99:0|1:1647745_G_A:860,0,936:1647745
chr1	1647753	rs74045984	C	T	3496.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271e+00;DB;DP=52;ExcessHet=6.9897;FS=1.311;MQ=60.00;MQRankSum=0.00;QD=14.16;ReadPosRankSum=-7.970e-01;SOR=0.547;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,27:52:99:0|1:1647745_G_A:947,0,1007:1647745
chr1	1647777	.	C	T	743.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.06;ReadPosRankSum=-9.750e-01;SOR=0.633;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,29:82:99:752,0,1961
chr1	1647778	rs72901773	C	G	5341.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353e+00;DB;DP=83;ExcessHet=6.9897;FS=4.450;MQ=60.00;MQRankSum=0.00;QD=13.84;ReadPosRankSum=-1.245e+00;SOR=0.930;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,48:83:99:1691,0,1137
chr1	1647814	rs72901775	T	C	8217.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=151;ExcessHet=6.9897;FS=2.571;MQ=59.97;MQRankSum=0.00;QD=13.91;ReadPosRankSum=-9.300e-02;SOR=0.863;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,90:151:99:2440,0,1042
chr1	1647871	rs72909014	T	C	9933.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e-01;DB;DP=204;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.59;ReadPosRankSum=-1.900e-02;SOR=0.707;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,133:204:99:3285,0,1511
chr1	1647893	rs144636354	C	CTTTCTT	14916.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112e+00;DB;DP=186;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.92;ReadPosRankSum=-1.280e+00;SOR=0.718;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:66,120:186:99:4819,0,2349
chr1	1647928	rs1883424	A	G	2505.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840e-01;DB;DP=151;ExcessHet=3.9794;FS=8.888;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=0.700;SOR=0.400;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,56:151:99:1092,0,2564
chr1	1647971	rs77394327	G	A	6970.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=84;ExcessHet=6.9897;FS=22.123;MQ=59.51;MQRankSum=-1.931e+00;NEGATIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=-1.476e+00;SOR=1.680;VQSLOD=-3.123e+00;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,56:84:99:0|1:1647968_C_CAT:2435,0,995:1647968
chr1	1647983	rs74429813	T	A	4705.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.16;DB;DP=63;ExcessHet=6.9897;FS=23.061;MQ=59.28;MQRankSum=-2.182e+00;NEGATIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-1.210e-01;SOR=1.968;VQSLOD=-3.325e+00;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,43:63:99:0|1:1647968_C_CAT:1868,0,743:1647968
chr1	1648002	rs77107184	C	T	3222.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020e+00;DB;DP=45;ExcessHet=6.9897;FS=14.424;MQ=58.97;MQRankSum=-2.262e+00;NEGATIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=-8.200e-01;SOR=2.351;VQSLOD=-2.295e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,29:45:99:0|1:1647968_C_CAT:1204,0,624:1647968
chr1	1648018	rs79409185	C	T	2157.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.29;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=58.48;MQRankSum=-2.912e+00;QD=15.64;ReadPosRankSum=0.327;SOR=1.045;VQSLOD=-1.202e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,18:31:99:0|1:1647968_C_CAT:709,0,524:1647968
chr1	1648027	rs61776857	T	C	3694.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.795e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=58.08;MQRankSum=-1.602e+00;NEGATIVE_TRAIN_SITE;QD=33.90;ReadPosRankSum=-8.300e-01;SOR=1.448;VQSLOD=-1.447e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1110,75,0
chr1	1648053	.	A	G	1030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DP=16;ExcessHet=6.9897;FS=4.162;MQ=56.56;MQRankSum=-3.451e+00;NEGATIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-2.030e-01;SOR=0.089;VQSLOD=-2.080e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,13:16:87:0|1:1648053_A_G:537,0,87:1648053
chr1	1648054	.	A	G	1030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DP=16;ExcessHet=6.9897;FS=4.162;MQ=56.56;MQRankSum=-3.451e+00;NEGATIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-2.030e-01;SOR=0.089;VQSLOD=-2.080e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,13:16:87:0|1:1648053_A_G:537,0,87:1648053
chr1	1648058	rs77653063	G	T	1036.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254e+00;DB;DP=16;ExcessHet=6.9897;FS=3.917;MQ=56.36;MQRankSum=-3.365e+00;NEGATIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-5.850e-01;SOR=0.105;VQSLOD=-2.110e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,13:16:87:0|1:1648053_A_G:537,0,87:1648053
chr1	1650787	rs1137003	T	C	4567.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090e-01;DB;DP=45;ExcessHet=6.9897;FS=1.152;MQ=60.00;MQRankSum=0.00;QD=23.19;ReadPosRankSum=-2.390e-01;SOR=0.599;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,32:45:99:0|1:1650787_T_C:1339,0,447:1650787
chr1	1650797	rs1059830	A	G	4882.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-01;DB;DP=50;ExcessHet=6.9897;FS=0.000;MQ=59.93;MQRankSum=0.00;QD=23.36;ReadPosRankSum=0.141;SOR=0.697;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,36:50:99:0|1:1650787_T_C:1504,0,476:1650787
chr1	1650801	rs1137004	T	C	4977.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DB;DP=51;ExcessHet=6.9897;FS=0.511;MQ=59.94;MQRankSum=0.00;QD=22.52;ReadPosRankSum=-1.270e-01;SOR=0.748;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,37:51:99:0|1:1650787_T_C:1491,0,476:1650787
chr1	1650807	rs1137005	T	C	1629.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DB;DP=51;ExcessHet=6.9897;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=7.03;ReadPosRankSum=0.232;SOR=0.699;VQSLOD=4.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,14:51:99:298,0,1500
chr1	1650832	rs72909030	A	G	4535.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=17.12;ReadPosRankSum=-9.000e-01;SOR=0.663;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,44:58:99:1377,0,340
chr1	1650845	rs1059831	G	A	1887.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=59;ExcessHet=6.9897;FS=2.921;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=0.481;SOR=0.879;VQSLOD=6.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,14:59:99:297,0,1257
chr1	1650920	rs36191908	G	A	3498.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-02;DB;DP=60;ExcessHet=6.9897;FS=0.939;MQ=60.00;MQRankSum=0.00;QD=12.54;ReadPosRankSum=0.726;SOR=0.769;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,42:60:99:0|1:1650920_G_A:1709,0,609:1650920
chr1	1650938	.	CGG	C	5067.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DP=59;ExcessHet=6.9897;FS=0.456;MQ=60.00;MQRankSum=0.00;QD=19.57;ReadPosRankSum=-9.710e-01;SOR=0.747;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,42:59:99:0|1:1650920_G_A:1712,0,587:1650920
chr1	1650942	.	A	AAG	4933.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770e-01;DP=58;ExcessHet=6.9897;FS=0.459;MQ=60.00;MQRankSum=0.00;QD=19.43;SOR=0.730;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,41:58:99:0|1:1650920_G_A:1712,0,587:1650920
chr1	1650960	rs72634834	G	A	3802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=50;ExcessHet=6.9897;FS=1.713;MQ=60.00;MQRankSum=0.00;QD=18.02;ReadPosRankSum=-1.419e+00;SOR=0.826;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,33:50:99:0|1:1650920_G_A:1376,0,601:1650920
chr1	1650967	rs75384210	T	C	3440.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=45;ExcessHet=6.9897;FS=0.549;MQ=60.00;MQRankSum=0.00;QD=17.74;ReadPosRankSum=-1.873e+00;SOR=0.780;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,29:45:99:0|1:1650920_G_A:1254,0,568:1650920
chr1	1650996	rs74223875	T	C	1740.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=28;ExcessHet=6.9897;FS=3.593;MQ=60.00;MQRankSum=0.00;QD=12.62;ReadPosRankSum=-1.310e+00;SOR=1.064;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,14:28:99:0|1:1650996_T_C:498,0,486:1650996
chr1	1651003	rs76941027	G	A	1501.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.000e-03;DB;DP=23;ExcessHet=6.9897;FS=4.133;MQ=60.00;MQRankSum=0.00;QD=12.21;ReadPosRankSum=-7.140e-01;SOR=1.125;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,10:23:99:0|1:1650996_T_C:442,0,463:1650996
chr1	1651076	rs34673677	ACGGAGT	A	165.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=32.25;SOR=3.258;VQSLOD=2.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	1653004	rs36039898	T	C	5251.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.18;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=58.01;MQRankSum=-4.988e+00;NEGATIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=-4.730e-01;SOR=0.732;VQSLOD=-2.006e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1348,132,0
chr1	1653028	rs16825265	C	T	5933.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=50;ExcessHet=3.0103;FS=3.520;MQ=58.26;MQRankSum=-4.592e+00;NEGATIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=-6.290e-01;SOR=0.957;VQSLOD=-2.361e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1538,150,0
chr1	1653303	rs35548050	T	C	577.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=58.12;MQRankSum=-8.870e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=0.703;SOR=1.609;VQSLOD=-1.380e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr1	1653885	rs61777493	C	A	267.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=50.45;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.05;SOR=4.174;VQSLOD=1.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	1654013	rs74045997	C	G	236.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=3;ExcessHet=0.4576;FS=5.929;MQ=57.64;MQRankSum=-7.159e+00;QD=33.80;ReadPosRankSum=-2.291e+00;SOR=1.931;VQSLOD=-1.856e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
chr1	1654038	rs61777494	G	A	1085.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=5;ExcessHet=3.0103;FS=16.097;MQ=56.02;MQRankSum=-6.688e+00;QD=12.62;ReadPosRankSum=-3.139e+00;SOR=2.476;VQSLOD=-5.162e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr1	1661704	rs710322	A	G	2686.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.41;DB;DP=41;ExcessHet=1.5490;FS=3.648;MQ=51.40;MQRankSum=-8.231e+00;QD=20.51;ReadPosRankSum=-1.444e+00;SOR=1.113;VQSLOD=-4.125e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1456,123,0
chr1	1663605	rs66653340	A	G	474.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=-3.190e-01;SOR=4.047;VQSLOD=18.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr1	1663851	rs2294486	G	C	4428.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.222e+00;DB;DP=44;ExcessHet=1.5490;FS=4.025;MQ=60.00;MQRankSum=0.00;QD=28.03;ReadPosRankSum=-5.060e-01;SOR=1.028;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:1663851_G_C:1980,132,0:1663851
chr1	1663861	rs2294487	G	A	4517.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.010e-01;DB;DP=49;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.15;ReadPosRankSum=-1.058e+00;SOR=0.746;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,49:49:99:1|1:1663851_G_C:2134,147,0:1663851
chr1	1664019	rs2294488	T	C	4730.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.282;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=0.486;SOR=0.659;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1088,108,0
chr1	1664124	rs2294489	T	C	2566.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.67;ReadPosRankSum=1.48;SOR=0.693;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
chr1	1666338	rs2072924	G	A	3809.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=53;ExcessHet=3.0103;FS=2.172;MQ=52.93;MQRankSum=-6.120e+00;QD=22.41;ReadPosRankSum=0.173;SOR=0.923;VQSLOD=-3.763e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1618,159,0
chr1	1666447	rs34869725	G	GGTTT	1422.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=54.14;MQRankSum=1.52;QD=32.32;ReadPosRankSum=1.74;SOR=0.922;VQSLOD=0.189;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:394,27,0
chr1	1669646	rs201497363	ACT	A	1477.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.520e-01;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=49.84;MQRankSum=-2.288e+00;QD=34.37;ReadPosRankSum=0.452;SOR=0.600;VQSLOD=0.026;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:720,48,0
chr1	1669748	rs115554296	A	G	2596.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.087e+00;DB;DP=44;ExcessHet=1.5490;FS=5.353;MQ=53.61;MQRankSum=-7.467e+00;QD=20.78;ReadPosRankSum=-4.280e-01;SOR=0.322;VQSLOD=-2.849e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1362,132,0
chr1	1669964	rs369037660	G	A	451.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=39.42;MQRankSum=-6.150e-01;QD=23.78;ReadPosRankSum=0.977;SOR=1.609;VQSLOD=-4.569e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:234,18,0
chr1	1684169	rs7796	C	G	710.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=0.141;SOR=2.400;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:425,30,0
chr1	1684347	rs150880809	C	CCCT	7522.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.849;DB;DP=152;ExcessHet=1.5490;FS=0.927;MQ=60.00;MQRankSum=0.00;QD=22.87;ReadPosRankSum=1.09;SOR=0.777;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,150:152:99:4406,412,0
chr1	1684472	rs7407	C	T	5964.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=147;ExcessHet=1.5490;FS=2.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=0.972;SOR=0.531;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4522,439,0
chr1	1684800	rs2072927	G	A	372.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.83;ReadPosRankSum=0.652;SOR=1.329;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:288,24,0
chr1	1685213	rs2072928	C	G	2277.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.569e+00;DB;DP=21;ExcessHet=3.0103;FS=3.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.08;ReadPosRankSum=-5.710e-01;SOR=1.308;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:782,63,0
chr1	1687482	rs2076328	G	T	37.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.81;SOR=0.693;VQSLOD=15.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	1688192	rs2281173	A	G	8476.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.090e+00;DB;DP=117;ExcessHet=3.0103;FS=1.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=0.086;SOR=0.823;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3658,351,0
chr1	1688469	rs4648623	C	G	1888.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.69;DB;DP=18;ExcessHet=3.0103;FS=5.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=1.31;SOR=2.093;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:736,54,0
chr1	1689762	rs2235537	T	C	1331.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=29;ExcessHet=6.9897;FS=3.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.132;SOR=0.409;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:524,0,316
chr1	1690126	rs79655042	A	AAC	3191.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.214e+00;DB;DP=23;ExcessHet=3.0103;FS=1.661;MQ=60.00;MQRankSum=0.00;QD=29.84;ReadPosRankSum=1.41;SOR=0.404;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1005,69,0
chr1	1690793	rs2235538	G	A	2039.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=38;ExcessHet=1.5490;FS=2.440;MQ=60.00;MQRankSum=0.00;QD=27.94;ReadPosRankSum=-8.260e-01;SOR=0.396;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1488,113,0
chr1	1691050	rs35672141	C	T	548.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.30;ReadPosRankSum=-7.280e-01;SOR=1.863;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:253,18,0
chr1	1693726	rs17162854	A	G	591.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.88;ReadPosRankSum=0.366;SOR=1.329;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:418,33,0
chr1	1696659	rs5021859	A	G	962.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.035e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=0.976;SOR=0.910;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:435,45,0
chr1	1718642	rs79370402	C	A	1035.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-7.210e-01;SOR=0.627;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,38:85:99:1044,0,1245
chr1	1724366	rs34645159	G	A	107.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.80;SOR=1.179;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	1724503	rs33952351	C	CA	366.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050e-01;DB;DP=18;ExcessHet=6.9897;FS=5.084;MQ=60.00;MQRankSum=0.00;QD=7.34;ReadPosRankSum=0.928;SOR=0.123;VQSLOD=4.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,7:18:99:129,0,233
chr1	1737895	rs77354509	G	A	1054.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DB;DP=71;ExcessHet=3.0103;FS=12.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-6.490e-01;SOR=1.607;VQSLOD=15.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,29:71:99:0|1:1737895_G_A:1063,0,2421:1737895
chr1	1737900	rs17363334	C	T	1020.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=70;ExcessHet=3.0103;FS=10.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-5.460e-01;SOR=1.270;VQSLOD=19.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,28:70:99:0|1:1737895_G_A:1029,0,2424:1737895
chr1	1823093	rs138986851	C	CAGAG	279.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.09;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr1	1823922	rs6688000	A	G	11442.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.609e+00;DB;DP=160;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=-1.010e-01;SOR=0.720;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,160:160:99:5186,481,0
chr1	1846582	rs2748987	A	G	3757.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.95;SOR=3.779;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1162,93,0
chr1	1846765	rs2247560	G	A	7390.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.230e-01;DB;DP=158;ExcessHet=1.5490;FS=6.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=0.671;SOR=0.763;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,158:158:99:5044,474,0
chr1	1847656	rs2803297	C	T	606.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.72;ReadPosRankSum=-1.465e+00;SOR=2.093;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:403,33,0
chr1	1847856	rs2748986	G	T	9483.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.600e-02;DB;DP=170;ExcessHet=3.9794;FS=0.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=0.844;SOR=0.645;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5414,510,0
chr1	1848109	rs2803296	G	C	8864.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.429;DB;DP=148;ExcessHet=3.9794;FS=1.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=1.62;SOR=0.830;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:5481,444,0
chr1	1848734	rs941532	A	G	584.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=5.421;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	1849529	rs28640257	A	G	4687.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.939e+00;DB;DP=105;ExcessHet=1.5490;FS=2.302;MQ=60.00;MQRankSum=0.00;QD=25.34;ReadPosRankSum=-7.890e-01;SOR=0.493;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3539,315,0
chr1	1849923	rs72634869	C	A	2866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.610e-01;DB;DP=219;ExcessHet=3.0103;FS=0.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.864;SOR=0.738;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,112:219:99:2875,0,2691
chr1	1850428	rs2295363	A	G	2788.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.594;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=2.65;SOR=0.745;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1673,159,0
chr1	1850627	.	CAGCGGCAGG	C	1928.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;DP=32;ExcessHet=1.5490;FS=2.829;MQ=60.00;MQRankSum=0.00;QD=32.69;ReadPosRankSum=-9.750e-01;SOR=1.323;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:32:98:1440,98,0
chr1	1853615	rs113294876	T	TCTGA	2885.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.85;SOR=4.582;VQSLOD=4.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:60:874,60,0
chr1	1854109	rs2803348	A	G	9669.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=189;ExcessHet=3.9794;FS=1.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-8.290e-01;SOR=0.751;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,188:189:99:5461,525,0
chr1	1854321	rs2250833	A	G	2699.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=2.015;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1021,78,0
chr1	1855450	rs28423370	A	G	2364.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=4.174;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:897,69,0
chr1	1856227	rs752966	C	T	363.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.071;SOR=1.179;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr1	1858309	rs941530	T	C	13219.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.519e+00;DB;DP=236;ExcessHet=3.9794;FS=3.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=1.02;SOR=0.654;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,236:236:99:7358,707,0
chr1	1859296	rs2748984	T	C	5165.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.98;DB;DP=85;ExcessHet=1.5490;FS=1.506;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.31;ReadPosRankSum=-2.490e-01;SOR=1.302;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3458,255,0
chr1	1860087	rs2748983	C	T	3516.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.037;DB;DP=67;ExcessHet=3.9794;FS=4.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.089;SOR=0.425;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1977,200,0
chr1	1861582	rs2803295	C	T	4587.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=99;ExcessHet=1.5490;FS=1.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=-4.560e-01;SOR=0.918;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3184,297,0
chr1	1870210	rs2803323	G	A	3539.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.44;SOR=4.871;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:1005,83,0
chr1	1871979	rs2748982	G	A	2151.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.260;DB;DP=49;ExcessHet=1.5490;FS=0.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=0.920;SOR=0.888;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1412,105,0
chr1	1873453	rs2748981	G	A	1155.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.19;DB;DP=22;ExcessHet=1.5490;FS=1.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=-2.390e-01;SOR=1.276;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:763,66,0
chr1	1873514	rs2803326	A	G	1882.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.920e-01;DB;DP=44;ExcessHet=1.5490;FS=3.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=0.097;SOR=0.333;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1312,132,0
chr1	1873525	rs2803327	T	C	1956.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.564;DB;DP=48;ExcessHet=1.5490;FS=1.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=1.08;SOR=0.503;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1378,144,0
chr1	1873697	rs2748980	G	A	1638.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=1.54;SOR=0.848;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:1873697_G_A:1058,72,0:1873697
chr1	1873699	rs2748979	G	C	1638.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=24;ExcessHet=1.5490;FS=1.079;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=1.02;SOR=0.895;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:1873697_G_A:1058,72,0:1873697
chr1	1875621	rs2803334	G	C	809.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.44;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.40;ReadPosRankSum=0.488;SOR=0.818;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:42:1|1:1875621_G_C:563,42,0:1875621
chr1	1875655	rs2803335	C	T	1248.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.706e+00;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.74;ReadPosRankSum=-8.580e-01;SOR=0.470;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:1875621_G_C:898,69,0:1875621
chr1	1875858	rs2803336	C	G	10047.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=160;ExcessHet=1.5490;FS=3.357;MQ=60.00;MQRankSum=0.00;QD=30.08;ReadPosRankSum=-1.350e-01;SOR=0.522;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,160:160:99:1|1:1875858_C_G:7220,488,0:1875858
chr1	1875859	rs2803337	A	G	10047.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;DB;DP=162;ExcessHet=1.5490;FS=3.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.99;ReadPosRankSum=0.103;SOR=0.514;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,162:162:99:1|1:1875858_C_G:7220,488,0:1875858
chr1	1876114	rs2803338	C	T	715.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=-2.130e-01;SOR=0.743;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:328,27,0
chr1	1878071	rs2803340	C	T	1474.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.66;DB;DP=28;ExcessHet=1.5490;FS=2.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=1.54;SOR=0.337;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1047,84,0
chr1	1878628	rs2803341	C	T	2721.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.75;DB;DP=65;ExcessHet=1.5490;FS=4.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=0.388;SOR=0.255;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,63:65:99:2066,119,0
chr1	1886519	.	C	CGGCTCACACCGGAAGTGAGGCTCACACCGGAAGTGA	1940.01	PASS	AC=2;AF=1.00;AN=2;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.29;SOR=0.738;VQSLOD=4.58;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,22:22:99:1439,104,0
chr1	1886756	rs142420544	G	GCTGGTGCGCGT	1818.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.17;ReadPosRankSum=-9.150e-01;SOR=0.607;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,37:84:99:1827,0,5134
chr1	1887019	rs28548017	A	G	17308.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.33;SOR=1.011;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5916,510,0
chr1	1888369	rs2803285	A	G	3665.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.17;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=1.12;SOR=7.636;VQSLOD=14.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1051,78,0
chr1	1900186	rs35269416	T	C	812.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=88;ExcessHet=3.0103;FS=4.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=0.573;SOR=1.158;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,33:88:99:821,0,1340
chr1	1900211	rs78791970	C	T	886.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650e-01;DB;DP=92;ExcessHet=3.0103;FS=5.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-1.840e-01;SOR=0.936;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,36:92:99:895,0,1507
chr1	1900232	rs16824588	T	C	2386.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787e+00;DB;DP=92;ExcessHet=3.9794;FS=0.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-5.140e-01;SOR=0.617;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,37:92:99:851,0,1490
chr1	1900454	rs6681749	A	G	627.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:95:110,0,95
chr1	1901945	rs13303126	T	A	507.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=11;ExcessHet=3.9794;FS=1.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.361;SOR=1.449;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:179,0,108
chr1	1903303	rs4648603	C	T	1165.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.135e+00;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.689;SOR=0.368;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:564,0,501
chr1	1903357	rs13303329	G	C	1388.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.081e+00;DB;DP=84;ExcessHet=3.0103;FS=5.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=-1.570e-01;SOR=1.695;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,41:84:99:1397,0,1392
chr1	1905790	rs16824603	A	G	630.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.84;DB;DP=32;ExcessHet=3.0103;FS=2.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=2.63;SOR=1.670;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:639,0,397
chr1	1918191	rs4233028	A	G	246.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=1.25;SOR=2.765;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:58:58,0,108
chr1	1918488	rs4350140	A	G	4655.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=186;ExcessHet=3.9794;FS=2.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.250;SOR=0.809;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,81:186:99:2128,0,2691
chr1	1922303	rs13303195	C	T	622.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=27;ExcessHet=3.9794;FS=9.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=-8.300e-02;SOR=1.921;VQSLOD=17.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,8:27:99:223,0,461
chr1	1922652	rs13303233	T	C	73.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.38;SOR=1.179;VQSLOD=18.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr1	1956362	rs2376805	G	A	14149.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.83;DB;DP=213;ExcessHet=3.0103;FS=4.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=-5.480e-01;SOR=0.421;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,213:213:99:6679,638,0
chr1	1957037	rs2229110	T	C	27839.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=447;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=0.732;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,447:447:99:14599,1341,0
chr1	1957219	rs3831907	CG	C	1563.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-01;DB;DP=104;ExcessHet=3.0103;FS=5.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-1.400e-01;SOR=0.285;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,53:104:99:1572,0,1480
chr1	1957299	rs3820007	C	T	955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=33;ExcessHet=3.9794;FS=3.158;MQ=60.00;MQRankSum=0.00;QD=15.92;ReadPosRankSum=0.675;SOR=1.770;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:382,0,580
chr1	1958993	rs150102040	C	T	816.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=60;ExcessHet=3.0103;FS=2.326;MQ=60.00;MQRankSum=0.00;QD=13.60;ReadPosRankSum=-1.198e+00;SOR=1.082;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:825,0,719
chr1	1959261	rs28574670	A	G	1798.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.679e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.05;ReadPosRankSum=-4.640e-01;SOR=3.788;VQSLOD=15.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:700,51,0
chr1	1959861	rs138736063	G	GC	299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DB;DP=11;ExcessHet=3.9794;FS=3.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-8.700e-02;SOR=0.160;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:153,0,190
chr1	1960926	rs28581504	T	C	4386.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.711e+00;DB;DP=41;ExcessHet=3.0103;FS=6.621;MQ=59.78;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.98;ReadPosRankSum=0.724;SOR=0.157;VQSLOD=4.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1533,123,0
chr1	1988168	.	CT	C	199.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870e-01;DP=24;ExcessHet=6.9897;FS=1.384;MQ=59.89;MQRankSum=0.00;QD=4.54;ReadPosRankSum=0.982;SOR=0.374;VQSLOD=5.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:24:99:102,0,270
chr1	2005740	rs2459986	T	C	2325.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.210e-01;DB;DP=44;ExcessHet=3.9794;FS=1.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=1.14;SOR=0.513;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1167,129,0
chr1	2105185	.	T	A	31.48	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=15.74;SOR=2.303;VQSLOD=13.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:45,6,0
chr1	2106840	rs12135175	T	C	1619.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.50;SOR=7.378;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr1	2106896	rs12135178	T	C	666.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.19;SOR=5.670;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	2118539	rs2503699	T	C	2167.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=26;ExcessHet=3.0103;FS=5.125;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=0.721;SOR=1.655;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:325,0,329
chr1	2121118	rs2503701	C	T	10251.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.520e-01;DB;DP=121;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=-4.370e-01;SOR=0.632;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,72:121:99:1800,0,1181
chr1	2144788	rs262695	A	G	4297.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=178;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.05;SOR=0.691;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,87:178:99:2332,0,2310
chr1	2144982	rs2480714	G	T	11257.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DB;DP=167;ExcessHet=3.0103;FS=3.385;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=1.52;SOR=1.057;VQSLOD=6.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,78:167:99:1930,0,2162
chr1	2160390	rs28384811	C	G	3473.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=221;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.72;ReadPosRankSum=-1.792e+00;SOR=0.713;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,113:221:99:3482,0,3184
chr1	2234251	rs1496555	A	G	2159.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.23;ReadPosRankSum=1.49;SOR=0.776;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:258,0,395
chr1	2263888	rs903904	C	T	319.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-1.390e-01;SOR=0.465;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:107,0,188
chr1	2268570	rs12091632	A	G	180.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=-4.140e-01;SOR=0.582;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:2268570_A_G:188,0,158:2268570
chr1	2268580	rs12085675	G	A	151.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:2268570_A_G:159,0,161:2268570
chr1	2286947	rs1039100	A	G	6031.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=88;ExcessHet=3.0103;FS=0.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=0.534;SOR=0.591;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,56:88:99:1593,0,724
chr1	2288747	rs2645086	T	C	1012.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060e+00;DB;DP=20;ExcessHet=6.9897;FS=10.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-8.610e-01;SOR=0.037;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:299,0,382
chr1	2290255	rs139402066	C	A	163.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-1.188e+00;SOR=1.371;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:172,0,197
chr1	2290288	rs2840544	T	C	305.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=7;ExcessHet=6.9897;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-6.520e-01;SOR=2.670;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:91:91,0,110
chr1	2303347	.	CA	C	122.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DP=7;ExcessHet=4.7712;FS=2.199;MQ=60.00;MQRankSum=0.00;QD=6.47;ReadPosRankSum=1.35;SOR=0.184;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:57:59,0,57
chr1	2303566	rs2840534	A	G	203.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=1.37;SOR=0.368;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:212,0,202
chr1	2304198	.	GACC	G	1003.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482e+00;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.31;ReadPosRankSum=-6.110e-01;SOR=1.670;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:435,0,699
chr1	2306152	rs12031614	C	T	819.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=-1.500e-02;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,194
chr1	2316315	rs2843126	A	G	638.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.515e+00;DB;DP=13;ExcessHet=3.9794;FS=2.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=1.02;SOR=0.180;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:439,39,0
chr1	2317069	rs16825089	A	C	913.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.331e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=1.25;SOR=0.479;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:397,0,453
chr1	2322726	rs71630976	G	A	1216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.189;SOR=0.592;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,24:60:99:650,0,952
chr1	2328714	rs2645081	A	G	5566.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.84;SOR=3.064;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1615,147,0
chr1	2332640	rs59940476	T	C	847.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.90;SOR=3.528;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:349,33,0
chr1	2333944	rs78924098	T	TC	1633.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.34;SOR=6.399;VQSLOD=5.40;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,14:14:42:471,42,0
chr1	2337032	rs1129171	C	T	1899.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DB;DP=22;ExcessHet=3.9794;FS=3.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=0.164;SOR=1.298;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:339,0,292
chr1	2337277	rs11586985	C	T	703.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460e-01;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=0.239;SOR=0.792;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,31:67:99:712,0,928
chr1	2338569	rs2494427	T	C	4735.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.31;SOR=7.186;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1660,114,0
chr1	2340200	rs2494598	T	C	13287.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123e+00;DB;DP=218;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=2.56;SOR=0.645;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,118:218:99:2637,0,2215
chr1	2340504	rs12092052	C	T	766.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=8;ExcessHet=3.9794;FS=2.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=0.703;SOR=0.148;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:90:180,0,90
chr1	2418625	rs7512269	C	T	2167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070e-01;DB;DP=174;ExcessHet=3.0103;FS=5.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-1.902e+00;SOR=1.122;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,89:174:99:2176,0,2192
chr1	2420590	rs10752744	T	C	4372.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524e+00;DB;DP=46;ExcessHet=3.0103;FS=1.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.16;ReadPosRankSum=0.596;SOR=1.002;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:734,0,682
chr1	2422614	rs2477699	G	A	3666.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380e-01;DB;DP=51;ExcessHet=3.0103;FS=0.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=-9.140e-01;SOR=0.619;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,16:51:99:401,0,1032
chr1	2426766	rs3001347	A	G	610.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.460e-01;DB;DP=31;ExcessHet=3.9794;FS=7.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-4.870e-01;SOR=0.146;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:313,0,534
chr1	2428874	rs2477706	T	C	5007.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=-1.574e+00;SOR=3.962;VQSLOD=-1.862e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,32:53:99:851,0,471
chr1	2430617	rs2296442	C	T	3439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DB;DP=212;ExcessHet=3.9794;FS=2.847;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=0.053;SOR=0.849;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:124,88:212:99:2016,0,3095
chr1	2433900	rs12736998	C	T	2131.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=90;ExcessHet=3.9794;FS=1.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.589;SOR=0.594;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1084,0,1044
chr1	2434744	rs3814298	C	T	103.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:112,0,29
chr1	2452569	rs2985862	T	C	4368.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.150e-01;DB;DP=51;ExcessHet=3.0103;FS=9.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=0.999;SOR=1.867;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:687,0,725
chr1	2487663	rs2227312	C	A	10103.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=188;ExcessHet=3.9794;FS=0.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=0.474;SOR=0.759;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,88:188:99:2190,0,2456
chr1	2487766	rs2227313	T	C	13411.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=216;ExcessHet=3.9794;FS=1.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=0.256;SOR=0.655;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,114:216:99:2919,0,2351
chr1	2488153	rs4870	A	G	7207.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=88;ExcessHet=3.9794;FS=4.149;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=-5.700e-02;SOR=0.467;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,57:88:99:1595,0,771
chr1	2490898	rs2257763	C	A	7681.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=160;ExcessHet=3.9794;FS=18.274;MQ=59.84;MQRankSum=-1.063e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=-2.173e+00;SOR=1.695;VQSLOD=-9.690e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:90,70:160:99:1854,0,2100
chr1	2490942	rs2281852	C	A	12410.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=235;ExcessHet=3.9794;FS=4.426;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.059;SOR=1.053;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:126,109:235:99:2800,0,3111
chr1	2491205	rs2234161	C	T	23655.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=361;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=1.25;SOR=0.640;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,216:361:99:5666,0,3617
chr1	2494330	rs2234167	G	A	3048.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-01;DB;DP=326;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=-1.490e-01;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-2.694e+00;SOR=0.712;VQSLOD=1.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:181,145:326:99:3057,0,4237
chr1	2494785	rs8725	G	A	3990.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.190e-01;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=0.761;SOR=0.918;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:916,0,887
chr1	2518186	rs10752746	A	G	805.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.94;SOR=3.352;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:380,30,0
chr1	2522392	rs2296443	G	A	493.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=2.05;SOR=0.495;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:502,0,658
chr1	2527678	rs2260976	A	G	2323.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.489e+00;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=-7.210e-01;SOR=0.916;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1746,141,0
chr1	2528133	rs2843401	T	C	8483.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=198;ExcessHet=1.5490;FS=0.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=1.84;SOR=0.763;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,196:198:99:5747,545,0
chr1	2530341	rs34705971	A	AG	855.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=18;ExcessHet=1.5490;FS=3.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=0.914;SOR=1.765;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:670,54,0
chr1	2560735	rs4648657	A	G	1869.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.560e-01;DB;DP=44;ExcessHet=1.5490;FS=0.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=0.674;SOR=0.519;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1379,132,0
chr1	2560882	rs4648658	G	A	5457.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.188e+00;DB;DP=100;ExcessHet=1.5490;FS=2.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.49;ReadPosRankSum=1.41;SOR=0.488;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,100:100:99:1|1:2560882_G_A:4015,302,0:2560882
chr1	2560903	rs4648659	T	G	5160.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.920e-01;DB;DP=89;ExcessHet=1.5490;FS=0.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.26;ReadPosRankSum=2.01;SOR=0.572;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,89:89:99:1|1:2560882_G_A:3824,276,0:2560882
chr1	2561259	rs35955733	GCCC	G	202.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.69;ReadPosRankSum=-9.670e-01;SOR=2.303;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	2561286	rs28532547	T	G	102.15	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.05;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
chr1	2573199	rs4648662	A	G	14473.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=0.743;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5106,483,0
chr1	2700117	rs4648502	C	G	1631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.902e+00;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=2.10;SOR=0.632;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:961,0,999
chr1	2704471	rs12748553	C	T	302.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-7.800e-02;SOR=1.329;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:255,0,182
chr1	2984087	rs2297829	C	A	10838.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=344;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.51;ReadPosRankSum=1.57;SOR=0.501;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,343:344:99:10855,1022,0
chr1	2985542	rs36116688	AG	A	239.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.090e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.00;ReadPosRankSum=-9.520e-01;SOR=1.473;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:170,18,0
chr1	2985885	rs7413494	C	G	1096.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=2.235;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1113,99,0
chr1	3301721	rs2282198	C	T	3584.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.80;SOR=2.419;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3601,309,0
chr1	3310928	rs145881072	C	CCG	1132.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.96;SOR=1.697;VQSLOD=3.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:570,39,0
chr1	3311212	rs2493253	C	G	1291.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=17;ExcessHet=3.0103;FS=1.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=0.372;SOR=1.214;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:537,51,0
chr1	3311261	rs6702992	C	T	523.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.28;SOR=3.912;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr1	3312914	rs871822	T	G	3121.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=0.734;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3138,294,0
chr1	3319601	rs148238606	ACCCTCCTCTGAGTCTTCCTCCCCTTCCCGTG	A	623.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.586;DB;DP=11;ExcessHet=1.5490;FS=2.817;MQ=60.00;MQRankSum=0.00;QD=28.36;ReadPosRankSum=0.728;SOR=0.153;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:36:495,36,0
chr1	3319674	rs12562397	C	T	497.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=-1.210e+00;SOR=0.324;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:3319674_C_T:244,21,0:3319674
chr1	3319681	rs12562399	C	G	254.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.74;SOR=3.912;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:3319674_C_T:135,9,0:3319674
chr1	3328358	rs870124	T	C	33464.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=491;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=1.31;SOR=0.699;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:278,213:491:99:5036,0,6697
chr1	3334892	rs2483230	A	G	260.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=1.609;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr1	3342109	rs41303861	G	T	1553.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DB;DP=118;ExcessHet=3.0103;FS=2.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-7.650e-01;SOR=0.440;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,60:118:99:1562,0,1492
chr1	3342530	rs2244013	G	A	409.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=1.54;SOR=0.818;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:153,0,247
chr1	3383038	rs947351	G	A	254.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DB;DP=11;ExcessHet=6.9897;FS=4.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.191;SOR=0.167;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:56:56,0,228
chr1	3383593	rs3893316	G	T	3382.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.96;SOR=6.759;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1079,87,0
chr1	3383665	rs7550948	G	A	9295.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=2.294;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3203,306,0
chr1	3383898	rs6424078	A	G	10021.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.44;SOR=2.278;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3318,306,0
chr1	3385129	rs2493250	G	A	346.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.87;SOR=2.833;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:3385129_G_A:45,3,0:3385129
chr1	3385139	rs2487673	G	T	388.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=3.056;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:3385129_G_A:45,3,0:3385129
chr1	3385250	rs1417897	C	A	1085.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757e+00;DB;DP=13;ExcessHet=6.9897;FS=1.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=0.083;SOR=0.461;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:102,0,321
chr1	3385256	rs1891143	A	G	1740.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=-6.270e-01;SOR=1.412;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:270,0,219
chr1	3385330	rs2493249	T	C	5912.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=1.495;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1801,168,0
chr1	3389727	rs2185639	C	T	20171.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=224;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.02;SOR=0.826;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,224:224:99:6638,671,0
chr1	3390238	rs2493323	T	A	8466.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=1.609;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2580,261,0
chr1	3391022	rs2493322	G	A	771.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.89;SOR=5.994;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr1	3394250	rs10909948	C	T	413.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.89;SOR=4.804;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:213,15,0
chr1	3394456	rs4638054	T	C	5511.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=2.073;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2289,198,0
chr1	3394640	rs4422946	A	G	12917.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=1.323;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4405,414,0
chr1	3394674	rs4534324	T	C	9177.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=1.972;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3008,291,0
chr1	3395039	rs10797395	G	A	38210.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=437;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=29.62;SOR=0.878;VQSLOD=4.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,437:437:99:12060,1281,0
chr1	3395229	rs4553117	T	C	5457.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.43;SOR=6.036;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1699,138,0
chr1	3395973	rs70938094	ACC	A	11812.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150e-01;DB;DP=78;ExcessHet=3.0103;FS=5.435;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.47;ReadPosRankSum=-8.630e-01;SOR=0.141;VQSLOD=6.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3363,234,0
chr1	3396609	rs881978	C	T	2151.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=6.479;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:709,51,0
chr1	3397188	rs2487677	T	C	6409.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=3.328;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2245,180,0
chr1	3414105	rs10909951	C	T	4489.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=185;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=2.45;SOR=0.682;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,96:185:99:2417,0,2014
chr1	3416449	rs7553399	C	A	8007.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=162;ExcessHet=3.9794;FS=1.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-5.030e-01;SOR=0.543;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,61:162:99:1458,0,2482
chr1	3417131	rs2821031	A	G	7959.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433e+00;DB;DP=131;ExcessHet=3.9794;FS=4.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=1.21;SOR=0.471;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,75:131:99:1897,0,1398
chr1	3417211	rs61742846	G	A	2147.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=182;ExcessHet=3.0103;FS=6.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-7.940e-01;SOR=1.124;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,83:182:99:2156,0,2393
chr1	3417960	rs4648507	G	A	7132.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=105;ExcessHet=3.9794;FS=2.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-1.350e-01;SOR=0.878;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,52:105:99:1338,0,1256
chr1	3417998	rs147592725	C	A	803.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626e+00;DB;DP=64;ExcessHet=3.0103;FS=2.293;MQ=60.00;MQRankSum=0.00;QD=12.55;ReadPosRankSum=-1.950e-01;SOR=0.416;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:812,0,841
chr1	3418171	rs7516662	A	G	2230.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=1.791;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:648,45,0
chr1	3421586	rs6669870	C	T	1152.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220e-01;DB;DP=36;ExcessHet=3.9794;FS=0.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-3.360e-01;SOR=0.530;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,10:36:99:210,0,837
chr1	3421658	rs2821009	A	T	2665.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=92;ExcessHet=3.9794;FS=2.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=1.02;SOR=0.512;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1146,0,1345
chr1	3424388	rs947345	G	A	3945.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=303;ExcessHet=3.0103;FS=4.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=1.35;SOR=0.720;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,159:303:99:3954,0,3230
chr1	3425430	rs2794358	A	G	731.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=27;ExcessHet=3.9794;FS=6.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-3.160e-01;SOR=0.202;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:466,0,467
chr1	3428160	rs2820999	T	G	3372.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=133;ExcessHet=3.9794;FS=3.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=2.20;SOR=0.473;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,72:133:99:1891,0,1584
chr1	3428424	rs4648391	G	T	2708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.709e+00;DB;DP=62;ExcessHet=3.9794;FS=4.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=0.204;SOR=1.371;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,37:62:99:0|1:3428424_G_T:1501,0,1893:3428424
chr1	3428428	rs4648514	C	T	2682.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.698e+00;DB;DP=63;ExcessHet=3.9794;FS=5.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=0.549;SOR=1.424;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,37:63:99:0|1:3428424_G_T:1466,0,1896:3428424
chr1	3428608	rs11585362	G	A	2890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=114;ExcessHet=3.9794;FS=3.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.068;SOR=0.472;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,60:114:99:1332,0,1316
chr1	3432278	rs12045137	C	G	468.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.272;SOR=0.507;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:128,0,434
chr1	3440647	rs2794322	T	C	2933.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.92;SOR=2.038;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1084,93,0
chr1	3440943	rs12049449	A	C	413.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.732;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:66:66,0,182
chr1	3477414	rs138354618	GGGCT	G	1668.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.77;ReadPosRankSum=-6.680e-01;SOR=1.058;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,13:29:99:486,0,853
chr1	3496328	rs2821051	T	C	2307.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.110e-01;DB;DP=34;ExcessHet=3.9794;FS=2.919;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=1.91;SOR=0.446;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:536,0,588
chr1	3496479	rs2794340	T	C	4099.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=84;ExcessHet=3.0103;FS=2.713;MQ=59.95;MQRankSum=0.695;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=1.31;SOR=0.936;VQSLOD=2.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,26:84:99:601,0,1535
chr1	3512188	rs7554061	C	T	1567.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.53;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=1.43;SOR=0.559;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:575,0,749
chr1	3518857	rs2821014	A	C	1910.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=4.804;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:726,51,0
chr1	3518944	rs7521546	T	C	6106.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=2.441;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1575,153,0
chr1	3519179	rs2794330	C	T	2951.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=139;ExcessHet=3.9794;FS=2.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.079;SOR=0.898;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,60:139:99:1433,0,1951
chr1	3527944	rs10797402	C	G	18371.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=1.288;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5693,531,0
chr1	3528082	rs10797403	T	C	7996.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.12;SOR=1.600;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2273,219,0
chr1	3541915	rs188462649	C	T	218.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.13;ReadPosRankSum=1.86;SOR=1.230;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:227,0,307
chr1	3543778	rs4648541	T	G	71.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.78;SOR=0.693;VQSLOD=18.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	3543887	rs149914769	TAAATAAAAAC	T	465.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.53;SOR=1.473;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,12:13:2:476,2,0
chr1	3544235	rs5772111	TA	T	985.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=73;ExcessHet=3.0103;FS=2.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.708;SOR=1.036;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,34:73:99:994,0,1164
chr1	3545175	rs147637374	GTTCTGGGAGCTCCTCCCCC	G	1763.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.86;SOR=3.611;VQSLOD=4.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:35:493,35,0
chr1	3547769	rs12079436	A	G	2323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404e+00;DB;DP=116;ExcessHet=3.0103;FS=1.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=1.17;SOR=0.483;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,78:116:99:2332,0,984
chr1	3548050	rs76211155	G	A	1293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.043e+00;DB;DP=132;ExcessHet=3.0103;FS=3.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=1.10;SOR=0.465;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,59:132:99:1302,0,1911
chr1	3548136	rs2760321	T	C	9768.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=1.152;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2748,255,0
chr1	3548449	rs2821071	A	G	126.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=9.04;SOR=3.912;VQSLOD=9.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	3549030	rs10909993	G	A	481.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=1.94;SOR=1.085;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:490,0,305
chr1	3549093	rs35197479	GC	G	196.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-7.800e-02;SOR=1.022;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:205,0,132
chr1	3549852	rs2273954	G	A	715.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=35;ExcessHet=3.0103;FS=8.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=-1.533e+00;SOR=3.169;VQSLOD=14.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:724,0,347
chr1	3551308	rs12085065	A	C	97.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:72:106,0,72
chr1	3551898	rs28446481	C	A	1046.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=68;ExcessHet=3.0103;FS=1.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=0.854;SOR=0.858;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,28:68:99:0|1:3551898_C_A:1055,0,3657:3551898
chr1	3551901	rs76802820	C	T	1068.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.94;ReadPosRankSum=0.477;SOR=0.753;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,28:67:99:0|1:3551898_C_A:1077,0,3654:3551898
chr1	3551905	rs28503229	A	G	1074.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.980e-01;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.465;SOR=0.693;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,26:64:99:0|1:3551898_C_A:1083,0,3562:3551898
chr1	3555470	rs57595901	C	T	261.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.460e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-1.934e+00;SOR=0.693;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:270,0,420
chr1	3555593	rs141003288	CTGT	C	78.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.14;SOR=2.303;VQSLOD=5.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	3563512	rs34514629	GC	G	2155.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.69;ReadPosRankSum=-1.185e+00;SOR=1.014;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,8:17:99:0|1:3563512_GC_G:273,0,354:3563512
chr1	3563514	rs12087237	A	G	282.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.701e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=1.09;SOR=0.804;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,9:17:99:1|0:3563512_GC_G:291,0,309:3563512
chr1	3564231	rs12086552	C	G	525.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.88;ReadPosRankSum=0.406;SOR=1.329;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,16:22:99:534,0,163
chr1	3566279	rs7537171	C	T	104.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:113,0,68
chr1	3566625	rs145464993	AGCAGGCTG	A	8425.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DB;DP=105;ExcessHet=3.0103;FS=1.974;MQ=59.95;MQRankSum=0.00;QD=33.30;ReadPosRankSum=0.532;SOR=0.865;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,47:105:99:1799,0,2789
chr1	3566706	rs2251098	G	A	2178.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.67;ReadPosRankSum=-5.190e-01;SOR=1.221;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:331,0,515
chr1	3599514	rs57596460	C	T	1265.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=52;ExcessHet=3.9794;FS=1.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=1.62;SOR=0.475;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:627,0,791
chr1	3599750	rs57492244	TG	T	2472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.550e-01;DB;DP=85;ExcessHet=3.9794;FS=3.911;MQ=60.00;MQRankSum=0.00;QD=13.97;ReadPosRankSum=0.440;SOR=0.451;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,51:85:99:1334,0,800
chr1	3607532	rs12122732	G	A	2022.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-1.800e-01;SOR=0.654;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,79:175:99:2031,0,2403
chr1	3638674	rs1801174	C	T	31685.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.430e-01;DB;DP=414;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=1.64;SOR=0.668;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,414:414:99:12781,1238,0
chr1	3638821	rs116167852	C	G	1108.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.45;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.885;SOR=0.349;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,33:66:99:1117,0,1014
chr1	3638834	rs12737840	C	T	866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.38;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=-6.840e-01;SOR=0.624;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:875,0,842
chr1	3639884	rs149926186	T	C	1742.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;DB;DP=146;ExcessHet=3.0103;FS=2.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-5.370e-01;SOR=0.961;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,71:146:99:1751,0,1789
chr1	3640085	rs6424091	C	G	3287.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.87;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=59.53;MQRankSum=-1.380e+00;NEGATIVE_TRAIN_SITE;QD=31.31;ReadPosRankSum=-1.311e+00;SOR=0.690;VQSLOD=-8.548e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1493,114,0
chr1	3643465	rs149311741	C	CGATGGATGGGTG	1674.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.512;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.40;ReadPosRankSum=-1.960e-01;SOR=0.963;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:36:539,36,0
chr1	3644291	rs115639865	C	A	2658.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300e-01;DB;DP=215;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-3.480e-01;SOR=0.709;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,109:215:99:2667,0,2533
chr1	3644349	rs2181486	A	G	9787.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.184e+00;DB;DP=167;ExcessHet=3.0103;FS=0.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.82;ReadPosRankSum=-7.400e-01;SOR=0.785;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,167:167:99:5071,501,0
chr1	3644374	rs2146657	A	G	7217.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.633e+00;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.99;ReadPosRankSum=0.016;SOR=0.657;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3829,350,0
chr1	3644660	rs115818333	T	C	832.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.186e+00;DB;DP=88;ExcessHet=3.0103;FS=4.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-4.120e-01;SOR=0.353;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,39:88:99:841,0,1383
chr1	3644754	rs12048341	T	C	1664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.120e-01;DB;DP=194;ExcessHet=3.0103;FS=5.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=-1.203e+00;SOR=0.432;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,78:194:99:1673,0,2784
chr1	3644805	rs2236366	A	G	3027.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;DB;DP=164;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=0.932;SOR=0.684;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,58:164:99:1230,0,2672
chr1	3645052	rs12095248	A	G	232.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.936;SOR=0.495;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:140,0,184
chr1	3645835	rs2254530	C	A	3061.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.725e+00;DB;DP=38;ExcessHet=1.5490;FS=9.367;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.65;ReadPosRankSum=1.52;SOR=0.078;VQSLOD=17.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:673,0,480
chr1	3645844	rs2096224	G	A	4239.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.64;SOR=3.442;VQSLOD=18.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1711,126,0
chr1	3646137	rs11589885	C	T	11228.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DB;DP=227;ExcessHet=1.5490;FS=1.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-1.154e+00;SOR=0.799;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,109:227:99:2936,0,3022
chr1	3646192	rs1885867	G	A	14953.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830e+00;DB;DP=167;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=0.737;SOR=0.656;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:85,82:167:99:0|1:3646192_G_A:3125,0,3033:3646192
chr1	3646214	rs1885866	T	C	14181.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657e+00;DB;DP=153;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=0.460;SOR=0.629;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:72,81:153:99:0|1:3646192_G_A:3043,0,2756:3646192
chr1	3646291	rs1885865	G	A	7484.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e-01;DB;DP=126;ExcessHet=3.9794;FS=2.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=1.77;SOR=0.848;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,60:126:99:1515,0,1800
chr1	3646518	rs79198967	G	A	2267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;DB;DP=148;ExcessHet=3.0103;FS=1.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-5.720e-01;SOR=0.630;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,85:148:99:2276,0,1532
chr1	3647262	.	G	A	66.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.30;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:75,0,34
chr1	3647419	rs41301973	G	A	665.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=43;ExcessHet=3.0103;FS=1.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.538;SOR=1.071;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,24:43:99:674,0,473
chr1	3647877	rs7517037	T	C	360.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352e+00;DB;DP=22;ExcessHet=3.0103;FS=1.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=1.54;SOR=0.207;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:369,0,376
chr1	3647962	rs1745813	T	C	2810.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=1.130;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1035,108,0
chr1	3648268	rs6664760	T	C	42.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.32;ReadPosRankSum=1.24;SOR=1.445;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:51:51,0,183
chr1	3649562	rs9662633	G	A	7561.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=630;ExcessHet=3.0103;FS=1.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-1.114e+00;SOR=0.864;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:338,292:630:99:7570,0,8497
chr1	3649794	rs9659687	A	C	1110.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.412e+00;DB;DP=65;ExcessHet=3.0103;FS=4.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=0.272;SOR=0.290;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1119,0,923
chr1	3649805	rs9659688	A	G	993.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=54;ExcessHet=3.0103;FS=2.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.411;SOR=0.368;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:1002,0,692
chr1	3659657	rs2298222	G	A	1070.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.334;SOR=0.787;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,44:80:99:1079,0,868
chr1	3662309	rs35508285	C	T	3191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499e+00;DB;DP=379;ExcessHet=3.0103;FS=1.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=0.214;SOR=0.600;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:224,155:379:99:3200,0,5398
chr1	3662845	rs3737589	A	G	1617.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.81;DB;DP=41;ExcessHet=1.5490;FS=2.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=0.913;SOR=0.417;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1290,123,0
chr1	3669201	rs10797410	A	G	9635.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=256;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=1.229;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,256:256:99:9652,772,0
chr1	3669205	rs10910021	C	G	3503.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=257;ExcessHet=3.0103;FS=1.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-1.841e+00;SOR=0.821;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:125,132:257:99:3512,0,3195
chr1	3669620	rs10797411	T	C	72.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:81,0,34
chr1	3670691	rs75854782	A	G	1204.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=-8.530e-01;SOR=0.671;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,51:132:99:1213,0,2009
chr1	3672156	rs4648555	C	A	1001.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.727e+00;DB;DP=64;ExcessHet=3.0103;FS=2.839;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-5.180e-01;SOR=0.351;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,34:64:99:1010,0,963
chr1	3673149	rs35440871	CAA	C	153.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.54;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:83:162,0,83
chr1	3673496	rs4648405	T	G	290.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=3.23;SOR=0.693;VQSLOD=21.71;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:299,0,322
chr1	3677933	rs1181883	T	C	3820.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.100e-02;DB;DP=97;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-1.740e-01;SOR=0.728;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2833,291,0
chr1	3679139	rs1181879	T	C	987.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.33;ReadPosRankSum=0.733;SOR=0.793;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:3679139_T_C:553,45,0:3679139
chr1	3679146	rs4648556	G	A	223.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940e-01;DB;DP=15;ExcessHet=3.0103;FS=2.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=1.52;SOR=0.588;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,9:15:99:0|1:3679139_T_C:232,0,138:3679139
chr1	3679307	rs4648557	T	C	52.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;QD=5.81;ReadPosRankSum=-1.242e+00;SOR=0.959;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:61:61,0,185
chr1	3679461	rs4648558	A	T	181.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=8;ExcessHet=3.0103;FS=17.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=0.272;SOR=3.585;VQSLOD=11.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:190,0,107
chr1	3679477	rs6699377	G	T	83.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-4.140e-01;SOR=0.880;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:92:92,0,199
chr1	3679514	rs6699385	G	C	94.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=9;ExcessHet=3.0103;FS=6.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-7.510e-01;SOR=0.859;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:103,0,236
chr1	3683690	rs1181873	A	C	2196.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=46;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=0.781;SOR=0.749;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,27:46:99:878,0,580
chr1	3687739	rs1175552	C	A	86.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=1.93;SOR=0.368;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:95:95,0,172
chr1	3691727	rs1175549	A	C	340.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-3.520e-01;SOR=1.609;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:349,0,377
chr1	3701491	rs2996426	A	G	768.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.80;ReadPosRankSum=-3.360e-01;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:196,0,221
chr1	3701557	rs34940702	CA	C	43.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=35;ExcessHet=3.0103;FS=3.146;MQ=60.00;MQRankSum=0.00;QD=1.31;ReadPosRankSum=0.522;SOR=1.218;VQSLOD=4.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,6:35:52:52,0,652
chr1	3703334	rs7549076	G	A	429.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=19;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=0.868;SOR=1.781;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,11:19:99:0|1:3703334_G_A:438,0,524:3703334
chr1	3703337	rs2368537	G	C	1513.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430e+00;DB;DP=20;ExcessHet=1.5490;FS=4.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.28;ReadPosRankSum=1.68;SOR=1.981;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,11:20:99:0|1:3703334_G_A:435,0,558:3703334
chr1	3704041	rs7527973	C	T	97.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-5.980e-01;SOR=2.093;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:76:106,0,76
chr1	3732103	rs4648409	T	C	9629.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e-01;DB;DP=233;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=0.825;SOR=0.745;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,111:233:99:2722,0,3028
chr1	3732172	rs4233019	C	T	4565.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=96;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=-3.380e-01;SOR=0.652;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,44:96:99:1148,0,1439
chr1	3732253	rs35136906	AT	A	645.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.57;ReadPosRankSum=1.74;SOR=1.775;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:12:95:95,0,115
chr1	3732596	rs6662706	G	T	1354.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=21;ExcessHet=1.5490;FS=4.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=0.320;SOR=1.733;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:373,0,217
chr1	3732639	rs6702916	T	A	2079.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.870e-01;DB;DP=30;ExcessHet=1.5490;FS=3.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-3.740e-01;SOR=1.352;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:498,0,223
chr1	3732707	rs6702935	T	C	2741.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=43;ExcessHet=1.5490;FS=0.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=-6.300e-02;SOR=0.512;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,27:43:99:668,0,377
chr1	3732782	rs6703035	T	C	2451.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=48;ExcessHet=1.5490;FS=8.008;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=0.986;SOR=0.762;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:767,0,555
chr1	3742179	rs7530291	G	A	297.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.08;ReadPosRankSum=0.598;SOR=1.802;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:105,0,96
chr1	3743109	rs2275834	A	G	4682.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.740e-01;DB;DP=62;ExcessHet=1.5490;FS=20.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.52;ReadPosRankSum=-8.420e-01;SOR=2.242;VQSLOD=10.83;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,26:62:99:0|1:3743109_A_G:1047,0,1977:3743109
chr1	3743132	rs4648344	T	C	5714.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=84;ExcessHet=1.5490;FS=9.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.47;ReadPosRankSum=-3.800e-01;SOR=1.459;VQSLOD=19.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,42:84:99:0|1:3743109_A_G:1401,0,2078:3743109
chr1	3743391	rs6688969	C	T	1226.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.25;DB;DP=107;ExcessHet=3.0103;FS=7.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.090e+00;SOR=1.402;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,43:107:99:1235,0,1592
chr1	3743433	rs5772126	T	TG	6343.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.20;ReadPosRankSum=0.251;SOR=0.691;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,26:67:99:725,0,1262
chr1	3743553	rs111326389	C	CA	211.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=0.191;SOR=0.693;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:63:220,0,63
chr1	3745721	rs2275833	C	T	496.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DB;DP=22;ExcessHet=3.0103;FS=5.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=-1.070e+00;SOR=2.303;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,16:22:99:505,0,143
chr1	3745787	rs2275832	T	C	3427.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=49;ExcessHet=1.5490;FS=0.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=0.323;SOR=0.586;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:727,0,475
chr1	3746116	rs1836	A	G	462.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.43;SOR=1.022;VQSLOD=18.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
chr1	3746254	rs2275830	T	C	2197.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=3.334;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:546,48,0
chr1	3746583	rs2275828	G	T	1897.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.64;ReadPosRankSum=0.788;SOR=0.631;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,14:23:99:0|1:3746583_G_T:541,0,336:3746583
chr1	3746585	rs2275827	T	G	321.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.97;ReadPosRankSum=-9.770e-01;SOR=1.179;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,9:23:99:1|0:3746583_G_T:330,0,561:3746583
chr1	3746589	rs2275826	C	G	3731.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.23;SOR=3.767;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:3746583_G_T:984,66,0:3746583
chr1	3747580	rs6424058	C	T	745.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.64;ReadPosRankSum=0.608;SOR=1.329;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:129,0,188
chr1	3747603	rs6413779	T	C	2302.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.19;SOR=2.869;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:644,54,0
chr1	3750167	rs2368533	G	A	747.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=5.994;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	3750215	rs35801288	AC	A	675.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.39;ReadPosRankSum=-1.026e+00;SOR=2.833;VQSLOD=4.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:198,0,127
chr1	3751278	rs2887273	C	G	308.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.22;ReadPosRankSum=-5.240e-01;SOR=3.056;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:149,0,27
chr1	3752868	.	CAAA	C	612.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.16;ReadPosRankSum=0.00;SOR=4.892;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,4:5:4:117,4,0
chr1	3753032	.	GTT	GTTT,G	639.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.487;DP=35;ExcessHet=3.0103;FS=4.265;MQ=59.47;MQRankSum=0.00;QD=9.01;ReadPosRankSum=0.795;SOR=0.270;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:7,12,8:35:51:224,110,277,51,0,519
chr1	3753136	rs2275824	A	T	3210.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=79;ExcessHet=1.5490;FS=1.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.276;SOR=0.884;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,31:79:99:853,0,1329
chr1	3755675	rs1891941	T	C	21046.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=1.228;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,229:229:99:7092,686,0
chr1	3755869	rs1891940	T	C	1715.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.54;SOR=2.891;VQSLOD=18.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:3755869_T_C:540,36,0:3755869
chr1	3755875	rs1891939	T	G	1603.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.09;SOR=2.584;VQSLOD=19.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:36:1|1:3755869_T_C:540,36,0:3755869
chr1	3756120	rs1539649	A	G	3369.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=67;ExcessHet=1.5490;FS=0.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=0.057;SOR=0.606;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,30:67:99:665,0,948
chr1	3756493	rs7535887	T	C	418.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=3.611;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
chr1	3759784	rs10797347	A	G	7767.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.83;SOR=0.941;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2444,250,0
chr1	3759889	rs60718273	T	TA	266.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.770e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.68;ReadPosRankSum=-2.240e-01;SOR=0.994;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:18:72:72,0,181
chr1	3759937	rs10909801	A	G	434.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.75;ReadPosRankSum=1.80;SOR=0.941;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,5:10:99:0|1:3759937_A_G:123,0,173:3759937
chr1	3759940	.	A	AT	188.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.59;ReadPosRankSum=1.47;SOR=0.527;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:3759937_A_G:126,0,139:3759937
chr1	3761479	rs2275822	C	T	3797.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=59;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=-9.780e-01;SOR=0.645;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,30:59:99:699,0,684
chr1	3761650	rs2275821	A	G	3222.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.88;SOR=1.361;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:908,84,0
chr1	3761772	rs7538067	C	T	343.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DB;DP=17;ExcessHet=3.0103;FS=8.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=-5.860e-01;SOR=3.442;VQSLOD=14.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:352,0,225
chr1	3764216	rs10492942	C	T	942.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306e+00;DB;DP=77;ExcessHet=3.0103;FS=3.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-6.730e-01;SOR=0.395;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,38:77:99:951,0,1108
chr1	3765095	.	C	CAAAAA	1397.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DP=31;ExcessHet=1.5490;FS=1.174;MQ=58.75;MQRankSum=-1.281e+00;QD=33.28;ReadPosRankSum=0.992;SOR=0.963;VQSLOD=0.316;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,7:31:99:318,0,990
chr1	3765549	rs4648346	G	A	444.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=4.977;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	3768719	rs1539647	T	C	1195.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=6.666;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:3768719_T_C:495,33,0:3768719
chr1	3768729	rs1539648	T	C	1236.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.30;SOR=6.736;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:3768719_T_C:536,36,0:3768719
chr1	3769231	rs6657021	A	G	276.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=4.174;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	3775454	rs4376673	C	G	8429.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=3.022;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2352,195,0
chr1	3782608	rs10909809	C	T	3511.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.706e+00;DB;DP=60;ExcessHet=1.5490;FS=2.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=-7.350e-01;SOR=0.452;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,25:60:99:685,0,1106
chr1	3786189	rs1141070	G	A	4633.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=186;ExcessHet=3.9794;FS=0.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.564;SOR=0.638;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,83:186:99:2091,0,2476
chr1	3786612	rs5013486	C	T	380.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=-5.240e-01;SOR=2.147;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:328,24,0
chr1	3788968	rs111645751	G	A	1139.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=45;ExcessHet=3.9794;FS=2.691;MQ=60.00;MQRankSum=0.00;QD=15.39;ReadPosRankSum=0.149;SOR=1.189;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:766,0,584
chr1	3789194	.	G	GCGGCCC	5256.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DP=102;ExcessHet=6.9897;FS=4.051;MQ=60.00;MQRankSum=0.00;QD=16.90;ReadPosRankSum=-3.360e+00;SOR=0.492;VQSLOD=3.48;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,51:102:99:0|1:3789194_G_GCGGCCC:1895,0,5736:3789194
chr1	3789195	.	T	TGTCCCTGCCGC	5257.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709e+00;DP=101;ExcessHet=6.9897;FS=4.893;MQ=60.00;MQRankSum=0.00;QD=17.35;ReadPosRankSum=-3.182e+00;SOR=0.474;VQSLOD=3.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,50:101:99:0|1:3789194_G_GCGGCCC:1895,0,5736:3789194
chr1	3789662	rs11581471	A	G	2268.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.98;SOR=4.066;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:540,45,0
chr1	3800242	rs3205087	A	G	3252.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=176;ExcessHet=3.9794;FS=1.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=1.58;SOR=0.605;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,72:176:99:1577,0,2557
chr1	3800480	rs7555538	G	T	453.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.70;ReadPosRankSum=0.148;SOR=0.299;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:123,0,298
chr1	3806643	rs4520357	T	A	1971.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=33;ExcessHet=1.5490;FS=4.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=0.651;SOR=0.282;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:519,0,415
chr1	3807122	rs7513321	G	A	2606.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=105;ExcessHet=3.9794;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=1.29;SOR=0.556;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,59:105:99:1621,0,1109
chr1	3807388	rs4131373	G	A	3730.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=171;ExcessHet=3.9794;FS=2.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=1.90;SOR=0.609;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,82:171:99:1928,0,2251
chr1	3807593	rs4274008	G	C	8722.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=1.120;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2593,228,0
chr1	3809110	rs59232452	C	A	57.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=45.17;MQRankSum=0.00;QD=19.19;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=-3.619e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:65,0,30
chr1	3809299	rs79308453	T	A	933.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940e+00;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-2.240e-01;SOR=0.653;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,35:71:99:0|1:3809299_T_A:942,0,1404:3809299
chr1	3809326	rs72849326	C	T	2364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=93;ExcessHet=3.9794;FS=1.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.754;SOR=0.588;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,45:93:99:1|0:3809299_T_A:1338,0,1670:3809299
chr1	3816508	rs35131135	T	C	969.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=22;ExcessHet=1.5490;FS=5.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=0.726;SOR=2.235;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:388,0,267
chr1	3816587	rs35704040	GC	G	1925.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=60;ExcessHet=3.9794;FS=3.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=2.96;SOR=1.095;VQSLOD=6.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,28:60:99:0|1:3816587_GC_G:1070,0,1385:3816587
chr1	3816598	rs112821673	A	C	2244.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=72;ExcessHet=3.9794;FS=2.757;MQ=60.00;MQRankSum=0.00;QD=17.00;ReadPosRankSum=1.99;SOR=1.061;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,31:72:99:0|1:3816587_GC_G:1247,0,1654:3816587
chr1	3816604	rs112886428	G	A	2569.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=84;ExcessHet=3.9794;FS=4.800;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.301;SOR=1.173;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,37:84:99:0|1:3816587_GC_G:1349,0,1800:3816587
chr1	3816683	rs113529609	A	G	4242.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=210;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-7.900e-02;SOR=0.692;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,89:210:99:2346,0,3075
chr1	3816892	.	TCCC	T,TC	1171.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.023;DP=15;ExcessHet=3.9794;FS=6.395;MQ=59.84;MQRankSum=0.00;QD=19.86;ReadPosRankSum=1.74;SOR=2.112;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,6,8:15:95:750,198,164,139,0,95
chr1	3816895	rs75740327	C	*,T	188	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.535e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=59.48;MQRankSum=4.01;NEGATIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=1.74;SOR=0.741;VQSLOD=-1.372e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,8:15:95:750,198,164,139,0,95
chr1	3816896	.	C	T	358.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DP=15;ExcessHet=3.9794;FS=3.078;MQ=59.67;MQRankSum=0.524;NEGATIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=1.47;SOR=0.141;VQSLOD=-1.233e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:95:95,0,183
chr1	3816950	rs75689004	C	T	103.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.43;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=1.59;SOR=0.105;VQSLOD=0.330;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:99:99,0,231
chr1	4772053	rs1061968	T	C	15601.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e+00;DB;DP=248;ExcessHet=3.0103;FS=2.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=1.70;SOR=0.528;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,103:248:99:2286,0,3633
chr1	4772717	rs242056	G	A	9746.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=168;ExcessHet=3.9794;FS=3.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=1.18;SOR=1.013;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,60:168:99:1479,0,2943
chr1	4834229	rs388631	T	C	337.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=-9.670e-01;SOR=1.112;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:76,0,30
chr1	4834606	rs389959	T	C	3618.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=169;ExcessHet=3.9794;FS=1.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.651;SOR=0.600;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,74:169:99:1740,0,2274
chr1	4847845	rs4654460	G	A	11424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=280;ExcessHet=6.9897;FS=0.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=1.65;SOR=0.630;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:153,127:280:99:3157,0,3738
chr1	5623965	rs9439613	C	T	1816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610e-01;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.227;SOR=0.732;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,31:50:99:788,0,573
chr1	5873771	rs55759711	A	G	925.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=17;ExcessHet=3.9794;FS=1.084;MQ=60.00;MQRankSum=0.00;QD=17.81;ReadPosRankSum=-4.900e-02;SOR=0.935;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:170,0,232
chr1	5934380	rs112284157	C	T	1887.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276e+00;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.383;SOR=0.641;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:772,0,968
chr1	5935162	rs1287637	A	T	1891.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.810e-01;DB;DP=27;ExcessHet=3.9794;FS=1.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=-4.480e-01;SOR=0.510;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:314,0,415
chr1	5935222	rs963030	T	C	867.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=0.322;SOR=0.678;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:102,0,293
chr1	5937091	rs1622955	T	C	6889.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=2.360;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2217,204,0
chr1	5937168	rs3747992	G	A	10838.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=1.414;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,175:175:99:5565,525,0
chr1	5937391	rs3747989	C	T	23761.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.06;SOR=1.384;VQSLOD=4.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,233:233:99:6818,695,0
chr1	5937413	rs3747988	A	C	11283.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=1.656;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:5581,555,0
chr1	5939544	rs11121915	T	G	10694.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=-5.890e-01;SOR=1.019;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3806,347,0
chr1	5939835	rs34688152	G	GCA	209.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.74;SOR=3.611;VQSLOD=5.14;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:5939835_G_GCA:225,15,0:5939835
chr1	5939837	rs11121921	G	A	457.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.25;SOR=1.981;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:5939835_G_GCA:225,15,0:5939835
chr1	5948677	rs2282281	G	A	4568.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=0.779;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1315,120,0
chr1	5964991	rs3737234	T	C	7250.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=3.475;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1979,174,0
chr1	5965179	rs11122125	A	G	599.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=2.049;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:307,24,0
chr1	5966119	rs3747987	T	C	816.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.73;SOR=6.273;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:223,18,0
chr1	5969368	.	GC	G	36.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852e+00;DP=15;ExcessHet=3.0103;FS=5.898;MQ=60.00;MQRankSum=0.00;QD=2.42;ReadPosRankSum=-6.790e-01;SOR=0.023;VQSLOD=4.17;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,2:15:45:0|1:5969368_GC_G:45,0,1489:5969368
chr1	5969372	.	C	G	36.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.852e+00;DP=15;ExcessHet=3.0103;FS=5.898;MQ=60.00;MQRankSum=0.00;QD=2.42;ReadPosRankSum=-6.790e-01;SOR=0.023;VQSLOD=20.91;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,2:15:45:0|1:5969368_GC_G:45,0,1489:5969368
chr1	5969374	.	C	CA	36.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851e+00;DP=15;ExcessHet=3.0103;FS=5.898;MQ=60.00;MQRankSum=0.00;QD=2.42;ReadPosRankSum=-8.500e-01;SOR=0.023;VQSLOD=4.11;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,2:15:45:0|1:5969368_GC_G:45,0,1489:5969368
chr1	6007446	rs551207	C	T	768.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.22;SOR=4.615;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:244,18,0
chr1	6027167	rs875574	C	A	1760.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.473e+00;DB;DP=21;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=-6.070e-01;SOR=1.402;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:722,63,0
chr1	6027252	rs875573	A	G	3994.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.619e+00;DB;DP=42;ExcessHet=3.0103;FS=7.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=-2.530e-01;SOR=1.508;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1355,126,0
chr1	6027593	rs75504751	G	A	689.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-4.540e-01;SOR=0.798;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:401,0,150
chr1	6029086	rs34702999	CA	C	1533.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.17;ReadPosRankSum=-3.710e-01;SOR=0.797;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:77:635,77,0
chr1	6029377	rs143087336	T	C	257.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.30;ReadPosRankSum=-3.720e-01;SOR=0.437;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:266,0,618
chr1	6038583	rs4908639	G	C	3431.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.221;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.25;ReadPosRankSum=-5.970e-01;SOR=3.033;VQSLOD=0.365;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,31:32:53:1172,53,0
chr1	6100313	rs1295087	A	G	418.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.90;SOR=4.804;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr1	6100458	rs12566866	G	A	996.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=25;ExcessHet=1.5490;FS=1.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=1.23;SOR=0.368;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:826,75,0
chr1	6111757	rs11589347	G	A	441.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.595e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.367;SOR=0.654;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:450,0,697
chr1	6132531	rs72630679	G	A	273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.89;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:282,0,147
chr1	6133046	rs3765453	G	C	821.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=8;ExcessHet=3.0103;FS=4.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=0.00;SOR=2.753;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:50:50,0,203
chr1	6145365	rs2294936	A	G	3514.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969e+00;DB;DP=66;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.29;ReadPosRankSum=0.122;SOR=0.826;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:848,0,1107
chr1	6145465	rs7512313	T	G	1463.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.63;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=-1.254e+00;SOR=3.664;VQSLOD=16.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:449,33,0
chr1	6149286	rs7553754	G	C	452.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=0.674;SOR=1.493;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr1	6150637	rs12081978	C	T	2683.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.25;DB;DP=69;ExcessHet=1.5490;FS=15.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=-1.936e+00;SOR=2.463;VQSLOD=11.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,25:69:99:734,0,1164
chr1	6155332	rs1555144	T	C	2042.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.30;SOR=3.037;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:910,81,0
chr1	6157282	rs749434	C	T	1310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.824e+00;DB;DP=45;ExcessHet=3.9794;FS=11.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=1.58;SOR=0.102;VQSLOD=17.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,28:45:99:785,0,558
chr1	6157434	rs2311802	C	T	6423.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=237;ExcessHet=3.9794;FS=3.325;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.220;SOR=0.955;VQSLOD=6.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,125:237:99:3232,0,2878
chr1	6158562	rs2229002	A	G	3326.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.203e+00;DB;DP=163;ExcessHet=3.9794;FS=3.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=1.42;SOR=0.734;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,77:163:99:1828,0,2341
chr1	6162054	rs6696489	T	C	5371.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=75;ExcessHet=1.5490;FS=3.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=0.129;SOR=0.441;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,32:75:99:871,0,1023
chr1	6170424	rs78789357	CG	C	2840.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=111;ExcessHet=3.9794;FS=2.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=1.16;SOR=0.875;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:59,52:111:99:1738,0,2008
chr1	6172875	rs4908515	G	A	649.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.429;SOR=0.563;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:156,0,307
chr1	6173649	rs2785580	A	G	1137.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917e+00;DB;DP=21;ExcessHet=6.9897;FS=4.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-5.720e-01;SOR=0.275;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:369,0,286
chr1	6184092	rs2843493	A	G	6314.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=129;ExcessHet=6.9897;FS=0.538;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.371;SOR=0.646;VQSLOD=6.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,84:129:99:2113,0,962
chr1	6184192	rs2273041	A	G	4805.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=124;ExcessHet=6.9897;FS=1.238;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-1.407e+00;SOR=0.778;VQSLOD=6.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,67:124:99:1673,0,1279
chr1	6184286	rs2273040	A	G	1364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=20;ExcessHet=6.9897;FS=6.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=1.04;SOR=1.848;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:367,0,271
chr1	6184920	rs2273038	C	G	97.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=15;ExcessHet=3.0103;FS=3.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=-8.500e-01;SOR=0.124;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:106,0,370
chr1	6185064	rs55930553	G	A	992.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=102;ExcessHet=3.0103;FS=1.797;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=1.44;SOR=0.981;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,41:102:99:1001,0,1674
chr1	6185532	rs2273037	G	A	1424.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445e+00;DB;DP=104;ExcessHet=3.0103;FS=1.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=3.28;SOR=0.475;VQSLOD=21.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:47,57:104:99:1433,0,1212
chr1	6186961	rs2746060	A	G	2016.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.71;SOR=7.864;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:617,45,0
chr1	6188044	rs3215558	TG	T	229.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.309;SOR=0.941;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:238,0,174
chr1	6188377	rs72632513	G	A	576.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.276e+00;DB;DP=39;ExcessHet=3.0103;FS=1.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-1.800e+00;SOR=1.071;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:585,0,579
chr1	6188546	rs2273034	G	A	967.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280e+00;DB;DP=87;ExcessHet=3.0103;FS=0.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-1.194e+00;SOR=0.883;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,37:87:99:976,0,1466
chr1	6188779	rs2273033	G	C	1042.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050e-01;DB;DP=86;ExcessHet=3.0103;FS=1.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-1.779e+00;SOR=0.493;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,39:86:99:1051,0,1315
chr1	6190611	rs1883764	A	G	577.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=0.967;SOR=0.906;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:287,24,0
chr1	6194347	rs3765452	T	G	3794.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=96;ExcessHet=6.9897;FS=2.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.082;SOR=0.554;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,40:96:99:1059,0,1417
chr1	6194494	rs75773968	G	T	385.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=1.40;SOR=0.412;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:178,0,240
chr1	6194704	rs371217497	GACCTACCATGGCGGCCACAGGC	G	1194.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=79;ExcessHet=3.0103;FS=0.990;MQ=60.00;MQRankSum=0.00;QD=15.12;ReadPosRankSum=-1.524e+00;SOR=0.527;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,33:79:99:1203,0,2611
chr1	6195209	rs58363298	G	A	1996.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=83;ExcessHet=3.9794;FS=5.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.037;SOR=1.132;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,34:83:99:929,0,1245
chr1	6195590	rs17029210	A	G	198.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.86;ReadPosRankSum=-2.189e+00;SOR=1.085;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:207,0,135
chr1	6204161	rs17436816	G	A	3221.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=225;ExcessHet=3.0103;FS=1.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.448;SOR=0.803;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,122:225:99:3230,0,2371
chr1	6204222	rs17489787	C	G	4847.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=208;ExcessHet=3.9794;FS=8.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=1.25;SOR=1.213;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,91:208:99:2184,0,3066
chr1	6204266	rs9435102	A	G	13969.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.150e-01;DB;DP=158;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.59;ReadPosRankSum=-1.808e+00;SOR=0.647;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,158:158:99:4823,474,0
chr1	6204381	rs186162158	G	A	248.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.56;ReadPosRankSum=1.22;SOR=0.551;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,8:29:99:257,0,749
chr1	6204411	rs57172726	G	A	407.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=-9.400e-02;SOR=1.493;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:416,0,190
chr1	6206421	rs145934535	C	T	1921.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515e+00;DB;DP=164;ExcessHet=3.0103;FS=1.259;MQ=60.00;MQRankSum=0.00;QD=11.71;ReadPosRankSum=0.429;SOR=0.554;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,82:164:99:1930,0,2128
chr1	6206648	rs41279488	C	A	275.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e+00;DB;DP=29;ExcessHet=3.0103;FS=1.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=-2.300e-01;SOR=0.330;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:284,0,633
chr1	6211340	rs9435113	T	C	1015.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=1.44;SOR=1.193;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:76:394,0,76
chr1	6212843	rs2311388	T	C	1153.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e-01;DB;DP=22;ExcessHet=3.9794;FS=1.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.37;SOR=0.960;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:312,0,332
chr1	6219287	rs56933510	TCACA	T,TCA	586.28	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.967;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.49;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,2:8:41:300,59,41,184,0,162
chr1	6219685	rs75863307	C	T	396.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.42;ReadPosRankSum=-1.156e+00;SOR=1.179;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,12:15:69:405,0,69
chr1	6239808	rs35368955	G	GC	71.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.16;SOR=0.693;VQSLOD=2.98;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	6239937	rs70981314	C	CG	10796.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=59.95;QD=29.69;SOR=1.981;VQSLOD=4.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,110:110:99:4196,345,0
chr1	6257826	rs2294714	T	C	2015.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DB;DP=34;ExcessHet=1.5490;FS=1.106;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=0.587;SOR=0.491;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:522,0,390
chr1	6257856	rs2294713	G	A	2758.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.830e-01;DB;DP=38;ExcessHet=3.9794;FS=2.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=0.041;SOR=0.491;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:677,0,414
chr1	6269340	rs4908865	A	G	1000.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=59;ExcessHet=3.0103;FS=6.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=1.34;SOR=0.177;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,35:59:99:1009,0,648
chr1	6272137	rs709208	A	G	13994.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=227;ExcessHet=3.9794;FS=0.575;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=0.802;SOR=0.657;VQSLOD=6.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,128:227:99:3288,0,2474
chr1	6278414	rs709209	A	G	8381.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=147;ExcessHet=3.9794;FS=2.635;MQ=60.00;MQRankSum=1.02;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.386;SOR=0.539;VQSLOD=2.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,74:147:99:1817,0,1785
chr1	6285458	rs3747974	T	C	63.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.524;SOR=0.446;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:72:72,0,104
chr1	6291810	rs4908541	A	G	110.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=-2.530e-01;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:119,0,64
chr1	6291918	.	T	TA	767.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DP=33;ExcessHet=3.9794;FS=3.829;MQ=60.00;MQRankSum=0.00;QD=10.65;ReadPosRankSum=0.583;SOR=1.386;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,15:33:99:279,0,298
chr1	6305292	rs61760836	C	A	1391.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370e+00;DB;DP=47;ExcessHet=3.9794;FS=2.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=0.415;SOR=1.078;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,33:47:99:959,0,350
chr1	6305303	rs61760837	C	A	1520.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=57;ExcessHet=3.9794;FS=1.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=1.08;SOR=1.022;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,36:57:99:1031,0,471
chr1	6309319	rs1883608	C	G	813.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=1.02;SOR=0.836;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:439,0,486
chr1	6310624	rs111970052	C	T	1024.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-01;DB;DP=81;ExcessHet=3.0103;FS=0.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.095;SOR=0.840;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1033,0,1026
chr1	6313938	rs12735670	C	T	7664.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.04;SOR=1.270;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3579,344,0
chr1	6314349	rs6696630	A	G	3220.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.233e+00;DB;DP=34;ExcessHet=3.0103;FS=3.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.58;ReadPosRankSum=-1.204e+00;SOR=1.371;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1278,102,0
chr1	6314479	rs12740426	C	T	1480.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=48;ExcessHet=3.9794;FS=9.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.302;SOR=0.141;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:772,0,703
chr1	6314748	rs61741782	C	T	2378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485e+00;DB;DP=179;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=1.05;SOR=0.698;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,93:179:99:2387,0,2302
chr1	6314822	rs11590458	T	C	8823.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=0.878;VQSLOD=19.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4448,422,0
chr1	6393445	rs2235693	A	G	912.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=46;ExcessHet=3.9794;FS=1.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.829;SOR=0.892;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,26:46:99:760,0,513
chr1	6399711	rs2235692	A	G	3955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=107;ExcessHet=3.9794;FS=1.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.756;SOR=0.808;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,60:107:99:1525,0,1105
chr1	6399797	rs2235691	C	T	1293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.22;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=59.37;MQRankSum=0.340;QD=19.59;ReadPosRankSum=0.087;SOR=1.222;VQSLOD=-5.555e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,9:27:99:262,0,533
chr1	6399799	.	GT	G	1394.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.56;MQRankSum=-4.620e-01;QD=23.25;ReadPosRankSum=2.10;SOR=0.841;VQSLOD=0.144;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,15:23:73:417,0,73
chr1	6399933	rs6681084	A	G	62.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,70
chr1	6420490	rs3827717	T	A	819.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.820e-01;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.774;SOR=0.936;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:391,0,299
chr1	6445378	rs6143103	C	CTGAGGGTGGCCACT	209.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.760e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.08;ReadPosRankSum=-5.670e-01;SOR=0.223;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,5:16:99:218,0,1514
chr1	6445887	rs149756563	AG	A	185.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=14;ExcessHet=3.0103;FS=3.256;MQ=60.00;MQRankSum=0.00;QD=13.23;ReadPosRankSum=0.312;SOR=2.303;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:194,0,269
chr1	6453520	rs76483502	C	CG	1521.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.23;SOR=2.833;VQSLOD=4.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:767,57,0
chr1	6473294	rs7529205	A	G	1891.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=77;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.133;SOR=0.691;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,34:77:99:822,0,990
chr1	6479040	rs2235687	G	A	290.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.710e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.36;ReadPosRankSum=0.736;SOR=0.743;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:299,0,133
chr1	6479938	rs12074131	A	G	261.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=0.980;SOR=0.693;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:87:270,0,87
chr1	6484878	rs182700746	C	T	79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=28.85;SOR=0.693;VQSLOD=17.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:6484878_C_T:90,6,0:6484878
chr1	6484880	rs188079860	A	G	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.59;SOR=0.693;VQSLOD=18.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:6484878_C_T:90,6,0:6484878
chr1	6484897	.	G	A	79	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=27.90;SOR=0.693;VQSLOD=18.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:6484878_C_T:90,6,0:6484878
chr1	6490016	rs12075883	G	A	1931.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632e+00;DB;DP=157;ExcessHet=3.0103;FS=4.718;MQ=59.49;MQRankSum=-6.040e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-5.100e-02;SOR=0.600;VQSLOD=-5.300e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,84:157:99:1940,0,1776
chr1	6500604	.	C	CG	122.95	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MQ=50.99;QD=32.67;SOR=2.303;VQSLOD=3.02;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:6500604_C_CG:45,3,0:6500604
chr1	6500610	rs200454180	AC	A	122.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=47.61;QD=27.99;SOR=2.833;VQSLOD=3.81;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:6500604_C_CG:45,3,0:6500604
chr1	6500626	.	C	CG	155.33	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MQ=50.99;QD=27.62;SOR=1.609;VQSLOD=4.31;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:6500604_C_CG:45,3,0:6500604
chr1	6500919	rs3817918	T	C	4082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=127;ExcessHet=3.9794;FS=4.993;MQ=59.77;MQRankSum=-2.169e+00;NEGATIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=2.18;SOR=0.467;VQSLOD=-1.476e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:59,68:127:99:1857,0,1403
chr1	6501044	rs2311045	C	G	6010.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DB;DP=295;ExcessHet=3.9794;FS=1.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=1.63;SOR=0.748;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:167,128:295:99:2946,0,3989
chr1	6504823	rs6664393	G	A	867.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.430e-01;DB;DP=78;ExcessHet=3.0103;FS=1.927;MQ=60.00;MQRankSum=0.00;QD=11.12;ReadPosRankSum=-1.500e-02;SOR=0.466;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,37:78:99:876,0,1009
chr1	6505671	rs11121879	G	A	1469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=117;ExcessHet=3.0103;FS=0.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.377;SOR=0.787;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,61:117:99:1478,0,1107
chr1	6525915	rs1536593	T	C	464.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-3.820e-01;SOR=0.580;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:473,0,347
chr1	6529182	rs375111412	TTCCTCC	T	2546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.89;DB;DP=126;ExcessHet=3.0103;FS=4.294;MQ=60.00;MQRankSum=0.00;QD=20.21;ReadPosRankSum=-1.450e-01;SOR=0.799;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:59,67:126:99:2555,0,3510
chr1	6530965	rs111312565	C	CG	7458.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=59.81;QD=33.90;SOR=0.956;VQSLOD=4.15;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3772,331,0
chr1	6531010	rs181693536	C	G	2063.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658e+00;DB;DP=123;ExcessHet=3.0103;FS=7.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=0.759;SOR=0.386;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,80:123:99:2072,0,1047
chr1	6545390	rs75490131	A	T	1248.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=60;ExcessHet=3.9794;FS=0.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.209;SOR=0.771;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,21:60:99:419,0,968
chr1	6557009	rs3007430	A	C	2407.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=78;ExcessHet=6.9897;FS=0.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=2.19;SOR=0.735;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,40:78:99:1065,0,1040
chr1	6579607	rs1556035	C	T	3946.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.148e+00;DB;DP=40;ExcessHet=3.0103;FS=6.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.60;ReadPosRankSum=1.72;SOR=0.201;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1272,120,0
chr1	6585804	rs13513	C	T	1789.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.522e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.42;ReadPosRankSum=0.374;SOR=1.721;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:515,39,0
chr1	6586070	rs7548042	C	T	9005.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.05;SOR=1.340;VQSLOD=5.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2751,275,0
chr1	6591937	rs932112	T	C	2186.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.96;ReadPosRankSum=-2.459e+00;SOR=1.022;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:525,42,0
chr1	6601773	rs3761927	T	C	447.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=4.977;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr1	6602223	rs5772238	AT	A	855.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.72;SOR=6.358;VQSLOD=5.28;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:6602223_AT_A:178,12,0:6602223
chr1	6602241	rs4434862	C	A	681.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.63;ReadPosRankSum=0.702;SOR=2.030;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:6602223_AT_A:178,12,0:6602223
chr1	6602273	rs4434863	C	G	299.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=1.04;SOR=1.802;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:6602273_C_G:85,6,0:6602273
chr1	6602282	rs4262565	A	G	432.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=4.804;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:6602273_C_G:45,3,0:6602273
chr1	6609559	rs11122091	C	A	1395.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.019e+00;DB;DP=11;ExcessHet=3.0103;FS=3.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=0.105;SOR=2.078;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:372,33,0
chr1	6609851	rs10864622	A	G	5601.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.54;SOR=1.946;VQSLOD=5.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1692,162,0
chr1	6609896	rs11579888	G	A	3107.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.85;MQRankSum=1.29;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=-7.000e-01;SOR=1.033;VQSLOD=0.856;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1152,90,0
chr1	6609958	rs11581831	C	T	1121.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.434e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=0.908;SOR=3.545;VQSLOD=17.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
chr1	6610366	rs2063805	T	C	2958.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.085;DB;DP=35;ExcessHet=3.0103;FS=1.357;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.18;ReadPosRankSum=-3.650e-01;SOR=0.446;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1259,105,0
chr1	6610382	rs2063806	C	T	3629.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.413e+00;DB;DP=46;ExcessHet=3.0103;FS=0.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.069;SOR=0.534;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1526,137,0
chr1	6610743	.	CT	C	161.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=5;ExcessHet=6.9897;FS=0.000;MQ=59.72;MQRankSum=0.00;QD=9.00;ReadPosRankSum=0.652;SOR=0.269;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:31:31,0,42
chr1	6614391	rs6693391	A	C	6488.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.34;SOR=1.798;VQSLOD=19.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,55:55:99:1|1:6614391_A_C:2520,175,0:6614391
chr1	6614415	rs6693400	A	G	7220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.37;SOR=1.259;VQSLOD=17.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,76:76:99:1|1:6614391_A_C:3025,229,0:6614391
chr1	6614535	rs4908923	G	A	7401.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.913;DB;DP=101;ExcessHet=3.0103;FS=6.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=1.02;SOR=1.038;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2942,303,0
chr1	6614653	rs4908924	C	G	2416.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.60;DB;DP=30;ExcessHet=3.0103;FS=1.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=0.829;SOR=0.456;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:923,90,0
chr1	6615690	rs925745	A	G	5401.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.300e-01;DB;DP=40;ExcessHet=3.0103;FS=1.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.82;ReadPosRankSum=1.63;SOR=0.458;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:6615690_A_G:1822,123,0:6615690
chr1	6615695	rs925744	C	T	5305.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.462e+00;DB;DP=40;ExcessHet=3.0103;FS=1.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=1.55;SOR=0.544;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:6615690_A_G:1798,120,0:6615690
chr1	6630622	rs12082471	G	C	67.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=2.303;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	6631319	rs11122096	G	A	3454.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=6.689;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1024,78,0
chr1	6631352	rs34514006	TC	T	1635.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.86;SOR=4.615;VQSLOD=4.75;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:436,42,0
chr1	6635231	rs10864628	A	G	19103.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.40;SOR=1.609;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,165:165:99:6158,495,0
chr1	6637313	rs4908931	A	G	1392.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=4.235;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:490,42,0
chr1	6645867	rs6682920	G	A	1126.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=20;ExcessHet=6.9897;FS=9.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.743;SOR=2.531;VQSLOD=17.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:352,0,228
chr1	6646959	rs374401991	GCCTGCCTTC	G	9018.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.520e-01;DB;DP=160;ExcessHet=6.9897;FS=1.738;MQ=60.00;MQRankSum=0.00;QD=19.78;ReadPosRankSum=-7.330e-01;SOR=0.584;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,82:160:99:3117,0,3641
chr1	6658770	rs11122102	G	A	191.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.37;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=0.411;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:17:159,0,17
chr1	6659505	rs2232460	G	A	8371.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=193;ExcessHet=6.9897;FS=0.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.842;SOR=0.645;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,102:193:99:2687,0,2278
chr1	6659578	rs2232459	G	A	689.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.890e-01;DB;DP=59;ExcessHet=3.0103;FS=8.758;MQ=59.86;MQRankSum=-1.216e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=1.26;SOR=2.342;VQSLOD=-7.798e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,23:59:99:698,0,1131
chr1	6661732	rs12028517	C	A	1101.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423e+00;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.00;SOR=0.345;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:379,0,504
chr1	6662913	rs6674407	G	A	2040.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DB;DP=52;ExcessHet=6.9897;FS=1.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.064e+00;SOR=0.574;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:723,0,587
chr1	6677064	rs10779795	A	G	1738.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=23;ExcessHet=3.9794;FS=1.522;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.624;SOR=0.481;VQSLOD=6.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:863,69,0
chr1	6681262	rs11122106	A	G	935.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.74;ReadPosRankSum=-1.108e+00;SOR=1.148;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:24:1|1:6681262_A_G:341,24,0:6681262
chr1	6681275	rs12034227	A	C	1230.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.126e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=1.23;SOR=1.101;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:6681262_A_G:521,39,0:6681262
chr1	6681744	rs3747994	C	T	2543.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=6.21;DB;DP=29;ExcessHet=3.9794;FS=7.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=0.400;SOR=2.557;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1180,87,0
chr1	6685442	rs12746591	A	G	755.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=1.87;SOR=0.824;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:533,48,0
chr1	6690140	rs742394	A	G	790.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.371e+00;DB;DP=11;ExcessHet=3.9794;FS=4.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=0.342;SOR=1.828;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:412,33,0
chr1	6692273	rs34491693	C	CA,CAA	488.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.179;DB;DP=10;ExcessHet=3.9794;FS=1.652;MQ=60.00;MQRankSum=0.00;QD=12.85;ReadPosRankSum=0.126;SOR=0.331;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,5:10:62:217,95,94,62,0,79
chr1	6693097	rs3174820	A	G	6387.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.118e+00;DB;DP=94;ExcessHet=3.9794;FS=5.280;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=-5.680e-01;SOR=0.399;VQSLOD=7.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3353,282,0
chr1	6694207	rs12727844	A	G	3219.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DB;DP=53;ExcessHet=3.9794;FS=3.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-3.100e-02;SOR=0.985;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1736,159,0
chr1	6694574	rs6804	G	A	4955.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=86;ExcessHet=3.9794;FS=1.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=1.50;SOR=0.564;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2654,257,0
chr1	6694980	rs1043683	G	A	409.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=0.00;SOR=0.387;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	6695331	rs11892	G	T	77.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	6695802	rs6577583	A	G	3847.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.440e-01;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.350;SOR=0.675;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1751,177,0
chr1	6704635	rs200458	A	G	8069.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=0.763;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3378,336,0
chr1	6705356	rs200457	A	G	176.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=6.9897;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-5.240e-01;SOR=0.141;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:59:59,0,68
chr1	6705874	rs200454	G	C	8283.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.711;DB;DP=228;ExcessHet=6.9897;FS=3.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.660;SOR=0.943;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:122,106:228:99:2648,0,3118
chr1	6711146	rs12145525	T	C	3868.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DB;DP=99;ExcessHet=6.9897;FS=1.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.549;SOR=0.674;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,55:99:99:1347,0,1063
chr1	6761702	rs3761925	C	T	6607.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.604e+00;DB;DP=164;ExcessHet=6.9897;FS=2.252;MQ=60.00;MQRankSum=0.00;QD=14.82;ReadPosRankSum=-6.130e-01;SOR=0.504;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,88:164:99:2499,0,2164
chr1	6866978	rs660880	G	A	1318.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.138;SOR=0.781;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,11:21:99:330,0,327
chr1	6931643	rs55944233	T	TA	520.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DB;DP=22;ExcessHet=3.9794;FS=1.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=-6.600e-02;SOR=0.988;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,12:22:99:277,0,220
chr1	6948204	rs8918	T	C	121.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.55;SOR=2.833;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr1	7151665	rs12070592	C	T	232.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=10;ExcessHet=3.9794;FS=3.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.616;SOR=0.132;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:111,0,159
chr1	7166332	rs72857584	G	A	408.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e-01;DB;DP=24;ExcessHet=3.9794;FS=3.750;MQ=60.00;MQRankSum=0.00;QD=12.02;ReadPosRankSum=1.68;SOR=1.802;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:24:99:322,0,281
chr1	7202190	rs970973	T	C	4951.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=102;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=0.700;SOR=0.706;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,51:102:99:1262,0,1199
chr1	7289606	rs6659573	T	G	37.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.56;SOR=1.609;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:7289606_T_G:45,3,0:7289606
chr1	7289612	rs6659575	T	G	76.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.87;SOR=1.609;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:6:1|1:7289606_T_G:86,6,0:7289606
chr1	7289619	rs6577423	G	A	226.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.62;SOR=3.912;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:7289606_T_G:237,18,0:7289606
chr1	7289777	rs4243824	G	A	3232.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.39;SOR=0.888;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1854,192,0
chr1	7289959	rs763197	A	G	624.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=4.174;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:354,27,0
chr1	7412088	rs4908624	C	T	314.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=0.230;SOR=2.494;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:51:323,0,51
chr1	7527996	rs1201529	T	C	5194.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857e+00;DB;DP=83;ExcessHet=3.0103;FS=0.700;MQ=60.00;MQRankSum=-1.270e+00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=-2.025e+00;SOR=0.585;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,31:83:99:730,0,1484
chr1	7568982	rs1193180	G	T	360.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335e+00;DB;DP=12;ExcessHet=3.9794;FS=6.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=-8.000e-02;SOR=0.074;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:82:270,0,82
chr1	7569014	rs190030328	G	A	117.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=11;ExcessHet=3.0103;FS=2.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-1.489e+00;SOR=0.223;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:126,0,160
chr1	7594759	rs1725228	A	G	670.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=9;ExcessHet=3.9794;FS=4.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=0.732;SOR=2.030;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:380,27,0
chr1	7595233	rs2478266	G	A	514.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.328;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr1	7624855	rs17031140	G	T	278.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166e+00;DB;DP=21;ExcessHet=3.9794;FS=2.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.431;SOR=1.432;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:147,0,476
chr1	7737799	rs3011926	A	G	7565.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.770e-01;DB;DP=171;ExcessHet=1.5490;FS=6.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.38;ReadPosRankSum=-8.180e-01;SOR=0.408;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5360,512,0
chr1	7796640	.	C	CA	972.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.69;ReadPosRankSum=-2.250e-01;SOR=0.686;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,32:71:99:981,0,1247
chr1	7797734	rs1417986	T	A	3671.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.600e-01;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=0.781;SOR=0.650;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,30:48:99:908,0,537
chr1	7805208	rs2071986	G	T	766.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=-4.750e-01;SOR=1.022;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:143,0,140
chr1	7807897	rs12133253	A	G	4935.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.17;ReadPosRankSum=-2.681e+00;SOR=0.647;VQSLOD=22.05;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:45,26:71:99:600,0,1136
chr1	7809728	rs60799863	C	CT	1104.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=25;ExcessHet=3.9794;FS=5.351;MQ=60.00;MQRankSum=0.00;QD=15.33;ReadPosRankSum=-4.250e-01;SOR=3.240;VQSLOD=3.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,9:25:99:162,0,349
chr1	7811014	rs1573753	G	A	3200.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.440e-01;DB;DP=45;ExcessHet=3.0103;FS=0.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=0.445;SOR=0.834;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,17:45:99:386,0,775
chr1	7811215	rs10779689	A	G	6004.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326e+00;DB;DP=68;ExcessHet=3.0103;FS=7.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=0.178;SOR=0.809;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,35:68:99:938,0,911
chr1	7812398	rs9919223	A	G	650.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=-1.579e+00;SOR=2.737;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:91:91,0,139
chr1	7815554	rs12408963	G	A	584.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=36;ExcessHet=3.0103;FS=1.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=1.70;SOR=1.270;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:593,0,436
chr1	7826313	rs5772289	A	AT	1683.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=34;ExcessHet=3.0103;FS=1.410;MQ=60.00;MQRankSum=0.00;QD=21.87;ReadPosRankSum=1.03;SOR=0.426;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:34:99:934,101,0
chr1	7826347	rs697672	C	T	3955.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.10;SOR=1.823;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1484,138,0
chr1	7833485	rs11576572	G	A	2667.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542e+00;DB;DP=66;ExcessHet=3.9794;FS=0.548;MQ=59.95;MQRankSum=1.21;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.519;SOR=0.781;VQSLOD=2.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,38:66:99:892,0,687
chr1	7845695	rs228729	T	C	1789.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=20;ExcessHet=3.0103;FS=6.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.34;ReadPosRankSum=0.044;SOR=2.252;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,5:20:99:163,0,476
chr1	7847000	rs11579477	A	G	462.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.450e-01;DB;DP=32;ExcessHet=3.0103;FS=3.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=1.60;SOR=0.269;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:471,0,367
chr1	7847362	rs35115980	C	CT	3611.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.14;SOR=3.219;VQSLOD=3.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1148,111,0
chr1	7847529	rs2859390	A	G	1176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-1.726e+00;SOR=0.712;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,50:95:99:1185,0,1021
chr1	7847614	rs697685	G	A	2737.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=1.16;SOR=0.848;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:599,0,693
chr1	7854330	rs11582231	G	A	220.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=0.854;SOR=1.863;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:59:229,0,59
chr1	7858925	rs228686	T	C	491.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.79;SOR=5.283;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
chr1	7861153	rs34433622	C	CT	1003.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=42;ExcessHet=3.9794;FS=7.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.596;SOR=1.432;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,16:42:99:411,0,768
chr1	7861304	rs707465	T	C	905.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731e+00;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=-2.050e-01;SOR=0.735;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:202,0,428
chr1	7861345	rs488728	G	A	488.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.76;ReadPosRankSum=-1.611e+00;SOR=1.402;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:97:179,0,97
chr1	7862899	rs228641	T	C	888.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=6.273;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	7863051	rs72632072	A	T	546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.885e+00;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.789;SOR=0.551;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:555,0,767
chr1	7863293	rs228642	C	T	1057.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.45;DB;DP=26;ExcessHet=3.9794;FS=3.343;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-7.000e-02;SOR=1.426;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:26:99:471,0,284
chr1	7869915	rs228668	G	C	9707.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=1.845;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2419,225,0
chr1	7870048	rs228669	T	C	10090.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.920e-01;DB;DP=119;ExcessHet=3.0103;FS=0.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.30;ReadPosRankSum=0.507;SOR=0.639;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3599,356,0
chr1	7870144	rs228670	A	C	8379.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.93;ReadPosRankSum=0.640;SOR=0.460;VQSLOD=6.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2366,222,0
chr1	7880469	rs228691	A	G	1346.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=-7.800e-02;SOR=1.075;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:68:427,0,68
chr1	7886424	rs697693	G	A	484.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=22;ExcessHet=3.9794;FS=1.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=2.02;SOR=1.051;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:392,0,282
chr1	7887248	rs2859387	G	A	8829.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=171;ExcessHet=3.9794;FS=3.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=-9.560e-01;SOR=0.985;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,84:171:99:2131,0,2198
chr1	7887493	rs228696	T	C	34947.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=337;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=0.871;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,337:337:99:10638,1011,0
chr1	7887926	rs11590657	A	G	1141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=86;ExcessHet=3.0103;FS=0.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.091;SOR=0.818;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,42:86:99:1150,0,1116
chr1	7889804	rs228701	C	G	9845.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.19;DB;DP=79;ExcessHet=3.0103;FS=3.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.97;ReadPosRankSum=-2.560e-01;SOR=1.091;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,42:79:99:1442,0,1012
chr1	7889941	rs2640908	C	T	3805.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=304;ExcessHet=3.0103;FS=1.924;MQ=59.63;MQRankSum=-2.500e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.80;SOR=0.576;VQSLOD=0.224;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:154,150:304:99:3814,0,3960
chr1	7890064	rs12023156	A	G	4960.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288e+00;DB;DP=347;ExcessHet=3.0103;FS=7.143;MQ=59.45;MQRankSum=3.88;NEGATIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=5.09;SOR=0.638;VQSLOD=-2.673e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:149,198:347:99:4968,0,4534
chr1	7890264	rs1773135	A	G	15174.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=142;ExcessHet=3.0103;FS=0.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.99;ReadPosRankSum=1.82;SOR=0.596;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,68:142:99:2007,0,2084
chr1	7902571	rs11581160	T	A	192.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.02;ReadPosRankSum=-1.367e+00;SOR=0.495;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:201,0,126
chr1	7904247	rs228677	C	T	116.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.55;SOR=2.833;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr1	7906255	rs228679	T	C	444.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.16;SOR=4.977;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	7906476	rs172932	G	T	12056.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=1.090;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4063,381,0
chr1	7907007	rs697694	G	A	1372.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=1.33;SOR=0.770;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:279,0,461
chr1	7907805	rs112820691	C	CT	1053.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460e-01;DB;DP=57;ExcessHet=3.0103;FS=1.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.275;SOR=0.932;VQSLOD=7.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,33:57:99:1062,0,728
chr1	7907971	rs707473	C	A	293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e-01;DB;DP=30;ExcessHet=3.0103;FS=1.527;MQ=60.00;MQRankSum=0.00;QD=9.78;ReadPosRankSum=0.318;SOR=1.034;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:302,0,502
chr1	7913184	rs34962249	C	CA	497.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e-01;DB;DP=31;ExcessHet=6.9897;FS=0.817;MQ=60.00;MQRankSum=0.00;QD=5.13;ReadPosRankSum=-1.273e+00;SOR=0.566;VQSLOD=5.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,8:31:67:67,0,454
chr1	7913430	rs228648	G	A	4234.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.70;DB;DP=87;ExcessHet=1.5490;FS=1.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=-3.700e-01;SOR=0.853;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2651,261,0
chr1	7998963	rs226476	T	G	8287.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.28;ReadPosRankSum=0.371;SOR=0.756;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,83:84:99:2637,242,0
chr1	8022800	rs370370394	CT	C	379.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=58.98;MQRankSum=-1.058e+00;QD=7.30;ReadPosRankSum=-3.920e-01;SOR=0.823;VQSLOD=0.382;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,2:21:14:14,0,229
chr1	8037496	rs161807	G	A	3116.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819e+00;DB;DP=142;ExcessHet=3.9794;FS=0.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=1.92;SOR=0.667;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,63:142:99:1347,0,1973
chr1	8064578	rs72634228	A	G	1291.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-3.950e-01;SOR=0.616;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:520,0,523
chr1	8384268	rs6702047	T	C	7893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.17;SOR=2.440;VQSLOD=19.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1877,162,0
chr1	8390008	rs1473497	A	G	501.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.17;SOR=5.136;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr1	8390051	rs1473496	G	A	448.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242e+00;DB;DP=9;ExcessHet=1.5490;FS=2.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-1.321e+00;SOR=0.223;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:313,27,0
chr1	8390495	rs1058619	A	G	11907.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=202;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.97;ReadPosRankSum=-8.400e-01;SOR=0.949;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,202:202:99:5748,598,0
chr1	8395441	rs2305016	T	C	12525.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=223;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=1.653;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,223:223:99:7037,669,0
chr1	8397639	rs3861749	T	C	935.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.49;QD=29.35;SOR=4.892;VQSLOD=2.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr1	8404093	rs1055236	C	T	1588.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.060e-01;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=-7.820e-01;SOR=1.179;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1605,114,0
chr1	8404169	rs6685844	T	A	2165.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=6.518;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:588,42,0
chr1	8526142	rs4908760	G	A	5659.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=1.385;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2787,269,0
chr1	8557320	rs7518608	C	G	559.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.74;SOR=3.912;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:181,15,0
chr1	8557691	rs7530745	A	C	2085.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.77;SOR=2.722;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1009,93,0
chr1	8716543	rs3737670	G	C	619.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=59.27;POSITIVE_TRAIN_SITE;QD=26.46;SOR=5.549;VQSLOD=4.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:344,24,0
chr1	8924282	rs1543711	A	G	902.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=6.273;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr1	8925112	rs2765507	T	C	193.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:75,0,33
chr1	8926285	rs3831913	A	AG	1193.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=32;ExcessHet=6.9897;FS=2.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.133;SOR=1.911;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,15:32:99:435,0,484
chr1	8926752	rs2781065	T	C	3154.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.35;SOR=7.223;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:964,66,0
chr1	8926868	rs2781064	C	T	299.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=-3.080e-01;SOR=0.787;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:27:27,0,141
chr1	8928125	rs2071412	G	T	2772.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608e+00;DB;DP=99;ExcessHet=6.9897;FS=3.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=-2.870e-01;SOR=0.829;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,49:99:99:1098,0,1211
chr1	8930369	rs2781060	T	C	3642.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=2.459;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1239,111,0
chr1	8930385	rs2765511	G	A	4497.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=1.921;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1616,150,0
chr1	8935149	rs2038904	A	G	2170.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.61;SOR=3.538;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:779,63,0
chr1	9017091	rs2274332	C	T	429.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=35;ExcessHet=3.0103;FS=5.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-1.880e-01;SOR=2.179;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,13:35:99:438,0,674
chr1	9017239	rs199675048	C	T	2173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.620;DB;DP=189;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.50;ReadPosRankSum=1.83;SOR=0.692;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,92:189:99:2182,0,2370
chr1	9019221	rs41278984	T	C	270.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=-6.480e-01;SOR=1.609;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:97:279,0,97
chr1	9027899	rs2274334	G	T	951.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=97;ExcessHet=3.0103;FS=3.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-1.108e+00;SOR=1.099;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,35:97:99:960,0,1633
chr1	9028022	.	C	CT	117	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085e+00;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.59;MQRankSum=-2.820e-01;QD=7.80;ReadPosRankSum=0.319;SOR=1.022;VQSLOD=0.391;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,1:4:26:26,0,26
chr1	9064609	rs111448504	AG	A	1280.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.255e+00;DB;DP=23;ExcessHet=1.5490;FS=3.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=0.046;SOR=0.235;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:791,69,0
chr1	9067142	rs6672506	G	A	1182.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.223e+00;DB;DP=18;ExcessHet=1.5490;FS=6.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=-5.340e-01;SOR=3.943;VQSLOD=13.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:732,54,0
chr1	9070485	rs2012842	T	A	61.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:69,0,63
chr1	9073801	rs7537425	C	T	1767.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-9.400e-02;SOR=0.759;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,30:62:99:873,0,860
chr1	9074932	rs1556757	G	A	1480.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DB;DP=49;ExcessHet=3.9794;FS=0.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=1.32;SOR=0.552;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,24:49:99:808,0,755
chr1	9079154	rs12031065	C	T	982.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=33;ExcessHet=3.9794;FS=4.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=1.62;SOR=1.911;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:604,0,422
chr1	9083388	rs809966	C	T	785.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=6.091;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
chr1	9084924	rs2027222	T	C	10048.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.24;DB;DP=132;ExcessHet=3.0103;FS=7.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.31;ReadPosRankSum=1.71;SOR=1.197;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4287,395,0
chr1	9098230	rs875996	C	T	504.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=13;ExcessHet=3.9794;FS=11.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.413;SOR=0.515;VQSLOD=18.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:192,0,229
chr1	9098361	rs111429581	G	C	484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.447e+00;DB;DP=34;ExcessHet=3.0103;FS=9.834;MQ=60.00;MQRankSum=0.00;QD=14.24;ReadPosRankSum=-9.200e-01;SOR=0.069;VQSLOD=17.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:493,0,467
chr1	9117351	.	TA	T	59.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.26;MQRankSum=0.00;QD=19.87;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:52:67,0,52
chr1	9117371	rs11121310	A	G	101.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.79;MQRankSum=0.00;QD=9.20;ReadPosRankSum=0.674;SOR=1.112;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,86
chr1	9118596	rs12145292	C	A	248.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.257;SOR=0.307;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:98:98,0,196
chr1	9129867	rs3820034	G	A	372.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=0.992;SOR=0.914;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:144,0,179
chr1	9129945	rs770041	A	G	103.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:109,0,27
chr1	9165685	rs72637739	G	A	9934.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182e+00;DB;DP=260;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.700;SOR=0.695;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,122:260:99:2852,0,3228
chr1	9165868	rs1705303	A	G	2797.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=6.244;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:864,63,0
chr1	9171238	rs12135666	G	T	5228.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=159;ExcessHet=6.9897;FS=1.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.476;SOR=0.802;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,59:159:99:1747,0,2638
chr1	9304978	rs139855605	CCCCAGGCA	C	3353.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.688;DB;DP=42;ExcessHet=1.5490;FS=1.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=-3.350e-01;SOR=0.949;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1839,127,0
chr1	9306849	rs2310925	T	C	2871.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.437;DB;DP=43;ExcessHet=1.5490;FS=3.553;MQ=59.96;MQRankSum=1.18;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=-3.580e-01;SOR=0.289;VQSLOD=1.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1625,129,0
chr1	9307308	rs56110957	T	TG	1333.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.74;SOR=7.223;VQSLOD=5.64;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:337,27,0
chr1	9324571	rs9434742	T	C	19810.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.840e+00;DB;DP=430;ExcessHet=1.5490;FS=1.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.740;SOR=0.849;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,429:430:99:13169,1249,0
chr1	9324670	rs9434743	A	G	11749.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.26;DB;DP=239;ExcessHet=1.5490;FS=4.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=0.795;SOR=0.469;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,239:239:99:7808,717,0
chr1	9325001	rs41280760	C	T	229.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=2.01;SOR=0.693;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:238,0,207
chr1	9416346	rs3795309	C	T	10135.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.270e-01;DB;DP=193;ExcessHet=1.5490;FS=0.633;MQ=59.98;MQRankSum=-9.540e-01;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=-1.661e+00;SOR=0.788;VQSLOD=1.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:93,100:193:99:2562,0,2544
chr1	9416852	rs12760778	A	G	885.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.240e-01;DB;DP=36;ExcessHet=3.9794;FS=5.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-1.660e-01;SOR=0.209;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:481,0,552
chr1	9416962	rs4908852	G	A	645.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=0.00;SOR=4.407;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:142,0,28
chr1	9658465	rs9430181	T	G	12805.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=2.276;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4669,413,0
chr1	9658707	rs9430182	G	A	8004.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.050;DB;DP=94;ExcessHet=3.0103;FS=1.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=-3.910e-01;SOR=0.580;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3244,282,0
chr1	9658809	rs9430183	A	G	1771.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=7.658;VQSLOD=23.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:430,33,0
chr1	9661061	rs9430184	A	G	6073.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.72;SOR=3.774;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1977,162,0
chr1	9670483	rs4244632	T	A	12092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=1.848;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3729,347,0
chr1	9670834	rs4926472	C	T	8781.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.63;DB;DP=127;ExcessHet=3.0103;FS=1.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=1.86;SOR=0.569;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,125:127:99:4030,331,0
chr1	9671257	.	CT	C	1149.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.248e+00;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.54;ReadPosRankSum=-7.310e-01;SOR=0.538;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:18:53:431,53,0
chr1	9672091	rs4073293	G	A	1435.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.253e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=-1.790e-01;SOR=4.073;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:598,45,0
chr1	9714177	rs7511971	G	A	8131.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.090e-01;DB;DP=177;ExcessHet=1.5490;FS=0.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=-1.034e+00;SOR=0.795;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,94:177:99:2559,0,2183
chr1	9714538	rs150187930	G	GGA	4720.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=81;ExcessHet=1.5490;FS=3.956;MQ=60.00;MQRankSum=0.00;QD=30.26;ReadPosRankSum=-1.522e+00;SOR=1.117;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,32:81:99:0|1:9714538_G_GGA:1184,0,8736:9714538
chr1	9714539	rs56017286	T	G	4722.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=80;ExcessHet=1.5490;FS=3.987;MQ=60.00;MQRankSum=0.00;QD=30.08;ReadPosRankSum=-1.230e+00;SOR=1.132;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,31:80:99:0|1:9714538_G_GGA:1185,0,8736:9714538
chr1	9714541	rs56235370	C	CCA	4644.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.85;DB;DP=80;ExcessHet=1.5490;FS=4.072;MQ=60.00;MQRankSum=0.00;QD=30.16;ReadPosRankSum=-1.176e+00;SOR=1.168;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,31:80:99:0|1:9714538_G_GGA:1151,0,8780:9714538
chr1	9714543	rs55851927	A	ACCCC	4506.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514e+00;DB;DP=73;ExcessHet=1.5490;FS=3.008;MQ=60.00;MQRankSum=0.00;QD=31.74;ReadPosRankSum=-1.050e+00;SOR=1.061;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,28:73:99:0|1:9714538_G_GGA:1193,0,8777:9714538
chr1	9714544	rs55746245	A	AG	4290.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.40;DB;DP=70;ExcessHet=1.5490;FS=6.733;MQ=60.00;MQRankSum=0.00;QD=31.55;ReadPosRankSum=-7.050e-01;SOR=1.576;VQSLOD=4.69;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,26:70:99:0|1:9714538_G_GGA:1112,0,8727:9714538
chr1	9770690	.	CAG	C	308.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e+00;DP=39;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.12;ReadPosRankSum=0.114;SOR=0.439;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,5:39:60:60,0,1075
chr1	9777451	rs34287026	G	GGA	1375.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.580e-01;DB;DP=11;ExcessHet=3.0103;FS=2.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.27;ReadPosRankSum=-1.770e+00;SOR=0.854;VQSLOD=6.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:39:574,39,0
chr1	9781412	rs12735071	C	G	10616.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.606e+00;DB;DP=137;ExcessHet=3.0103;FS=2.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.896;SOR=0.890;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4397,411,0
chr1	9782556	rs11589267	C	T	5559.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=89;ExcessHet=3.0103;FS=0.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-8.560e-01;SOR=0.757;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2735,266,0
chr1	9792105	rs377673198	G	GA	2633.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.02;SOR=5.806;VQSLOD=4.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:69:639,69,0
chr1	9816620	rs6680090	T	C	5215.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.40;SOR=1.453;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1244,108,0
chr1	9883878	rs6686034	T	C	1050.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.89;SOR=2.753;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:356,30,0
chr1	9992159	.	TGGGGG	T	433.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DP=8;ExcessHet=4.7712;FS=0.000;MQ=59.30;MQRankSum=1.53;QD=32.83;ReadPosRankSum=1.53;SOR=0.693;VQSLOD=0.188;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:8:46:216,0,46
chr1	9992743	.	GAA	G	41.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.34;ReadPosRankSum=1.38;SOR=0.446;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:49:49,0,56
chr1	9994791	.	G	A	842.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-02;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.81;ReadPosRankSum=-8.520e-01;SOR=0.701;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:851,0,738
chr1	9996707	rs12065908	C	T	2862.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414e+00;DB;DP=91;ExcessHet=3.9794;FS=0.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=1.83;SOR=0.734;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,42:91:99:982,0,1340
chr1	10001235	rs137978085	TTTCG	T	2942.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390e-01;DB;DP=76;ExcessHet=3.9794;FS=3.844;MQ=60.00;MQRankSum=0.00;QD=18.27;ReadPosRankSum=0.642;SOR=0.450;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1464,0,1884
chr1	10001401	rs60132751	C	T	165.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=9;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.366;SOR=2.303;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:173,0,127
chr1	10027540	rs2890358	G	A	765.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.982e+00;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-5.680e-01;SOR=0.787;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:278,0,405
chr1	10027646	rs2380188	A	G	477.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.85;ReadPosRankSum=-4.800e-01;SOR=2.584;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	10036009	rs12082318	G	A	680.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.14;SOR=0.551;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:269,0,174
chr1	10057203	rs3811458	G	T	602.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.555e+00;DB;DP=14;ExcessHet=3.9794;FS=3.672;MQ=59.21;MQRankSum=0.464;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.00;SOR=0.242;VQSLOD=-1.342e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:137,0,349
chr1	10068477	rs11121514	A	G	598.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.53;ReadPosRankSum=1.65;SOR=0.941;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:76,0,62
chr1	10132493	rs34652791	C	CT	630.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818e+00;DB;DP=54;ExcessHet=3.0103;FS=1.021;MQ=60.00;MQRankSum=0.00;QD=11.67;ReadPosRankSum=-8.190e-01;SOR=0.551;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,30:54:99:639,0,487
chr1	10179562	rs145426187	C	T	1429.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=156;ExcessHet=3.0103;FS=0.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=0.506;SOR=0.621;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,63:156:99:1438,0,2395
chr1	10190575	rs61760196	G	C	1056.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=64;ExcessHet=3.0103;FS=2.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=-5.330e-01;SOR=1.105;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,38:64:99:1065,0,673
chr1	10190884	rs2295294	A	T	4771.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.932e+00;DB;DP=46;ExcessHet=3.0103;FS=0.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=1.13;SOR=0.831;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1378,138,0
chr1	10204791	rs138304003	T	TA	290.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.64;ReadPosRankSum=-2.820e-01;SOR=1.179;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:9:79,0,9
chr1	10218377	rs2273298	A	G	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.420e-01;DB;DP=35;ExcessHet=3.0103;FS=3.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=1.72;SOR=0.255;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:534,0,406
chr1	10218439	rs2273299	T	C	1437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DB;DP=91;ExcessHet=3.0103;FS=0.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=-1.330e+00;SOR=0.818;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,54:91:99:1446,0,931
chr1	10227894	rs6692491	A	G	63.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=2.303;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	10239647	rs41310363	A	G	1807.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=1.58;SOR=0.662;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,69:126:99:1816,0,1385
chr1	10240094	rs1046277	C	T	277.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-4.580e-01;SOR=0.446;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:286,0,265
chr1	10316627	rs17034616	C	G	181.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=-7.320e-01;SOR=1.179;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:190,0,107
chr1	10318652	rs12402052	C	G	2177.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=64;ExcessHet=6.9897;FS=0.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-5.950e-01;SOR=0.644;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,25:64:99:498,0,899
chr1	10322054	rs4846209	G	A	6978.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.07;DB;DP=134;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=0.695;SOR=0.670;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4105,400,0
chr1	10322153	rs4846210	A	G	4164.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DB;DP=112;ExcessHet=6.9897;FS=4.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-2.760e-01;SOR=0.914;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,55:112:99:1478,0,1426
chr1	10327407	rs12141246	A	T	3020.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=-1.880e-01;SOR=0.696;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1768,150,0
chr1	10327867	rs12141416	A	G	338.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=6;ExcessHet=3.9794;FS=5.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.366;SOR=2.387;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr1	10328338	rs1339458	C	T	1783.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=47;ExcessHet=6.9897;FS=7.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.941;SOR=1.289;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,17:47:99:320,0,916
chr1	10331450	rs41258245	T	G	341.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-1.416e+00;SOR=0.368;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:350,0,364
chr1	10332102	rs17034643	C	T	535.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.640e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.30;ReadPosRankSum=0.577;SOR=1.708;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	10334924	rs17396973	C	T	2182.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.12;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.209;SOR=0.692;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1081,105,0
chr1	10335315	rs6685773	G	A	3982.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=2.187;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:874,80,0
chr1	10339129	rs72865963	G	A	2285.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;DB;DP=201;ExcessHet=3.0103;FS=5.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-1.703e+00;SOR=0.577;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,98:201:99:2294,0,2446
chr1	10339209	rs35347635	CAT	C	9693.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=146;ExcessHet=6.9897;FS=3.367;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=-6.450e-01;SOR=0.929;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:84,62:146:99:2340,0,3303
chr1	10342352	rs3748575	C	T	1592.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.821;DB;DP=25;ExcessHet=3.9794;FS=2.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=0.936;SOR=1.047;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:813,75,0
chr1	10342522	rs17034660	G	A	900.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=53;ExcessHet=3.0103;FS=2.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.526;SOR=0.402;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,35:53:99:909,0,347
chr1	10342629	rs3748576	G	A	1972.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=2.041;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:604,54,0
chr1	10350849	rs12125535	T	A	74.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.83;SOR=0.693;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	10355834	rs3753037	C	T	2425.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027e+00;DB;DP=58;ExcessHet=6.9897;FS=1.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-4.580e-01;SOR=0.555;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,24:58:99:586,0,978
chr1	10356028	rs34437412	T	TG	1208.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=18;ExcessHet=3.9794;FS=2.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.39;ReadPosRankSum=0.163;SOR=1.088;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:726,54,0
chr1	10356562	rs2275424	C	A	612.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.00;SOR=0.811;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:124,0,344
chr1	10356848	rs912961	A	G	1812.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=29;ExcessHet=3.9794;FS=14.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=1.91;SOR=1.003;VQSLOD=13.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1061,87,0
chr1	10357206	rs199617049	AT	A,ATTT	675.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.450e-01;DB;DP=29;ExcessHet=3.9794;FS=2.777;MQ=59.88;MQRankSum=0.00;QD=7.76;ReadPosRankSum=-8.450e-01;SOR=0.452;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,12,9:29:99:383,175,334,170,0,494
chr1	10357406	rs3748577	A	G	365.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=-5.240e-01;SOR=1.061;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr1	10363050	rs3833523	C	CCA	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.02;ReadPosRankSum=-1.750e-01;SOR=0.551;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:183,0,228
chr1	10384176	rs200163420	C	CTTGAAA	3388.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DB;DP=49;ExcessHet=6.9897;FS=0.597;MQ=60.00;MQRankSum=0.00;QD=20.05;ReadPosRankSum=-7.400e-02;SOR=0.612;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,25:49:99:977,0,1757
chr1	10384439	rs17401924	A	G	67.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.82;SOR=2.303;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	10384711	rs201407650	C	CT	310.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DB;DP=30;ExcessHet=3.0103;FS=1.564;MQ=60.00;MQRankSum=0.00;QD=10.34;ReadPosRankSum=0.964;SOR=1.085;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,17:30:99:319,0,260
chr1	10386550	rs3819096	A	G	377.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=-9.800e-01;SOR=0.793;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:386,0,116
chr1	10394536	rs2276100	C	G	7456.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.67;DB;DP=139;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=1.54;SOR=0.666;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4415,415,0
chr1	10397567	rs2297881	A	G	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.540e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=-7.120e-01;SOR=0.551;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:341,0,576
chr1	10399811	rs3215996	TA	T	206.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=28;ExcessHet=3.0103;FS=1.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=1.07;SOR=0.275;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,8:28:99:215,0,680
chr1	10402009	rs33942183	CA	C	248.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.190e-01;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.43;MQRankSum=0.00;QD=9.57;ReadPosRankSum=0.00;SOR=1.051;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:20:129,0,20
chr1	10403482	rs1556916	G	A	1618.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=18;ExcessHet=3.9794;FS=2.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=-1.236e+00;SOR=1.721;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:697,54,0
chr1	10420918	rs3748578	G	A	6704.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.420e-01;DB;DP=152;ExcessHet=6.9897;FS=0.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.057;SOR=0.639;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,79:152:99:1908,0,1798
chr1	10420937	rs3748579	C	T	10568.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.25;DB;DP=171;ExcessHet=3.9794;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=2.07;SOR=0.763;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5204,513,0
chr1	10423319	rs72867421	T	C	943.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.627e+00;DB;DP=71;ExcessHet=3.0103;FS=2.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-4.100e-02;SOR=0.458;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,40:71:99:952,0,775
chr1	10425117	rs34161257	AT	A	1266.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.09;DB;DP=17;ExcessHet=3.9794;FS=1.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=2.84;SOR=0.990;VQSLOD=6.33;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:519,51,0
chr1	10428452	rs12130563	G	A	2054.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.94;DB;DP=24;ExcessHet=3.9794;FS=2.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=-9.400e-01;SOR=1.347;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:867,72,0
chr1	10431158	rs17411502	T	C	2564.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=60;ExcessHet=6.9897;FS=4.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-3.850e-01;SOR=1.074;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,32:60:99:832,0,645
chr1	10431329	rs72867431	C	T	1006.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766e+00;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-8.650e-01;SOR=0.752;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,40:81:99:1015,0,1143
chr1	10435170	rs11121551	T	C	2547.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=27;ExcessHet=3.9794;FS=13.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=1.18;SOR=1.880;VQSLOD=13.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1113,81,0
chr1	10435324	rs11121552	C	A	2299.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.360e-01;DB;DP=53;ExcessHet=6.9897;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.00;SOR=0.620;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,18:53:99:394,0,894
chr1	10438687	rs1536262	C	T	388.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=-2.040e-01;SOR=1.371;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	10459473	rs3737154	G	A	613.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-3.780e-01;SOR=1.112;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:622,0,700
chr1	10459779	rs3737155	G	A	5393.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=86;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=1.28;SOR=0.680;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2575,254,0
chr1	10460485	rs1049887	T	C	1660.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e+00;DB;DP=28;ExcessHet=6.9897;FS=4.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.329;SOR=0.329;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:590,0,248
chr1	10460716	rs35314429	A	AT	1334.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.762;DB;DP=31;ExcessHet=3.9794;FS=1.476;MQ=60.00;MQRankSum=0.00;QD=15.71;ReadPosRankSum=1.14;SOR=0.370;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:92:842,92,0
chr1	10464579	rs57895243	CT	C	41.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.13;ReadPosRankSum=-1.050e-01;SOR=0.223;VQSLOD=5.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:50:50,0,155
chr1	10468005	.	CA	C	809.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890e-01;DP=66;ExcessHet=6.9897;FS=6.403;MQ=59.98;MQRankSum=0.00;QD=4.09;ReadPosRankSum=0.773;SOR=0.384;VQSLOD=4.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,12:66:99:133,0,1087
chr1	10471789	rs2236678	A	T	2963.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.964e+00;DB;DP=39;ExcessHet=3.9794;FS=4.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.974;SOR=2.833;VQSLOD=19.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1558,117,0
chr1	10473196	rs2229687	C	T	6333.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=96;ExcessHet=3.9794;FS=0.983;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.178;SOR=0.784;VQSLOD=6.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3708,288,0
chr1	10473200	rs41289075	G	A	1314.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=-9.220e-01;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=1.40;SOR=0.643;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,53:100:99:1323,0,1163
chr1	10478727	rs3762286	G	A	631.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=9;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.00;SOR=2.400;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:336,27,0
chr1	10478830	.	C	CA	297.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DP=22;ExcessHet=6.9897;FS=4.738;MQ=59.87;MQRankSum=0.00;QD=5.62;ReadPosRankSum=0.902;SOR=1.501;VQSLOD=4.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,7:22:77:77,0,233
chr1	10479231	rs36039303	A	AT	168.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=6;ExcessHet=6.9897;FS=4.374;MQ=60.00;MQRankSum=0.00;QD=7.67;ReadPosRankSum=-4.140e-01;SOR=1.916;VQSLOD=4.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:17:75,0,17
chr1	10479353	rs111695814	C	T	940.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347e+00;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-5.670e-01;SOR=0.538;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,33:56:99:949,0,687
chr1	10479635	rs2298570	C	G	15786.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.109;DB;DP=288;ExcessHet=3.9794;FS=1.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=0.478;SOR=0.614;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,288:288:99:9115,867,0
chr1	10479678	rs1889309	G	A	9590.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-02;DB;DP=278;ExcessHet=6.9897;FS=1.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.158;SOR=0.606;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,136:278:99:3112,0,3438
chr1	10479791	rs41274480	G	A	1515.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=109;ExcessHet=3.0103;FS=5.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.39;SOR=1.212;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,58:109:99:1524,0,1284
chr1	10490285	rs649639	T	C	985.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.81;ReadPosRankSum=0.00;SOR=1.308;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:393,30,0
chr1	10490539	rs661256	G	C	1295.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-8.260e-01;SOR=0.681;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:725,0,529
chr1	10490550	rs661272	G	C	1310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.30;DB;DP=51;ExcessHet=3.9794;FS=0.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-5.800e-01;SOR=0.527;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:739,0,584
chr1	10490759	rs143754643	TTGGCTTAAC	T	2371.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.949;DB;DP=19;ExcessHet=3.0103;FS=1.898;MQ=60.00;MQRankSum=0.00;QD=23.24;ReadPosRankSum=0.00;SOR=1.413;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:855,57,0
chr1	10490789	rs6662684	G	C	930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.387e+00;DB;DP=17;ExcessHet=6.9897;FS=2.043;MQ=60.00;MQRankSum=0.00;QD=18.25;ReadPosRankSum=0.793;SOR=0.320;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:305,0,241
chr1	10490881	rs481571	G	A	203.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=2.584;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr1	10491209	rs484416	G	A	58.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.83;SOR=0.307;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,155
chr1	10502307	rs33919161	AT	A	822.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.53;ReadPosRankSum=1.18;SOR=1.022;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:205,0,204
chr1	10511360	rs8192489	A	G	180.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530e-01;DB;DP=16;ExcessHet=3.0103;FS=3.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.25;SOR=2.303;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:189,0,234
chr1	10511589	rs666103	T	C	1737.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.880e-01;DB;DP=24;ExcessHet=3.9794;FS=4.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=1.32;SOR=1.240;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:205,0,450
chr1	10596341	rs12375	C	T	4129.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.315;DB;DP=79;ExcessHet=3.9794;FS=1.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=0.412;SOR=0.882;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,31:79:99:879,0,1348
chr1	10596388	rs2480779	A	G	4245.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=3.066;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1507,126,0
chr1	10596530	rs2480778	A	G	521.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.80;SOR=5.283;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:416,30,0
chr1	10658936	rs58484171	C	CT	350.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.126;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.33;ReadPosRankSum=1.04;SOR=4.047;VQSLOD=2.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:141,15,0
chr1	10678655	rs284236	T	C	3099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.49;SOR=7.452;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1015,81,0
chr1	10703203	rs146039805	G	GC	1074.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;DB;DP=51;ExcessHet=3.0103;FS=8.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=-1.950e-01;SOR=1.885;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,32:51:99:1083,0,597
chr1	10705035	rs373248558	C	T	1440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=135;ExcessHet=3.0103;FS=0.644;MQ=60.00;MQRankSum=0.00;QD=10.67;ReadPosRankSum=-9.800e-02;SOR=0.813;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,59:135:99:1449,0,1880
chr1	10706091	rs284242	G	C	1210.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.840e-01;DB;DP=32;ExcessHet=3.9794;FS=2.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.253;SOR=1.981;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,20:32:99:665,0,339
chr1	10708142	rs778228	A	G	2033.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=54;ExcessHet=3.9794;FS=3.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=-4.200e-01;SOR=0.854;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:861,0,683
chr1	10709267	rs12143134	C	T	1650.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e-01;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.442;SOR=0.723;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,72:161:99:1659,0,2186
chr1	10709309	rs284300	C	G	4552.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=163;ExcessHet=3.9794;FS=0.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.262;SOR=0.627;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,84:163:99:2190,0,1882
chr1	10709441	rs284299	C	T	3209.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=142;ExcessHet=3.9794;FS=5.356;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.403;SOR=1.013;VQSLOD=7.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,69:142:99:1592,0,1661
chr1	10710849	rs3215814	G	GC	1844.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=84;ExcessHet=3.9794;FS=2.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-2.900e-01;SOR=0.518;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,39:84:99:1148,0,1329
chr1	10713765	rs284294	T	C	3866.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146e+00;DB;DP=156;ExcessHet=3.9794;FS=0.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-1.125e+00;SOR=0.675;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,84:156:99:2028,0,1910
chr1	10714330	rs35746667	A	AC	3450.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DB;DP=116;ExcessHet=3.9794;FS=3.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-2.080e-01;SOR=0.508;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:66,50:116:99:1493,0,2097
chr1	10716440	rs61776295	C	T	49.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.22;ReadPosRankSum=1.24;SOR=0.693;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,215
chr1	10718320	rs79177945	G	A	80.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.03;ReadPosRankSum=-9.840e-01;SOR=0.223;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,226
chr1	10718731	rs150195305	CCTCTG	C	706.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=44;ExcessHet=3.0103;FS=1.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=2.21;SOR=1.371;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,19:44:99:715,0,1522
chr1	10719645	rs475980	A	G	642.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.807;SOR=0.760;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,11:22:99:0|1:10719645_A_G:378,0,289:10719645
chr1	10720305	rs138985539	A	G	1595.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=126;ExcessHet=3.0103;FS=0.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-1.021e+00;SOR=0.779;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,60:126:99:1604,0,1729
chr1	10725498	rs284322	G	A	4203.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=321;ExcessHet=3.0103;FS=0.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.924;SOR=0.750;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,173:321:99:4212,0,3332
chr1	10725615	.	C	G	1130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.616e+00;DP=77;ExcessHet=3.0103;FS=3.760;MQ=60.00;MQRankSum=0.00;QD=14.68;ReadPosRankSum=0.020;SOR=0.311;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:1139,0,1254
chr1	11008497	rs1281017	G	C	9263.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e+00;DB;DP=224;ExcessHet=6.9897;FS=3.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.985;SOR=0.510;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,113:224:99:3102,0,3156
chr1	11008695	rs17036032	T	C	2122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798e+00;DB;DP=70;ExcessHet=3.9794;FS=1.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-2.490e-01;SOR=0.853;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,30:70:99:881,0,1257
chr1	11014118	rs45537241	C	T	1377.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.334e+00;DB;DP=117;ExcessHet=3.0103;FS=2.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-1.126e+00;SOR=0.479;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,60:117:99:1386,0,1563
chr1	11015165	rs75130475	A	G	596.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.960e-01;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=2.13;SOR=0.566;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:605,0,571
chr1	11015325	rs41274492	C	T	378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-3.560e-01;SOR=0.671;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:387,0,333
chr1	11016755	rs6701587	T	C	145.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=6.9897;FS=6.892;MQ=59.16;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=0.00;SOR=0.042;VQSLOD=-1.428e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:64:81,0,64
chr1	11016772	rs6699026	A	G	184.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=6.9897;FS=6.803;MQ=59.28;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.00;SOR=0.045;VQSLOD=-1.443e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:61:81,0,61
chr1	11016813	rs112309803	C	T	134.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=58.74;MQRankSum=-4.890e-01;NEGATIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-1.350e-01;SOR=0.105;VQSLOD=-1.220e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:99:143,0,102
chr1	11017022	rs149410406	C	CAG	1738.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DB;DP=111;ExcessHet=3.0103;FS=0.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.931;SOR=0.829;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,47:111:99:1747,0,2492
chr1	11017609	rs7511959	T	C	916.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=1.39;SOR=0.838;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,9:38:99:0|1:11017609_T_C:330,0,1739:11017609
chr1	11017617	rs34691090	G	C	925.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DB;DP=39;ExcessHet=3.9794;FS=1.137;MQ=60.00;MQRankSum=0.00;QD=13.22;ReadPosRankSum=0.837;SOR=0.984;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,10:39:99:0|1:11017609_T_C:330,0,1744:11017609
chr1	11017634	rs35950437	C	T	809.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=46;ExcessHet=3.9794;FS=2.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.639;SOR=1.090;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,14:46:99:357,0,939
chr1	11018723	rs60676743	A	G	1828.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194e+00;DB;DP=134;ExcessHet=3.0103;FS=2.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=1.58;SOR=0.900;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,75:134:99:1837,0,1468
chr1	11024353	rs6659231	A	G	844.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=1.14;SOR=0.718;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,34:70:99:853,0,898
chr1	11024381	rs6659326	A	G	1717.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=56;ExcessHet=3.9794;FS=8.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-2.340e-01;SOR=1.461;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,32:56:99:883,0,644
chr1	11024395	rs11121663	T	C	1997.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=44;ExcessHet=3.9794;FS=3.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=-8.740e-01;SOR=0.437;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:801,0,519
chr1	11074250	rs3765895	A	G	457.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=4.977;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	11077259	.	CTT	CT,C	313.11	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.00;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.42;ReadPosRankSum=0.524;SOR=1.402;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,8,4:12:47:269,81,47,151,0,150
chr1	11079077	rs2273348	A	G	1929.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561e+00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=0.497;SOR=0.604;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:525,0,329
chr1	11080723	rs143130606	T	TG	1978.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.01;SOR=3.651;VQSLOD=3.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:570,48,0
chr1	11080807	rs57781131	CA	C	122.47	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.42;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:10:88,0,10
chr1	11082054	rs3835416	AG	A	657.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=0.712;SOR=0.818;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:60:181,0,60
chr1	11086097	rs3215616	A	AT	4708.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DB;DP=91;ExcessHet=3.9794;FS=2.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.097;SOR=0.537;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,48:91:99:1515,0,1333
chr1	11086332	rs2273347	A	G	300.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.35;ReadPosRankSum=0.967;SOR=1.802;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:107,0,66
chr1	11087524	rs1782455	G	A	7296.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=91;ExcessHet=3.0103;FS=0.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=-1.432e+00;SOR=0.770;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2752,268,0
chr1	11087835	rs1782454	T	C	1428.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.24;SOR=3.737;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr1	11090897	rs2273346	A	G	1163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=-1.509e+00;SOR=0.665;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,42:68:99:1172,0,619
chr1	11090916	rs12711521	C	A	3187.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451e+00;DB;DP=47;ExcessHet=3.9794;FS=1.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=0.512;SOR=0.576;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:577,0,809
chr1	11091031	rs9430176	G	A	172.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=1.06;SOR=1.609;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:181,0,183
chr1	11094757	rs70977538	G	GA	1021.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.71;QD=27.60;SOR=3.312;VQSLOD=4.57;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:330,42,0
chr1	11095039	rs6695096	C	T	1812.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.96;SOR=1.262;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:507,48,0
chr1	11097547	rs116685064	C	A	115.04	PASS	AC=1;AF=0.500;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.55;SOR=2.833;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:0,3:3:55:0|1:11097547_C_A:123,0,55:11097547
chr1	11097548	rs114377430	G	A	115.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.76;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:55:0|1:11097547_C_A:123,0,55:11097547
chr1	11097550	rs35733753	G	A	115.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.76;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:55:0|1:11097547_C_A:123,0,55:11097547
chr1	11097867	rs12142107	C	T	599.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DB;DP=38;ExcessHet=3.0103;FS=4.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-6.750e-01;SOR=1.081;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:608,0,407
chr1	11103348	rs72550852	G	C	623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DB;DP=61;ExcessHet=3.0103;FS=1.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.266;SOR=0.873;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,24:61:99:632,0,1002
chr1	11104845	rs9430347	T	C	1420.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.60;POSITIVE_TRAIN_SITE;QD=28.96;SOR=1.445;VQSLOD=4.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:421,33,0
chr1	11105106	rs2273345	C	T	3697.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=53;ExcessHet=3.9794;FS=9.235;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=0.853;SOR=1.340;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,30:53:99:0|1:11105106_C_T:856,0,536:11105106
chr1	11105122	rs2273344	C	T	6740.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=1.112;VQSLOD=18.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,56:56:99:1|1:11105106_C_T:2142,168,0:11105106
chr1	11106359	rs10779750	T	C	910.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.53;SOR=4.003;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr1	11107439	rs7548659	G	T	177.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=7;ExcessHet=1.5490;FS=2.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:70:70,0,111
chr1	11114940	rs13616	G	T	350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939e+00;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.373;SOR=0.474;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:359,0,433
chr1	11115177	rs376653450	CT	C	598.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=22;ExcessHet=6.9897;FS=3.300;MQ=59.97;MQRankSum=0.00;QD=10.32;ReadPosRankSum=0.934;SOR=0.397;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,13:22:55:268,0,55
chr1	11119135	rs743577	G	A	976.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.152;SOR=0.654;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:353,0,603
chr1	11119177	rs743576	C	T	433.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-7.500e-02;SOR=0.990;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:442,0,521
chr1	11119899	rs7545802	T	C	10122.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.34;SOR=1.278;VQSLOD=17.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3348,342,0
chr1	11126848	rs41274502	T	C	811.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=0.736;SOR=0.838;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,27:42:99:820,0,392
chr1	11126941	rs6701726	C	T	1141.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-7.600e-02;SOR=0.818;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:288,0,209
chr1	11128001	rs2791657	A	G	941.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622e+00;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=-7.100e-02;SOR=0.936;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:246,0,156
chr1	11128329	rs2791656	A	G	386.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=1.15;SOR=1.473;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr1	11128654	rs2791655	G	A	1266.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-1.760e-01;SOR=0.735;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:393,0,413
chr1	11129848	rs2791653	A	G	3310.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=41;ExcessHet=3.9794;FS=3.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=0.752;SOR=0.400;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1578,123,0
chr1	11130643	rs910660	A	G	123.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:67,0,31
chr1	11132217	rs1130683	G	A	1909.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=53;ExcessHet=6.9897;FS=1.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.180;SOR=0.595;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,30:53:99:806,0,500
chr1	11133934	.	C	CA	96.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DP=7;ExcessHet=6.9897;FS=1.271;MQ=58.43;MQRankSum=0.00;QD=2.91;ReadPosRankSum=-2.630e-01;SOR=0.465;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:61:0|1:11133934_C_CA:61,0,77:11133934
chr1	11133956	.	A	AAAG	678.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DP=24;ExcessHet=6.9897;FS=2.201;MQ=59.23;MQRankSum=0.00;QD=8.70;ReadPosRankSum=0.391;SOR=0.601;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,5:24:99:1|0:11133934_C_CA:129,0,451:11133934
chr1	11134157	rs2748876	T	G	2516.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.108e+00;DB;DP=37;ExcessHet=3.9794;FS=2.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=1.30;SOR=0.701;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1299,111,0
chr1	11134470	.	A	ATT	320.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DP=31;ExcessHet=3.0103;FS=2.222;MQ=60.00;MQRankSum=0.00;QD=13.93;ReadPosRankSum=0.059;SOR=1.721;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,7:31:99:329,0,924
chr1	11134494	rs12121163	G	C	395.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.422;SOR=0.330;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:404,0,950
chr1	11134594	rs12118686	T	C	117.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=1.01;SOR=0.223;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:126,0,100
chr1	11136815	rs72870088	T	C	629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-4.630e-01;SOR=0.693;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:638,0,661
chr1	11136838	rs17036297	A	G	811.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DB;DP=66;ExcessHet=3.0103;FS=3.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-3.530e-01;SOR=0.326;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,32:66:99:820,0,942
chr1	11137294	rs3737619	C	T	211.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.60;ReadPosRankSum=-8.520e-01;SOR=0.693;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:220,0,179
chr1	11137661	rs2273339	A	G	914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=58;ExcessHet=3.0103;FS=2.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=1.11;SOR=0.397;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:923,0,574
chr1	11137778	rs2259886	C	T	621.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=21;ExcessHet=6.9897;FS=8.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=-6.900e-02;SOR=0.127;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:187,0,468
chr1	11139595	rs3737620	C	T	61.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,73
chr1	11139731	rs144662222	G	A	872.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=-5.900e-02;SOR=0.788;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:881,0,555
chr1	11140610	.	GAA	G	354.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DP=13;ExcessHet=3.0103;FS=1.524;MQ=59.71;MQRankSum=-3.650e-01;QD=27.25;ReadPosRankSum=-2.550e-01;SOR=1.270;VQSLOD=0.370;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:13:99:363,0,113
chr1	11140621	rs58972264	AC	A	586.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=59.67;MQRankSum=0.00;QD=16.75;ReadPosRankSum=1.19;SOR=0.682;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:13:96:96,0,402
chr1	11140623	rs374511075	ACAC	A	590.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.67;MQRankSum=0.00;QD=16.87;ReadPosRankSum=1.08;SOR=0.682;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:96:96,0,402
chr1	11140651	.	ACACACACACACG	A	231.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DP=10;ExcessHet=3.0103;FS=0.000;MQ=58.52;MQRankSum=-5.240e-01;QD=23.13;ReadPosRankSum=0.303;SOR=1.329;VQSLOD=0.354;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,150
chr1	11141030	rs2273338	G	C	673.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=50;ExcessHet=3.0103;FS=3.989;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=1.53;SOR=1.053;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,20:50:99:682,0,935
chr1	11141102	rs2273337	A	G	785.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098e+00;DB;DP=68;ExcessHet=3.0103;FS=14.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-4.080e-01;SOR=0.103;VQSLOD=14.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:794,0,1172
chr1	11141187	rs2258621	C	G	6814.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.488;DB;DP=147;ExcessHet=3.9794;FS=1.303;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=0.904;SOR=0.795;VQSLOD=6.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4453,441,0
chr1	11141406	rs72871405	T	C	555.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=35;ExcessHet=3.0103;FS=2.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-4.300e-01;SOR=0.301;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:564,0,622
chr1	11148389	rs140310085	C	CTTCA	108.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.05;ReadPosRankSum=1.96;SOR=0.693;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,176
chr1	11150682	rs3737621	C	T	870.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846e+00;DB;DP=67;ExcessHet=3.0103;FS=2.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-4.090e-01;SOR=0.880;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,36:67:99:879,0,871
chr1	11151314	rs2273336	T	C	216.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700e-01;DB;DP=16;ExcessHet=3.0103;FS=14.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.258e+00;SOR=1.399;VQSLOD=13.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:225,0,306
chr1	11151480	rs2273335	T	C	515.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.563e+00;DB;DP=49;ExcessHet=3.0103;FS=4.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=1.44;SOR=0.273;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,24:49:99:524,0,688
chr1	11151779	rs1148482	A	G	582.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.9794;FS=3.032;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.10;ReadPosRankSum=0.825;SOR=0.156;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr1	11159571	rs12136339	G	A	192.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=3.611;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr1	11159823	rs12133922	T	C	1549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=189;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=2.00;SOR=0.705;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,73:189:99:1558,0,2604
chr1	11159968	rs17552394	G	A	473.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=46;ExcessHet=3.0103;FS=1.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=0.138;SOR=1.056;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,16:46:99:0|1:11159968_G_A:482,0,1686:11159968
chr1	11159989	rs17552387	T	C	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.226;SOR=0.437;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,9:30:99:0|1:11159968_G_A:351,0,1411:11159968
chr1	11167146	rs12139042	G	A	2022.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.930e-01;DB;DP=183;ExcessHet=3.0103;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=1.27;SOR=0.742;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,87:183:99:2031,0,2413
chr1	11167760	rs12117235	C	T	126.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DB;DP=12;ExcessHet=3.0103;FS=8.195;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.705;SOR=0.027;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:135,0,227
chr1	11167829	rs12117241	C	T	64.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:73,0,34
chr1	11167910	rs12117270	C	T	99.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:108,0,30
chr1	11168529	rs112932533	A	G	123.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.990e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-8.170e-01;SOR=0.269;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:132,0,286
chr1	11169676	rs2275525	C	T	767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.487;SOR=0.639;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,34:80:99:776,0,1079
chr1	11171226	rs17036350	C	T	1517.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DB;DP=101;ExcessHet=3.0103;FS=0.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-1.031e+00;SOR=0.833;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,60:101:99:1526,0,894
chr1	11174331	rs17235654	T	C	364.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=38;ExcessHet=3.0103;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.598;SOR=1.038;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,15:38:99:373,0,680
chr1	11175270	rs2275522	G	T	126.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=1.72;SOR=0.693;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,148
chr1	11181457	rs17235633	G	T	1546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=144;ExcessHet=3.0103;FS=1.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-5.840e-01;SOR=0.833;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,60:144:99:1555,0,2083
chr1	11181630	rs12143194	G	A	166.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=1.56;SOR=0.693;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:175,0,173
chr1	11182261	rs113055615	G	A	1457.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.78;ReadPosRankSum=-2.260e-01;SOR=0.751;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,29:63:99:896,0,942
chr1	11184489	rs868080	C	T	364.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.14;ReadPosRankSum=-2.200e-01;SOR=0.793;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,17:51:99:373,0,814
chr1	11186897	rs3737611	A	G	715.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=49;ExcessHet=3.0103;FS=1.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-1.273e+00;SOR=0.990;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,23:49:99:724,0,678
chr1	11187893	rs1770344	T	C	6061.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=2.577;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1941,174,0
chr1	11189191	rs3730379	G	A	152.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=13;ExcessHet=3.0103;FS=6.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.069;SOR=2.833;VQSLOD=17.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:161,0,218
chr1	11192956	rs2275526	A	G	93.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-1.960e+00;SOR=0.693;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:102,0,104
chr1	11193401	rs12141233	A	C	559.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455e+00;DB;DP=32;ExcessHet=3.0103;FS=1.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-2.640e-01;SOR=0.316;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,15:32:99:0|1:11193401_A_C:568,0,1768:11193401
chr1	11193406	rs17235612	C	T	559.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456e+00;DB;DP=32;ExcessHet=3.0103;FS=1.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.057;SOR=0.247;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,14:32:99:0|1:11193401_A_C:568,0,1847:11193401
chr1	11193408	rs12122483	C	T	559.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=31;ExcessHet=3.0103;FS=2.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-2.180e-01;SOR=0.231;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,14:31:99:0|1:11193401_A_C:568,0,1847:11193401
chr1	11194591	rs3730381	G	A	1533.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=116;ExcessHet=3.0103;FS=8.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-5.860e-01;SOR=1.128;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,59:116:99:1542,0,1376
chr1	11194836	rs12142442	A	G	221.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=2.10;SOR=1.863;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:48:230,0,48
chr1	11199881	rs12121277	G	T	179.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=1.23;SOR=0.223;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:188,0,486
chr1	11205058	rs1057079	C	T	3224.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.580e-01;DB;DP=74;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-9.970e-01;SOR=0.687;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,43:74:99:1081,0,714
chr1	11206690	rs2275942	A	T	1072.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699e+00;DB;DP=99;ExcessHet=3.0103;FS=3.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-1.489e+00;SOR=0.419;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1081,0,1362
chr1	11227360	rs17235598	G	T	264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.560e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-6.930e-01;SOR=0.301;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,9:18:99:0|1:11227360_G_T:273,0,653:11227360
chr1	11227365	rs58667988	C	T	264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-9.570e-01;SOR=0.301;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,9:18:99:0|1:11227360_G_T:273,0,653:11227360
chr1	11252552	rs10864492	C	T	171.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-3.660e-01;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:65:180,0,65
chr1	11253844	rs12122575	C	T	689.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108e+00;DB;DP=56;ExcessHet=3.0103;FS=2.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-1.148e+00;SOR=0.334;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:698,0,913
chr1	11254843	rs12143172	T	C	606.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=50;ExcessHet=3.0103;FS=1.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-6.440e-01;SOR=0.473;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,20:50:99:615,0,890
chr1	11255008	rs2076658	T	C	571.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064e+00;DB;DP=53;ExcessHet=3.0103;FS=1.083;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.214;SOR=0.990;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:580,0,760
chr1	11259830	rs11121697	A	C	393.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=-4.310e-01;SOR=2.670;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,10:12:46:402,0,46
chr1	11264828	rs2273127	A	C	310.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=25;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-1.333e+00;SOR=0.093;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:319,0,499
chr1	11273418	rs12116957	T	G	296.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=0.706;SOR=0.223;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:305,0,264
chr1	11276126	rs113739710	A	AT	761.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476e+00;DB;DP=39;ExcessHet=3.0103;FS=4.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=0.354;SOR=0.260;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,22:39:99:770,0,567
chr1	11288618	rs4845985	G	A	2325.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133e+00;DB;DP=37;ExcessHet=3.9794;FS=0.782;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=1.58;SOR=0.880;VQSLOD=6.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1291,111,0
chr1	11288633	rs4845986	G	C	2388.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.555e+00;DB;DP=38;ExcessHet=3.9794;FS=0.746;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=2.31;SOR=0.813;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1310,114,0
chr1	11288758	rs1064261	G	A	6895.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.94;DB;DP=131;ExcessHet=3.9794;FS=3.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=1.19;SOR=0.874;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4015,389,0
chr1	11289161	rs2076655	G	A	544.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=0.327;SOR=1.445;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,187
chr1	11292666	rs10864495	T	A	743.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.500e-01;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=-1.050e-01;SOR=0.941;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:236,0,210
chr1	11292753	rs2024625	A	G	247.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=-9.670e-01;SOR=0.446;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:180,18,0
chr1	11293200	rs7541998	C	T	438.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.9794;FS=15.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=-9.670e-01;SOR=1.184;VQSLOD=12.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr1	11293216	rs74216125	A	G	135.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-1.000e-02;SOR=0.446;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:144,0,182
chr1	11294474	rs718206	T	A	1774.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.564e+00;DB;DP=30;ExcessHet=3.9794;FS=3.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=0.226;SOR=0.346;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1054,90,0
chr1	11297762	rs7524202	T	C	2591.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.510e-01;DB;DP=46;ExcessHet=3.9794;FS=0.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.641;SOR=0.614;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1490,138,0
chr1	11298739	rs12132215	T	C	341.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=30;ExcessHet=3.0103;FS=1.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-1.880e-01;SOR=1.274;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:350,0,435
chr1	11298790	rs2024627	T	C	836.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.04;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=0.391;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:349,30,0
chr1	11298823	rs35144517	C	CT	80.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.03;ReadPosRankSum=-9.670e-01;SOR=0.551;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,1:3:16:16,0,43
chr1	11301714	rs1135172	A	G	6593.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.829e+00;DB;DP=126;ExcessHet=3.9794;FS=2.507;MQ=60.00;MQRankSum=0.931;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=0.343;SOR=0.885;VQSLOD=2.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3701,378,0
chr1	11301841	rs2076656	C	A	866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.741e+00;DB;DP=67;ExcessHet=3.0103;FS=1.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.345;SOR=0.462;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,32:67:99:875,0,1066
chr1	11303153	rs12141961	C	A	247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.517e+00;DB;DP=30;ExcessHet=3.0103;FS=2.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=-1.343e+00;SOR=1.942;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,10:30:99:256,0,631
chr1	11317310	rs12121319	C	T	627.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DB;DP=47;ExcessHet=3.0103;FS=3.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-3.190e-01;SOR=0.237;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:636,0,818
chr1	11317320	rs2092642	C	T	1880.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=43;ExcessHet=6.9897;FS=6.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.037;SOR=1.472;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:650,0,916
chr1	11317402	rs181440999	G	A	211.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.22;ReadPosRankSum=-7.020e-01;SOR=0.859;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:220,0,175
chr1	11318236	rs7525957	C	T	337.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=5;ExcessHet=3.9794;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=1.47;SOR=0.160;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:168,15,0
chr1	11318763	rs2076657	C	G	424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-4.050e-01;SOR=0.368;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:153,0,407
chr1	11319587	rs4845988	A	G	2295.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040e+00;DB;DP=47;ExcessHet=6.9897;FS=2.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-3.620e-01;SOR=1.041;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,27:47:99:774,0,533
chr1	11561164	rs41274528	G	A	1040.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=1.79;SOR=0.673;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,39:73:99:1049,0,954
chr1	11561937	rs12144924	C	T	2744.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.058e+00;DB;DP=218;ExcessHet=3.0103;FS=2.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-2.800e-02;SOR=0.527;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,110:218:99:2753,0,3044
chr1	11562913	rs60362998	C	T	2024.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=155;ExcessHet=3.0103;FS=2.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=1.06;SOR=0.878;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,79:155:99:2033,0,1729
chr1	11563172	rs61054790	G	A	80.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.01;SOR=0.495;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:89:89,0,140
chr1	11575398	rs12135502	G	A	2256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=164;ExcessHet=3.0103;FS=1.366;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-3.640e-01;SOR=0.551;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,86:164:99:2265,0,2017
chr1	11579470	rs2072994	G	A	12528.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=184;ExcessHet=3.9794;FS=1.864;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=1.57;SOR=0.849;VQSLOD=6.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,96:184:99:2438,0,2137
chr1	11584318	rs149451737	T	A	147.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183e+00;DB;DP=12;ExcessHet=3.0103;FS=2.398;MQ=60.00;MQRankSum=0.00;QD=12.27;ReadPosRankSum=-1.524e+00;SOR=0.223;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:156,0,172
chr1	11590776	rs2244401	T	A	123.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=-4.870e-01;SOR=0.138;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,4:16:99:0|1:11590776_T_A:132,0,857:11590776
chr1	11590778	rs2244400	T	A	123.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=-3.650e-01;SOR=0.138;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,4:16:99:0|1:11590776_T_A:132,0,857:11590776
chr1	11593640	rs2745297	A	G	1170.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.62;SOR=3.126;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:238,21,0
chr1	11593793	rs113116961	T	TGCACACACGCAC	6044.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DB;DP=44;ExcessHet=3.0103;FS=2.760;MQ=60.00;MQRankSum=0.00;QD=29.76;ReadPosRankSum=-1.370e+00;SOR=1.761;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:2362,168,0
chr1	11594400	rs2235663	T	C	2564.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=99;ExcessHet=3.9794;FS=4.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.703;SOR=1.068;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,37:99:99:915,0,1533
chr1	11595231	rs77317367	G	C	415.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=44;ExcessHet=3.0103;FS=2.923;MQ=60.00;MQRankSum=0.00;QD=9.44;ReadPosRankSum=0.354;SOR=1.387;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:424,0,733
chr1	11595295	rs2594311	C	G	195.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=14;ExcessHet=3.0103;FS=2.688;MQ=60.00;MQRankSum=0.00;QD=13.95;ReadPosRankSum=-2.314e+00;SOR=0.160;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:204,0,265
chr1	11595390	rs2745296	C	T	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.686e+00;DB;DP=19;ExcessHet=3.0103;FS=8.512;MQ=59.52;MQRankSum=1.16;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.204;SOR=2.910;VQSLOD=-4.546e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:341,0,334
chr1	11596455	rs2594310	C	T	2109.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DB;DP=181;ExcessHet=3.0103;FS=0.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-6.100e-02;SOR=0.630;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,85:181:99:2118,0,2401
chr1	11596762	rs2235666	C	T	1520.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.170e-01;DB;DP=86;ExcessHet=3.9794;FS=2.230;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-3.170e-01;SOR=0.936;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,35:86:99:881,0,1466
chr1	11596864	rs2745295	A	G	293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=2.15;SOR=0.941;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:302,0,577
chr1	11596912	rs2745294	T	C	168.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.934;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:177,0,245
chr1	11708736	rs1055547	T	C	4824.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039e+00;DB;DP=152;ExcessHet=1.5490;FS=1.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=0.778;SOR=0.614;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,84:152:99:1979,0,1665
chr1	11709051	rs56192923	A	AG	188.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=58.48;MQRankSum=-2.100e-01;QD=20.93;ReadPosRankSum=-3.660e-01;SOR=1.022;VQSLOD=0.623;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:197,0,153
chr1	11709052	rs4397658	C	G,CCCAG	1638.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.283;DB;DP=9;ExcessHet=3.0103;FS=7.777;MQ=59.59;MQRankSum=0.00;QD=34.85;ReadPosRankSum=0.421;SOR=0.084;VQSLOD=3.49;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,4,5:9:99:572,230,197,121,0,153
chr1	11710221	rs72869709	G	C	401.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=-2.318e+00;SOR=1.061;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:410,0,281
chr1	11710312	rs76578489	C	T	273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.537;SOR=1.302;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:282,0,396
chr1	11710779	.	C	CGCG	5307.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e+00;DP=83;ExcessHet=6.9897;FS=4.379;MQ=60.00;MQRankSum=0.00;QD=20.26;ReadPosRankSum=-3.230e-01;SOR=0.964;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1599,0,1772
chr1	11714368	rs2272983	T	G	4905.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=-3.580e-01;SOR=0.733;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,36:77:99:981,0,1065
chr1	11721032	rs34689681	C	CTA	105.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-1.006e+00;SOR=0.495;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,169
chr1	11728675	rs7513972	C	T	2525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=234;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-3.200e-01;SOR=0.683;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:134,100:234:99:2534,0,3305
chr1	11728952	rs7514198	C	T	2635.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550e-01;DB;DP=225;ExcessHet=3.0103;FS=1.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.666;SOR=0.575;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,107:225:99:2644,0,2988
chr1	11731927	rs3215521	AG	A	1197.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e-01;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.22;ReadPosRankSum=-1.170e-01;SOR=0.701;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,22:46:99:523,0,559
chr1	11735269	rs2233026	G	A	906.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=72;ExcessHet=3.0103;FS=2.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-1.263e+00;SOR=1.012;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,35:72:99:915,0,870
chr1	11735377	rs2272982	G	C	378.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.947;SOR=0.481;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:206,0,244
chr1	11737051	rs2294638	G	C	1585.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=51;ExcessHet=3.9794;FS=2.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.481;SOR=0.943;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:692,0,589
chr1	11737551	rs2233018	C	T	1139.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=110;ExcessHet=3.0103;FS=0.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.758;SOR=0.800;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,49:110:99:1148,0,1445
chr1	11737882	rs7542916	C	T	101.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.842;SOR=1.022;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:66:110,0,66
chr1	11772303	rs1883574	A	G	8223.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=100;ExcessHet=3.0103;FS=1.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=-1.090e+00;SOR=0.833;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3227,299,0
chr1	11772526	rs1883573	A	G	2082.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.12;SOR=1.903;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2099,177,0
chr1	11774979	rs5772471	GC	G	208.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.73;SOR=3.912;VQSLOD=6.05;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr1	11779499	rs4846028	T	C	2209.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.062;DB;DP=33;ExcessHet=3.9794;FS=5.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-3.800e-01;SOR=1.410;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1099,99,0
chr1	11782781	rs7533583	G	C	1999.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;DB;DP=43;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=-8.450e-01;SOR=0.777;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1325,129,0
chr1	11782884	rs368231456	TC	T	100.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.13;ReadPosRankSum=-8.300e-01;SOR=0.892;VQSLOD=5.10;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,3:12:42:0|1:11782884_TC_T:42,0,180:11782884
chr1	11782886	rs6540990	C	T	1088.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.80;ReadPosRankSum=1.35;SOR=0.557;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,9:12:42:1|0:11782884_TC_T:180,0,42:11782884
chr1	11796168	rs140821677	CGGGCG	C	3542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=2.455;VQSLOD=6.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1260,84,0
chr1	11807426	rs12752700	C	T	5263.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=117;ExcessHet=1.5490;FS=5.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=-1.375e+00;SOR=1.177;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3495,349,0
chr1	11808706	rs11121819	T	G	2500.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=59.75;POSITIVE_TRAIN_SITE;QD=23.99;SOR=5.074;VQSLOD=5.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2517,199,0
chr1	11824133	rs4845875	A	C	371.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=1.04;SOR=0.914;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:78,0,65
chr1	11824242	rs4845876	A	C	1875.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=27;ExcessHet=3.0103;FS=3.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=-1.093e+00;SOR=0.233;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:407,0,440
chr1	11824303	rs4845877	T	C	3918.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DB;DP=53;ExcessHet=3.0103;FS=0.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.40;ReadPosRankSum=-7.580e-01;SOR=0.998;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,28:53:99:796,0,655
chr1	11824346	rs4845878	G	A	5291.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811e+00;DB;DP=73;ExcessHet=3.0103;FS=7.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=1.60;SOR=1.363;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,36:73:99:869,0,1004
chr1	11824556	rs4845879	A	G	5646.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DB;DP=64;ExcessHet=3.0103;FS=2.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=-2.214e+00;SOR=1.031;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,36:64:99:962,0,642
chr1	11824575	rs10864536	T	C	5613.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=52;ExcessHet=3.0103;FS=6.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.24;ReadPosRankSum=-1.238e+00;SOR=1.519;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,25:52:99:0|1:11824575_T_C:877,0,1279:11824575
chr1	11824578	rs11121825	C	T	5498.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DB;DP=48;ExcessHet=3.0103;FS=7.001;MQ=60.00;MQRankSum=0.00;QD=27.31;ReadPosRankSum=-1.467e+00;SOR=1.648;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,23:48:99:0|1:11824575_T_C:841,0,1285:11824575
chr1	11824621	rs11121826	T	C	3184.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=30;ExcessHet=3.0103;FS=12.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.00;ReadPosRankSum=0.706;SOR=3.509;VQSLOD=12.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:528,0,405
chr1	11825851	rs10218813	G	C	3447.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618e+00;DB;DP=31;ExcessHet=3.0103;FS=1.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=1.38;SOR=0.446;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:31:99:507,0,393
chr1	11826630	rs6668699	C	T	23177.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270e-01;DB;DP=357;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=-6.940e-01;SOR=0.719;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:179,178:357:99:4405,0,4499
chr1	11827180	rs6540995	A	G	4652.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=23.94;SOR=2.647;VQSLOD=3.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1313,105,0
chr1	11827304	rs6540996	A	G	6538.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=0.830;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2800,275,0
chr1	11827355	rs6540997	A	G	2146.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=59;ExcessHet=3.0103;FS=25.416;MQ=59.76;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=-1.087e+00;SOR=1.313;VQSLOD=-2.146e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,19:59:99:459,0,1083
chr1	11828238	rs4845880	G	A	6260.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=81;ExcessHet=3.0103;FS=0.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=-8.760e-01;SOR=0.764;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,34:81:99:817,0,1100
chr1	11828319	rs4845881	G	A	6439.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.50;DB;DP=70;ExcessHet=3.0103;FS=2.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.50;ReadPosRankSum=1.11;SOR=0.522;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,29:70:99:937,0,1088
chr1	11831615	rs6667720	C	T	3974.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=130;ExcessHet=3.9794;FS=3.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=1.72;SOR=0.923;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,53:130:99:1161,0,1866
chr1	11831756	rs6680385	A	G	2399.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=1.06;SOR=0.700;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:621,0,470
chr1	11832100	rs11121827	T	A	4549.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e+00;DB;DP=80;ExcessHet=3.9794;FS=4.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=-4.450e-01;SOR=0.445;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,36:80:99:898,0,1211
chr1	11832311	rs10779764	G	C	4304.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=45;ExcessHet=3.9794;FS=1.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=0.306;SOR=0.922;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,20:45:99:528,0,645
chr1	11832368	rs112234774	G	C	316.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.58;SOR=0.527;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:325,0,452
chr1	11836318	rs6659425	G	A	606.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.51;SOR=5.549;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:292,21,0
chr1	11836441	rs6699669	T	C	5953.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.42;SOR=2.255;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,46:46:99:1|1:11836441_T_C:1854,141,0:11836441
chr1	11836442	rs6659541	G	A	2891.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=0.870;SOR=0.667;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,23:47:99:0|1:11836441_T_C:663,0,638:11836441
chr1	11836628	rs6699881	T	C	4749.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385e+00;DB;DP=77;ExcessHet=3.9794;FS=3.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.424;SOR=0.579;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1163,0,910
chr1	11836682	rs7538516	C	T	3608.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=73;ExcessHet=3.9794;FS=4.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=1.34;SOR=1.011;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,32:73:99:854,0,1073
chr1	11836868	rs4846039	A	G	918.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=16;ExcessHet=3.9794;FS=2.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=0.666;SOR=0.330;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:254,0,244
chr1	11838848	rs6697244	G	T	7353.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.369e+00;DB;DP=139;ExcessHet=3.9794;FS=3.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=-7.000e-01;SOR=0.625;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,63:139:99:1757,0,2457
chr1	11839033	rs55668272	G	T	945.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.306e+00;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=0.471;SOR=0.706;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,39:67:99:954,0,791
chr1	11839923	rs12561919	C	T	154.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.475e+00;DB;DP=32;ExcessHet=3.0103;FS=1.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.82;ReadPosRankSum=0.536;SOR=0.669;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,11:32:99:163,0,579
chr1	11839966	rs4846043	G	A	1933.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=22;ExcessHet=3.9794;FS=3.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-4.950e-01;SOR=1.018;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:359,0,236
chr1	11839998	rs4846044	T	C	1679.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DB;DP=16;ExcessHet=3.0103;FS=3.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=-2.180e-01;SOR=1.682;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:156,0,263
chr1	11842144	rs10864542	C	G	3514.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=1.99;SOR=0.689;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,29:48:99:863,0,472
chr1	11844330	rs10864543	C	T	8322.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=157;ExcessHet=3.9794;FS=0.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.676;SOR=0.756;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,86:157:99:2172,0,1660
chr1	11844827	rs4845883	A	G	586.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.65;SOR=5.421;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	11845113	rs11587953	G	A	4997.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=2.916;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1735,149,0
chr1	11845169	rs11586659	T	G	4498.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=96;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.51;ReadPosRankSum=0.973;SOR=0.664;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,41:96:99:1109,0,1520
chr1	11845518	rs2151655	G	C	392.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=1.24;SOR=0.776;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:50:50,0,215
chr1	11847334	rs35134728	G	GGAA	1576.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.33;ReadPosRankSum=1.57;SOR=1.096;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:255,0,477
chr1	11847740	rs35562212	CCT	C	1326.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.22;ReadPosRankSum=-2.070e-01;SOR=0.787;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,35:77:99:1335,0,1617
chr1	11847759	rs3737966	C	T	4239.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=74;ExcessHet=3.9794;FS=1.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=1.26;SOR=0.585;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:976,0,856
chr1	11848879	rs2077360	A	G	5904.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=1.609;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1849,171,0
chr1	11849447	rs868014	A	G	11076.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.29;SOR=1.060;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3287,324,0
chr1	11850750	rs35737219	G	A	1804.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=124;ExcessHet=3.0103;FS=1.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.839;SOR=0.510;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,71:124:99:1813,0,1261
chr1	11851118	rs7518348	A	G	2325.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=1.647;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:794,66,0
chr1	11854457	rs4846051	G	A	10652.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=34.25;SOR=0.959;VQSLOD=5.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,89:89:99:1|1:11854457_G_A:3387,270,0:11854457
chr1	11854476	rs1801131	T	G	1432.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=95;ExcessHet=3.0103;FS=1.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-8.880e-01;SOR=0.888;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,51:95:99:0|1:11854457_G_A:1441,0,1133:11854457
chr1	11854755	rs1994798	G	A	4572.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540e-01;DB;DP=95;ExcessHet=3.9794;FS=8.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=0.697;SOR=0.665;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,46:95:99:1136,0,1284
chr1	11856378	rs1801133	G	A	2764.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;DB;DP=107;ExcessHet=3.9794;FS=3.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.543;SOR=0.495;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,50:107:99:1223,0,1344
chr1	11860120	rs11121832	T	C	1727.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.652e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=0.645;SOR=1.209;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:781,60,0
chr1	11860465	rs13306567	C	G	1021.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134e+00;DB;DP=91;ExcessHet=3.0103;FS=4.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.25;SOR=0.345;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,40:91:99:1030,0,1573
chr1	11860683	rs7533315	T	C	1167.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.301e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=1.51;SOR=1.225;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:11860683_T_C:659,51,0:11860683
chr1	11860684	rs35593468	G	A	179.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471e+00;DB;DP=17;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=0.704;SOR=1.688;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,6:17:99:0|1:11860683_T_C:188,0,377:11860683
chr1	11862778	rs17367504	A	G	52.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:61,0,71
chr1	11866183	rs13306560	C	T	173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.226;SOR=1.022;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:182,0,189
chr1	11866442	rs111334345	G	A	78.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=11.19;ReadPosRankSum=0.652;SOR=2.833;VQSLOD=17.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:87:87,0,123
chr1	11867044	rs3737964	T	C	2119.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.840e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=1.15;SOR=0.631;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:638,63,0
chr1	11875709	rs111650969	C	G	410.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=-4.990e-01;SOR=1.179;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:419,0,223
chr1	11876300	rs41275472	T	G	220.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:98:229,0,98
chr1	11876417	rs198391	C	T	1845.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166e+00;DB;DP=19;ExcessHet=3.9794;FS=10.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=1.72;SOR=0.061;VQSLOD=18.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:298,0,364
chr1	11876902	rs55875233	CTT	C	237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.86;ReadPosRankSum=1.47;SOR=0.392;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,8:20:99:246,0,356
chr1	11877062	rs74866971	C	A	37.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.54;SOR=0.693;VQSLOD=14.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	11879363	rs139473956	TG	T	41.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.89;ReadPosRankSum=-1.465e+00;SOR=0.892;VQSLOD=6.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:50:50,0,157
chr1	11879468	rs78366115	C	T	654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.390e-01;DB;DP=52;ExcessHet=3.0103;FS=1.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.705;SOR=1.075;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:663,0,693
chr1	11879685	rs198393	C	T	1807.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=55;ExcessHet=3.9794;FS=0.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=1.45;SOR=0.803;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:808,0,773
chr1	11879699	rs2050265	A	G	697.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DB;DP=46;ExcessHet=3.0103;FS=3.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-1.605e+00;SOR=1.514;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:706,0,652
chr1	11883629	rs198399	T	A	211.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=1.50;SOR=1.022;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:169,0,146
chr1	11883731	rs12567136	C	T	582.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255e+00;DB;DP=45;ExcessHet=3.0103;FS=1.319;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.045;SOR=0.993;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:591,0,604
chr1	11884555	rs198400	A	G	13503.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=0.775;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3665,341,0
chr1	11884619	rs41275474	G	A	1396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=88;ExcessHet=3.0103;FS=1.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=1.30;SOR=0.472;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1405,0,1010
chr1	11886124	rs111975660	C	CT	108.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.74;ReadPosRankSum=-8.840e-01;SOR=0.976;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:117,0,154
chr1	11886383	rs138460149	C	CTG	1139.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=37;ExcessHet=3.0103;FS=1.632;MQ=60.00;MQRankSum=0.00;QD=30.79;ReadPosRankSum=0.089;SOR=0.350;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,28:37:99:1148,0,301
chr1	11887125	rs41275476	C	T	367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=0.039;SOR=0.804;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,16:42:99:376,0,589
chr1	11887303	rs7537765	A	G	853.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.320e-01;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=0.280;SOR=0.675;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,31:49:99:862,0,425
chr1	11887373	rs374218595	T	TG	1742.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=31;ExcessHet=3.9794;FS=4.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.060;SOR=1.341;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,17:31:99:0|1:11887373_T_TG:658,0,736:11887373
chr1	11887382	rs56190030	A	G	646.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=31;ExcessHet=3.0103;FS=9.454;MQ=60.00;MQRankSum=0.00;QD=20.85;ReadPosRankSum=1.09;SOR=2.584;VQSLOD=15.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,16:31:99:0|1:11887373_T_TG:655,0,758:11887373
chr1	11887487	.	C	CT	133	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.78;ReadPosRankSum=0.674;SOR=0.593;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:18:28,0,18
chr1	11888384	rs198401	A	G	1844.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.721;SOR=0.762;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:532,0,766
chr1	11889213	rs41275482	T	G	1028.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=80;ExcessHet=3.0103;FS=0.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-9.870e-01;SOR=0.880;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,36:80:99:1037,0,1170
chr1	11889468	rs535107	A	G	2560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=85;ExcessHet=3.9794;FS=1.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=1.41;SOR=0.597;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,42:85:99:1254,0,1080
chr1	11889568	rs76219075	G	C	780.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.650e-01;DB;DP=39;ExcessHet=3.0103;FS=5.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.807;SOR=0.182;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,27:39:99:789,0,353
chr1	11893830	rs74771026	T	A	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.254e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.043;SOR=0.301;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:216,0,310
chr1	11893869	rs76337233	C	T	610.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=41;ExcessHet=3.0103;FS=1.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=1.10;SOR=1.251;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:619,0,688
chr1	11895966	rs41275496	G	C	565.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=0.142;SOR=0.334;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:574,0,639
chr1	11896345	rs198402	T	C	462.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=2.63;SOR=0.495;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:81:81,0,251
chr1	11897271	rs198405	T	C	3032.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=85;ExcessHet=3.9794;FS=1.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=1.06;SOR=0.551;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1504,0,1137
chr1	11897592	rs198406	A	G	2745.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=83;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.598;SOR=0.673;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1125,0,1039
chr1	11898228	rs169158	T	C	290.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.987;SOR=0.223;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:214,0,201
chr1	11898849	rs198409	T	G	6999.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086e+00;DB;DP=247;ExcessHet=3.9794;FS=1.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=0.687;SOR=0.529;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:140,107:247:99:2527,0,3702
chr1	11900035	rs198410	G	A	4986.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.57;SOR=5.102;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1459,111,0
chr1	11900142	rs77785799	C	T	1664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215e+00;DB;DP=158;ExcessHet=3.0103;FS=1.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=-6.110e-01;SOR=0.830;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,72:158:99:1673,0,2280
chr1	11900385	rs198411	C	T	1340.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.063e+00;DB;DP=30;ExcessHet=3.9794;FS=3.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=1.57;SOR=2.107;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:522,0,486
chr1	11905981	rs5067	A	G	1469.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e+00;DB;DP=37;ExcessHet=3.9794;FS=3.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-1.146e+00;SOR=0.404;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:583,0,468
chr1	11905995	rs5066	C	A	767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=-3.230e-01;SOR=0.657;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:776,0,550
chr1	11906068	rs5065	A	G	2958.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=94;ExcessHet=3.9794;FS=1.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.106;SOR=0.814;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,52:94:99:1302,0,1004
chr1	11906960	rs198369	T	C	1030.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=23;ExcessHet=3.9794;FS=3.802;MQ=55.80;MQRankSum=3.83;NEGATIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=3.65;SOR=2.242;VQSLOD=-2.303e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,14:23:99:512,0,319
chr1	11917620	rs35207557	T	TA	375.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=34;ExcessHet=3.0103;FS=1.373;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=2.16;SOR=1.022;VQSLOD=6.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,16:34:99:384,0,447
chr1	11971345	rs4845889	T	C	1379.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.75;ReadPosRankSum=0.215;SOR=1.262;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:79:279,0,79
chr1	11980449	rs17037529	T	C	959.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=1.49;SOR=0.696;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:968,0,841
chr1	11982544	rs2639453	T	C	8416.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=124;ExcessHet=3.9794;FS=0.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=1.44;SOR=0.745;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,51:124:99:1252,0,1833
chr1	11983041	rs33910280	G	A	2818.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332e+00;DB;DP=244;ExcessHet=3.0103;FS=4.365;MQ=49.92;MQRankSum=-2.385e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.725;SOR=0.478;VQSLOD=-1.078e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,118:244:99:2827,0,3377
chr1	11986229	rs112019995	G	A	1879.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.020e-01;DB;DP=187;ExcessHet=3.0103;FS=2.571;MQ=59.95;MQRankSum=0.00;QD=10.05;ReadPosRankSum=-3.270e-01;SOR=0.917;VQSLOD=4.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,85:187:99:1888,0,2447
chr1	11995409	rs760188	A	G	32.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=1.609;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
chr1	12004479	.	T	TACACACAC	1103.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DP=15;ExcessHet=3.9794;FS=8.925;MQ=59.68;MQRankSum=0.00;QD=19.35;ReadPosRankSum=-1.104e+00;SOR=2.303;VQSLOD=3.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,3:15:99:117,0,600
chr1	12004512	rs61776487	T	A	183.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-02;DB;DP=24;ExcessHet=3.0103;FS=5.478;MQ=59.85;MQRankSum=-2.124e+00;NEGATIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=0.155;SOR=2.215;VQSLOD=-2.231e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,4:24:99:369,0,879
chr1	12009955	rs7529452	C	T	2459.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-03;DB;DP=114;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.533;SOR=0.662;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,58:114:99:1399,0,1359
chr1	12018378	rs2273290	C	G	283.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=7;ExcessHet=6.9897;FS=3.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-3.660e-01;SOR=1.561;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:74:118,0,74
chr1	12024235	rs1130529	C	T	10330.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=207;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-3.630e-01;SOR=0.683;VQSLOD=6.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,111:207:99:2442,0,2177
chr1	12025353	rs2273291	T	C	784.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=-1.080e-01;SOR=0.569;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:103,0,215
chr1	12026090	rs6678553	A	G	796.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=11;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=-3.270e-01;SOR=2.179;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:141,0,245
chr1	12027204	rs2273293	C	T	3560.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=47;ExcessHet=3.9794;FS=1.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.980;SOR=0.980;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:663,0,548
chr1	12027308	rs3818157	G	A	620.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.189;SOR=1.931;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:108,0,106
chr1	12033113	rs3737961	A	G	7398.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224e+00;DB;DP=101;ExcessHet=3.9794;FS=0.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=0.251;SOR=0.637;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,54:101:99:0|1:12033113_A_G:1976,0,2903:12033113
chr1	12033120	rs3820190	G	C	6884.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=89;ExcessHet=3.9794;FS=1.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.55;ReadPosRankSum=1.11;SOR=0.892;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,45:89:99:0|1:12033113_A_G:1811,0,2889:12033113
chr1	12052405	rs6675934	G	A	659.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=0.598;SOR=1.445;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:52:52,0,230
chr1	12056440	rs2236056	C	T	1436.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=1.66;SOR=0.859;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:359,0,316
chr1	12058606	rs143897072	AAAAAC	A	1348.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940e-01;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.11;ReadPosRankSum=-4.930e-01;SOR=0.900;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,13:25:99:489,0,705
chr1	12062205	rs2236057	A	G	4906.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=118;ExcessHet=6.9897;FS=2.428;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.161;SOR=0.845;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,54:118:99:1450,0,1743
chr1	12062361	rs2236058	C	G	806.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=0.525;SOR=0.481;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:248,0,147
chr1	12067044	rs7550536	T	G	729.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=12;ExcessHet=6.9897;FS=2.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=0.00;SOR=1.262;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:226,0,176
chr1	12071680	rs1042842	A	G	1619.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=22;ExcessHet=3.9794;FS=4.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=1.91;SOR=1.577;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:251,0,344
chr1	12082538	rs77391339	C	A	1580.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.875e+00;DB;DP=128;ExcessHet=3.0103;FS=6.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-1.238e+00;SOR=1.289;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,66:128:99:1589,0,1590
chr1	12082926	rs2295283	A	G	9315.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=130;ExcessHet=3.0103;FS=1.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.16;ReadPosRankSum=0.195;SOR=0.811;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,73:130:99:2033,0,1415
chr1	12091210	rs946461	T	C	1303.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.510e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=0.951;SOR=0.490;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:273,0,361
chr1	12144219	rs1201114	A	G	506.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e-01;DB;DP=15;ExcessHet=6.9897;FS=1.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-5.620e-01;SOR=0.461;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:233,0,176
chr1	12144434	rs1201113	G	A	1277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=120;ExcessHet=3.0103;FS=3.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-1.749e+00;SOR=1.074;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,50:120:99:1286,0,1675
chr1	12144643	rs11569820	G	A	2538.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.780e-01;DB;DP=98;ExcessHet=3.9794;FS=1.168;MQ=59.87;MQRankSum=0.944;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.91;SOR=0.594;VQSLOD=1.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,57:98:99:1448,0,968
chr1	12156846	rs34950439	TCA	T	210.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=30.88;SOR=3.912;VQSLOD=4.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr1	12157076	rs11121856	A	C	2551.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.58;SOR=2.336;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2568,213,0
chr1	12175729	rs1763642	C	T	24057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=0.806;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,260:260:99:7768,776,0
chr1	12183174	rs4846096	A	C	2490.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647e+00;DB;DP=51;ExcessHet=6.9897;FS=1.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=-5.200e-02;SOR=0.522;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,28:51:99:781,0,616
chr1	12198179	rs671106	G	A	756.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.53;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=1.33;SOR=1.402;VQSLOD=3.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:416,30,0
chr1	12198635	rs6419481	T	C	7830.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=32.63;SOR=1.150;VQSLOD=4.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2558,249,0
chr1	12202095	rs755398	G	C	398.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=10;ExcessHet=3.9794;FS=3.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.686;SOR=0.172;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:44:264,0,44
chr1	12226785	rs150257710	AGGGCAGGTGGAGGCC	A	108.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.12;ReadPosRankSum=-1.036e+00;SOR=2.093;VQSLOD=5.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,378
chr1	12248942	rs945439	A	G	929.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DB;DP=92;ExcessHet=3.0103;FS=0.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=-6.450e-01;SOR=0.586;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,37:92:99:938,0,1377
chr1	12248965	rs945438	A	G	728.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DB;DP=76;ExcessHet=3.0103;FS=0.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-4.520e-01;SOR=0.481;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,30:76:99:737,0,1191
chr1	12249020	rs1815530	C	T	391.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=1.37;SOR=0.743;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,16:40:99:400,0,711
chr1	12249031	rs1201157	A	G	2073.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.290e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=1.14;SOR=0.577;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1062,81,0
chr1	12251191	rs472093	T	A	902.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262e+00;DB;DP=38;ExcessHet=3.9794;FS=8.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=2.40;SOR=0.082;VQSLOD=19.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:550,0,613
chr1	12251765	rs498906	T	G	3897.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=149;ExcessHet=3.9794;FS=4.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=2.27;SOR=0.480;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,70:149:99:1823,0,1972
chr1	12251808	rs653667	T	G	16482.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.37;DB;DP=211;ExcessHet=3.0103;FS=0.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=-6.070e-01;SOR=0.777;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,211:211:99:6639,633,0
chr1	12252333	.	CTGTG	C	763.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DP=16;ExcessHet=3.9794;FS=1.935;MQ=60.00;MQRankSum=0.00;QD=20.10;ReadPosRankSum=-2.570e-01;SOR=1.127;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:261,0,417
chr1	12252892	rs1768642	C	T	807.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.480;SOR=0.526;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,5:20:99:117,0,541
chr1	12252955	rs1061622	T	G	2293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=69;ExcessHet=3.9794;FS=0.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.207;SOR=0.641;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,28:69:99:657,0,1010
chr1	12253351	rs636964	T	C	797.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=1.17;SOR=0.615;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:311,0,561
chr1	12254201	rs2275416	G	A	1466.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=40;ExcessHet=3.9794;FS=1.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.163;SOR=0.483;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:534,0,627
chr1	12261972	rs5746051	A	G	2125.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=84;ExcessHet=3.9794;FS=2.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.957;SOR=0.943;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,32:84:99:868,0,1446
chr1	12262298	rs5746053	G	A	588.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.252e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=1.35;SOR=1.445;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:597,0,299
chr1	12266591	rs5746061	A	G	430.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=22;ExcessHet=3.9794;FS=1.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.54;SOR=1.071;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:253,0,296
chr1	12266612	rs5746062	A	G	624.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=28;ExcessHet=3.9794;FS=1.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=0.115;SOR=1.258;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:404,0,343
chr1	12316747	.	GT	G	217.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272e+00;DP=16;ExcessHet=6.9897;FS=2.448;MQ=60.00;MQRankSum=0.00;QD=4.63;ReadPosRankSum=-5.100e-01;SOR=0.204;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,5:16:57:57,0,137
chr1	12339619	rs4845898	A	T	366.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.630e-01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.805;SOR=0.693;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:375,0,477
chr1	12368705	.	GT	G	161.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.74;ReadPosRankSum=0.839;SOR=0.540;VQSLOD=5.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,4:24:32:32,0,449
chr1	12401868	rs28551666	A	C	8849.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590e-01;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=-2.000e-02;SOR=0.725;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3115,276,0
chr1	12418700	rs10864552	T	C	4111.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=2.760;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1042,102,0
chr1	12429284	rs142328809	CTG	C	111.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.95;ReadPosRankSum=0.566;SOR=0.307;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:52:52,0,117
chr1	12567232	rs7554257	A	G	8346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=33.25;SOR=0.733;VQSLOD=4.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3101,291,0
chr1	12628637	rs4240900	G	A	399.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.180;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:139,0,25
chr1	12638964	rs2275875	T	C	4742.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=126;ExcessHet=6.9897;FS=0.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.741;SOR=0.729;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,58:126:99:1391,0,1846
chr1	12639018	rs2275874	C	T	2802.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=131;ExcessHet=3.9794;FS=11.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-2.630e-01;SOR=0.610;VQSLOD=17.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,63:131:99:1598,0,1849
chr1	12639168	rs3128461	A	G	5065.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=138;ExcessHet=6.9897;FS=1.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=1.02;SOR=0.612;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,58:138:99:1544,0,2032
chr1	12639596	rs2358737	C	T	791.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-5.380e-01;SOR=1.241;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:275,0,209
chr1	12776134	rs3010874	C	A	1926.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347e+00;DB;DP=31;ExcessHet=3.9794;FS=1.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=-7.750e-01;SOR=0.990;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:400,0,526
chr1	12776218	rs3000860	A	C	6953.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=100;ExcessHet=3.0103;FS=4.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.29;ReadPosRankSum=1.40;SOR=0.431;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,48:100:99:1239,0,1361
chr1	12776344	rs3000859	A	T	7221.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=143;ExcessHet=3.9794;FS=0.370;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=1.28;SOR=0.728;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,64:143:99:1639,0,1999
chr1	12779560	rs3010876	T	C	11205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=0.805;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2566,258,0
chr1	12779618	rs3010877	T	C	8341.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.282;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1817,186,0
chr1	12785093	rs4361998	T	G	5969.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=80;ExcessHet=3.0103;FS=1.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=0.785;SOR=0.489;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,79:80:99:2556,229,0
chr1	12785494	rs7513079	G	T	6431.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.203;DB;DP=85;ExcessHet=3.0103;FS=5.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=0.387;SOR=0.440;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2628,219,0
chr1	12786070	rs3000930	A	G	1609.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.730e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.57;ReadPosRankSum=0.906;SOR=1.054;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:512,39,0
chr1	12819063	rs3795746	A	T	719.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=12;ExcessHet=3.9794;FS=2.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.83;ReadPosRankSum=2.52;SOR=1.781;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:454,36,0
chr1	12820491	rs3010919	T	G	1509.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.55;DB;DP=10;ExcessHet=3.0103;FS=7.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=1.20;SOR=2.956;VQSLOD=17.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:435,30,0
chr1	12820870	rs1132185	T	C	9562.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.15;DB;DP=118;ExcessHet=3.0103;FS=2.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=-9.800e-02;SOR=0.543;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3759,354,0
chr1	12835605	rs41303869	G	A	219.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.671e+00;DB;DP=31;ExcessHet=3.0103;FS=3.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.07;ReadPosRankSum=-1.650e-01;SOR=0.200;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:228,0,674
chr1	12835868	rs1812242	T	C	10473.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.180e+00;DB;DP=122;ExcessHet=3.0103;FS=9.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.72;ReadPosRankSum=0.572;SOR=0.322;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:122:99:3682,359,0
chr1	12837634	rs848578	T	A	9779.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=166;ExcessHet=3.9794;FS=1.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.50;ReadPosRankSum=1.11;SOR=0.646;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5021,495,0
chr1	12837840	rs848577	G	C	3095.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.850e-01;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=0.487;SOR=0.686;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1461,144,0
chr1	12853975	rs72472661	G	T	817.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712e+00;DB;DP=44;ExcessHet=6.9897;FS=3.000;MQ=51.79;MQRankSum=0.977;NEGATIVE_TRAIN_SITE;QD=6.20;ReadPosRankSum=-7.160e-01;SOR=1.022;VQSLOD=-3.065e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:339,0,827
chr1	12854021	rs140629685	G	T	3630.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.284e+00;DB;DP=73;ExcessHet=6.9897;FS=0.000;MQ=50.41;MQRankSum=-1.550e-01;NEGATIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.151;SOR=0.673;VQSLOD=-3.029e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,30:73:99:0|1:12854021_G_T:1120,0,1715:12854021
chr1	12854022	rs151202400	A	T	3672.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402e+00;DB;DP=73;ExcessHet=6.9897;FS=0.000;MQ=50.50;MQRankSum=-1.550e-01;NEGATIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.196;SOR=0.687;VQSLOD=-3.011e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,30:73:99:0|1:12854021_G_T:1120,0,1715:12854021
chr1	12854041	rs76280430	T	C	3820.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930e-01;DB;DP=81;ExcessHet=6.9897;FS=0.482;MQ=50.78;MQRankSum=-2.001e+00;NEGATIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=1.51;SOR=0.648;VQSLOD=-3.233e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,31:81:99:0|1:12854021_G_T:1113,0,1906:12854021
chr1	12854052	rs78573959	C	T	1497.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050e-01;DB;DP=88;ExcessHet=6.9897;FS=1.800;MQ=51.03;MQRankSum=-3.740e-01;NEGATIVE_TRAIN_SITE;QD=5.51;ReadPosRankSum=1.25;SOR=0.550;VQSLOD=-3.409e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,19:88:99:228,0,2552
chr1	12854090	rs79698223	T	A	2065.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028e+00;DB;DP=110;ExcessHet=6.9897;FS=0.000;MQ=52.63;MQRankSum=-2.804e+00;NEGATIVE_TRAIN_SITE;QD=6.28;ReadPosRankSum=-5.360e-01;SOR=0.678;VQSLOD=-3.603e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:90,20:110:99:0|1:12854090_T_A:513,0,3712:12854090
chr1	12854097	rs76193255	T	C	1951.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692e+00;DB;DP=105;ExcessHet=6.9897;FS=1.700;MQ=52.90;MQRankSum=-3.796e+00;NEGATIVE_TRAIN_SITE;QD=5.99;ReadPosRankSum=-5.400e-01;SOR=0.568;VQSLOD=-3.848e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:89,16:105:99:0|1:12854090_T_A:415,0,3686:12854090
chr1	12854105	rs76648802	A	G	1853.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DB;DP=107;ExcessHet=6.9897;FS=2.434;MQ=52.91;MQRankSum=-3.476e+00;NEGATIVE_TRAIN_SITE;QD=5.67;ReadPosRankSum=-7.050e-01;SOR=0.524;VQSLOD=-3.586e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:92,15:107:99:0|1:12854090_T_A:381,0,3763:12854090
chr1	12854162	rs199893374	C	T	828.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.91;DB;DP=95;ExcessHet=6.9897;FS=8.795;MQ=53.18;MQRankSum=-7.154e+00;QD=2.74;ReadPosRankSum=-1.138e+00;SOR=1.146;VQSLOD=-4.442e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,17:95:99:268,0,2150
chr1	12854414	rs1063769	G	A	767.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.800e-02;DB;DP=152;ExcessHet=3.9794;FS=6.727;MQ=54.96;MQRankSum=-8.777e+00;QD=2.34;ReadPosRankSum=-2.300e-01;SOR=0.932;VQSLOD=-5.101e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:109,43:152:99:714,0,2802
chr1	12854530	rs1063776	C	G	12036.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=57.16;POSITIVE_TRAIN_SITE;QD=32.98;SOR=1.289;VQSLOD=3.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3320,333,0
chr1	12854713	rs11121979	G	T	772.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=59.76;QD=33.97;SOR=4.615;VQSLOD=2.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:328,24,0
chr1	12854842	rs11121980	G	C	295.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=6;ExcessHet=3.9794;FS=4.771;MQ=50.39;MQRankSum=1.96;NEGATIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=1.38;SOR=3.056;VQSLOD=-3.052e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:11:199,0,11
chr1	12855644	rs5003729	A	G	234.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=113;ExcessHet=3.0103;FS=9.215;MQ=49.45;MQRankSum=-4.410e-01;NEGATIVE_TRAIN_SITE;QD=2.07;ReadPosRankSum=-3.249e+00;SOR=2.137;VQSLOD=-4.826e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:101,12:113:99:0|1:12855644_A_G:243,0,5787:12855644
chr1	12855648	rs200816125	A	T	225.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=118;ExcessHet=3.0103;FS=4.077;MQ=49.40;MQRankSum=-1.401e+00;NEGATIVE_TRAIN_SITE;QD=1.91;ReadPosRankSum=-3.059e+00;SOR=1.347;VQSLOD=-3.523e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:104,14:118:99:0|1:12855644_A_G:234,0,5852:12855644
chr1	12855667	rs200190132	A	T	258.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=138;ExcessHet=3.0103;FS=3.022;MQ=49.54;MQRankSum=-2.639e+00;NEGATIVE_TRAIN_SITE;QD=1.87;ReadPosRankSum=-2.587e+00;SOR=0.404;VQSLOD=-3.923e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:114,24:138:99:267,0,3255
chr1	12855835	rs1063795	C	G	21606.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MQ=46.79;POSITIVE_TRAIN_SITE;QD=28.17;SOR=1.087;VQSLOD=-1.746e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,181:181:99:1|1:12855835_C_G:7961,545,0:12855835
chr1	12855844	rs141509525	G	A	97.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e+00;DB;DP=175;ExcessHet=3.0103;FS=3.055;MQ=45.63;MQRankSum=-3.221e+00;QD=0.56;ReadPosRankSum=0.916;SOR=1.060;VQSLOD=-4.094e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:153,22:175:99:106,0,4359
chr1	12855845	rs1063797	G	C	21181.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=46.45;QD=30.53;SOR=1.086;VQSLOD=-3.634e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,174:174:99:1|1:12855835_C_G:7809,530,0:12855835
chr1	12855898	rs76032448	C	T	883.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775e+00;DB;DP=186;ExcessHet=3.0103;FS=7.466;MQ=43.74;MQRankSum=-4.293e+00;QD=4.75;ReadPosRankSum=1.13;SOR=0.871;VQSLOD=-4.271e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:153,33:186:99:892,0,6393
chr1	12855962	rs149187716	C	T	526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=41.39;MQRankSum=-2.788e+00;QD=3.02;ReadPosRankSum=-5.050e-01;SOR=0.724;VQSLOD=-5.060e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,31:174:99:535,0,3910
chr1	12856010	rs61775053	C	G	1639.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120e-01;DB;DP=149;ExcessHet=3.9794;FS=5.525;MQ=41.06;MQRankSum=-2.708e+00;QD=6.50;ReadPosRankSum=3.34;SOR=0.442;VQSLOD=-4.364e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,52:149:99:1077,0,2474
chr1	12856106	rs145309716	A	G	90.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615e+00;DB;DP=53;ExcessHet=3.0103;FS=1.771;MQ=43.61;MQRankSum=-2.350e-01;QD=1.70;ReadPosRankSum=-1.169e+00;SOR=0.335;VQSLOD=-4.787e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,8:53:99:99,0,1469
chr1	12856111	rs61775054	C	T	641.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=51;ExcessHet=6.9897;FS=0.000;MQ=41.89;MQRankSum=-1.239e+00;QD=5.73;ReadPosRankSum=0.568;SOR=0.607;VQSLOD=-4.766e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,6:51:46:46,0,1383
chr1	12884615	rs72550060	C	T	269.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=52.27;MQRankSum=0.967;NEGATIVE_TRAIN_SITE;QD=33.69;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=-2.156e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:18:72,0,18
chr1	12887054	rs3738105	T	C,G	3613.31	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=5.64;DB;DP=60;ExcessHet=3.0103;FS=2.639;MQ=42.48;MQRankSum=0.195;QD=18.44;ReadPosRankSum=3.51;SOR=0.491;VQSLOD=-4.680e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:4,46,10:60:99:1488,119,126,1237,0,1355
chr1	12887549	rs2994114	T	C	32128.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=269;ExcessHet=3.0103;FS=0.000;MQ=50.90;NEGATIVE_TRAIN_SITE;QD=33.61;SOR=0.762;VQSLOD=-7.612e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,269:269:99:8973,807,0
chr1	12887878	rs55743212	T	C	132.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=11;ExcessHet=3.9794;FS=3.961;MQ=56.63;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=4.91;ReadPosRankSum=1.60;SOR=0.078;VQSLOD=-2.655e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:34:34,0,370
chr1	12887932	rs2092146	T	G	253.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=5;ExcessHet=4.7712;FS=3.310;MQ=52.53;MQRankSum=-1.645e+00;NEGATIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=0.405;SOR=0.141;VQSLOD=-1.934e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:75:112,0,75
chr1	12888601	rs113914674	G	GC	6938.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.200e-01;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=58.24;MQRankSum=2.42;QD=33.20;ReadPosRankSum=1.39;SOR=0.612;VQSLOD=0.015;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2230,202,0
chr1	12888706	rs61777005	C	A	2009.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290e+00;DB;DP=52;ExcessHet=6.9897;FS=6.477;MQ=55.61;MQRankSum=-1.230e-01;NEGATIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.390;SOR=0.385;VQSLOD=-1.292e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,20:52:99:434,0,990
chr1	12888752	rs61777006	C	T	1914.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399e+00;DB;DP=45;ExcessHet=6.9897;FS=4.994;MQ=56.92;MQRankSum=-8.380e-01;NEGATIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.952;SOR=0.391;VQSLOD=-1.600e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,19:45:99:457,0,711
chr1	12888795	rs61777007	T	A	1454.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;DB;DP=32;ExcessHet=6.9897;FS=0.826;MQ=54.46;MQRankSum=0.068;NEGATIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-5.850e-01;SOR=0.593;VQSLOD=-2.892e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:352,0,488
chr1	12898378	rs57957396	C	G	1962.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640e+00;DB;DP=37;ExcessHet=1.5490;FS=0.000;MQ=59.90;MQRankSum=-7.710e-01;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=0.511;SOR=0.784;VQSLOD=1.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,22:37:99:651,0,454
chr1	12898445	rs11121996	C	A	5076.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404e+00;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.613;SOR=0.657;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,46:69:99:1250,0,552
chr1	12898472	rs4301642	C	T	9158.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=27.07;SOR=1.534;VQSLOD=4.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2917,249,0
chr1	12898512	rs116549626	G	T	468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.600e-02;DB;DP=100;ExcessHet=3.0103;FS=5.507;MQ=59.66;MQRankSum=-2.298e+00;NEGATIVE_TRAIN_SITE;QD=4.68;ReadPosRankSum=-1.079e+00;SOR=0.469;VQSLOD=-2.298e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:83,17:100:99:0|1:12898512_G_T:477,0,3470:12898512
chr1	12898517	rs72472679	C	G	458.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=104;ExcessHet=3.0103;FS=7.442;MQ=59.67;MQRankSum=-2.365e+00;NEGATIVE_TRAIN_SITE;QD=4.41;ReadPosRankSum=-1.262e+00;SOR=0.838;VQSLOD=-2.303e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:87,17:104:99:0|1:12898512_G_T:467,0,3567:12898512
chr1	12898551	rs117657781	A	G	132.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.74;DB;DP=123;ExcessHet=3.0103;FS=8.426;MQ=59.35;MQRankSum=-2.637e+00;NEGATIVE_TRAIN_SITE;QD=1.08;ReadPosRankSum=-2.880e-01;SOR=1.547;VQSLOD=-2.776e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:110,13:123:99:141,0,2700
chr1	12898584	rs201357393	T	A	137.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=132;ExcessHet=3.0103;FS=8.931;MQ=58.23;MQRankSum=-2.689e+00;NEGATIVE_TRAIN_SITE;QD=1.04;ReadPosRankSum=0.946;SOR=1.964;VQSLOD=-3.078e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:120,12:132:99:0|1:12898584_T_A:146,0,4971:12898584
chr1	12898591	rs375621672	G	T	98.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=136;ExcessHet=3.0103;FS=8.859;MQ=57.64;MQRankSum=-2.979e+00;NEGATIVE_TRAIN_SITE;QD=0.72;ReadPosRankSum=0.798;SOR=1.972;VQSLOD=-3.215e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:124,12:136:99:0|1:12898584_T_A:107,0,4991:12898584
chr1	12898633	rs200228991	G	A	136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=126;ExcessHet=3.0103;FS=11.807;MQ=55.61;MQRankSum=-2.205e+00;NEGATIVE_TRAIN_SITE;QD=1.08;ReadPosRankSum=-1.276e+00;SOR=2.416;VQSLOD=-3.897e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:114,12:126:99:0|1:12898633_G_A:145,0,4493:12898633
chr1	12898654	rs55954336	A	G	7549.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=106;ExcessHet=1.5490;FS=7.193;MQ=53.24;MQRankSum=2.37;NEGATIVE_TRAIN_SITE;QD=34.79;ReadPosRankSum=0.935;SOR=0.143;VQSLOD=-2.645e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,96:106:99:3814,0,131
chr1	12898655	rs200329070	C	T	113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e-01;DB;DP=103;ExcessHet=3.0103;FS=7.277;MQ=54.09;MQRankSum=-2.299e+00;NEGATIVE_TRAIN_SITE;QD=1.10;ReadPosRankSum=-1.081e+00;SOR=1.895;VQSLOD=-3.058e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:93,10:103:99:0|1:12898633_G_A:122,0,4102:12898633
chr1	12898656	rs201392533	T	G	119.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=103;ExcessHet=3.0103;FS=7.277;MQ=54.09;MQRankSum=-2.299e+00;NEGATIVE_TRAIN_SITE;QD=1.16;ReadPosRankSum=-1.086e+00;SOR=1.895;VQSLOD=-3.054e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:93,10:103:99:0|1:12898633_G_A:128,0,4043:12898633
chr1	12898663	rs199560574	G	A	53.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=95;ExcessHet=3.0103;FS=6.335;MQ=53.63;MQRankSum=-2.557e+00;NEGATIVE_TRAIN_SITE;QD=0.56;ReadPosRankSum=0.228;SOR=2.179;VQSLOD=-3.246e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:88,7:95:62:0|1:12898633_G_A:62,0,3794:12898633
chr1	12898673	rs4453052	G	T	12265.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=50.22;NEGATIVE_TRAIN_SITE;QD=32.59;SOR=1.252;VQSLOD=-1.704e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:4004,277,0
chr1	12907122	rs5027833	C	T	120.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=49.37;MQRankSum=-1.383e+00;QD=12.01;ReadPosRankSum=0.00;SOR=0.412;VQSLOD=-3.151e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:59:59,0,69
chr1	12907136	rs5027835	A	G	123.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=47.15;MQRankSum=-2.189e+00;QD=17.64;ReadPosRankSum=-6.520e-01;SOR=0.188;VQSLOD=-3.018e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:131,0,108
chr1	12907148	rs200416167	C	G	144.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=43.22;MQRankSum=-2.238e+00;QD=12.02;ReadPosRankSum=1.28;SOR=0.446;VQSLOD=-4.083e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:153,0,272
chr1	12907169	rs5027836	A	G	571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=47.23;MQRankSum=-2.738e+00;QD=10.79;ReadPosRankSum=-1.688e+00;SOR=0.246;VQSLOD=-3.584e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:190,0,406
chr1	12907199	rs5027837	T	A	1126.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=30;ExcessHet=6.9897;FS=5.963;MQ=52.87;MQRankSum=-1.763e+00;NEGATIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.091;SOR=1.940;VQSLOD=-2.146e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,9:30:99:281,0,577
chr1	12907212	rs5027838	T	A	1501.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251e+00;DB;DP=30;ExcessHet=6.9897;FS=10.283;MQ=53.65;MQRankSum=-1.763e+00;NEGATIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-7.490e-01;SOR=2.078;VQSLOD=-2.638e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,9:30:99:279,0,749
chr1	12907282	rs139731855	G	C	4471.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298e+00;DB;DP=70;ExcessHet=6.9897;FS=5.158;MQ=57.34;MQRankSum=-2.263e+00;NEGATIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=1.37;SOR=0.453;VQSLOD=-1.865e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,18:70:99:0|1:12907282_G_C:599,0,2115:12907282
chr1	12907284	rs149796618	T	C	4501.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=69;ExcessHet=6.9897;FS=4.299;MQ=57.40;MQRankSum=-2.451e+00;NEGATIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=1.30;SOR=0.482;VQSLOD=-2.236e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,18:69:99:0|1:12907282_G_C:599,0,2115:12907282
chr1	12907285	rs148930640	G	C	4501.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270e+00;DB;DP=69;ExcessHet=6.9897;FS=3.500;MQ=57.38;MQRankSum=-2.451e+00;NEGATIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=1.06;SOR=0.512;VQSLOD=-2.312e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,18:69:99:0|1:12907282_G_C:599,0,2115:12907282
chr1	12907350	rs2359486	C	T	3532.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212e+00;DB;DP=111;ExcessHet=6.9897;FS=9.772;MQ=59.12;MQRankSum=-3.484e+00;NEGATIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=-1.970e-01;SOR=0.585;VQSLOD=-2.290e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:98,13:111:99:0|1:12907350_C_T:208,0,4076:12907350
chr1	12907351	rs2359485	A	G	3573.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.827;DB;DP=111;ExcessHet=6.9897;FS=9.960;MQ=59.12;MQRankSum=-3.583e+00;NEGATIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-3.190e-01;SOR=0.617;VQSLOD=-2.329e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:98,13:111:99:0|1:12907350_C_T:208,0,4076:12907350
chr1	12907370	rs2076063	A	T	2517.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=129;ExcessHet=6.9897;FS=17.411;MQ=58.64;MQRankSum=-3.168e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.68;ReadPosRankSum=-4.270e-01;SOR=1.410;VQSLOD=-1.670e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:119,10:129:99:0|1:12907370_A_T:123,0,4961:12907370
chr1	12907379	rs74055698	T	C	5803.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=141;ExcessHet=6.9897;FS=8.177;MQ=57.72;MQRankSum=-9.990e-01;NEGATIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.467;SOR=0.609;VQSLOD=-1.455e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,51:141:99:1330,0,2342
chr1	12907385	rs150590256	G	A	2035.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=144;ExcessHet=6.9897;FS=18.143;MQ=57.33;MQRankSum=-8.790e-01;NEGATIVE_TRAIN_SITE;QD=4.40;ReadPosRankSum=-2.530e-01;SOR=1.563;VQSLOD=-3.308e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:136,8:144:1:0|1:12907370_A_T:1,0,5806:12907370
chr1	12907449	rs78163065	C	G	1218.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188e+00;DB;DP=187;ExcessHet=3.0103;FS=1.892;MQ=51.82;MQRankSum=-6.310e-01;NEGATIVE_TRAIN_SITE;QD=6.51;ReadPosRankSum=-7.460e-01;SOR=0.559;VQSLOD=-3.326e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,64:187:99:1227,0,3361
chr1	12907496	rs138700801	T	C	1181.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DB;DP=172;ExcessHet=3.0103;FS=1.307;MQ=49.54;MQRankSum=-2.658e+00;NEGATIVE_TRAIN_SITE;QD=6.87;ReadPosRankSum=-7.000e-03;SOR=0.853;VQSLOD=-3.634e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,52:172:99:1190,0,3365
chr1	12907507	rs12409975	C	T	3148.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684e+00;DB;DP=165;ExcessHet=6.9897;FS=8.928;MQ=48.76;MQRankSum=-4.525e+00;QD=7.21;ReadPosRankSum=1.89;SOR=1.090;VQSLOD=-3.767e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:110,55:165:99:0|1:12907507_C_T:1965,0,5107:12907507
chr1	12907508	rs138145027	T	C	3154.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=166;ExcessHet=6.9897;FS=8.928;MQ=48.76;MQRankSum=-4.525e+00;QD=7.22;ReadPosRankSum=1.92;SOR=1.090;VQSLOD=-3.775e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:111,55:166:99:0|1:12907507_C_T:1965,0,5107:12907507
chr1	12907533	rs141872266	T	C	1070.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.150e-01;DB;DP=165;ExcessHet=3.0103;FS=5.372;MQ=50.81;MQRankSum=-3.203e+00;NEGATIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=0.553;SOR=0.377;VQSLOD=-2.172e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,45:165:99:1079,0,3855
chr1	12907633	rs75660350	G	A	1929.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346e+00;DB;DP=267;ExcessHet=3.0103;FS=3.741;MQ=59.62;MQRankSum=-4.404e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=-6.780e-01;SOR=0.928;VQSLOD=-1.959e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:183,84:267:99:1938,0,5223
chr1	12907762	rs57026768	T	C	3769.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e+00;DB;DP=458;ExcessHet=3.0103;FS=5.866;MQ=57.08;MQRankSum=-5.473e+00;QD=8.23;ReadPosRankSum=-6.290e-01;SOR=0.837;VQSLOD=-2.894e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:336,122:458:99:3778,0,13322
chr1	12907885	rs848418	T	C	14933.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597e+00;DB;DP=466;ExcessHet=6.9897;FS=9.911;MQ=58.24;MQRankSum=2.43;NEGATIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-1.871e+00;SOR=0.308;VQSLOD=-1.955e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:205,261:466:99:7164,0,5361
chr1	12908080	rs41279490	C	T	1705.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197e+00;DB;DP=759;ExcessHet=3.0103;FS=3.533;MQ=54.48;MQRankSum=-2.690e+00;NEGATIVE_TRAIN_SITE;QD=2.25;ReadPosRankSum=-5.440e-01;SOR=1.008;VQSLOD=-3.142e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:634,125:759:99:1714,0,17693
chr1	12908130	rs41279492	C	T	1372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DB;DP=688;ExcessHet=3.0103;FS=0.000;MQ=53.08;MQRankSum=-1.539e+00;NEGATIVE_TRAIN_SITE;QD=1.99;ReadPosRankSum=0.030;SOR=0.743;VQSLOD=-3.650e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:572,116:688:99:1381,0,15064
chr1	12908236	rs1736809	G	T	15660.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772e+00;DB;DP=233;ExcessHet=6.9897;FS=5.573;MQ=44.31;MQRankSum=-6.059e+00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=-3.130e-01;SOR=1.213;VQSLOD=-1.900e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,117:233:99:3960,0,3171
chr1	12908278	rs3860363	C	A	5615.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.474e+00;DB;DP=125;ExcessHet=6.9897;FS=0.000;MQ=46.22;MQRankSum=-3.700e-01;QD=12.48;ReadPosRankSum=0.056;SOR=0.506;VQSLOD=-3.702e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,78:125:99:2435,0,1419
chr1	12908333	rs61775391	T	C	4572.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.702e+00;DB;DP=45;ExcessHet=6.9897;FS=3.673;MQ=53.04;MQRankSum=-7.200e-02;NEGATIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=1.90;SOR=2.103;VQSLOD=-1.782e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,21:45:99:0|1:12908333_T_C:768,0,851:12908333
chr1	12908349	rs142028100	A	AT	4051.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=55.18;MQRankSum=-1.826e+00;QD=25.65;ReadPosRankSum=0.675;SOR=1.290;VQSLOD=0.148;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,17:31:99:0|1:12908333_T_C:669,0,569:12908333
chr1	12908365	rs6669777	A	C	52.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=56.15;MQRankSum=-1.342e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=2.27;ReadPosRankSum=-6.850e-01;SOR=0.036;VQSLOD=-1.455e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,3:23:61:61,0,841
chr1	12908375	rs61775392	T	C	2755.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=57.47;MQRankSum=-1.909e+00;NEGATIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-1.512e+00;SOR=1.445;VQSLOD=-1.724e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,11:18:99:0|1:12908375_T_C:415,0,226:12908375
chr1	12908384	rs143606605	G	GA	1908.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=57.16;MQRankSum=-1.812e+00;QD=21.69;ReadPosRankSum=-1.116e+00;SOR=0.941;VQSLOD=0.320;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:12908375_T_C:265,0,238:12908375
chr1	12918535	rs148260178	A	C	59.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.99;ReadPosRankSum=-1.645e+00;SOR=0.446;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,78
chr1	12918819	rs9659511	C	T	920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882e+00;DB;DP=120;ExcessHet=3.0103;FS=1.525;MQ=59.56;MQRankSum=-3.402e+00;NEGATIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=-1.870e-01;SOR=0.546;VQSLOD=-1.732e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,42:120:99:929,0,2270
chr1	12918891	rs77229081	A	C	1043.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=124;ExcessHet=3.0103;FS=0.713;MQ=59.58;MQRankSum=-3.550e+00;NEGATIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=-6.720e-01;SOR=0.816;VQSLOD=-1.832e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:83,41:124:99:1052,0,2313
chr1	12919064	rs3204790	T	G	1539.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.330e-01;DB;DP=206;ExcessHet=3.0103;FS=2.496;MQ=60.00;MQRankSum=0.00;QD=7.47;ReadPosRankSum=-8.380e-01;SOR=0.876;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:132,74:206:99:1548,0,3368
chr1	12919111	rs9728577	G	A	1355.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-02;DB;DP=154;ExcessHet=3.0103;FS=0.687;MQ=59.77;MQRankSum=-4.460e-01;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=1.85;SOR=0.792;VQSLOD=1.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:101,53:154:99:1364,0,2854
chr1	12919173	rs9308464	A	G	687.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937e+00;DB;DP=67;ExcessHet=3.0103;FS=1.389;MQ=59.26;MQRankSum=-1.142e+00;QD=10.26;ReadPosRankSum=-1.216e+00;SOR=0.416;VQSLOD=-9.181e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,23:67:99:696,0,1500
chr1	12919350	rs61775399	A	G	455.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.04;MQRankSum=3.48;NEGATIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=0.792;SOR=0.693;VQSLOD=-8.386e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:99:102,0,230
chr1	12919353	rs2179186	G	T	190.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=10;ExcessHet=6.9897;FS=11.604;MQ=59.08;MQRankSum=0.126;NEGATIVE_TRAIN_SITE;QD=7.95;ReadPosRankSum=0.126;SOR=3.390;VQSLOD=-2.872e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,1:10:12:0|1:12919353_G_T:12,0,417:12919353
chr1	12919360	rs111283876	A	T	225.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=12;ExcessHet=6.9897;FS=11.046;MQ=58.99;MQRankSum=-4.800e-02;NEGATIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=-6.460e-01;SOR=3.239;VQSLOD=-2.736e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,1:12:6:0|1:12919353_G_T:6,0,501:12919353
chr1	12919410	rs201173046	G	T	86.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=57.87;MQRankSum=-3.048e+00;NEGATIVE_TRAIN_SITE;QD=3.32;ReadPosRankSum=1.21;SOR=0.693;VQSLOD=-2.384e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,4:26:95:95,0,853
chr1	12919422	rs74056157	T	C	991.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=57.09;MQRankSum=-2.381e+00;NEGATIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=2.66;SOR=0.862;VQSLOD=-2.765e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:363,0,612
chr1	12919423	rs74056158	G	A	790.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578e+00;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=57.12;MQRankSum=-2.381e+00;NEGATIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=1.83;SOR=0.593;VQSLOD=-2.501e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,6:29:99:162,0,935
chr1	12919459	rs139219724	G	T	517.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163e+00;DB;DP=48;ExcessHet=3.9794;FS=2.553;MQ=56.84;MQRankSum=-2.791e+00;NEGATIVE_TRAIN_SITE;QD=5.28;ReadPosRankSum=1.36;SOR=0.331;VQSLOD=-3.162e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,12:48:99:366,0,1295
chr1	12919468	rs9728931	G	A	341.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135e+00;DB;DP=55;ExcessHet=3.0103;FS=9.925;MQ=55.59;MQRankSum=-2.686e+00;NEGATIVE_TRAIN_SITE;QD=6.20;ReadPosRankSum=0.195;SOR=0.117;VQSLOD=-2.110e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,16:55:99:350,0,1397
chr1	12919482	rs76110183	G	C	536.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027e+00;DB;DP=67;ExcessHet=6.9897;FS=5.205;MQ=57.20;MQRankSum=-4.666e+00;NEGATIVE_TRAIN_SITE;QD=2.74;ReadPosRankSum=0.198;SOR=0.351;VQSLOD=-3.186e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,13:67:99:277,0,1675
chr1	12919505	rs76317893	G	T	679.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813e+00;DB;DP=84;ExcessHet=6.9897;FS=3.908;MQ=57.51;MQRankSum=-5.018e+00;NEGATIVE_TRAIN_SITE;QD=3.02;ReadPosRankSum=-1.087e+00;SOR=0.387;VQSLOD=-3.633e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:72,12:84:99:0|1:12919505_G_T:319,0,3048:12919505
chr1	12919506	rs200021090	A	T	676.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.380e-01;DB;DP=85;ExcessHet=6.9897;FS=5.258;MQ=57.52;MQRankSum=-4.749e+00;NEGATIVE_TRAIN_SITE;QD=3.01;ReadPosRankSum=-1.078e+00;SOR=0.349;VQSLOD=-3.154e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,12:85:99:0|1:12919505_G_T:319,0,3048:12919505
chr1	12919511	rs1856641	C	A	789.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110e-01;DB;DP=90;ExcessHet=6.9897;FS=14.607;MQ=57.47;MQRankSum=-6.352e+00;QD=3.32;ReadPosRankSum=-9.970e-01;SOR=0.222;VQSLOD=-4.192e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,25:90:99:496,0,1473
chr1	12919872	rs3204798	T	G	1457.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=147;ExcessHet=3.0103;FS=6.595;MQ=59.66;MQRankSum=-1.588e+00;NEGATIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=-1.340e+00;SOR=1.272;VQSLOD=-1.843e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:93,54:147:99:1466,0,2614
chr1	12919891	rs75411676	G	T	1242.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.629e+00;DB;DP=155;ExcessHet=3.0103;FS=6.334;MQ=60.00;MQRankSum=0.00;QD=8.01;ReadPosRankSum=0.404;SOR=1.244;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,54:155:99:1251,0,2788
chr1	12919934	rs3204805	A	G	1475.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=1.10;SOR=0.720;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,66:186:99:1484,0,3128
chr1	12920132	rs58524511	A	G	499.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;DB;DP=39;ExcessHet=3.0103;FS=1.890;MQ=57.33;MQRankSum=-4.751e+00;NEGATIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.098e+00;SOR=0.241;VQSLOD=-2.618e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,14:39:99:0|1:12920132_A_G:508,0,966:12920132
chr1	12920191	rs57640138	T	C	126.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=55.05;MQRankSum=-3.608e+00;NEGATIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=1.37;SOR=0.602;VQSLOD=-3.989e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,4:15:99:0|1:12920191_T_C:135,0,441:12920191
chr1	12920200	rs60849423	G	A	135.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=53.75;MQRankSum=-3.087e+00;NEGATIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.657;SOR=0.941;VQSLOD=-3.280e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:12920191_T_C:144,0,324:12920191
chr1	12920241	rs60887327	A	G	59.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=51.89;MQRankSum=-1.645e+00;NEGATIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-1.645e+00;SOR=1.609;VQSLOD=-2.210e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,109
chr1	12920330	rs58607521	A	C	177.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=51.09;MQRankSum=0.272;NEGATIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=-4.140e-01;SOR=0.330;VQSLOD=-2.772e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:86:186,0,86
chr1	12920560	rs60803192	T	C	393.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=50.60;MQRankSum=-3.816e+00;NEGATIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-1.830e-01;SOR=0.879;VQSLOD=-3.539e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:402,0,476
chr1	12920580	rs9726436	C	G	333.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=53.31;MQRankSum=-4.901e+00;NEGATIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-1.568e+00;SOR=0.527;VQSLOD=-3.952e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:342,0,372
chr1	12920594	rs144006670	C	T	256.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DB;DP=21;ExcessHet=3.0103;FS=8.822;MQ=54.70;MQRankSum=-4.277e+00;NEGATIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-7.250e-01;SOR=3.056;VQSLOD=-3.552e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:265,0,355
chr1	12920622	rs140909199	C	T	147.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=55.27;MQRankSum=-3.518e+00;NEGATIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=0.682;SOR=1.445;VQSLOD=-2.844e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:156,0,309
chr1	12920946	rs200771181	A	G	109.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=57.25;MQRankSum=-2.237e+00;NEGATIVE_TRAIN_SITE;QD=4.05;ReadPosRankSum=-1.050e+00;SOR=0.527;VQSLOD=-2.391e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,6:27:99:118,0,674
chr1	12920987	rs72472701	G	C	76.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-01;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=57.84;MQRankSum=-1.513e+00;NEGATIVE_TRAIN_SITE;QD=1.77;ReadPosRankSum=2.00;SOR=0.357;VQSLOD=-2.329e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,6:43:85:85,0,1196
chr1	12921127	rs12139549	A	G	2867.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=132;ExcessHet=3.9794;FS=0.953;MQ=59.19;MQRankSum=-1.067e+00;QD=10.50;ReadPosRankSum=-6.830e-01;SOR=0.763;VQSLOD=-8.262e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:88,44:132:99:1031,0,2268
chr1	12921332	rs17039307	T	C	5263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=185;ExcessHet=3.9794;FS=9.041;MQ=58.06;MQRankSum=-4.605e+00;NEGATIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.544;SOR=0.867;VQSLOD=-2.326e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:156,29:185:99:0|1:12921332_T_C:748,0,9282:12921332
chr1	12921333	rs56145411	G	A	2784.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.160e-01;DB;DP=184;ExcessHet=3.9794;FS=0.000;MQ=58.01;MQRankSum=0.900;NEGATIVE_TRAIN_SITE;QD=7.05;ReadPosRankSum=2.35;SOR=0.679;VQSLOD=-1.541e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:155,29:184:99:0|1:12921332_T_C:748,0,9282:12921332
chr1	12939495	rs150289150	A	T	1624.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.480e-01;DB;DP=283;ExcessHet=3.0103;FS=6.326;MQ=46.16;MQRankSum=-2.852e+00;QD=5.74;ReadPosRankSum=1.51;SOR=0.415;VQSLOD=-2.805e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:202,81:283:99:1633,0,5053
chr1	12939535	rs72474509	C	T	1242.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.770e-01;DB;DP=314;ExcessHet=3.0103;FS=4.437;MQ=48.85;MQRankSum=-4.791e+00;QD=3.96;ReadPosRankSum=1.92;SOR=0.977;VQSLOD=-3.780e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:236,78:314:99:1251,0,6055
chr1	12940117	rs28459245	C	G	456.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DB;DP=10;ExcessHet=6.9897;FS=3.590;MQ=49.72;MQRankSum=-2.119e+00;NEGATIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.235;SOR=0.127;VQSLOD=-2.068e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:62:62,0,273
chr1	12942306	rs2994080	C	T	3846.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.854e+00;DB;DP=206;ExcessHet=6.9897;FS=9.659;MQ=41.72;MQRankSum=0.041;QD=5.97;ReadPosRankSum=1.77;SOR=0.272;VQSLOD=-4.173e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:182,24:206:14:14,0,7149
chr1	12942350	rs200222700	C	G	419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.024e+00;DB;DP=119;ExcessHet=3.0103;FS=1.422;MQ=45.56;MQRankSum=-2.925e+00;QD=3.52;ReadPosRankSum=-2.860e-01;SOR=0.382;VQSLOD=-4.123e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:101,18:119:99:0|1:12942350_C_G:428,0,3973:12942350
chr1	12942367	rs201439849	C	G	446.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.045e+00;DB;DP=102;ExcessHet=3.0103;FS=1.643;MQ=47.22;MQRankSum=-3.646e+00;QD=4.38;ReadPosRankSum=-7.770e-01;SOR=1.047;VQSLOD=-4.047e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:85,17:102:99:0|1:12942350_C_G:455,0,3474:12942350
chr1	12942378	rs4503361	T	C	377.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.23;DB;DP=82;ExcessHet=3.0103;FS=4.688;MQ=48.39;MQRankSum=-3.257e+00;QD=4.60;ReadPosRankSum=-3.510e-01;SOR=1.775;VQSLOD=-3.265e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,14:82:99:386,0,2565
chr1	12942384	rs28580205	T	C	147.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.22;DB;DP=79;ExcessHet=3.9794;FS=0.000;MQ=47.91;MQRankSum=0.640;QD=0.96;ReadPosRankSum=2.01;SOR=0.520;VQSLOD=-4.173e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,8:79:41:41,0,2796
chr1	12942392	rs202116351	G	C	315.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.042e+00;DB;DP=65;ExcessHet=3.9794;FS=16.564;MQ=47.65;MQRankSum=-6.490e-01;QD=2.41;ReadPosRankSum=0.465;SOR=0.042;VQSLOD=-4.173e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,15:65:99:191,0,2012
chr1	12942399	rs61781965	A	G	1833.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.43;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=47.47;MQRankSum=2.06;QD=15.03;ReadPosRankSum=0.282;SOR=0.765;VQSLOD=-4.030e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:850,0,1261
chr1	12942414	rs28438506	G	T	2146.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=45;ExcessHet=6.9897;FS=1.618;MQ=49.54;MQRankSum=-3.271e+00;NEGATIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-7.120e-01;SOR=0.383;VQSLOD=-3.286e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,14:45:99:453,0,1166
chr1	12942440	rs201241704	C	G	111.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.391e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=49.75;MQRankSum=-1.160e+00;NEGATIVE_TRAIN_SITE;QD=4.12;ReadPosRankSum=-4.380e-01;SOR=0.368;VQSLOD=-3.545e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,6:27:99:120,0,866
chr1	12942446	rs2982074	G	C	607.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=51.99;MQRankSum=-2.420e+00;NEGATIVE_TRAIN_SITE;QD=7.41;ReadPosRankSum=-7.090e-01;SOR=0.272;VQSLOD=-3.274e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,5:25:99:129,0,732
chr1	12942710	rs200968474	G	C	184.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=45.89;MQRankSum=1.65;QD=18.43;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=-4.141e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:12942710_G_C:120,0,122:12942710
chr1	12942713	rs4345814	C	G	184.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=45.89;MQRankSum=1.65;QD=18.43;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=-4.140e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:12942710_G_C:120,0,122:12942710
chr1	12942730	rs140635657	A	G	132.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=47.15;MQRankSum=1.28;QD=11.04;ReadPosRankSum=1.28;SOR=0.368;VQSLOD=-3.717e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:73:73,0,94
chr1	12942862	rs61778465	G	C	3148.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=55.79;MQRankSum=-4.037e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.46;ReadPosRankSum=0.574;SOR=0.976;VQSLOD=-1.177e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1067,87,0
chr1	12955035	.	G	A	98.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684e+00;DP=34;ExcessHet=4.7712;FS=3.997;MQ=40.66;MQRankSum=-2.350e+00;QD=0.96;ReadPosRankSum=2.49;SOR=0.311;VQSLOD=-4.417e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,7:34:89:89,0,820
chr1	12955054	.	G	A	380.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;DP=23;ExcessHet=4.7712;FS=1.267;MQ=40.98;MQRankSum=-1.984e+00;QD=4.88;ReadPosRankSum=0.602;SOR=0.374;VQSLOD=-4.795e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,7:23:99:0|1:12955054_G_A:246,0,799:12955054
chr1	12955055	.	C	G	383.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129e+00;DP=23;ExcessHet=4.7712;FS=2.719;MQ=41.28;MQRankSum=-2.033e+00;QD=4.86;ReadPosRankSum=0.535;SOR=0.361;VQSLOD=-4.401e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,7:23:99:0|1:12955054_G_A:246,0,799:12955054
chr1	12955080	.	G	A	124.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e-01;DP=12;ExcessHet=4.7712;FS=4.919;MQ=41.71;MQRankSum=-5.160e-01;QD=2.66;ReadPosRankSum=-1.509e+00;SOR=0.136;VQSLOD=-3.604e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:87:87,0,254
chr1	12979729	rs146836223	G	A	1799.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DB;DP=133;ExcessHet=3.9794;FS=3.874;MQ=43.46;MQRankSum=-2.750e+00;QD=7.59;ReadPosRankSum=1.87;SOR=0.489;VQSLOD=-3.684e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,30:133:99:497,0,2659
chr1	12979845	rs142026718	T	C	1534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=128;ExcessHet=3.9794;FS=3.168;MQ=39.52;MQRankSum=-2.304e+00;QD=6.31;ReadPosRankSum=2.22;SOR=0.510;VQSLOD=-4.923e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,34:128:99:631,0,2470
chr1	12987614	rs147031341	A	G	7059.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DB;DP=161;ExcessHet=6.9897;FS=1.106;MQ=39.85;MQRankSum=-3.863e+00;QD=13.66;ReadPosRankSum=-2.690e-01;SOR=0.773;VQSLOD=-5.000e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,83:161:99:1929,0,1700
chr1	13001312	rs76131424	C	G	10267.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=338;ExcessHet=6.9897;FS=0.000;MQ=43.74;MQRankSum=0.955;QD=10.10;ReadPosRankSum=0.688;SOR=0.683;VQSLOD=-4.621e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:188,150:338:99:3195,0,4221
chr1	13052589	rs71225489	A	T	683.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=44.58;MQRankSum=-2.940e+00;QD=19.00;ReadPosRankSum=0.368;SOR=0.927;VQSLOD=-3.705e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:17:195,0,17
chr1	13052789	rs61780142	G	A	2137.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678e+00;DB;DP=183;ExcessHet=3.9794;FS=0.638;MQ=56.04;MQRankSum=-1.230e+00;NEGATIVE_TRAIN_SITE;QD=4.85;ReadPosRankSum=0.330;SOR=0.757;VQSLOD=-3.345e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,50:183:99:998,0,3772
chr1	13052871	rs79792138	C	T	1607.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.161e+00;DB;DP=226;ExcessHet=3.9794;FS=1.336;MQ=54.10;MQRankSum=-9.010e-01;NEGATIVE_TRAIN_SITE;QD=3.17;ReadPosRankSum=-5.750e-01;SOR=0.778;VQSLOD=-3.520e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,60:226:99:896,0,5820
chr1	13052907	rs72474524	T	C	9224.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.856e+00;DB;DP=173;ExcessHet=6.9897;FS=9.400;MQ=52.72;MQRankSum=-2.585e+00;NEGATIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-8.670e-01;SOR=1.242;VQSLOD=-2.212e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,92:173:99:2800,0,2052
chr1	13141835	rs79437155	C	T	2535.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.180e-01;DB;DP=46;ExcessHet=3.9794;FS=4.918;MQ=42.09;MQRankSum=2.52;QD=25.36;ReadPosRankSum=0.462;SOR=1.602;VQSLOD=-4.793e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,28:46:99:731,0,492
chr1	13172124	rs150686130	C	G	1987.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;DB;DP=124;ExcessHet=3.9794;FS=5.839;MQ=52.10;MQRankSum=0.356;NEGATIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=0.724;SOR=0.566;VQSLOD=-1.521e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,40:124:99:882,0,2383
chr1	13172219	rs202058446	T	C	883.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=123;ExcessHet=3.0103;FS=2.552;MQ=52.52;MQRankSum=-1.600e-01;NEGATIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=-1.418e+00;SOR=0.752;VQSLOD=-3.254e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,37:123:99:892,0,2298
chr1	13172272	rs201320809	C	T	866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.736e+00;DB;DP=122;ExcessHet=3.0103;FS=7.727;MQ=52.88;MQRankSum=-4.119e+00;NEGATIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=1.58;SOR=1.003;VQSLOD=-2.827e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,37:122:99:875,0,2551
chr1	13172307	rs200021073	A	G	1014.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139e+00;DB;DP=136;ExcessHet=3.0103;FS=0.663;MQ=52.05;MQRankSum=-5.542e+00;QD=7.46;ReadPosRankSum=-6.280e-01;SOR=0.671;VQSLOD=-4.486e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,49:136:99:1023,0,2288
chr1	13172464	rs200271995	A	G	378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DB;DP=53;ExcessHet=3.0103;FS=1.367;MQ=46.26;MQRankSum=-5.196e+00;QD=7.14;ReadPosRankSum=0.229;SOR=1.027;VQSLOD=-4.376e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,17:53:99:387,0,1064
chr1	13172519	rs367949395	A	G	298.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.02;DB;DP=28;ExcessHet=3.0103;FS=2.755;MQ=51.07;MQRankSum=-4.571e+00;NEGATIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.074;SOR=1.877;VQSLOD=-2.709e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,9:28:99:0|1:13172519_A_G:307,0,1077:13172519
chr1	13172527	rs371976721	G	A	273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040e-01;DB;DP=25;ExcessHet=3.0103;FS=2.782;MQ=51.03;MQRankSum=-4.261e+00;NEGATIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-2.040e-01;SOR=1.911;VQSLOD=-2.607e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,8:25:99:0|1:13172519_A_G:282,0,1045:13172519
chr1	13182792	rs115118968	A	T	328.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=7;ExcessHet=6.9897;FS=8.073;MQ=58.19;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-1.080e-01;SOR=0.036;VQSLOD=-1.468e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:13182792_A_T:114,0,159:13182792
chr1	13182798	rs77972688	G	A	403.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=8;ExcessHet=6.9897;FS=12.825;MQ=57.87;MQRankSum=-9.080e-01;NEGATIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-1.350e-01;SOR=0.016;VQSLOD=-1.796e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:13182792_A_T:153,0,198:13182792
chr1	13182800	rs78005464	T	C	400.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=9;ExcessHet=6.9897;FS=12.486;MQ=58.03;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-5.980e-01;SOR=0.017;VQSLOD=-1.820e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:13182792_A_T:153,0,198:13182792
chr1	13182801	rs75601144	G	A	400.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=9;ExcessHet=6.9897;FS=12.979;MQ=58.10;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.00;SOR=0.016;VQSLOD=-1.826e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:13182792_A_T:153,0,198:13182792
chr1	13182805	rs75270491	T	A	442.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e+00;DB;DP=9;ExcessHet=6.9897;FS=12.203;MQ=58.17;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=-5.660e-01;SOR=0.019;VQSLOD=-1.784e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:13182792_A_T:153,0,198:13182792
chr1	13182821	rs79072930	G	A	461.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372e+00;DB;DP=9;ExcessHet=6.9897;FS=13.206;MQ=58.94;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.231;SOR=0.016;VQSLOD=-1.849e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:13182821_G_A:153,0,198:13182821
chr1	13182828	rs76385169	C	T	461.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=6.9897;FS=13.206;MQ=58.94;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.936;SOR=0.016;VQSLOD=-1.881e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:13182821_G_A:153,0,198:13182821
chr1	13182829	rs28610356	A	G	1083.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.882;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=58.97;MQRankSum=-2.530e-01;NEGATIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=-1.501e+00;SOR=0.859;VQSLOD=-7.763e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:358,27,0
chr1	13182899	rs28537666	A	G	834.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=21;ExcessHet=6.9897;FS=1.794;MQ=54.55;MQRankSum=0.747;NEGATIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.661;SOR=0.276;VQSLOD=-2.604e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,4:21:99:115,0,543
chr1	13183439	rs28713604	T	C	55574.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.21;DB;DP=563;ExcessHet=3.9794;FS=0.785;MQ=58.04;MQRankSum=-4.820e+00;NEGATIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=0.552;SOR=0.541;VQSLOD=-2.063e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,563:563:99:17731,1698,0
chr1	13183511	rs72864546	T	C	37099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=531;ExcessHet=6.9897;FS=7.036;MQ=56.34;MQRankSum=-1.011e+01;QD=19.79;ReadPosRankSum=-1.341e+00;SOR=1.172;VQSLOD=-3.950e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:298,233:531:99:0|1:13183511_T_C:8314,0,11506:13183511
chr1	13183528	rs76937665	A	C	32180.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.95;DB;DP=474;ExcessHet=6.9897;FS=10.768;MQ=56.01;MQRankSum=-1.070e+01;QD=19.79;ReadPosRankSum=-1.806e+00;SOR=1.383;VQSLOD=-4.503e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:286,188:474:99:0|1:13183511_T_C:7227,0,11648:13183511
chr1	13183532	rs77505369	C	T	30093.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.640e-01;DB;DP=459;ExcessHet=6.9897;FS=12.234;MQ=55.96;MQRankSum=-1.072e+01;QD=19.10;ReadPosRankSum=-2.137e+00;SOR=1.429;VQSLOD=-4.787e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:284,175:459:99:0|1:13183511_T_C:6610,0,11487:13183511
chr1	13183533	rs77556803	C	T	30036.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.865e+00;DB;DP=456;ExcessHet=6.9897;FS=13.686;MQ=55.94;MQRankSum=-1.089e+01;QD=19.22;ReadPosRankSum=-1.889e+00;SOR=1.440;VQSLOD=-5.020e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:283,173:456:99:0|1:13183511_T_C:6610,0,11487:13183511
chr1	13183973	rs3929664	G	A	3711.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.840e-01;DB;DP=93;ExcessHet=6.9897;FS=10.540;MQ=46.56;MQRankSum=-3.683e+00;QD=11.49;ReadPosRankSum=0.490;SOR=1.275;VQSLOD=-3.984e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,63:93:99:1853,0,1072
chr1	13219736	.	AT	A	834.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DP=11;ExcessHet=3.0103;FS=4.253;MQ=59.74;MQRankSum=0.00;QD=13.04;ReadPosRankSum=-8.300e-01;SOR=2.737;VQSLOD=4.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:11:20:70,0,20
chr1	13365649	.	C	T	115.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DP=3;ExcessHet=3.9794;FS=0.000;MQ=40.07;MQRankSum=-4.310e-01;QD=9.63;ReadPosRankSum=0.992;SOR=0.446;VQSLOD=-5.089e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:68,0,34
chr1	13448283	rs80327699	A	G	7663.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.61;DB;DP=93;ExcessHet=3.0103;FS=6.068;MQ=38.70;MQRankSum=-4.607e+00;QD=19.60;ReadPosRankSum=0.124;SOR=1.061;VQSLOD=-5.106e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2552,279,0
chr1	13802224	rs3795750	G	A	1286.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.000e+00;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=-4.380e-01;SOR=0.770;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:824,72,0
chr1	13802325	rs3013105	T	C	3161.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.433;DB;DP=55;ExcessHet=3.9794;FS=0.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=1.58;SOR=0.624;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1666,126,0
chr1	13802437	rs3013106	G	A	4021.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=112;ExcessHet=6.9897;FS=1.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.376;SOR=0.812;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,54:112:99:1273,0,1323
chr1	13802722	rs70981221	GA	G	66.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.850e-01;DB;DP=27;ExcessHet=3.0103;FS=10.135;MQ=59.95;MQRankSum=0.00;QD=3.01;ReadPosRankSum=1.61;SOR=0.078;VQSLOD=1.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,6:27:75:75,0,411
chr1	13802818	rs2924855	T	G	500.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.80;ReadPosRankSum=-7.230e-01;SOR=0.560;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:250,21,0
chr1	13910152	rs12031781	C	T	223.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.393;SOR=0.582;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:232,0,294
chr1	13910417	rs355025	C	T	22930.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DB;DP=391;ExcessHet=1.5490;FS=0.000;MQ=59.98;MQRankSum=-8.230e-01;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=-7.020e-01;SOR=0.699;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:159,232:391:99:6094,0,3974
chr1	13922400	rs61777782	A	G	379.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=-2.040e+00;SOR=0.781;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:388,0,459
chr1	13933855	rs35870640	A	G	2240.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321e+00;DB;DP=50;ExcessHet=3.9794;FS=1.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-1.898e+00;SOR=0.518;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:851,0,595
chr1	13936822	rs404658	G	T	4531.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.149e+00;DB;DP=83;ExcessHet=3.9794;FS=1.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=0.747;SOR=0.583;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2597,248,0
chr1	13937089	rs2487643	G	T	4062.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DB;DP=70;ExcessHet=3.9794;FS=1.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=1.15;SOR=0.867;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2319,210,0
chr1	13937281	rs4391657	T	C	1108.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=1.07;SOR=0.439;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
chr1	13940365	rs34784418	CT	C	498.29	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=15;ExcessHet=3.9794;FS=5.723;MQ=59.80;MQRankSum=0.00;QD=17.18;ReadPosRankSum=0.660;SOR=2.362;VQSLOD=4.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,5:15:3:142,3,0
chr1	13940473	rs2483135	G	A	395.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=1.42;SOR=0.610;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	13940864	rs2486188	C	G	15334.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=0.718;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4787,471,0
chr1	14041871	rs79054615	A	G	66.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=2.303;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	14042309	rs7411176	G	A	1003.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=49;ExcessHet=3.0103;FS=3.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=-1.182e+00;SOR=1.501;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,31:49:99:1012,0,506
chr1	14049073	rs116605794	G	A	156.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e-01;DB;DP=14;ExcessHet=3.0103;FS=2.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=1.27;SOR=0.169;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:165,0,226
chr1	14049383	rs74557977	G	T	302.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260e-01;DB;DP=57;ExcessHet=3.0103;FS=4.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.30;ReadPosRankSum=-3.990e-01;SOR=0.963;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,15:57:99:311,0,1186
chr1	14057258	rs2277	G	A	263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-2.300e-01;SOR=0.375;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:272,0,346
chr1	14057425	rs35643856	G	GA	511.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630e-01;DB;DP=60;ExcessHet=3.0103;FS=3.741;MQ=60.00;MQRankSum=0.00;QD=8.52;ReadPosRankSum=0.595;SOR=0.400;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,27:60:99:520,0,684
chr1	14057478	rs146545513	C	T	1215.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=86;ExcessHet=3.0103;FS=9.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=1.31;SOR=1.700;VQSLOD=18.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1224,0,1218
chr1	14059111	rs116100589	T	C	87.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-4.140e-01;SOR=0.368;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:96:96,0,175
chr1	14059395	rs33969518	T	C	553.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;DB;DP=55;ExcessHet=3.0103;FS=1.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-9.510e-01;SOR=0.474;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,24:55:99:562,0,761
chr1	14068369	rs200685114	G	GT	37.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.22;ReadPosRankSum=-1.282e+00;SOR=0.307;VQSLOD=6.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:46:46,0,109
chr1	14096821	rs1210110	T	C	1221.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.155e+00;DB;DP=51;ExcessHet=3.9794;FS=1.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=1.07;SOR=0.568;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:564,0,720
chr1	14099763	rs10803426	C	T	2447.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.855e+00;DB;DP=74;ExcessHet=3.9794;FS=2.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=-2.060e-01;SOR=0.424;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,50:74:99:1440,0,677
chr1	14099898	rs1203677	A	G	267.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.28;SOR=1.179;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:154,0,61
chr1	14105139	rs2076324	T	A	4972.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.85;DB;DP=174;ExcessHet=3.9794;FS=4.586;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-1.020e-01;SOR=0.490;VQSLOD=7.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,87:174:99:2506,0,2841
chr1	14105298	rs1203678	G	A	2701.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DB;DP=68;ExcessHet=3.9794;FS=3.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=1.20;SOR=0.980;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,34:68:99:960,0,868
chr1	14106394	rs2308040	A	ACTC	4734.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=64;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.65;ReadPosRankSum=1.48;SOR=0.724;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,28:64:99:1067,0,1634
chr1	14109114	rs1203651	A	G	1708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DB;DP=50;ExcessHet=3.9794;FS=2.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=1.49;SOR=0.473;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,31:50:99:799,0,514
chr1	14109408	rs35153743	CT	C	182.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.940e-01;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=59.93;MQRankSum=0.00;QD=1.69;ReadPosRankSum=1.65;SOR=0.727;VQSLOD=4.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,8:30:99:108,0,416
chr1	14143003	rs1046331	A	G	10269.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=111;ExcessHet=3.0103;FS=1.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=0.953;SOR=0.528;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,64:111:99:1626,0,1014
chr1	14149396	rs2744681	G	A	283.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.59;SOR=4.407;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	14149505	rs2697970	C	A	1176.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=19;ExcessHet=3.9794;FS=6.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=1.39;SOR=0.164;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:298,0,290
chr1	14149601	rs2697969	C	T	3369.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=71;ExcessHet=3.9794;FS=1.134;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=1.01;SOR=0.605;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,32:71:99:743,0,973
chr1	14149622	rs2697968	T	C	3555.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538e+00;DB;DP=76;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.704;SOR=0.669;VQSLOD=6.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,33:76:99:809,0,961
chr1	14149844	rs1046333	T	A	942.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=0.882;SOR=0.434;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:196,0,296
chr1	15370755	rs11808219	G	A	134.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.71;SOR=3.258;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr1	15421216	rs151218750	T	C	247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DB;DP=24;ExcessHet=3.0103;FS=7.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-2.980e-01;SOR=2.391;VQSLOD=18.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:256,0,442
chr1	15427783	rs72640711	G	T	161.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.40;ReadPosRankSum=-6.910e-01;SOR=0.551;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:15427783_G_T:170,0,276:15427783
chr1	15427801	rs12040354	C	T	472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.750;SOR=0.527;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,11:19:99:1|0:15427783_G_T:319,0,291:15427783
chr1	15427934	rs10927676	C	T	2177.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=103;ExcessHet=3.9794;FS=5.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.486;SOR=1.119;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,55:103:99:1407,0,1065
chr1	15427982	rs502918	G	A	7017.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.41;DB;DP=111;ExcessHet=3.0103;FS=0.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=-2.385e+00;SOR=0.773;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3286,331,0
chr1	15428358	rs477953	T	C	6590.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=1.906;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1805,159,0
chr1	15428508	rs476859	C	T	454.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.600e-02;DB;DP=10;ExcessHet=1.5490;FS=6.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=-1.980e-01;SOR=2.786;VQSLOD=18.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:100,0,156
chr1	15429696	rs555377	G	C	316.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=6;ExcessHet=3.9794;FS=3.067;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-8.420e-01;SOR=1.981;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,117
chr1	15430228	rs529587	G	C	712.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=0.703;SOR=0.673;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:153,0,107
chr1	15430895	rs6695209	G	A	206.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=0.464;SOR=1.863;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:54:215,0,54
chr1	15430933	rs523125	G	A	416.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=-1.282e+00;SOR=1.911;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	15438825	rs139705142	ATGTGTGTGTGTGTG	A,ATGTGTGTG	1865.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.73;SOR=6.479;VQSLOD=3.86;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,10,4:14:99:585,164,174,414,0,400
chr1	15438990	rs10803354	G	A	4812.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211e+00;DB;DP=120;ExcessHet=6.9897;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.357;SOR=0.738;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,51:120:99:1214,0,1912
chr1	15439083	rs140963536	A	AAGGTCTTTTTTTTCTTCTCCCAGCGGC	3974.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-01;DB;DP=65;ExcessHet=6.9897;FS=4.105;MQ=60.00;MQRankSum=0.00;QD=17.59;ReadPosRankSum=-4.078e+00;SOR=1.000;VQSLOD=2.55;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1382,0,1100
chr1	15439227	rs12046842	C	A	624.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.423;SOR=0.557;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:169,0,274
chr1	15439233	rs150305993	G	GC	91.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.936;SOR=0.527;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:100,0,132
chr1	15441275	rs1055412	C	T	329.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=-1.693e+00;SOR=0.693;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr1	15490962	rs11582684	A	G	2647.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=86;ExcessHet=3.9794;FS=1.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-3.410e-01;SOR=0.885;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,42:86:99:1076,0,1041
chr1	15497727	rs6429722	T	C	10661.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=1.142;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3468,339,0
chr1	15497832	rs41307794	T	C	1311.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=119;ExcessHet=3.0103;FS=2.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.215e+00;SOR=0.505;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,54:119:99:1320,0,1548
chr1	15497844	rs10429935	T	A	6606.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DB;DP=110;ExcessHet=3.9794;FS=2.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.060;SOR=0.879;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,109:110:99:3131,318,0
chr1	15497954	rs6689923	A	G	2023.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.11;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=1.50;SOR=0.544;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1045,78,0
chr1	15541407	rs3753316	C	T	422.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.24;ReadPosRankSum=1.22;SOR=0.693;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:22:288,0,22
chr1	15541537	rs3753314	C	T	6422.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=2.206;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2767,258,0
chr1	15546077	rs3753313	G	A	4208.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060e+00;DB;DP=354;ExcessHet=3.0103;FS=1.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-1.460e-01;SOR=0.813;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:171,183:354:99:4217,0,4128
chr1	15573758	rs1780597	G	A	134.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:40,0,35
chr1	15573769	rs1752017	G	A	273.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.17;ReadPosRankSum=-5.240e-01;SOR=0.330;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:70:0|1:15573769_G_A:154,0,70:15573769
chr1	15573775	rs1780598	A	G	273.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.17;ReadPosRankSum=-5.240e-01;SOR=0.330;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:70:0|1:15573769_G_A:154,0,70:15573769
chr1	15573950	rs1780599	A	C	428.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910e-01;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.578;SOR=0.784;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:246,0,293
chr1	15574076	rs1752016	C	T	280.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.110e-01;DB;DP=12;ExcessHet=3.9794;FS=2.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-3.890e-01;SOR=0.283;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:221,0,146
chr1	15578114	rs1780609	C	T	424.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=1.24;SOR=1.022;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:99:0|1:15578114_C_T:288,0,111:15578114
chr1	15578122	rs1752001	T	C	418.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=1.69;SOR=0.693;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,7:10:99:0|1:15578114_C_T:285,0,146:15578114
chr1	15578195	rs1622686	T	C	837.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=30;ExcessHet=3.9794;FS=1.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.635;SOR=0.394;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:541,0,318
chr1	15599160	rs6703580	G	T	196.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.52;ReadPosRankSum=0.524;SOR=1.179;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:15599160_G_T:75,0,179:15599160
chr1	15599164	rs6703582	G	C	196.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.52;ReadPosRankSum=0.524;SOR=1.179;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:15599160_G_T:75,0,182:15599160
chr1	15616139	rs486557	G	A	3247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e+00;DB;DP=264;ExcessHet=3.0103;FS=1.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.416;SOR=0.800;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,135:264:99:3256,0,3360
chr1	15616183	rs487338	T	C	7383.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347e+00;DB;DP=179;ExcessHet=1.5490;FS=1.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=-4.630e-01;SOR=0.811;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,89:179:99:2327,0,2423
chr1	15635500	rs10489961	G	T	434.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=4.977;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	15650784	rs3765354	T	G	346.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=14;ExcessHet=3.9794;FS=11.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.52;SOR=3.309;VQSLOD=11.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,7:14:99:0|1:15650784_T_G:270,0,497:15650784
chr1	15650791	rs3765355	G	C	337.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=16;ExcessHet=3.9794;FS=11.067;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=1.98;SOR=3.215;VQSLOD=11.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,7:16:99:0|1:15650784_T_G:267,0,536:15650784
chr1	15651062	rs3765356	A	G	700.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=26;ExcessHet=3.9794;FS=6.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.925;SOR=1.981;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,13:26:99:1|0:15651057_T_C:351,0,333:15651057
chr1	15653503	rs7532559	A	G	1278.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=42;ExcessHet=3.9794;FS=1.660;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.302;SOR=0.481;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:554,0,436
chr1	15653563	rs3765357	C	T	2103.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DB;DP=72;ExcessHet=3.9794;FS=2.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.859;SOR=0.949;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,39:72:99:1017,0,796
chr1	15653872	rs10127456	G	A	964.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=14;ExcessHet=3.9794;FS=3.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=0.667;SOR=1.696;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:246,0,210
chr1	15654737	rs144888008	C	CT	310.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.610e-01;DB;DP=28;ExcessHet=3.9794;FS=3.984;MQ=60.00;MQRankSum=0.00;QD=5.85;ReadPosRankSum=0.878;SOR=1.270;VQSLOD=5.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,12:28:99:174,0,336
chr1	15668276	rs763821	G	A	2049.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.960e-01;DB;DP=35;ExcessHet=1.5490;FS=5.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=-1.420e-01;SOR=0.226;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:714,0,292
chr1	15684545	.	G	T	52.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.10;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:61,0,76
chr1	15701356	rs10159174	G	T	1263.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DB;DP=13;ExcessHet=3.0103;FS=2.759;MQ=59.69;MQRankSum=-3.650e-01;NEGATIVE_TRAIN_SITE;QD=34.16;ReadPosRankSum=-5.930e-01;SOR=1.863;VQSLOD=-1.272e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:13:50:255,0,50
chr1	15723843	rs2294490	G	A	2648.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083e+00;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=0.486;SOR=0.697;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:354,0,442
chr1	15724033	rs2253372	A	G	4385.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DB;DP=49;ExcessHet=3.0103;FS=1.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=-5.600e-01;SOR=1.005;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:622,0,563
chr1	15754484	rs2473356	T	C	5799.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.640e-01;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=1.01;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=1.38;SOR=0.749;VQSLOD=2.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1062,0,1148
chr1	15755248	rs3765372	C	T	132.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.497;SOR=1.508;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:140,0,108
chr1	15769876	rs35149641	G	GC	9676.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.99;SOR=1.811;VQSLOD=5.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2989,253,0
chr1	15772057	rs10927786	G	T	587.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-01;DB;DP=42;ExcessHet=3.0103;FS=8.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-3.790e-01;SOR=2.194;VQSLOD=18.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:596,0,666
chr1	15772454	rs35392581	C	CATTT	420.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.11;ReadPosRankSum=0.179;SOR=1.022;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,189
chr1	15772933	rs555015	A	G	735.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=21;ExcessHet=3.9794;FS=4.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=1.18;SOR=0.094;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:282,0,466
chr1	15783096	rs5772641	GA	G	7396.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.663e+00;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.67;SOR=0.492;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2720,285,0
chr1	15783117	rs5772642	C	CA	11220.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=27.22;SOR=1.126;VQSLOD=5.27;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3744,304,0
chr1	15788269	rs3737696	A	C	11496.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=0.808;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3509,315,0
chr1	15802288	.	GAAA	G	706.41	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.53;ReadPosRankSum=1.15;SOR=4.407;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:13:181,13,0
chr1	15812432	rs6429745	A	G	9936.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=109;ExcessHet=3.0103;FS=2.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=1.31;SOR=1.769;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3248,327,0
chr1	15813751	rs2011159	C	T	15126.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=1.703;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4040,367,0
chr1	15819768	rs884363	C	A	212.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-5.240e-01;SOR=0.818;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:50,0,33
chr1	15820576	rs2020900	T	A	1381.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=30;ExcessHet=6.9897;FS=1.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.607;SOR=1.189;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:424,0,576
chr1	15820607	rs2020895	A	G	994.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=0.00;SOR=0.238;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:319,0,305
chr1	15820618	rs2020898	A	G	854.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=0.398;SOR=0.241;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:249,0,241
chr1	15821585	rs4233532	C	T	455.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=0.489;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:18:255,0,18
chr1	15822073	rs4646090	A	G	779.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=20;ExcessHet=3.9794;FS=6.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=0.761;SOR=2.085;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:368,0,243
chr1	15832281	rs1800615	C	T	149.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=1.37;SOR=0.307;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:102,0,140
chr1	15832383	rs1800614	G	T	1345.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166e+00;DB;DP=32;ExcessHet=6.9897;FS=3.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.768;SOR=0.296;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:534,0,442
chr1	15832543	rs1052576	T	C	4678.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=149;ExcessHet=6.9897;FS=0.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-1.240e-01;SOR=0.761;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,62:149:99:1381,0,1994
chr1	15832789	rs35997775	C	CA	122.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=13.58;ReadPosRankSum=0.00;SOR=3.126;VQSLOD=3.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:16:68,0,16
chr1	15834160	rs4646034	T	C	165.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=11;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-8.200e-01;SOR=0.976;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:95:95,0,181
chr1	15834297	rs2020903	G	A	922.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240e+00;DB;DP=15;ExcessHet=6.9897;FS=3.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.317;SOR=1.600;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:252,0,182
chr1	15834491	rs4646032	G	A	3128.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=53;ExcessHet=6.9897;FS=2.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.00;SOR=0.553;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,35:53:99:898,0,379
chr1	15844615	rs1132312	A	G	2029.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443e+00;DB;DP=39;ExcessHet=6.9897;FS=2.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-3.400e-01;SOR=0.880;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:399,0,539
chr1	15844926	rs1820205	C	T	2966.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=90;ExcessHet=6.9897;FS=2.083;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.657;SOR=0.830;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,36:90:99:904,0,1387
chr1	15845022	rs112189619	C	CTGAG	1625.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250e-01;DB;DP=31;ExcessHet=6.9897;FS=3.393;MQ=60.00;MQRankSum=0.00;QD=14.14;ReadPosRankSum=0.166;SOR=1.124;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,10:31:99:364,0,944
chr1	15850483	rs4645985	G	A	219.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.68;ReadPosRankSum=0.539;SOR=0.358;VQSLOD=22.42;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:51:51,0,348
chr1	15850553	rs4645984	C	CGGGGGCG	829.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;DB;DP=40;ExcessHet=6.9897;FS=5.231;MQ=59.92;MQRankSum=0.00;QD=7.48;ReadPosRankSum=-1.033e+00;SOR=1.371;VQSLOD=4.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,7:40:99:223,0,1453
chr1	15850613	rs1052571	G	A	3159.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082e+00;DB;DP=82;ExcessHet=6.9897;FS=4.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-1.114e+00;SOR=0.984;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,33:82:99:685,0,1189
chr1	15860563	rs6703016	T	A	367.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-1.006e+00;SOR=0.324;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:166,0,130
chr1	15861073	rs6690813	C	A	454.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-3.280e-01;SOR=0.569;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:184,0,129
chr1	15873386	rs7515244	A	G	1366.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=52;ExcessHet=3.9794;FS=0.684;MQ=59.89;MQRankSum=0.738;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=0.371;SOR=0.779;VQSLOD=2.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,17:52:99:389,0,849
chr1	15873410	.	CTT	C	976.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DP=23;ExcessHet=3.9794;FS=11.947;MQ=59.89;MQRankSum=0.00;QD=13.02;ReadPosRankSum=0.602;SOR=2.136;VQSLOD=1.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:23:99:288,0,216
chr1	15874961	rs2295626	T	A	2685.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260e-01;DB;DP=101;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.102;SOR=0.700;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,54:101:99:1405,0,1197
chr1	15890342	rs71002909	CA	C	47.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.98;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:41:56,0,41
chr1	15893862	rs2042367	C	T	332.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=0.345;SOR=0.914;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:75:100,0,75
chr1	15906696	.	CTT	C	243.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;QD=11.05;ReadPosRankSum=1.27;SOR=0.892;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:17:99:128,0,115
chr1	15909547	rs6429756	G	A	611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-1.193e+00;SOR=0.593;VQSLOD=6.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:162,0,235
chr1	15909624	rs111921608	TGAGTACAG	T	2052.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DB;DP=38;ExcessHet=6.9897;FS=1.661;MQ=60.00;MQRankSum=0.00;QD=16.83;ReadPosRankSum=1.35;SOR=0.489;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,18:38:99:696,0,956
chr1	15909850	rs6429757	C	G	1580.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=41;ExcessHet=6.9897;FS=6.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.688;SOR=1.167;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,11:41:99:264,0,855
chr1	15909895	rs6429758	A	G	1137.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.380;SOR=0.625;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,6:25:99:145,0,542
chr1	15910811	rs111795327	C	CT	112.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.090;SOR=0.330;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:66:121,0,66
chr1	15911010	rs10927807	T	G	3030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=73;ExcessHet=6.9897;FS=5.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-5.630e-01;SOR=0.393;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,31:73:99:957,0,1282
chr1	15911031	rs10927808	T	G	4053.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.24;DB;DP=92;ExcessHet=6.9897;FS=0.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=0.582;SOR=0.630;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,41:92:99:1260,0,1391
chr1	15911349	rs3737705	G	A	2709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=105;ExcessHet=3.9794;FS=3.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.632;SOR=0.426;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,54:105:99:1716,0,1530
chr1	15911493	rs6687474	A	G	450.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=13;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-4.310e-01;SOR=0.420;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:127,0,264
chr1	15959886	rs3795762	C	G	1016.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740e-01;DB;DP=30;ExcessHet=6.9897;FS=8.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=1.39;SOR=0.193;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:316,0,508
chr1	15965025	.	C	CT	543.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.86;MQRankSum=0.00;QD=16.98;ReadPosRankSum=-7.440e-01;SOR=2.935;VQSLOD=4.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:31:100,0,31
chr1	15978553	rs58073350	CT	C	130.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.55;MQRankSum=0.00;QD=14.52;ReadPosRankSum=2.20;SOR=0.941;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:8:48,0,8
chr1	16011005	.	G	GGGC	3158.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930e-01;DP=55;ExcessHet=6.9897;FS=0.624;MQ=60.00;MQRankSum=0.00;QD=19.26;ReadPosRankSum=0.242;SOR=0.773;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,27:55:99:997,0,1166
chr1	16045174	rs61782447	G	A	887.41	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=32;ExcessHet=0.4576;FS=3.226;MQ=60.00;MQRankSum=0.00;QD=27.73;ReadPosRankSum=2.46;SOR=2.165;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,29:32:8:902,8,0
chr1	16046109	rs1006147	C	T	1098.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=-1.460e-01;SOR=1.464;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:47:320,0,47
chr1	16051584	rs4661647	C	T	1302.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=1.292;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:584,60,0
chr1	16056942	rs35232208	G	GA	677.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.12;ReadPosRankSum=1.91;SOR=0.277;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:147,0,235
chr1	16065276	rs71002925	AAC	A	276.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DB;DP=17;ExcessHet=3.9794;FS=4.985;MQ=60.00;MQRankSum=0.00;QD=8.91;ReadPosRankSum=-5.970e-01;SOR=0.119;VQSLOD=4.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,2:17:20:20,0,477
chr1	16065303	rs147907985	ACACACT	A	378.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.01;ReadPosRankSum=-4.500e-02;SOR=0.941;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:387,0,391
chr1	16073787	.	CA	C	45.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.40;ReadPosRankSum=0.162;SOR=0.856;VQSLOD=5.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,4:19:54:54,0,344
chr1	16095316	rs2271545	C	T	2363.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.567e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.76;ReadPosRankSum=-6.500e-01;SOR=1.556;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:698,51,0
chr1	16096893	rs12146078	C	T	1005.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=25;ExcessHet=3.9794;FS=5.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=1.60;SOR=0.169;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:462,0,329
chr1	16096934	rs10927851	C	T	5075.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.280e-01;DB;DP=65;ExcessHet=3.0103;FS=7.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.04;ReadPosRankSum=-5.580e-01;SOR=0.242;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2143,195,0
chr1	16097237	rs10803398	G	A	2352.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.63;DB;DP=19;ExcessHet=3.0103;FS=4.515;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=-6.180e-01;SOR=2.124;VQSLOD=4.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:740,57,0
chr1	16104067	.	ATT	A	52.61	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=26.31;SOR=2.303;VQSLOD=3.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
chr1	16110815	rs11576404	G	A	1352.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.80;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=2.24;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:551,0,579
chr1	16242620	rs12063905	C	A	1136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260e-01;DB;DP=68;ExcessHet=3.0103;FS=3.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=-2.860e-01;SOR=1.199;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,43:68:99:1145,0,631
chr1	16245362	rs848201	G	A	823.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648e+00;DB;DP=55;ExcessHet=3.0103;FS=2.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.447;SOR=0.368;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,29:55:99:832,0,743
chr1	16245610	.	G	GT	43.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DP=20;ExcessHet=3.0103;FS=4.337;MQ=60.00;MQRankSum=0.00;QD=2.16;ReadPosRankSum=0.426;SOR=0.061;VQSLOD=4.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:52:52,0,392
chr1	16255644	rs848208	C	T	484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453e+00;DB;DP=37;ExcessHet=3.0103;FS=4.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.183;SOR=1.290;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:493,0,650
chr1	16256007	rs848209	T	C	2678.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.150e-01;DB;DP=34;ExcessHet=0.4576;FS=3.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.89;ReadPosRankSum=0.594;SOR=0.151;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1141,102,0
chr1	16259813	rs848210	A	G	4815.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.060e-01;DB;DP=68;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.32;ReadPosRankSum=1.58;SOR=1.088;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,67:68:99:2142,163,0
chr1	16260916	rs848211	C	T	2319.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DB;DP=179;ExcessHet=3.0103;FS=6.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.06;SOR=0.386;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,89:179:99:2328,0,2292
chr1	16262404	rs61749277	C	T	826.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.254e+00;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-5.070e-01;SOR=0.693;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,31:62:99:835,0,979
chr1	16263452	rs848212	A	G	715.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=3.816;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:333,27,0
chr1	16264264	rs848213	G	A	2899.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DB;DP=207;ExcessHet=3.0103;FS=2.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=2.31;SOR=0.544;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,110:207:99:2908,0,2501
chr1	16265060	.	CTTT	C,CT	1336.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.00;DP=22;ExcessHet=3.0103;FS=3.579;MQ=59.69;MQRankSum=0.00;QD=17.82;ReadPosRankSum=0.569;SOR=0.280;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,16:22:56:642,330,326,120,0,56
chr1	16265422	rs848214	A	G	7414.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.184e+00;DB;DP=135;ExcessHet=0.4576;FS=2.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.10;ReadPosRankSum=0.018;SOR=1.705;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,133:135:99:4260,322,0
chr1	16271180	rs848216	T	C	1304.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.427;SOR=0.726;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1313,0,1492
chr1	16271260	rs9661939	G	A	6127.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.435e+00;DB;DP=155;ExcessHet=1.5490;FS=1.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=-1.960e-01;SOR=0.607;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,91:155:99:2165,0,1771
chr1	16272250	rs848217	A	G	4558.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.607e+00;DB;DP=63;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.01;ReadPosRankSum=0.578;SOR=0.673;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1824,149,0
chr1	16272409	rs9429277	C	T	5804.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e+00;DB;DP=199;ExcessHet=3.9794;FS=1.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=-2.970e-01;SOR=0.586;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,113:199:99:2900,0,2496
chr1	16272933	rs61782258	A	C	1099.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.540e-01;DB;DP=91;ExcessHet=3.0103;FS=5.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.131;SOR=0.316;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1108,0,1172
chr1	16274520	rs111974933	T	TG	372.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=1.19;SOR=0.412;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:98:98,0,229
chr1	16274769	rs698891	C	T	1964.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.280e-01;DB;DP=157;ExcessHet=3.0103;FS=2.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-1.150e+00;SOR=0.484;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,79:157:99:1973,0,2057
chr1	16330816	rs1763617	C	T	8416.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.000e-03;DB;DP=217;ExcessHet=1.5490;FS=0.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-5.300e-02;SOR=0.803;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,217:217:99:6632,649,0
chr1	16330901	rs1763616	C	T	2108.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050e-01;DB;DP=93;ExcessHet=3.9794;FS=0.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.793;SOR=0.755;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,44:93:99:1146,0,1443
chr1	16330937	rs1763615	C	T	2707.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.64;DB;DP=53;ExcessHet=1.5490;FS=1.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=0.418;SOR=1.011;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1962,159,0
chr1	16332571	rs1763612	C	T	3960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;DB;DP=197;ExcessHet=3.9794;FS=2.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-5.400e-02;SOR=0.857;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,95:197:99:2475,0,2687
chr1	16332679	rs3738646	T	C	2250.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.600e-01;DB;DP=186;ExcessHet=3.0103;FS=5.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-1.280e-01;SOR=0.628;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,91:186:99:2259,0,2425
chr1	16341733	rs1048237	T	C	640.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=8;ExcessHet=3.9794;FS=2.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=0.728;SOR=1.545;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:142,0,138
chr1	16342237	rs1739840	A	G	2965.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=48;ExcessHet=3.9794;FS=0.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.653;SOR=0.816;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:665,0,450
chr1	16342350	rs761759	A	T	660.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.9794;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=0.204;SOR=3.716;VQSLOD=14.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,70
chr1	16343322	rs1739844	T	C	443.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.12;ReadPosRankSum=-6.740e-01;SOR=1.473;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:67:0|1:16343322_T_C:67,0,78:16343322
chr1	16343324	rs3738643	G	C	52.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:61:1|0:16343322_T_C:61,0,78:16343322
chr1	16343815	rs1739845	C	A	597.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.371e+00;DB;DP=22;ExcessHet=3.9794;FS=3.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.070;SOR=0.160;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:301,0,444
chr1	16343835	rs1763596	C	T	1436.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977e+00;DB;DP=13;ExcessHet=3.9794;FS=2.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=-3.030e-01;SOR=0.281;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:163,0,271
chr1	16344360	rs732286	A	G	2924.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=70;ExcessHet=3.9794;FS=1.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=1.36;SOR=0.842;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,28:70:99:594,0,1075
chr1	16344402	rs945416	G	A	3434.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.500e-02;DB;DP=63;ExcessHet=3.9794;FS=1.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=0.199;SOR=0.555;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,23:63:99:523,0,1176
chr1	16344466	rs3738640	C	T	1099.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650e-01;DB;DP=60;ExcessHet=3.0103;FS=5.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.337;SOR=0.814;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,40:60:99:1108,0,543
chr1	16344494	rs1572381	G	A	3970.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=65;ExcessHet=3.9794;FS=4.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=0.557;SOR=0.982;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,24:65:99:631,0,1099
chr1	16344625	rs945417	C	G	2950.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=63;ExcessHet=3.9794;FS=5.585;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=-4.370e-01;SOR=1.100;VQSLOD=7.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,20:63:99:465,0,1065
chr1	16344683	rs872221	C	T	691.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=38;ExcessHet=3.9794;FS=10.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.33;ReadPosRankSum=0.452;SOR=1.897;VQSLOD=16.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,7:38:99:142,0,1281
chr1	16344684	rs56783248	G	A	785.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.955e+00;DB;DP=37;ExcessHet=3.0103;FS=4.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=-1.175e+00;SOR=0.233;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,31:37:99:794,0,166
chr1	16344730	rs945418	T	C	1242.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.690e-01;DB;DP=15;ExcessHet=3.0103;FS=4.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-7.050e-01;SOR=2.030;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:516,45,0
chr1	16344858	rs945419	C	T	70.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:76,0,26
chr1	16345619	rs945422	T	C	4416.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749e+00;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=1.65;SOR=0.732;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,37:62:99:1089,0,702
chr1	16345735	rs1544131	C	T	8819.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=220;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-2.260e-01;SOR=0.645;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,111:220:99:2901,0,2582
chr1	16346178	rs1544130	C	G	387.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=7;ExcessHet=6.9897;FS=4.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-1.679e+00;SOR=1.845;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,141
chr1	16349080	rs3738637	G	A	707.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=26;ExcessHet=6.9897;FS=1.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=1.07;SOR=0.427;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,6:26:99:137,0,577
chr1	16349137	rs9442189	G	A	1715.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=49;ExcessHet=6.9897;FS=4.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-9.090e-01;SOR=1.059;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,20:49:99:497,0,720
chr1	16349336	rs61771056	C	T	904.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180e-01;DB;DP=90;ExcessHet=3.0103;FS=0.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-2.500e-02;SOR=0.555;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,38:90:99:913,0,1316
chr1	16349460	rs9442214	T	C	1290.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=52.88;MQRankSum=-1.981e+00;NEGATIVE_TRAIN_SITE;QD=34.56;ReadPosRankSum=-1.000e-01;SOR=3.383;VQSLOD=-1.909e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:425,30,0
chr1	16350028	rs2017583	A	G	740.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.67;ReadPosRankSum=-2.450e+00;SOR=2.737;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr1	16350123	rs2017577	C	G	1954.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DB;DP=26;ExcessHet=3.9794;FS=2.131;MQ=60.00;MQRankSum=0.00;QD=22.22;ReadPosRankSum=1.34;SOR=0.484;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,18:26:99:607,0,226
chr1	16351206	rs9442215	C	T	1150.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=59.60;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-1.800e-01;SOR=0.762;VQSLOD=4.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:212,0,251
chr1	16351275	rs10927887	A	G	3259.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.365e+00;DB;DP=45;ExcessHet=3.9794;FS=10.379;MQ=59.86;MQRankSum=0.00;QD=20.00;ReadPosRankSum=-2.300e-02;SOR=0.203;VQSLOD=2.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,19:45:99:469,0,809
chr1	16351486	rs41269165	C	G	1363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=94;ExcessHet=3.0103;FS=1.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=0.102;SOR=0.933;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,49:94:99:1372,0,1068
chr1	16352937	rs1010069	G	A	5005.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575e+00;DB;DP=61;ExcessHet=3.9794;FS=5.230;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=2.25;SOR=0.433;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:947,0,861
chr1	16353400	rs9442216	T	C	7400.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.40;DB;DP=82;ExcessHet=3.0103;FS=1.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.49;ReadPosRankSum=-3.830e-01;SOR=0.515;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3042,245,0
chr1	16353482	rs67179509	A	G	1497.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.900e-01;DB;DP=22;ExcessHet=3.9794;FS=4.974;MQ=60.00;MQRankSum=0.00;QD=26.75;ReadPosRankSum=0.165;SOR=0.140;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:809,66,0
chr1	16354435	.	A	T	44.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770e+00;DP=147;ExcessHet=3.0103;FS=0.000;MQ=58.12;MQRankSum=1.37;NEGATIVE_TRAIN_SITE;QD=0.31;ReadPosRankSum=2.87;SOR=0.739;VQSLOD=-2.226e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:134,11:147:53:53,0,6641
chr1	16354590	rs12126269	A	T	1348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-1.142e+00;SOR=0.707;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,54:125:99:1357,0,1765
chr1	16354642	rs78557747	A	AT	3466.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.400e-01;DB;DP=68;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=-5.910e-01;SOR=0.745;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,45:68:99:1473,0,657
chr1	16354980	.	T	C	312.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499e+00;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.87;ReadPosRankSum=-1.410e-01;SOR=0.368;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:321,0,332
chr1	16355425	rs45451292	A	G	3323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=326;ExcessHet=3.0103;FS=1.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=1.70;SOR=0.798;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:186,140:326:99:3332,0,4684
chr1	16355638	rs79751787	T	A	4736.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.710e-01;DB;DP=156;ExcessHet=6.9897;FS=1.116;MQ=56.00;MQRankSum=-1.640e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-1.600e-02;SOR=0.834;VQSLOD=-1.667e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,62:156:99:1416,0,2390
chr1	16356501	rs1805152	G	A	3398.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=1.81;SOR=0.697;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:446,0,577
chr1	16356870	rs9442191	G	A	1089.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=0.282;SOR=1.112;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:277,0,142
chr1	16358148	rs2015509	T	C	19254.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537e+00;DB;DP=244;ExcessHet=3.0103;FS=2.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=1.00;SOR=0.947;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,244:244:99:7763,731,0
chr1	16358685	rs6669935	C	G	11411.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.600e-02;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=-2.005e+00;SOR=0.700;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,165:165:99:4653,494,0
chr1	16358932	rs10803407	T	C	15869.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=216;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=0.609;SOR=0.728;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,216:216:99:6634,648,0
chr1	16359051	rs10927892	C	A	12000.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=185;ExcessHet=3.9794;FS=1.207;MQ=60.00;MQRankSum=0.00;QD=22.86;ReadPosRankSum=2.18;SOR=0.598;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,89:185:99:2156,0,2245
chr1	16359052	rs10927893	A	G	20737.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.92;SOR=1.493;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,182:182:99:6830,550,0
chr1	16359106	rs10803408	C	T	5448.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.170e+00;DB;DP=85;ExcessHet=3.9794;FS=9.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.80;ReadPosRankSum=-9.150e-01;SOR=0.214;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,42:85:99:1153,0,1382
chr1	16359123	rs9442217	A	G	5023.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.990e-01;DB;DP=57;ExcessHet=3.0103;FS=4.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=-2.091e+00;SOR=0.252;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2025,169,0
chr1	16359827	rs3738633	A	G	6214.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.93;DB;DP=69;ExcessHet=3.9794;FS=0.910;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=-9.790e-01;SOR=0.571;VQSLOD=6.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,35:69:99:1181,0,1136
chr1	16360550	rs7365925	C	G	840.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=47.41;MQRankSum=1.93;QD=23.35;ReadPosRankSum=-2.633e+00;SOR=0.711;VQSLOD=-5.011e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,31:36:23:849,0,23
chr1	16361737	rs2863413	A	G	224.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242e+00;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=39.14;MQRankSum=-1.350e-01;QD=22.49;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=-4.872e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:6:1|1:16361737_A_G:83,6,0:16361737
chr1	16361916	rs11811753	G	A	6790.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.780e-01;DB;DP=71;ExcessHet=3.0103;FS=7.076;MQ=51.28;MQRankSum=2.17;NEGATIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=0.732;SOR=0.310;VQSLOD=-2.085e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,69:71:99:1966,121,0
chr1	16361989	rs12757385	C	T	113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772e+00;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=54.46;MQRankSum=-4.453e+00;NEGATIVE_TRAIN_SITE;QD=1.04;ReadPosRankSum=2.13;SOR=0.635;VQSLOD=-5.215e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:99,10:109:99:122,0,3994
chr1	16362119	rs2863415	T	C	2017.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.42;DB;DP=17;ExcessHet=3.9794;FS=10.393;MQ=49.20;MQRankSum=0.173;QD=31.05;ReadPosRankSum=0.057;SOR=3.984;VQSLOD=-4.928e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,13:17:99:0|1:16362109_ACT_A:571,0,166:16362109
chr1	16362125	rs2863416	G	C	1777.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.25;DB;DP=14;ExcessHet=3.9794;FS=9.226;MQ=46.69;MQRankSum=-4.280e-01;QD=32.92;ReadPosRankSum=0.921;SOR=3.611;VQSLOD=-5.257e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,10:14:99:0|1:16362109_ACT_A:492,0,132:16362109
chr1	16362201	rs61772374	G	A	355.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=38.89;MQRankSum=-4.310e-01;QD=29.65;ReadPosRankSum=1.98;SOR=1.445;VQSLOD=-5.255e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:33:0|1:16362201_G_A:121,0,33:16362201
chr1	16362543	rs61772376	C	G	6253.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=6.69;DB;DP=41;ExcessHet=3.9794;FS=2.342;MQ=47.71;MQRankSum=-2.180e+00;QD=20.92;ReadPosRankSum=0.440;SOR=0.973;VQSLOD=-3.045e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1524,123,0
chr1	16362561	rs55731534	C	G	10855.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=70;ExcessHet=3.0103;FS=3.421;MQ=50.85;MQRankSum=-7.730e+00;QD=27.69;ReadPosRankSum=-5.910e-01;SOR=0.994;VQSLOD=-3.820e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2430,210,0
chr1	16362621	rs2009044	G	A	24823.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=56.39;QD=31.83;SOR=1.307;VQSLOD=2.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4552,443,0
chr1	16362661	rs3978493	A	C	24673.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=205;ExcessHet=3.0103;FS=0.000;MQ=58.30;MQRankSum=-5.637e+00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=1.43;SOR=0.735;VQSLOD=-1.537e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,205:205:99:6019,614,0
chr1	16362712	rs2018430	C	T	22729.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.606;DB;DP=180;ExcessHet=3.9794;FS=0.539;MQ=59.53;MQRankSum=-3.498e+00;NEGATIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=0.304;SOR=0.768;VQSLOD=-1.174e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,180:180:99:1|1:16362712_C_T:7918,542,0:16362712
chr1	16362719	rs74057559	C	T	22280.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.292e+00;DB;DP=173;ExcessHet=3.9794;FS=0.538;MQ=59.44;MQRankSum=-3.309e+00;QD=24.38;ReadPosRankSum=-6.200e-02;SOR=0.733;VQSLOD=-1.039e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,173:173:99:1|1:16362712_C_T:7851,536,0:16362712
chr1	16366060	rs113281522	C	T	159.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126e+00;DB;DP=19;ExcessHet=3.0103;FS=5.161;MQ=54.16;MQRankSum=-3.561e+00;NEGATIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=-5.560e-01;SOR=0.685;VQSLOD=-2.261e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,5:19:99:0|1:16366060_C_T:168,0,636:16366060
chr1	16366069	.	C	G	156.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.680e-01;DP=18;ExcessHet=3.0103;FS=4.868;MQ=54.48;MQRankSum=-3.595e+00;NEGATIVE_TRAIN_SITE;QD=8.68;ReadPosRankSum=-2.515e+00;SOR=0.707;VQSLOD=-2.699e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,5:18:99:0|1:16366060_C_T:165,0,658:16366060
chr1	16366084	rs71631762	T	C	66.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=19;ExcessHet=3.0103;FS=6.767;MQ=57.27;MQRankSum=-3.076e+00;NEGATIVE_TRAIN_SITE;QD=3.49;ReadPosRankSum=-1.927e+00;SOR=2.254;VQSLOD=-3.224e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,2:19:75:0|1:16366060_C_T:75,0,707:16366060
chr1	16366089	rs61772380	A	G	214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299e+00;DB;DP=18;ExcessHet=3.0103;FS=1.778;MQ=57.11;MQRankSum=2.12;NEGATIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-4.890e-01;SOR=0.368;VQSLOD=-2.424e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:223,0,226
chr1	16366167	rs2019654	G	A	1653.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.098e+00;DB;DP=18;ExcessHet=3.0103;FS=1.276;MQ=55.98;MQRankSum=-2.705e+00;NEGATIVE_TRAIN_SITE;QD=24.68;ReadPosRankSum=-3.122e+00;SOR=0.994;VQSLOD=-3.201e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:530,54,0
chr1	16366213	rs2003944	T	C	864.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=16;ExcessHet=3.9794;FS=7.287;MQ=49.13;MQRankSum=-3.195e+00;QD=20.59;ReadPosRankSum=2.70;SOR=1.911;VQSLOD=-3.302e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:230,0,208
chr1	16366234	rs1815526	T	G	1105.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=43.63;QD=34.55;SOR=1.681;VQSLOD=-3.705e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:408,36,0
chr1	16370851	.	T	TACACACACACACAC	363.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.000e-02;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.21;ReadPosRankSum=0.751;SOR=0.914;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	16371932	rs6604909	A	C	6170.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=1.666;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1881,156,0
chr1	16372282	rs67016480	GT	G	424.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.204e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=-2.189e+00;SOR=0.693;VQSLOD=6.49;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:230,18,0
chr1	16372911	rs2014848	G	A	628.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.04;SOR=2.179;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:196,15,0
chr1	16372971	rs2014841	G	A	1300.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=4.680;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr1	16373124	rs5257	A	G	6669.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=1.445;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2358,230,0
chr1	16373199	rs35820664	CCTT	C	11564.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.71;SOR=0.859;VQSLOD=4.92;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4570,307,0
chr1	16373282	rs2095540	A	G	4847.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.68;SOR=2.699;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1797,150,0
chr1	16374330	rs945403	A	G	1878.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=6.479;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:898,72,0
chr1	16374533	rs2014562	G	C	11536.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=0.790;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4160,368,0
chr1	16374622	rs2863440	C	G	8218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=1.986;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2667,210,0
chr1	16374656	rs2902490	A	G	7110.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=1.203;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2304,189,0
chr1	16374994	rs1889788	C	T	28776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MQ=51.40;POSITIVE_TRAIN_SITE;QD=33.50;SOR=0.968;VQSLOD=1.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,273:273:99:9190,819,0
chr1	16375063	rs1889789	C	G	41076.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=3.0103;FS=0.000;MQ=55.88;POSITIVE_TRAIN_SITE;QD=33.00;SOR=0.966;VQSLOD=2.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,298:298:99:1|1:16375063_C_G:13391,897,0:16375063
chr1	16375064	rs1889790	A	C	41017.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MQ=55.95;POSITIVE_TRAIN_SITE;QD=34.68;SOR=0.977;VQSLOD=2.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,297:297:99:1|1:16375063_C_G:13391,897,0:16375063
chr1	16375354	rs9442227	C	T	2689.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.19;SOR=1.240;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:621,54,0
chr1	16375838	rs7545067	C	G	11393.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=1.232;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3855,381,0
chr1	16376191	rs7367494	C	T	4407.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=52.53;QD=34.60;SOR=4.121;VQSLOD=1.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1481,126,0
chr1	16376230	rs59006537	A	AT	9654.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=56.56;QD=26.38;SOR=2.659;VQSLOD=4.43;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,70:70:99:1|1:16376230_A_AT:3340,231,0:16376230
chr1	16376232	rs59924562	A	T	9654.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=56.76;QD=25.58;SOR=2.448;VQSLOD=1.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,77:77:99:1|1:16376230_A_AT:3340,231,0:16376230
chr1	16376238	rs34589727	TC	T	7155.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=56.94;QD=31.66;SOR=2.388;VQSLOD=5.13;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2505,238,0
chr1	16376278	rs7365182	G	A	11568.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=59.17;POSITIVE_TRAIN_SITE;QD=32.96;SOR=1.484;VQSLOD=4.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3915,360,0
chr1	16376319	rs7368151	T	C	14219.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.05;SOR=0.914;VQSLOD=4.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,164:164:99:4893,492,0
chr1	16376458	rs7368166	T	C	7509.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.33;SOR=2.765;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2269,186,0
chr1	16376494	rs72651918	C	G	1153.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=30.77;SOR=3.334;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:86:1|1:16376494_C_G:1165,86,0:16376494
chr1	16376518	rs71003232	T	TGCCATTATTTTTTCCTGCCCAGACAATGCCCATGCAGTGATCTGGGCCCCCAAGGACCCAGCTTCACCCCCACAGCACC	841.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=37.16;SOR=4.294;VQSLOD=3.61;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:56:1|1:16376494_C_G:854,56,0:16376494
chr1	16378649	rs2297726	C	G	2408.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.162e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=-5.210e-01;SOR=0.865;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1039,75,0
chr1	16379008	rs2050522	C	T	8802.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=58.87;POSITIVE_TRAIN_SITE;QD=34.25;SOR=2.607;VQSLOD=5.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2316,206,0
chr1	16379015	rs199907733	G	GGGGGCTGGGA	5421.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=55;ExcessHet=3.9794;FS=2.683;MQ=58.62;MQRankSum=-2.655e+00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=0.112;SOR=1.069;VQSLOD=1.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2473,165,0
chr1	16380196	rs5253	T	C	25855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=297;ExcessHet=3.0103;FS=0.000;MQ=59.50;POSITIVE_TRAIN_SITE;QD=29.82;SOR=1.244;VQSLOD=5.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,297:297:99:8640,889,0
chr1	16380243	rs2275166	A	G	5850.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=163;ExcessHet=3.9794;FS=6.681;MQ=58.20;MQRankSum=-5.686e+00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.206;SOR=0.406;VQSLOD=-6.180e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:85,78:163:99:0|1:16380243_A_G:2895,0,3134:16380243
chr1	16380252	rs2275167	C	T	5498.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907e+00;DB;DP=143;ExcessHet=3.9794;FS=3.654;MQ=57.93;MQRankSum=-5.885e+00;QD=18.89;ReadPosRankSum=0.044;SOR=0.462;VQSLOD=-2.931e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,69:143:99:0|1:16380243_A_G:2737,0,3007:16380243
chr1	16381579	rs12047064	A	G	295.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:114,0,69
chr1	16381623	rs12022144	G	A	580.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.21;ReadPosRankSum=1.35;SOR=0.495;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:210,0,190
chr1	16381718	rs1414498	T	C	4779.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.39;SOR=3.277;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:96:1284,96,0
chr1	16381722	rs12691552	C	T	1228.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-01;DB;DP=31;ExcessHet=3.9794;FS=1.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=1.37;SOR=0.518;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:459,0,430
chr1	16381792	rs12047858	T	A	3113.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=97;ExcessHet=3.9794;FS=5.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.544;SOR=0.419;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,55:97:99:1416,0,1055
chr1	16381816	rs12029508	C	T	3982.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-02;DB;DP=123;ExcessHet=3.9794;FS=1.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=1.65;SOR=0.594;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,69:123:99:1937,0,1372
chr1	16382086	rs2297727	C	T	2694.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=106;ExcessHet=3.9794;FS=1.103;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=1.90;SOR=0.600;VQSLOD=5.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,44:106:99:1208,0,1764
chr1	16382649	rs12756714	T	C	1226.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.641e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=0.704;SOR=1.287;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:448,0,202
chr1	16382718	rs12048851	T	C	2789.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=43;ExcessHet=3.9794;FS=3.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=1.80;SOR=2.069;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:855,0,886
chr1	16382730	rs12030469	C	T	3398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.24;DB;DP=61;ExcessHet=3.9794;FS=3.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.92;ReadPosRankSum=0.747;SOR=2.087;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:1134,0,1158
chr1	16382791	rs12023153	G	C	5892.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.011e+00;DB;DP=171;ExcessHet=3.9794;FS=6.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-5.750e-01;SOR=0.446;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,88:171:99:2474,0,2579
chr1	16382827	rs77508204	CTCT	C	12641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=305;ExcessHet=3.9794;FS=1.134;MQ=59.98;MQRankSum=0.00;QD=19.57;ReadPosRankSum=1.75;SOR=0.596;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:165,140:305:99:5537,0,6554
chr1	16382831	rs61769890	T	A	12794.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=305;ExcessHet=3.9794;FS=1.133;MQ=59.98;MQRankSum=0.00;QD=19.62;ReadPosRankSum=1.93;SOR=0.594;VQSLOD=4.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:164,141:305:99:5602,0,6639
chr1	16382834	rs61769891	T	A	12792.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=320;ExcessHet=3.9794;FS=0.532;MQ=59.98;MQRankSum=0.00;QD=19.04;ReadPosRankSum=-4.357e+00;SOR=0.611;VQSLOD=2.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:172,148:320:99:5602,0,6619
chr1	16382877	rs7517792	A	G	51734.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=398;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.23;SOR=0.727;VQSLOD=18.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,398:398:99:17189,1210,0
chr1	16382880	rs7512547	T	A	25374.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-01;DB;DP=405;ExcessHet=3.9794;FS=0.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=2.70;SOR=0.640;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:190,215:405:99:4976,0,4285
chr1	16383267	rs12728542	A	G	2565.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=0.140;SOR=0.765;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:705,0,372
chr1	16383329	rs138507185	T	TC	3208.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=54.63;QD=31.57;SOR=2.899;VQSLOD=3.83;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:69:1|1:16383329_T_TC:1017,69,0:16383329
chr1	16383336	rs12746138	G	C	3524.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=51.95;QD=27.99;SOR=2.162;VQSLOD=0.839;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:81:1|1:16383329_T_TC:1164,81,0:16383329
chr1	16383348	rs61769892	C	T	2478.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617e+00;DB;DP=32;ExcessHet=3.9794;FS=2.394;MQ=50.62;MQRankSum=-8.960e-01;NEGATIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=0.318;SOR=1.188;VQSLOD=-2.444e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,21:32:99:606,0,340
chr1	16383605	rs1057845	A	G	1313.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;DB;DP=11;ExcessHet=6.9897;FS=12.716;MQ=45.74;MQRankSum=-4.730e-01;QD=24.33;ReadPosRankSum=0.778;SOR=0.062;VQSLOD=-3.832e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,9:11:53:0|1:16383581_G_T:371,0,53:16383581
chr1	16383668	rs6660218	T	G	6115.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=55.16;POSITIVE_TRAIN_SITE;QD=31.27;SOR=2.144;VQSLOD=4.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1377,123,0
chr1	16383742	rs1057857	C	G	4501.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.580e-01;DB;DP=74;ExcessHet=6.9897;FS=0.000;MQ=56.84;MQRankSum=-2.370e+00;NEGATIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.50;SOR=0.675;VQSLOD=-2.452e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,49:74:99:1263,0,617
chr1	16383808	rs28690440	G	C	2028.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;DB;DP=76;ExcessHet=6.9897;FS=1.504;MQ=52.37;MQRankSum=-3.480e+00;NEGATIVE_TRAIN_SITE;QD=6.83;ReadPosRankSum=-4.280e-01;SOR=0.643;VQSLOD=-3.731e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,14:76:99:237,0,1694
chr1	16383914	rs10927896	C	T	653.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=39;ExcessHet=3.9794;FS=3.514;MQ=50.78;MQRankSum=0.767;NEGATIVE_TRAIN_SITE;QD=6.47;ReadPosRankSum=1.43;SOR=0.331;VQSLOD=-2.680e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,12:39:99:312,0,762
chr1	16384024	rs6604913	T	A	585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.31;ReadPosRankSum=-6.830e-01;SOR=0.693;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,107
chr1	16384056	rs7529069	G	A	559.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.92;ReadPosRankSum=0.792;SOR=1.270;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr1	16384986	rs28496958	G	T	936.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.504e+00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=54.01;MQRankSum=-7.890e-01;NEGATIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=-4.050e-01;SOR=0.656;VQSLOD=-2.711e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,6:21:99:0|1:16384986_G_T:182,0,888:16384986
chr1	16384998	rs1807285	G	C	1144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032e+00;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=55.59;MQRankSum=-6.150e-01;NEGATIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.149;SOR=0.631;VQSLOD=-2.600e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,5:23:99:0|1:16384986_G_T:156,0,1156:16384986
chr1	16384999	rs1807284	G	A	1144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.357e+00;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=55.67;MQRankSum=-6.150e-01;NEGATIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=0.149;SOR=0.662;VQSLOD=-2.604e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,5:23:99:0|1:16384986_G_T:156,0,1156:16384986
chr1	16385007	rs2019769	C	T	59.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.640e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=55.66;MQRankSum=-3.584e+00;NEGATIVE_TRAIN_SITE;QD=2.58;ReadPosRankSum=1.79;SOR=0.061;VQSLOD=-4.218e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,4:23:68:68,0,740
chr1	16385042	rs77667563	G	A	1427.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=42;ExcessHet=6.9897;FS=6.458;MQ=50.20;MQRankSum=0.358;NEGATIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=1.33;SOR=1.681;VQSLOD=-2.265e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,7:42:99:120,0,995
chr1	16385175	rs17853748	G	A	3928.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e-01;DB;DP=122;ExcessHet=6.9897;FS=8.910;MQ=45.65;MQRankSum=-3.306e+00;QD=11.42;ReadPosRankSum=2.46;SOR=0.973;VQSLOD=-3.952e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,29:122:99:513,0,3100
chr1	16385178	rs80297394	G	A	939.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950e+00;DB;DP=125;ExcessHet=3.0103;FS=10.164;MQ=48.21;MQRankSum=5.01;QD=7.51;ReadPosRankSum=-2.748e+00;SOR=0.820;VQSLOD=-4.488e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,47:125:99:948,0,2372
chr1	16385248	rs74054903	C	T	4500.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e+00;DB;DP=86;ExcessHet=6.9897;FS=8.667;MQ=46.21;MQRankSum=0.277;QD=20.55;ReadPosRankSum=3.88;SOR=0.329;VQSLOD=-3.632e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1401,0,1763
chr1	16385250	rs74054904	A	G	7095.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=81;ExcessHet=3.0103;FS=3.421;MQ=46.06;MQRankSum=-5.658e+00;QD=34.78;ReadPosRankSum=-1.952e+00;SOR=1.089;VQSLOD=-3.479e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1682,0,1396
chr1	16385323	rs77017249	A	G	3001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=49.08;QD=28.53;SOR=3.040;VQSLOD=-1.782e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:16385323_A_G:1113,78,0:16385323
chr1	16385330	rs3978476	G	T	2803.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=50.48;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.74;SOR=3.370;VQSLOD=1.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:63:1|1:16385323_A_G:919,63,0:16385323
chr1	16385738	rs33918184	GC	G	3822.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=38.43;POSITIVE_TRAIN_SITE;QD=28.43;SOR=9.289;VQSLOD=8.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1495,120,0
chr1	16385797	rs3978478	C	G	9766.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=124;ExcessHet=3.0103;FS=0.675;MQ=51.32;MQRankSum=0.717;NEGATIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=0.390;SOR=0.825;VQSLOD=-2.976e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,71:124:99:2088,0,1444
chr1	16385815	rs2019456	G	A	6735.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.970e-01;DB;DP=164;ExcessHet=3.9794;FS=0.000;MQ=53.94;MQRankSum=1.26;NEGATIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=-2.560e-01;SOR=0.697;VQSLOD=-2.930e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,43:164:99:911,0,3463
chr1	16385874	rs3978464	T	C	2980.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180e-01;DB;DP=348;ExcessHet=3.0103;FS=0.858;MQ=58.68;MQRankSum=-5.983e+00;QD=8.56;ReadPosRankSum=-6.190e-01;SOR=0.632;VQSLOD=-2.959e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:212,136:348:99:2989,0,5384
chr1	16385980	rs3884058	G	A	23089.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.920e-01;DB;DP=299;ExcessHet=3.0103;FS=0.000;MQ=59.16;MQRankSum=3.77;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.03;ReadPosRankSum=1.25;SOR=1.224;VQSLOD=-4.699e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,299:299:99:9666,891,0
chr1	16386008	rs2863452	T	C	21148.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.411;DB;DP=253;ExcessHet=3.0103;FS=0.000;MQ=57.55;MQRankSum=-4.510e-01;NEGATIVE_TRAIN_SITE;QD=33.78;ReadPosRankSum=1.65;SOR=1.236;VQSLOD=-1.810e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,253:253:99:8915,759,0
chr1	16386065	rs61769893	T	A	1218.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.15;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=53.19;MQRankSum=-1.520e+00;NEGATIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=2.02;SOR=0.634;VQSLOD=-3.283e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,39:102:99:1227,0,2010
chr1	16386305	rs372070031	G	GC	5638.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.640e-01;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=54.59;MQRankSum=-6.160e-01;QD=30.98;ReadPosRankSum=-8.810e-01;SOR=0.839;VQSLOD=0.436;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1509,144,0
chr1	16386416	rs9442230	G	A	11787.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=56.93;POSITIVE_TRAIN_SITE;QD=28.47;SOR=0.815;VQSLOD=3.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3508,368,0
chr1	16386447	rs11576236	G	C	10809.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=55.50;QD=29.86;SOR=1.204;VQSLOD=1.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3268,344,0
chr1	16386495	rs71510977	C	T	2155.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=71;ExcessHet=3.9794;FS=4.605;MQ=51.25;MQRankSum=0.836;NEGATIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.14;SOR=0.373;VQSLOD=-1.840e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,39:71:99:981,0,842
chr1	16388474	rs1889791	G	A	518.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=4.521;MQ=39.91;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=0.674;SOR=1.890;VQSLOD=-3.966e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:59:59,0,78
chr1	16388485	rs58894453	T	C	281.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=2.318;MQ=37.97;MQRankSum=-5.120e-01;QD=13.39;ReadPosRankSum=1.64;SOR=0.184;VQSLOD=-5.104e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:48:48,0,107
chr1	16388534	rs2863454	C	T	1259.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=43.89;MQRankSum=-6.590e-01;QD=24.23;ReadPosRankSum=0.138;SOR=0.887;VQSLOD=-4.055e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:173,0,183
chr1	16388556	rs2863455	C	T	3087.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=46.80;QD=24.95;SOR=1.385;VQSLOD=-3.011e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:57:806,57,0
chr1	16388565	rs7524413	C	G	975.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=49.03;MQRankSum=2.74;QD=18.06;ReadPosRankSum=0.235;SOR=0.559;VQSLOD=-3.875e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:448,0,342
chr1	16388580	rs3978467	C	T	2169.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=50.72;MQRankSum=-6.770e-01;NEGATIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=1.31;SOR=0.690;VQSLOD=-2.876e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:299,0,683
chr1	16388646	rs2863456	T	C	3067.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=54.36;QD=30.08;SOR=0.773;VQSLOD=1.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:96:928,96,0
chr1	16388709	rs28570004	G	T	717.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.850e-01;DB;DP=30;ExcessHet=3.9794;FS=2.900;MQ=56.06;MQRankSum=-3.096e+00;NEGATIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=1.54;SOR=0.426;VQSLOD=-3.175e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:30:99:382,0,320
chr1	16388737	rs3978468	G	A	1018.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=19;ExcessHet=3.9794;FS=1.053;MQ=55.32;MQRankSum=3.04;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=-1.990e-01;SOR=0.676;VQSLOD=-1.989e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:296,0,284
chr1	16388766	rs3978469	C	T	1418.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=19;ExcessHet=3.0103;FS=2.157;MQ=55.80;MQRankSum=2.69;NEGATIVE_TRAIN_SITE;QD=32.23;ReadPosRankSum=1.01;SOR=0.223;VQSLOD=-2.620e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,17:19:33:619,0,33
chr1	16388904	rs2902491	A	T	459.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.15;ReadPosRankSum=0.330;SOR=0.425;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:16388904_A_T:293,0,144:16388904
chr1	16388909	rs2863457	T	C	368.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=12;ExcessHet=1.5490;FS=2.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=-1.876e+00;SOR=0.307;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:16388904_A_T:293,0,144:16388904
chr1	16389026	rs2863458	T	C	426.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.11;MQRankSum=0.022;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=0.135;SOR=0.666;VQSLOD=1.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:58:179,0,58
chr1	16451413	rs1803527	C	T	389.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.10;SOR=4.804;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr1	16451767	rs3754334	G	A	7727.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=157;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-8.900e-02;SOR=0.718;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,91:157:99:2286,0,1571
chr1	16456176	rs3768294	G	A	2998.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=46;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=0.477;SOR=0.629;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:673,0,905
chr1	16458814	rs2291805	C	T	7629.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214e+00;DB;DP=203;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.602;SOR=0.721;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,86:203:99:2020,0,3289
chr1	16459745	rs10907223	G	A	10134.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=242;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.30;SOR=0.691;VQSLOD=6.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:135,107:242:99:2839,0,3719
chr1	16460339	rs6669624	G	A	1390.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=38;ExcessHet=6.9897;FS=3.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-1.033e+00;SOR=0.477;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:340,0,631
chr1	16460541	rs6603855	T	C	1768.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-02;DB;DP=58;ExcessHet=6.9897;FS=8.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-2.030e-01;SOR=0.330;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,25:58:99:562,0,824
chr1	16460743	rs147659128	TAAC	T	5926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.85;SOR=1.072;VQSLOD=4.38;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1525,102,0
chr1	16460840	rs6603856	G	A	3096.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-9.630e-01;SOR=0.699;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,32:58:99:907,0,656
chr1	16461833	rs13375644	C	T	866.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=26;ExcessHet=6.9897;FS=2.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-8.700e-01;SOR=0.817;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:258,0,380
chr1	16464260	rs11260742	T	C	1239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780e+00;DB;DP=27;ExcessHet=6.9897;FS=2.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.829;SOR=1.526;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:289,0,601
chr1	16464673	rs2230597	G	A	2151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240e-01;DB;DP=166;ExcessHet=3.0103;FS=1.938;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.934;SOR=0.896;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,84:166:99:2160,0,2126
chr1	16474701	rs6603867	G	A	890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.270e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=0.357;SOR=0.693;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:420,0,244
chr1	16474839	rs35127370	AC	A	3896.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;DB;DP=151;ExcessHet=3.9794;FS=0.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.777;SOR=0.730;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,73:151:99:1927,0,2053
chr1	16475123	rs6678616	C	T	11584.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.278e+00;DB;DP=317;ExcessHet=3.9794;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=-1.178e+00;SOR=0.631;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:176,141:317:99:0|1:16475123_C_T:5307,0,9483:16475123
chr1	16475126	rs6678618	C	T	11625.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=319;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=-9.070e-01;SOR=0.668;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:178,141:319:99:0|1:16475123_C_T:5323,0,9523:16475123
chr1	16524869	rs221031	T	C	65.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:71,0,32
chr1	16525056	rs451260	G	T	2142.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-01;DB;DP=40;ExcessHet=3.9794;FS=0.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.056;SOR=0.591;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:518,0,521
chr1	16525549	rs221032	C	T	4563.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680e-01;DB;DP=72;ExcessHet=3.9794;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=0.915;SOR=0.784;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:953,0,1123
chr1	16525887	rs221033	G	C	2228.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=-6.350e-01;SOR=0.582;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:361,0,512
chr1	16525966	rs221034	T	C	604.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=0.307;SOR=0.557;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:182,0,203
chr1	16528233	rs221037	G	A	3946.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DB;DP=53;ExcessHet=3.9794;FS=4.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=1.65;SOR=1.041;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,28:53:99:806,0,728
chr1	16528469	rs58225172	GCC	G	4558.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=47;ExcessHet=3.0103;FS=11.771;MQ=60.00;MQRankSum=0.00;QD=33.04;ReadPosRankSum=-4.310e-01;SOR=2.054;VQSLOD=1.75;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,14:47:99:0|1:16528469_GCC_G:490,0,5411:16528469
chr1	16528472	rs200243292	TACCCTAGGGACC	T	4552.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.15;DB;DP=47;ExcessHet=3.0103;FS=11.771;MQ=60.00;MQRankSum=0.00;QD=32.99;ReadPosRankSum=-5.700e-01;SOR=2.054;VQSLOD=1.72;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,14:47:99:0|1:16528469_GCC_G:489,0,5413:16528469
chr1	16528721	rs221038	A	G	584.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.38;ReadPosRankSum=-5.240e-01;SOR=1.148;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr1	16528823	rs71574165	GCCATGGGGACGGGGTGCCCA	G	2325.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.74;ReadPosRankSum=1.58;SOR=0.818;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,15:37:99:520,0,3797
chr1	16529117	rs221039	T	C	5186.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=73;ExcessHet=3.9794;FS=1.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=0.116;SOR=0.856;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,37:73:99:1094,0,961
chr1	16532803	rs221050	G	A	9164.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895e+00;DB;DP=132;ExcessHet=3.9794;FS=0.558;MQ=59.97;MQRankSum=1.05;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=0.237;SOR=0.760;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,68:132:99:1900,0,1913
chr1	16532848	rs221051	A	G	12257.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586e+00;DB;DP=181;ExcessHet=3.9794;FS=0.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=1.47;SOR=0.773;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,95:181:99:2443,0,2233
chr1	16533022	rs221052	C	T	11401.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660e-01;DB;DP=132;ExcessHet=3.0103;FS=3.148;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=1.12;SOR=1.150;VQSLOD=6.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,64:132:99:1766,0,1846
chr1	16533085	rs34933259	A	AC	1255.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.770e-01;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.03;ReadPosRankSum=-1.340e-01;SOR=0.636;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,7:23:99:0|1:16533085_A_AC:246,0,686:16533085
chr1	16533096	rs221053	C	T	1231.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.314e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.87;ReadPosRankSum=-5.550e-01;SOR=0.693;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,7:22:99:0|1:16533085_A_AC:249,0,658:16533085
chr1	16533105	rs221054	G	C	1039.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.39;ReadPosRankSum=1.33;SOR=0.656;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,6:19:99:0|1:16533085_A_AC:213,0,553:16533085
chr1	16533258	rs221055	C	T	1051.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310e+00;DB;DP=17;ExcessHet=3.9794;FS=3.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=-9.400e-02;SOR=0.201;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:205,0,258
chr1	16533817	rs170234	T	C	2130.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=36;ExcessHet=3.9794;FS=6.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=0.048;SOR=0.242;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:492,0,627
chr1	16533830	rs149715516	AATTC	A	2165.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=19;ExcessHet=3.0103;FS=7.478;MQ=60.00;MQRankSum=0.00;QD=32.63;ReadPosRankSum=-1.115e+00;SOR=0.072;VQSLOD=3.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,11:19:99:423,0,391
chr1	16534002	rs221056	C	G	5392.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115e+00;DB;DP=87;ExcessHet=3.9794;FS=0.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=1.37;SOR=0.610;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,48:87:99:1380,0,1099
chr1	16534255	rs221057	C	G	6202.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=110;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=1.46;SOR=0.708;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,57:110:99:1533,0,1538
chr1	16534646	rs221058	C	G	5569.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148e+00;DB;DP=149;ExcessHet=3.9794;FS=1.697;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.631;SOR=0.799;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,68:149:99:1579,0,2058
chr1	16534730	rs221059	G	A	3093.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=-8.460e-01;SOR=0.707;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,30:72:99:768,0,1183
chr1	16534921	rs221060	A	G	861.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.48;ReadPosRankSum=0.967;SOR=0.473;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:79,0,33
chr1	16535804	rs221061	G	C	1897.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.30;ReadPosRankSum=0.349;SOR=1.237;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:227,0,143
chr1	16543175	rs221024	A	C	9562.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245e+00;DB;DP=147;ExcessHet=3.0103;FS=1.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.91;ReadPosRankSum=-9.690e-01;SOR=0.874;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,76:147:99:1859,0,1901
chr1	16731510	rs525409	C	G	7693.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=1.160;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3608,336,0
chr1	16731646	rs3106498	T	C	8329.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=1.746;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2668,264,0
chr1	16735364	.	CAAAAA	C,CA	475.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.94;SOR=5.421;VQSLOD=4.34;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,4,3:7:53:294,73,53,98,0,77
chr1	16735403	rs71003282	G	GC	1145.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.04;ReadPosRankSum=-5.800e-01;SOR=0.925;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:580,57,0
chr1	16767506	rs2783371	T	C	1967.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.94;SOR=4.294;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:595,54,0
chr1	16778265	rs279782	G	T	1942.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-01;DB;DP=35;ExcessHet=6.9897;FS=6.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.600;SOR=1.225;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,14:35:99:442,0,582
chr1	16782519	.	CT	C	66.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=8;ExcessHet=3.0103;FS=5.051;MQ=59.63;MQRankSum=0.00;QD=8.28;ReadPosRankSum=0.887;SOR=0.042;VQSLOD=4.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:74:75,0,74
chr1	16802890	rs696095	G	A	6667.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=167;ExcessHet=6.9897;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.06;SOR=0.687;VQSLOD=6.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,73:167:99:1897,0,2269
chr1	16803267	rs156846	T	C	131.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=12;ExcessHet=3.0103;FS=4.771;MQ=48.60;MQRankSum=-3.087e+00;QD=11.00;ReadPosRankSum=0.984;SOR=0.048;VQSLOD=-2.004e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:138,0,297
chr1	16862282	rs11260784	G	A	722.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.815e+00;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=48.04;MQRankSum=-3.460e-01;QD=7.94;ReadPosRankSum=1.74;SOR=0.541;VQSLOD=-3.661e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,26:91:99:730,0,2383
chr1	16862296	rs1759227	G	C	4639.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.41;DB;DP=124;ExcessHet=6.9897;FS=1.449;MQ=47.81;MQRankSum=-1.397e+00;QD=10.00;ReadPosRankSum=1.30;SOR=0.373;VQSLOD=-3.420e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,34:124:99:939,0,2872
chr1	16862340	rs200564364	G	A	3943.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.372e+00;DB;DP=295;ExcessHet=3.9794;FS=1.710;MQ=47.12;MQRankSum=-6.656e+00;QD=5.67;ReadPosRankSum=1.01;SOR=0.504;VQSLOD=-5.178e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:222,73:295:99:1725,0,7127
chr1	16862502	rs141629643	A	G	48486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.24;DB;DP=1178;ExcessHet=6.9897;FS=1.731;MQ=48.46;MQRankSum=-5.460e+00;QD=13.30;ReadPosRankSum=-1.094e+00;SOR=0.831;VQSLOD=-4.020e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:627,551:1178:99:13802,0,14663
chr1	16862712	rs61769538	G	T	21563.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.166e+00;DB;DP=217;ExcessHet=6.9897;FS=5.101;MQ=43.51;MQRankSum=-1.132e+01;QD=29.54;ReadPosRankSum=-1.350e+00;SOR=1.418;VQSLOD=-5.134e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:69,148:217:99:0|1:16862708_T_G:6185,0,2546:16862708
chr1	16862714	rs61769539	T	G	20832.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.39;DB;DP=210;ExcessHet=6.9897;FS=5.362;MQ=43.42;MQRankSum=-1.134e+01;QD=29.22;ReadPosRankSum=-1.750e+00;SOR=1.420;VQSLOD=-5.162e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:66,144:210:99:0|1:16862708_T_G:6049,0,2448:16862708
chr1	16862749	.	A	G	479.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.085e+00;DP=86;ExcessHet=3.9794;FS=2.277;MQ=43.81;MQRankSum=-2.794e+00;QD=2.44;ReadPosRankSum=0.013;SOR=1.184;VQSLOD=-4.274e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,18:86:99:351,0,2704
chr1	16862774	rs5772679	CTG	C	1526.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DB;DP=52;ExcessHet=6.9897;FS=2.400;MQ=42.37;MQRankSum=-2.771e+00;POSITIVE_TRAIN_SITE;QD=7.24;ReadPosRankSum=-7.140e-01;SOR=1.245;VQSLOD=0.773;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,8:52:99:204,0,1811
chr1	16862803	.	G	C	604.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.01;DP=34;ExcessHet=6.9897;FS=0.000;MQ=42.58;MQRankSum=-1.935e+00;QD=3.83;ReadPosRankSum=-2.040e-01;SOR=0.242;VQSLOD=-4.370e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,6:34:99:99,0,1034
chr1	16862821	rs377076903	G	A	2175.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120e-01;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=44.30;MQRankSum=-5.074e+00;QD=18.92;ReadPosRankSum=0.202;SOR=0.258;VQSLOD=-3.733e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:24:99:291,0,511
chr1	16862858	rs61769540	A	G	1731.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=41.19;MQRankSum=-3.050e+00;QD=21.38;ReadPosRankSum=0.602;SOR=0.368;VQSLOD=-4.161e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:99:230,0,100
chr1	16862875	rs77017764	G	A	1941.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=41.66;MQRankSum=-3.536e+00;QD=28.56;ReadPosRankSum=-4.800e-01;SOR=0.442;VQSLOD=-4.193e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:16862875_G_A:243,0,108:16862875
chr1	16862876	rs148887192	C	T	1941.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=41.32;MQRankSum=-3.529e+00;QD=28.98;ReadPosRankSum=-4.800e-01;SOR=0.478;VQSLOD=-4.315e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:16862875_G_A:243,0,108:16862875
chr1	16863105	rs80185717	G	C	571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=52.13;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;QD=5.61;ReadPosRankSum=-3.970e-01;SOR=0.055;VQSLOD=-2.886e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,4:30:87:0|1:16863105_G_C:87,0,1120:16863105
chr1	16863106	rs77252511	G	T	571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740e-01;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=52.37;MQRankSum=-8.840e-01;NEGATIVE_TRAIN_SITE;QD=5.45;ReadPosRankSum=-2.060e-01;SOR=0.051;VQSLOD=-2.868e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,4:31:87:0|1:16863105_G_C:87,0,1120:16863105
chr1	16863125	rs61769541	T	C	797.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048e+00;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=54.20;MQRankSum=-5.530e-01;NEGATIVE_TRAIN_SITE;QD=5.54;ReadPosRankSum=-6.700e-02;SOR=0.667;VQSLOD=-3.286e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,6:45:99:132,0,1481
chr1	16863144	.	C	T	513.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173e+00;DP=68;ExcessHet=6.9897;FS=6.478;MQ=56.75;MQRankSum=-1.353e+00;NEGATIVE_TRAIN_SITE;QD=2.52;ReadPosRankSum=1.25;SOR=1.918;VQSLOD=-2.419e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,6:68:99:0|1:16863144_C_T:104,0,2624:16863144
chr1	16863146	.	A	C	799.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.04;DP=70;ExcessHet=6.9897;FS=8.567;MQ=56.73;MQRankSum=-1.120e+00;NEGATIVE_TRAIN_SITE;QD=3.81;ReadPosRankSum=1.01;SOR=2.553;VQSLOD=-2.810e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:63,7:70:99:0|1:16863144_C_T:137,0,2747:16863144
chr1	16863152	.	C	T	838.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DP=78;ExcessHet=6.9897;FS=17.410;MQ=57.11;MQRankSum=-1.038e+00;NEGATIVE_TRAIN_SITE;QD=3.54;ReadPosRankSum=1.46;SOR=3.455;VQSLOD=-4.804e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:70,8:78:99:0|1:16863144_C_T:122,0,2957:16863144
chr1	16863308	rs112689425	G	T	11495.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DB;DP=361;ExcessHet=6.9897;FS=12.076;MQ=56.60;MQRankSum=-9.448e+00;QD=10.55;ReadPosRankSum=-2.534e+00;SOR=1.247;VQSLOD=-5.115e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:293,68:361:99:0|1:16863304_T_C:1992,0,12175:16863304
chr1	16863313	rs76539488	C	T	4295.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531e+00;DB;DP=362;ExcessHet=6.9897;FS=6.359;MQ=56.58;MQRankSum=-7.337e+00;QD=3.92;ReadPosRankSum=0.164;SOR=1.040;VQSLOD=-4.229e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:311,51:362:99:369,0,12789
chr1	16863314	rs74927161	A	G	11923.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DB;DP=362;ExcessHet=6.9897;FS=10.353;MQ=56.56;MQRankSum=-9.660e+00;QD=10.85;ReadPosRankSum=-1.717e+00;SOR=1.070;VQSLOD=-4.845e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:290,72:362:99:0|1:16863304_T_C:2089,0,12041:16863304
chr1	16863328	rs61769543	T	G	10222.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=352;ExcessHet=6.9897;FS=11.336;MQ=56.32;MQRankSum=-9.390e+00;QD=9.55;ReadPosRankSum=0.278;SOR=0.857;VQSLOD=-4.994e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:274,78:352:99:1810,0,7072
chr1	16863398	rs61769545	A	C	7734.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.981e+00;DB;DP=203;ExcessHet=6.9897;FS=7.859;MQ=56.24;MQRankSum=-8.169e+00;QD=10.85;ReadPosRankSum=2.65;SOR=0.346;VQSLOD=-4.654e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:127,76:203:99:1941,0,3721
chr1	16863514	rs79847558	C	T	627.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=52.16;MQRankSum=-2.954e+00;NEGATIVE_TRAIN_SITE;QD=4.76;ReadPosRankSum=0.483;SOR=0.314;VQSLOD=-3.618e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,9:32:99:219,0,738
chr1	16863566	rs202152810	T	C	598.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=49.10;MQRankSum=-3.361e+00;QD=13.02;ReadPosRankSum=-1.380e-01;SOR=1.162;VQSLOD=-3.139e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:215,0,156
chr1	16863578	rs374442462	A	G	510.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=46.32;MQRankSum=-2.515e+00;QD=15.97;ReadPosRankSum=-2.410e-01;SOR=1.329;VQSLOD=-3.072e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,5:10:99:0|1:16863578_A_G:186,0,232:16863578
chr1	16863587	rs368057170	C	T	480.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=45.70;MQRankSum=-2.369e+00;QD=16.58;ReadPosRankSum=-1.029e+00;SOR=1.206;VQSLOD=-3.448e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:16863578_A_G:153,0,235:16863578
chr1	16890283	rs156893	G	T	6136.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=49.42;NEGATIVE_TRAIN_SITE;QD=28.86;SOR=8.714;VQSLOD=2.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1217,96,0
chr1	16890441	rs3863779	C	T	7423.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;DB;DP=387;ExcessHet=6.9897;FS=0.733;MQ=59.04;MQRankSum=-7.794e+00;QD=4.96;ReadPosRankSum=-1.124e+00;SOR=0.530;VQSLOD=-4.866e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:262,125:387:99:2835,0,7569
chr1	16890484	rs12117084	G	C	8826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DB;DP=563;ExcessHet=6.9897;FS=0.000;MQ=59.63;MQRankSum=-4.418e+00;NEGATIVE_TRAIN_SITE;QD=4.03;ReadPosRankSum=0.067;SOR=0.646;VQSLOD=-2.829e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:406,157:563:99:3530,0,11422
chr1	16890644	rs2992339	C	T	16657.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094e+00;DB;DP=518;ExcessHet=6.9897;FS=0.000;MQ=53.46;MQRankSum=6.06;QD=6.94;ReadPosRankSum=-1.960e-01;SOR=0.714;VQSLOD=-4.983e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:337,181:518:99:4386,0,11403
chr1	16890852	rs1932256	A	C	1013.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=33;ExcessHet=6.9897;FS=16.929;MQ=53.27;MQRankSum=-4.865e+00;NEGATIVE_TRAIN_SITE;QD=6.80;ReadPosRankSum=-1.218e+00;SOR=0.103;VQSLOD=-3.981e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,9:33:99:252,0,888
chr1	16891074	rs4111896	T	C	1144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836e+00;DB;DP=18;ExcessHet=6.9897;FS=12.900;MQ=42.79;MQRankSum=-2.804e+00;QD=11.12;ReadPosRankSum=0.534;SOR=0.133;VQSLOD=-4.693e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:262,0,229
chr1	16891158	rs4112523	A	C	1218.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=35;ExcessHet=6.9897;FS=4.471;MQ=44.79;MQRankSum=-1.904e+00;QD=5.04;ReadPosRankSum=-9.870e-01;SOR=0.387;VQSLOD=-3.122e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:435,0,485
chr1	16891243	rs61771012	C	G	14898.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=53;ExcessHet=3.9794;FS=1.868;MQ=49.08;MQRankSum=-3.866e+00;QD=31.63;ReadPosRankSum=-1.944e+00;SOR=0.992;VQSLOD=-3.291e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,35:53:99:977,0,389
chr1	16891485	rs2289551	C	T	11238.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=59;ExcessHet=6.9897;FS=7.865;MQ=47.39;MQRankSum=-8.441e+00;QD=22.75;ReadPosRankSum=-9.360e-01;SOR=1.218;VQSLOD=-3.833e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,32:59:99:1059,0,614
chr1	16891513	.	G	A	399.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930e-01;DP=53;ExcessHet=3.9794;FS=6.413;MQ=49.58;MQRankSum=-2.391e+00;NEGATIVE_TRAIN_SITE;QD=2.73;ReadPosRankSum=-1.550e-01;SOR=1.536;VQSLOD=-3.018e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,11:53:99:258,0,1360
chr1	16891553	.	C	T	191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051e+00;DP=45;ExcessHet=3.0103;FS=12.032;MQ=48.30;MQRankSum=-2.642e+00;QD=4.25;ReadPosRankSum=0.412;SOR=1.186;VQSLOD=-3.973e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,9:45:99:200,0,1191
chr1	16891601	.	T	C	700.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.481e+00;DP=31;ExcessHet=6.9897;FS=0.000;MQ=47.98;MQRankSum=-1.299e+00;QD=3.26;ReadPosRankSum=1.24;SOR=0.634;VQSLOD=-3.911e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,10:31:99:204,0,666
chr1	16891639	.	C	T	148.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388e+00;DP=22;ExcessHet=3.9794;FS=5.112;MQ=51.01;MQRankSum=-1.334e+00;NEGATIVE_TRAIN_SITE;QD=2.74;ReadPosRankSum=0.775;SOR=0.039;VQSLOD=-1.759e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,6:22:99:137,0,632
chr1	16891689	.	A	C	320.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DP=16;ExcessHet=3.9794;FS=0.000;MQ=53.55;MQRankSum=0.273;NEGATIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=0.718;SOR=0.206;VQSLOD=-2.746e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:290,0,282
chr1	16891696	.	T	C	218.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DP=14;ExcessHet=6.9897;FS=0.000;MQ=52.31;MQRankSum=-3.880e-01;NEGATIVE_TRAIN_SITE;QD=3.04;ReadPosRankSum=-3.070e-01;SOR=0.144;VQSLOD=-3.172e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,2:14:37:37,0,460
chr1	16891956	rs3872312	C	T	1205.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=30;ExcessHet=6.9897;FS=4.021;MQ=53.12;MQRankSum=-6.420e-01;NEGATIVE_TRAIN_SITE;QD=4.31;ReadPosRankSum=0.532;SOR=0.177;VQSLOD=-2.145e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,9:30:99:274,0,739
chr1	16892010	rs375255056	T	C	968.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940e+00;DB;DP=69;ExcessHet=3.9794;FS=0.914;MQ=50.43;MQRankSum=-3.030e-01;NEGATIVE_TRAIN_SITE;QD=5.10;ReadPosRankSum=0.499;SOR=0.523;VQSLOD=-3.518e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,18:69:99:442,0,1586
chr1	16892355	.	G	A	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406e+00;DP=15;ExcessHet=3.0103;FS=2.869;MQ=51.77;MQRankSum=0.078;NEGATIVE_TRAIN_SITE;QD=3.62;ReadPosRankSum=-8.660e-01;SOR=0.155;VQSLOD=-2.857e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:63:63,0,442
chr1	16892407	.	A	G	2752.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DP=46;ExcessHet=6.9897;FS=1.000;MQ=52.98;MQRankSum=-1.245e+00;NEGATIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-7.480e-01;SOR=0.696;VQSLOD=-3.144e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,28:46:99:830,0,472
chr1	16892512	.	G	A	54.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060e+00;DP=83;ExcessHet=3.0103;FS=2.818;MQ=54.27;MQRankSum=-3.240e-01;NEGATIVE_TRAIN_SITE;QD=0.65;ReadPosRankSum=1.02;SOR=1.270;VQSLOD=-2.875e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:72,11:83:63:63,0,2413
chr1	16892561	.	C	T	19312.69	PASS	AC=2;AF=1.00;AN=2;DP=91;ExcessHet=3.0103;FS=0.000;MQ=50.00;NEGATIVE_TRAIN_SITE;QD=32.43;SOR=0.716;VQSLOD=-1.777e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3524,273,0
chr1	16892565	rs202086630	G	A	929.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100e-01;DB;DP=87;ExcessHet=3.9794;FS=2.050;MQ=50.09;MQRankSum=0.487;NEGATIVE_TRAIN_SITE;QD=4.60;ReadPosRankSum=-3.800e-01;SOR=0.607;VQSLOD=-3.606e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,26:87:99:533,0,2116
chr1	16892578	.	ACT	A	4424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DP=92;ExcessHet=6.9897;FS=2.034;MQ=50.85;MQRankSum=-4.910e-01;POSITIVE_TRAIN_SITE;QD=8.68;ReadPosRankSum=1.94;SOR=0.901;VQSLOD=1.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:68,24:92:99:803,0,2783
chr1	16892592	.	C	T	395.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609e+00;DP=99;ExcessHet=3.0103;FS=1.452;MQ=51.58;MQRankSum=1.80;NEGATIVE_TRAIN_SITE;QD=3.99;ReadPosRankSum=-2.640e-01;SOR=0.836;VQSLOD=-3.753e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,25:99:99:404,0,2357
chr1	16893033	rs3983170	G	A	20957.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DB;DP=145;ExcessHet=6.9897;FS=0.000;MQ=50.24;MQRankSum=-3.979e+00;NEGATIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=0.294;SOR=0.653;VQSLOD=-3.296e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,117:145:99:3013,0,382
chr1	16893441	rs607117	G	A	7013.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.399e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=52.10;MQRankSum=-2.224e+00;NEGATIVE_TRAIN_SITE;QD=34.72;ReadPosRankSum=0.891;SOR=3.362;VQSLOD=-2.116e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:707,54,0
chr1	16893884	rs61771021	G	A	25181.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.666e+00;DB;DP=287;ExcessHet=6.9897;FS=0.712;MQ=51.44;MQRankSum=0.336;NEGATIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-2.950e-01;SOR=0.764;VQSLOD=-3.160e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:203,84:287:99:2017,0,6113
chr1	16894181	rs3983164	A	G	930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=14;ExcessHet=6.9897;FS=1.747;MQ=47.32;MQRankSum=-2.800e-01;QD=17.56;ReadPosRankSum=-4.330e-01;SOR=1.127;VQSLOD=-3.359e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:248,0,205
chr1	16894289	rs849612	T	C	1499.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812e+00;DB;DP=83;ExcessHet=6.9897;FS=0.000;MQ=50.90;MQRankSum=-3.990e-01;NEGATIVE_TRAIN_SITE;QD=5.03;ReadPosRankSum=-8.760e-01;SOR=0.604;VQSLOD=-3.592e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,27:83:99:711,0,1632
chr1	16894376	rs849613	A	G	2956.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.760e-01;DB;DP=205;ExcessHet=3.9794;FS=0.000;MQ=42.94;MQRankSum=-9.000e-01;QD=6.50;ReadPosRankSum=0.213;SOR=0.690;VQSLOD=-4.590e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,67:205:99:1298,0,3335
chr1	16894664	rs860282	C	T	6800.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.593e+00;DB;DP=75;ExcessHet=6.9897;FS=1.332;MQ=49.09;MQRankSum=-6.200e+00;QD=20.36;ReadPosRankSum=-8.410e-01;SOR=0.837;VQSLOD=-3.983e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,43:75:99:1184,0,1081
chr1	16895276	rs3983186	G	A	375.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e+00;DB;DP=14;ExcessHet=6.9897;FS=2.987;MQ=58.35;MQRankSum=0.668;NEGATIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=-7.090e-01;SOR=0.157;VQSLOD=-1.579e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,4:14:88:88,0,364
chr1	16895392	.	AC	A	1284.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DP=50;ExcessHet=6.9897;FS=0.000;MQ=45.18;MQRankSum=-1.899e+00;QD=5.79;ReadPosRankSum=0.948;SOR=0.735;VQSLOD=0.132;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,22:50:99:607,0,791
chr1	16899903	rs61772300	G	C	400.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=7;ExcessHet=6.9897;FS=2.483;MQ=54.07;MQRankSum=1.03;NEGATIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-3.660e-01;SOR=0.200;VQSLOD=-2.424e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:45:162,0,45
chr1	16902661	rs2985115	C	A	2299.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.596e+00;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=44.62;MQRankSum=-4.948e+00;QD=17.42;ReadPosRankSum=1.40;SOR=0.451;VQSLOD=-4.086e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:275,0,641
chr1	16902856	rs200172966	C	T	1007.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-02;DB;DP=399;ExcessHet=3.9794;FS=2.582;MQ=46.41;MQRankSum=-3.206e+00;QD=1.17;ReadPosRankSum=1.40;SOR=0.958;VQSLOD=-4.237e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:338,61:399:99:473,0,9332
chr1	16902884	rs74630591	T	C	5824.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=355;ExcessHet=6.9897;FS=0.613;MQ=44.26;MQRankSum=-3.617e+00;QD=4.34;ReadPosRankSum=-3.590e-01;SOR=0.773;VQSLOD=-4.554e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:261,94:355:99:1843,0,8413
chr1	16903150	rs61772340	T	C	4612.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=51.13;NEGATIVE_TRAIN_SITE;QD=27.84;SOR=9.490;VQSLOD=3.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:913,66,0
chr1	16903683	rs684166	T	A	9269.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.145e+00;DB;DP=87;ExcessHet=6.9897;FS=8.870;MQ=49.09;MQRankSum=-8.412e+00;QD=22.72;ReadPosRankSum=-1.740e+00;SOR=1.547;VQSLOD=-3.893e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,55:87:99:0|1:16903674_C_T:1997,0,1625:16903674
chr1	16903776	rs371605143	C	G	779.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=204;ExcessHet=3.0103;FS=11.163;MQ=50.05;MQRankSum=-4.744e+00;NEGATIVE_TRAIN_SITE;QD=3.82;ReadPosRankSum=3.02;SOR=0.682;VQSLOD=-4.410e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:172,32:204:99:0|1:16903776_C_G:788,0,8709:16903776
chr1	16903780	rs76381029	C	T	6739.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.002e+00;DB;DP=214;ExcessHet=6.9897;FS=0.584;MQ=50.37;MQRankSum=-1.867e+00;NEGATIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=0.298;SOR=0.621;VQSLOD=-3.548e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,93:214:99:2093,0,3754
chr1	16903781	.	C	T	749.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980e-01;DP=212;ExcessHet=3.0103;FS=13.028;MQ=50.36;MQRankSum=-4.761e+00;NEGATIVE_TRAIN_SITE;QD=3.53;ReadPosRankSum=3.75;SOR=0.808;VQSLOD=-5.169e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:181,31:212:99:0|1:16903776_C_G:758,0,9036:16903776
chr1	16903786	rs141003214	T	C	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.376e+00;DB;DP=218;ExcessHet=3.0103;FS=9.294;MQ=50.23;MQRankSum=-4.635e+00;NEGATIVE_TRAIN_SITE;QD=3.32;ReadPosRankSum=3.73;SOR=0.858;VQSLOD=-4.543e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:187,31:218:99:0|1:16903776_C_G:733,0,9002:16903776
chr1	16904073	rs200108639	C	A	915.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.281e+00;DB;DP=25;ExcessHet=6.9897;FS=13.816;MQ=42.58;MQRankSum=-1.490e+00;QD=8.25;ReadPosRankSum=0.298;SOR=0.033;VQSLOD=-4.880e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:320,0,369
chr1	16904121	rs145966688	T	G	519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=52.24;MQRankSum=-3.290e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=-4.340e-01;SOR=0.340;VQSLOD=-1.620e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:66:66,0,204
chr1	16905641	rs2210667	C	T	292.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e-01;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=42.96;MQRankSum=0.322;QD=4.36;ReadPosRankSum=-2.570e-01;SOR=0.676;VQSLOD=-4.992e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,4:32:32:32,0,836
chr1	16907110	rs77700260	T	C	13004.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.461e+00;DB;DP=114;ExcessHet=6.9897;FS=2.886;MQ=53.60;MQRankSum=-3.984e+00;NEGATIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=-2.221e+00;SOR=0.378;VQSLOD=-2.790e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,83:114:99:2760,0,878
chr1	16907124	rs615115	A	C	19486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.23;DB;DP=149;ExcessHet=6.9897;FS=1.142;MQ=55.14;MQRankSum=-3.268e+00;NEGATIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=-1.056e+00;SOR=0.580;VQSLOD=-2.873e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,112:149:99:3959,0,852
chr1	16907328	rs78540200	G	T	59102.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191e+00;DB;DP=812;ExcessHet=6.9897;FS=2.140;MQ=48.01;MQRankSum=-6.344e+00;QD=20.63;ReadPosRankSum=0.125;SOR=0.512;VQSLOD=-3.925e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:177,635:812:99:16387,0,3078
chr1	16907854	rs9729861	T	A	38700.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.39;DB;DP=475;ExcessHet=6.9897;FS=0.564;MQ=50.02;MQRankSum=-3.475e+00;NEGATIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=0.702;SOR=0.809;VQSLOD=-3.239e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:191,284:475:99:0|1:16907854_T_A:11564,0,7446:16907854
chr1	16907871	rs9728933	C	T	43238.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615e+00;DB;DP=570;ExcessHet=6.9897;FS=0.544;MQ=50.25;MQRankSum=-3.166e+00;NEGATIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-1.310e-01;SOR=0.762;VQSLOD=-3.168e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:211,359:570:99:0|1:16907854_T_A:13231,0,7686:16907854
chr1	16908115	rs647061	A	G	5834.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.770e-01;DB;DP=237;ExcessHet=6.9897;FS=0.000;MQ=55.19;MQRankSum=4.50;NEGATIVE_TRAIN_SITE;QD=5.53;ReadPosRankSum=-1.053e+00;SOR=0.725;VQSLOD=-4.278e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,71:237:99:1752,0,5064
chr1	16908131	.	C	T	5329.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.115e+00;DP=182;ExcessHet=6.9897;FS=1.777;MQ=55.09;MQRankSum=1.22;NEGATIVE_TRAIN_SITE;QD=6.53;ReadPosRankSum=-1.290e+00;SOR=0.548;VQSLOD=-3.383e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,49:182:99:1202,0,4378
chr1	16908169	.	T	C	2443.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.272e+00;DP=103;ExcessHet=3.9794;FS=0.000;MQ=54.07;MQRankSum=4.25;NEGATIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-1.238e+00;SOR=0.578;VQSLOD=-4.237e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,22:103:99:443,0,2867
chr1	16908223	.	T	A	43.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636e+00;DP=36;ExcessHet=3.0103;FS=0.000;MQ=54.02;MQRankSum=-1.962e+00;NEGATIVE_TRAIN_SITE;QD=1.21;ReadPosRankSum=-7.440e-01;SOR=0.050;VQSLOD=-3.379e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,6:36:51:51,0,1120
chr1	16908859	rs368067659	A	T	193.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.090e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=50.35;MQRankSum=1.56;NEGATIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=-3.120e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:16908859_A_T:198,0,227:16908859
chr1	16908864	.	C	A	224.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DP=9;ExcessHet=3.9794;FS=0.000;MQ=50.35;MQRankSum=1.56;NEGATIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=-3.395e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:16908859_A_T:198,0,227:16908859
chr1	16908867	rs643850	C	A	69.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=50.82;MQRankSum=-1.834e+00;NEGATIVE_TRAIN_SITE;QD=2.06;ReadPosRankSum=0.549;SOR=0.223;VQSLOD=-3.503e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:34:34,0,276
chr1	16908883	.	T	A	241.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DP=12;ExcessHet=3.9794;FS=3.647;MQ=51.64;MQRankSum=2.04;NEGATIVE_TRAIN_SITE;QD=7.31;ReadPosRankSum=0.746;SOR=0.097;VQSLOD=-2.298e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,3:12:93:0|1:16908883_T_A:93,0,531:16908883
chr1	16908887	.	T	C	273.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.553e+00;DP=14;ExcessHet=3.9794;FS=3.641;MQ=52.13;MQRankSum=2.16;NEGATIVE_TRAIN_SITE;QD=7.38;ReadPosRankSum=0.00;SOR=0.098;VQSLOD=-2.335e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,3:14:93:0|1:16908883_T_A:93,0,531:16908883
chr1	16908892	.	T	C	374.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.590e-01;DP=18;ExcessHet=3.9794;FS=0.000;MQ=51.42;MQRankSum=0.670;NEGATIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=0.757;SOR=0.446;VQSLOD=-3.219e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,8:18:99:0|1:16908892_T_C:289,0,585:16908892
chr1	16908894	.	A	T	368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DP=22;ExcessHet=3.9794;FS=0.000;MQ=51.70;MQRankSum=0.652;NEGATIVE_TRAIN_SITE;QD=7.51;ReadPosRankSum=0.903;SOR=0.191;VQSLOD=-2.976e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,8:22:99:0|1:16908892_T_C:286,0,622:16908892
chr1	16908903	.	G	C	331.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e+00;DP=25;ExcessHet=3.9794;FS=7.453;MQ=52.56;MQRankSum=0.810;NEGATIVE_TRAIN_SITE;QD=5.81;ReadPosRankSum=-1.084e+00;SOR=0.012;VQSLOD=-1.615e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,6:25:99:128,0,714
chr1	16908914	rs643471	G	A	695.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.364e+00;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=52.66;MQRankSum=1.87;NEGATIVE_TRAIN_SITE;QD=6.21;ReadPosRankSum=1.74;SOR=0.332;VQSLOD=-3.324e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,8:31:99:222,0,827
chr1	16908930	.	T	C	425.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DP=36;ExcessHet=3.9794;FS=0.000;MQ=52.95;MQRankSum=0.261;NEGATIVE_TRAIN_SITE;QD=4.57;ReadPosRankSum=0.942;SOR=0.252;VQSLOD=-3.148e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,9:36:99:233,0,826
chr1	16908989	rs144184209	C	T	810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.334e+00;DB;DP=42;ExcessHet=6.9897;FS=2.180;MQ=49.61;MQRankSum=-1.480e-01;NEGATIVE_TRAIN_SITE;QD=4.66;ReadPosRankSum=-1.132e+00;SOR=1.052;VQSLOD=-3.588e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,7:42:99:155,0,1058
chr1	16909000	rs151092163	C	A	1111.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098e+00;DB;DP=46;ExcessHet=6.9897;FS=1.580;MQ=48.90;MQRankSum=0.037;QD=5.91;ReadPosRankSum=0.358;SOR=0.881;VQSLOD=-3.633e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,16:46:99:377,0,854
chr1	16909052	rs140548913	C	T	5891.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.740e-01;DB;DP=36;ExcessHet=3.0103;FS=6.153;MQ=44.15;MQRankSum=1.51;QD=26.40;ReadPosRankSum=0.415;SOR=0.193;VQSLOD=-3.350e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1263,108,0
chr1	16910392	rs3926654	G	A	632.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=39.83;MQRankSum=-3.880e-01;QD=8.55;ReadPosRankSum=0.498;SOR=0.215;VQSLOD=-4.921e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:284,0,235
chr1	16910441	rs4661840	C	G	110.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=39.96;MQRankSum=0.099;QD=3.81;ReadPosRankSum=-5.770e-01;SOR=0.082;VQSLOD=-5.157e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:82:82,0,226
chr1	16911827	.	C	G	122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DP=18;ExcessHet=3.9794;FS=0.000;MQ=49.57;MQRankSum=-3.094e+00;NEGATIVE_TRAIN_SITE;QD=2.30;ReadPosRankSum=2.00;SOR=0.233;VQSLOD=-4.063e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,3:18:38:38,0,527
chr1	16911943	rs200170371	T	A	3336.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451e+00;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=41.37;MQRankSum=0.981;QD=23.50;ReadPosRankSum=0.703;SOR=0.675;VQSLOD=-5.204e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:608,0,502
chr1	16912330	rs4336845	C	T	1761.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=55.30;MQRankSum=-1.182e+00;NEGATIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=-1.478e+00;SOR=2.948;VQSLOD=-1.606e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:286,0,179
chr1	16914442	.	A	G	2704.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762e+00;DP=83;ExcessHet=3.9794;FS=0.625;MQ=48.55;MQRankSum=-4.564e+00;QD=10.57;ReadPosRankSum=-1.607e+00;SOR=0.767;VQSLOD=-4.065e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,25:83:99:646,0,1767
chr1	16914528	.	T	A	290.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531e+00;DP=12;ExcessHet=6.9897;FS=0.000;MQ=48.75;MQRankSum=-2.568e+00;QD=4.55;ReadPosRankSum=0.348;SOR=0.355;VQSLOD=-3.671e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:141,0,254
chr1	16915357	rs199859875	C	T	894.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-01;DB;DP=20;ExcessHet=6.9897;FS=5.476;MQ=43.80;MQRankSum=-2.345e+00;QD=10.06;ReadPosRankSum=1.85;SOR=1.114;VQSLOD=-3.549e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,3:20:28:28,0,458
chr1	16916515	rs61773622	G	A	1021.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=141;ExcessHet=3.9794;FS=8.168;MQ=46.03;MQRankSum=-4.275e+00;QD=2.32;ReadPosRankSum=-2.009e+00;SOR=1.342;VQSLOD=-4.689e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,30:141:99:433,0,3407
chr1	16916569	rs1855754	A	G	4056.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545e+00;DB;DP=107;ExcessHet=6.9897;FS=9.355;MQ=51.39;MQRankSum=-7.178e+00;QD=7.68;ReadPosRankSum=0.861;SOR=0.300;VQSLOD=-3.863e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,43:107:99:822,0,1794
chr1	16916603	rs11583443	C	A	8513.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=77;ExcessHet=6.9897;FS=2.422;MQ=54.59;MQRankSum=-5.943e+00;QD=20.52;ReadPosRankSum=1.55;SOR=0.487;VQSLOD=-4.173e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,36:77:99:926,0,1076
chr1	16916702	rs4112521	T	C	1798.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=57.10;MQRankSum=-2.617e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=-4.520e-01;SOR=0.778;VQSLOD=-1.381e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:69:227,0,69
chr1	16918255	rs199671438	A	C	987.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.17;DB;DP=116;ExcessHet=6.9897;FS=4.186;MQ=42.72;MQRankSum=0.138;QD=2.02;ReadPosRankSum=-8.580e-01;SOR=1.138;VQSLOD=-4.336e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,23:116:99:508,0,2921
chr1	16918502	rs3925698	A	G	21695.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.730e-01;DB;DP=192;ExcessHet=6.9897;FS=2.223;MQ=54.95;MQRankSum=-6.587e+00;QD=22.37;ReadPosRankSum=-5.700e-01;SOR=0.919;VQSLOD=-4.025e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,119:192:99:3116,0,1726
chr1	16918611	rs4141869	A	C	5052.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.91;DB;DP=49;ExcessHet=6.9897;FS=9.824;MQ=43.72;MQRankSum=-3.922e+00;QD=19.82;ReadPosRankSum=-1.129e+00;SOR=0.263;VQSLOD=-3.776e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,30:49:99:994,0,590
chr1	16918693	rs12134336	A	T	1072.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e+00;DB;DP=37;ExcessHet=6.9897;FS=0.684;MQ=51.57;MQRankSum=0.272;NEGATIVE_TRAIN_SITE;QD=7.01;ReadPosRankSum=0.146;SOR=0.799;VQSLOD=-3.366e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,12:37:99:338,0,806
chr1	16918888	rs3863785	C	G	2203.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=37;ExcessHet=6.9897;FS=9.270;MQ=45.73;MQRankSum=-5.552e+00;QD=13.77;ReadPosRankSum=-1.820e-01;SOR=1.404;VQSLOD=-4.327e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,7:37:99:0|1:16918888_C_G:120,0,989:16918888
chr1	16918895	rs3962486	C	T	471.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.290e-01;DB;DP=36;ExcessHet=3.9794;FS=0.978;MQ=49.24;MQRankSum=2.79;QD=5.68;ReadPosRankSum=0.390;SOR=0.476;VQSLOD=-4.175e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,14:36:99:1|0:16918888_C_G:321,0,636:16918888
chr1	16953881	rs9329439	C	G,T	12397.19	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=6.23;DB;DP=296;ExcessHet=3.9794;FS=1.279;MQ=58.52;MQRankSum=-2.461e+00;QD=9.95;ReadPosRankSum=6.000e-03;SOR=0.862;VQSLOD=-1.317e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:77,132,87:296:99:4150,394,2214,1769,0,3727
chr1	16953993	rs11811556	G	A	909.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.52;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=56.02;MQRankSum=-3.664e+00;NEGATIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=-7.270e-01;SOR=0.907;VQSLOD=-3.598e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:614,0,969
chr1	16969715	rs9329444	A	G	1374.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928e+00;DB;DP=30;ExcessHet=6.9897;FS=1.053;MQ=59.86;MQRankSum=0.00;QD=10.74;ReadPosRankSum=-2.700e-01;SOR=0.829;VQSLOD=4.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:392,0,519
chr1	16971804	rs9729102	A	T	714.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.56;MQRankSum=1.19;NEGATIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=1.96;SOR=1.214;VQSLOD=-7.300e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,11:15:99:427,0,116
chr1	16971866	rs2224812	G	T	3530.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.561e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=59.80;MQRankSum=-7.920e-01;QD=23.54;ReadPosRankSum=0.105;SOR=1.371;VQSLOD=-7.286e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,20:33:99:701,0,471
chr1	16972068	rs1360575	A	G	12348.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;DB;DP=437;ExcessHet=6.9897;FS=0.562;MQ=51.45;MQRankSum=-2.000e+00;NEGATIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=-6.550e-01;SOR=0.758;VQSLOD=-3.462e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:228,209:437:99:5049,0,5613
chr1	16972189	rs9728527	C	A	5135.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.815e+00;DB;DP=301;ExcessHet=3.9794;FS=1.921;MQ=58.57;MQRankSum=0.665;NEGATIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=1.87;SOR=0.858;VQSLOD=-1.530e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:158,143:301:99:3365,0,4172
chr1	16972338	rs60980767	T	C	941.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.960e+00;DB;DP=32;ExcessHet=6.9897;FS=3.955;MQ=56.61;MQRankSum=-4.703e+00;NEGATIVE_TRAIN_SITE;QD=5.61;ReadPosRankSum=1.67;SOR=0.082;VQSLOD=-3.633e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,10:32:99:273,0,749
chr1	16972940	rs1970921	G	A	27478.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=1106;ExcessHet=6.9897;FS=0.000;MQ=59.85;MQRankSum=-1.476e+00;QD=7.45;ReadPosRankSum=0.067;SOR=0.662;VQSLOD=-1.346e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:578,525:1106:99:12456,0,13551
chr1	16973184	rs55828106	G	A	13554.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.137e+00;DB;DP=515;ExcessHet=6.9897;FS=1.208;MQ=55.25;MQRankSum=-1.827e+00;NEGATIVE_TRAIN_SITE;QD=7.07;ReadPosRankSum=0.387;SOR=0.573;VQSLOD=-3.396e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:284,231:515:99:5673,0,8336
chr1	16974021	rs142740321	G	A	11109.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460e-01;DB;DP=519;ExcessHet=6.9897;FS=2.083;MQ=45.28;MQRankSum=-9.570e-01;QD=6.34;ReadPosRankSum=4.62;SOR=0.553;VQSLOD=-5.108e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:316,203:519:99:4398,0,8036
chr1	16974305	.	G	T	212.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211e+00;DP=216;ExcessHet=3.0103;FS=0.742;MQ=53.68;MQRankSum=-2.836e+00;NEGATIVE_TRAIN_SITE;QD=0.98;ReadPosRankSum=-6.490e-01;SOR=0.593;VQSLOD=-4.090e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:185,31:216:99:221,0,5155
chr1	16974666	rs28503658	C	T	12992.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.919e+00;DB;DP=620;ExcessHet=6.9897;FS=3.694;MQ=55.16;MQRankSum=-2.812e+00;NEGATIVE_TRAIN_SITE;QD=5.03;ReadPosRankSum=3.38;SOR=0.451;VQSLOD=-3.971e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:339,281:620:99:6344,0,8491
chr1	16975202	rs28602904	T	C	12845.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019e+00;DB;DP=788;ExcessHet=6.9897;FS=4.807;MQ=51.96;MQRankSum=-5.973e+00;QD=4.40;ReadPosRankSum=-2.270e-01;SOR=0.817;VQSLOD=-3.619e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:601,187:788:99:3045,0,17439
chr1	16976569	rs78288272	G	A	755.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.180e-01;DB;DP=294;ExcessHet=3.9794;FS=5.304;MQ=48.37;MQRankSum=-4.689e+00;QD=1.20;ReadPosRankSum=0.672;SOR=1.178;VQSLOD=-3.634e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:260,34:294:99:167,0,7146
chr1	16976679	rs1065528	G	A	18489.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=431;ExcessHet=6.9897;FS=3.231;MQ=44.34;MQRankSum=1.00;QD=12.66;ReadPosRankSum=-7.600e-01;SOR=0.486;VQSLOD=-4.141e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:281,150:431:99:3064,0,6250
chr1	16976772	rs79425189	G	T	420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=104;ExcessHet=6.9897;FS=2.370;MQ=47.66;MQRankSum=-4.430e+00;QD=0.81;ReadPosRankSum=-3.014e+00;SOR=1.013;VQSLOD=-4.862e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,10:104:38:38,0,2721
chr1	16976807	rs11139	C	T	62.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.550e-01;DB;DP=37;ExcessHet=3.9794;FS=3.251;MQ=53.96;MQRankSum=-3.846e+00;NEGATIVE_TRAIN_SITE;QD=0.34;ReadPosRankSum=-3.190e-01;SOR=1.260;VQSLOD=-3.499e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,5:37:49:49,0,1130
chr1	17022952	rs557690	C	A	36541.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=391;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.29;ReadPosRankSum=0.675;SOR=0.686;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,390:391:99:11410,1153,0
chr1	17023182	rs614461	C	G	16895.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.129e+00;DB;DP=359;ExcessHet=6.9897;FS=0.000;MQ=59.93;MQRankSum=0.00;QD=12.23;ReadPosRankSum=-2.200e-02;SOR=0.693;VQSLOD=4.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:271,88:359:99:1910,0,8403
chr1	17023209	rs112071224	G	A	5377.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288e+00;DB;DP=376;ExcessHet=3.9794;FS=1.307;MQ=59.92;MQRankSum=0.00;QD=6.60;ReadPosRankSum=-1.080e-01;SOR=0.838;VQSLOD=4.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:280,96:376:99:2277,0,9055
chr1	17023511	rs563144	C	A	31157.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.794e+00;DB;DP=325;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.29;ReadPosRankSum=1.47;SOR=0.751;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,243:325:99:7364,0,1923
chr1	17023569	rs563960	T	C	13429.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.741e+00;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=-5.410e-01;NEGATIVE_TRAIN_SITE;QD=32.60;ReadPosRankSum=-8.960e-01;SOR=0.207;VQSLOD=-2.338e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3729,315,0
chr1	17023653	rs12119884	G	A	768.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DB;DP=13;ExcessHet=6.9897;FS=2.209;MQ=60.00;MQRankSum=0.00;QD=7.05;ReadPosRankSum=0.197;SOR=0.189;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,11:13:44:381,0,44
chr1	17025828	rs2610624	G	C	388.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=53.14;MQRankSum=0.137;NEGATIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-7.920e-01;SOR=0.446;VQSLOD=-3.100e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:159,0,188
chr1	17025852	rs537296	T	C	1285.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=14;ExcessHet=3.9794;FS=1.749;MQ=55.48;MQRankSum=-7.920e-01;NEGATIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=0.187;SOR=1.371;VQSLOD=-1.856e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:213,0,248
chr1	17026004	rs9661305	C	G	5988.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=119;ExcessHet=3.9794;FS=0.390;MQ=59.98;MQRankSum=1.27;QD=16.19;ReadPosRankSum=-3.550e-01;SOR=0.737;VQSLOD=0.702;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3711,357,0
chr1	17026243	rs61421147	C	G	519.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683e+00;DB;DP=38;ExcessHet=3.9794;FS=8.092;MQ=60.00;MQRankSum=0.00;QD=6.57;ReadPosRankSum=-1.210e-01;SOR=1.839;VQSLOD=17.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,11:38:99:352,0,1043
chr1	17030325	rs601893	A	G	5039.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=83;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=17.32;ReadPosRankSum=1.89;SOR=0.707;VQSLOD=4.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,67:83:99:1841,0,288
chr1	17033594	rs2093771	G	C	544.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-3.130e-01;SOR=1.179;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:206,0,231
chr1	17033758	rs1736691	A	G	8651.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329e+00;DB;DP=207;ExcessHet=6.9897;FS=1.313;MQ=59.59;MQRankSum=0.00;QD=11.54;ReadPosRankSum=-8.900e-02;SOR=0.538;VQSLOD=2.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:150,57:207:99:1257,0,4471
chr1	17033854	rs2476568	C	T	14090.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=475;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=8.35;ReadPosRankSum=0.396;SOR=0.664;VQSLOD=4.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:362,113:475:99:1933,0,9659
chr1	17034041	rs2743505	T	C	12029.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DB;DP=217;ExcessHet=6.9897;FS=2.553;MQ=59.56;MQRankSum=-5.511e+00;QD=14.42;ReadPosRankSum=0.969;SOR=0.899;VQSLOD=-2.913e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:168,49:217:99:1007,0,5126
chr1	17034285	rs77805593	C	G	993.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197e+00;DB;DP=96;ExcessHet=3.9794;FS=4.724;MQ=59.75;MQRankSum=0.409;NEGATIVE_TRAIN_SITE;QD=4.71;ReadPosRankSum=-7.220e-01;SOR=0.381;VQSLOD=-8.112e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:84,12:96:65:65,0,2761
chr1	17034297	rs9728482	G	A	1170.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.502;DB;DP=110;ExcessHet=3.9794;FS=3.092;MQ=59.77;MQRankSum=0.453;QD=4.98;ReadPosRankSum=-3.560e-01;SOR=0.473;VQSLOD=-5.778e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:93,17:110:99:169,0,2712
chr1	17034728	rs638298	G	C	931.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=10.59;ReadPosRankSum=1.05;SOR=0.410;VQSLOD=4.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,5:28:99:127,0,794
chr1	17044335	rs1755330	T	G	2284.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.99;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.92;ReadPosRankSum=1.35;SOR=2.670;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:513,39,0
chr1	17044457	rs1318341	G	C	10404.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.34;DB;DP=70;ExcessHet=3.0103;FS=1.291;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.68;ReadPosRankSum=0.676;SOR=1.083;VQSLOD=6.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2657,210,0
chr1	17044589	rs944147	G	A	15109.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.689;DB;DP=257;ExcessHet=3.9794;FS=0.000;MQ=59.10;MQRankSum=0.053;QD=14.96;ReadPosRankSum=0.408;SOR=0.707;VQSLOD=-3.918e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,257:257:99:8008,771,0
chr1	17046439	rs9728204	C	A	953.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.395e+00;DB;DP=297;ExcessHet=3.0103;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.21;ReadPosRankSum=0.211;SOR=0.600;VQSLOD=22.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:237,60:297:99:962,0,6886
chr1	17046549	rs1755332	G	A	25517.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=561;ExcessHet=6.9897;FS=0.520;MQ=59.95;MQRankSum=0.00;QD=12.88;ReadPosRankSum=0.160;SOR=0.620;VQSLOD=4.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:160,401:561:99:10196,0,3019
chr1	17046796	rs1755333	G	A	4355.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.85;ReadPosRankSum=0.545;SOR=2.416;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:92:1166,92,0
chr1	17083671	rs1057420	C	G	3542.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.397e+00;DB;DP=160;ExcessHet=6.9897;FS=0.654;MQ=48.24;MQRankSum=0.868;QD=5.41;ReadPosRankSum=0.629;SOR=0.593;VQSLOD=-3.906e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,23:160:99:197,0,3783
chr1	17083685	rs3197973	C	A	3835.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DB;DP=171;ExcessHet=6.9897;FS=1.351;MQ=47.30;MQRankSum=1.02;QD=5.50;ReadPosRankSum=-9.780e-01;SOR=0.552;VQSLOD=-4.326e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:147,24:171:99:208,0,3826
chr1	17083888	rs75141545	C	T	4711.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=145;ExcessHet=6.9897;FS=3.550;MQ=40.57;MQRankSum=-2.373e+00;QD=7.12;ReadPosRankSum=0.955;SOR=0.861;VQSLOD=-4.501e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,16:145:99:130,0,3844
chr1	17084831	rs376787430	C	G	1617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=114;ExcessHet=3.9794;FS=5.239;MQ=48.76;MQRankSum=-1.200e-01;QD=6.74;ReadPosRankSum=1.22;SOR=0.983;VQSLOD=-2.283e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,32:114:99:859,0,2735
chr1	17084948	rs199741699	A	C	3800.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=340;ExcessHet=6.9897;FS=0.000;MQ=51.37;MQRankSum=-1.890e-01;NEGATIVE_TRAIN_SITE;QD=3.38;ReadPosRankSum=-4.000e-02;SOR=0.773;VQSLOD=-3.538e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:248,92:340:99:1977,0,6489
chr1	17085006	rs201784242	C	T	2599.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030e-01;DB;DP=495;ExcessHet=3.0103;FS=0.674;MQ=51.52;MQRankSum=-4.220e-01;NEGATIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=0.197;SOR=0.744;VQSLOD=-3.459e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:353,142:495:99:2608,0,9114
chr1	17085255	rs2281029	A	G	10948.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.51;DB;DP=263;ExcessHet=6.9897;FS=8.763;MQ=51.31;MQRankSum=-9.531e+00;QD=10.10;ReadPosRankSum=-1.871e+00;SOR=1.263;VQSLOD=-5.067e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:199,64:263:99:1574,0,11098
chr1	17085502	rs2329006	T	C	36011.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=842;ExcessHet=6.9897;FS=3.254;MQ=51.53;MQRankSum=-1.696e+00;NEGATIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.316;SOR=0.851;VQSLOD=-2.641e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:677,165:842:99:2950,0,19072
chr1	17085614	rs3891100	G	A	3091.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DB;DP=683;ExcessHet=3.9794;FS=0.000;MQ=53.48;MQRankSum=0.021;NEGATIVE_TRAIN_SITE;QD=2.11;ReadPosRankSum=1.25;SOR=0.756;VQSLOD=-3.540e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:581,102:683:99:1368,0,17597
chr1	17086052	rs1057286	T	C	10806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=43.34;POSITIVE_TRAIN_SITE;QD=33.56;SOR=1.654;VQSLOD=-2.532e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3859,362,0
chr1	17087365	rs2446556	C	G	76536.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.72;DB;DP=683;ExcessHet=6.9897;FS=1.380;MQ=58.69;MQRankSum=-3.070e-01;NEGATIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=2.21;SOR=0.859;VQSLOD=-1.034e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:177,506:683:99:16822,0,3883
chr1	17087682	rs9725203	A	G	7147.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.881e+00;DB;DP=202;ExcessHet=6.9897;FS=0.000;MQ=54.60;MQRankSum=-4.210e-01;NEGATIVE_TRAIN_SITE;QD=7.35;ReadPosRankSum=-4.680e-01;SOR=0.582;VQSLOD=-3.185e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:159,43:202:99:1022,0,5538
chr1	17197331	rs61768105	G	A	660.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=41.15;MQRankSum=0.379;QD=13.22;ReadPosRankSum=-3.800e-01;SOR=0.378;VQSLOD=-5.032e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:194,0,366
chr1	17197357	rs200110822	G	A	1935.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743e+00;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=39.51;MQRankSum=-1.529e+00;QD=25.47;ReadPosRankSum=0.095;SOR=2.365;VQSLOD=-4.689e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,18:25:99:599,0,221
chr1	17197409	rs201203798	G	A	137.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=52.63;MQRankSum=0.108;NEGATIVE_TRAIN_SITE;QD=1.33;ReadPosRankSum=2.03;SOR=0.201;VQSLOD=-3.490e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,7:43:91:0|1:17197409_G_A:91,0,1556:17197409
chr1	17197418	rs368380382	T	C	69.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=53.28;MQRankSum=-3.700e-01;NEGATIVE_TRAIN_SITE;QD=0.60;ReadPosRankSum=1.75;SOR=0.475;VQSLOD=-3.754e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,6:49:38:0|1:17197409_G_A:38,0,1725:17197409
chr1	17197501	rs200315424	T	C	529.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=157;ExcessHet=6.9897;FS=9.038;MQ=52.99;MQRankSum=0.427;NEGATIVE_TRAIN_SITE;QD=1.01;ReadPosRankSum=-1.961e+00;SOR=2.286;VQSLOD=-3.577e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:145,12:157:99:136,0,5111
chr1	17197525	rs72907888	T	G	1615.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.140e-01;DB;DP=204;ExcessHet=6.9897;FS=14.301;MQ=52.90;MQRankSum=2.18;NEGATIVE_TRAIN_SITE;QD=2.25;ReadPosRankSum=-1.916e+00;SOR=2.348;VQSLOD=-4.493e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:182,22:204:99:283,0,6124
chr1	17197571	rs76372883	G	A	9396.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=386;ExcessHet=6.9897;FS=6.161;MQ=53.82;MQRankSum=6.48;QD=7.60;ReadPosRankSum=-2.484e+00;SOR=1.237;VQSLOD=-3.666e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:288,98:386:99:3098,0,9906
chr1	17197595	rs201521253	A	C	11740.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=464;ExcessHet=6.9897;FS=4.721;MQ=54.04;MQRankSum=8.16;QD=7.97;ReadPosRankSum=-1.570e-01;SOR=1.107;VQSLOD=-4.848e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:330,134:464:99:3734,0,9073
chr1	17197609	rs150993810	T	C	18070.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.613e+00;DB;DP=521;ExcessHet=6.9897;FS=3.564;MQ=54.58;MQRankSum=8.17;QD=11.09;ReadPosRankSum=1.68;SOR=0.983;VQSLOD=-5.050e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:371,150:521:99:0|1:17197609_T_C:5305,0,15076:17197609
chr1	17197610	rs200754171	G	A	75.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299e+00;DB;DP=523;ExcessHet=3.0103;FS=4.731;MQ=54.65;MQRankSum=4.06;NEGATIVE_TRAIN_SITE;QD=0.14;ReadPosRankSum=1.86;SOR=1.228;VQSLOD=-2.528e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:469,54:523:83:83,0,17997
chr1	17197615	rs146936960	C	A	18801.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.787e+00;DB;DP=531;ExcessHet=6.9897;FS=3.561;MQ=54.81;MQRankSum=7.96;QD=11.29;ReadPosRankSum=2.20;SOR=0.994;VQSLOD=-4.834e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:374,157:531:99:0|1:17197609_T_C:5492,0,15453:17197609
chr1	17197619	rs113661539	A	G	18875.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.749e+00;DB;DP=542;ExcessHet=6.9897;FS=3.519;MQ=54.93;MQRankSum=7.93;QD=11.25;ReadPosRankSum=2.40;SOR=0.977;VQSLOD=-4.827e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:381,161:542:99:0|1:17197609_T_C:5538,0,15378:17197609
chr1	17197666	rs74055933	T	C	350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910e-01;DB;DP=531;ExcessHet=3.0103;FS=7.386;MQ=55.80;MQRankSum=3.67;NEGATIVE_TRAIN_SITE;QD=0.66;ReadPosRankSum=1.86;SOR=1.065;VQSLOD=-1.570e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:458,73:531:99:359,0,16616
chr1	17197690	rs72642967	T	G	16980.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487e+00;DB;DP=465;ExcessHet=6.9897;FS=1.886;MQ=56.12;MQRankSum=6.55;QD=11.78;ReadPosRankSum=-4.400e-02;SOR=0.540;VQSLOD=-4.589e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:311,154:465:99:0|1:17197690_T_G:5450,0,12587:17197690
chr1	17197694	rs72642969	G	A	16648.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.814e+00;DB;DP=456;ExcessHet=6.9897;FS=1.907;MQ=56.13;MQRankSum=6.29;QD=11.82;ReadPosRankSum=0.263;SOR=0.520;VQSLOD=-4.356e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:306,150:456:99:0|1:17197690_T_G:5330,0,12490:17197690
chr1	17197710	rs114564385	G	C	13592.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=413;ExcessHet=6.9897;FS=1.989;MQ=56.14;MQRankSum=5.60;QD=10.85;ReadPosRankSum=0.393;SOR=0.530;VQSLOD=-3.995e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:281,132:413:99:0|1:17197710_G_C:4594,0,11052:17197710
chr1	17197715	rs202012907	G	A	13235.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.698e+00;DB;DP=386;ExcessHet=6.9897;FS=2.863;MQ=56.27;MQRankSum=5.05;QD=11.24;ReadPosRankSum=0.014;SOR=0.492;VQSLOD=-3.515e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:264,122:386:99:0|1:17197710_G_C:4467,0,10940:17197710
chr1	17197722	.	G	A	862.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=346;ExcessHet=3.0103;FS=0.639;MQ=56.15;MQRankSum=3.33;NEGATIVE_TRAIN_SITE;QD=2.49;ReadPosRankSum=1.05;SOR=0.748;VQSLOD=-3.672e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:302,44:346:99:871,0,12837
chr1	17197725	rs75030124	C	G	7571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080e+00;DB;DP=333;ExcessHet=6.9897;FS=1.484;MQ=56.56;MQRankSum=3.65;NEGATIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=-1.800e-01;SOR=0.522;VQSLOD=-3.459e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:275,58:333:99:1696,0,11637
chr1	17197758	rs143100028	C	G	5822.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.420e-01;DB;DP=193;ExcessHet=6.9897;FS=1.777;MQ=57.27;MQRankSum=0.897;NEGATIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=-1.186e+00;SOR=0.475;VQSLOD=-2.237e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:133,60:193:99:0|1:17197758_C_G:2036,0,5302:17197758
chr1	17197764	.	G	A	4621.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=181;ExcessHet=6.9897;FS=1.993;MQ=57.08;MQRankSum=1.23;NEGATIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=-9.580e-01;SOR=0.450;VQSLOD=-2.528e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:127,31:181:99:1156,0,5310
chr1	17197771	rs139655267	G	A	5021.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=163;ExcessHet=6.9897;FS=2.163;MQ=56.81;MQRankSum=0.925;NEGATIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-8.300e-01;SOR=0.407;VQSLOD=-2.614e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:114,49:163:99:0|1:17197758_C_G:1741,0,4846:17197758
chr1	17197777	rs149102001	T	G	4388.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.62;DB;DP=150;ExcessHet=6.9897;FS=1.151;MQ=56.52;MQRankSum=1.09;NEGATIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=-3.110e-01;SOR=0.483;VQSLOD=-2.761e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:110,40:150:99:0|1:17197758_C_G:1474,0,4489:17197758
chr1	17197779	rs138448635	G	A	4025.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.988e+00;DB;DP=148;ExcessHet=6.9897;FS=1.200;MQ=56.42;MQRankSum=1.41;NEGATIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=-8.640e-01;SOR=0.487;VQSLOD=-2.992e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:109,39:148:99:0|1:17197758_C_G:1348,0,4498:17197758
chr1	17197798	rs112783082	A	G	2365.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757e+00;DB;DP=99;ExcessHet=6.9897;FS=3.364;MQ=55.22;MQRankSum=2.04;NEGATIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=-5.220e-01;SOR=1.428;VQSLOD=-2.095e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,25:99:99:827,0,2830
chr1	17197801	rs1755367	C	G	3251.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.171e+00;DB;DP=95;ExcessHet=6.9897;FS=0.000;MQ=55.04;MQRankSum=-5.012e+00;NEGATIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-6.470e-01;SOR=0.745;VQSLOD=-4.040e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,39:95:99:1211,0,2138
chr1	17197817	rs143935929	C	A	2065.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595e+00;DB;DP=68;ExcessHet=6.9897;FS=1.768;MQ=54.34;MQRankSum=1.44;NEGATIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=0.223;SOR=0.332;VQSLOD=-2.894e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:53,15:68:99:0|1:17197817_C_A:551,0,2172:17197817
chr1	17197818	rs201954177	C	G	2068.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.17;DB;DP=65;ExcessHet=6.9897;FS=1.790;MQ=54.35;MQRankSum=1.15;NEGATIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.593;SOR=0.324;VQSLOD=-2.827e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,14:65:99:0|1:17197817_C_A:554,0,2151:17197817
chr1	17197859	rs61768107	G	A	1173.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.156e+00;DB;DP=37;ExcessHet=6.9897;FS=4.773;MQ=53.03;MQRankSum=-5.560e-01;NEGATIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=1.28;SOR=0.125;VQSLOD=-1.551e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,9:37:99:240,0,1022
chr1	17248500	rs6683035	A	G	2950.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188e+00;DB;DP=79;ExcessHet=6.9897;FS=0.515;MQ=60.00;MQRankSum=0.00;QD=13.17;ReadPosRankSum=0.079;SOR=0.647;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1069,0,817
chr1	17248532	rs6586566	A	G	8639.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.10;SOR=1.074;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3145,323,0
chr1	17248618	rs193268849	G	A	343.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DB;DP=109;ExcessHet=3.0103;FS=0.884;MQ=60.00;MQRankSum=0.00;QD=3.15;ReadPosRankSum=0.884;SOR=0.556;VQSLOD=20.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:86,23:109:99:352,0,2259
chr1	17248797	rs11203422	G	A	521.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.550e-01;DB;DP=8;ExcessHet=6.9897;FS=1.547;MQ=60.00;MQRankSum=0.00;QD=14.91;ReadPosRankSum=0.144;SOR=1.085;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,144
chr1	17249395	rs6586567	A	G	9215.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=133;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.26;ReadPosRankSum=-7.200e-02;SOR=0.654;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,62:133:99:1808,0,2150
chr1	17250496	rs12084162	T	C	33.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.32;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:40,0,32
chr1	17250573	rs3936146	T	C	1507.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=3.855;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:476,39,0
chr1	17250650	rs60010630	C	T	1043.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.43;ReadPosRankSum=0.092;SOR=0.800;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:609,0,339
chr1	17250762	rs58609892	G	C	3246.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.970e-01;DB;DP=93;ExcessHet=6.9897;FS=2.752;MQ=60.00;MQRankSum=0.00;QD=12.25;ReadPosRankSum=-9.170e-01;SOR=0.548;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,48:93:99:1170,0,1205
chr1	17250836	rs57174186	A	G	4642.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=110;ExcessHet=6.9897;FS=0.794;MQ=60.00;MQRankSum=0.00;QD=12.45;ReadPosRankSum=-4.560e-01;SOR=0.759;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,47:110:99:1207,0,1829
chr1	17251055	rs9435703	C	T	7349.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=221;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.33;ReadPosRankSum=0.548;SOR=0.674;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,102:221:99:2394,0,2740
chr1	17251409	rs11800720	C	T	116.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=5;ExcessHet=3.9794;FS=3.123;MQ=60.00;MQRankSum=0.00;QD=8.96;ReadPosRankSum=0.414;SOR=2.030;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:35:35,0,80
chr1	17256313	rs9435710	G	A	884.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=13.83;ReadPosRankSum=1.23;SOR=0.460;VQSLOD=4.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,6:19:99:194,0,434
chr1	17257187	rs144414935	G	GTCCGAGGGAGCACTC	2580.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DB;DP=53;ExcessHet=3.9794;FS=5.098;MQ=60.00;MQRankSum=0.00;QD=24.57;ReadPosRankSum=-5.620e-01;SOR=0.203;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,25:53:99:928,0,4205
chr1	17262942	rs7529769	G	T	1678.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.827e+00;DB;DP=28;ExcessHet=6.9897;FS=9.347;MQ=60.00;MQRankSum=0.00;QD=19.75;ReadPosRankSum=0.532;SOR=3.398;VQSLOD=11.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,10:28:99:0|1:17262942_G_T:363,0,1736:17262942
chr1	17262944	rs7521985	A	G	1769.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.16;DB;DP=29;ExcessHet=6.9897;FS=12.501;MQ=60.00;MQRankSum=0.00;QD=19.89;ReadPosRankSum=0.754;SOR=3.702;VQSLOD=10.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,10:29:99:0|1:17262942_G_T:398,0,1767:17262942
chr1	17262953	rs7521989	A	G	1872.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.78;DB;DP=31;ExcessHet=6.9897;FS=15.398;MQ=60.00;MQRankSum=0.00;QD=18.54;ReadPosRankSum=0.778;SOR=3.872;VQSLOD=10.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,10:31:99:0|1:17262942_G_T:392,0,1837:17262942
chr1	17264863	rs4275496	A	G	560.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=14;ExcessHet=6.9897;FS=2.270;MQ=60.00;MQRankSum=0.00;QD=15.58;ReadPosRankSum=-8.790e-01;SOR=1.429;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:228,0,170
chr1	17264920	rs4463721	C	T	1160.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353e+00;DB;DP=37;ExcessHet=6.9897;FS=0.802;MQ=60.00;MQRankSum=0.00;QD=11.85;ReadPosRankSum=0.129;SOR=0.793;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:414,0,610
chr1	17264939	rs4558023	T	C	1429.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391e+00;DB;DP=45;ExcessHet=6.9897;FS=1.462;MQ=60.00;MQRankSum=0.00;QD=11.53;ReadPosRankSum=0.158;SOR=0.556;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:459,0,671
chr1	17265171	rs4269814	A	G	2783.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=71;ExcessHet=6.9897;FS=15.312;MQ=60.00;MQRankSum=0.00;QD=16.98;ReadPosRankSum=-1.783e+00;SOR=1.690;VQSLOD=10.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,39:71:99:1119,0,972
chr1	17265327	rs4269813	A	G	8963.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=276;ExcessHet=6.9897;FS=4.114;MQ=60.00;MQRankSum=0.00;QD=12.16;ReadPosRankSum=-8.790e-01;SOR=1.003;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,124:276:99:2937,0,3514
chr1	17265366	rs4269812	C	G	10890.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=329;ExcessHet=6.9897;FS=1.108;MQ=60.00;MQRankSum=0.00;QD=12.01;ReadPosRankSum=-2.141e+00;SOR=0.810;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:163,166:329:99:4448,0,3665
chr1	17265560	rs9435793	C	T	3908.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499e+00;DB;DP=103;ExcessHet=6.9897;FS=2.461;MQ=59.85;MQRankSum=-7.800e-01;QD=14.70;ReadPosRankSum=0.373;SOR=0.887;VQSLOD=0.525;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,59:103:99:1742,0,1150
chr1	17266357	rs112681315	C	A	155.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753e+00;DB;DP=18;ExcessHet=3.0103;FS=2.772;MQ=60.00;MQRankSum=0.00;QD=8.63;ReadPosRankSum=0.635;SOR=0.124;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:164,0,360
chr1	17266536	rs9435714	G	C	3129.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DB;DP=91;ExcessHet=6.9897;FS=3.282;MQ=59.89;MQRankSum=0.00;QD=10.72;ReadPosRankSum=-1.500e-02;SOR=0.512;VQSLOD=4.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,52:91:99:1226,0,885
chr1	17267302	rs6586577	A	G	4063.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;DB;DP=166;ExcessHet=6.9897;FS=1.787;MQ=59.99;MQRankSum=0.00;QD=9.45;ReadPosRankSum=-7.960e-01;SOR=0.840;VQSLOD=4.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,74:166:99:1677,0,2245
chr1	17267496	rs6586578	C	T	1121.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.84;DB;DP=48;ExcessHet=6.9897;FS=2.710;MQ=59.88;MQRankSum=0.00;QD=10.58;ReadPosRankSum=0.274;SOR=1.274;VQSLOD=4.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,16:48:99:470,0,931
chr1	17270289	rs12025116	G	A	883.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965e+00;DB;DP=22;ExcessHet=3.9794;FS=2.866;MQ=59.51;MQRankSum=0.00;QD=21.04;ReadPosRankSum=0.455;SOR=0.215;VQSLOD=0.880;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,12:22:99:392,0,370
chr1	17270498	rs9435717	T	G	6649.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.200e-01;DB;DP=165;ExcessHet=6.9897;FS=2.450;MQ=59.77;MQRankSum=-1.902e+00;QD=13.97;ReadPosRankSum=-4.520e-01;SOR=0.883;VQSLOD=-6.282e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:75,90:165:99:2329,0,1905
chr1	17270751	rs12025984	G	A	1465.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.990e-01;DB;DP=167;ExcessHet=3.9794;FS=1.626;MQ=60.00;MQRankSum=0.00;QD=5.00;ReadPosRankSum=0.744;SOR=0.571;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,38:167:99:622,0,3465
chr1	17270845	.	C	CG	2986.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DP=63;ExcessHet=6.9897;FS=4.433;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-1.027e+00;SOR=1.011;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,34:63:99:1161,0,969
chr1	17273396	rs7537468	A	G	5407.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=180;ExcessHet=6.9897;FS=1.156;MQ=60.00;MQRankSum=0.00;QD=10.13;ReadPosRankSum=-1.100e-02;SOR=0.574;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,86:180:99:2244,0,2144
chr1	17273444	rs7545185	G	A	3383.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930e+00;DB;DP=114;ExcessHet=6.9897;FS=3.044;MQ=60.00;MQRankSum=0.00;QD=10.61;ReadPosRankSum=0.071;SOR=0.514;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,52:114:99:1451,0,1784
chr1	17273493	rs7537563	A	C	2634.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=50;ExcessHet=6.9897;FS=1.404;MQ=60.00;MQRankSum=0.00;QD=15.32;ReadPosRankSum=0.155;SOR=0.857;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:776,0,771
chr1	17273694	rs3983221	A	G	394.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=3;ExcessHet=3.0103;FS=2.963;MQ=58.80;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=0.524;SOR=0.180;VQSLOD=-1.405e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	17275054	rs6698564	G	C	1120.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.306e+00;DB;DP=32;ExcessHet=6.9897;FS=7.060;MQ=60.00;MQRankSum=0.00;QD=11.44;ReadPosRankSum=-5.740e-01;SOR=0.215;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:422,0,595
chr1	17275072	rs6690301	A	G	793.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=20;ExcessHet=6.9897;FS=1.573;MQ=60.00;MQRankSum=0.00;QD=16.53;ReadPosRankSum=0.230;SOR=1.040;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:284,0,336
chr1	17280735	rs140178093	G	A	46.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.990e-01;DB;DP=17;ExcessHet=3.0103;FS=2.667;MQ=55.08;MQRankSum=-8.030e-01;NEGATIVE_TRAIN_SITE;QD=2.72;ReadPosRankSum=-2.830e-01;SOR=1.460;VQSLOD=-2.453e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:55:55,0,404
chr1	17281003	rs2076606	T	C	1750.04	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.02;ReadPosRankSum=1.02;SOR=0.990;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:929,81,0
chr1	17287414	rs2273113	T	C	794.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=1.07;SOR=0.941;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:64:147,0,64
chr1	17295679	rs4920574	T	C	8247.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.12;SOR=1.283;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2875,267,0
chr1	17297289	rs9435656	C	T	663.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=3.611;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:314,27,0
chr1	17299014	rs6661019	A	C	4334.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.76;SOR=8.086;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1255,87,0
chr1	17301448	rs2235933	C	T	851.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=27;ExcessHet=3.9794;FS=6.274;MQ=40.82;MQRankSum=1.85;QD=16.06;ReadPosRankSum=-5.390e-01;SOR=0.085;VQSLOD=-3.928e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:432,0,504
chr1	17301672	rs761423	T	C	3099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=80;ExcessHet=6.9897;FS=2.174;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=1.11;SOR=0.566;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,37:80:99:957,0,1119
chr1	17301780	rs761422	A	G	2619.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=64;ExcessHet=6.9897;FS=3.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.322;SOR=0.472;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,26:64:99:613,0,996
chr1	17301900	rs3830850	AGACAGAACCTGGCACGGGAGCCCG	A	537.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=22;ExcessHet=3.9794;FS=2.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=1.41;SOR=1.066;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,9:22:99:326,0,2465
chr1	17303589	rs2235932	C	T	6948.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DB;DP=200;ExcessHet=6.9897;FS=1.104;MQ=59.99;MQRankSum=-1.037e+00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=1.21;SOR=0.796;VQSLOD=1.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:111,89:200:99:2142,0,2730
chr1	17303792	rs4920588	C	T	1961.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.861e+00;DB;DP=22;ExcessHet=3.0103;FS=4.213;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=-7.130e-01;SOR=1.814;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:815,66,0
chr1	17312743	rs3170740	C	T	1986.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=52;ExcessHet=6.9897;FS=4.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.477;SOR=0.421;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:703,0,713
chr1	17313157	rs2076605	G	A	2683.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.155e+00;DB;DP=45;ExcessHet=6.9897;FS=1.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-7.870e-01;SOR=0.451;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:744,0,717
chr1	17313244	rs143483351	CCCCAGGGCTCCT	C	796.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=26;ExcessHet=3.9794;FS=1.149;MQ=60.00;MQRankSum=0.00;QD=17.31;ReadPosRankSum=0.770;SOR=0.604;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,12:26:99:462,0,541
chr1	17313343	rs9435659	G	A	2503.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=54;ExcessHet=6.9897;FS=0.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-6.130e-01;SOR=0.760;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,30:54:99:777,0,595
chr1	17313454	rs7531163	G	A	1856.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949e+00;DB;DP=79;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.883;SOR=0.683;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,36:79:99:1014,0,1468
chr1	17313654	rs761421	C	T	7547.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.129e+00;DB;DP=185;ExcessHet=6.9897;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.106;SOR=0.591;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,108:185:99:2669,0,2084
chr1	17314702	rs3738815	C	T	6510.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.42;DB;DP=251;ExcessHet=3.9794;FS=1.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.371;SOR=0.836;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:131,120:251:99:3329,0,3165
chr1	17314942	rs9435662	G	A	7562.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004e+00;DB;DP=229;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.328;SOR=0.638;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,96:229:99:2305,0,3591
chr1	17318065	rs2076604	T	C	976.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267e+00;DB;DP=17;ExcessHet=3.9794;FS=4.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.623;SOR=2.704;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:405,0,204
chr1	17319011	rs2076603	G	A	9049.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.180e-01;DB;DP=198;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-3.290e-01;SOR=0.714;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,94:198:99:2586,0,3031
chr1	17319287	rs4920608	C	T	1338.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900e+00;DB;DP=38;ExcessHet=6.9897;FS=4.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.226;SOR=1.213;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,12:38:99:303,0,659
chr1	17323198	rs2076602	A	T	257.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=0.525;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
chr1	17323449	rs9435736	T	C	1138.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.323e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=-6.450e-01;SOR=1.280;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:382,30,0
chr1	17323929	rs138570168	A	G	35.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=17.76;SOR=0.693;VQSLOD=13.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	17328200	rs6657613	A	T	189.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=-1.383e+00;SOR=0.859;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
chr1	17330453	rs2076601	A	G	177.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=4.7712;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.524;SOR=1.108;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,75
chr1	17331676	rs3738814	A	G	3738.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=102;ExcessHet=6.9897;FS=0.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-1.380e-01;SOR=0.776;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,52:102:99:1458,0,1148
chr1	17338460	rs56047197	G	A	241.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=-2.530e-01;SOR=2.093;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:114,0,30
chr1	17353988	rs11203282	T	G	505.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=-1.282e+00;SOR=0.859;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:57:154,0,57
chr1	17355174	rs200973284	C	A	593.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DB;DP=57;ExcessHet=3.0103;FS=3.679;MQ=60.00;MQRankSum=0.00;QD=10.41;ReadPosRankSum=-1.787e+00;SOR=0.905;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,26:57:99:602,0,704
chr1	17355218	rs11541235	A	G	792.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-02;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.17;ReadPosRankSum=-6.360e-01;SOR=0.719;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,30:49:99:801,0,445
chr1	17359386	rs10887990	T	C	1061.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990e-01;DB;DP=23;ExcessHet=6.9897;FS=2.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-7.050e-01;SOR=1.095;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:254,0,472
chr1	17359676	rs1022580	C	A	8510.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.12;SOR=1.457;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2509,237,0
chr1	17371152	rs12073028	T	C	867.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-02;DB;DP=13;ExcessHet=6.9897;FS=5.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=-3.030e-01;SOR=2.139;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:209,0,176
chr1	17371494	rs9435745	C	T	622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=0.703;SOR=0.428;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:99:256,0,101
chr1	17380497	rs2746462	G	T	7593.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.21;SOR=1.870;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2603,240,0
chr1	17395480	rs2076599	G	A	5418.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=73;ExcessHet=3.9794;FS=2.655;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=1.06;SOR=1.040;VQSLOD=6.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,34:73:99:791,0,1093
chr1	17395521	rs2076598	G	A	9712.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=181;ExcessHet=3.9794;FS=2.784;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.233;SOR=0.531;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,85:181:99:1914,0,2373
chr1	17396408	rs6701620	T	C	1338.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.74;SOR=5.610;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:409,30,0
chr1	17396498	rs2076596	T	C	2352.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DB;DP=33;ExcessHet=3.9794;FS=4.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=-1.091e+00;SOR=0.264;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:498,0,482
chr1	17396703	rs2076595	T	C	9796.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=138;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=1.81;SOR=0.718;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,64:138:99:1721,0,1672
chr1	17396876	rs2076594	C	A	1810.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=1.06;SOR=0.902;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:245,0,256
chr1	17397704	rs2016693	A	C	990.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=1.82;SOR=0.914;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,12:14:7:432,0,7
chr1	17398066	rs875219	G	C	4748.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=54;ExcessHet=3.9794;FS=1.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.06;ReadPosRankSum=-2.080e-01;SOR=0.525;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,27:54:99:0|1:17398066_G_C:1052,0,1599:17398066
chr1	17398069	rs875218	T	C	4683.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;DB;DP=53;ExcessHet=3.9794;FS=2.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=-4.450e-01;SOR=0.496;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,27:53:99:0|1:17398066_G_C:1055,0,1578:17398066
chr1	17401137	rs2295051	T	C	195.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.58;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:78,0,31
chr1	17401283	rs3818041	C	T	2854.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=33;ExcessHet=3.9794;FS=2.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=0.400;SOR=1.132;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:493,0,528
chr1	17401790	rs3818039	A	C	380.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.70;ReadPosRankSum=0.842;SOR=0.368;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:141,0,64
chr1	17401805	rs3818038	G	A	461.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.96;ReadPosRankSum=0.328;SOR=0.275;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:17401805_G_A:159,0,153:17401805
chr1	17401815	rs3818037	A	G	498.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.23;ReadPosRankSum=0.652;SOR=0.330;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:17401805_G_A:159,0,153:17401805
chr1	17401848	rs3818036	T	C	653.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260e-01;DB;DP=11;ExcessHet=3.0103;FS=2.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.41;ReadPosRankSum=0.175;SOR=0.252;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:169,0,206
chr1	17402116	rs3818035	G	T	10336.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=188;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=-5.780e-01;SOR=0.707;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,91:188:99:2529,0,2578
chr1	17402135	rs3818034	T	C	10619.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715e+00;DB;DP=211;ExcessHet=3.9794;FS=0.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-1.220e+00;SOR=0.786;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,101:211:99:2566,0,2959
chr1	17402159	rs3818033	G	A	11855.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=227;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=0.194;SOR=0.675;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,106:227:99:2727,0,3016
chr1	17402255	rs3818032	C	T	15922.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e-01;DB;DP=277;ExcessHet=3.9794;FS=1.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.717;SOR=0.640;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:147,130:277:99:3194,0,3785
chr1	17402347	rs2647205	C	T	23702.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=1.190;VQSLOD=19.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,253:253:99:7515,756,0
chr1	17402418	rs3818031	A	G	7921.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.01;DB;DP=128;ExcessHet=3.9794;FS=1.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=0.248;SOR=0.595;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,55:128:99:1499,0,2834
chr1	17402420	rs2647204	A	G	3960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.000e-03;DB;DP=122;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.822;SOR=0.689;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,70:122:99:1982,0,2054
chr1	17402566	rs12138566	T	C	856.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=0.272;SOR=1.292;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:40:40,0,222
chr1	17405809	rs2057096	G	A	5356.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=93;ExcessHet=3.9794;FS=0.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-5.060e-01;SOR=0.649;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,41:93:99:1002,0,1257
chr1	17405916	rs2057095	C	T	5505.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932e+00;DB;DP=59;ExcessHet=3.9794;FS=1.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=1.12;SOR=0.797;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,30:59:99:0|1:17405916_C_T:994,0,982:17405916
chr1	17405949	rs2057094	C	T	4391.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091e+00;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=0.094;SOR=0.675;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,19:36:99:0|1:17405916_C_T:717,0,668:17405916
chr1	17406015	rs2057093	C	T	2340.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=3.841;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:725,57,0
chr1	17406045	rs2057092	C	T	912.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299e+00;DB;DP=11;ExcessHet=3.9794;FS=4.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=-2.630e-01;SOR=2.683;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:173,0,231
chr1	17409017	rs2076617	G	A	923.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e-01;DB;DP=33;ExcessHet=3.9794;FS=8.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-1.010e+00;SOR=0.166;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:459,0,448
chr1	17409241	rs2235925	G	A	1263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.470e-01;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.673;SOR=0.732;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,28:61:99:719,0,915
chr1	17409382	rs2647187	T	C	584.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=1.20;SOR=0.446;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:107,0,146
chr1	17410364	rs1883913	G	A	5402.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DB;DP=115;ExcessHet=3.9794;FS=5.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=1.11;SOR=1.011;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,60:115:99:1432,0,1273
chr1	17410557	rs730387	G	A	133.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:73,0,37
chr1	17413121	rs2076615	A	C	1153.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-3.230e-01;SOR=0.671;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1162,0,799
chr1	17418883	rs2647184	A	G	8827.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.61;SOR=1.845;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,73:73:99:1|1:17418883_A_G:2749,225,0:17418883
chr1	17418894	rs2273111	A	G	5362.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=77;ExcessHet=3.9794;FS=1.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=0.206;SOR=0.836;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,36:77:99:0|1:17418883_A_G:919,0,998:17418883
chr1	17419024	rs11203297	G	A	1329.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396e+00;DB;DP=119;ExcessHet=3.0103;FS=2.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=3.000e-03;SOR=0.695;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,57:119:99:1338,0,1590
chr1	17419066	rs11203298	T	C	6975.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=104;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-1.600e-02;SOR=0.673;VQSLOD=6.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1449,0,1334
chr1	17420398	rs2235920	C	G	1095.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.770e-01;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=-3.120e-01;SOR=0.467;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:234,0,315
chr1	17422192	rs2076610	G	A	1507.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.056e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=2.49;SOR=0.671;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:296,0,180
chr1	17422226	rs2076609	C	T	2430.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=1.39;SOR=0.632;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:461,0,270
chr1	17422302	rs2076608	T	C	6471.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590e-01;DB;DP=108;ExcessHet=3.9794;FS=7.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=-9.410e-01;SOR=0.408;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,53:108:99:1360,0,1553
chr1	17422610	rs2235918	A	G	1780.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.27;ReadPosRankSum=0.380;SOR=1.926;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:311,0,393
chr1	17422660	rs2076607	C	T	897.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=0.431;SOR=2.910;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:58:146,0,58
chr1	17431119	rs2746499	A	G	306.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.61;QD=34.09;SOR=4.615;VQSLOD=3.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr1	17431277	rs6701159	G	T	1732.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.42;ReadPosRankSum=0.562;SOR=0.781;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,5:27:99:125,0,588
chr1	17431618	rs11203300	A	G	3124.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DB;DP=43;ExcessHet=3.0103;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=0.195;SOR=0.952;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:589,0,486
chr1	17431681	rs2647172	C	A	1506.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=13;ExcessHet=3.0103;FS=4.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.25;ReadPosRankSum=0.213;SOR=2.687;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:290,0,123
chr1	17550225	rs3003481	T	C	5964.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=0.703;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1655,159,0
chr1	17550303	rs2293913	T	C	835.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.230e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-2.110e-01;SOR=0.533;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,31:46:99:844,0,347
chr1	17550405	rs116218384	A	T	366.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.52;ReadPosRankSum=-9.680e-01;SOR=2.670;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,10:12:50:375,0,50
chr1	17550601	rs3003482	G	A	550.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=2.985;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	17551034	rs2293915	A	T	3145.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=31.58;SOR=5.136;VQSLOD=5.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1266,99,0
chr1	17552875	rs2977290	A	G	3993.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=1.883;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:673,63,0
chr1	17555316	rs2977233	C	G	2538.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=0.714;SOR=0.625;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:420,0,345
chr1	17555508	rs2977234	G	T	3030.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;DB;DP=67;ExcessHet=1.5490;FS=2.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=-6.750e-01;SOR=0.459;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,30:67:99:713,0,918
chr1	17557039	rs10888010	T	C	1557.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-01;DB;DP=41;ExcessHet=6.9897;FS=0.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-6.040e-01;SOR=0.846;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:655,0,529
chr1	17557133	rs3003406	A	C	3193.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.530e-01;DB;DP=110;ExcessHet=6.9897;FS=2.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=0.246;SOR=0.546;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,48:110:99:1104,0,1559
chr1	17557178	rs2977235	C	T	3278.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=115;ExcessHet=6.9897;FS=5.870;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-4.750e-01;SOR=0.851;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,43:115:99:985,0,1713
chr1	17557310	rs3003407	G	A	954.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-3.080e-01;SOR=0.712;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:331,0,597
chr1	17557426	rs2977236	C	G	282.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=-4.310e-01;SOR=0.593;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:69:154,0,69
chr1	17559069	rs4309027	A	G	536.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.816;SOR=0.760;VQSLOD=6.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:109,0,176
chr1	17559196	rs4268393	T	C	3057.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.11;DB;DP=51;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=0.538;SOR=0.691;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:689,0,771
chr1	17563967	rs2977306	T	C	5408.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=133;ExcessHet=6.9897;FS=1.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-7.860e-01;SOR=0.842;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,54:133:99:1416,0,2157
chr1	17564895	rs2977309	G	C	545.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.74;SOR=2.985;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	17564990	rs2977310	T	C	540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=6.9897;FS=1.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-7.810e-01;SOR=1.241;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:111,0,65
chr1	17566041	rs41265087	C	A	187.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614e+00;DB;DP=19;ExcessHet=3.0103;FS=8.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.410;SOR=0.056;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:196,0,324
chr1	17570286	rs2977222	T	C	2727.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=69;ExcessHet=6.9897;FS=1.914;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.483;SOR=0.888;VQSLOD=6.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,35:69:99:878,0,816
chr1	17570466	rs2293921	T	C	5760.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DB;DP=115;ExcessHet=6.9897;FS=0.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=-5.760e-01;SOR=0.740;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,58:115:99:1535,0,1398
chr1	17570767	rs41300110	C	G	2731.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364e+00;DB;DP=221;ExcessHet=3.0103;FS=0.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=1.26;SOR=0.655;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,108:221:99:2740,0,3054
chr1	17592121	rs72646775	T	C	926.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244e+00;DB;DP=74;ExcessHet=3.0103;FS=6.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.68;SOR=0.207;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:935,0,1040
chr1	17593144	rs2272628	C	G	2892.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=103;ExcessHet=3.9794;FS=0.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.914;SOR=0.618;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,52:103:99:1505,0,1329
chr1	17594133	rs77917278	G	C	206.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.980e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-1.213e+00;SOR=0.223;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:81:81,0,265
chr1	17594263	rs4262593	T	C	1130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491e+00;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.539;SOR=0.720;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,36:86:99:1139,0,1667
chr1	17594592	rs4339902	G	A	691.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116e+00;DB;DP=37;ExcessHet=3.0103;FS=8.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.418;SOR=3.230;VQSLOD=15.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:700,0,466
chr1	17594645	rs4262594	A	G	438.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.706e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-2.340e-01;SOR=1.085;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:447,0,305
chr1	17597181	rs10888013	A	G	812.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=14;ExcessHet=6.9897;FS=5.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.309;SOR=0.201;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:266,0,211
chr1	17597314	rs3215408	T	TC	1100.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.080e-01;DB;DP=64;ExcessHet=3.0103;FS=1.070;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=0.551;SOR=0.884;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,42:64:99:1109,0,493
chr1	17597721	rs4595409	A	G	1010.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.646;SOR=0.251;VQSLOD=6.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:551,0,342
chr1	17600725	rs3835470	AGAGGGC	A	78.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=2.303;VQSLOD=6.27;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	17600822	rs11203346	A	G	94.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.648;SOR=0.836;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:103,0,228
chr1	17601083	rs2293917	C	T	2775.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=0.843;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2792,252,0
chr1	17601165	rs11585357	C	T	863.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230e-01;DB;DP=74;ExcessHet=3.0103;FS=6.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-5.690e-01;SOR=1.444;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,35:74:99:872,0,1028
chr1	17601419	rs2977297	C	G	631.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.42;POSITIVE_TRAIN_SITE;QD=29.02;SOR=5.670;VQSLOD=5.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	17603472	rs72646785	G	T	328.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=1.31;SOR=1.022;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:337,0,162
chr1	17607068	rs2272630	T	C	1035.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=1.697;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1052,78,0
chr1	17635036	rs2501798	G	C	3029.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.87;SOR=2.219;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:719,57,0
chr1	17635072	rs2501799	A	G	2010.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=2.226;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:566,48,0
chr1	17635141	rs2477132	C	A	1205.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=2.012;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:387,36,0
chr1	17635237	rs2501800	A	G	269.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=1.863;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr1	17660468	rs34309058	C	A	678.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779e+00;DB;DP=52;ExcessHet=3.0103;FS=10.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.194;SOR=0.528;VQSLOD=19.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,29:52:99:687,0,588
chr1	17660601	rs57744451	T	C	2060.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=0.758;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2077,186,0
chr1	17666547	rs1635575	G	A	479.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=21.82;SOR=3.442;VQSLOD=17.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:14:129,14,0
chr1	17699151	rs180733568	A	C	57.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:66,0,35
chr1	17707739	rs1204898	T	C	4487.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=44;ExcessHet=3.0103;FS=4.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=0.769;SOR=0.359;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1351,132,0
chr1	17707798	rs10788668	C	T	1838.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=25;ExcessHet=3.9794;FS=2.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=0.343;SOR=1.112;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:866,75,0
chr1	17708349	rs7556072	G	A	2242.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.904e+00;DB;DP=36;ExcessHet=3.9794;FS=1.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=1.60;SOR=0.338;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1339,108,0
chr1	17718418	rs72637462	C	T	675.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.19;ReadPosRankSum=1.69;SOR=3.160;VQSLOD=18.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:433,33,0
chr1	17718671	rs10709483	AG	A	8950.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=1.060;VQSLOD=5.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3340,283,0
chr1	17720088	rs6695531	T	G	76.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.50;SOR=1.179;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr1	17720161	rs6687881	C	T	782.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.75;DB;DP=8;ExcessHet=3.9794;FS=2.566;MQ=60.00;MQRankSum=0.00;QD=31.32;ReadPosRankSum=1.71;SOR=0.314;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:17720161_C_T:352,24,0:17720161
chr1	17720162	rs6695640	T	G	782.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=8;ExcessHet=3.9794;FS=2.566;MQ=60.00;MQRankSum=0.00;QD=31.32;ReadPosRankSum=1.71;SOR=0.314;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:17720161_C_T:352,24,0:17720161
chr1	17720391	rs6678552	G	A	3989.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335e+00;DB;DP=77;ExcessHet=1.5490;FS=3.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=-5.100e-02;SOR=0.477;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2462,229,0
chr1	17720439	rs6695849	T	C	6562.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.097;DB;DP=119;ExcessHet=3.9794;FS=0.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-7.900e-02;SOR=0.653;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3719,357,0
chr1	17720615	rs10458537	A	C	6585.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=85;ExcessHet=3.9794;FS=1.884;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=0.157;SOR=0.583;VQSLOD=6.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3085,255,0
chr1	17720686	rs34075690	AG	A	4172.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=72;ExcessHet=3.9794;FS=9.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=1.84;SOR=0.453;VQSLOD=4.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2273,217,0
chr1	17721094	rs4920602	G	A	280.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.27;SOR=2.833;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:294,24,0
chr1	17721388	rs6691485	C	T	830.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.838e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=0.265;SOR=1.329;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:408,33,0
chr1	17721695	rs369334834	GTTT	G	2914.21	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DB;DP=41;ExcessHet=3.9794;FS=1.032;MQ=59.88;MQRankSum=0.00;QD=27.75;ReadPosRankSum=0.185;SOR=0.555;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,39:41:33:1588,33,0
chr1	17721721	rs147310450	TGA	T	1689.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.96;DB;DP=33;ExcessHet=1.5490;FS=1.826;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.80;ReadPosRankSum=0.683;SOR=1.306;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,32:33:55:1363,55,0
chr1	17721844	rs2800692	A	C	524.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=7;ExcessHet=3.9794;FS=4.008;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=0.00;SOR=1.911;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:248,21,0
chr1	17722363	rs7538876	G	A	797.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.25;ReadPosRankSum=0.243;SOR=2.925;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:506,36,0
chr1	17723476	rs61476146	C	CCA	1997.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.600e-02;DB;DP=31;ExcessHet=1.5490;FS=6.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=1.42;SOR=1.905;VQSLOD=6.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:96:1430,96,0
chr1	17723739	rs12129196	G	A	3441.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.98;ReadPosRankSum=0.892;SOR=0.859;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2257,183,0
chr1	17723870	rs12129263	G	A	410.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.284e+00;DB;DP=8;ExcessHet=1.5490;FS=10.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=0.175;SOR=4.271;VQSLOD=12.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:291,24,0
chr1	17725011	rs1555663	T	C	560.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.21;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:346,42,0
chr1	17725358	rs2244936	C	G	5249.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=109;ExcessHet=3.9794;FS=3.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=1.65;SOR=0.509;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3246,327,0
chr1	17728119	rs2526830	A	G	360.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=1.01;SOR=1.022;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr1	17735869	rs115730509	G	A	577.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.644e+00;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=-8.140e-01;SOR=0.275;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:586,0,539
chr1	17736578	rs2762890	A	G	2158.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.086e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=0.377;SOR=1.609;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1025,75,0
chr1	17739586	rs942457	G	A	933.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;DB;DP=19;ExcessHet=1.5490;FS=1.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=1.51;SOR=1.545;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:718,57,0
chr1	17739820	rs1075535	T	C	2746.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=42;ExcessHet=3.9794;FS=4.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=0.184;SOR=1.178;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1292,126,0
chr1	17748427	rs7535033	C	A	184.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=1.15;SOR=2.303;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	17749459	rs5772758	C	CCAA	974.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.69;SOR=1.931;VQSLOD=5.65;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	17752000	rs1324368	A	G	642.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.101e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=-1.583e+00;SOR=1.781;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:361,30,0
chr1	17752451	rs1324367	C	G	229.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=0.674;SOR=2.303;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr1	17764627	rs113663016	G	A	2679.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.454e+00;DB;DP=58;ExcessHet=1.5490;FS=2.337;MQ=60.00;MQRankSum=0.00;QD=23.30;ReadPosRankSum=0.566;SOR=0.462;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1996,174,0
chr1	17907505	rs11203423	A	G	1172.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=3.545;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:677,57,0
chr1	17907575	rs11203424	C	T	314.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=58.12;POSITIVE_TRAIN_SITE;QD=34.94;SOR=3.056;VQSLOD=4.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	17914057	rs34417109	G	A	1437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277e+00;DB;DP=150;ExcessHet=3.0103;FS=0.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=9.000e-03;SOR=0.759;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,67:150:99:1446,0,2014
chr1	17914846	rs1193343	C	T	3258.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=5.307;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:893,72,0
chr1	17929980	rs1193338	C	G	4895.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=92;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.356;SOR=0.716;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1070,0,1189
chr1	17960812	rs2354289	T	C	3291.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=8.764;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:907,66,0
chr1	17991052	rs6695710	T	C	12213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.86;SOR=0.698;VQSLOD=18.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4348,435,0
chr1	18017522	rs871087	T	C	4535.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=1.545;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1621,165,0
chr1	18017558	rs871088	A	G	5783.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=1.161;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2066,207,0
chr1	18017571	.	A	G	1110.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DP=75;ExcessHet=3.0103;FS=1.898;MQ=60.00;MQRankSum=0.00;QD=14.80;ReadPosRankSum=-6.110e-01;SOR=0.929;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,45:75:99:1119,0,657
chr1	18017704	rs871089	C	T	3920.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=2.045;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1215,108,0
chr1	18021406	rs905389	T	C	17846.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.12;SOR=1.103;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,172:172:99:5696,516,0
chr1	18021867	rs2279816	T	C	1232.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=4.743;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:165,15,0
chr1	18023112	rs4920619	A	G	838.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.20;SOR=4.892;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr1	18023154	rs4920620	A	G	1807.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.28;SOR=4.977;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:314,27,0
chr1	18023290	rs2270979	C	T	6361.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=1.022;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1975,183,0
chr1	18023365	rs2270978	C	T	11466.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=0.839;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3665,357,0
chr1	18023509	rs2270977	T	C	13263.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=0.812;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4470,417,0
chr1	18023690	rs2270976	A	G	17253.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=221;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=29.90;SOR=0.776;VQSLOD=4.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,221:221:99:6551,663,0
chr1	18023997	rs3835471	G	GC	2131.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.86;SOR=1.085;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,19:19:60:717,60,0
chr1	18554345	rs61762155	T	C	8176.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=119;ExcessHet=3.0103;FS=4.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=-9.030e-01;SOR=0.984;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3808,357,0
chr1	18554356	rs3738087	C	T	9202.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=136;ExcessHet=3.0103;FS=5.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=-2.102e+00;SOR=1.011;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4310,407,0
chr1	18661583	rs536540	T	C	1288.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=125;ExcessHet=3.0103;FS=0.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=1.11;SOR=0.781;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,52:125:99:1297,0,1826
chr1	18688947	rs871288	T	C	553.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=3.912;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr1	18702563	rs10157096	A	G	1061.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.21;SOR=6.804;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:304,24,0
chr1	18702988	rs10796450	T	C	2496.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.49;SOR=5.610;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:490,39,0
chr1	18703208	rs10796451	C	G	2057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=4.493;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:519,39,0
chr1	18703523	rs2271859	A	G	17630.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=382;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.772;SOR=0.722;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:225,157:382:99:3658,0,5137
chr1	18703538	rs2271860	G	C	16383.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=323;ExcessHet=3.9794;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=-3.340e-01;SOR=0.745;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:185,138:323:99:3342,0,4668
chr1	18704862	rs1043459	A	G	4752.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=82;ExcessHet=3.9794;FS=0.477;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=2.65;SOR=0.737;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,36:82:99:854,0,1106
chr1	18807339	rs2992756	T	C	1045.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=1.94;SOR=0.703;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:185,0,134
chr1	18807536	rs7512414	G	T	1206.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=73;ExcessHet=3.9794;FS=0.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=2.07;SOR=0.814;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,37:73:99:828,0,970
chr1	18807620	rs34109355	G	C	1326.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e-01;DB;DP=53;ExcessHet=3.9794;FS=2.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=0.184;SOR=1.022;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,33:53:99:873,0,540
chr1	18807755	rs34976233	G	A	2008.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DB;DP=69;ExcessHet=3.9794;FS=6.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=3.63;SOR=1.276;VQSLOD=20.67;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,38:69:99:1113,0,784
chr1	18807781	rs35013594	C	T	2469.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.000e-03;DB;DP=97;ExcessHet=3.9794;FS=8.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=2.98;SOR=1.259;VQSLOD=19.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,54:97:99:1498,0,1108
chr1	18807897	rs2992755	C	G	19350.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=1.544;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,230:230:99:7064,690,0
chr1	18807953	rs11261022	C	A	14605.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.910e-01;DB;DP=283;ExcessHet=3.9794;FS=1.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=-1.380e+00;SOR=0.772;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:159,124:283:99:2855,0,4285
chr1	18808056	rs7515150	G	C	10216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.73;DB;DP=345;ExcessHet=3.9794;FS=1.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=1.22;SOR=0.675;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:177,168:345:99:0|1:18808056_G_C:6451,0,9360:18808056
chr1	18808069	rs7528572	A	G	10394.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.81;DB;DP=354;ExcessHet=3.9794;FS=2.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=0.841;SOR=0.698;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:186,168:354:99:0|1:18808056_G_C:6506,0,9744:18808056
chr1	18808292	rs2992753	C	A	27780.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.12;SOR=0.849;VQSLOD=4.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,283:283:99:8999,849,0
chr1	18808465	rs3007718	T	A	14594.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=1.131;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:4276,354,0
chr1	18808526	rs2992752	A	C	14640.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.43;ReadPosRankSum=0.936;SOR=0.465;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,123:124:99:4037,361,0
chr1	18809896	rs2992745	A	T	9477.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=29.52;SOR=5.775;VQSLOD=5.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:3193,229,0
chr1	18809916	rs12061708	G	A	4478.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.915e+00;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=1.10;POSITIVE_TRAIN_SITE;QD=27.65;ReadPosRankSum=0.692;SOR=0.823;VQSLOD=2.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,32:57:99:1065,0,889
chr1	18810344	rs2992740	G	T	3399.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=37;ExcessHet=3.0103;FS=7.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=0.231;SOR=2.955;VQSLOD=17.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:18810344_G_T:1439,111,0:18810344
chr1	18810349	rs6667069	G	C	981.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.77;DB;DP=39;ExcessHet=3.9794;FS=6.788;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=1.51;SOR=0.183;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,21:39:99:0|1:18810344_G_T:620,0,456:18810344
chr1	18958256	.	C	A	474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205e+00;DP=40;ExcessHet=3.0103;FS=1.670;MQ=60.00;MQRankSum=0.00;QD=11.86;ReadPosRankSum=1.46;SOR=1.179;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,16:40:99:483,0,749
chr1	18960722	rs4920523	G	C	3365.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513e+00;DB;DP=94;ExcessHet=3.9794;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=0.465;SOR=0.585;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,46:94:99:1291,0,1346
chr1	19018131	rs2076021	A	C	1133.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=3.407;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:441,36,0
chr1	19071153	rs142874250	C	CGGAT	905.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.795e+00;DB;DP=12;ExcessHet=1.5490;FS=4.664;MQ=60.00;MQRankSum=0.00;QD=33.55;ReadPosRankSum=0.906;SOR=0.121;VQSLOD=4.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:42:613,42,0
chr1	19071183	rs3915505	A	AATGG	1445.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.79;MQRankSum=0.00;QD=25.80;ReadPosRankSum=1.02;SOR=0.894;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,5:19:99:157,0,533
chr1	19166294	rs12033832	G	A	7243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=181;ExcessHet=6.9897;FS=0.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-6.980e-01;SOR=0.632;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,81:181:99:2156,0,2725
chr1	19168478	rs369563018	G	GA	930.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-02;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=1.45;SOR=3.570;VQSLOD=4.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:13:99:108,0,133
chr1	19168533	rs12082240	C	T	961.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.250e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=-3.120e-01;SOR=2.049;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:182,0,106
chr1	19175846	rs28374389	T	C	719.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-9.350e-01;SOR=0.862;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:728,0,672
chr1	19176254	rs6675384	C	T	516.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.45;ReadPosRankSum=1.28;SOR=3.126;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr1	19181015	rs34447754	G	C	3720.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=97;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=1.77;SOR=0.725;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,58:97:99:1790,0,1109
chr1	19181082	rs28470550	A	C	4347.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=157;ExcessHet=3.9794;FS=2.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.507;SOR=0.846;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,91:157:99:2456,0,1580
chr1	19181393	rs35874116	T	C	6201.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290e-01;DB;DP=248;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-4.340e-01;SOR=0.688;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,115:248:99:2676,0,3279
chr1	19184077	rs68081213	A	G	5485.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=210;ExcessHet=3.9794;FS=0.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=1.01;SOR=0.777;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,103:210:99:2517,0,2488
chr1	19184156	rs201031818	G	A	1553.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.609e+00;DB;DP=119;ExcessHet=3.0103;FS=5.116;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=0.343;SOR=0.356;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,61:119:99:1562,0,1680
chr1	19184176	rs72953138	G	A	1101.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DB;DP=75;ExcessHet=3.0103;FS=9.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.388;SOR=2.034;VQSLOD=18.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,35:75:99:1110,0,1059
chr1	19186129	rs9701796	G	C	13475.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.38;DB;DP=176;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=0.679;SOR=0.737;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,176:176:99:5867,528,0
chr1	19186260	rs9700646	C	T	5657.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=99;ExcessHet=3.9794;FS=0.944;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=1.38;SOR=0.767;VQSLOD=6.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,53:99:99:1394,0,1201
chr1	19186320	rs9701803	G	C	4572.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.350;DB;DP=49;ExcessHet=3.0103;FS=0.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=-1.893e+00;SOR=0.621;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1853,147,0
chr1	19199221	rs11740	C	T	1137.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.61;ReadPosRankSum=0.862;SOR=2.712;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:58:58,0,247
chr1	19199473	rs28700162	T	A	12351.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=0.130;SOR=0.727;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,74:157:99:1687,0,1971
chr1	19199487	rs35255325	A	G	1896.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551e+00;DB;DP=143;ExcessHet=3.0103;FS=3.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.150;SOR=0.451;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,77:143:99:1905,0,1723
chr1	19199723	rs28482942	G	A	815.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.22;ReadPosRankSum=0.298;SOR=2.753;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,164
chr1	19200895	rs35657817	C	T	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=61;ExcessHet=3.0103;FS=1.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=0.595;SOR=0.965;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,23:61:99:507,0,962
chr1	19200908	rs28529092	G	C	7485.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=67;ExcessHet=3.0103;FS=2.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.36;ReadPosRankSum=-1.080e-01;SOR=1.030;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,39:67:99:1051,0,697
chr1	19201184	rs6665917	G	C	3313.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=4.781;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:771,66,0
chr1	19201211	rs35163726	T	TG	2194.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=5.926;VQSLOD=6.58;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:524,42,0
chr1	19201665	rs28481840	A	G	461.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.76;ReadPosRankSum=-5.240e-01;SOR=3.126;VQSLOD=19.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:93,0,64
chr1	19201956	rs2230708	A	G	15459.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=0.798;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,158:158:99:4634,474,0
chr1	19202507	rs6426802	T	C	507.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.15;SOR=3.912;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr1	19202770	rs7550822	T	C	8671.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=1.129;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3279,311,0
chr1	19202896	rs2230707	G	A	3846.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=85;ExcessHet=3.9794;FS=6.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.065;SOR=1.101;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,49:85:99:1233,0,854
chr1	19202917	rs7550938	T	C	8220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.92;SOR=1.661;VQSLOD=19.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,74:74:99:1|1:19202917_T_C:3238,223,0:19202917
chr1	19202926	rs2230706	T	C	8017.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.56;SOR=1.704;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,72:72:99:1|1:19202917_T_C:3206,220,0:19202917
chr1	19203997	rs2230705	C	G	5688.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DB;DP=155;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.258;SOR=0.681;VQSLOD=6.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,80:155:99:1943,0,1726
chr1	19204154	rs6426813	G	A	802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=59.11;MQRankSum=0.875;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=0.344;SOR=0.627;VQSLOD=1.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:139,0,225
chr1	19204173	rs6426814	A	G	1195.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=12;ExcessHet=3.9794;FS=2.534;MQ=59.09;MQRankSum=-9.980e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=-7.050e-01;SOR=0.210;VQSLOD=0.601;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:227,0,132
chr1	19205672	rs28497538	T	G	1972.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=37;ExcessHet=1.5490;FS=3.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-1.505e+00;SOR=0.352;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:495,0,492
chr1	19206027	rs72651876	C	T	174.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=-5.890e-01;SOR=0.446;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:13:182,0,13
chr1	19208145	rs112548638	G	GGGTTGCCT	10914.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=2.171;VQSLOD=5.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2960,198,0
chr1	19208944	rs28566028	A	G	1907.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.89;SOR=2.644;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:685,60,0
chr1	19209543	rs6426611	A	G	11693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=1.659;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3840,399,0
chr1	19215834	rs941495	T	C	27983.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=325;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=1.171;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,325:325:99:9685,972,0
chr1	19243589	rs3748586	A	G	3611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DB;DP=100;ExcessHet=6.9897;FS=0.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.615e+00;SOR=0.650;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,39:100:99:1039,0,1602
chr1	19244678	rs4912056	C	T	201.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=1.07;SOR=0.582;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:114,0,131
chr1	19282944	rs4912132	G	A	713.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=27;ExcessHet=3.9794;FS=4.098;MQ=60.00;MQRankSum=0.00;QD=12.97;ReadPosRankSum=0.092;SOR=1.314;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:282,0,521
chr1	19282981	rs1886768	A	C	1305.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.553e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.68;ReadPosRankSum=-1.767e+00;SOR=1.848;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:654,54,0
chr1	19403221	rs76098105	C	T	794.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=86;ExcessHet=3.0103;FS=1.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-1.530e-01;SOR=1.030;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,31:86:99:803,0,1489
chr1	19408294	rs67232976	G	GC	5258.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-02;DB;DP=156;ExcessHet=6.9897;FS=1.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-3.230e-01;SOR=0.870;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:87,69:156:99:1766,0,2370
chr1	19408380	rs12164540	T	C	2873.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=78;ExcessHet=6.9897;FS=3.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.211;SOR=1.015;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,42:78:99:1322,0,1093
chr1	19411129	rs1043905	A	G	7668.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=144;ExcessHet=3.9794;FS=3.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=-1.289e+00;SOR=0.887;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,64:144:99:1503,0,1913
chr1	19412464	rs2274009	C	T	953.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=17;ExcessHet=3.9794;FS=2.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=0.375;SOR=0.148;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:261,0,280
chr1	19413261	rs12584	T	A	6349.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.390e-01;DB;DP=111;ExcessHet=3.9794;FS=6.969;MQ=59.96;MQRankSum=1.19;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=1.12;SOR=0.414;VQSLOD=1.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,64:111:99:1603,0,1215
chr1	19413420	rs2274008	T	G	2822.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e+00;DB;DP=54;ExcessHet=3.9794;FS=3.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=1.38;SOR=0.402;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:668,0,931
chr1	19415304	rs1043899	C	T	2564.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625e+00;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.258;SOR=0.667;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,27:50:99:642,0,652
chr1	19420392	rs1106839	G	A	3620.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=56;ExcessHet=3.9794;FS=0.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=1.09;SOR=0.602;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:688,0,715
chr1	19421846	rs2274007	G	T	305.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-3.630e-01;SOR=0.743;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:19421846_G_T:153,0,396:19421846
chr1	19421856	rs2274006	A	G	1035.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=3.9794;FS=3.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=-3.280e-01;SOR=0.330;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:19421846_G_T:153,0,396:19421846
chr1	19426199	rs2236377	G	A	1155.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=0.101;SOR=0.576;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:179,0,248
chr1	19433449	rs6426677	A	G	1757.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=24;ExcessHet=3.9794;FS=4.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=1.17;SOR=1.371;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:387,0,364
chr1	19437185	rs10916957	G	T	887.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.533e+00;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.02;SOR=0.751;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:324,0,604
chr1	19440105	rs12139884	C	T	299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.288e+00;DB;DP=23;ExcessHet=3.0103;FS=4.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.986;SOR=0.174;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,11:23:99:0|1:19440105_C_T:308,0,505:19440105
chr1	19440107	rs9661719	A	G	2989.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=24;ExcessHet=3.9794;FS=3.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=1.27;SOR=1.262;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,13:24:99:1|0:19440105_C_T:457,0,423:19440105
chr1	19441212	rs2274003	A	G	1346.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=-1.366e+00;SOR=2.531;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:138,0,171
chr1	19441693	.	G	GCA	1233.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.626e+00;DP=14;ExcessHet=3.9794;FS=3.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=-3.260e-01;SOR=0.381;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,4:14:90:90,0,430
chr1	19441723	rs370299174	ACTCT	A	217.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=18;ExcessHet=3.0103;FS=2.527;MQ=60.00;MQRankSum=0.00;QD=12.07;ReadPosRankSum=1.96;SOR=0.197;VQSLOD=5.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:18:99:226,0,427
chr1	19446388	rs2296104	T	C	412.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=0.524;SOR=1.244;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:111,0,67
chr1	19446587	rs6693149	C	T	694.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.992;SOR=0.646;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:183,0,101
chr1	19447498	rs6426678	T	C	1441.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DB;DP=16;ExcessHet=3.9794;FS=1.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=0.486;SOR=1.376;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:79:79,0,361
chr1	19447843	rs1044010	C	G	6015.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=107;ExcessHet=3.9794;FS=2.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=0.823;SOR=0.589;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,53:107:99:1430,0,1403
chr1	19448326	rs6681662	C	T	5276.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=83;ExcessHet=3.9794;FS=3.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.51;SOR=0.908;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,36:83:99:881,0,1164
chr1	19448608	rs7535738	C	G	693.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=0.732;SOR=0.368;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:101,0,224
chr1	19464773	rs2274001	C	T	1001.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=1.11;SOR=0.732;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:243,0,186
chr1	19470662	rs4912050	T	C	845.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115e+00;DB;DP=40;ExcessHet=3.9794;FS=1.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-5.030e-01;SOR=0.483;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:454,0,517
chr1	19470749	rs2296109	G	C	1207.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=21;ExcessHet=3.9794;FS=2.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=1.14;SOR=1.130;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:257,0,312
chr1	19486839	rs946419	T	C	2361.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743e+00;DB;DP=41;ExcessHet=3.9794;FS=1.044;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=1.08;SOR=0.538;VQSLOD=5.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:706,0,463
chr1	19491857	rs3748757	T	C	4210.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269e+00;DB;DP=66;ExcessHet=3.9794;FS=2.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=2.88;SOR=0.530;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:691,0,939
chr1	19499560	rs16862578	T	C	2423.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.77;DB;DP=75;ExcessHet=3.9794;FS=0.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.948;SOR=0.619;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,31:75:99:977,0,1226
chr1	19499835	rs951908	G	C	6727.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=63;ExcessHet=3.9794;FS=2.710;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=1.77;SOR=0.950;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1048,0,904
chr1	19500729	rs6694521	G	A	3454.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=55;ExcessHet=3.9794;FS=6.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=-1.150e-01;SOR=1.432;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:813,0,713
chr1	19510394	rs3762396	A	G	4975.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.17;DB;DP=87;ExcessHet=3.9794;FS=9.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=2.46;SOR=1.249;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,32:87:99:802,0,1318
chr1	19525585	rs841374	T	C	331.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.14;ReadPosRankSum=0.00;SOR=4.407;VQSLOD=13.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:75,0,69
chr1	19554099	rs7515397	T	G	1342.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=17;ExcessHet=3.9794;FS=1.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.38;ReadPosRankSum=2.01;SOR=1.022;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,2:17:34:34,0,467
chr1	19557713	rs2275403	G	C	1091.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=12;ExcessHet=3.9794;FS=6.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.487;SOR=2.012;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:265,0,114
chr1	19563461	.	CA	C	370.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.140e-01;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.42;MQRankSum=0.00;QD=14.81;ReadPosRankSum=-3.850e-01;SOR=1.609;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:15:18:117,0,18
chr1	19565078	.	A	G	62.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.73;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:71,0,73
chr1	19566881	rs12084825	C	T	2430.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DB;DP=88;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=1.29;SOR=0.658;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,45:88:99:947,0,1136
chr1	19578192	rs2294942	G	A	4092.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.755e+00;DB;DP=55;ExcessHet=3.9794;FS=4.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=1.05;SOR=1.199;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,31:55:99:1015,0,723
chr1	19581442	.	GA	G	67.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830e-01;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.37;ReadPosRankSum=0.758;SOR=0.597;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,8:49:76:76,0,930
chr1	19581543	rs735025	G	A	923.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=1.69;SOR=2.694;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:52:254,0,52
chr1	19582563	rs1557133	G	A	3169.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=59;ExcessHet=3.9794;FS=5.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.441;SOR=1.144;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:754,0,812
chr1	19583400	rs1774075	A	G	5943.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.090e-01;DB;DP=78;ExcessHet=3.0103;FS=5.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.30;ReadPosRankSum=-3.360e-01;SOR=1.282;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2543,234,0
chr1	19583636	rs1126682	C	T	1368.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775e+00;DB;DP=95;ExcessHet=3.0103;FS=3.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-1.053e+00;SOR=0.407;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,51:95:99:1377,0,1224
chr1	19583734	rs4912057	G	A	3764.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=54;ExcessHet=3.9794;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=1.31;SOR=0.617;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,28:54:99:909,0,769
chr1	19584035	rs11811927	G	A	628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.612;SOR=0.734;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:637,0,494
chr1	19585545	rs761305	G	A	631.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=12;ExcessHet=3.9794;FS=1.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=1.09;SOR=1.396;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:136,0,259
chr1	19595137	rs2235795	C	T	8782.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DB;DP=123;ExcessHet=3.9794;FS=1.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=1.09;SOR=0.867;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,48:123:99:1101,0,1830
chr1	19595892	rs6665423	G	A	7803.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DB;DP=128;ExcessHet=3.9794;FS=4.107;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=-4.410e-01;SOR=0.945;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:79,49:128:99:1287,0,2169
chr1	19596124	rs2235794	C	T	1556.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.860e-01;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-2.060e-01;SOR=0.585;VQSLOD=6.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:358,0,355
chr1	19596156	rs6665756	G	T	2381.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337e+00;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.749;SOR=0.717;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:514,0,486
chr1	19596841	rs7536049	G	A	3216.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105e+00;DB;DP=40;ExcessHet=3.9794;FS=1.529;MQ=58.71;MQRankSum=0.209;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=2.16;SOR=1.206;VQSLOD=-1.461e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,22:40:99:728,0,622
chr1	19609254	rs1738025	T	C	15582.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.96;DB;DP=240;ExcessHet=3.9794;FS=0.000;MQ=58.91;MQRankSum=-2.747e+00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=8.000e-03;SOR=0.651;VQSLOD=0.863;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:122,118:240:99:3047,0,2871
chr1	19609522	rs140599506	G	A	2148.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=37;ExcessHet=3.9794;FS=1.748;MQ=53.81;MQRankSum=-9.770e-01;NEGATIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=2.11;SOR=0.945;VQSLOD=-2.797e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:595,0,415
chr1	19611227	rs1065658	G	A	2425.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=189;ExcessHet=3.0103;FS=1.876;MQ=59.93;MQRankSum=0.974;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=1.85;SOR=0.547;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:98,91:189:99:2434,0,2563
chr1	19611241	rs1738023	T	C	11890.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=159;ExcessHet=3.9794;FS=0.615;MQ=59.98;MQRankSum=0.982;POSITIVE_TRAIN_SITE;QD=22.39;ReadPosRankSum=1.33;SOR=0.593;VQSLOD=2.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:82,77:159:99:2032,0,2357
chr1	19611410	rs1968022	C	G	2804.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.778e+00;DB;DP=23;ExcessHet=3.0103;FS=9.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.62;ReadPosRankSum=-9.610e-01;SOR=0.057;VQSLOD=18.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:940,69,0
chr1	19611909	rs1774077	A	G	550.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=54.17;POSITIVE_TRAIN_SITE;QD=31.83;SOR=2.303;VQSLOD=3.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr1	19612249	rs9660883	G	A	2252.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.512e+00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=56.92;MQRankSum=-2.770e-01;NEGATIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=-2.530e-01;SOR=0.399;VQSLOD=-1.949e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:439,0,543
chr1	19638309	rs2227295	A	G	4992.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.038e+00;DB;DP=52;ExcessHet=3.0103;FS=0.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=-1.057e+00;SOR=0.913;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1717,156,0
chr1	19638883	rs2473808	T	C	31.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,37
chr1	19650982	rs41264065	C	T	362.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=34;ExcessHet=3.0103;FS=2.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-1.980e-01;SOR=0.242;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:371,0,742
chr1	19651102	rs41264067	A	G	1463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.950e-01;DB;DP=153;ExcessHet=3.0103;FS=2.079;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-2.178e+00;SOR=0.896;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,66:153:99:1472,0,2085
chr1	19651277	rs41264069	G	A	928.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113e+00;DB;DP=65;ExcessHet=3.0103;FS=8.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-1.264e+00;SOR=0.139;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,35:65:99:937,0,913
chr1	19651300	rs41264071	T	C	736.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=51;ExcessHet=3.0103;FS=3.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-1.075e+00;SOR=0.326;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:745,0,735
chr1	19651330	rs41264073	C	T	244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.459e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.240;SOR=0.576;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:253,0,673
chr1	19651385	rs214314	G	T	171.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=0.256;SOR=0.616;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:95:95,0,188
chr1	19652063	rs11558390	G	A	1286.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679e+00;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.359;SOR=0.729;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,55:99:99:1295,0,1102
chr1	19652132	rs214315	T	G	1648.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=43;ExcessHet=3.0103;FS=0.933;MQ=59.88;MQRankSum=0.00;QD=20.61;ReadPosRankSum=1.74;SOR=0.856;VQSLOD=4.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,18:43:99:629,0,671
chr1	19652135	.	G	GGT	646.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.81;MQRankSum=1.02;QD=12.67;ReadPosRankSum=1.47;SOR=0.629;VQSLOD=0.424;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,25:51:99:655,0,979
chr1	19652684	rs41264077	G	C	64.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=17;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.78;ReadPosRankSum=0.315;SOR=1.911;VQSLOD=21.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:73:73,0,453
chr1	19653256	rs7553611	A	G	750.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210e-01;DB;DP=42;ExcessHet=3.0103;FS=5.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=0.405;SOR=0.223;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:759,0,646
chr1	19653309	rs7540401	G	A	506.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.160e-01;DB;DP=27;ExcessHet=3.0103;FS=1.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=0.438;SOR=0.783;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,18:27:99:515,0,268
chr1	19669117	rs214326	A	G	401.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.28;ReadPosRankSum=-5.240e-01;SOR=1.179;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:299,0,169
chr1	19671494	rs114197650	G	A	132.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.91;ReadPosRankSum=-1.006e+00;SOR=0.941;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:141,0,104
chr1	19675263	rs34514368	GC	G	443.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=46;ExcessHet=3.9794;FS=15.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.41;ReadPosRankSum=0.822;SOR=1.981;VQSLOD=-4.930e-02;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,12:46:99:267,0,1182
chr1	19683301	rs169957	G	T	3275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DB;DP=76;ExcessHet=6.9897;FS=6.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-2.410e-01;SOR=1.108;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,35:76:99:962,0,1055
chr1	19711939	rs10753561	T	C	128.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-3.190e-01;SOR=1.112;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:61:61,0,184
chr1	19746332	rs41264091	A	T	820.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.11;DB;DP=29;ExcessHet=3.9794;FS=1.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.171;SOR=0.914;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,8:29:99:256,0,611
chr1	19775113	rs4912096	T	C	1391.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=54;ExcessHet=3.9794;FS=4.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-3.100e-01;SOR=1.215;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:652,0,841
chr1	19775246	rs10442634	C	T	3374.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=163;ExcessHet=3.9794;FS=3.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.342;SOR=0.891;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,70:163:99:1691,0,2325
chr1	19775492	rs10442635	A	G	1256.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019e+00;DB;DP=51;ExcessHet=3.9794;FS=4.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.64;SOR=0.301;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:637,0,785
chr1	19775566	rs1546264	G	A	634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=1.23;SOR=1.528;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:288,0,291
chr1	19934900	rs61740466	G	A	4167.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=191;ExcessHet=3.9794;FS=2.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.762;SOR=0.854;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,88:191:99:2150,0,2493
chr1	19948507	rs728611	A	G	1480.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DB;DP=69;ExcessHet=3.9794;FS=3.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=2.74;SOR=0.438;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,26:69:99:552,0,978
chr1	19950062	rs1737428	T	C	1024.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220e-01;DB;DP=41;ExcessHet=3.9794;FS=1.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-2.720e-01;SOR=0.495;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:426,0,591
chr1	19969611	rs2854102	A	G	611	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.51;POSITIVE_TRAIN_SITE;QD=25.81;SOR=2.584;VQSLOD=3.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr1	19972586	rs11810271	A	G	2055.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DB;DP=77;ExcessHet=3.9794;FS=2.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-8.700e-02;SOR=0.967;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,41:77:99:1117,0,1016
chr1	19981451	rs3828101	A	G	497.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.27;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=0.145;SOR=0.859;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:506,0,344
chr1	19981791	rs2294630	A	G	3238.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811e+00;DB;DP=206;ExcessHet=3.0103;FS=1.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-2.320e-01;SOR=0.586;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,125:206:99:3247,0,1999
chr1	19992066	rs10917509	T	C	953.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.286e+00;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=-8.820e-01;SOR=1.329;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:726,60,0
chr1	19992372	rs8192529	G	T	7251.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=547;ExcessHet=3.0103;FS=1.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.44;SOR=0.805;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:260,287:547:99:7260,0,5828
chr1	20020993	rs4370779	A	G	13065.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.101e+00;DB;DP=157;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=2.26;SOR=0.674;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,157:157:99:1|1:20020993_A_G:7142,479,0:20020993
chr1	20020994	rs4515815	C	T	10309.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;DB;DP=159;ExcessHet=1.5490;FS=4.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=2.32;SOR=0.473;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,159:159:99:1|1:20020993_A_G:7142,479,0:20020993
chr1	20027034	rs71704175	ATCT	A	773.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.540e-01;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.80;ReadPosRankSum=0.197;SOR=1.329;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,4:15:99:129,0,450
chr1	20027049	rs10917520	A	C	1712.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.59;ReadPosRankSum=0.795;SOR=1.437;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:454,0,217
chr1	20027404	rs10799834	G	A	4890.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=76;ExcessHet=1.5490;FS=2.608;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=-5.580e-01;SOR=1.039;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,41:76:99:1056,0,823
chr1	20027423	rs10737480	T	G	3977.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=56;ExcessHet=1.5490;FS=7.730;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=-3.530e-01;SOR=1.507;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,27:56:99:760,0,644
chr1	20066133	rs1266444	T	C	983.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=6.439;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
chr1	20066485	rs6426824	G	A	2851.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092e+00;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=0.472;SOR=0.638;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:75,75:150:99:0|1:20066485_G_A:2860,0,4260:20066485
chr1	20066490	rs6426825	T	C	2851.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.350e-01;DB;DP=147;ExcessHet=3.0103;FS=1.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=0.457;SOR=0.566;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,73:147:99:0|1:20066485_G_A:2860,0,4260:20066485
chr1	20067043	rs12064049	A	G	52.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:61,0,72
chr1	20067186	rs12065466	T	C	933.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DB;DP=67;ExcessHet=3.0103;FS=2.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.135e+00;SOR=0.326;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,34:67:99:942,0,918
chr1	20073146	rs36067693	G	A	1521.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=28;ExcessHet=1.5490;FS=2.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-1.150e-01;SOR=0.362;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:510,0,455
chr1	20082520	rs10917531	G	A	182.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=1.83;SOR=0.269;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:112,0,67
chr1	20097611	rs1266436	G	A	1240.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=8;ExcessHet=3.0103;FS=2.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=-8.160e-01;SOR=0.250;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,128
chr1	20141528	rs1541185	C	T	4563.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.287;DB;DP=119;ExcessHet=1.5490;FS=1.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=0.107;SOR=0.852;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3603,354,0
chr1	20250062	rs61753361	G	C	603.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770e-01;DB;DP=54;ExcessHet=3.0103;FS=3.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-1.446e+00;SOR=0.307;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:612,0,796
chr1	20305065	rs10732279	C	T	7370.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.20;SOR=0.953;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2304,209,0
chr1	20305466	.	GCA	G	626.42	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.97;SOR=5.994;VQSLOD=3.16;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr1	20395401	rs11573185	C	A	1909.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.050e+00;DB;DP=33;ExcessHet=3.9794;FS=2.147;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.218;SOR=0.444;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1069,99,0
chr1	20395868	rs528614	G	A	1737.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.78;SOR=3.865;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:337,27,0
chr1	20411300	rs2020883	GT	G	584.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=53;ExcessHet=3.0103;FS=1.209;MQ=60.00;MQRankSum=0.00;QD=11.02;ReadPosRankSum=-1.540e+00;SOR=1.038;VQSLOD=5.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,26:53:99:593,0,623
chr1	20416878	rs565503	C	G	456.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.20;SOR=4.977;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr1	20442054	rs584367	T	C	9675.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=0.932;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3332,327,0
chr1	20442587	rs679304	T	C	314.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.737;SOR=1.112;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:96:153,0,96
chr1	20443153	rs487904	G	A	384.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190e-01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=2.48;SOR=0.610;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:109,0,174
chr1	20446170	rs11298078	GT	G	2581.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.27;SOR=5.473;VQSLOD=7.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:615,57,0
chr1	20503710	rs10753483	G	A	270.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=5;ExcessHet=3.9794;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.00;SOR=0.148;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:148,0,23
chr1	20637043	rs12726937	C	T	6491.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=94;ExcessHet=3.9794;FS=9.273;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=1.46;SOR=0.339;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,56:94:99:1514,0,864
chr1	20637374	rs10916761	T	C	6502.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=1.48;SOR=0.728;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3039,243,0
chr1	20639207	rs7530055	G	T	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.127e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.435;SOR=0.551;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:363,0,489
chr1	20643944	rs4654851	G	C	2237.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.01;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=0.078;SOR=0.804;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:457,0,466
chr1	20644752	rs10916762	G	A	1621.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=18;ExcessHet=3.9794;FS=4.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=1.11;SOR=0.243;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:285,0,218
chr1	20649814	rs4655194	T	C	7548.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327e+00;DB;DP=138;ExcessHet=3.9794;FS=5.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=0.629;SOR=0.465;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,79:138:99:1945,0,1614
chr1	20656824	rs2072752	A	G	6461.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=112;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=0.080;SOR=0.677;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,47:112:99:1206,0,1727
chr1	20657352	rs2072753	T	C	4956.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=116;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-6.040e-01;SOR=0.707;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,56:116:99:1394,0,1381
chr1	20659684	rs12118463	A	G	573.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090e+00;DB;DP=7;ExcessHet=3.9794;FS=2.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=-8.200e-01;SOR=0.148;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:63:119,0,63
chr1	20662938	rs10916769	A	G	6809.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.880e-01;DB;DP=134;ExcessHet=3.9794;FS=1.239;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=-7.670e-01;SOR=0.622;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,56:134:99:1384,0,1950
chr1	20663825	rs2003651	A	T	63.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	20671807	rs61770716	T	C	545.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.242e+00;SOR=0.589;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,19:49:99:554,0,939
chr1	20671833	rs10799629	C	A	3327.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441e+00;DB;DP=65;ExcessHet=6.9897;FS=4.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.178;SOR=1.018;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1068,0,756
chr1	20671961	rs11582960	G	A	5335.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=126;ExcessHet=6.9897;FS=0.525;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.075;SOR=0.759;VQSLOD=6.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,61:126:99:1621,0,1652
chr1	20672101	rs4655200	C	T	2981.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=90;ExcessHet=6.9897;FS=4.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-4.260e-01;SOR=1.009;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,58:90:99:1408,0,660
chr1	20676932	rs179471	T	A	1120.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.565e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-6.670e-01;SOR=0.263;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:312,0,321
chr1	20680718	rs2072751	G	A	3716.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=98;ExcessHet=6.9897;FS=8.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.066;SOR=0.395;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,30:98:99:754,0,2040
chr1	20680760	rs230180	A	G	3055.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=79;ExcessHet=6.9897;FS=1.073;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.248;SOR=0.774;VQSLOD=6.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,23:79:99:639,0,1833
chr1	20681004	rs2281001	G	C	670.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=1.23;SOR=0.880;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:83:83,0,102
chr1	20827143	rs146877909	CA	C	619.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;DB;DP=48;ExcessHet=3.0103;FS=1.248;MQ=60.00;MQRankSum=0.00;QD=12.90;ReadPosRankSum=0.592;SOR=1.022;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,20:48:99:628,0,943
chr1	20829560	rs2641114	G	A	2029.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=27;ExcessHet=3.9794;FS=4.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=2.47;SOR=1.254;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,7:27:99:170,0,488
chr1	20915531	rs602950	A	G	837.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.452;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=0.367;SOR=0.693;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:701,51,0
chr1	20915589	rs3215400	TC	T	3204.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.701;DB;DP=49;ExcessHet=3.9794;FS=0.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=-3.090e-01;SOR=0.812;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1747,147,0
chr1	20915701	rs2072671	A	C	3314.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.187;DB;DP=79;ExcessHet=1.5490;FS=0.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=-2.043e+00;SOR=0.772;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2311,237,0
chr1	20940258	rs488991	T	A	9375.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=33.25;SOR=1.253;VQSLOD=4.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2701,248,0
chr1	20944889	rs77158575	G	A	4621.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.377e+00;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=-4.200e-02;SOR=0.709;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1732,174,0
chr1	20944909	rs61781969	G	A	5442.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611e+00;DB;DP=77;ExcessHet=3.0103;FS=1.278;MQ=60.00;MQRankSum=0.00;QD=22.58;ReadPosRankSum=-1.580e-01;SOR=0.574;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2103,230,0
chr1	20944922	rs61781970	C	T	5897.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.427e+00;DB;DP=81;ExcessHet=3.0103;FS=1.200;MQ=60.00;MQRankSum=0.00;QD=22.68;ReadPosRankSum=0.649;SOR=0.589;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2274,242,0
chr1	20945055	rs1048977	C	T	7675.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;DB;DP=102;ExcessHet=3.0103;FS=0.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=-7.040e-01;SOR=0.625;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3034,306,0
chr1	20945252	rs71734620	G	GC	839.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=4.332;VQSLOD=6.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:413,39,0
chr1	20960026	.	G	C	93.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.67;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:59:102,0,59
chr1	20960385	rs148871409	A	T	1207.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=49;ExcessHet=3.9794;FS=1.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-1.510e-01;SOR=0.933;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:712,0,588
chr1	20964270	rs2298297	C	G	784.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.757e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=0.317;SOR=1.981;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:294,24,0
chr1	20971980	.	CA	C	586	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.02;SOR=0.688;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:120,0,184
chr1	20980922	rs2070658	G	A	2643.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.406e+00;DB;DP=54;ExcessHet=1.5490;FS=1.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=0.094;SOR=0.859;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1708,161,0
chr1	20981806	rs592851	G	A	1940.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.65;SOR=2.753;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	20981908	rs76266717	G	A	507.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=55;ExcessHet=3.0103;FS=6.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.312;SOR=1.637;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,21:55:99:516,0,873
chr1	20987873	rs537816	G	C	15950.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=32.35;SOR=1.034;VQSLOD=4.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4781,458,0
chr1	20992933	rs573268	G	C	4432.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.15;SOR=5.323;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1388,99,0
chr1	20996757	rs1570663	T	G	659.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=3.9794;FS=3.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.50;ReadPosRankSum=0.405;SOR=2.303;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:360,30,0
chr1	20997072	rs41265075	A	G	2699.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;DB;DP=106;ExcessHet=3.9794;FS=3.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.702;SOR=0.937;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,44:106:99:1103,0,1627
chr1	20997340	rs10157351	G	T	355.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=11;ExcessHet=3.0103;FS=4.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=-3.610e-01;SOR=1.356;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:101,0,154
chr1	21009586	rs669410	C	T	1454.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=4.921;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:458,33,0
chr1	21009611	rs669380	T	A	951.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.94;SOR=4.255;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr1	21016487	rs489334	C	T	344.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=1.14;SOR=0.430;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:97:97,0,321
chr1	21016906	rs493018	G	T	1162.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=58.81;MQRankSum=-1.536e+00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.406;SOR=0.798;VQSLOD=0.656;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,27:48:99:687,0,518
chr1	21024743	rs521424	G	A	335.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=3.9794;FS=3.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.952;SOR=2.093;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:188,0,108
chr1	21024901	rs522496	C	T	6807.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=149;ExcessHet=3.9794;FS=0.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-3.550e-01;SOR=0.793;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,63:149:99:1351,0,2078
chr1	21030902	rs900039	G	T	5062.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767e+00;DB;DP=57;ExcessHet=3.9794;FS=2.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=-3.030e-01;SOR=0.495;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,35:57:99:916,0,568
chr1	21040079	rs10799661	C	A	3709.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247e+00;DB;DP=116;ExcessHet=1.5490;FS=10.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=-1.433e+00;SOR=1.153;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,51:116:99:1082,0,1519
chr1	21042300	rs554111	C	G	1771.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286e+00;DB;DP=23;ExcessHet=3.9794;FS=4.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=2.04;SOR=0.186;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,16:23:99:456,0,237
chr1	21043790	rs519209	T	C	2046.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.04;ReadPosRankSum=1.46;SOR=2.271;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:444,0,300
chr1	21043913	rs604659	T	C	9741.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.000e-03;DB;DP=181;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.081;SOR=0.708;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,88:181:99:2214,0,2359
chr1	21043926	rs604645	T	C	11096.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;DB;DP=206;ExcessHet=3.9794;FS=1.235;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=0.355;SOR=0.585;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,97:206:99:2372,0,2732
chr1	21044161	rs601329	A	G	10059.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.56;DB;DP=212;ExcessHet=3.9794;FS=0.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=0.843;SOR=0.623;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,89:212:99:1958,0,3036
chr1	21044219	rs601392	A	C	6892.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.990e-01;DB;DP=110;ExcessHet=3.0103;FS=1.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=0.208;SOR=0.574;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,48:110:99:1130,0,1699
chr1	21044362	rs371460735	CG	C	506.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.02;SOR=3.912;VQSLOD=6.26;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr1	21050958	rs592060	C	T	12363.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460e-01;DB;DP=164;ExcessHet=3.0103;FS=2.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.82;ReadPosRankSum=-1.405e+00;SOR=0.891;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,81:164:99:2085,0,2130
chr1	21054726	rs646786	A	G	431.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=0.00;SOR=1.061;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,110
chr1	21083435	rs113919494	G	A	258.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=9.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=0.431;SOR=4.174;VQSLOD=12.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,109
chr1	21091861	rs1985278	G	T	2005.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357e+00;DB;DP=88;ExcessHet=3.9794;FS=1.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=1.21;SOR=0.863;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,35:88:99:884,0,1511
chr1	21099846	rs589755	A	G	1501.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=17;ExcessHet=3.9794;FS=3.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=0.634;SOR=1.508;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:304,0,254
chr1	21102502	.	CA	C,CAA	187.16	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.690e-01;DP=5;ExcessHet=3.0103;FS=3.784;MQ=60.00;MQRankSum=0.00;QD=6.45;ReadPosRankSum=1.15;SOR=0.179;VQSLOD=5.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,2,2:5:22:50,23,67,22,0,49
chr1	21106204	rs200327876	G	GAA	759.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.618;SOR=0.495;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:20:99:273,0,207
chr1	21143774	rs12126757	A	T	249.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.98;ReadPosRankSum=-1.800e-01;SOR=1.022;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	21151905	rs11306078	AG	A	546.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.75;SOR=3.126;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr1	21167404	rs2230573	A	G	6660.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=1.218;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1871,171,0
chr1	21175855	rs7525082	C	A	2773.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=3.345;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:625,54,0
chr1	21179969	rs7542882	G	A	2662.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.14;SOR=2.073;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:591,54,0
chr1	21180181	rs2305463	C	T	1137.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=35;ExcessHet=3.9794;FS=0.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.49;SOR=0.892;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:533,0,410
chr1	21180250	rs7543140	G	A	445.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-1.289e+00;SOR=1.022;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:238,0,262
chr1	21188703	rs10916885	A	T	2008.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=75;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.39;SOR=0.643;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,35:75:99:926,0,856
chr1	21188871	rs17409373	C	A	2026.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.90;DB;DP=20;ExcessHet=3.9794;FS=3.934;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=0.018;SOR=1.270;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:322,0,275
chr1	21191416	rs3816454	T	G	552.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=18;ExcessHet=3.9794;FS=6.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-1.680e-01;SOR=1.835;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:249,0,283
chr1	21191430	rs3816455	A	G	507.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=16;ExcessHet=3.9794;FS=6.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-2.470e-01;SOR=1.720;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:180,0,293
chr1	21206143	rs7545133	T	G	183.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,70
chr1	21219050	rs6685306	C	T	2721.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343e+00;DB;DP=47;ExcessHet=3.9794;FS=4.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.516;SOR=0.318;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,31:47:99:815,0,392
chr1	21220375	rs2275468	T	G	229.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.9794;FS=4.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.967;SOR=0.078;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:57:57,0,245
chr1	21276854	rs3767248	A	G	104.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=-5.980e-01;SOR=0.132;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:91:110,0,91
chr1	21295864	rs2271115	C	T	2469.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;DB;DP=39;ExcessHet=3.9794;FS=3.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=0.310;SOR=1.149;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,20:39:99:497,0,495
chr1	21315574	.	G	GGGAGAGGAGA	473.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.76;ReadPosRankSum=-2.100e-01;SOR=3.611;VQSLOD=3.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:55:249,0,55
chr1	21325360	rs885363	C	A	3540.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=0.941;SOR=0.649;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,30:65:99:754,0,850
chr1	21327637	rs1395508	C	T	7763.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.43;ReadPosRankSum=-3.650e-01;SOR=0.859;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2645,266,0
chr1	21377314	rs6426663	C	T	3367.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=2.486;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:732,60,0
chr1	21494634	rs61779121	C	T	812.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=1.34;SOR=1.209;VQSLOD=5.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:248,0,133
chr1	21502724	.	TGCC	T	10028.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-02;DP=108;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.17;ReadPosRankSum=0.702;SOR=0.681;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,61:108:99:2311,0,1696
chr1	21553933	rs6665399	T	C	619.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=-8.700e-02;SOR=0.278;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:154,0,102
chr1	21554319	rs6426676	A	G	3054.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=3.014;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:858,75,0
chr1	21560253	rs28368029	G	C	1265.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=1.29;SOR=0.726;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,22:44:99:607,0,594
chr1	21584278	rs28367983	GC	G	33.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.54;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:42:42,0,98
chr1	21584941	rs212526	T	C	801.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.160e-01;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=-5.640e-01;SOR=0.473;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:197,0,250
chr1	21625145	rs10916958	T	C	1123.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.860e-01;DB;DP=51;ExcessHet=3.9794;FS=1.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=2.07;SOR=0.883;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,16:51:99:353,0,983
chr1	21671943	rs2072654	T	G	3377.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;DB;DP=74;ExcessHet=3.9794;FS=1.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=0.175;SOR=0.783;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,38:74:99:877,0,769
chr1	21752681	rs143885490	C	T	759.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.17;DB;DP=124;ExcessHet=3.0103;FS=2.830;MQ=43.90;MQRankSum=0.063;QD=6.12;ReadPosRankSum=-3.690e-01;SOR=1.016;VQSLOD=-4.344e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,35:124:99:768,0,2714
chr1	21752682	rs71512992	G	A	2002.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257e+00;DB;DP=125;ExcessHet=6.9897;FS=7.941;MQ=42.85;MQRankSum=-1.483e+00;QD=6.70;ReadPosRankSum=0.958;SOR=0.396;VQSLOD=-3.521e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,29:125:99:427,0,2944
chr1	21752762	rs144559882	T	A	2463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240e-01;DB;DP=200;ExcessHet=3.0103;FS=5.205;MQ=42.06;MQRankSum=-1.424e+00;QD=12.32;ReadPosRankSum=-1.262e+00;SOR=1.050;VQSLOD=-3.868e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:129,71:200:99:0|1:21752752_G_A:2472,0,5158:21752752
chr1	21753715	rs7364712	T	C	1839.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561e+00;DB;DP=26;ExcessHet=3.0103;FS=1.673;MQ=44.59;MQRankSum=-4.260e-01;QD=25.91;ReadPosRankSum=-1.975e+00;SOR=0.328;VQSLOD=-4.251e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:404,0,329
chr1	21754920	rs183181907	G	T	1608.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230e-01;DB;DP=167;ExcessHet=3.0103;FS=7.124;MQ=52.19;MQRankSum=-1.111e+00;NEGATIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=2.28;SOR=1.216;VQSLOD=-2.199e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,70:167:99:1617,0,2338
chr1	21754996	rs12024079	C	T	14576.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MQ=43.65;QD=29.04;SOR=1.011;VQSLOD=-4.211e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4362,458,0
chr1	21755055	rs12024104	C	A	8984.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.82;DB;DP=106;ExcessHet=3.0103;FS=3.917;MQ=38.26;MQRankSum=-1.486e+00;QD=27.73;ReadPosRankSum=0.298;SOR=1.025;VQSLOD=-5.166e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1371,0,1390
chr1	21755345	rs41302023	T	C	1290.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=56;ExcessHet=3.9794;FS=1.604;MQ=58.14;MQRankSum=0.297;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=1.15;SOR=0.506;VQSLOD=0.304;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,19:56:99:527,0,974
chr1	21755408	rs41312003	A	G	430.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=43;ExcessHet=3.0103;FS=2.772;MQ=56.41;MQRankSum=-2.915e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=1.14;SOR=1.206;VQSLOD=-1.754e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,16:43:99:439,0,646
chr1	21755453	rs3856177	G	A	1378.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=39;ExcessHet=3.0103;FS=12.566;MQ=46.46;MQRankSum=-2.917e+00;QD=19.98;ReadPosRankSum=0.067;SOR=1.245;VQSLOD=-4.049e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,9:39:99:244,0,868
chr1	21755517	rs41300136	C	T	289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536e+00;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=43.00;MQRankSum=-1.673e+00;QD=8.77;ReadPosRankSum=-5.680e-01;SOR=0.446;VQSLOD=-4.357e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,8:33:99:0|1:21755517_C_T:298,0,1020:21755517
chr1	21755756	rs56343055	G	C	17511.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941e+00;DB;DP=243;ExcessHet=3.0103;FS=0.000;MQ=55.87;MQRankSum=-6.150e-01;NEGATIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=0.996;SOR=0.746;VQSLOD=-2.496e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,99:243:99:2224,0,3803
chr1	21756008	rs3894725	G	T	6496.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009e+00;DB;DP=62;ExcessHet=3.0103;FS=1.009;MQ=57.27;MQRankSum=-2.050e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.65;ReadPosRankSum=-3.200e-01;SOR=0.538;VQSLOD=-1.535e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:1039,0,815
chr1	21756069	rs7532750	G	A	2375.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=30;ExcessHet=3.0103;FS=1.446;MQ=55.86;MQRankSum=-1.372e+00;NEGATIVE_TRAIN_SITE;QD=29.70;ReadPosRankSum=-4.200e-02;SOR=1.112;VQSLOD=-2.251e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:515,0,323
chr1	21795388	rs1827293	A	G	8739.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-02;DB;DP=108;ExcessHet=3.0103;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.57;ReadPosRankSum=-7.980e-01;SOR=0.509;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,50:108:99:1192,0,1516
chr1	21795432	rs35175190	G	GA	1285.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770e-01;DB;DP=74;ExcessHet=3.0103;FS=0.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=-9.570e-01;SOR=0.551;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1294,0,1233
chr1	21797419	rs4654944	T	C	1430.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=4.174;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:483,36,0
chr1	21797996	rs2004380	G	A	2904.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.48;ReadPosRankSum=-8.850e-01;SOR=0.826;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:486,0,469
chr1	21799489	rs1971327	T	C	9777.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=2.147;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2890,273,0
chr1	21799823	rs1971328	A	G	3184.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.01;SOR=4.977;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:649,48,0
chr1	21800185	rs7520015	T	G	3509.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=4.431;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:867,78,0
chr1	21800219	rs10916996	C	T	1862.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=6.273;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:458,36,0
chr1	21801346	rs7531217	G	A	5389.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=59.84;POSITIVE_TRAIN_SITE;QD=33.69;SOR=1.319;VQSLOD=4.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1819,173,0
chr1	21804815	rs7535654	T	G	12490.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=59.96;QD=32.36;SOR=1.370;VQSLOD=3.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4238,392,0
chr1	21805730	rs2316504	A	G	6630.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.69;SOR=2.154;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2098,183,0
chr1	21805978	rs4654948	G	A	5310.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.31;SOR=2.568;VQSLOD=19.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1397,120,0
chr1	21806447	rs3820296	T	C	2080.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.919e+00;DB;DP=21;ExcessHet=3.0103;FS=4.782;MQ=56.93;MQRankSum=-6.870e-01;NEGATIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=1.17;SOR=0.195;VQSLOD=-1.614e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:147,0,576
chr1	21806525	rs41290414	A	T	1425.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.830e-01;DB;DP=58;ExcessHet=3.0103;FS=3.818;MQ=59.50;MQRankSum=3.60;NEGATIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=-1.173e+00;SOR=0.235;VQSLOD=-2.319e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,50:58:99:1434,0,118
chr1	21806751	rs12083322	C	T	1254.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.740e+00;DB;DP=43;ExcessHet=0.4576;FS=2.534;MQ=49.50;MQRankSum=2.33;NEGATIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-1.336e+00;SOR=0.330;VQSLOD=-3.724e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,40:43:25:1271,25,0
chr1	21806792	rs56286426	C	T	180.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.080e-01;DB;DP=23;ExcessHet=3.0103;FS=2.635;MQ=43.46;MQRankSum=-8.420e-01;QD=6.46;ReadPosRankSum=-3.280e-01;SOR=2.194;VQSLOD=-4.019e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,2:23:7:7,0,687
chr1	21806821	rs2800935	A	G	650.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=42.32;QD=34.23;SOR=1.981;VQSLOD=-3.659e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:661,57,0
chr1	21807367	rs201117263	TA	T	594.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=37.58;POSITIVE_TRAIN_SITE;QD=35.00;SOR=2.712;VQSLOD=6.26;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0
chr1	21807880	rs200166141	CCTCTGTCT	C	686.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=45.55;POSITIVE_TRAIN_SITE;QD=33.21;SOR=1.244;VQSLOD=5.67;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,8:8:24:340,24,0
chr1	21808159	rs71512991	G	A	4036.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=60;ExcessHet=3.9794;FS=5.266;MQ=41.75;MQRankSum=-1.239e+00;QD=13.11;ReadPosRankSum=0.437;SOR=0.970;VQSLOD=-3.695e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1548,130,0
chr1	21808207	rs146564096	A	C	3267.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.30;DB;DP=39;ExcessHet=3.9794;FS=0.541;MQ=40.57;MQRankSum=-5.540e-01;QD=15.06;ReadPosRankSum=-5.410e-01;SOR=0.778;VQSLOD=-5.245e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,38:39:84:1184,84,0
chr1	21809524	rs71512993	A	C	1172.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=47.94;QD=31.33;SOR=4.615;VQSLOD=-8.357e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:282,21,0
chr1	21809590	rs150647738	G	A	409.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DB;DP=33;ExcessHet=3.0103;FS=5.501;MQ=50.31;MQRankSum=0.674;NEGATIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.758;SOR=1.868;VQSLOD=-2.207e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:418,0,448
chr1	21880818	rs142935969	C	CATAT	1357.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=13;ExcessHet=3.9794;FS=6.101;MQ=59.73;MQRankSum=0.00;QD=33.88;ReadPosRankSum=-1.064e+00;SOR=2.494;VQSLOD=4.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,8:13:85:330,0,85
chr1	21887290	rs1767430	C	A	1089.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.888e+00;DB;DP=39;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.317;SOR=0.703;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,15:39:99:417,0,795
chr1	21889635	rs1780316	T	C	15692.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=184;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=0.708;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,184:184:99:5406,552,0
chr1	21890386	rs1256335	G	A	2024.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=-4.150e-01;SOR=2.537;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:417,0,581
chr1	21890464	rs1767428	A	G	7473.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.38;SOR=6.027;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2565,204,0
chr1	21900420	rs2275370	A	G	8044.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=1.901;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2815,257,0
chr1	21900459	rs35488260	A	C	2428.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409e+00;DB;DP=57;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=1.05;SOR=0.704;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:664,0,912
chr1	21904206	rs1697405	C	T	10587.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.927e+00;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.04;ReadPosRankSum=0.971;SOR=2.428;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,55:96:99:1922,0,1443
chr1	21904267	rs1697406	A	G	3925.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.05;SOR=9.150;VQSLOD=25.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1357,99,0
chr1	21925108	rs2794278	T	C	1345.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.31;SOR=4.743;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:645,45,0
chr1	21925657	rs1681257	C	T	203.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=1.609;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
chr1	21926187	rs1767445	C	T	1322.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.109e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=-4.220e-01;SOR=0.726;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:800,60,0
chr1	21929260	rs829368	A	G	14606.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=0.797;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,172:172:99:5323,516,0
chr1	21929456	rs3215988	GC	G	4119.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=3.928;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1380,135,0
chr1	21929897	rs182324836	C	T	635.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.88;ReadPosRankSum=1.52;SOR=0.931;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:644,0,383
chr1	21932530	rs1767443	C	A	3300.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.700e-02;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=-6.910e-01;SOR=0.648;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1624,156,0
chr1	21934667	rs829371	G	A	7768.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.64;DB;DP=124;ExcessHet=3.0103;FS=1.609;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=0.065;SOR=0.581;VQSLOD=6.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3584,368,0
chr1	21935433	rs861212	G	T	2696.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.833;DB;DP=39;ExcessHet=3.9794;FS=1.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.509;SOR=0.887;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1187,116,0
chr1	21936835	rs116251894	C	A	1556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.40;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-1.180e-01;SOR=0.812;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,52:113:99:1565,0,1659
chr1	21937807	rs1256281	C	G	2174.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.41;SOR=7.903;VQSLOD=24.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:499,36,0
chr1	21938375	rs2275364	T	G	3425.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458e+00;DB;DP=58;ExcessHet=3.9794;FS=0.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=2.43;SOR=0.684;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,25:58:99:627,0,1118
chr1	21938897	rs947334	A	G	362.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=3.258;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	21939493	rs3767113	G	C	2873.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.999e+00;DB;DP=63;ExcessHet=6.9897;FS=1.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-8.160e-01;SOR=0.578;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,35:63:99:955,0,837
chr1	21939741	rs1256282	G	C	2635.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.76;DB;DP=74;ExcessHet=3.9794;FS=2.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-1.099e+00;SOR=0.541;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1156,0,1022
chr1	21940555	rs2275363	C	T	3893.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=66;ExcessHet=3.9794;FS=0.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.94;ReadPosRankSum=0.024;SOR=0.774;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:709,0,739
chr1	21944296	rs115641764	C	T	480.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=0.570;SOR=0.997;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:489,0,454
chr1	21944352	rs748488	A	G	3451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=80;ExcessHet=6.9897;FS=2.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.097;SOR=0.528;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,37:80:99:1075,0,1164
chr1	21944397	rs1318235	A	G	1568.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=118;ExcessHet=3.0103;FS=2.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.388;SOR=0.462;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,58:118:99:1577,0,1517
chr1	21946396	rs12134357	T	C	480.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DB;DP=47;ExcessHet=3.0103;FS=4.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-1.472e+00;SOR=1.730;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,16:47:99:489,0,949
chr1	21946415	rs1681255	G	A	3405.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.182e+00;DB;DP=60;ExcessHet=3.9794;FS=8.705;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=0.148;SOR=0.260;VQSLOD=5.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1993,180,0
chr1	21948936	rs829415	G	C	266.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=2.093;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:234,21,0
chr1	21953138	rs829411	A	G	1923.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.856e+00;DB;DP=30;ExcessHet=3.9794;FS=7.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.18;ReadPosRankSum=-1.750e-01;SOR=0.066;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1133,90,0
chr1	21953287	rs7354914	G	A	2638.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=212;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-1.410e-01;SOR=0.723;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,100:212:99:2647,0,2867
chr1	21953304	rs1531829	G	A	6419.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=252;ExcessHet=3.9794;FS=0.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=1.66;SOR=0.612;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,124:252:99:3222,0,3102
chr1	21953436	rs829412	A	G	23486.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.134e+00;DB;DP=315;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=-9.110e-01;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=0.259;SOR=0.690;VQSLOD=2.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,315:315:99:9386,943,0
chr1	21953567	rs75216224	G	C	1290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.33;DB;DP=66;ExcessHet=3.0103;FS=1.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=-1.590e+00;SOR=0.423;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,38:66:99:1299,0,819
chr1	21961138	rs116680485	G	A	478.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-6.240e-01;SOR=0.752;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:487,0,547
chr1	21961337	rs78513539	C	T	1595.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.000e-03;DB;DP=120;ExcessHet=3.0103;FS=0.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.407;SOR=0.602;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,67:120:99:1604,0,1201
chr1	21961339	rs10799706	A	T	12436.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.08;SOR=1.136;VQSLOD=18.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:4472,359,0
chr1	21975923	rs2035449	G	T	637.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.540e-01;DB;DP=7;ExcessHet=3.0103;FS=3.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:244,21,0
chr1	22005665	rs1059218	C	T	1065.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=17;ExcessHet=3.9794;FS=5.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.17;ReadPosRankSum=1.44;SOR=0.199;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:579,51,0
chr1	22007443	rs72660363	C	T	1559.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=25;ExcessHet=3.9794;FS=1.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=1.85;SOR=1.063;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:402,0,251
chr1	22013561	rs829420	C	A	1115.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=15;ExcessHet=3.9794;FS=15.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=1.72;SOR=3.545;VQSLOD=11.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:171,0,295
chr1	22013771	rs10493008	G	A	2573.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=52;ExcessHet=3.9794;FS=6.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.00;ReadPosRankSum=0.687;SOR=1.199;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:521,0,630
chr1	22016678	rs11422483	T	TA	274.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=0.00;SOR=0.760;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:113,0,119
chr1	22016719	rs1618590	T	C	775.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=5.892;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr1	22030121	rs55633304	A	G	530.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.984;DB;DP=50;ExcessHet=3.0103;FS=0.847;MQ=60.00;MQRankSum=0.00;QD=10.61;ReadPosRankSum=0.593;SOR=0.580;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:539,0,606
chr1	22032472	rs11426922	A	AT	2255.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.08;SOR=1.839;VQSLOD=5.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:639,54,0
chr1	22033152	rs41265993	G	A	1013.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=63;ExcessHet=3.0103;FS=3.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-7.800e-01;SOR=1.312;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,34:63:99:1022,0,731
chr1	22033385	.	GA	G	199.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.38;ReadPosRankSum=-1.580e+00;SOR=0.559;VQSLOD=5.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,11:27:99:208,0,348
chr1	22050649	rs2275668	C	A	6972.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.390e+00;DB;DP=84;ExcessHet=3.0103;FS=3.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=-7.780e-01;SOR=0.425;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2764,252,0
chr1	22063149	rs10753517	G	A	2455.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=24;ExcessHet=3.9794;FS=3.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=0.203;SOR=0.396;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:311,0,354
chr1	22082794	rs10458383	T	C	289.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=2.833;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr1	22082923	rs10458384	G	A	1530.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=19;ExcessHet=3.0103;FS=2.989;MQ=59.78;MQRankSum=-1.005e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=-4.940e-01;SOR=2.012;VQSLOD=0.030;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:708,57,0
chr1	22082967	.	CAA	C	959.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DP=34;ExcessHet=3.9794;FS=3.933;MQ=59.71;MQRankSum=-2.310e-01;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-1.320e-01;SOR=1.312;VQSLOD=0.459;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,12:34:99:365,0,220
chr1	22147561	.	G	A	70.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.67;ReadPosRankSum=-6.740e-01;SOR=0.105;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:22147561_G_A:78,0,238:22147561
chr1	22147565	.	T	C	70.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.67;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:22147561_G_A:78,0,238:22147561
chr1	22147566	.	G	T	70.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.67;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:22147561_G_A:78,0,238:22147561
chr1	22149935	rs897467	T	C	13063.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.135e+00;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=-6.840e-01;SOR=0.723;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:4800,483,0
chr1	22150257	rs3736357	C	T	4101.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.380e+00;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=1.05;SOR=0.756;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1897,171,0
chr1	22155723	rs7518070	T	C	2472.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.054e+00;DB;DP=25;ExcessHet=3.0103;FS=10.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=0.296;SOR=2.156;VQSLOD=18.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:994,75,0
chr1	22157689	rs3736355	G	A	12798.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.260e-01;DB;DP=186;ExcessHet=3.0103;FS=1.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=0.133;SOR=0.807;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5318,549,0
chr1	22158363	rs4654771	G	A	1421.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.304;DB;DP=18;ExcessHet=3.9794;FS=2.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=0.565;SOR=0.407;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:642,54,0
chr1	22160148	rs7547731	C	T	2576.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.81;DB;DP=34;ExcessHet=3.9794;FS=3.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=3.41;SOR=0.421;VQSLOD=22.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1255,102,0
chr1	22163153	rs12567651	A	C	311.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.210e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=-9.210e-01;SOR=1.329;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:146,12,0
chr1	22168216	rs7556412	C	T	2970.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=46;ExcessHet=3.0103;FS=1.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.84;ReadPosRankSum=0.854;SOR=0.458;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1409,138,0
chr1	22172458	rs7355045	T	C	1276.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.03;SOR=3.675;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:261,24,0
chr1	22174600	rs3767138	A	G	10916.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.11;SOR=2.116;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2645,255,0
chr1	22177119	rs61777200	A	G	1728.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.270e-01;DB;DP=19;ExcessHet=3.0103;FS=3.874;MQ=59.41;MQRankSum=-5.160e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.25;ReadPosRankSum=-5.810e-01;SOR=2.595;VQSLOD=0.025;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:707,57,0
chr1	22179673	rs12049614	T	C	2599.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.985e+00;DB;DP=28;ExcessHet=3.0103;FS=2.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=0.270;SOR=0.324;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:854,84,0
chr1	22180244	.	AAAAATAAAAT	A	103.82	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.61;SOR=1.179;VQSLOD=6.06;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	22180548	rs12117402	T	C	7966.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=0.859;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2344,201,0
chr1	22183471	rs12024579	A	C	10681.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.46;ReadPosRankSum=0.473;SOR=0.796;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3470,311,0
chr1	22183739	rs2305562	A	G	23522.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.780e-01;DB;DP=286;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=-1.680e-01;SOR=0.797;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,286:286:99:9059,858,0
chr1	22186234	rs10917056	A	G	6235.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=1.172;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2199,180,0
chr1	22187991	rs66469250	AAG	A	555.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=2.419;VQSLOD=6.21;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr1	22191454	rs897471	G	A	10971.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.100e+00;DB;DP=139;ExcessHet=3.0103;FS=1.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=0.817;SOR=0.543;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4375,417,0
chr1	22192524	rs4654993	A	G	1190.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.38;SOR=6.932;VQSLOD=23.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:386,30,0
chr1	22199081	rs2501266	A	T	8835.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=1.224;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2931,258,0
chr1	22199245	rs2229482	C	T	6247.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;DB;DP=78;ExcessHet=3.0103;FS=1.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=0.149;SOR=0.515;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,76:78:99:2327,182,0
chr1	22199821	rs2454290	G	A	7318.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.093e+00;DB;DP=88;ExcessHet=3.0103;FS=1.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.21;ReadPosRankSum=1.77;SOR=0.864;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2965,264,0
chr1	22200067	rs2247741	A	G	5044.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.374e+00;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.66;ReadPosRankSum=0.049;SOR=0.741;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1760,165,0
chr1	22200082	rs2445136	T	C	4672.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.68;SOR=2.527;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1365,135,0
chr1	22200835	rs2445135	C	G	1500.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.11;SOR=0.693;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:540,54,0
chr1	22201438	rs41307806	C	T	4076.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492e+00;DB;DP=177;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.185;SOR=0.695;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,84:177:99:2014,0,2476
chr1	22201903	rs2445134	A	G	712.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=1.863;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:295,24,0
chr1	22202109	rs2501265	C	T	5209.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.26;SOR=2.786;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1465,117,0
chr1	22203259	rs2454295	A	G	5453.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.37;SOR=4.916;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1682,135,0
chr1	22205408	rs2454294	T	C	1993.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.32;SOR=0.841;VQSLOD=17.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:695,60,0
chr1	22205466	rs2454293	T	C	2845.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=2.362;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:992,84,0
chr1	22206249	rs2244426	G	A	395.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=3.258;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	22206649	rs989994	T	C	15646.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=0.984;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5324,486,0
chr1	22206942	rs1874793	G	A	16355.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.31;SOR=0.942;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5285,476,0
chr1	22207235	rs1874792	T	C	6545.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=1.644;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2532,240,0
chr1	22207804	rs139046040	ACCCAGGGTGGCAG	A	10937.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.09;SOR=0.850;VQSLOD=5.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3692,248,0
chr1	22208030	rs921847	C	T	3447.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=1.502;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:865,75,0
chr1	22211222	rs4654994	T	C	25359.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=290;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=1.244;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,290:290:99:8928,869,0
chr1	22213628	rs115839045	G	A	469.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.75;ReadPosRankSum=-1.400e-01;SOR=0.407;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:277,0,262
chr1	22214046	rs41307868	C	T	4138.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.238e+00;DB;DP=139;ExcessHet=3.9794;FS=0.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.549;SOR=0.638;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,84:139:99:2299,0,1569
chr1	22215088	rs2445140	T	C	3220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.90;SOR=1.711;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1313,117,0
chr1	22216574	rs2254358	C	A	12894.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=0.905;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4083,402,0
chr1	22216604	rs2254357	C	G	11201.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=1.068;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2991,287,0
chr1	22217108	rs2501260	G	A	18384.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=0.749;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,207:207:99:6570,620,0
chr1	22299523	rs4466619	T	G	543.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=47.12;POSITIVE_TRAIN_SITE;QD=33.23;SOR=5.421;VQSLOD=-7.140e-02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr1	22299656	rs4233282	T	G	2793.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=24;ExcessHet=3.0103;FS=1.550;MQ=56.45;MQRankSum=0.881;NEGATIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=1.16;SOR=1.284;VQSLOD=-2.112e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:365,0,429
chr1	22299854	rs67058297	C	T	515.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=56.88;MQRankSum=-2.775e+00;NEGATIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-1.058e+00;SOR=0.527;VQSLOD=-2.267e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:524,0,402
chr1	22299966	rs4233283	C	A	573.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=0.414;SOR=2.093;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:98:98,0,191
chr1	22303702	rs4415533	C	A	776.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872e+00;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.234;SOR=0.689;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,29:67:99:785,0,1146
chr1	22304272	rs57648880	G	T	833.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=50.18;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.27;SOR=6.273;VQSLOD=2.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
chr1	22304712	rs10917088	A	G	8340.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.87;DB;DP=64;ExcessHet=3.0103;FS=20.928;MQ=54.05;MQRankSum=-1.066e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.13;ReadPosRankSum=-3.770e-01;SOR=0.059;VQSLOD=-2.552e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,44:64:99:1616,0,535
chr1	22305053	rs111318486	C	T	628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.547e+00;DB;DP=109;ExcessHet=3.0103;FS=2.691;MQ=51.93;MQRankSum=-4.401e+00;NEGATIVE_TRAIN_SITE;QD=5.76;ReadPosRankSum=-5.490e-01;SOR=0.348;VQSLOD=-3.640e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,29:109:99:637,0,2768
chr1	22305113	.	A	G	185.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.154e+00;DP=38;ExcessHet=3.0103;FS=0.000;MQ=55.54;MQRankSum=-5.255e+00;QD=4.88;ReadPosRankSum=-2.016e+00;SOR=0.061;VQSLOD=-4.448e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,7:38:99:0|1:22305113_A_G:194,0,1588:22305113
chr1	22305116	.	C	T	153.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.517e+00;DP=34;ExcessHet=3.0103;FS=0.000;MQ=56.04;MQRankSum=-5.687e+00;QD=4.51;ReadPosRankSum=-2.351e+00;SOR=0.057;VQSLOD=-4.759e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,6:34:99:0|1:22305113_A_G:162,0,1556:22305113
chr1	22305118	.	G	A	159.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.330e-01;DP=34;ExcessHet=3.0103;FS=0.000;MQ=56.04;MQRankSum=-5.687e+00;QD=4.68;ReadPosRankSum=-2.397e+00;SOR=0.057;VQSLOD=-4.752e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,6:34:99:0|1:22305113_A_G:168,0,1484:22305113
chr1	22305143	rs146290868	G	A	318.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.939e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=57.65;MQRankSum=1.14;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=0.00;SOR=0.784;VQSLOD=-3.640e-02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:327,0,357
chr1	22307340	rs7528228	C	T	1879.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=49.15;QD=23.83;SOR=5.630;VQSLOD=1.000e-03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:822,63,0
chr1	22307358	rs7528300	C	G	2263.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=52.25;QD=34.30;SOR=4.680;VQSLOD=1.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:89:977,89,0
chr1	22307538	rs7528405	C	T	5427.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.19;SOR=1.556;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2038,200,0
chr1	22307743	rs6689384	T	C	75.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.76;SOR=2.303;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr1	22310080	rs10799723	G	A	9141.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=59.99;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.34;SOR=8.756;VQSLOD=7.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2840,224,0
chr1	22310139	rs10733031	T	G	30110.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MQ=54.74;POSITIVE_TRAIN_SITE;QD=27.09;SOR=4.075;VQSLOD=3.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,199:199:99:1|1:22310139_T_G:9191,620,0:22310139
chr1	22310145	rs10733032	C	T	31879.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MQ=53.87;POSITIVE_TRAIN_SITE;QD=30.94;SOR=3.661;VQSLOD=4.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,220:220:99:1|1:22310139_T_G:9630,662,0:22310139
chr1	22310262	rs10733033	G	C	55586.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=628;ExcessHet=3.0103;FS=0.000;MQ=48.88;POSITIVE_TRAIN_SITE;QD=30.06;SOR=0.696;VQSLOD=-9.264e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,628:628:99:18428,1882,0
chr1	22310411	rs28468423	A	G	25690.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.743e+00;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=52.37;MQRankSum=1.26;NEGATIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=-2.750e-01;SOR=1.254;VQSLOD=-2.534e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,159:159:99:1|1:22310411_A_G:7153,485,0:22310411
chr1	22310413	rs7549398	A	G	25690.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.410;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=52.46;MQRankSum=1.26;NEGATIVE_TRAIN_SITE;QD=31.80;ReadPosRankSum=-7.800e-02;SOR=1.246;VQSLOD=-2.579e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,155:155:99:1|1:22310411_A_G:7153,485,0:22310411
chr1	22310662	rs6426735	G	T	36991.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.11;DB;DP=424;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=-3.400e-02;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=-5.070e-01;SOR=0.268;VQSLOD=1.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,423:424:99:12296,1258,0
chr1	22310674	rs7538207	C	T	34887.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=404;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.05;SOR=0.984;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,404:404:99:11747,1207,0
chr1	22310725	rs3820287	G	C	25482.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.23;SOR=1.724;VQSLOD=5.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,278:278:99:8591,835,0
chr1	22310824	rs1803531	T	C	6328.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=57.79;POSITIVE_TRAIN_SITE;QD=27.60;SOR=7.476;VQSLOD=7.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1829,153,0
chr1	22313161	rs1803530	T	C	12203.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=58.12;QD=30.97;SOR=1.469;VQSLOD=1.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4438,441,0
chr1	22313197	rs34963341	C	A	8494.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=79;ExcessHet=3.0103;FS=12.423;MQ=55.68;MQRankSum=-4.890e-01;NEGATIVE_TRAIN_SITE;QD=34.67;ReadPosRankSum=1.29;SOR=2.352;VQSLOD=-2.163e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,78:79:99:2643,227,0
chr1	22313371	rs34262568	G	A	89.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=9;ExcessHet=3.0103;FS=2.808;MQ=40.00;MQRankSum=0.00;QD=9.92;ReadPosRankSum=1.51;SOR=0.959;VQSLOD=-5.187e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:98:98,0,225
chr1	22313521	rs71638814	G	T	765.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156e+00;DB;DP=67;ExcessHet=3.0103;FS=2.072;MQ=52.75;MQRankSum=0.562;NEGATIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=0.238;SOR=0.450;VQSLOD=-2.861e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,33:67:99:774,0,862
chr1	22313646	rs56302995	GA	G	2803.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.88;QD=28.90;SOR=3.056;VQSLOD=4.19;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,25:25:75:741,75,0
chr1	22313689	rs6426736	A	T	2161.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=30.86;SOR=5.174;VQSLOD=5.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:448,33,0
chr1	22324705	rs7534936	T	C	848.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.770e-01;DB;DP=78;ExcessHet=3.0103;FS=0.860;MQ=59.57;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.566;SOR=0.527;VQSLOD=3.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,36:78:99:857,0,1087
chr1	22324930	rs12032777	A	T	68.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:77:77,0,104
chr1	22328279	rs12751986	C	T	1882.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.121;SOR=0.713;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,69:130:99:1891,0,1590
chr1	22329414	rs10917107	G	A	10923.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193e+00;DB;DP=89;ExcessHet=3.0103;FS=25.181;MQ=58.53;MQRankSum=7.89;POSITIVE_TRAIN_SITE;QD=31.48;ReadPosRankSum=-1.318e+00;SOR=2.076;VQSLOD=-5.033e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,58:89:99:1759,0,1124
chr1	22329417	rs7533677	T	C	647.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.551e+00;DB;DP=91;ExcessHet=3.0103;FS=19.437;MQ=53.90;MQRankSum=-8.192e+00;POSITIVE_TRAIN_SITE;QD=7.11;ReadPosRankSum=1.12;SOR=0.459;VQSLOD=-4.297e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,31:91:99:656,0,2410
chr1	22329687	rs4381156	C	T	222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=48.89;MQRankSum=-4.541e+00;QD=4.45;ReadPosRankSum=1.30;SOR=0.386;VQSLOD=-4.349e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,11:50:99:231,0,1416
chr1	22333209	rs71827034	CAATAAT	C	3195.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=47.13;MQRankSum=-1.593e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=-2.820e-01;SOR=4.892;VQSLOD=0.518;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,8:9:15:0|1:22333209_CAATAAT_C:375,0,15:22333209
chr1	22333228	rs55724481	A	G	4029.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=49.42;MQRankSum=-2.016e+00;NEGATIVE_TRAIN_SITE;QD=29.82;ReadPosRankSum=1.89;SOR=3.430;VQSLOD=-2.973e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,12:16:99:0|1:22333209_CAATAAT_C:534,0,129:22333209
chr1	22333231	rs61778020	A	G	4235.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=50.39;MQRankSum=-1.907e+00;NEGATIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=1.53;SOR=3.611;VQSLOD=-2.872e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,13:17:99:0|1:22333209_CAATAAT_C:613,0,123:22333209
chr1	22333234	rs7543775	A	G	4306.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=51.20;MQRankSum=-1.926e+00;NEGATIVE_TRAIN_SITE;QD=26.64;ReadPosRankSum=1.49;SOR=3.403;VQSLOD=-2.545e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,15:20:99:0|1:22333209_CAATAAT_C:610,0,157:22333209
chr1	22333595	rs3820290	G	A	17910.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=183;ExcessHet=3.0103;FS=3.184;MQ=53.68;MQRankSum=-8.126e+00;POSITIVE_TRAIN_SITE;QD=30.99;ReadPosRankSum=-6.000e-03;SOR=1.175;VQSLOD=-2.373e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:89,94:183:99:2883,0,2481
chr1	22336254	rs113856986	C	T	2572.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=228;ExcessHet=3.0103;FS=1.589;MQ=59.99;MQRankSum=-1.009e+00;QD=11.28;ReadPosRankSum=-2.900e-01;SOR=0.735;VQSLOD=0.237;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:116,112:228:99:2581,0,2614
chr1	22336277	rs3820285	C	G	18190.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.80;SOR=0.859;VQSLOD=4.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,229:229:99:7021,687,0
chr1	22336371	rs3806297	C	A	8029.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.96;DB;DP=125;ExcessHet=3.0103;FS=7.095;MQ=54.16;MQRankSum=0.967;NEGATIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=-1.032e+00;SOR=1.133;VQSLOD=-1.738e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,55:125:99:1497,0,1651
chr1	22336810	rs11412547	C	CA	4581.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=78;ExcessHet=3.0103;FS=1.392;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.36;ReadPosRankSum=1.14;SOR=0.882;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,31:78:99:649,0,1115
chr1	22408106	rs2501282	G	A	8676.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=0.754;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2785,270,0
chr1	22446768	rs34228276	G	A	7232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DB;DP=569;ExcessHet=3.0103;FS=1.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.990;SOR=0.551;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:283,286:569:99:7241,0,7294
chr1	22447148	rs12756110	G	C	2625.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.500e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=0.292;SOR=0.908;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1069,87,0
chr1	22447523	rs10753529	G	A	737.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=0.549;SOR=0.941;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:414,33,0
chr1	22447645	rs41420150	C	CTG	2771.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=35;ExcessHet=6.9897;FS=1.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=-6.680e-01;SOR=0.490;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,20:35:99:899,0,553
chr1	22448217	rs12131703	C	T	336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=-4.500e-01;SOR=0.793;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:345,0,278
chr1	22453626	rs6676241	T	C	580.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.57;ReadPosRankSum=0.687;SOR=0.515;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:384,0,150
chr1	22453842	rs6678992	T	C	2739.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;DB;DP=111;ExcessHet=3.9794;FS=9.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.676;SOR=1.273;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,56:111:99:1438,0,1315
chr1	22453975	rs2235527	C	G	3118.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.520e-01;DB;DP=110;ExcessHet=3.9794;FS=3.189;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.773;SOR=0.508;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,63:110:99:1648,0,1183
chr1	22454001	rs2235526	T	C	2731.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;DB;DP=93;ExcessHet=3.9794;FS=0.572;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.085;SOR=0.758;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,50:93:99:1332,0,1045
chr1	22454261	rs6679479	T	A	145.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=0.967;SOR=1.863;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:54:104,0,54
chr1	22454325	rs2235525	G	A	148.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.17;SOR=3.258;VQSLOD=18.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	22456050	rs115547783	G	C	664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.632e+00;DB;DP=32;ExcessHet=3.0103;FS=3.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=2.31;SOR=2.348;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:673,0,469
chr1	22816233	rs10799756	C	T	349.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.91;ReadPosRankSum=1.01;SOR=0.446;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:93:146,0,93
chr1	22816262	rs1267005	T	C	692.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562e+00;DB;DP=13;ExcessHet=1.5490;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=0.832;SOR=0.275;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:204,0,245
chr1	22827931	rs4655071	C	T	2557.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.780e-01;DB;DP=61;ExcessHet=1.5490;FS=5.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=-7.810e-01;SOR=0.351;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:632,0,906
chr1	22832743	rs209732	A	T	649.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=0.816;SOR=0.892;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:105,0,138
chr1	22835677	rs209729	A	G	5298.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.270e-01;DB;DP=57;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=1.54;SOR=0.504;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1832,171,0
chr1	22837586	rs34404742	CT	C	469.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;DB;DP=40;ExcessHet=6.9897;FS=4.274;MQ=59.52;MQRankSum=-3.330e-01;POSITIVE_TRAIN_SITE;QD=4.75;ReadPosRankSum=-7.620e-01;SOR=1.247;VQSLOD=-3.600e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,10:40:99:109,0,503
chr1	22837849	rs209727	C	T	1308.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=3.737;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:531,42,0
chr1	22844297	rs3066614	ATCT	A	381.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.85;SOR=4.615;VQSLOD=4.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	22846452	rs7551801	C	G	1961.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.67;SOR=4.091;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:734,57,0
chr1	22846709	rs209720	G	A	7997.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.99;SOR=1.553;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2619,261,0
chr1	22848972	rs61769198	A	C	2985.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.811e+00;DB;DP=67;ExcessHet=1.5490;FS=1.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=0.329;SOR=0.537;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1985,201,0
chr1	22902523	rs11580191	C	T	323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-4.400e-01;SOR=0.430;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:332,0,476
chr1	22912793	rs80128156	GC	G	343.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.980e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-6.820e-01;SOR=0.495;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,13:25:99:352,0,318
chr1	22912819	rs639519	T	C	2438.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.35;SOR=2.336;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:999,93,0
chr1	22912865	rs537426	A	G	1750.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.481e+00;DB;DP=40;ExcessHet=6.9897;FS=0.841;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=0.341;SOR=0.807;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:611,0,509
chr1	22913153	rs638058	T	C	11069.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=295;ExcessHet=6.9897;FS=1.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=1.53;SOR=0.827;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,141:295:99:3819,0,3686
chr1	22913274	rs60166039	G	GGGGT	288.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273e+00;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.44;ReadPosRankSum=-1.716e+00;SOR=0.432;VQSLOD=6.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,16:53:99:297,0,1801
chr1	22915753	rs606002	T	C	9875.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=214;ExcessHet=6.9897;FS=1.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-6.450e-01;SOR=0.856;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,104:214:99:2790,0,2820
chr1	22915891	rs200753371	A	T	2478.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=65;ExcessHet=3.9794;FS=0.686;MQ=60.00;MQRankSum=0.00;QD=17.58;ReadPosRankSum=1.35;SOR=0.620;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,27:65:99:700,0,1049
chr1	22915978	rs521570	A	T	1022.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493e+00;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.667;SOR=0.603;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,7:24:99:214,0,583
chr1	22922026	rs209693	T	G	705.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=15;ExcessHet=3.9794;FS=6.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.057;SOR=0.073;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:206,0,331
chr1	22922546	rs209692	G	A	674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321e+00;DB;DP=22;ExcessHet=3.9794;FS=1.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.02;SOR=0.456;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:368,0,245
chr1	22922560	rs209691	G	A	1153.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-3.800e-01;SOR=0.722;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:442,0,353
chr1	22922722	rs71638849	T	C	843.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.190e-01;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-1.266e+00;SOR=0.816;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,36:55:99:852,0,384
chr1	22923873	rs999765	G	C	1930.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=112;ExcessHet=3.0103;FS=4.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=-9.420e-01;SOR=0.931;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,63:112:99:1939,0,1388
chr1	22924464	rs12404556	T	C	1050.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=-2.000e-01;SOR=0.704;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,30:54:99:1059,0,739
chr1	22925292	rs664340	C	G	12670.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.681;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4573,450,0
chr1	22925613	rs663002	C	A	264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.367e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.996;SOR=0.465;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:273,0,463
chr1	22927314	rs209702	A	G	6516.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=135;ExcessHet=6.9897;FS=5.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-4.600e-01;SOR=1.124;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,76:135:99:2284,0,1706
chr1	22927326	rs209701	T	G	4692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.92;DB;DP=150;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-5.700e-02;SOR=0.709;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,81:150:99:2418,0,1990
chr1	22928265	rs209700	A	G	6754.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=89;ExcessHet=3.9794;FS=1.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=1.19;SOR=0.789;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,49:89:99:1369,0,953
chr1	22928349	rs209699	A	G	676.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.114e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-9.790e-01;SOR=0.446;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:463,0,419
chr1	22965438	rs172378	A	G	21808.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-02;DB;DP=313;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=0.297;SOR=0.660;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:159,154:313:99:3922,0,4219
chr1	22970828	rs666656	G	T	3060.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DB;DP=40;ExcessHet=3.0103;FS=3.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=0.988;SOR=0.392;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:582,0,590
chr1	22974297	rs9434	C	A	5229.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.455e+00;DB;DP=57;ExcessHet=3.0103;FS=3.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=-1.330e+00;SOR=1.519;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,31:57:99:912,0,834
chr1	22974379	rs142916975	CCCACCAGATGGACTTCT	C	496.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.92;ReadPosRankSum=-1.282e+00;SOR=2.985;VQSLOD=4.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:75:165,0,75
chr1	22985785	rs56917855	A	AGATG	1076.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DB;DP=15;ExcessHet=3.9794;FS=6.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=0.069;SOR=2.557;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,11:15:99:489,0,150
chr1	22985839	rs140338008	AGATG	A	2440.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=22;ExcessHet=3.0103;FS=4.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.90;ReadPosRankSum=0.070;SOR=1.997;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,15:22:99:609,0,238
chr1	22987958	rs10580	A	G	7536.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.69;SOR=2.698;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1974,165,0
chr1	23101688	rs1561624	T	G	6234.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=1.65;SOR=1.209;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1931,144,0
chr1	23107811	.	TAA	T,TA	2525.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.025;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.84;MQRankSum=0.00;QD=22.16;ReadPosRankSum=1.61;SOR=0.910;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,13,27:47:99:956,496,561,293,0,214
chr1	23108089	rs2817904	A	G	2236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.70;POSITIVE_TRAIN_SITE;QD=26.12;SOR=5.820;VQSLOD=5.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:820,63,0
chr1	23219493	rs309472	T	C	31537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=356;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=0.724;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,356:356:99:10880,1067,0
chr1	23221855	rs77501996	A	G	1164.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;DB;DP=84;ExcessHet=3.0103;FS=6.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-1.316e+00;SOR=0.229;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,41:84:99:1173,0,1345
chr1	23285678	rs309510	A	G	331.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=4.615;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	23286224	rs11577583	T	C	955.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.340e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.83;ReadPosRankSum=1.40;SOR=2.694;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
chr1	23286752	rs751168	T	G	1409.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.42;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.04;ReadPosRankSum=0.619;SOR=1.314;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:511,39,0
chr1	23289397	rs10799776	G	A	431.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.87;SOR=4.977;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:193,15,0
chr1	23289568	rs10799777	T	C	3488.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.080e-01;DB;DP=52;ExcessHet=3.0103;FS=1.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=1.06;SOR=0.965;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1632,156,0
chr1	23291582	rs4655138	G	A	1809.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.029e+00;DB;DP=23;ExcessHet=3.0103;FS=3.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=1.84;SOR=0.259;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:799,69,0
chr1	23337885	.	CT	C	70.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e-01;DP=10;ExcessHet=3.9794;FS=5.643;MQ=60.00;MQRankSum=0.00;QD=3.19;ReadPosRankSum=0.648;SOR=0.031;VQSLOD=4.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:44:44,0,120
chr1	23342193	rs10917344	C	G	1054.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=13;ExcessHet=3.0103;FS=2.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=-9.450e-01;SOR=2.066;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:469,39,0
chr1	23342362	rs681648	A	G	4596.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.634;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=0.340;SOR=0.671;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1578,147,0
chr1	23380198	rs579785	A	G	2215.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=0.747;SOR=0.846;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:706,51,0
chr1	23381795	rs11380187	A	AT	1212.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.65;ReadPosRankSum=0.00;SOR=3.737;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
chr1	23382729	rs763310	A	G	1121.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.923e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-6.190e-01;SOR=2.303;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr1	23384537	rs2869044	C	T	87.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.90;SOR=0.693;VQSLOD=18.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
chr1	23398065	rs12409321	C	T	483.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.21;ReadPosRankSum=-1.006e+00;SOR=2.049;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr1	23399932	rs967605	C	T	3717.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.936e+00;DB;DP=38;ExcessHet=3.0103;FS=7.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=1.04;SOR=0.302;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1211,114,0
chr1	23405794	rs2072945	A	C	3548.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.499e+00;DB;DP=42;ExcessHet=3.0103;FS=3.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.90;ReadPosRankSum=-1.568e+00;SOR=0.447;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1331,126,0
chr1	23405865	rs72657829	A	C	1576.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=1.378;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1593,140,0
chr1	23407712	rs2072943	G	C	395.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=-1.440e+00;SOR=2.147;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	23409538	rs2235546	G	A	3196.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.53;DB;DP=34;ExcessHet=3.0103;FS=2.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.97;ReadPosRankSum=0.799;SOR=0.467;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1345,102,0
chr1	23418153	rs10799790	C	T	15041.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.244e+00;DB;DP=187;ExcessHet=3.0103;FS=1.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=-4.900e-02;SOR=0.952;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,187:187:99:5964,561,0
chr1	23419261	rs477717	G	A	12538.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.420e-01;DB;DP=151;ExcessHet=3.0103;FS=0.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=1.30;SOR=0.790;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4980,453,0
chr1	23419374	rs3765407	G	T	17240.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.13;ReadPosRankSum=1.32;SOR=0.643;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,175:175:99:1|1:23419374_G_T:7639,529,0:23419374
chr1	23419383	rs477830	C	T	17008.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.660e-01;DB;DP=170;ExcessHet=3.0103;FS=1.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.00;ReadPosRankSum=0.164;SOR=0.527;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,170:170:99:1|1:23419374_G_T:7512,521,0:23419374
chr1	23419855	rs1983965	T	C	10815.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.060e-01;DB;DP=130;ExcessHet=3.0103;FS=2.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=1.84;SOR=0.518;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4098,389,0
chr1	23664511	rs11586100	T	G	1238.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486e+00;DB;DP=20;ExcessHet=3.9794;FS=3.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=0.454;SOR=0.201;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:438,0,162
chr1	23688933	rs2849028	A	G	11452.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=163;ExcessHet=3.9794;FS=1.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=1.36;SOR=0.580;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,101:163:99:2709,0,1624
chr1	23689083	rs3795308	G	A	2366.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=166;ExcessHet=3.0103;FS=1.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=1.28;SOR=0.566;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,91:166:99:2375,0,1927
chr1	23689786	rs35676026	AT	A	121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.47;ReadPosRankSum=-1.510e+00;SOR=1.402;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:51:130,0,51
chr1	23693385	rs618237	T	C	552.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DB;DP=41;ExcessHet=3.0103;FS=1.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-2.289e+00;SOR=1.174;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:561,0,449
chr1	23693422	rs2849025	T	C	4277.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=58;ExcessHet=3.9794;FS=2.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=0.909;SOR=0.897;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:831,0,629
chr1	23694238	rs144926230	C	A	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599e+00;DB;DP=17;ExcessHet=3.0103;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-9.760e-01;SOR=0.096;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:207,0,378
chr1	23696152	rs665977	G	A	4934.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.068;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=-6.510e-01;SOR=0.726;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2307,213,0
chr1	23697617	rs638722	T	C	849.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=-9.600e-02;SOR=0.760;VQSLOD=6.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,31:57:99:858,0,699
chr1	23698120	rs754984	C	G	542.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-4.320e-01;SOR=0.826;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:551,0,511
chr1	23706736	rs664777	T	C	533.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.17;SOR=1.473;VQSLOD=19.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	23707692	rs650102	A	G	361.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.79;SOR=3.258;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:110,9,0
chr1	23710805	rs605468	A	G	8333.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.20;SOR=1.183;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2506,234,0
chr1	23713626	rs1198445	A	G	660.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=1.828;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:431,42,0
chr1	23713952	rs676363	T	G	8400.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=1.165;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2355,213,0
chr1	23720185	rs4648892	C	T	936.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.466e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=0.375;SOR=2.235;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:196,15,0
chr1	23720260	rs2486078	T	G	4421.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.10;SOR=5.650;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1109,78,0
chr1	23724183	rs2275355	C	T	3881.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.600e-02;DB;DP=55;ExcessHet=3.0103;FS=0.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=-8.800e-02;SOR=0.821;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1757,125,0
chr1	23735241	rs1198423	G	T	3213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=0.808;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:745,69,0
chr1	23743581	rs2156087	C	G	4973.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=1.863;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1349,123,0
chr1	23751140	rs71514235	G	T	26974.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.99;DB;DP=319;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.45;ReadPosRankSum=0.538;SOR=0.971;VQSLOD=6.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,318:319:99:9613,945,0
chr1	23755513	rs1198430	T	C	3247.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.64;SOR=1.418;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:801,78,0
chr1	23755716	rs1198431	T	C	200.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.78;SOR=3.611;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	23756155	rs1198432	T	C	413.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=4.804;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	23756695	rs1198433	A	G	1571.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.67;SOR=2.833;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:553,48,0
chr1	23758134	rs1198434	A	G	5173.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=0.731;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1782,177,0
chr1	23758496	rs200506893	G	GAT	54.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.05;ReadPosRankSum=-1.960e+00;SOR=0.132;VQSLOD=4.88;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:63:0|1:23758496_G_GAT:63,0,66:23758496
chr1	23758499	rs72661455	T	A	95.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=6;ExcessHet=6.9897;FS=2.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.79;ReadPosRankSum=1.96;SOR=1.609;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:59:1|0:23758496_G_GAT:59,0,63:23758496
chr1	23760408	rs1207124	A	G	619.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.88;SOR=1.244;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	23762679	rs12401753	A	G	2518.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.37;SOR=3.056;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:905,72,0
chr1	23764149	rs2297841	C	G	1692.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.53;SOR=6.091;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:281,21,0
chr1	23765472	rs1767148	A	G	6165.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.08;SOR=1.882;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1641,126,0
chr1	23767348	.	CAAA	C	150.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;SOR=0.941;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:2:106,2,0
chr1	23769359	rs946269	T	C	2115.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.55;SOR=1.999;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:540,48,0
chr1	23803138	rs10917388	A	G	1782.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=7.569;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:463,33,0
chr1	23810360	rs6686497	T	C	162.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.42;SOR=1.981;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	23810658	rs71514236	G	A	2063.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.35;SOR=1.644;VQSLOD=19.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:711,63,0
chr1	23836364	rs2075993	A	G	3768.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=97;ExcessHet=3.9794;FS=3.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.899;SOR=0.509;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,42:97:99:968,0,1329
chr1	23847464	rs2075995	C	A	3313.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=48;ExcessHet=3.9794;FS=2.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=1.12;SOR=0.813;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,18:48:99:432,0,857
chr1	23847709	rs2075996	C	G	786.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=12;ExcessHet=3.9794;FS=9.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=-6.760e-01;SOR=2.439;VQSLOD=16.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:175,0,231
chr1	23885230	rs2067054	C	G	674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=34;ExcessHet=3.9794;FS=5.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.559;SOR=1.661;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:274,0,586
chr1	23885498	rs11574	T	C	6928.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=1.147;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3870,366,0
chr1	23885599	rs2067053	T	C	4148.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.11;DB;DP=144;ExcessHet=3.9794;FS=3.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=1.06;SOR=0.900;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,68:144:99:2043,0,2125
chr1	23885912	rs146156581	C	T	3301.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.820e-01;DB;DP=263;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.55;ReadPosRankSum=0.130;SOR=0.695;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,127:263:99:3310,0,3654
chr1	23886037	rs181251708	G	A	269.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.463e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.61;MQRankSum=-1.316e+00;NEGATIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=0.675;SOR=0.260;VQSLOD=-1.297e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,11:32:99:278,0,791
chr1	23886073	rs2742946	T	C	1166.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.60;MQRankSum=0.00;QD=27.78;ReadPosRankSum=0.435;SOR=0.760;VQSLOD=3.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:87:306,0,87
chr1	23908221	rs10634856	C	CT,CTT	395.66	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.211;DB;DP=13;ExcessHet=3.9794;FS=1.880;MQ=58.68;MQRankSum=-4.900e-01;QD=11.64;ReadPosRankSum=1.30;SOR=0.305;VQSLOD=0.067;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,3,4:13:13:175,67,82,13,0,50
chr1	23918955	rs370770971	CT	C	712.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DB;DP=52;ExcessHet=3.9794;FS=6.992;MQ=60.00;MQRankSum=0.00;QD=7.19;ReadPosRankSum=0.674;SOR=1.395;VQSLOD=4.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:46,6:52:11:11,0,1081
chr1	23954126	rs10627687	T	TAC	1959.29	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.390e-01;DB;DP=27;ExcessHet=3.9794;FS=2.031;MQ=60.00;MQRankSum=0.00;QD=21.30;ReadPosRankSum=-2.320e-01;SOR=0.986;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,25:27:7:827,7,0
chr1	23954524	.	CT	C	127.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.73;MQRankSum=0.00;QD=6.69;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:63:63,0,102
chr1	23967159	rs1317345	G	A	189.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=1.981;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr1	24018277	rs10917413	C	G	7334.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=0.711;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1938,186,0
chr1	24018951	rs182840394	T	G	190.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.020e-01;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=-7.280e-01;SOR=0.148;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:199,0,130
chr1	24022437	rs2280437	A	G	10069.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-01;DB;DP=173;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=1.09;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=0.769;SOR=0.696;VQSLOD=2.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:85,88:173:99:1997,0,2152
chr1	24077206	rs141965202	ATCT	A	390.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.96;ReadPosRankSum=0.195;SOR=0.693;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:399,0,308
chr1	24082401	rs35273670	C	T	804.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.31;SOR=0.807;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,31:56:99:813,0,590
chr1	24104932	.	A	G	60.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.05;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,113
chr1	24106510	rs3831910	A	AT	1096.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;DB;DP=25;ExcessHet=3.9794;FS=8.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=0.797;SOR=2.391;VQSLOD=4.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,12:25:99:315,0,350
chr1	24122986	rs760941	C	T	737.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429e+00;DB;DP=22;ExcessHet=1.5490;FS=4.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=-4.270e-01;SOR=2.998;VQSLOD=18.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:273,0,350
chr1	24124801	.	CT	C	145.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DP=25;ExcessHet=6.9897;FS=1.467;MQ=60.00;MQRankSum=0.00;QD=2.39;ReadPosRankSum=0.150;SOR=0.412;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,3:25:4:4,0,412
chr1	24133612	rs1018396	G	A	2891.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DB;DP=88;ExcessHet=1.5490;FS=2.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-3.380e+00;SOR=0.507;VQSLOD=22.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:55,33:88:99:773,0,1381
chr1	24134462	rs719399	C	T	1027.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=5.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=0.666;SOR=3.551;VQSLOD=15.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:106,0,109
chr1	24134721	rs719400	T	C	11008.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=182;ExcessHet=3.9794;FS=0.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.244;SOR=0.644;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,84:182:99:2158,0,2518
chr1	24143932	rs2076344	A	G	2028.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=1.48;SOR=0.656;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:503,0,293
chr1	24151996	rs6697805	C	A	3096.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=32;ExcessHet=1.5490;FS=10.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=1.54;SOR=2.344;VQSLOD=16.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:435,0,452
chr1	24164398	rs11800561	T	G	156.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=1.65;SOR=1.609;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:81,0,62
chr1	24172765	rs11456086	C	CT	187.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=9;ExcessHet=6.9897;FS=4.212;MQ=60.00;MQRankSum=0.00;QD=5.70;ReadPosRankSum=0.00;SOR=1.702;VQSLOD=4.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:72:72,0,102
chr1	24180806	rs55699941	TA	T	798.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=35;ExcessHet=6.9897;FS=13.053;MQ=59.46;MQRankSum=0.00;QD=7.99;ReadPosRankSum=0.318;SOR=2.213;VQSLOD=0.139;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,16:35:99:315,0,391
chr1	24192200	rs34902309	A	G	2241.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DB;DP=44;ExcessHet=6.9897;FS=3.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-3.500e-01;SOR=0.444;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,27:44:99:799,0,445
chr1	24192379	rs74937660	G	C	514.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270e+00;DB;DP=11;ExcessHet=6.9897;FS=9.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-2.630e-01;SOR=3.572;VQSLOD=11.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:148,0,175
chr1	24192453	rs74223776	T	C	298.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=0.524;SOR=0.836;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:80,0,34
chr1	24194748	rs2070956	G	C	5061.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.783e+00;DB;DP=93;ExcessHet=6.9897;FS=3.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=1.51;SOR=0.960;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,48:93:99:0|1:24194748_G_C:1564,0,1522:24194748
chr1	24194773	rs2070955	G	A	3767.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.241e+00;DB;DP=51;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=0.386;SOR=0.740;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,26:51:99:0|1:24194748_G_C:1063,0,1116:24194748
chr1	24194788	rs2070954	A	G	3229.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.768e+00;DB;DP=42;ExcessHet=6.9897;FS=2.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=-3.560e-01;SOR=0.284;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,24:42:99:0|1:24194748_G_C:936,0,804:24194748
chr1	24194862	rs2070953	A	C	728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.229e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-4.700e-01;SOR=0.501;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:297,0,209
chr1	24194898	rs2070952	C	A	343.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=10;ExcessHet=6.9897;FS=3.010;MQ=60.00;MQRankSum=0.00;QD=13.76;ReadPosRankSum=-1.036e+00;SOR=1.880;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:183,0,166
chr1	24200800	rs1105	T	C	323.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-2.720e-01;SOR=0.387;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:60:60,0,231
chr1	24200903	rs2229586	G	C	682.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e-01;DB;DP=22;ExcessHet=3.9794;FS=5.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=1.10;SOR=1.734;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,5:22:99:0|1:24200903_G_C:159,0,1013:24200903
chr1	24200921	rs2229585	T	C	1543.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=33;ExcessHet=6.9897;FS=8.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.041;SOR=1.721;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,9:33:99:0|1:24200903_G_C:295,0,1199:24200903
chr1	24200969	rs2229584	T	C	2955.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480e-01;DB;DP=58;ExcessHet=6.9897;FS=7.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=-7.720e-01;SOR=1.232;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,20:58:99:0|1:24200969_T_C:763,0,1906:24200969
chr1	24200983	rs2229583	C	T	3363.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=67;ExcessHet=6.9897;FS=11.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-8.480e-01;SOR=1.373;VQSLOD=16.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,27:67:99:0|1:24200969_T_C:951,0,1962:24200969
chr1	24201094	rs2229581	G	C	5905.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=154;ExcessHet=6.9897;FS=1.807;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.590;SOR=0.872;VQSLOD=5.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,73:154:99:1971,0,2095
chr1	24201109	rs2229580	C	T	6335.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.000e-03;DB;DP=164;ExcessHet=6.9897;FS=1.829;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.343;SOR=0.863;VQSLOD=6.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,78:164:99:2086,0,2244
chr1	24201162	rs2229579	G	A	8067.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.498e+00;DB;DP=211;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.139;SOR=0.688;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,127:211:99:3042,0,2454
chr1	24201262	rs2502993	A	G	10303.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DB;DP=294;ExcessHet=6.9897;FS=1.097;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.308;SOR=0.784;VQSLOD=6.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:160,134:294:99:3494,0,4151
chr1	24201357	rs4649124	A	G	8824.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.05;DB;DP=210;ExcessHet=6.9897;FS=2.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.118;SOR=0.522;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,105:210:99:2894,0,2875
chr1	24201448	rs3003336	C	T	6374.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.588e+00;DB;DP=158;ExcessHet=6.9897;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.206;SOR=0.634;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,72:158:99:1905,0,2437
chr1	24201643	rs2501431	G	A	4550.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.526e+00;DB;DP=131;ExcessHet=6.9897;FS=1.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-2.060e-01;SOR=0.759;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,59:131:99:1539,0,2172
chr1	24201919	rs2502992	T	C	9613.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=138;ExcessHet=6.9897;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=0.995;SOR=0.591;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,76:138:99:0|1:24201919_T_C:2994,0,3811:24201919
chr1	24201920	rs2501432	T	C	9613.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009e+00;DB;DP=138;ExcessHet=6.9897;FS=1.727;MQ=60.00;MQRankSum=0.00;QD=21.41;ReadPosRankSum=0.888;SOR=0.582;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,76:138:99:0|1:24201919_T_C:2994,0,3811:24201919
chr1	24287227	rs146117441	C	T	969.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=13;ExcessHet=3.0103;FS=2.811;MQ=60.00;MQRankSum=0.00;QD=29.39;ReadPosRankSum=1.04;SOR=1.897;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:430,39,0
chr1	24287780	rs148750403	GCTT	G	833.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.730e-01;DB;DP=15;ExcessHet=3.9794;FS=4.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=1.43;SOR=1.578;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,2:15:45:45,0,533
chr1	24287812	rs113073624	GTTA	G	328.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=1.23;SOR=0.148;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,9:11:57:337,0,57
chr1	24288404	rs76630293	A	G	292.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=55.54;MQRankSum=-2.410e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=-3.660e-01;SOR=1.179;VQSLOD=-4.385e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:57:57,0,182
chr1	24288432	rs115735413	C	T	358.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=55.90;MQRankSum=-3.660e-01;NEGATIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.319;SOR=0.914;VQSLOD=-2.440e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:56:56,0,202
chr1	24288476	rs72540327	T	C	71.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:26:79,0,26
chr1	24294249	rs146630384	C	T	8630.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.428;DB;DP=116;ExcessHet=3.0103;FS=0.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=-1.830e-01;SOR=0.758;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3434,347,0
chr1	24294362	rs145308205	A	T	5957.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DB;DP=82;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.05;ReadPosRankSum=0.183;SOR=0.662;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,49:82:99:1284,0,755
chr1	24294450	.	CA	C	1640.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DP=32;ExcessHet=3.9794;FS=3.317;MQ=60.00;MQRankSum=0.00;QD=14.78;ReadPosRankSum=-1.550e-01;SOR=1.144;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,13:32:99:240,0,196
chr1	24294587	rs145191744	G	A	212.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155e+00;DB;DP=30;ExcessHet=3.0103;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=-1.249e+00;SOR=0.343;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:221,0,557
chr1	24294627	rs115208097	C	T	1098.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.73;ReadPosRankSum=0.990;SOR=0.843;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:343,0,114
chr1	24298263	rs116679590	T	C	3145.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552e+00;DB;DP=26;ExcessHet=3.9794;FS=11.956;MQ=60.00;MQRankSum=0.00;QD=24.39;ReadPosRankSum=0.127;SOR=0.118;VQSLOD=15.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:320,0,381
chr1	24298595	rs142193174	T	C	69.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:78,0,32
chr1	24301685	rs114213119	C	A	2161.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DB;DP=36;ExcessHet=3.9794;FS=1.702;MQ=60.00;MQRankSum=0.00;QD=18.64;ReadPosRankSum=1.34;SOR=0.949;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:280,0,621
chr1	24301721	rs145233262	T	C	2182.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.723;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.07;ReadPosRankSum=-1.710e-01;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:999,75,0
chr1	24305397	rs142675257	T	C	698.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=42;ExcessHet=3.0103;FS=2.759;MQ=60.00;MQRankSum=0.00;QD=16.63;ReadPosRankSum=1.28;SOR=1.179;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:707,0,409
chr1	24306518	rs373561984	G	A	100.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.07;ReadPosRankSum=-5.240e-01;SOR=0.223;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:109,0,72
chr1	24307021	rs147475579	C	A	186.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.31;ReadPosRankSum=0.063;SOR=0.473;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:195,0,298
chr1	24383819	rs7540491	T	C	2133.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=33;ExcessHet=3.0103;FS=1.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=0.737;SOR=0.458;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:372,0,614
chr1	24388371	rs4649168	T	C	7058.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=1.760;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2571,240,0
chr1	24389509	rs67138023	GAA	G	1210.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=5.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.37;ReadPosRankSum=0.00;SOR=0.141;VQSLOD=6.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:74:204,0,74
chr1	24390731	rs7555384	C	T	1296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180e-01;DB;DP=59;ExcessHet=6.9897;FS=0.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=-1.130e-01;SOR=0.789;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:618,0,756
chr1	24392374	rs200161481	C	T	1886.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500e-01;DB;DP=145;ExcessHet=3.0103;FS=4.954;MQ=60.00;MQRankSum=0.00;QD=13.01;ReadPosRankSum=-1.126e+00;SOR=1.089;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,75:145:99:1895,0,1788
chr1	24393656	rs12026723	G	A	4629.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870e-01;DB;DP=151;ExcessHet=6.9897;FS=1.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.535;SOR=0.604;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,78:151:99:1852,0,1717
chr1	24393729	rs11249090	G	A	3186.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=56;ExcessHet=3.9794;FS=2.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.97;ReadPosRankSum=0.151;SOR=1.024;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:747,0,768
chr1	24393795	rs76424049	C	T	111.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.13;ReadPosRankSum=0.204;SOR=0.412;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:24393795_C_T:120,0,241:24393795
chr1	24393799	rs55716180	T	C	214.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.90;ReadPosRankSum=-8.720e-01;SOR=0.368;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:24393795_C_T:120,0,241:24393795
chr1	24395003	rs6660675	T	G	1405.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.69;ReadPosRankSum=0.349;SOR=0.535;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:374,0,122
chr1	24400430	rs6675170	A	T	1961.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=6.479;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:577,45,0
chr1	24400584	rs6660949	G	C	12435.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=1.104;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4212,396,0
chr1	24400633	rs10903083	C	G	15346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=0.887;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4950,456,0
chr1	24406535	rs35446243	G	A	4912.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.630e-01;DB;DP=197;ExcessHet=3.9794;FS=0.387;MQ=59.99;MQRankSum=1.14;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-1.860e-01;SOR=0.722;VQSLOD=2.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:103,94:197:99:2354,0,2613
chr1	24406647	rs4649175	G	A	13260.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.180e-01;DB;DP=260;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=1.54;SOR=0.695;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,117:260:99:2724,0,3582
chr1	24408015	rs10903090	C	G	5322.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=77;ExcessHet=3.9794;FS=1.109;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=0.724;SOR=0.585;VQSLOD=6.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,37:77:99:913,0,917
chr1	24408237	rs4266831	A	G	132.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.282e+00;SOR=0.412;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,114
chr1	24408414	rs4313343	C	T	405.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=3.442;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr1	24408765	rs4333801	T	C	1331.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=19;ExcessHet=3.9794;FS=11.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-2.110e-01;SOR=2.008;VQSLOD=16.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:166,0,386
chr1	24409191	rs4320729	C	T	4161.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=102;ExcessHet=6.9897;FS=2.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-6.630e-01;SOR=0.784;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,52:102:99:1359,0,1183
chr1	24410751	rs10903093	T	C	2947.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e-01;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=1.42;SOR=0.632;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:321,0,288
chr1	24413159	rs6424152	T	C	10987.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=171;ExcessHet=3.9794;FS=1.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.518;SOR=0.865;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,90:171:99:2343,0,2069
chr1	24413427	rs6686608	T	G	1764.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.40;DB;DP=33;ExcessHet=6.9897;FS=3.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-7.780e-01;SOR=1.710;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:520,0,533
chr1	24413531	rs6678938	C	T	356.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=0.601;SOR=1.244;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,153
chr1	24416059	rs4393101	T	C	10845.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=1.468;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3818,366,0
chr1	24416070	rs7533060	G	C	9269.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.960e-01;DB;DP=138;ExcessHet=3.0103;FS=4.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=0.597;SOR=1.001;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,67:138:99:1617,0,1765
chr1	24416807	rs12042188	C	T	392.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=4.804;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:409,30,0
chr1	24418768	rs7556176	T	C	2277.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048e+00;DB;DP=65;ExcessHet=6.9897;FS=4.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-3.540e-01;SOR=1.098;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,33:65:99:844,0,710
chr1	24419302	rs4075565	A	G	476.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-1.335e+00;SOR=0.693;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:188,0,217
chr1	24419496	rs4233050	A	G	5702.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DB;DP=182;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.808;SOR=0.646;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,80:182:99:1879,0,2420
chr1	24421334	rs6678411	G	T	2830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.759e+00;DB;DP=75;ExcessHet=6.9897;FS=2.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.428;SOR=0.548;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1029,0,925
chr1	24421474	rs6678540	G	A	3581.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DB;DP=137;ExcessHet=6.9897;FS=4.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=7.000e-03;SOR=0.936;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,57:137:99:1203,0,1951
chr1	24421643	rs4520362	T	C	861.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634e+00;DB;DP=19;ExcessHet=6.9897;FS=6.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-3.720e-01;SOR=0.123;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:235,0,372
chr1	24421804	rs11249142	A	G	185.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.07;SOR=0.569;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:35:72,0,35
chr1	24421875	rs11249143	C	T	603.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-02;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.328;SOR=0.631;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:300,0,403
chr1	24421950	rs4319261	C	G	1797.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=53;ExcessHet=6.9897;FS=4.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-4.410e-01;SOR=1.066;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:553,0,673
chr1	24424241	rs3885698	T	C	79.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.431;SOR=1.022;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,139
chr1	24432810	rs4593753	T	C	1598.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=4.664;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:644,51,0
chr1	24434595	rs11249170	T	C	12445.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=189;ExcessHet=3.0103;FS=0.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=-5.980e-01;SOR=0.872;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,86:189:99:2250,0,2593
chr1	24434717	rs11447181	T	TC	710.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=50;ExcessHet=3.0103;FS=6.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.401;SOR=2.303;VQSLOD=5.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,28:50:99:719,0,535
chr1	24447214	rs3795300	G	A	5166.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DB;DP=73;ExcessHet=3.9794;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.50;ReadPosRankSum=0.877;SOR=0.627;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,43:73:99:1047,0,657
chr1	24448084	rs17852648	G	A	2114.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e-01;DB;DP=138;ExcessHet=3.0103;FS=5.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.833;SOR=0.579;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,82:138:99:2123,0,1361
chr1	24448371	rs4442319	T	C	899.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=-7.790e-01;SOR=1.542;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:91:91,0,415
chr1	24454902	rs79895649	C	T	746.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-01;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=-3.080e-01;SOR=0.502;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,25:39:99:755,0,352
chr1	24460797	rs17852649	T	G	2356.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=105;ExcessHet=3.9794;FS=2.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-1.640e-01;SOR=0.891;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,48:105:99:1242,0,1328
chr1	24463563	rs4486393	C	T	1575.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=52;ExcessHet=3.9794;FS=6.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=1.26;SOR=1.702;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,29:52:99:974,0,596
chr1	24464006	.	CT	CTT,C	757.47	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.556;DP=19;ExcessHet=3.9794;FS=4.974;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.459;SOR=0.140;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,10:19:99:310,224,299,107,0,157
chr1	24465113	rs10903022	C	T	9380.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.77;DB;DP=147;ExcessHet=3.9794;FS=0.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=0.459;SOR=0.597;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,79:147:99:2201,0,1500
chr1	24465309	rs10794642	C	T	1372.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=0.439;SOR=1.493;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:258,0,181
chr1	24483491	rs7536412	A	G	395.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.94;ReadPosRankSum=0.674;SOR=2.670;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr1	24484441	rs946671	A	G	4519.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.590e-01;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=-9.780e-01;SOR=0.636;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1673,162,0
chr1	24485518	rs10751769	T	C	3226.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.040e-01;DB;DP=40;ExcessHet=3.0103;FS=6.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.31;ReadPosRankSum=-5.050e-01;SOR=1.615;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1424,120,0
chr1	24485813	rs4649194	T	C	3735.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.236e+00;DB;DP=45;ExcessHet=3.0103;FS=0.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=-5.900e-01;SOR=0.681;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1651,135,0
chr1	24485941	rs4649195	T	C	3295.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.880e-01;DB;DP=87;ExcessHet=6.9897;FS=2.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.141;SOR=0.560;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,39:87:99:957,0,1316
chr1	24486216	rs34545094	GT	G,GTTTTGTTTTTTTTGTTTT	2050.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.61;DB;DP=22;ExcessHet=3.0103;FS=6.812;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=0.297;SOR=2.274;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,9,13:22:99:736,508,488,257,0,369
chr1	24487760	rs7552000	T	C	2345.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=28;ExcessHet=3.0103;FS=1.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.96;ReadPosRankSum=0.483;SOR=0.931;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1030,84,0
chr1	24506861	rs3897440	T	C	329.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=4.407;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	24507433	rs6680101	A	G	1621.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.470e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=0.705;SOR=1.412;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:24507433_A_G:646,45,0:24507433
chr1	24507437	rs6665649	G	A	1565.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=0.952;SOR=2.147;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:42:1|1:24507433_A_G:621,42,0:24507433
chr1	24513608	rs12094257	C	T	607.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=1.68;SOR=0.665;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:342,27,0
chr1	24513768	rs4090311	G	A	2692.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.82;POSITIVE_TRAIN_SITE;QD=29.27;SOR=1.880;VQSLOD=4.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:824,80,0
chr1	24513924	rs66499832	AGG	A	587.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.65;ReadPosRankSum=1.59;SOR=2.093;VQSLOD=6.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,8:9:16:276,16,0
chr1	24663184	rs34637004	T	C	3099.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740e-01;DB;DP=257;ExcessHet=3.0103;FS=0.453;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-5.540e-01;SOR=0.653;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:132,125:257:99:3108,0,3304
chr1	24671418	rs116396279	A	G	438.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-7.210e-01;SOR=0.776;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:447,0,249
chr1	24687653	rs532147	T	C	1252.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=-3.510e-01;SOR=1.309;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:215,0,291
chr1	24690414	rs542969	A	G	1163.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136e+00;DB;DP=17;ExcessHet=3.9794;FS=2.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=1.58;SOR=1.463;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:283,0,237
chr1	24690764	rs545809	T	A	3733.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=112;ExcessHet=3.9794;FS=4.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-1.980e-01;SOR=0.942;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,57:112:99:1333,0,1327
chr1	24718079	rs560219	C	A	3456.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=115;ExcessHet=3.9794;FS=4.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=1.08;SOR=0.634;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,67:115:99:1610,0,1086
chr1	24718318	rs3215501	T	TA	178.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.48;SOR=2.584;VQSLOD=5.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chr1	24727678	rs2078445	C	T	2433.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DB;DP=32;ExcessHet=1.5490;FS=1.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.35;ReadPosRankSum=-7.100e-01;SOR=1.022;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:542,0,373
chr1	24768778	rs4648863	G	C	1731.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.610e-01;DB;DP=40;ExcessHet=1.5490;FS=1.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.258;SOR=0.374;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:622,0,575
chr1	24775967	rs4648989	G	A	2628.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=99;ExcessHet=3.9794;FS=1.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-3.400e-01;SOR=0.857;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,46:99:99:1135,0,1464
chr1	24779873	rs1883462	C	T	1529.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.88;DB;DP=59;ExcessHet=3.9794;FS=5.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=1.63;SOR=1.326;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,30:59:99:820,0,755
chr1	24780356	rs11249117	C	A	472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-1.890e-01;SOR=0.859;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:160,0,187
chr1	24780521	rs67528293	CT	C	540.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.795;SOR=0.760;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,9:13:60:194,0,60
chr1	24784197	rs195718	T	C	1512.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DB;DP=80;ExcessHet=3.9794;FS=0.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=-8.170e-01;SOR=0.776;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,29:80:99:732,0,1405
chr1	24792617	rs195725	T	A	4196.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=0.978;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1690,172,0
chr1	24840768	rs196403	G	A	588.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.92;SOR=4.174;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr1	24859617	rs196429	G	A	996.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=36;ExcessHet=3.9794;FS=4.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=1.41;SOR=1.144;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:318,0,600
chr1	24859665	rs196430	G	A	1410.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-2.530e-01;SOR=0.699;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:530,0,842
chr1	24861704	rs196432	G	A	3906.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.499e+00;DB;DP=94;ExcessHet=1.5490;FS=5.034;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=-1.399e+00;SOR=0.407;VQSLOD=7.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2724,279,0
chr1	24921758	rs12354378	C	T	95.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:104,0,101
chr1	24922056	rs12353957	T	C	1253.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=91;ExcessHet=3.0103;FS=0.803;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.894;SOR=0.861;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,50:91:99:1262,0,953
chr1	24922129	rs10903095	G	A	2406.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.46;DB;DP=42;ExcessHet=3.9794;FS=1.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=0.740;SOR=1.022;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1483,126,0
chr1	24927561	rs4553122	T	C	4858.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=85;ExcessHet=3.9794;FS=1.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=0.084;SOR=0.790;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,40:85:99:1058,0,1022
chr1	24927625	rs4378146	C	A	2497.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030e-01;DB;DP=70;ExcessHet=6.9897;FS=1.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=1.22;SOR=0.806;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,36:70:99:864,0,838
chr1	24989762	rs4649011	G	T	4061.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=1.629;VQSLOD=19.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1127,105,0
chr1	25098245	rs9332415	T	C	5472.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.60;SOR=3.581;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1390,123,0
chr1	25098341	rs7548438	C	T	13480.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=1.207;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4330,393,0
chr1	25124053	rs71032862	G	GAA	157.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=59.34;QD=26.22;SOR=3.912;VQSLOD=4.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr1	25153692	rs4649022	G	A	7572.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=0.976;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2340,222,0
chr1	25229390	rs34296216	G	GC	47.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.98;SOR=0.693;VQSLOD=4.69;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr1	25254317	rs7517302	C	T	3897.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.650e+00;DB;DP=61;ExcessHet=3.9794;FS=2.816;MQ=59.77;MQRankSum=0.106;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=1.32;SOR=1.030;VQSLOD=1.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2106,182,0
chr1	25256444	rs71514255	G	A	1844.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.63;ReadPosRankSum=1.34;SOR=0.716;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:98:992,98,0
chr1	25291010	rs6672420	A	T	1340.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.820e-01;DB;DP=77;ExcessHet=3.9794;FS=4.313;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-3.400e-02;SOR=1.109;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,32:77:99:710,0,1108
chr1	25350186	rs416365	G	C	896.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.04;DB;DP=12;ExcessHet=3.0103;FS=4.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.63;ReadPosRankSum=1.70;SOR=1.765;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:414,36,0
chr1	25554079	rs200794956	AT	A	660.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DB;DP=64;ExcessHet=3.0103;FS=1.052;MQ=60.00;MQRankSum=0.00;QD=10.32;ReadPosRankSum=-2.162e+00;SOR=0.950;VQSLOD=4.84;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:41,23:64:99:669,0,1327
chr1	25570081	rs1043879	T	C	1744.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=69;ExcessHet=3.9794;FS=0.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.853;SOR=0.613;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:856,0,722
chr1	25570550	rs5773124	A	AT	1420.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=18;ExcessHet=3.0103;FS=8.313;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=-5.340e-01;SOR=2.531;VQSLOD=5.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,15:18:26:342,0,26
chr1	25572984	rs34484514	T	G	3757.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=306;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-5.190e-01;SOR=0.668;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:153,151:306:99:3766,0,3635
chr1	25611035	rs2301153	G	C	33044.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=571;ExcessHet=0.4576;FS=0.000;MQ=56.08;QD=32.11;SOR=1.267;VQSLOD=3.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,571:571:99:17858,1712,0
chr1	25617399	rs28521909	T	C	2562.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.37;QD=29.45;SOR=4.370;VQSLOD=4.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:25617399_T_C:806,54,0:25617399
chr1	25617406	rs28562109	G	A	2276.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.27;QD=28.29;SOR=4.047;VQSLOD=3.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:25617399_T_C:720,48,0:25617399
chr1	25629766	rs201798270	TTCTC	T	1226.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=38.90;MQRankSum=0.515;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=-4.500e-02;SOR=0.565;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,32:68:99:1235,0,2007
chr1	25634143	rs2427766	T	C	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DB;DP=41;ExcessHet=3.0103;FS=3.304;MQ=53.20;MQRankSum=-2.712e+00;NEGATIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-1.695e+00;SOR=1.514;VQSLOD=-2.235e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:507,0,640
chr1	25678002	rs66744254	TA	T	1050.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.687;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=2.34;SOR=0.832;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,14:15:19:323,19,0
chr1	25678238	rs3093616	T	A	6791.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.65;ReadPosRankSum=-3.820e-01;SOR=1.553;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2004,180,0
chr1	25687308	rs8876	C	G	76.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.93;ReadPosRankSum=-1.387e+00;SOR=0.368;VQSLOD=22.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,4:26:85:85,0,719
chr1	25735359	rs200955066	G	A	67.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=48.42;QD=33.54;SOR=2.303;VQSLOD=-1.133e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	25735380	rs184592905	T	C	53.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=42.50;MQRankSum=0.00;QD=17.86;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=-4.645e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:61,0,29
chr1	25780668	rs34006994	C	T	2792.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=1.508;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1481,147,0
chr1	25780889	rs141203814	A	ATG	1396.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.85;SOR=4.174;VQSLOD=6.00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:25780889_A_ATG:767,54,0:25780889
chr1	25780893	rs61775167	A	G	1396.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.86;SOR=4.112;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:54:1|1:25780889_A_ATG:767,54,0:25780889
chr1	25780929	rs146881778	ATGTG	A	299.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.26;ReadPosRankSum=0.524;SOR=2.494;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr1	25783066	rs35497030	A	G	778.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=4.804;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:295,24,0
chr1	25785451	rs35530120	A	G	1852.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.375e+00;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.09;ReadPosRankSum=-1.067e+00;SOR=1.352;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,25:26:37:817,37,0
chr1	25810416	rs61775192	A	G	506.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=5.136;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr1	25817705	rs35343405	C	T	107.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=2.833;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	25870018	rs61776820	C	G	1041.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.10;SOR=5.058;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:351,24,0
chr1	25880261	rs34367689	CA	C	308.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e-01;DB;DP=17;ExcessHet=6.9897;FS=1.530;MQ=59.86;MQRankSum=0.00;QD=5.62;ReadPosRankSum=0.094;SOR=1.075;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:103,0,128
chr1	25889342	rs10687390	CAG	C	8805.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=1.851;VQSLOD=6.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3815,256,0
chr1	25889422	rs12096438	C	T	5866.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=0.706;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2762,225,0
chr1	25889632	rs6687605	T	C	5377.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.40;ReadPosRankSum=-4.320e-01;SOR=1.538;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2695,258,0
chr1	25889672	rs6688931	G	A	3373.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=56;ExcessHet=0.4576;FS=3.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.53;ReadPosRankSum=-6.800e-01;SOR=2.027;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1793,168,0
chr1	25889917	rs6701596	T	C	1599.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.629;DB;DP=10;ExcessHet=3.0103;FS=4.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=-9.130e-01;SOR=3.080;VQSLOD=18.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:400,30,0
chr1	25890050	rs6661159	A	G	5754.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.680e-01;DB;DP=98;ExcessHet=0.4576;FS=0.000;MQ=59.90;MQRankSum=-8.700e-02;POSITIVE_TRAIN_SITE;QD=34.67;ReadPosRankSum=-1.630e-01;SOR=0.590;VQSLOD=3.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3426,294,0
chr1	25890189	rs28969504	A	G	12648.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.254e+00;DB;DP=214;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=-1.708e+00;SOR=0.732;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,214:214:99:6441,641,0
chr1	25890247	rs41291058	C	T	2275.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=174;ExcessHet=3.0103;FS=3.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-5.300e-02;SOR=0.934;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,93:174:99:2284,0,2118
chr1	26073443	rs2786876	T	C	1551.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.74;ReadPosRankSum=0.225;SOR=1.057;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:516,36,0
chr1	26076062	rs760602	C	G	274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:71:145,0,71
chr1	26085048	rs11321223	AG	A	7148.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.716;DB;DP=92;ExcessHet=3.0103;FS=2.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=0.956;SOR=0.554;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2905,276,0
chr1	26085398	rs12130495	G	T	669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.330e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.462;SOR=0.869;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:215,0,218
chr1	26089977	.	CAAAA	C,CAAA	717.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.09;DP=15;ExcessHet=3.9794;FS=10.498;MQ=59.94;MQRankSum=0.00;QD=15.26;ReadPosRankSum=0.887;SOR=2.419;VQSLOD=2.28;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,3,5:15:76:264,76,235,143,0,146
chr1	26090072	rs807270	A	G	5230.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.429e+00;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=-5.490e-01;SOR=0.681;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2147,207,0
chr1	26090285	rs807269	T	G	2368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.280e-01;DB;DP=76;ExcessHet=3.9794;FS=4.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.66;SOR=1.123;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1121,0,1107
chr1	26098107	rs2072747	G	A	1075.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=37;ExcessHet=3.9794;FS=12.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-4.950e-01;SOR=2.073;VQSLOD=14.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,10:37:99:261,0,746
chr1	26098333	rs807264	G	A	3133.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.643;DB;DP=37;ExcessHet=3.0103;FS=1.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=-1.160e+00;SOR=0.418;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1281,111,0
chr1	26098350	rs807263	G	A	1310.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=26;ExcessHet=6.9897;FS=1.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-6.440e-01;SOR=0.484;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:392,0,516
chr1	26107321	rs807274	A	C	1421.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=17;ExcessHet=3.0103;FS=4.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.02;ReadPosRankSum=-4.960e-01;SOR=0.166;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:597,51,0
chr1	26107688	rs807273	C	A	8123.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.020e-01;DB;DP=106;ExcessHet=3.0103;FS=2.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=-5.020e-01;SOR=0.644;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3291,316,0
chr1	26109237	rs12567324	A	G	2030.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010e-01;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-2.020e-01;SOR=0.647;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,38:69:99:1027,0,952
chr1	26109307	rs2072746	G	C	793.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.52;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=-3.420e-01;SOR=0.984;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:549,0,173
chr1	26110065	rs3820514	A	G	2278.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=92;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.28;SOR=0.714;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,50:92:99:1250,0,996
chr1	26110143	rs3767877	G	A	3480.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=151;ExcessHet=3.9794;FS=1.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.164;SOR=0.578;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,74:151:99:1865,0,1819
chr1	26127202	rs6676342	T	G	676.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.24;ReadPosRankSum=0.00;SOR=0.871;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:26127202_T_G:117,0,226:26127202
chr1	26127203	rs6676343	T	C	676.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.85;ReadPosRankSum=-1.890e-01;SOR=1.244;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:26127202_T_G:117,0,226:26127202
chr1	26127425	rs6659086	G	A	902.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.792e+00;DB;DP=26;ExcessHet=3.9794;FS=1.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-5.280e-01;SOR=0.312;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:566,0,314
chr1	26128307	rs10902683	C	T	1011.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=9;ExcessHet=3.9794;FS=2.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=0.936;SOR=0.299;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:136,0,180
chr1	26128484	.	CT	C	39.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DP=24;ExcessHet=3.9794;FS=2.409;MQ=60.00;MQRankSum=0.00;QD=0.88;ReadPosRankSum=0.460;SOR=1.094;VQSLOD=5.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,3:24:6:6,0,449
chr1	26131654	rs7349185	G	A	3149.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712e+00;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=1.95;SOR=0.750;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,18:48:99:435,0,897
chr1	26136452	rs6686366	A	C	4222.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.574e+00;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=0.153;SOR=2.079;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,22:44:99:702,0,802
chr1	26138136	rs760598	C	A	22289.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593e+00;DB;DP=452;ExcessHet=3.9794;FS=0.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.663;SOR=0.611;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:254,198:452:99:4447,0,6459
chr1	26138262	rs760597	T	C	17098.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=275;ExcessHet=3.9794;FS=2.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=-2.100e-01;SOR=0.517;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:147,128:275:99:3280,0,4008
chr1	26138451	rs11247744	A	G	1208.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.00;ReadPosRankSum=-2.560e-01;SOR=2.613;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:133,0,171
chr1	26139049	.	CACACAA	C	102.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.78;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:99:111,0,239
chr1	26139137	rs10902685	C	T	2363.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=46;ExcessHet=3.9794;FS=0.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=0.873;SOR=0.601;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:685,0,705
chr1	26139392	rs3738451	A	G	4551.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.210e-01;DB;DP=64;ExcessHet=3.9794;FS=12.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=2.40;SOR=0.238;VQSLOD=16.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:862,0,878
chr1	26139444	rs10751726	G	A	2310.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977e+00;DB;DP=34;ExcessHet=3.9794;FS=1.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=-6.560e-01;SOR=0.527;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:451,0,544
chr1	26139879	rs6676413	C	G	1106.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DB;DP=9;ExcessHet=3.9794;FS=5.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.13;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:96:229,0,96
chr1	26139919	rs6676509	C	T	1662.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=23;ExcessHet=3.9794;FS=5.147;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=1.02;SOR=1.390;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:365,0,302
chr1	26140573	rs2294228	C	A	5832.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-02;DB;DP=115;ExcessHet=3.9794;FS=1.866;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=1.38;SOR=0.746;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,58:115:99:1439,0,1424
chr1	26141803	rs12121793	G	T	787.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=4;ExcessHet=3.9794;FS=10.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=0.319;SOR=3.967;VQSLOD=12.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:107,0,33
chr1	26146514	rs1127818	G	C	138.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-9.100e-02;SOR=1.112;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:26146514_G_C:147,0,481:26146514
chr1	26146539	rs2223224	A	C	936.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=15;ExcessHet=3.9794;FS=5.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=1.15;SOR=3.076;VQSLOD=18.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,5:15:99:0|1:26146514_G_C:177,0,604:26146514
chr1	26146884	rs984412	C	G	7386.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635e+00;DB;DP=99;ExcessHet=3.9794;FS=4.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=1.09;SOR=0.975;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,54:99:99:1710,0,1369
chr1	26149356	rs3033467	GCT	G	1783.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.73;ReadPosRankSum=1.86;SOR=0.898;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,17:26:99:678,0,375
chr1	26150023	rs11247758	C	T	5459.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=69;ExcessHet=3.9794;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=0.705;SOR=0.631;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,30:69:99:905,0,1036
chr1	26152666	rs6598923	T	C	4162.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761e+00;DB;DP=61;ExcessHet=3.9794;FS=8.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=0.368;SOR=1.446;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,31:61:99:858,0,884
chr1	26152758	rs6598924	A	G	9070.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348e+00;DB;DP=134;ExcessHet=3.9794;FS=1.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.967;SOR=0.781;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,69:134:99:1625,0,1672
chr1	26155806	rs6664610	C	T	609.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=0.180;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:100,0,209
chr1	26158337	rs1961580	C	T	1605.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=0.903;SOR=0.824;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:308,0,284
chr1	26158900	rs5773135	A	ACT	315.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=3.332;MQ=60.00;MQRankSum=0.00;QD=31.56;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:29:160,0,29
chr1	26227608	.	CAA	C	696.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.440e-01;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.69;MQRankSum=0.00;QD=13.40;ReadPosRankSum=1.11;SOR=0.610;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:23:99:198,0,213
chr1	26232739	.	G	C	102.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.67;MQRankSum=-6.740e-01;QD=17.01;ReadPosRankSum=1.96;SOR=0.693;VQSLOD=-8.042e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:26232739_G_C:108,0,342:26232739
chr1	26232743	.	A	C	97.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=12.21;ReadPosRankSum=1.03;SOR=0.576;VQSLOD=4.80;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:26232739_G_C:105,0,404:26232739
chr1	26232746	.	A	C	96.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.75;MQRankSum=-1.150e+00;QD=12.01;ReadPosRankSum=0.464;SOR=0.169;VQSLOD=-1.055e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:99:0|1:26232739_G_C:102,0,438:26232739
chr1	26310213	rs2275101	T	C	2127.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.142e+00;DB;DP=33;ExcessHet=1.5490;FS=4.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=-1.910e-01;SOR=0.241;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,22:33:99:549,0,315
chr1	26310394	rs2275102	A	G	3044.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=55;ExcessHet=1.5490;FS=2.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.96;ReadPosRankSum=-2.060e-01;SOR=1.006;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,22:55:99:653,0,929
chr1	26310836	rs3738458	G	T	1173.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833e+00;DB;DP=21;ExcessHet=1.5490;FS=1.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=1.27;SOR=0.495;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:284,0,373
chr1	26314564	rs2245979	T	C	1232.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.61;ReadPosRankSum=-7.900e-02;SOR=1.609;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:187,0,142
chr1	26314625	rs2257255	G	A	297.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440e-01;DB;DP=26;ExcessHet=3.0103;FS=1.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-7.720e-01;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:306,0,384
chr1	26349967	rs1938405	C	T	3242.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=57;ExcessHet=1.5490;FS=3.370;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=-1.222e+00;SOR=0.379;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:839,0,842
chr1	26356887	.	G	C	55.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.65;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:64,0,29
chr1	26357656	rs2736831	C	A	14518.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=174;ExcessHet=3.0103;FS=0.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=1.01;SOR=0.608;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,173:174:99:5120,509,0
chr1	26357855	rs2802321	A	G	12456.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=0.906;VQSLOD=19.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4235,393,0
chr1	26358752	rs5773143	T	TA	6745.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.86;SOR=3.307;VQSLOD=5.90;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1211,102,0
chr1	26365374	rs4659404	T	G	4172.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.724;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.68;ReadPosRankSum=0.368;SOR=0.758;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1692,138,0
chr1	26365549	rs2997452	C	T	9778.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.476e+00;DB;DP=124;ExcessHet=3.0103;FS=3.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.87;ReadPosRankSum=-2.178e+00;SOR=0.805;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3930,371,0
chr1	26368787	rs6686468	C	T	719.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=4.407;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:390,30,0
chr1	26369297	rs2997451	T	C	638.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=5.549;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:293,21,0
chr1	26370164	rs11585142	G	A	2077.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.27;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.01;ReadPosRankSum=0.680;SOR=0.848;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:728,54,0
chr1	26371788	rs3121763	G	A	1401.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.83;SOR=4.743;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:467,33,0
chr1	26372144	rs6686190	A	G	10005.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=3.767;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3827,288,0
chr1	26372605	rs6672177	G	C	1683.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=4.047;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:467,39,0
chr1	26387423	rs2997447	G	A	191.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=0.489;SOR=1.402;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:15:199,0,15
chr1	26392824	rs35123100	C	A	1404.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.115e+00;DB;DP=131;ExcessHet=3.0103;FS=0.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-1.004e+00;SOR=0.811;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,61:131:99:1413,0,1940
chr1	26496370	rs2232646	C	T	301.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-1.087e+00;SOR=0.693;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:310,0,315
chr1	26496383	rs2232647	G	T	870.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.39;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=1.16;SOR=0.507;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:425,0,344
chr1	26508538	rs114806650	C	T	958.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.46;DB;DP=28;ExcessHet=3.9794;FS=1.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.080;SOR=0.397;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:567,0,368
chr1	26510336	rs115982258	C	T	1437.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.812;SOR=0.770;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:677,0,608
chr1	26511139	rs2297711	G	A	802.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e-01;DB;DP=29;ExcessHet=3.9794;FS=6.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.315;SOR=1.593;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:290,0,610
chr1	26511515	rs374437043	C	T	792.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.20;ReadPosRankSum=0.044;SOR=0.606;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:801,0,855
chr1	26511700	rs2783680	A	G	4632.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719e+00;DB;DP=129;ExcessHet=6.9897;FS=2.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-6.820e-01;SOR=0.562;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,61:129:99:1462,0,1735
chr1	26514111	.	CTT	C,CT	762.22	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.370e-01;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.59;MQRankSum=0.00;QD=12.70;ReadPosRankSum=0.424;SOR=1.501;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,5,12:20:40:275,154,217,46,0,40
chr1	26515529	rs11278474	ACCAGACT	A	1473.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=4.112;VQSLOD=5.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:226,15,0
chr1	26515956	rs1045105	C	A	6454.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.730e-01;DB;DP=295;ExcessHet=3.9794;FS=1.748;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.19;SOR=0.771;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:172,123:295:99:2756,0,4266
chr1	26517667	rs11247864	T	C	2284.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=35;ExcessHet=3.9794;FS=2.226;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.480;SOR=1.140;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:549,0,486
chr1	26520292	rs12138368	G	T	831.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DB;DP=75;ExcessHet=3.0103;FS=1.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=-9.600e-02;SOR=0.709;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,32:75:99:840,0,1115
chr1	26524016	rs10902719	T	A	484.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.81;SOR=3.611;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	26524706	rs9970046	A	G	16349.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=0.756;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4911,414,0
chr1	26526554	rs6700024	G	A	1707.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=143;ExcessHet=3.0103;FS=3.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-8.520e-01;SOR=1.055;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,70:143:99:1716,0,1792
chr1	26527207	rs66472967	GGGCCTTA	G	60.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=0.842;SOR=0.223;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:69:69,0,452
chr1	26527255	rs12145714	G	A	141.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-1.368e+00;SOR=0.412;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:26527255_G_A:150,0,447:26527255
chr1	26527260	rs12120359	A	G	167.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-1.276e+00;SOR=0.446;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,5:12:99:0|1:26527255_G_A:176,0,475:26527255
chr1	26527304	rs12121284	T	C	327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.344e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-2.840e-01;SOR=0.368;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,9:23:99:0|1:26527304_T_C:336,0,757:26527304
chr1	26527310	rs12118976	C	G	355.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.656e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-1.390e-01;SOR=0.387;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,10:25:99:0|1:26527304_T_C:364,0,788:26527304
chr1	26527699	rs869139	T	C	882.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=16;ExcessHet=6.9897;FS=6.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=0.187;SOR=1.680;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:260,0,320
chr1	26527809	rs1889755	A	C	321.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-2.520e-01;SOR=0.582;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,9:23:99:0|1:26527809_A_C:330,0,645:26527809
chr1	26527810	rs1889756	G	A	321.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.980e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.85;ReadPosRankSum=0.198;SOR=0.719;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,9:25:99:0|1:26527809_A_C:330,0,645:26527809
chr1	26527863	rs17163674	C	T	2312.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-2.150e-01;SOR=0.734;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,41:71:99:1165,0,1092
chr1	26527884	rs41310785	G	A	998.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e-01;DB;DP=102;ExcessHet=3.0103;FS=3.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.430;SOR=1.195;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,41:102:99:1007,0,2139
chr1	26527951	rs6657616	G	A	1518.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470e+00;DB;DP=146;ExcessHet=3.0103;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-5.720e-01;SOR=0.757;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,66:146:99:1527,0,2044
chr1	26528181	rs370678240	C	CTT	929.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=0.00;QD=28.17;ReadPosRankSum=0.946;SOR=3.306;VQSLOD=4.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:11:7:186,0,7
chr1	26528922	rs10902720	C	G	3071.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=69;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.97;ReadPosRankSum=0.321;SOR=0.768;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2240,207,0
chr1	26529061	rs114100693	G	A	1471.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023e+00;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=2.21;SOR=0.693;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,24:62:99:617,0,1073
chr1	26529121	rs6691747	G	C	2640.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.145;DB;DP=41;ExcessHet=3.9794;FS=1.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=-7.740e-01;SOR=0.579;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1557,123,0
chr1	26566187	rs12134756	G	A	801.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393e+00;DB;DP=45;ExcessHet=3.0103;FS=1.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.093;SOR=1.270;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,27:45:99:810,0,509
chr1	26570993	rs869683	T	A	428.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=0.00;SOR=1.292;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,1:3:31:31,0,75
chr1	26583998	rs4659417	T	C	1101.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.35;SOR=6.666;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:286,21,0
chr1	26597435	rs4659419	G	A	8973.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.40;SOR=0.760;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3356,303,0
chr1	26597673	rs11247894	G	A	1534.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=33;ExcessHet=6.9897;FS=0.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-2.880e-01;SOR=0.553;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:498,0,308
chr1	26601385	rs3795685	G	A	3739.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=50;ExcessHet=3.9794;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=0.849;SOR=0.870;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:753,0,631
chr1	26601774	.	G	GT	311.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.42;ReadPosRankSum=0.460;SOR=0.465;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:138,0,132
chr1	26607123	rs12759434	C	T	721.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=0.319;SOR=3.716;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:156,0,27
chr1	26608769	rs35567724	C	T	1732.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782e+00;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-5.600e-02;SOR=0.645;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,39:61:99:858,0,560
chr1	26608814	rs6672357	A	G	5730.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=30.40;SOR=1.625;VQSLOD=4.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:49:99:2394,168,0
chr1	26608825	.	TGGGGCCG	T	2833.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DP=58;ExcessHet=3.9794;FS=0.622;MQ=59.82;MQRankSum=0.00;QD=16.48;ReadPosRankSum=-7.310e-01;SOR=0.775;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,17:58:99:555,0,1484
chr1	26608835	.	ACCGGGACCGGGACTGGG	A	2841.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DP=69;ExcessHet=3.9794;FS=0.000;MQ=59.83;MQRankSum=0.00;QD=15.44;ReadPosRankSum=1.52;SOR=0.680;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,19:69:99:566,0,1858
chr1	26608865	.	ACC	A	2848.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DP=66;ExcessHet=3.9794;FS=6.823;MQ=59.84;MQRankSum=0.00;QD=22.43;ReadPosRankSum=2.46;SOR=0.285;VQSLOD=3.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,43:66:99:1753,0,905
chr1	26608868	.	GGGACTGGGGCCGGGACCGGGACCGGGAC	G	2782.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.81;DP=80;ExcessHet=3.9794;FS=2.321;MQ=59.86;MQRankSum=0.00;QD=18.42;ReadPosRankSum=2.86;SOR=0.489;VQSLOD=4.80;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,45:80:99:1695,0,1370
chr1	26609093	rs72872912	A	T	8759.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=291;ExcessHet=3.9794;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-7.800e-01;SOR=0.749;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:124,167:291:99:4220,0,3262
chr1	26609259	rs7522905	C	T	12120.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DB;DP=213;ExcessHet=3.9794;FS=0.531;MQ=59.98;MQRankSum=0.840;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=0.674;SOR=0.642;VQSLOD=2.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:118,95:213:99:2458,0,3120
chr1	26609307	rs6598952	G	T	21879.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=209;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.95;ReadPosRankSum=0.854;SOR=0.238;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,209:209:99:6971,628,0
chr1	26610891	rs4332350	A	C	17026.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.35;SOR=0.755;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,166:166:99:4875,498,0
chr1	26612042	rs11247898	A	G	4340.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.39;SOR=1.005;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1388,126,0
chr1	26620489	rs3732416	T	C	1331.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.33;SOR=5.549;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:341,24,0
chr1	26620846	rs3832184	C	CA	13743.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.70;ReadPosRankSum=0.200;SOR=0.897;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4824,379,0
chr1	26620998	rs6695643	A	G	1404.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=7.054;VQSLOD=24.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:502,36,0
chr1	26624327	rs4290051	G	A	1184.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=1.765;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr1	26627283	rs4291487	A	G	2602.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.20;SOR=5.670;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:671,54,0
chr1	26627478	rs2276712	T	C	21595.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.001e+00;DB;DP=241;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=-1.114e+00;SOR=0.265;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,240:241:99:7115,679,0
chr1	26629465	rs11803933	G	C	1978.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=3.538;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:439,42,0
chr1	26646574	rs112252579	G	A	609.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703e+00;DB;DP=22;ExcessHet=3.9794;FS=2.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-3.300e-02;SOR=1.329;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:284,0,476
chr1	26646726	rs1071849	A	G	12167.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.06;SOR=0.792;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,92:92:99:1|1:26646726_A_G:4084,282,0:26646726
chr1	26646730	rs17645	A	G	12259.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.17;SOR=0.840;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,93:93:99:1|1:26646726_A_G:4101,282,0:26646726
chr1	26648551	rs11247913	G	C	24273.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=0.963;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,246:246:99:7608,737,0
chr1	26648826	rs60799739	G	A	2536.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=88;ExcessHet=3.9794;FS=0.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=1.19;SOR=0.843;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,39:88:99:1236,0,1503
chr1	26650550	rs11247915	C	A	3198.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393e+00;DB;DP=94;ExcessHet=6.9897;FS=2.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-1.120e-01;SOR=0.849;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,43:94:99:1163,0,1337
chr1	26654937	rs11589684	G	C	9653.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-1.153e+00;SOR=0.782;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,55:91:99:1495,0,820
chr1	26655208	rs11247916	C	T	2283.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=52;ExcessHet=3.9794;FS=0.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=0.479;SOR=0.880;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,20:52:99:519,0,912
chr1	26655462	rs12057290	C	T	2488.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.053e+00;DB;DP=36;ExcessHet=3.9794;FS=2.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=2.37;SOR=0.483;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:516,0,596
chr1	26658391	rs4659431	A	C	921.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=2.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=0.480;SOR=1.863;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:105,0,189
chr1	26662774	rs7517559	C	T	11927.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=115;ExcessHet=3.0103;FS=1.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.74;ReadPosRankSum=0.073;SOR=0.928;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,52:115:99:1490,0,1699
chr1	26663362	rs10751735	C	T	11331.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984e+00;DB;DP=167;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=0.079;SOR=0.741;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,103:167:99:2614,0,1586
chr1	26665602	rs11247921	G	C	580.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=0.592;SOR=2.093;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:23:233,0,23
chr1	26665991	rs6675432	C	G	1012.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.268e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.09;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=1.17;SOR=1.493;VQSLOD=0.021;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:297,24,0
chr1	26670752	rs11247923	C	T	9097.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.395;DB;DP=217;ExcessHet=1.5490;FS=2.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.121;SOR=0.537;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,217:217:99:6144,646,0
chr1	26671084	rs12562454	G	T	5266.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.056e+00;DB;DP=104;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.453;SOR=0.673;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3228,310,0
chr1	26671248	rs57268417	A	G	5633.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.44;DB;DP=110;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=-1.444e+00;SOR=0.694;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3846,330,0
chr1	26673076	rs11247924	G	A	9163.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.150e-01;DB;DP=207;ExcessHet=1.5490;FS=0.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=0.154;SOR=0.758;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,207:207:99:6265,617,0
chr1	26673108	rs11247925	C	T	7189.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=154;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=0.099;SOR=0.701;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4885,459,0
chr1	26673220	rs11247926	A	G	1826.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.256e+00;DB;DP=34;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=0.175;SOR=2.340;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1347,102,0
chr1	26690864	rs7534104	G	T	276.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=2.24;SOR=0.446;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:99,0,232
chr1	26691286	rs144078461	CCCACCGAGCGCTGGGGTGCCCCAG	C	1866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.12;ReadPosRankSum=-2.800e-02;SOR=0.765;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,49:103:99:1875,0,12858
chr1	26694059	rs75541583	G	C	55.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.89;ReadPosRankSum=0.712;SOR=0.223;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:64:64,0,195
chr1	26694245	rs10794531	T	C	708.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=42;ExcessHet=3.0103;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-3.150e-01;SOR=1.029;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,27:42:99:717,0,306
chr1	26695295	rs6694289	G	A	91.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-9.920e-01;SOR=0.307;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:100,0,179
chr1	26698938	rs6703878	A	G	2483.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=149;ExcessHet=3.0103;FS=1.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=-6.300e-01;SOR=0.821;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,86:149:99:2492,0,1521
chr1	26699051	rs6699091	C	A	2268.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DB;DP=160;ExcessHet=3.0103;FS=1.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-6.810e-01;SOR=0.815;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,91:160:99:2277,0,1565
chr1	26699103	rs11584185	T	C	1688.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.53;DB;DP=103;ExcessHet=3.0103;FS=7.507;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=-8.930e-01;SOR=1.554;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,55:103:99:1697,0,1189
chr1	26699157	rs11247937	T	C	696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.02;DB;DP=33;ExcessHet=3.0103;FS=7.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=1.25;SOR=2.867;VQSLOD=18.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:705,0,400
chr1	26700795	rs7520030	T	C	7538.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=1.079;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2455,236,0
chr1	26738259	rs79830033	C	T	121.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.144;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:130,0,156
chr1	26752129	rs35015532	A	G	90.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.120;SOR=0.283;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:99,0,215
chr1	26752992	rs4659441	T	C	9603.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619e+00;DB;DP=145;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=1.12;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=1.87;SOR=0.757;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:65,80:145:99:2232,0,1714
chr1	26772774	rs149634175	C	G	139.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.140e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.70;ReadPosRankSum=-1.033e+00;SOR=0.693;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:148,0,290
chr1	26856462	rs11800553	T	G	2103.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=0.840;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:734,75,0
chr1	26869610	rs921893	G	A	10320.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.180e-01;DB;DP=151;ExcessHet=3.0103;FS=2.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=1.38;SOR=1.042;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,81:151:99:1963,0,1625
chr1	26872640	rs116133745	G	A	670.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=62;ExcessHet=3.0103;FS=1.032;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=1.06;SOR=0.859;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,28:62:99:679,0,875
chr1	26873245	rs2278978	A	G	4239.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.11;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-1.432e+00;SOR=3.671;VQSLOD=16.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:327,0,435
chr1	26878390	rs11581016	G	A	1179.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.850e-01;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.720;SOR=0.909;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:532,0,933
chr1	26879792	rs4970489	T	C	1547.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-02;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=0.254;SOR=1.569;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:84:84,0,344
chr1	26879920	rs4970490	T	C	7808.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=1.096;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2122,224,0
chr1	26881858	rs11247964	C	T	1965.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434e+00;DB;DP=66;ExcessHet=3.9794;FS=3.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.945;SOR=0.450;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,37:66:99:1117,0,866
chr1	26883511	rs2229712	A	C	2040.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.720e-01;DB;DP=246;ExcessHet=3.0103;FS=0.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=0.463;SOR=0.633;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,94:246:99:2049,0,3895
chr1	26899687	rs282178	C	A	1023.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378e+00;DB;DP=59;ExcessHet=3.0103;FS=4.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=-3.980e-01;SOR=0.297;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,40:59:99:1032,0,482
chr1	26900428	rs34694705	C	CA	638.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.620e-01;DB;DP=33;ExcessHet=3.9794;FS=5.307;MQ=59.99;MQRankSum=0.00;QD=10.64;ReadPosRankSum=0.260;SOR=0.188;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,20:33:99:407,0,245
chr1	26900708	rs2229714	G	A	5010.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=191;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.185;SOR=0.701;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,96:191:99:2511,0,2375
chr1	26900735	rs282179	C	G	12795.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022e+00;DB;DP=153;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=-1.324e+00;SOR=0.655;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,79:153:99:2022,0,2061
chr1	26900805	rs12121702	G	A	1485.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=42;ExcessHet=3.9794;FS=1.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.721;SOR=1.003;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:617,0,757
chr1	26900920	rs12118436	A	T	786.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.510e-01;DB;DP=44;ExcessHet=3.9794;FS=1.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.752;SOR=0.680;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:542,0,514
chr1	27106975	rs149633292	C	T	2435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460e-01;DB;DP=171;ExcessHet=3.0103;FS=4.462;MQ=60.00;MQRankSum=0.00;QD=14.24;ReadPosRankSum=1.91;SOR=0.517;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,90:171:99:2444,0,2173
chr1	27210530	rs373357961	CA	C	53.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=55.50;MQRankSum=0.842;QD=5.94;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=0.405;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:1:35,0,1
chr1	27210721	rs3170660	T	C	4493.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.690e-01;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-1.207e+00;SOR=0.748;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,16:43:99:385,0,755
chr1	27215784	rs910048	C	T	565.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.59;POSITIVE_TRAIN_SITE;QD=35.68;SOR=2.985;VQSLOD=4.97;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	27220020	rs58363686	CT	C	231.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.72;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.42;ReadPosRankSum=1.31;SOR=0.892;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:74:75,0,74
chr1	27238150	rs7504	A	G	1353.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=5.549;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:508,36,0
chr1	27278521	rs3010110	G	A	6514.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076e+00;DB;DP=103;ExcessHet=3.9794;FS=0.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=2.08;SOR=0.768;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,49:103:99:1149,0,1355
chr1	27278553	rs3010109	G	A	6931.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300e-01;DB;DP=102;ExcessHet=3.9794;FS=2.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=1.16;SOR=0.544;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,50:102:99:1206,0,1296
chr1	27320356	rs6689941	T	C	7752.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.70;SOR=1.161;VQSLOD=18.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2620,272,0
chr1	27426796	rs4266911	T	C	4854.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200e-01;DB;DP=76;ExcessHet=3.0103;FS=3.205;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=-2.538e+00;SOR=0.377;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2413,228,0
chr1	27427041	rs4418629	T	C	13818.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.333;DB;DP=199;ExcessHet=3.0103;FS=0.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-9.020e-01;SOR=0.765;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,199:199:99:6281,597,0
chr1	27609980	rs6670124	T	G	15405.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.31;SOR=0.998;VQSLOD=4.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:4574,469,0
chr1	27610069	rs10902656	C	T	6340.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.324e+00;DB;DP=66;ExcessHet=3.0103;FS=1.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=-8.360e-01;SOR=0.876;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2334,198,0
chr1	27622596	rs4970517	A	G	2109.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=7.864;VQSLOD=24.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:566,42,0
chr1	27659965	rs6687283	C	T	2525.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.91;SOR=8.287;VQSLOD=24.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:516,39,0
chr1	27677066	rs41291092	A	C	1189.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=1.20;SOR=0.625;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1198,0,877
chr1	27684396	rs4970520	G	A	1379.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.37;SOR=3.086;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1396,111,0
chr1	27684895	rs143620501	G	A	1283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.620e-01;DB;DP=107;ExcessHet=3.0103;FS=1.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.453;SOR=0.911;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,50:107:99:1292,0,1602
chr1	27686063	rs7521552	G	C	10236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=1.324;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3320,303,0
chr1	27696011	rs10218730	C	T	8353.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.09;SOR=4.417;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2703,219,0
chr1	27699449	rs10794501	A	T	1748.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.15;ReadPosRankSum=0.319;SOR=2.546;VQSLOD=6.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:306,0,327
chr1	27709020	rs2504779	T	C	3737.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.241e+00;DB;DP=155;ExcessHet=3.9794;FS=4.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=1.68;SOR=0.494;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,71:155:99:1663,0,2279
chr1	27720178	rs2504786	T	C	1715.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020e-01;DB;DP=31;ExcessHet=6.9897;FS=8.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-9.330e-01;SOR=1.546;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:386,0,546
chr1	27742831	rs743043	G	T	245.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=1.44;SOR=0.818;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:74:74,0,103
chr1	27755511	rs201541202	CT	C	122.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.13;ReadPosRankSum=-5.250e-01;SOR=0.307;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:50:73,0,50
chr1	27875824	rs4908364	C	T	12975.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=1.103;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3669,352,0
chr1	27876482	rs2076457	C	A	12480.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.596;DB;DP=224;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.14;ReadPosRankSum=1.12;SOR=0.739;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,223:224:99:7158,660,0
chr1	27942155	rs2231880	T	G	2616.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=223;ExcessHet=3.0103;FS=7.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-1.653e+00;SOR=1.149;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,97:223:99:2625,0,3410
chr1	27944000	rs1292089	T	A	3325.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.163e+00;DB;DP=32;ExcessHet=3.0103;FS=1.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.51;ReadPosRankSum=-1.254e+00;SOR=0.477;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1108,96,0
chr1	27992800	rs10649401	C	CAA	671.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;DB;DP=15;ExcessHet=6.9897;FS=1.434;MQ=59.44;MQRankSum=-2.720e-01;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=0.493;SOR=1.179;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:15:87:191,0,87
chr1	27993138	rs11280519	A	ATTTTTACC	1865.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.22;SOR=7.476;VQSLOD=6.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr1	27995077	rs56015130	G	T	11912.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.50;DB;DP=115;ExcessHet=3.0103;FS=9.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.46;ReadPosRankSum=0.241;SOR=1.494;VQSLOD=18.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3607,341,0
chr1	27995516	.	CCGCA	C	4102.69	PASS	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MQ=58.09;QD=26.72;SOR=1.440;VQSLOD=3.92;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:27995516_CCGCA_C:1144,78,0:27995516
chr1	27995521	.	TCCTTACCC	T	4145.69	PASS	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MQ=58.07;QD=33.70;SOR=1.440;VQSLOD=4.10;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:27995516_CCGCA_C:1144,78,0:27995516
chr1	27995541	.	TGCATCCTTACCTGCATCCTTACCC	T	4749.69	PASS	AC=2;AF=1.00;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MQ=58.33;QD=32.78;SOR=1.546;VQSLOD=4.54;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,28:28:84:1|1:27995516_CCGCA_C:1242,84,0:27995516
chr1	28081514	.	T	C	242.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.02;ReadPosRankSum=-1.393e+00;SOR=0.693;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:88:251,0,88
chr1	28086955	rs10902671	C	A	4289.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299e+00;DB;DP=48;ExcessHet=3.0103;FS=5.079;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=1.16;SOR=0.300;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1550,144,0
chr1	28144610	.	T	C	53.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.92;ReadPosRankSum=0.319;SOR=0.132;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:62:62,0,208
chr1	28157446	rs41284290	T	G	874.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653e+00;DB;DP=83;ExcessHet=3.0103;FS=0.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=-9.600e-02;SOR=0.864;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,38:83:99:883,0,1221
chr1	28206588	rs12568383	T	C	5443.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738e+00;DB;DP=176;ExcessHet=6.9897;FS=1.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-1.937e+00;SOR=0.776;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,88:176:99:2161,0,2037
chr1	28208312	rs35250731	C	A	222.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.00;SOR=1.270;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:28208312_C_A:110,0,107:28208312
chr1	28208327	rs34631302	A	G	667.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.084;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.38;ReadPosRankSum=-4.310e-01;SOR=2.303;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:28208312_C_A:335,27,0:28208312
chr1	28209305	rs3766398	A	G	8388.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.38;DB;DP=113;ExcessHet=3.0103;FS=4.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=-5.010e-01;SOR=0.455;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3727,339,0
chr1	28209362	rs3766399	T	C	12766.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.79;ReadPosRankSum=-3.590e-01;SOR=0.662;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,124:124:99:1|1:28209362_T_C:5567,376,0:28209362
chr1	28209366	rs3766400	A	G	12819.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.15;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=-6.710e-01;SOR=0.704;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,124:124:99:1|1:28209362_T_C:5529,373,0:28209362
chr1	28211650	rs1467464	T	C	1847.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=20;ExcessHet=3.9794;FS=2.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=1.64;SOR=1.134;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:183,0,400
chr1	28212272	rs11247705	G	A	1714.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940e-01;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=0.169;SOR=0.743;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:199,0,354
chr1	28220484	rs17257252	C	A	530.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.480e-01;DB;DP=48;ExcessHet=3.0103;FS=2.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.455;SOR=0.673;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:539,0,697
chr1	28223824	rs3830900	A	AT	104.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-4.640e-01;SOR=1.609;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:113,0,152
chr1	28223981	rs55902224	TA	T	517.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.16;ReadPosRankSum=0.732;SOR=0.399;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:10:70:70,0,85
chr1	28224312	rs2295367	C	T	1713.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=1.26;SOR=0.663;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:327,0,310
chr1	28261593	rs3737809	T	C	1131.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=50;ExcessHet=3.9794;FS=3.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=2.22;SOR=1.179;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,19:50:99:0|1:28261593_T_C:726,0,1824:28261593
chr1	28261600	rs3737808	A	C	1163.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=52;ExcessHet=3.9794;FS=3.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=1.44;SOR=1.127;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,21:52:99:0|1:28261593_T_C:764,0,1819:28261593
chr1	28261658	rs3831926	T	TG	1220.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.099;SOR=0.664;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,30:74:99:898,0,1425
chr1	28261902	rs3737807	C	A	614.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.824e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-1.255e+00;SOR=0.994;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:324,0,421
chr1	28268573	rs10902678	C	T	1413.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670e-01;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=-6.200e-01;SOR=0.848;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:250,0,179
chr1	28268706	rs4908341	G	A	1090.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680e-01;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=0.715;SOR=0.666;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,26:72:99:634,0,1296
chr1	28268833	rs11386058	C	CG	2148.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211e+00;DB;DP=79;ExcessHet=3.9794;FS=2.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=1.90;SOR=0.522;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,38:79:99:0|1:28268833_C_CG:1461,0,2663:28268833
chr1	28268835	rs5018921	A	C	6542.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=79;ExcessHet=3.9794;FS=0.527;MQ=60.00;MQRankSum=0.00;QD=28.45;ReadPosRankSum=1.83;SOR=0.626;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,38:79:99:0|1:28268833_C_CG:1461,0,2663:28268833
chr1	28282292	rs3813803	T	C	3706.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=116;ExcessHet=3.9794;FS=1.561;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=1.66;SOR=0.810;VQSLOD=6.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:57,59:116:99:1641,0,1464
chr1	28282819	rs4908381	T	C	4670.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=58;ExcessHet=3.0103;FS=5.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=0.792;SOR=0.317;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1989,174,0
chr1	28290231	rs4373781	C	G	4115.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.400e-01;DB;DP=55;ExcessHet=3.0103;FS=1.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=-6.700e-01;SOR=1.046;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1896,165,0
chr1	28323718	rs3831309	TG	T	1111.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=1.05;SOR=0.798;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,15:24:99:534,0,276
chr1	28369279	rs2476547	G	A	807.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=21;ExcessHet=3.9794;FS=3.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.741;SOR=0.248;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:378,0,248
chr1	28422847	rs2989472	C	T	13132.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.876e+00;DB;DP=208;ExcessHet=3.9794;FS=0.567;MQ=59.84;MQRankSum=-1.009e+00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=-3.710e-01;SOR=0.741;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,207:208:99:6477,579,0
chr1	28422967	rs34450732	C	CT	3762.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;DB;DP=198;ExcessHet=3.9794;FS=4.226;MQ=59.94;MQRankSum=0.00;QD=9.00;ReadPosRankSum=-1.417e+00;SOR=1.028;VQSLOD=4.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:102,91:198:99:1826,0,2289
chr1	28527011	rs1049504	A	G	2000.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=46;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-8.800e-02;SOR=0.666;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:585,0,552
chr1	28555426	rs567086	G	A	1002.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=10;ExcessHet=6.9897;FS=4.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.148;SOR=0.148;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:86:224,0,86
chr1	28555564	rs496700	A	C	1223.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-4.780e-01;SOR=0.737;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,51:94:99:1232,0,978
chr1	28559232	rs559509	T	C	770.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-3.420e-01;SOR=0.439;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:172,0,284
chr1	28559574	rs510803	C	G	4750.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=101;ExcessHet=6.9897;FS=0.370;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-5.780e-01;SOR=0.667;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,52:101:99:1386,0,1221
chr1	28559694	rs474597	A	G	1786.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=23;ExcessHet=6.9897;FS=2.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=0.739;SOR=0.428;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:407,0,260
chr1	28562676	rs12154	A	G	5474.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=105;ExcessHet=6.9897;FS=6.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.628;SOR=0.407;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,48:105:99:1477,0,1771
chr1	28564252	rs8559	A	G	2519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=56;ExcessHet=6.9897;FS=5.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=0.015;SOR=1.123;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,29:56:99:776,0,747
chr1	28564279	rs9508	A	G	2739.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.132e+00;DB;DP=74;ExcessHet=6.9897;FS=0.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-3.670e-01;SOR=0.743;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,43:74:99:997,0,732
chr1	28573226	rs546415	A	G	1484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184e+00;DB;DP=119;ExcessHet=3.0103;FS=1.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-8.170e-01;SOR=0.563;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,62:119:99:1493,0,1407
chr1	28573293	rs67092542	G	GA	958.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025e+00;DB;DP=31;ExcessHet=6.9897;FS=2.028;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=-3.600e-01;SOR=1.334;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,10:31:99:182,0,489
chr1	28598020	rs487437	T	C	562.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DB;DP=17;ExcessHet=6.9897;FS=1.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.817;SOR=1.030;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:170,0,229
chr1	28696091	rs11247790	C	A	67.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.82;SOR=2.303;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	28696392	rs6703793	C	G	1351.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=63;ExcessHet=3.9794;FS=0.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-9.820e-01;SOR=0.577;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,36:63:99:924,0,572
chr1	28733759	rs78873359	CA	C	65.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.510e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.06;ReadPosRankSum=0.812;SOR=0.065;VQSLOD=5.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:42:42,0,284
chr1	28733775	rs146400683	A	AG	300.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.72;ReadPosRankSum=1.09;SOR=0.384;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:12:99:125,0,192
chr1	28733993	rs12091029	G	T	2829.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=106;ExcessHet=3.9794;FS=0.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-5.700e-01;SOR=0.794;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,49:106:99:1187,0,1358
chr1	28765094	rs61783845	G	A	359.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.730e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=-1.393e+00;SOR=1.061;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:108,0,109
chr1	28800380	rs61785974	C	A	2360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670e+00;DB;DP=90;ExcessHet=3.9794;FS=5.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.193;SOR=1.091;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,40:90:99:1146,0,1434
chr1	28817597	rs10915235	A	G	1467.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=43;ExcessHet=3.9794;FS=1.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=1.05;SOR=0.504;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:492,0,641
chr1	28822804	rs10915180	T	G	73.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=24.55;SOR=1.179;VQSLOD=17.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr1	28856669	.	CAA	C,CA	184.68	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=7;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.38;SOR=0.941;VQSLOD=4.65;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,3,4:7:87:201,87,159,126,0,114
chr1	28856673	rs76159757	A	C	106.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.23;SOR=1.179;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:28856673_A_C:114,0,159:28856673
chr1	28856675	rs75050531	A	C	106.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.440e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.23;ReadPosRankSum=-3.280e-01;SOR=1.179;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:28856673_A_C:114,0,159:28856673
chr1	28856677	rs80055855	A	C	138.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.80;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:28856673_A_C:146,0,156:28856673
chr1	28856679	rs202151261	A	C	138.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.32;ReadPosRankSum=-5.450e-01;SOR=1.609;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:28856673_A_C:146,0,156:28856673
chr1	28857969	rs4654372	C	G	39.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=19.59;SOR=0.693;VQSLOD=14.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	28861636	rs2066726	G	A	5955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.193e+00;DB;DP=225;ExcessHet=3.9794;FS=2.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-3.410e-01;SOR=0.884;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:127,98:225:99:2622,0,3741
chr1	28863075	rs4654325	A	G	1474.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DB;DP=51;ExcessHet=3.9794;FS=0.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=1.87;SOR=0.561;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:745,0,695
chr1	28887031	rs10915245	A	G	468.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DB;DP=16;ExcessHet=3.9794;FS=1.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=1.82;SOR=1.385;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:95:95,0,346
chr1	28894275	rs9426323	T	A	239.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=1.72;SOR=0.818;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:140,0,108
chr1	28898298	.	A	AAAAAT	48.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-01;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.39;ReadPosRankSum=-9.800e-01;SOR=0.368;VQSLOD=5.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,2:11:57:57,0,462
chr1	28905888	.	CA	C	253.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-01;DP=3;ExcessHet=6.9897;FS=0.000;MQ=59.39;MQRankSum=0.00;QD=10.57;ReadPosRankSum=-4.470e-01;SOR=1.085;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:1:24,0,1
chr1	28918992	rs12123931	C	G	379.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.24;ReadPosRankSum=1.59;SOR=0.560;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:151,0,101
chr1	28920429	rs144161680	A	T	2687.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=231;ExcessHet=3.0103;FS=1.588;MQ=54.46;MQRankSum=-2.389e+00;NEGATIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-1.083e+00;SOR=0.584;VQSLOD=-3.214e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,112:231:99:2696,0,2806
chr1	28931625	rs3795845	T	G	1039.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=39;ExcessHet=3.9794;FS=1.020;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=-2.820e-01;SOR=0.990;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:518,0,642
chr1	28944232	rs4252986	G	A	360.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=1.07;SOR=0.610;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:91:186,0,91
chr1	28995254	rs35229620	T	TGGC	1019.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.69;ReadPosRankSum=0.225;SOR=0.850;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,26:47:99:1028,0,903
chr1	29040799	rs16837667	A	G	2246.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=184;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.21;ReadPosRankSum=-2.760e-01;SOR=0.654;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,86:184:99:2255,0,2568
chr1	29063559	rs6697540	A	C	18095.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=1.223;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,189:189:99:6096,567,0
chr1	29065039	rs6704457	T	C	434.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=1.59;SOR=0.914;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:61:61,0,234
chr1	29068754	rs80290977	G	A	204.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=-5.660e-01;SOR=2.584;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:17:213,0,17
chr1	29138975	rs1042114	G	T	15893.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.555e+00;DB;DP=210;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=-9.230e-01;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=-8.090e-01;SOR=0.620;VQSLOD=2.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,210:210:99:6564,629,0
chr1	29139202	rs112827498	G	T	9228.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.34;DB;DP=193;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=1.25;SOR=0.684;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,191:193:99:6498,529,0
chr1	29139385	rs142483128	C	CCTTGCTT	1814.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.869e+00;DB;DP=28;ExcessHet=1.5490;FS=2.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-1.215e+00;SOR=0.330;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1259,84,0
chr1	29320169	rs57725313	C	CT	167.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.28;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:23:23,0,95
chr1	29345009	rs5773229	C	CTT	1981.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DB;DP=14;ExcessHet=3.0103;FS=2.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=0.566;SOR=1.981;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,10:14:99:402,0,160
chr1	29435829	rs41266199	G	C	449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377e+00;DB;DP=37;ExcessHet=3.0103;FS=1.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-1.413e+00;SOR=0.368;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:458,0,555
chr1	29475341	rs2230678	C	T	3353.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.926e+00;DB;DP=66;ExcessHet=1.5490;FS=5.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=-1.217e+00;SOR=0.324;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2715,199,0
chr1	29475394	rs2230677	C	G	3282.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.980e+00;DB;DP=72;ExcessHet=1.5490;FS=3.183;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=-5.120e-01;SOR=1.140;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2447,215,0
chr1	29475648	rs2230679	T	G	5613.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.151e+00;DB;DP=126;ExcessHet=1.5490;FS=4.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=0.151;SOR=0.418;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4086,378,0
chr1	29508350	rs571016	C	T	2527.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.10;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.54;ReadPosRankSum=0.312;SOR=1.022;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1881,144,0
chr1	29529699	rs1062924	T	C	3995.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.556e+00;DB;DP=92;ExcessHet=1.5490;FS=1.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.200;SOR=0.558;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2600,275,0
chr1	29533080	rs2503017	A	G	878.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.155e+00;DB;DP=19;ExcessHet=1.5490;FS=5.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=-1.700e-01;SOR=0.126;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:591,57,0
chr1	29533601	rs2452785	C	T	1128.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.022e+00;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.51;ReadPosRankSum=-1.629e+00;SOR=0.730;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:821,60,0
chr1	29542435	rs2640469	C	G	5371.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=34.21;SOR=2.288;VQSLOD=4.50;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1466,129,0
chr1	29542637	rs1128400	A	G	3211.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=76;ExcessHet=1.5490;FS=4.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=0.101;SOR=0.418;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,75:76:99:2385,187,0
chr1	29542926	rs3003636	A	T	822.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=1.03;SOR=1.123;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:595,42,0
chr1	29557224	rs2640466	C	T	15538.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.531e+00;DB;DP=426;ExcessHet=1.5490;FS=1.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=0.827;SOR=0.730;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,426:426:99:12440,1264,0
chr1	29563015	rs3103883	G	C	950.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.83;SOR=4.174;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:209,18,0
chr1	29616318	rs2076620	C	A	10630.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918e+00;DB;DP=192;ExcessHet=3.9794;FS=1.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=-2.090e-01;SOR=0.866;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,96:192:99:2242,0,2507
chr1	29630182	rs11590573	T	C	80.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.69;ReadPosRankSum=0.172;SOR=0.582;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:89:89,0,301
chr1	29630455	rs2295061	C	T	1254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.956e+00;DB;DP=80;ExcessHet=3.0103;FS=6.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-6.310e-01;SOR=0.256;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,53:80:99:1263,0,672
chr1	29631050	rs7524056	G	A	2485.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.266e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.87;ReadPosRankSum=-6.200e-02;SOR=3.316;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:965,77,0
chr1	29631236	rs3831903	C	CTA	17955.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.400e-02;DB;DP=234;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=0.591;SOR=0.711;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:126,108:234:99:4119,0,5255
chr1	29633491	rs3835409	T	TCAGCC	508.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=19;ExcessHet=3.9794;FS=1.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=1.18;SOR=1.055;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,5:19:99:168,0,822
chr1	29637136	rs2235939	T	C	1464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=44;ExcessHet=3.9794;FS=7.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=2.19;SOR=0.178;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:760,0,541
chr1	29642318	rs2179795	G	T	490.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.915e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=1.02;SOR=0.783;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:224,0,371
chr1	29649874	rs10915252	T	C	2279.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DB;DP=112;ExcessHet=3.9794;FS=0.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-3.700e-01;SOR=0.643;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,55:112:99:1310,0,1331
chr1	29652068	rs2076618	T	C	2994.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=121;ExcessHet=3.9794;FS=0.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.731;SOR=0.653;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,65:121:99:1706,0,1288
chr1	29675102	rs34208132	CTTTT	C	648.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=7;ExcessHet=3.9794;FS=3.851;MQ=60.00;MQRankSum=0.00;QD=27.04;ReadPosRankSum=1.20;SOR=1.609;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,136
chr1	29696060	rs56203706	T	C	8755.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-02;DB;DP=123;ExcessHet=3.0103;FS=3.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=-1.216e+00;SOR=0.942;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,53:123:99:1202,0,1602
chr1	29842261	rs10915168	A	T	1844.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.89;QD=28.99;SOR=3.014;VQSLOD=2.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:328,27,0
chr1	29845252	.	C	CTCCTCCTTCTCCTCCTCCTCCTCCTCCTTCTCCTCCTTCTCCTTCTTCTCCT	2586.73	PASS	AC=2;AF=1.00;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.10;POSITIVE_TRAIN_SITE;QD=28.17;SOR=4.654;VQSLOD=5.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:63:915,63,0
chr1	31186224	.	GCA	G	523.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=7;ExcessHet=6.9897;FS=3.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=-4.890e-01;SOR=1.814;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:49:49,0,151
chr1	31196255	rs45601237	G	A	257.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;DB;DP=22;ExcessHet=3.0103;FS=5.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-9.910e-01;SOR=2.303;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:266,0,420
chr1	31207781	rs10914189	C	T	1175.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=-1.422e+00;SOR=0.706;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:753,60,0
chr1	31215364	rs1050663	T	C	6933.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970e-01;DB;DP=198;ExcessHet=6.9897;FS=0.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.51;SOR=0.612;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,101:198:99:2496,0,2326
chr1	31230195	rs1407882	T	C	1434.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.75;SOR=3.556;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:460,39,0
chr1	31230668	rs2273979	C	T	1070.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817e+00;DB;DP=39;ExcessHet=3.9794;FS=5.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.381;SOR=0.275;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:458,0,629
chr1	31351513	rs1891419	G	A	9141.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DB;DP=178;ExcessHet=3.9794;FS=1.137;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.585;SOR=0.615;VQSLOD=6.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,88:178:99:2150,0,2185
chr1	31406286	rs58664754	TAC	T	534.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=58.87;MQRankSum=0.606;QD=11.13;ReadPosRankSum=1.23;SOR=0.618;VQSLOD=0.483;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,7:21:99:168,0,353
chr1	31409726	rs56387244	CCT	C	2791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=59;ExcessHet=3.9794;FS=1.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.917;SOR=0.526;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,23:59:99:851,0,1457
chr1	31418119	rs12142833	C	T	1226.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=0.919;SOR=1.022;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,17:20:68:578,0,68
chr1	31426815	rs2275741	A	G	1091.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085e+00;DB;DP=61;ExcessHet=3.9794;FS=0.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=2.19;SOR=0.591;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,19:61:99:453,0,1246
chr1	31438872	rs10798816	G	A	1073.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-7.730e-01;SOR=0.704;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,43:100:99:1082,0,1511
chr1	31440921	rs4317854	G	A	736.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.04;ReadPosRankSum=-1.350e-01;SOR=1.981;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:140,0,103
chr1	31445799	rs6425693	G	T	616.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.01;SOR=5.670;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	31445932	rs2491135	C	G	1414.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.98;ReadPosRankSum=-1.028e+00;SOR=0.800;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:282,0,414
chr1	31446069	rs146432389	TG	T	1641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=32;ExcessHet=3.9794;FS=3.085;MQ=60.00;MQRankSum=0.00;QD=20.77;ReadPosRankSum=-3.580e-01;SOR=1.124;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,16:32:99:0|1:31446069_TG_T:642,0,646:31446069
chr1	31446071	rs368200818	T	A	1641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=33;ExcessHet=3.9794;FS=3.088;MQ=60.00;MQRankSum=0.00;QD=20.51;ReadPosRankSum=-5.590e-01;SOR=1.171;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,17:33:99:0|1:31446069_TG_T:642,0,646:31446069
chr1	31446099	.	TA	T	262.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760e-01;DP=22;ExcessHet=6.9897;FS=2.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.41;ReadPosRankSum=-1.110e-01;SOR=0.437;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:79:79,0,323
chr1	31478638	rs66522510	AAGAGAG	A	3645.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=47;ExcessHet=1.5490;FS=2.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.07;ReadPosRankSum=-8.650e-01;SOR=1.179;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,29:47:99:1131,0,1113
chr1	31479005	rs1337046	C	T	1010.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353e+00;DB;DP=34;ExcessHet=3.9794;FS=2.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-5.400e-01;SOR=0.467;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:313,0,639
chr1	31501755	rs4949331	T	C	1186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=40;ExcessHet=3.9794;FS=6.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=-5.670e-01;SOR=1.770;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:717,0,628
chr1	31654940	rs2297959	C	T	1315.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.481e+00;DB;DP=14;ExcessHet=3.9794;FS=10.438;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.31;ReadPosRankSum=0.386;SOR=0.051;VQSLOD=17.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:148,0,352
chr1	31732390	rs6425725	G	A	897.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=3.180;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:36:325,36,0
chr1	31732602	.	CAA	C,CA	1911.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.482;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;QD=16.06;ReadPosRankSum=1.45;SOR=0.734;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,15:22:74:480,302,317,113,0,74
chr1	31733721	rs140443791	A	AAAG	2033.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=5.376;VQSLOD=6.16;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,14:16:58:758,58,0
chr1	31733782	rs10914338	T	A	5672.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=2.441;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2293,212,0
chr1	31733926	rs12121460	A	G	12446.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=-1.061e+00;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=-1.896e+00;SOR=0.672;VQSLOD=1.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,162:162:99:4798,485,0
chr1	31734033	rs35456520	CA	C	1392.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=34;ExcessHet=0.4576;FS=3.104;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=0.754;SOR=0.322;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,27:34:26:666,26,0
chr1	31740668	rs3753374	C	T	3167.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=1.657;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1398,132,0
chr1	31744168	rs3737755	G	A	1377.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=1.280;VQSLOD=19.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:536,54,0
chr1	31744505	rs113021667	A	ATT	296.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=-6.740e-01;SOR=0.307;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
chr1	31754511	rs4949374	G	C	1943.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.370e-01;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=-1.193e+00;SOR=2.794;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:745,60,0
chr1	31761860	rs7518863	A	G	427.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.63;SOR=2.494;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:271,21,0
chr1	31761936	rs7521463	T	A	1292.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=4.174;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:523,42,0
chr1	31761989	rs1532859	G	A	4129.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=3.338;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1052,95,0
chr1	31762374	rs1532858	C	T	4255.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.600e+00;DB;DP=52;ExcessHet=3.0103;FS=3.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=-3.650e-01;SOR=1.085;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1605,156,0
chr1	31764693	rs12135540	G	A	2643.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=59.76;POSITIVE_TRAIN_SITE;QD=23.71;SOR=5.166;VQSLOD=5.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1118,87,0
chr1	31764713	rs142762586	C	CAAG	3942.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.46;SOR=4.664;VQSLOD=5.18;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1577,108,0
chr1	31764930	rs10733007	T	C	6368.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=2.330;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2080,180,0
chr1	31765968	rs1546375	C	T	2074.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=1.263;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:930,93,0
chr1	31766491	rs1532861	T	C	363.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=4.804;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:229,18,0
chr1	31792141	rs4949384	A	G	1321.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.79;SOR=3.145;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:501,45,0
chr1	31809816	rs6676682	C	T	326.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=2.093;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	31838909	rs10586052	ATGTGTGTGTG	A	1333.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.819;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=-1.000e-01;SOR=2.362;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:49:715,49,0
chr1	31838995	rs905931	T	C	592.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=5.421;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr1	31840426	rs2271072	C	G	2535.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=4.310;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1445,111,0
chr1	31882330	rs1018164	T	G	2214.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.29;SOR=2.621;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:674,63,0
chr1	31897493	rs1320585	A	G	7137.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=2.666;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2378,210,0
chr1	31897963	rs4949209	C	T	1543.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=3.556;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:896,66,0
chr1	31898132	rs4949400	T	C	10144.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=0.4576;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=30.74;SOR=1.107;VQSLOD=5.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4714,456,0
chr1	31898162	rs4949401	C	T	11456.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=0.4576;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=29.45;SOR=0.795;VQSLOD=3.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,179:179:99:5259,534,0
chr1	31898234	rs4949402	T	C	11175.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=1.143;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,164:164:99:5103,492,0
chr1	31898279	rs4949403	A	C	7662.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=1.447;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3667,350,0
chr1	31898463	rs2275436	C	T	1299.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.02;SOR=0.927;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:621,54,0
chr1	31898536	rs2275435	C	T	2819.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=1.497;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1364,120,0
chr1	31898639	rs35976845	C	T	1142.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609e+00;DB;DP=71;ExcessHet=3.0103;FS=2.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-1.940e-01;SOR=1.072;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,43:71:99:1151,0,742
chr1	31898687	rs2275434	C	T	1015.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.173;SOR=0.773;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,39:97:99:1024,0,1496
chr1	31899684	rs10454445	A	T	5516.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.84;SOR=2.607;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1447,120,0
chr1	31899704	rs10454446	C	T	3697.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=32;ExcessHet=3.0103;FS=9.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.56;ReadPosRankSum=-9.470e-01;SOR=0.093;VQSLOD=18.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1200,96,0
chr1	31905730	rs7547845	T	C	2542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.81;POSITIVE_TRAIN_SITE;QD=30.71;SOR=3.750;VQSLOD=5.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:816,63,0
chr1	31905889	rs3050461	A	ACAG	17128.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.040e-01;DB;DP=152;ExcessHet=3.0103;FS=2.645;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.35;ReadPosRankSum=0.196;SOR=0.484;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,152:152:99:7077,484,0
chr1	31906882	rs11587589	A	G	10456.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=1.281;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3128,294,0
chr1	31907102	rs7417775	A	G	4239.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.16;SOR=3.403;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1311,105,0
chr1	31971684	rs1316427	C	G	1360.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=0.819;SOR=0.544;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:262,0,200
chr1	31972099	rs1320587	T	C	909.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=4.892;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr1	31973122	rs112889748	GTGGAGTCTGTC	G	4475.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=56;ExcessHet=3.9794;FS=3.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=0.184;SOR=0.458;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,24:56:99:0|1:31973122_GTGGAGTCTGTC_G:912,0,1399:31973122
chr1	31973138	rs56235358	T	C	4545.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=55;ExcessHet=3.9794;FS=1.214;MQ=60.00;MQRankSum=0.00;QD=25.98;ReadPosRankSum=-1.589e+00;SOR=0.600;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,24:55:99:0|1:31973122_GTGGAGTCTGTC_G:911,0,1391:31973122
chr1	31973215	rs1320577	G	A	2929.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.026e+00;DB;DP=52;ExcessHet=3.9794;FS=6.419;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=-1.800e+00;SOR=1.203;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:773,0,783
chr1	31973266	rs10753250	G	A	3295.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198e+00;DB;DP=61;ExcessHet=3.9794;FS=2.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=-8.000e-03;SOR=0.550;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,33:61:99:863,0,754
chr1	31973348	rs1574106	A	C	4669.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=84;ExcessHet=3.9794;FS=1.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=-1.520e-01;SOR=0.573;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,42:84:99:1018,0,1129
chr1	31973409	rs1574105	G	A	5496.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=107;ExcessHet=3.9794;FS=1.421;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=-1.300e-01;SOR=0.657;VQSLOD=6.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1278,0,1254
chr1	31973440	rs1574104	G	A	5014.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=98;ExcessHet=3.9794;FS=1.453;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=1.39;SOR=0.607;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,43:98:99:999,0,1338
chr1	31973481	rs1573837	C	T	4568.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-01;DB;DP=77;ExcessHet=3.9794;FS=0.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.020;SOR=0.626;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:939,0,995
chr1	31973703	rs1320578	T	C	1255.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=59.78;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=0.789;SOR=0.470;VQSLOD=5.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:303,0,245
chr1	32044641	rs12753402	G	A	1200.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.44;SOR=2.226;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:602,45,0
chr1	32045800	rs12067484	C	*,G	47.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.20;ReadPosRankSum=-2.100e-01;SOR=0.283;VQSLOD=20.93;culprit=QD	GT:AD:DP:GQ:PL	1/2:1,1,4:6:27:86,59,196,31,0,27
chr1	32052145	rs45611233	G	A	190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.347e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-5.370e-01;SOR=0.399;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:199,0,390
chr1	32122424	.	TA	T	432.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540e-01;DP=16;ExcessHet=6.9897;FS=1.281;MQ=59.92;MQRankSum=0.00;QD=8.66;ReadPosRankSum=0.114;SOR=0.414;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:98:98,0,183
chr1	32124034	.	C	T	1392.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;DP=118;ExcessHet=3.0103;FS=1.474;MQ=60.00;MQRankSum=0.00;QD=11.80;ReadPosRankSum=-1.163e+00;SOR=0.515;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,59:118:99:1401,0,1375
chr1	32125943	rs10914462	A	G	245.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.712;SOR=0.818;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:88:88,0,184
chr1	32126135	rs41263967	C	T	1131.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.840e-01;DB;DP=126;ExcessHet=3.0103;FS=0.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=-1.332e+00;SOR=0.801;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,53:126:99:1140,0,1741
chr1	32127953	rs2271928	G	A	2568.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407e+00;DB;DP=76;ExcessHet=3.9794;FS=34.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=1.61;SOR=0.073;VQSLOD=8.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,45:76:99:1251,0,996
chr1	32128283	rs1568396	C	G	953.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DB;DP=38;ExcessHet=3.9794;FS=26.552;MQ=59.83;MQRankSum=1.70;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=1.23;SOR=4.959;VQSLOD=-5.032e+00;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,12:38:99:0|1:32128283_C_G:246,0,996:32128283
chr1	32128285	.	C	G	660.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165e+00;DP=37;ExcessHet=3.0103;FS=11.209;MQ=60.00;MQRankSum=0.00;QD=17.85;ReadPosRankSum=-1.880e+00;SOR=0.030;VQSLOD=15.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,26:37:99:1|0:32128283_C_G:669,0,370:32128283
chr1	32133737	rs2292988	C	T	1193.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=57;ExcessHet=3.9794;FS=0.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.335;SOR=0.815;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,28:57:99:714,0,790
chr1	32136168	rs2292990	G	T	10260.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.99;SOR=1.687;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2856,288,0
chr1	32145009	rs4949461	C	T	11432.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=1.241;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3346,320,0
chr1	32146425	rs11590964	C	T	3222.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141e+00;DB;DP=46;ExcessHet=3.0103;FS=4.183;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-4.390e-01;SOR=1.167;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:379,0,758
chr1	32146764	rs2297684	C	T	1107.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.94;ReadPosRankSum=-1.944e+00;SOR=1.112;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:197,0,189
chr1	32148571	rs10737358	A	G	6712.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=1.249;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2063,201,0
chr1	32149982	rs10914466	A	T	1985.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=0.617;SOR=0.732;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:266,0,409
chr1	32156869	rs10798884	A	T	28784.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=296;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=0.698;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,296:296:99:9481,888,0
chr1	32156940	rs2297680	C	A	5160.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e+00;DB;DP=280;ExcessHet=3.9794;FS=1.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=-3.630e-01;SOR=0.585;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:171,109:280:99:2497,0,4476
chr1	32157009	rs2297679	G	T	4917.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220e+00;DB;DP=233;ExcessHet=3.9794;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.383;SOR=0.603;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,96:233:99:2431,0,3703
chr1	32158304	rs2297675	A	G	10273.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=453;ExcessHet=3.9794;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.175;SOR=0.875;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:227,226:453:99:5322,0,5370
chr1	32158374	rs3818788	T	C	22616.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329e+00;DB;DP=325;ExcessHet=3.0103;FS=0.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=1.28;SOR=0.656;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:173,152:325:99:3665,0,4561
chr1	32159588	rs2275097	A	C	8405.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650e-01;DB;DP=102;ExcessHet=3.0103;FS=4.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.32;ReadPosRankSum=-8.880e-01;SOR=0.478;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,41:102:99:965,0,1602
chr1	32160918	rs6656079	A	G	10709.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=1.781;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2840,284,0
chr1	32163438	rs116293627	G	A	204.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=-8.750e-01;SOR=0.327;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:213,0,509
chr1	32163950	rs2297674	G	C	3111.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486e+00;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=0.153;SOR=0.752;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:698,0,457
chr1	32164206	rs2228550	T	G	4443.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.170e-01;DB;DP=70;ExcessHet=3.9794;FS=7.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=-8.200e-01;SOR=1.181;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,40:70:99:1022,0,733
chr1	32165495	rs2228552	G	T	4733.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=124;ExcessHet=6.9897;FS=1.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=1.54;SOR=0.781;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,48:124:99:1269,0,1791
chr1	32167526	rs1815465	G	C	7087.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=1.875;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2073,192,0
chr1	32193647	rs1127100	T	C	11966.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e-01;DB;DP=150;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.28;ReadPosRankSum=2.77;SOR=0.697;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,91:150:99:2484,0,1588
chr1	32193773	rs188544949	G	A	2324.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.059e+00;DB;DP=238;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-3.940e-01;SOR=0.710;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:134,104:238:99:2333,0,3297
chr1	32194000	rs3831257	C	CAAGA	375.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=22;ExcessHet=3.0103;FS=1.740;MQ=60.00;MQRankSum=0.00;QD=17.06;ReadPosRankSum=-2.970e-01;SOR=0.925;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:384,0,653
chr1	32194404	rs10671499	A	AAC	233.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.59;MQRankSum=-3.190e-01;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=-1.150e+00;SOR=3.056;VQSLOD=0.314;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:81,9,0
chr1	32196647	rs909001	C	G	1292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=89;ExcessHet=3.0103;FS=0.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-2.100e-02;SOR=0.872;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,49:89:99:1301,0,986
chr1	32197257	rs3766823	G	A	70.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=-1.150e+00;SOR=0.446;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:78,0,29
chr1	32203163	rs2271931	C	G	2323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940e-01;DB;DP=172;ExcessHet=3.0103;FS=1.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-7.580e-01;SOR=0.779;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,95:172:99:2332,0,1850
chr1	32203218	rs2271932	C	A	2397.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010e+00;DB;DP=177;ExcessHet=3.0103;FS=5.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=1.49;SOR=0.641;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,100:177:99:2406,0,2083
chr1	32204683	rs2050256	A	G	121.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=-1.718e+00;SOR=1.022;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:130,0,105
chr1	32207581	rs2297600	T	G	3649.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.91;DB;DP=272;ExcessHet=3.0103;FS=5.621;MQ=59.95;MQRankSum=-1.015e+00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=-1.704e+00;SOR=1.003;VQSLOD=2.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:139,133:272:99:3658,0,3511
chr1	32207990	rs12739999	G	A	196.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-5.570e-01;SOR=0.693;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:205,0,254
chr1	32208733	.	T	C	142.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.51;ReadPosRankSum=1.28;SOR=1.981;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:151,0,27
chr1	32221913	rs4949223	G	A	3005.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=234;ExcessHet=3.0103;FS=2.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-1.560e+00;SOR=0.904;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,114:234:99:3014,0,3025
chr1	32256086	rs13426	T	C	792.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=3.9794;FS=8.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.78;ReadPosRankSum=-2.100e-01;SOR=3.521;VQSLOD=13.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:185,0,140
chr1	32266026	rs552124	A	G	13165.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639e+00;DB;DP=163;ExcessHet=3.0103;FS=0.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=1.13;SOR=0.563;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,80:163:99:1924,0,2032
chr1	32280610	rs6664445	T	C	5713.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=142;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-1.317e+00;SOR=0.696;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,70:142:99:1936,0,1783
chr1	32502430	rs3738002	T	A	1752.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=58;ExcessHet=3.9794;FS=0.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=1.54;SOR=0.880;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,34:58:99:1016,0,673
chr1	32542507	rs4317856	C	A	669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.453e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=0.463;SOR=0.223;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:421,0,291
chr1	32552367	.	CA	C	35.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.76;ReadPosRankSum=0.431;SOR=0.223;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:18:44,0,18
chr1	32552850	rs6676851	G	T	138.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=3.258;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
chr1	32557486	rs744455	A	G	5168.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.77;DB;DP=191;ExcessHet=3.9794;FS=3.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.012;SOR=0.893;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,84:191:99:2538,0,2912
chr1	32557673	rs744454	C	T	2633.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=94;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=1.25;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.718;SOR=0.671;VQSLOD=2.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,41:94:99:1012,0,1357
chr1	32623108	rs41311207	A	G	1135.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=49;ExcessHet=3.9794;FS=0.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-5.100e-02;SOR=0.882;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,27:49:99:709,0,594
chr1	32625250	rs41308244	G	C	278.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.702;SOR=0.188;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:164,0,176
chr1	32628299	rs55797802	A	G	350.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.32;MQRankSum=0.00;QD=21.88;ReadPosRankSum=-4.310e-01;SOR=0.693;VQSLOD=-3.287e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:57:256,0,57
chr1	32631609	rs373011179	AC	A	584.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=11;ExcessHet=3.9794;FS=6.435;MQ=60.00;MQRankSum=0.00;QD=17.70;ReadPosRankSum=-4.600e-01;SOR=0.074;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:192,0,427
chr1	32631633	.	AC	A	168.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.02;ReadPosRankSum=1.20;SOR=0.693;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,5:14:99:0|1:32631633_AC_A:177,0,591:32631633
chr1	32631635	.	AAC	A	165.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.72;ReadPosRankSum=1.41;SOR=0.859;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,5:17:99:0|1:32631633_AC_A:174,0,613:32631633
chr1	32646186	rs2273164	C	G	179.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=-1.570e-01;SOR=1.179;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:187,0,107
chr1	32647307	rs72666776	T	G	536.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.425;SOR=0.825;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:175,0,307
chr1	32655957	rs10551696	TTCC	T	2475.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;DB;DP=76;ExcessHet=3.9794;FS=1.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=1.68;SOR=0.503;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,34:76:99:1301,0,1790
chr1	32658062	rs79952364	G	GGT	7188.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=27.12;SOR=1.353;VQSLOD=5.75;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2234,156,0
chr1	32658447	rs16834916	G	A	301.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.840e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=0.381;SOR=0.481;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:99:105,0,425
chr1	32661059	rs16834922	T	C	1162.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DB;DP=43;ExcessHet=3.9794;FS=1.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=1.21;SOR=0.929;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:565,0,441
chr1	32661578	rs112648110	CT	C	47.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.44;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,1:2:19:20,0,19
chr1	32671030	rs2295116	C	T	1002.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=30;ExcessHet=3.9794;FS=12.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=2.35;SOR=2.157;VQSLOD=14.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:617,0,247
chr1	32671065	rs2295117	A	C	715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-2.500e-02;SOR=0.749;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:85:438,0,85
chr1	32672784	rs56663136	G	C	4210.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=102;ExcessHet=3.9794;FS=3.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.573;SOR=0.747;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,51:102:99:0|1:32672784_G_C:1999,0,2994:32672784
chr1	32672785	rs60559680	A	T	4210.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=102;ExcessHet=3.9794;FS=3.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.578;SOR=0.711;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,52:102:99:0|1:32672784_G_C:1999,0,2994:32672784
chr1	32672908	rs3903683	T	G	4093.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=186;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-2.490e-01;SOR=0.675;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,93:186:99:2453,0,2366
chr1	32677212	rs35178513	C	T	206.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.674;SOR=0.790;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:146,0,106
chr1	32680654	rs113853280	G	GA	75.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.78;ReadPosRankSum=0.524;SOR=0.368;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:51:51,0,74
chr1	32682962	rs41311189	C	A	1957.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930e-01;DB;DP=90;ExcessHet=3.9794;FS=10.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=1.01;SOR=1.399;VQSLOD=17.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,39:90:99:950,0,1309
chr1	32686594	rs3738001	A	G	1083.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.96;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=-2.830e-01;SOR=3.407;VQSLOD=19.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:92:396,0,92
chr1	32687777	rs17523023	A	G	353.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-6.090e-01;SOR=0.883;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:175,0,300
chr1	32689521	rs16834931	A	G	1046.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=40;ExcessHet=3.9794;FS=1.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-2.720e-01;SOR=0.542;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:642,0,464
chr1	32689857	rs589034	A	G	2441.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=34;ExcessHet=1.5490;FS=1.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.00;ReadPosRankSum=0.061;SOR=1.033;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,26:34:99:963,0,191
chr1	32691617	rs72666791	G	C	602.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:286,0,224
chr1	32692168	.	ATT	AT,A	772.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.319;DP=22;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=12.66;ReadPosRankSum=-9.040e-01;SOR=0.527;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,13,5:22:44:346,44,59,201,0,303
chr1	32694819	rs72666792	A	G	733.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=41;ExcessHet=3.9794;FS=0.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-3.440e-01;SOR=0.504;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:458,0,521
chr1	32696628	rs72666795	A	C	2870.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=117;ExcessHet=3.9794;FS=1.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-4.420e-01;SOR=0.583;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,50:117:99:1204,0,1455
chr1	32696776	rs115858570	C	T	1414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.030e-01;DB;DP=83;ExcessHet=3.0103;FS=3.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=1.23;SOR=0.390;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,57:83:99:1423,0,562
chr1	32713199	rs2291063	A	G	4596.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=146;ExcessHet=3.9794;FS=1.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=-1.790e-01;SOR=0.580;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,87:146:99:2332,0,1317
chr1	32826985	.	G	T	271.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647e+00;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.95;ReadPosRankSum=0.412;SOR=0.976;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:280,0,222
chr1	32831543	rs476153	C	T	246.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=-1.383e+00;SOR=0.473;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:137,12,0
chr1	32860161	rs547329	T	C	11398.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.15;SOR=3.507;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3137,247,0
chr1	33065947	rs704886	G	C	12463.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=1.361;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3243,299,0
chr1	33087567	.	G	GA	235.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DP=42;ExcessHet=6.9897;FS=2.612;MQ=60.00;MQRankSum=0.00;QD=2.61;ReadPosRankSum=-6.810e-01;SOR=0.757;VQSLOD=5.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,10:42:99:108,0,595
chr1	33117071	rs583114	T	G	6388.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.80;SOR=1.712;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2250,219,0
chr1	33117231	rs664567	G	A	1949.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.179;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:749,57,0
chr1	33127730	rs1085416	T	C	2054.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=1.352;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:641,63,0
chr1	33133968	rs2762904	T	C	7031.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=31.53;SOR=0.963;VQSLOD=5.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2333,222,0
chr1	33134774	rs359955	A	C	5408.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.880e-01;DB;DP=63;ExcessHet=3.0103;FS=3.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=-1.297e+00;SOR=0.979;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1928,187,0
chr1	33134989	rs359956	A	G	3376.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=47;ExcessHet=3.0103;FS=2.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=0.330;SOR=1.114;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1377,139,0
chr1	33137928	rs2762905	A	G	476.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=-1.910e-01;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:223,18,0
chr1	33138516	rs607202	A	C	10617.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=0.784;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3397,314,0
chr1	33138605	rs1320511	T	C	6131.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=69;ExcessHet=3.0103;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=-3.460e-01;SOR=1.031;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2153,207,0
chr1	33138833	rs608543	T	C	1147.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=1.863;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:290,21,0
chr1	33139043	rs201749130	C	T	3375.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=29;ExcessHet=3.0103;FS=2.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.27;ReadPosRankSum=2.26;SOR=0.820;VQSLOD=6.35;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:3,26:29:24:1|1:33139041_C_CTT:624,24,0:33139041
chr1	33139044	rs11373803	T	TC	2222.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=2.33;SOR=0.661;VQSLOD=6.64;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:3,26:29:24:1|1:33139041_C_CTT:624,24,0:33139041
chr1	33147143	rs360510	C	T	1511.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.60;SOR=3.611;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:368,27,0
chr1	33160878	rs360042	C	T	13798.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.28;DB;DP=204;ExcessHet=3.0103;FS=2.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=-1.071e+00;SOR=0.911;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,204:204:99:6166,612,0
chr1	33161212	rs360041	T	C	23734.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.530e-01;DB;DP=335;ExcessHet=3.0103;FS=0.761;MQ=59.98;MQRankSum=-9.190e-01;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=-6.110e-01;SOR=0.648;VQSLOD=2.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,335:335:99:9976,1005,0
chr1	33161806	rs360040	C	T	575.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	33231380	rs6694085	T	G	3687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=141;ExcessHet=6.9897;FS=2.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-1.070e-01;SOR=0.578;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,67:141:99:1668,0,1754
chr1	33231403	rs6702519	G	T	3683.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=138;ExcessHet=6.9897;FS=2.503;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-5.720e-01;SOR=0.634;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,64:138:99:1631,0,1799
chr1	33231694	rs60579048	T	G	100.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,102
chr1	33233223	rs4951771	C	T	962.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.63;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=0.319;SOR=1.230;VQSLOD=5.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:56:219,0,56
chr1	33233237	rs360524	G	A	1200.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=-3.420e-01;SOR=1.402;VQSLOD=5.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:98:288,0,98
chr1	33233323	rs360523	A	G	10429.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=2.777;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2424,216,0
chr1	33234128	rs3737992	G	A	886.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=14;ExcessHet=6.9897;FS=5.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.932;SOR=1.559;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:182,0,164
chr1	33234136	rs360522	T	C	2686.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=2.049;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:699,54,0
chr1	33234153	rs3737993	G	A	999.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DB;DP=24;ExcessHet=6.9897;FS=6.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.176;SOR=0.289;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:239,0,363
chr1	33235626	rs3737995	G	A	5333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=232;ExcessHet=3.9794;FS=1.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=2.37;SOR=0.729;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,115:232:99:3118,0,2993
chr1	33246440	rs2282293	T	C	713.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.910e-01;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-7.540e-01;SOR=0.523;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:184,0,137
chr1	33251739	rs785415	T	C	735.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=3.500;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr1	33252099	rs149745059	TCACATGCATGACTATTCCTAGCC	T	3461.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;DB;DP=50;ExcessHet=6.9897;FS=0.669;MQ=60.00;MQRankSum=0.00;QD=18.61;ReadPosRankSum=-8.900e-01;SOR=0.584;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,18:50:99:636,0,6859
chr1	33256884	rs1765223	C	A	3112.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=92;ExcessHet=6.9897;FS=2.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-3.650e-01;SOR=0.541;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,41:92:99:965,0,1148
chr1	33276424	rs4951787	G	A	8347.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=0.875;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2117,207,0
chr1	33293384	.	GT	G	190.35	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.35;POSITIVE_TRAIN_SITE;QD=32.15;SOR=3.611;VQSLOD=6.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:3:9:105,9,0
chr1	33293386	.	T	*,G	51.72	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.03;NEGATIVE_TRAIN_SITE;QD=10.34;SOR=3.611;VQSLOD=-2.406e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,1,2:3:21:126,59,50,30,0,21
chr1	33293411	.	G	T	37.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.35;MQRankSum=0.524;QD=7.59;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=-8.374e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:44:1|0:33293387_T_G:44,0,95:33293387
chr1	33293748	rs10753266	T	C	1445.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=3.797;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:444,36,0
chr1	33299371	rs57384847	T	G	179.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,70
chr1	33299816	rs4951773	A	T	3120.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.65;SOR=3.202;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:667,54,0
chr1	33318561	rs702836	T	C	3883.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=3.056;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1494,123,0
chr1	33318634	rs785274	G	A	8957.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.68;SOR=1.271;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2889,290,0
chr1	33318868	rs61236897	C	CATTTGAGGTCAGGA	2219.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.80;SOR=4.047;VQSLOD=5.58;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:709,48,0
chr1	33330432	rs1284368	A	G	9470.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=1.813;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3165,279,0
chr1	33402334	rs200262373	GA	G	362.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=17;ExcessHet=6.9897;FS=5.311;MQ=60.00;MQRankSum=0.00;QD=4.53;ReadPosRankSum=0.894;SOR=1.378;VQSLOD=4.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,2:17:5:5,0,281
chr1	33407693	rs194643	G	A	576.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=0.230;SOR=0.641;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:44:44,0,364
chr1	33409551	rs194644	C	T	2483.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=33;ExcessHet=3.9794;FS=5.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=0.775;SOR=1.331;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,17:33:99:0|1:33409551_C_T:441,0,440:33409551
chr1	33409693	rs194645	G	A	4911.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=76;ExcessHet=3.9794;FS=2.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=2.24;SOR=0.869;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,49:76:99:1233,0,553
chr1	33415623	rs194646	T	C	132.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=3.258;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:146,12,0
chr1	33430102	rs113840389	T	G	1352.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.42;SOR=4.407;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:33430102_T_G:556,42,0:33430102
chr1	33430121	rs113914269	G	T	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.640e-01;DB;DP=26;ExcessHet=3.0103;FS=1.974;MQ=60.00;MQRankSum=0.00;QD=14.89;ReadPosRankSum=-1.290e-01;SOR=1.387;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,14:26:99:0|1:33430102_T_G:396,0,329:33430102
chr1	33485789	rs140580245	AACACACAC	A,AACACACACACACAC	978.53	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.76;QD=29.95;SOR=5.058;VQSLOD=5.25;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,1:5:29:210,42,29,168,0,166
chr1	33497070	rs1012884	G	A	2228.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.77;SOR=3.407;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:764,69,0
chr1	33502184	rs11591185	G	A	762.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=66;ExcessHet=3.0103;FS=2.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.08;SOR=0.436;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:771,0,840
chr1	33547768	rs1871322	T	C	966.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=88;ExcessHet=3.0103;FS=3.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.512;SOR=1.191;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,35:88:99:975,0,1378
chr1	33560338	rs804428	A	G	8899.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=1.345;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3317,339,0
chr1	33631069	rs2306257	C	A	288.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147e+00;DB;DP=34;ExcessHet=3.0103;FS=1.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=1.09;SOR=0.350;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:297,0,586
chr1	33641932	rs604941	A	G	8485.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=1.084;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2806,279,0
chr1	33642152	rs643402	C	T	2429.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=27;ExcessHet=3.0103;FS=2.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=-1.011e+00;SOR=1.321;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,8:27:99:213,0,537
chr1	33646950	rs622407	A	G	12450.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=167;ExcessHet=3.0103;FS=0.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=-1.190e-01;SOR=0.662;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,77:167:99:2095,0,2260
chr1	33741615	rs7514338	T	A	2306.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516e+00;DB;DP=81;ExcessHet=3.9794;FS=3.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.931;SOR=0.460;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,39:81:99:1048,0,1185
chr1	33742228	rs4475712	T	C	3183.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.93;QD=34.61;SOR=4.059;VQSLOD=4.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1335,111,0
chr1	33742336	rs12078972	A	G	748.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.59;SOR=2.303;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:33742336_A_G:218,15,0:33742336
chr1	33742353	rs55879775	C	T	636.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.81;SOR=2.448;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:33742336_A_G:177,12,0:33742336
chr1	33746163	rs10914676	T	C	2117.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.66;SOR=4.407;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:33746163_T_C:680,57,0:33746163
chr1	33760743	rs4641276	T	C	13264.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=1.074;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,165:165:99:5058,495,0
chr1	33761014	rs34749979	C	CAAAG	955.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.84;ReadPosRankSum=0.481;SOR=0.968;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:276,0,322
chr1	33777524	rs6679416	T	C	1554.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=48;ExcessHet=3.9794;FS=1.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.098;SOR=0.999;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:849,0,613
chr1	33778226	rs12563102	G	A	1109.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=37;ExcessHet=3.9794;FS=1.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.715;SOR=0.467;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:527,0,494
chr1	33778591	rs6664593	T	C	592.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=1.52;SOR=0.749;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:345,0,303
chr1	33794853	rs7551448	A	G	787.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.09;SOR=6.091;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:275,21,0
chr1	33795572	rs10914684	G	A	830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=1.70;SOR=1.005;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:160,0,326
chr1	33795590	rs10914685	A	T	1423.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.149e+00;DB;DP=19;ExcessHet=3.9794;FS=1.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=1.69;SOR=0.400;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:160,0,439
chr1	33796081	rs4653044	A	C	601.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=0.547;SOR=0.997;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr1	33796834	rs34504596	GA	G	1054.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=1.68;SOR=0.730;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,14:22:99:458,0,205
chr1	33832865	rs6425816	A	G	4381.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DB;DP=174;ExcessHet=3.9794;FS=3.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=1.77;SOR=0.530;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,76:174:99:1911,0,2697
chr1	33834416	rs12144672	T	C	633.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.69;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.478;SOR=0.392;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:245,0,436
chr1	33834455	rs4653111	A	G	302.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.108e+00;DB;DP=9;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-3.100e-01;SOR=1.179;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:132,0,148
chr1	33836796	rs7545416	C	G	1371.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.800e-02;DB;DP=45;ExcessHet=3.9794;FS=1.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-1.440e-01;SOR=1.007;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,20:45:99:522,0,659
chr1	33840795	rs10914693	T	G	1339.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DB;DP=47;ExcessHet=3.9794;FS=2.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=1.13;SOR=0.414;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:594,0,723
chr1	33954352	rs3795418	A	G	954.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=2.925;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:423,30,0
chr1	33954469	rs3838985	AG	A	1027.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=5.283;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:337,27,0
chr1	33957152	rs4403594	T	G	17225.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=0.818;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,160:160:99:5105,479,0
chr1	33960062	rs9943259	A	G	4865.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=1.110;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2271,210,0
chr1	33961147	rs3795420	T	G	2785.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=2.985;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1260,105,0
chr1	33984970	rs2131776	G	T	163.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.200;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:171,0,191
chr1	33985353	rs2641959	C	G	4672.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564e+00;DB;DP=162;ExcessHet=3.9794;FS=0.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.920;SOR=0.640;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,90:162:99:2511,0,1999
chr1	33999174	rs35879676	GT	G	1283.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-01;DB;DP=47;ExcessHet=3.9794;FS=1.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.24;SOR=0.482;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,24:47:99:622,0,589
chr1	33999809	rs923879	G	A	199.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.930e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=1.80;SOR=0.859;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr1	34003368	rs2641954	G	A	514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.637;SOR=0.498;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:216,0,190
chr1	34023217	.	GACACAC	G	1241.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=0.291;SOR=5.486;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:34023217_GACACAC_G:315,21,0:34023217
chr1	34023253	rs2641963	C	T	2035.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.561;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.28;ReadPosRankSum=1.65;SOR=6.518;VQSLOD=12.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:34023217_GACACAC_G:549,39,0:34023217
chr1	34023749	rs915108	T	C	780.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=5.892;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr1	34023779	rs1318411	A	G	501.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.40;ReadPosRankSum=1.15;SOR=3.912;VQSLOD=15.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:108,0,30
chr1	34038006	rs1493992	T	C	230.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=58.89;QD=30.50;SOR=3.912;VQSLOD=3.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:34037991_GTTTT_G:31,3,0:34037991
chr1	34038214	rs2641962	T	C	5134.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994e+00;DB;DP=89;ExcessHet=3.0103;FS=2.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=-7.370e-01;SOR=0.545;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,41:89:99:906,0,1226
chr1	34038413	rs2794602	A	C	2217.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=19;ExcessHet=3.0103;FS=2.327;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.60;ReadPosRankSum=0.613;SOR=0.439;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:343,0,298
chr1	34038464	rs10712226	CT	C	1108.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.75;ReadPosRankSum=1.98;SOR=3.407;VQSLOD=5.00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:34038464_CT_C:192,0,165:34038464
chr1	34038468	rs115973175	T	C	1108.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.84;ReadPosRankSum=1.98;SOR=3.407;VQSLOD=17.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:34038464_CT_C:192,0,165:34038464
chr1	34042810	rs1389560	A	G	446.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DB;DP=54;ExcessHet=3.0103;FS=1.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=1.04;SOR=0.512;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,21:54:99:455,0,726
chr1	34043169	rs11291100	TC	T	4778.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=1.017;VQSLOD=5.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1150,111,0
chr1	34043287	rs1389558	C	A	149.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=23;ExcessHet=3.0103;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=-6.690e-01;SOR=0.330;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,7:23:99:158,0,477
chr1	34046646	rs292808	C	A	405.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-7.230e-01;SOR=0.560;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:279,0,268
chr1	34052305	rs12727575	C	T	1981.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=35;ExcessHet=1.5490;FS=1.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=0.199;SOR=0.436;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:506,0,407
chr1	34052403	rs6425831	A	G	1218.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=9;ExcessHet=3.0103;FS=6.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.83;ReadPosRankSum=1.18;SOR=4.112;VQSLOD=13.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:183,0,133
chr1	34052605	rs7526990	A	G	1743.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.171e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.29;ReadPosRankSum=-5.100e-01;SOR=1.576;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:99:451,0,144
chr1	34070826	rs12733436	G	A	2247.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=5.820;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:839,60,0
chr1	34071434	rs1874044	C	T	3785.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=1.064;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:991,100,0
chr1	34071525	rs1874045	C	T	4729.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=0.948;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1522,144,0
chr1	34079895	.	T	A	509.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349e+00;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.76;ReadPosRankSum=1.31;SOR=0.760;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:518,0,512
chr1	34158472	rs12757315	C	T	7578.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.486e+00;DB;DP=104;ExcessHet=3.9794;FS=15.460;MQ=59.97;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=-1.649e+00;SOR=0.234;VQSLOD=0.171;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,103:104:99:1|1:34158472_C_T:4454,228,0:34158472
chr1	34158482	rs12757320	C	T	7900.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.335e+00;DB;DP=110;ExcessHet=3.9794;FS=15.244;MQ=59.97;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=-1.039e+00;SOR=0.261;VQSLOD=1.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,109:110:99:1|1:34158472_C_T:4635,243,0:34158472
chr1	34164286	rs1887918	A	G	1750.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=25;ExcessHet=3.9794;FS=2.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=2.77;SOR=0.206;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1020,75,0
chr1	34166355	rs1550544	C	G	248.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=-6.080e-01;SOR=1.609;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	34189429	rs544991	C	T	199.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.28;SOR=3.912;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	34189493	rs544820	C	T	439.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=3.611;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
chr1	34189552	rs667892	C	T	1071.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=2.448;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:526,51,0
chr1	34189917	rs519370	C	T	5996.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=1.609;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2019,185,0
chr1	34189957	rs11346874	AG	A	3694.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.21;SOR=2.093;VQSLOD=5.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1066,93,0
chr1	34205134	rs12117137	C	T	308.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=1.22;SOR=0.693;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:54:54,0,232
chr1	34209478	rs501699	C	T	119.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.67;SOR=1.609;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr1	34254108	.	C	CA	822.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.930e-01;DP=22;ExcessHet=3.0103;FS=3.800;MQ=59.50;MQRankSum=-3.930e-01;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-8.300e-02;SOR=1.636;VQSLOD=0.294;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,14:22:76:179,0,76
chr1	34270187	rs12408037	T	C	538.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.31;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.93;ReadPosRankSum=-2.530e-01;SOR=2.833;VQSLOD=3.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:231,21,0
chr1	34270498	rs10737374	G	A	9414.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.058;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=-1.450e-01;SOR=0.661;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3802,372,0
chr1	34276210	rs11418676	T	TA	739.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.910e-01;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=0.274;SOR=3.912;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:281,30,0
chr1	34285342	rs17342512	G	A	4230.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.378;DB;DP=64;ExcessHet=3.9794;FS=0.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=-9.710e-01;SOR=0.773;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2097,192,0
chr1	34285381	rs11578857	C	T	5757.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.751e+00;DB;DP=105;ExcessHet=3.9794;FS=1.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=1.74;SOR=0.588;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3179,313,0
chr1	34285716	rs10914784	G	A	807.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.30;DB;DP=5;ExcessHet=3.9794;FS=7.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.113;SOR=2.891;VQSLOD=17.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	34285995	rs3795414	G	A	1153.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.505e+00;DB;DP=19;ExcessHet=3.9794;FS=2.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=-5.720e-01;SOR=0.399;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:34285993_A_T:615,57,0:34285993
chr1	34286166	.	CAAAA	C,CAAA	790.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.00;DP=21;ExcessHet=3.9794;FS=5.327;MQ=59.49;MQRankSum=0.00;QD=24.69;ReadPosRankSum=1.24;SOR=0.836;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,8:21:99:610,316,355,173,0,125
chr1	34286189	rs3843294	A	C	1506.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=26;ExcessHet=3.0103;FS=2.000;MQ=59.33;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=0.534;SOR=0.352;VQSLOD=-1.064e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,25:26:67:955,67,0
chr1	34291094	rs10914785	A	C	318.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=3.056;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	34312179	rs746667	C	G	278.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.86;ReadPosRankSum=1.15;SOR=1.402;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr1	34329897	rs911218	T	C	4680.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.569;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=-2.280e-01;SOR=0.786;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1720,159,0
chr1	34330067	rs10379	A	C	13090.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.77;DB;DP=154;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.09;ReadPosRankSum=-1.240e-01;SOR=0.669;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:5214,462,0
chr1	34330533	.	AGAGGAGG	A	120.03	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.77;SOR=1.179;VQSLOD=3.50;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:34330533_AGAGGAGG_A:135,9,0:34330533
chr1	34330553	rs201894154	A	G	77.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.87;SOR=0.693;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:34330533_AGAGGAGG_A:90,6,0:34330533
chr1	34330558	.	G	A	72.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.19;ReadPosRankSum=0.431;SOR=0.223;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:24:0|1:34330533_AGAGGAGG_A:81,0,24:34330533
chr1	34631101	rs297789	C	T	838.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.47;SOR=3.160;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:439,33,0
chr1	34684463	rs705207	G	A	2484.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DB;DP=29;ExcessHet=3.0103;FS=0.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=0.00;SOR=0.563;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:933,87,0
chr1	34684571	rs3831264	CACACAT	C	587.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.534e+00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.39;ReadPosRankSum=-1.570e-01;SOR=2.093;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	34684621	rs1061074	A	G	365.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.09;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr1	35135315	rs2147385	C	T	256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=1.87;SOR=1.022;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:85:265,0,85
chr1	35183678	rs684136	A	C	148.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.32;SOR=3.258;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr1	35183838	rs683589	A	C	1833.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.855e+00;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.21;ReadPosRankSum=-4.560e-01;SOR=0.725;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1407,126,0
chr1	35184033	rs693582	C	T	2899.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=73;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=0.949;SOR=0.759;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,72:73:99:2295,181,0
chr1	35184084	rs693852	C	T	1816.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.550e+00;DB;DP=43;ExcessHet=1.5490;FS=2.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=-6.880e-01;SOR=1.167;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1398,128,0
chr1	35184170	rs67288611	G	GT	448.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=0.108;SOR=0.481;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:35184170_G_GT:315,21,0:35184170
chr1	35184172	rs1024219	A	T	448.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.40;ReadPosRankSum=0.108;SOR=0.481;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:35184170_G_GT:315,21,0:35184170
chr1	35184241	rs681767	C	T	154.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.981;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr1	35223345	rs3738345	G	A	6658.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.129;DB;DP=128;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=-3.920e-01;SOR=0.679;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4464,384,0
chr1	35223881	rs1061349	G	A	1118.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.565e+00;DB;DP=19;ExcessHet=1.5490;FS=4.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=-7.130e-01;SOR=2.038;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:691,57,0
chr1	35251161	rs35983826	C	T	1470.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.761e+00;DB;DP=119;ExcessHet=3.0103;FS=1.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.835;SOR=0.914;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,62:119:99:1479,0,1562
chr1	35251229	rs476220	G	A	1438.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=52;ExcessHet=3.9794;FS=0.881;MQ=59.88;MQRankSum=0.812;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=1.08;SOR=0.838;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,25:52:99:698,0,785
chr1	35259961	rs1764390	A	G	21927.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.15;DB;DP=295;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=-1.261e+00;SOR=0.651;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,295:295:99:9144,885,0
chr1	35260769	rs1764391	C	T	4978.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.878e+00;DB;DP=176;ExcessHet=3.9794;FS=13.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.597;SOR=0.283;VQSLOD=15.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,98:176:99:2720,0,2361
chr1	35260929	rs3543	G	A	2531.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.910e-01;DB;DP=26;ExcessHet=3.0103;FS=1.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.14;ReadPosRankSum=-2.083e+00;SOR=1.225;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:964,78,0
chr1	35261044	rs3841825	CAG	C	245.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.39;ReadPosRankSum=-9.670e-01;SOR=2.584;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:37:81,0,37
chr1	35321684	rs11383879	A	AT	616.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.34;ReadPosRankSum=0.175;SOR=0.466;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,17:24:87:302,0,87
chr1	35332926	rs1001616	G	C	2307.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277e+00;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.93;ReadPosRankSum=1.66;SOR=0.719;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:630,0,534
chr1	35350573	rs34565935	CT	C	867.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=65;ExcessHet=3.0103;FS=0.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.309;SOR=0.780;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,30:65:99:876,0,1049
chr1	35561510	rs2101973	G	A	4572.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.500e-01;DB;DP=80;ExcessHet=3.9794;FS=3.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=1.28;SOR=0.522;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2320,240,0
chr1	35562965	rs2971408	G	A	5481.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.77;DB;DP=86;ExcessHet=3.9794;FS=4.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=0.967;SOR=0.989;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2564,256,0
chr1	35563206	rs6658571	C	G	2444.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-1.420e-01;SOR=0.632;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,37:39:29:1159,29,0
chr1	35576145	rs2935955	C	T	500.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=2.11;SOR=1.179;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	35734505	.	C	T	92.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.38;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,106
chr1	35836328	rs3066096	C	CT	253.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.85;QD=14.10;SOR=4.407;VQSLOD=0.669;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:39,6,0
chr1	35925861	rs2819002	C	A	5341.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=30.70;SOR=1.775;VQSLOD=5.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,56:58:99:1875,173,0
chr1	36101730	rs523743	T	C	2265.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=8.051;VQSLOD=23.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:622,45,0
chr1	36107250	rs567476	G	C	1358.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.53;SOR=7.276;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:234,21,0
chr1	36203715	.	AT	A	238.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.637;DP=6;ExcessHet=3.0103;FS=0.000;MQ=58.43;MQRankSum=-3.660e-01;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.00;SOR=1.473;VQSLOD=1.47;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:17:1|1:36203715_AT_A:166,17,0:36203715
chr1	36203718	rs2336141	T	A	151.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=58.04;NEGATIVE_TRAIN_SITE;QD=11.66;SOR=1.473;VQSLOD=-1.645e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:17:1|1:36203715_AT_A:166,17,0:36203715
chr1	36205166	rs577483	A	G	3992.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=52;ExcessHet=3.9794;FS=12.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.96;ReadPosRankSum=0.276;SOR=1.664;VQSLOD=16.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1773,156,0
chr1	36213712	rs516992	G	T	2982.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=2.891;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:733,57,0
chr1	36214421	rs201350754	CTT	C	548.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.310e-01;DB;DP=14;ExcessHet=3.9794;FS=6.525;MQ=59.11;MQRankSum=-3.650e-01;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=0.257;SOR=2.649;VQSLOD=0.464;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,3:14:99:104,0,127
chr1	36216835	rs535638	C	T	1407.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=20;ExcessHet=3.9794;FS=4.841;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=0.319;SOR=0.128;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:634,60,0
chr1	36282399	rs72065876	CA	C	607.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=19;ExcessHet=6.9897;FS=3.460;MQ=59.38;MQRankSum=0.00;QD=11.05;ReadPosRankSum=0.692;SOR=1.362;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,6:19:95:0|1:36282399_CA_C:95,0,230:36282399
chr1	36282417	rs2791960	A	G	2133.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.777;DB;DP=30;ExcessHet=3.9794;FS=2.820;MQ=59.46;MQRankSum=0.00;QD=20.32;ReadPosRankSum=0.352;SOR=1.267;VQSLOD=0.657;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,29:30:79:1|1:36282399_CA_C:1025,79,0:36282399
chr1	36307412	.	CAT	C	1105.41	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.54;ReadPosRankSum=-2.750e-01;SOR=1.981;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:135,12,0
chr1	36316304	rs4233204	G	C	352.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=4.615;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr1	36316418	rs11403763	C	CA	3263.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.530e-01;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=59.62;MQRankSum=-1.210e-01;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=-1.351e+00;SOR=1.418;VQSLOD=1.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,35:36:80:950,80,0
chr1	36316571	rs4652895	A	C	6996.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.100e-01;DB;DP=111;ExcessHet=3.9794;FS=1.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=0.112;SOR=0.754;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3228,331,0
chr1	36372409	.	GA	G	319.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=23;ExcessHet=6.9897;FS=4.050;MQ=60.00;MQRankSum=0.00;QD=4.91;ReadPosRankSum=-1.840e-01;SOR=1.705;VQSLOD=4.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,3:23:5:5,0,357
chr1	36501633	.	CAAA	CA,C	505.36	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.489;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.61;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=-1.570e-01;SOR=2.621;VQSLOD=6.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,3,4:8:32:182,41,47,32,0,74
chr1	36520391	rs385621	T	G	745.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.79;SOR=6.091;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
chr1	36553673	rs399393	A	G	8561.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.500e-01;DB;DP=102;ExcessHet=3.0103;FS=1.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=-3.700e-01;SOR=0.813;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3297,305,0
chr1	36554442	rs11263852	G	C	2160.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.39;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1013,75,0
chr1	36563158	rs3738360	C	A	3506.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.188e+00;DB;DP=66;ExcessHet=3.9794;FS=2.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=2.22;SOR=0.531;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1999,196,0
chr1	36565175	rs66899567	G	A	208.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065e+00;DB;DP=12;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-6.540e-01;SOR=0.086;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:217,0,132
chr1	36565584	rs274753	C	G	3978.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=45;ExcessHet=3.0103;FS=1.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.69;ReadPosRankSum=-1.406e+00;SOR=0.563;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,20:45:99:586,0,766
chr1	36565617	rs274754	G	A	3045.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=75;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.054;SOR=0.703;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,31:75:99:878,0,1079
chr1	36565999	rs4652900	A	G	1388.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=24;ExcessHet=6.9897;FS=2.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=0.278;SOR=0.301;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:251,0,509
chr1	36602943	rs2231318	C	T	3322.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=-6.180e-01;SOR=0.820;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,21:33:99:521,0,277
chr1	36603290	rs2231317	C	T	743.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=6.9897;FS=3.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-7.120e-01;SOR=1.402;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:113,0,109
chr1	36614664	rs58710983	GT	G	1914.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.70;MQRankSum=-7.830e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=-3.560e-01;SOR=3.611;VQSLOD=0.505;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:318,0,244
chr1	36614713	rs10752586	C	G	5202.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.35;ReadPosRankSum=0.733;SOR=3.690;VQSLOD=16.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:859,0,683
chr1	36641729	rs2296263	C	T	1479.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164e+00;DB;DP=41;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-4.940e-01;SOR=0.688;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,29:41:99:677,0,278
chr1	36642420	rs475591	T	C	2328.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649e+00;DB;DP=47;ExcessHet=3.0103;FS=4.991;MQ=60.00;MQRankSum=0.00;QD=22.18;ReadPosRankSum=1.46;SOR=0.292;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:510,0,682
chr1	36642991	rs6686192	C	T	420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=-4.800e-01;SOR=0.560;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:186,0,102
chr1	36645811	rs41267273	T	G	615.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324e+00;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.528;SOR=0.693;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:624,0,693
chr1	36747997	.	AT	A	381.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=15;ExcessHet=6.9897;FS=1.884;MQ=60.00;MQRankSum=0.00;QD=11.23;ReadPosRankSum=-5.500e-01;SOR=1.287;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,9:15:37:197,0,37
chr1	36752152	rs2242428	C	T	2140.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=169;ExcessHet=3.0103;FS=3.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-1.371e+00;SOR=0.467;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,85:169:99:2149,0,2124
chr1	36752433	rs6425977	C	T	7946.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=0.4576;FS=0.000;MQ=59.72;POSITIVE_TRAIN_SITE;QD=33.82;SOR=0.772;VQSLOD=4.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4110,369,0
chr1	36754467	rs6425978	G	C	3062.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=35;ExcessHet=3.0103;FS=2.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=-3.380e-01;SOR=1.316;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1314,104,0
chr1	36754522	rs6425979	C	A	5117.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.376e+00;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=1.15;SOR=0.697;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2196,213,0
chr1	36758652	rs3007205	T	C	147.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=57.64;QD=29.52;SOR=3.611;VQSLOD=4.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	36758689	rs3007204	A	G	172.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=57.64;POSITIVE_TRAIN_SITE;QD=34.42;SOR=3.611;VQSLOD=3.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0
chr1	36762396	rs1566589	C	T	2695.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.819e+00;DB;DP=36;ExcessHet=3.0103;FS=2.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=-2.310e-01;SOR=0.987;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1079,108,0
chr1	36766975	rs10908293	G	C	1462.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.05;SOR=0.968;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:609,51,0
chr1	36767400	rs882799	C	T	2102.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=1.839;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1171,108,0
chr1	36773405	rs35343437	T	G	6138.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.650e-01;DB;DP=158;ExcessHet=1.5490;FS=0.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=0.354;SOR=0.645;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,73:158:99:1886,0,2301
chr1	36773819	rs11263871	C	G	11647.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.86;DB;DP=159;ExcessHet=3.0103;FS=3.385;MQ=59.98;MQRankSum=0.917;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=-6.550e-01;SOR=0.691;VQSLOD=2.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4765,475,0
chr1	36775363	rs34502139	TTG	T	352.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=0.298;SOR=1.473;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,168
chr1	36785270	rs2282431	C	T	5113.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=123;ExcessHet=1.5490;FS=3.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=-1.369e+00;SOR=0.912;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,56:123:99:1469,0,1768
chr1	36787888	rs58971913	G	A	970.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740e-01;DB;DP=79;ExcessHet=3.0103;FS=2.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-1.770e-01;SOR=0.465;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,41:79:99:979,0,971
chr1	36788356	rs7536394	A	G	3016.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=-1.156e+00;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=-2.790e-01;SOR=0.646;VQSLOD=2.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,27:27:81:982,81,0
chr1	36807481	rs3795498	C	T	1403.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352e+00;DB;DP=142;ExcessHet=3.0103;FS=5.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-1.410e-01;SOR=1.127;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,65:142:99:1412,0,1949
chr1	36810011	rs4653181	G	A	325.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=8;ExcessHet=3.9794;FS=10.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=0.281;SOR=3.877;VQSLOD=11.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:174,0,99
chr1	36883946	rs16822888	T	C	4276.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888e+00;DB;DP=111;ExcessHet=1.5490;FS=5.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=-1.238e+00;SOR=1.114;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,52:111:99:1262,0,1564
chr1	36884473	rs57413616	A	G	1679.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.79;DB;DP=25;ExcessHet=1.5490;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=-1.198e+00;SOR=2.494;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:493,0,338
chr1	36884527	.	C	CA	238.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DP=50;ExcessHet=3.0103;FS=1.366;MQ=60.00;MQRankSum=0.00;QD=4.77;ReadPosRankSum=1.61;SOR=0.922;VQSLOD=5.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,18:50:99:247,0,1128
chr1	36884530	.	G	A	1155.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e+00;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.33;ReadPosRankSum=-1.900e-02;SOR=0.910;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,30:53:99:961,0,687
chr1	36886117	rs2275477	C	T	604.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293e+00;DB;DP=62;ExcessHet=3.0103;FS=3.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.623;SOR=0.362;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,28:62:99:613,0,888
chr1	36886364	rs2275478	C	G	1376.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.413;SOR=0.960;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:220,0,227
chr1	36887702	rs2236565	C	T	3058.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-3.510e-01;SOR=0.628;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:316,0,470
chr1	36888302	.	CT	C	1291.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.980e-01;DP=41;ExcessHet=3.9794;FS=5.407;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-1.277e+00;SOR=1.278;VQSLOD=6.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,7:41:85:85,0,722
chr1	36889197	rs11263892	T	C	1063.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.55;ReadPosRankSum=0.735;SOR=1.230;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:306,0,161
chr1	36898067	rs34409118	T	C	746.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DB;DP=43;ExcessHet=3.0103;FS=1.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=-1.120e+00;SOR=0.368;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,26:43:99:755,0,457
chr1	36898332	rs61772386	C	T	379.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=1.32;SOR=0.976;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:388,0,499
chr1	36904760	rs4652914	G	A	162.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900e-01;DB;DP=10;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-7.000e-01;SOR=3.056;VQSLOD=18.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:171,0,146
chr1	36921371	rs1538634	G	T	1701.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.811e+00;DB;DP=89;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=1.57;SOR=0.657;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,40:89:99:939,0,1392
chr1	36926445	rs3738839	C	T	1083.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.630e-01;DB;DP=74;ExcessHet=3.9794;FS=2.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.33;ReadPosRankSum=2.62;SOR=0.936;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,29:74:99:622,0,1130
chr1	36927530	rs78245381	A	C	180.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=0.431;SOR=0.892;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	36927733	rs7065	G	A	4727.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.226;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1255,125,0
chr1	36929673	rs2275473	C	T	2505.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=209;ExcessHet=3.0103;FS=8.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=1.12;SOR=1.214;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,97:209:99:2514,0,2992
chr1	36937059	rs3917981	A	G	3258.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=120;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=1.40;SOR=0.682;VQSLOD=6.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:61,59:120:99:1396,0,1563
chr1	36937878	rs3918018	C	T	1890.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DB;DP=158;ExcessHet=3.0103;FS=2.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.259;SOR=0.537;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,75:158:99:1899,0,2150
chr1	37282884	rs3012032	C	T	3676.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250e-01;DB;DP=144;ExcessHet=3.9794;FS=3.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=1.77;SOR=0.532;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,63:144:99:1490,0,2116
chr1	37283079	rs2993079	T	G	991.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=18;ExcessHet=3.9794;FS=7.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=1.98;SOR=0.097;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,11:18:99:0|1:37283079_T_G:441,0,517:37283079
chr1	37283083	rs55917220	C	T	973.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=18;ExcessHet=3.9794;FS=9.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=1.08;SOR=0.047;VQSLOD=19.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,11:18:99:0|1:37283079_T_G:441,0,517:37283079
chr1	37285123	rs476227	C	A	420.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.380e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=0.811;SOR=1.501;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:194,0,257
chr1	37285555	rs61769768	C	T	1149.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=30;ExcessHet=3.9794;FS=1.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=-1.460e-01;SOR=1.140;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:527,0,431
chr1	37307281	rs553882	T	G	1516.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=67;ExcessHet=3.9794;FS=2.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.302;SOR=0.932;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,26:67:99:752,0,1161
chr1	37307685	rs72668174	G	A	199.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.580e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.542;SOR=0.693;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:37307685_G_A:147,0,354:37307685
chr1	37307686	rs72668175	A	C	199.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.96;ReadPosRankSum=0.542;SOR=0.693;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:37307685_G_A:147,0,354:37307685
chr1	37316233	rs494070	G	A	519.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=9;ExcessHet=3.9794;FS=3.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=1.47;SOR=2.133;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:186,0,138
chr1	37335458	rs577094	A	G	8182.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=128;ExcessHet=3.0103;FS=4.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.50;ReadPosRankSum=0.307;SOR=1.011;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,57:128:99:1492,0,1742
chr1	37335485	rs509284	A	G	6985.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=76;ExcessHet=3.0103;FS=0.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=1.96;SOR=0.914;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,35:76:99:0|1:37335485_A_G:1272,0,1667:37335485
chr1	37335494	rs577813	G	T	6190.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.828e+00;DB;DP=65;ExcessHet=3.0103;FS=1.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.07;ReadPosRankSum=0.528;SOR=1.160;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,29:65:99:0|1:37335485_A_G:1103,0,1609:37335485
chr1	37335551	rs3738085	G	A	2249.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=1.03;SOR=2.010;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:138,0,242
chr1	37626981	rs215756	T	C	1451.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=4.977;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:880,66,0
chr1	37948212	rs215205	C	G	2615.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.092e+00;DB;DP=201;ExcessHet=3.0103;FS=3.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.35;SOR=0.494;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,102:201:99:2624,0,2697
chr1	37959441	rs182535367	G	C	1660.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192e+00;DB;DP=106;ExcessHet=3.0103;FS=4.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=-1.183e+00;SOR=0.376;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,46:106:99:0|1:37959441_G_C:1669,0,3062:37959441
chr1	37959450	rs215210	T	C	5040.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438e+00;DB;DP=102;ExcessHet=3.9794;FS=1.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=-9.430e-01;SOR=0.595;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,44:102:99:0|1:37959441_G_C:1628,0,3046:37959441
chr1	37959470	rs215211	C	G	4173.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.600e-01;DB;DP=93;ExcessHet=3.9794;FS=2.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=0.243;SOR=0.546;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,38:93:99:910,0,1410
chr1	37961285	.	C	CA	304.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DP=16;ExcessHet=3.9794;FS=0.000;MQ=58.48;MQRankSum=1.11;QD=10.14;ReadPosRankSum=0.736;SOR=0.556;VQSLOD=0.507;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,4:16:99:210,0,540
chr1	37961298	rs2783732	C	A	777.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=26;ExcessHet=3.9794;FS=2.176;MQ=58.82;MQRankSum=0.756;QD=9.85;ReadPosRankSum=-1.057e+00;SOR=0.413;VQSLOD=-1.115e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,10:26:99:0|1:37961298_C_A:358,0,614:37961298
chr1	37967707	rs145062262	ATTGACAGAGAAGATACATG	A	1185.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.38;ReadPosRankSum=0.571;SOR=0.520;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:187,0,493
chr1	37967774	rs215864	C	A	1021.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=0.317;SOR=1.302;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:161,0,107
chr1	37975279	rs215214	C	T	3139.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=42;ExcessHet=3.0103;FS=6.109;MQ=59.83;MQRankSum=1.26;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=-8.460e-01;SOR=1.630;VQSLOD=0.385;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,25:42:99:688,0,391
chr1	37975312	rs2036637	T	C	2469.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.01;DB;DP=32;ExcessHet=3.9794;FS=3.799;MQ=59.80;MQRankSum=1.20;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=1.01;SOR=1.379;VQSLOD=0.359;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,18:32:99:560,0,357
chr1	37980446	rs215873	A	C	1737.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.141e+00;DB;DP=43;ExcessHet=3.9794;FS=5.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.440;SOR=0.196;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:699,0,754
chr1	38006359	rs2174769	A	G	8453.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.690e-01;DB;DP=100;ExcessHet=3.0103;FS=0.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-1.297e+00;SOR=0.781;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,51:100:99:1215,0,1289
chr1	38022452	rs2273014	C	A	1728.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288e+00;DB;DP=18;ExcessHet=3.9794;FS=1.243;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=0.132;SOR=1.015;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:314,0,293
chr1	38027052	rs139337139	G	A	118.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.179;SOR=0.330;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,227
chr1	38030696	rs6619	T	C	2597.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=0.123;SOR=0.671;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:353,0,525
chr1	38033047	rs2076519	T	G	554.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=0.842;SOR=0.330;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,144
chr1	38034307	rs3896133	G	A	296.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.63;ReadPosRankSum=1.04;SOR=0.473;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:106,0,62
chr1	38040584	rs111712310	G	C	189.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=0.601;SOR=0.446;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:198,0,101
chr1	38046920	rs2360010	G	T	4673.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.819e+00;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=-2.070e-01;SOR=0.669;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:748,0,840
chr1	38049373	rs3753372	C	T	2892.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e-01;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-1.840e-01;SOR=0.638;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:446,0,581
chr1	38049552	rs6426024	C	G	4563.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=58;ExcessHet=3.0103;FS=3.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=2.01;SOR=1.122;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:712,0,733
chr1	38052867	rs11420067	C	CA	2071.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.640e-01;DB;DP=35;ExcessHet=3.9794;FS=0.863;MQ=60.00;MQRankSum=0.00;QD=14.80;ReadPosRankSum=-1.045e+00;SOR=0.870;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,17:35:99:384,0,344
chr1	38058993	rs4652962	A	G	201.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=0.674;SOR=1.863;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,70
chr1	38061572	rs6697632	G	T	2221.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=-5.680e-01;SOR=0.481;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:204,0,327
chr1	38078300	rs4652964	A	G	4264.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.92;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=0.480;SOR=0.685;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,29:43:99:1065,0,304
chr1	38148765	rs684260	A	G	2745.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.18;DB;DP=25;ExcessHet=3.0103;FS=0.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=-4.900e-02;SOR=0.519;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:943,75,0
chr1	38155699	rs4653319	T	G	376.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331e+00;DB;DP=9;ExcessHet=3.9794;FS=2.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.80;ReadPosRankSum=0.105;SOR=0.191;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:164,0,144
chr1	38155841	rs681191	A	T	500.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=11;ExcessHet=3.9794;FS=2.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=1.16;SOR=2.303;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:87:302,0,87
chr1	38158211	rs2306625	C	T	54.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,70
chr1	38161694	rs615530	A	G	1158.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.060e-01;DB;DP=50;ExcessHet=3.9794;FS=0.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.620;SOR=0.586;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:593,0,681
chr1	38164438	rs3842536	GC	G	305.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=1.65;SOR=0.275;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:66:106,0,66
chr1	38164724	rs557290	C	G	1811.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=71;ExcessHet=3.9794;FS=14.326;MQ=59.94;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.89;SOR=1.791;VQSLOD=0.376;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,31:71:99:801,0,982
chr1	38166022	rs513826	T	C	1020.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.590e-01;DB;DP=51;ExcessHet=3.9794;FS=1.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=1.09;SOR=0.484;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,15:51:99:294,0,1003
chr1	38166327	rs661460	A	T	915.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454e+00;DB;DP=28;ExcessHet=3.9794;FS=0.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-1.200e-01;SOR=0.486;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:224,0,542
chr1	38167345	rs71701232	T	TA	111.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.717;QD=2.78;ReadPosRankSum=0.881;SOR=0.719;VQSLOD=0.313;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:60:60,0,270
chr1	38171370	rs776050	G	A	290.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=0.319;SOR=1.445;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:185,0,102
chr1	38173983	rs145033890	TTTC	T	2761.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=71;ExcessHet=3.9794;FS=4.101;MQ=60.00;MQRankSum=0.00;QD=20.30;ReadPosRankSum=0.446;SOR=1.077;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,38:71:99:1482,0,1427
chr1	38174185	rs557897	G	T	1023.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DB;DP=30;ExcessHet=3.9794;FS=1.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-9.760e-01;SOR=0.502;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:377,0,424
chr1	38181503	rs7512242	C	T	372.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=12;ExcessHet=6.9897;FS=2.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-1.186e+00;SOR=1.355;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,2:12:44:44,0,330
chr1	38184881	rs7533921	A	C	251.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=0.524;SOR=0.859;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:79,0,72
chr1	38188574	rs72659469	G	A	1069.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001e+00;DB;DP=97;ExcessHet=3.0103;FS=1.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-5.620e-01;SOR=0.876;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,44:97:99:1078,0,1403
chr1	38219761	rs681890	C	T	197.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=1.83;SOR=0.551;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:62:62,0,156
chr1	38220109	rs11584465	G	T	1764.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DB;DP=67;ExcessHet=3.9794;FS=1.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.151;SOR=0.863;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,47:67:99:1183,0,420
chr1	38226964	rs55695553	C	T	1913.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072e+00;DB;DP=46;ExcessHet=6.9897;FS=0.723;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-5.810e-01;SOR=0.603;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,13:46:99:282,0,1045
chr1	38227086	rs4653328	A	T	3651.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=170;ExcessHet=3.9794;FS=4.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=1.02;SOR=0.506;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,68:170:99:1737,0,2443
chr1	38228797	rs499168	A	T	494.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.99;ReadPosRankSum=0.674;SOR=3.126;VQSLOD=19.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:116,0,29
chr1	38260503	rs2306627	C	T	1965.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.637e+00;DB;DP=69;ExcessHet=3.9794;FS=5.161;MQ=59.92;MQRankSum=1.07;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-3.150e-01;SOR=0.358;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,24:69:99:614,0,1459
chr1	38289113	rs35582059	CA	C	410.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.68;SOR=5.670;VQSLOD=6.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
chr1	38292296	.	CT	C	140.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.50;ReadPosRankSum=2.10;SOR=0.534;VQSLOD=4.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,5:28:49:49,0,517
chr1	38293992	rs9329568	C	T	3548.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.535e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.41;MQRankSum=-2.070e-01;POSITIVE_TRAIN_SITE;QD=33.48;ReadPosRankSum=0.306;SOR=1.384;VQSLOD=3.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,33:34:58:1027,58,0
chr1	38294110	rs9286096	A	G	618.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=5.549;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	38301220	rs28378413	G	A	482.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.170e-01;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=1.46;SOR=0.852;VQSLOD=4.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:319,0,493
chr1	38301250	rs3912368	A	G	1364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-2.700e-01;SOR=0.617;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:271,0,714
chr1	38301476	rs3762359	G	A	1552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DB;DP=31;ExcessHet=6.9897;FS=6.777;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=-2.710e-01;SOR=0.235;VQSLOD=6.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:412,0,454
chr1	38304469	rs71053996	C	CTTTTT	234.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.75;MQRankSum=0.00;QD=21.31;ReadPosRankSum=-4.310e-01;SOR=1.802;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:7:89:158,0,89
chr1	38327935	rs140670679	CAG	C	964.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DB;DP=29;ExcessHet=3.9794;FS=1.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.486;SOR=0.487;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,13:29:99:489,0,675
chr1	38327982	rs3843	G	T	1868.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019e+00;DB;DP=49;ExcessHet=6.9897;FS=2.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-7.700e-01;SOR=0.539;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,24:49:99:619,0,639
chr1	38332057	.	TTC	T	1128.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DP=29;ExcessHet=3.9794;FS=2.292;MQ=59.93;MQRankSum=1.76;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.29;SOR=0.375;VQSLOD=1.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,15:29:99:416,0,446
chr1	38332078	.	T	A,TCACACACACACACACACA	2016.24	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.09;DP=30;ExcessHet=3.0103;FS=6.404;MQ=59.44;MQRankSum=0.00;QD=14.94;ReadPosRankSum=2.99;SOR=1.467;VQSLOD=3.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:4,17,9:30:99:1233,351,357,627,0,990
chr1	38333984	.	CA	C	72.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DP=12;ExcessHet=3.9794;FS=2.114;MQ=60.00;MQRankSum=0.00;QD=3.61;ReadPosRankSum=-4.760e-01;SOR=1.329;VQSLOD=5.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:26:26,0,126
chr1	38334317	rs2306425	T	A	1205.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=30;ExcessHet=3.9794;FS=5.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=1.17;SOR=1.454;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,14:30:99:0|1:38334317_T_A:540,0,735:38334317
chr1	38334318	rs56217551	C	A	1205.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=30;ExcessHet=3.9794;FS=7.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=1.19;SOR=1.574;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,14:30:99:0|1:38334317_T_A:540,0,735:38334317
chr1	38338795	rs11488569	A	G	3300.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.980e-01;DB;DP=76;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-6.350e-01;SOR=0.715;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,40:76:99:967,0,865
chr1	38341518	rs12752414	G	A	1596.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.05;SOR=5.186;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:535,42,0
chr1	38345896	rs2306427	A	C	680.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=12;ExcessHet=6.9897;FS=1.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=-3.250e-01;SOR=1.123;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:139,0,196
chr1	38352849	rs2279261	G	C	1461.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=1.29;SOR=0.701;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:395,0,242
chr1	38353534	rs59009767	TA	T	40.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.44;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:18:47,0,18
chr1	38356870	rs34349547	G	C	67.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.842;SOR=0.223;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:74:75,0,74
chr1	38356899	rs68031410	C	CA	257.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=6.9897;FS=1.882;MQ=60.00;MQRankSum=0.00;QD=9.52;ReadPosRankSum=0.233;SOR=1.460;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:10:83,0,10
chr1	38397341	rs34655914	G	A	5864.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=220;ExcessHet=3.9794;FS=3.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=-1.500e-02;SOR=0.907;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,108:220:99:2758,0,3035
chr1	38397369	rs35267671	C	T	7752.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=265;ExcessHet=3.9794;FS=1.768;MQ=60.00;MQRankSum=0.00;QD=12.15;ReadPosRankSum=0.219;SOR=0.855;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,132:265:99:3395,0,3632
chr1	38409103	rs28380108	G	C	148.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=1.5490;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=-1.036e+00;SOR=0.636;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:73:79,0,73
chr1	38411350	rs11485595	C	T	2800.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=104;ExcessHet=3.9794;FS=3.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.193;SOR=0.997;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,54:104:99:1546,0,1424
chr1	38411445	rs871524	G	A	2946.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=278;ExcessHet=3.0103;FS=2.001;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=0.833;SOR=0.569;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,134:278:99:2955,0,3154
chr1	38423853	rs9293	G	C	1641.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=3.467;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:567,48,0
chr1	38425629	.	CAA	C,CA	1522.52	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.067e+00;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=0.00;QD=23.07;ReadPosRankSum=-1.042e+00;SOR=1.802;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,11,7:27:99:549,126,100,300,0,233
chr1	38425724	rs17531342	T	C	10554.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=1.070;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2772,262,0
chr1	38425895	rs28675056	T	C	5897.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=1.742;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1475,141,0
chr1	38442547	rs10890216	G	A	8131.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=0.913;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2398,210,0
chr1	38444333	rs6660034	A	G	500.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.54;SOR=5.136;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	38444749	rs7555461	T	C	1135.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237e+00;DB;DP=33;ExcessHet=1.5490;FS=1.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=1.29;SOR=0.454;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:248,0,511
chr1	38447615	rs7533079	G	T	1850.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.61;SOR=3.442;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:398,33,0
chr1	38447725	rs7519947	T	C	136.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.04;SOR=3.258;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr1	38449910	rs11210870	T	C	1720.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733e+00;DB;DP=46;ExcessHet=3.9794;FS=3.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=1.03;SOR=0.399;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,27:46:99:685,0,583
chr1	38450367	rs6680796	A	G	4952.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.79;SOR=0.815;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1207,129,0
chr1	38453576	rs10890285	A	C	2065.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DB;DP=67;ExcessHet=3.9794;FS=1.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.272;SOR=0.553;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,37:67:99:925,0,681
chr1	38455389	rs3935867	C	T	4564.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=1.470;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1578,141,0
chr1	38455891	rs4360494	G	C	1130.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.26;ReadPosRankSum=0.191;SOR=4.174;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:93:267,0,93
chr1	38462898	rs4274021	T	A	7748.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=1.172;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:38462898_T_A:2325,163,0:38462898
chr1	38462905	rs12724533	C	G	8061.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.19;SOR=1.061;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,58:58:99:1|1:38462898_T_A:2454,175,0:38462898
chr1	38463504	rs7366048	C	T	11764.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=282;ExcessHet=1.5490;FS=2.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.67;ReadPosRankSum=1.35;SOR=0.491;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,138:282:99:3686,0,3657
chr1	38464639	rs4570384	C	G	19248.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.19;SOR=1.350;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,195:195:99:6255,585,0
chr1	38484665	.	GT	G	60.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.19;ReadPosRankSum=1.52;SOR=0.481;VQSLOD=4.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:44:44,0,322
chr1	38485104	.	GTTTTTTTTTTGTTT	G	304.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.02;ReadPosRankSum=1.57;SOR=1.802;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:313,0,993
chr1	38488170	rs35867479	C	T	170.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.431;SOR=0.307;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:69:111,0,69
chr1	38488506	rs34251728	C	CT	998.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=6.40;ReadPosRankSum=-1.900e+00;SOR=0.651;VQSLOD=4.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,24:71:99:412,0,878
chr1	38489024	rs41302748	A	G	165.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.842;SOR=0.446;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:31:95,0,31
chr1	38554751	rs554916	T	C	226.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=1.26;SOR=0.512;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:110,0,146
chr1	38555083	rs531013	T	C	890.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=72;ExcessHet=3.0103;FS=5.345;MQ=60.00;MQRankSum=0.00;QD=12.36;ReadPosRankSum=0.677;SOR=1.516;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:899,0,974
chr1	39311998	rs3748563	G	A	575.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr1	39325063	rs1925678	T	C	2366.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=39;ExcessHet=3.9794;FS=2.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-5.200e-02;SOR=0.530;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,15:39:99:390,0,549
chr1	39330580	rs2147913	T	C	444.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=0.00;SOR=1.371;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr1	39332322	rs9439077	C	T	1435.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=0.408;SOR=1.143;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:394,0,193
chr1	39333118	rs11338710	CA	C	89.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.85;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:26:74,0,26
chr1	39339449	rs12127091	C	T	4969.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=81;ExcessHet=3.9794;FS=0.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=0.857;SOR=0.741;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1073,0,947
chr1	39339682	rs4494114	T	C	1385.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=1.20;SOR=1.863;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:272,0,171
chr1	39340282	rs880303	C	T	5526.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=85;ExcessHet=3.9794;FS=4.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=2.90;SOR=0.469;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,49:85:99:1265,0,898
chr1	39340607	rs16825625	A	G	1394.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=104;ExcessHet=3.0103;FS=1.588;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-9.070e-01;SOR=0.942;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1403,0,1254
chr1	39346905	rs1925677	T	G	474.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=-8.420e-01;SOR=2.448;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:116,0,29
chr1	39352083	rs4491033	T	G	1512.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.52;ReadPosRankSum=0.249;SOR=2.400;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:296,0,196
chr1	39352271	rs2147914	G	T	8154.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220e-01;DB;DP=149;ExcessHet=3.9794;FS=1.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=-6.250e-01;SOR=0.606;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,71:149:99:1843,0,1987
chr1	39352492	rs3790441	G	A	1904.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=0.780;SOR=0.865;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:303,0,317
chr1	39361615	rs9438984	G	A	1719.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DB;DP=35;ExcessHet=3.9794;FS=6.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.578;SOR=1.293;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:581,0,209
chr1	39377274	rs56978792	CTGTGTGTG	C	164.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.66;SOR=0.412;VQSLOD=4.65;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	39377331	.	C	T	59.11	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.70;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,2:3:4:70,4,0
chr1	39385086	rs7522863	A	C	3299.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.50;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.20;ReadPosRankSum=0.285;SOR=0.869;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,35:36:98:1231,98,0
chr1	39457006	rs12043492	C	T	31.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:40,0,32
chr1	39457293	rs111311750	T	C	449.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=9;ExcessHet=3.0103;FS=2.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.98;ReadPosRankSum=-1.437e+00;SOR=1.765;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:100,0,132
chr1	39466626	rs11205525	A	G	1411.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.380e-01;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=0.556;SOR=0.586;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,17:24:99:422,0,184
chr1	39466786	rs10888613	C	G	3484.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DB;DP=52;ExcessHet=3.9794;FS=1.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=1.27;SOR=0.629;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:690,0,592
chr1	39466955	.	CT	C	316.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.10;ReadPosRankSum=1.28;SOR=1.981;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:6:47,0,6
chr1	39468805	rs4147754	C	A	1041.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.10;ReadPosRankSum=-1.645e+00;SOR=3.841;VQSLOD=15.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,109
chr1	39494666	rs35464164	C	CT	1083.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DB;DP=45;ExcessHet=6.9897;FS=10.039;MQ=60.00;MQRankSum=0.00;QD=9.76;ReadPosRankSum=-2.220e-01;SOR=1.588;VQSLOD=2.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,6:45:15:15,0,1356
chr1	39494687	rs3768323	G	A	3920.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;DB;DP=42;ExcessHet=3.0103;FS=9.326;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.63;ReadPosRankSum=2.30;SOR=1.779;VQSLOD=18.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,12:42:99:356,0,870
chr1	39494760	rs3768322	G	A	1648.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=-8.790e-01;SOR=2.345;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:184,0,456
chr1	39550210	rs260972	C	T	4362.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.18;SOR=5.136;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1676,123,0
chr1	39568249	rs6667815	A	G	874.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=6.091;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr1	39568765	rs2282232	T	C	782.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=1.83;SOR=1.609;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:212,18,0
chr1	39571211	rs13374459	T	C	4154.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.35;DB;DP=63;ExcessHet=3.9794;FS=1.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=0.343;SOR=1.078;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2541,190,0
chr1	39696647	rs2490951	G	A	608.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.67;SOR=5.549;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	39715857	rs138875979	C	CA	750.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.310e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-1.441e+00;SOR=0.620;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,24:46:99:759,0,686
chr1	39717566	rs2490948	T	C	6464.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=1.242;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2187,222,0
chr1	39720180	rs75830873	C	A	107.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:116,0,29
chr1	39748921	rs2275188	G	A	3443.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=1.34;SOR=0.683;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,13:40:99:364,0,742
chr1	39751172	.	CT	C	148.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DP=24;ExcessHet=6.9897;FS=4.962;MQ=60.00;MQRankSum=0.00;QD=1.47;ReadPosRankSum=-5.070e-01;SOR=0.307;VQSLOD=4.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,3:24:6:6,0,443
chr1	39758993	rs6688708	C	G	486.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=0.00;SOR=0.495;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:40,0,31
chr1	39763242	rs2275187	G	A	6378.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=108;ExcessHet=3.9794;FS=1.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.593;SOR=0.838;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,58:108:99:1478,0,1306
chr1	39766055	rs2275186	C	T	3403.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.540e-01;DB;DP=64;ExcessHet=3.9794;FS=1.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=1.08;SOR=0.593;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,26:64:99:684,0,1102
chr1	39766138	rs59075192	TA	T	281.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=1.47;SOR=0.914;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:290,0,214
chr1	39766179	rs35489653	T	TA	585.34	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.800e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=0.00;SOR=4.977;VQSLOD=6.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:189,21,0
chr1	39790671	rs75008477	G	A	230.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-8.090e-01;SOR=0.693;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:239,0,198
chr1	39796844	rs201626891	CTTTTTTTTTTT	C	1169.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DB;DP=15;ExcessHet=3.9794;FS=12.616;MQ=59.85;MQRankSum=0.00;QD=27.99;ReadPosRankSum=1.12;SOR=3.675;VQSLOD=-1.207e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:15:99:261,0,351
chr1	39805938	.	AT	A	35.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.06;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:42:42,0,71
chr1	39806610	rs3116396	C	T	2427.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=1.734;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:837,75,0
chr1	39812620	rs2490944	G	T	7285.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=0.814;SOR=0.602;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,82:83:99:2344,236,0
chr1	39812822	rs2761764	C	A	10309.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=0.814;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3221,288,0
chr1	39815409	rs41270813	A	G	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=-1.521e+00;SOR=0.412;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:341,0,198
chr1	39816863	rs141216272	G	A	288.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=2.57;SOR=0.693;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:297,0,316
chr1	39824718	rs2256614	C	G	442.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=-1.920e-01;SOR=0.560;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:271,0,126
chr1	39833648	rs374434053	GA	G	88.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.03;ReadPosRankSum=1.15;SOR=1.179;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:18:38,0,18
chr1	39833675	rs3832005	GT	G	155.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=58.74;MQRankSum=0.00;QD=19.44;ReadPosRankSum=-1.383e+00;SOR=1.863;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:49:49,0,49
chr1	39843958	rs663449	G	A	577.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=21;ExcessHet=3.9794;FS=4.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-3.030e-01;SOR=0.169;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:302,0,328
chr1	39844708	rs660293	T	C	183.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.09;SOR=3.611;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	39876573	rs74607331	A	C	960.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128e+00;DB;DP=73;ExcessHet=3.0103;FS=0.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-3.820e-01;SOR=0.534;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,39:73:99:969,0,916
chr1	39889677	rs663892	G	A	781.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DB;DP=36;ExcessHet=3.9794;FS=2.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-1.590e-01;SOR=1.329;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,13:36:99:363,0,634
chr1	39893093	rs625384	C	T	437.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=15;ExcessHet=3.9794;FS=3.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=-1.588e+00;SOR=1.262;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:170,0,232
chr1	39894839	rs645061	A	G	2011.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.65;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.53;ReadPosRankSum=-9.870e-01;SOR=1.819;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:758,57,0
chr1	39895281	rs682571	G	A	58.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:67,0,63
chr1	39895460	rs683135	G	A	1778.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795e+00;DB;DP=57;ExcessHet=3.9794;FS=1.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.529;SOR=0.490;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,35:57:99:1040,0,628
chr1	39900058	rs71798934	C	CT	298.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.810e-01;DB;DP=16;ExcessHet=6.9897;FS=4.605;MQ=59.94;MQRankSum=0.00;QD=3.56;ReadPosRankSum=0.304;SOR=0.303;VQSLOD=4.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:43:43,0,188
chr1	39903129	rs596705	T	C	265.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-1.465e+00;SOR=1.270;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	39908506	rs587404	G	A	987.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.518e+00;DB;DP=42;ExcessHet=3.9794;FS=1.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.842;SOR=0.968;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:486,0,557
chr1	39910684	rs617577	T	C	62.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,73
chr1	39914363	rs668556	G	C	4182.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.872e+00;DB;DP=56;ExcessHet=3.0103;FS=1.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.25;ReadPosRankSum=-3.830e-01;SOR=0.834;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1612,168,0
chr1	39919234	rs687848	A	G	789.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=-2.000e-01;SOR=2.753;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:258,21,0
chr1	39919346	rs688320	T	G	409.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-1.140e-01;SOR=0.634;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:418,0,584
chr1	39927507	rs783820	G	A	3237.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.82;POSITIVE_TRAIN_SITE;QD=29.75;SOR=3.044;VQSLOD=5.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:795,72,0
chr1	39929067	rs144751463	TAGG	T	66.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,120
chr1	39929240	rs7554206	T	C	3571.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=1.67;SOR=0.690;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,25:48:99:726,0,619
chr1	39929582	rs783819	G	A	219.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=0.536;SOR=0.569;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:95:228,0,95
chr1	39930581	.	CAA	C	521.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.637;SOR=2.049;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:79:79,0,142
chr1	39934713	rs6698781	A	G	468.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=-9.670e-01;SOR=3.767;VQSLOD=15.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:75,0,35
chr1	39946330	rs796729	A	T	422.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.60;ReadPosRankSum=0.967;SOR=1.329;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr1	39950080	rs1775654	C	T	165.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=-5.980e-01;SOR=1.179;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	39957913	rs4660269	A	G	38365.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-01;DB;DP=838;ExcessHet=3.9794;FS=0.000;MQ=59.89;MQRankSum=1.19;QD=16.91;ReadPosRankSum=0.414;SOR=0.700;VQSLOD=0.872;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:349,489:838:99:11687,0,7460
chr1	39958080	rs10888798	C	G	12970.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.512e+00;DB;DP=325;ExcessHet=6.9897;FS=1.936;MQ=59.64;MQRankSum=-5.630e-01;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.799;SOR=0.855;VQSLOD=0.294;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:158,167:325:99:4502,0,4158
chr1	39977122	.	G	GTGGAGCATTTCCCAGAGGAC	120.64	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=34.12;QD=31.75;SOR=0.693;VQSLOD=3.69;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:9:1|1:39977114_C_G:135,9,0:39977114
chr1	39981462	rs200107336	G	T	1170.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DB;DP=206;ExcessHet=3.0103;FS=18.930;MQ=52.69;MQRankSum=-3.832e+00;NEGATIVE_TRAIN_SITE;QD=5.68;ReadPosRankSum=-1.587e+00;SOR=1.570;VQSLOD=-5.209e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,58:206:99:1179,0,3737
chr1	39988331	rs199870821	TTG	T	275.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DB;DP=15;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=-4.530e-01;SOR=3.056;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,8:15:99:284,0,247
chr1	39988708	rs2889739	A	G	1489.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053e+00;DB;DP=108;ExcessHet=3.0103;FS=2.771;MQ=59.60;MQRankSum=-1.909e+00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-4.400e-01;SOR=0.452;VQSLOD=0.288;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,57:108:99:1498,0,1328
chr1	39988913	rs148144829	CAG	C	2315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=125;ExcessHet=3.0103;FS=4.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.072;SOR=1.118;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:65,60:125:99:2324,0,2562
chr1	39989012	rs11584399	G	A	358.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.708;SOR=1.609;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:367,0,423
chr1	39991474	rs11583829	A	C	3974.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=247;ExcessHet=3.0103;FS=2.165;MQ=59.61;MQRankSum=-3.514e+00;NEGATIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=2.10;SOR=0.558;VQSLOD=-1.926e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:141,106:247:99:0|1:39991474_A_C:3983,0,7243:39991474
chr1	39991475	rs2230006	G	A	3974.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e-01;DB;DP=248;ExcessHet=3.0103;FS=1.550;MQ=59.61;MQRankSum=-3.526e+00;NEGATIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=2.12;SOR=0.572;VQSLOD=-1.887e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:142,106:248:99:0|1:39991474_A_C:3983,0,7243:39991474
chr1	39991588	rs3738676	G	T	4952.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.735;DB;DP=107;ExcessHet=1.5490;FS=1.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=0.454;SOR=0.839;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3588,321,0
chr1	40030823	rs12127094	C	T	1178.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.570e-01;DB;DP=90;ExcessHet=3.0103;FS=2.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.662;SOR=1.092;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1187,0,1228
chr1	40033651	rs11206343	C	T	809.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=0.636;SOR=0.746;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:818,0,601
chr1	40041757	rs111447240	G	A	97.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.992;SOR=0.368;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:106,0,186
chr1	40092089	rs2695320	T	C	5892.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=1.809;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1730,153,0
chr1	40096978	rs11378840	T	TA	149.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=1.44;SOR=0.892;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:28:66,0,28
chr1	40097136	rs11206504	T	C	1316.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.121e+00;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=0.303;SOR=0.749;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:409,0,460
chr1	40098054	rs58043961	G	A	99.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.598;SOR=2.093;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,111
chr1	40098328	rs784625	T	C	7350.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=0.976;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2319,225,0
chr1	40137790	rs145781390	G	GGCGAGTCCCGGCGAGGGAA	915.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=24;ExcessHet=3.9794;FS=6.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=-9.860e-01;SOR=2.546;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,13:24:99:511,0,1870
chr1	40149515	rs784633	A	G	3792.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.651e+00;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.102;SOR=0.800;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,28:64:99:873,0,1197
chr1	40149551	rs11206617	G	C	2558.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839e+00;DB;DP=111;ExcessHet=3.9794;FS=0.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.213;SOR=0.619;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,55:111:99:1520,0,1711
chr1	40149642	rs784634	G	T	13275.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722e+00;DB;DP=228;ExcessHet=3.9794;FS=1.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=-6.960e-01;SOR=0.835;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,120:228:99:3170,0,2851
chr1	40149870	rs113763288	C	G	5175.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.732e+00;DB;DP=41;ExcessHet=3.9794;FS=19.069;MQ=60.00;MQRankSum=0.00;QD=28.13;ReadPosRankSum=0.695;SOR=0.023;VQSLOD=10.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:905,0,536
chr1	40149926	.	C	CCCCGGGTGCCTCGCCTCCTCCCAT	1677.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.78;MQRankSum=0.00;QD=28.93;ReadPosRankSum=-1.435e+00;SOR=1.127;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:304,0,260
chr1	40149971	rs9662102	G	A	337.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.34;ReadPosRankSum=-8.800e-01;SOR=1.091;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:138,0,119
chr1	40150370	rs2746058	C	T	643.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=19;ExcessHet=3.9794;FS=9.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-1.690e-01;SOR=3.473;VQSLOD=12.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:230,0,319
chr1	40235331	rs144237350	C	T	77.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=54.83;MQRankSum=-3.603e+00;NEGATIVE_TRAIN_SITE;QD=0.88;ReadPosRankSum=-3.510e-01;SOR=0.343;VQSLOD=-4.251e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,7:48:80:80,0,1371
chr1	40307719	rs230310	A	G	675.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=0.450;SOR=1.284;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:301,0,175
chr1	40313849	rs1333742	T	C	2042.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.23;DB;DP=50;ExcessHet=3.9794;FS=6.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=1.13;SOR=1.291;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:777,0,584
chr1	40319587	rs2294814	A	C	2310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=92;ExcessHet=3.9794;FS=7.326;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.548;SOR=0.373;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,49:92:99:1272,0,1029
chr1	40349131	rs3845570	G	A	3641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.940e-01;DB;DP=132;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-3.670e-01;SOR=0.687;VQSLOD=6.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,68:132:99:1631,0,1676
chr1	40363054	rs3134614	G	C	8092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=1.536;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2873,270,0
chr1	40367592	rs804719	A	G	7091.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.03;SOR=0.818;VQSLOD=18.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2687,300,0
chr1	40421617	rs140696582	TG	T	524.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.10;ReadPosRankSum=-1.060e-01;SOR=0.602;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:219,0,312
chr1	40433771	rs3103778	A	G	3263.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=30;ExcessHet=3.0103;FS=1.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.22;ReadPosRankSum=-5.950e-01;SOR=0.440;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:590,0,177
chr1	40526003	rs3122419	T	C	1662.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=-1.240e-01;SOR=1.262;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:270,0,169
chr1	40533266	rs11207440	T	G	3539.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=0.770;VQSLOD=17.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:40533266_T_G:872,60,0:40533266
chr1	40533287	rs6665926	T	G	3795.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.36;SOR=1.255;VQSLOD=19.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:40533266_T_G:860,63,0:40533266
chr1	40533315	rs6665933	T	G	4673.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=2.189;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,28:28:90:1|1:40533315_T_G:1349,90,0:40533315
chr1	40533320	rs6665936	T	G	4870.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.82;SOR=2.280;VQSLOD=19.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:93:1|1:40533315_T_G:1394,93,0:40533315
chr1	40533326	rs6665937	T	G	4964.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.24;SOR=2.218;VQSLOD=19.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:96:1|1:40533315_T_G:1439,96,0:40533315
chr1	40533347	rs6665944	T	G	5158.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.87;ReadPosRankSum=1.39;SOR=0.892;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,29:30:80:1|1:40533315_T_G:1288,80,0:40533315
chr1	40536074	rs58190778	C	CT	15185.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.49;SOR=0.698;VQSLOD=4.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,131:131:99:5290,394,0
chr1	40555399	rs7543269	C	T	64.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=2.303;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	40556922	rs3122439	T	C	6893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.98;SOR=1.303;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1660,153,0
chr1	40556942	rs56654546	A	T	743.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;DB;DP=55;ExcessHet=3.0103;FS=2.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=2.50;SOR=0.400;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,30:55:99:752,0,683
chr1	40558256	rs4481840	C	G	3827.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.75;SOR=4.091;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:953,80,0
chr1	40562993	rs6600313	T	C	6956.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.56;DB;DP=60;ExcessHet=3.0103;FS=12.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.78;ReadPosRankSum=0.481;SOR=2.817;VQSLOD=12.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:1090,0,912
chr1	40626918	rs10493090	G	T	103.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=2.833;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr1	40688132	rs16827064	C	T	262.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-1.630e-01;SOR=1.179;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:271,0,294
chr1	40701378	rs2235985	T	G	381.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.185;SOR=0.892;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:98:157,0,98
chr1	40705726	rs10889205	A	T	3542.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.882e+00;DB;DP=60;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=-4.820e-01;SOR=0.720;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,28:60:99:631,0,994
chr1	40716753	rs6688124	A	G	252.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.71;SOR=2.303;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	40733658	rs7516571	A	G	1467.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.490e-01;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=0.341;SOR=0.862;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:329,0,426
chr1	40735472	rs16827106	A	G	227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=-7.320e-01;SOR=1.402;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:89:236,0,89
chr1	40735817	rs16827109	T	G	1423.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.683e+00;DB;DP=95;ExcessHet=3.0103;FS=0.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-1.161e+00;SOR=0.522;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,54:95:99:1432,0,1129
chr1	40737516	rs6677717	T	G	3182.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.15;SOR=1.981;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:784,75,0
chr1	40770733	rs11321597	CT	C	66.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=10;ExcessHet=6.9897;FS=4.708;MQ=59.35;MQRankSum=0.00;QD=4.77;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=4.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:38:38,0,67
chr1	40773123	rs2228567	G	C	1116.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.610e-01;DB;DP=80;ExcessHet=3.0103;FS=2.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-1.035e+00;SOR=1.038;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,41:80:99:1125,0,1025
chr1	40777138	.	CTG	C	100.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DP=8;ExcessHet=3.0103;FS=7.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.842;SOR=2.807;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,3:8:99:109,0,197
chr1	40777884	.	C	CT	375.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274e+00;DP=36;ExcessHet=6.9897;FS=3.943;MQ=60.00;MQRankSum=0.00;QD=4.42;ReadPosRankSum=0.262;SOR=0.805;VQSLOD=5.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,13:36:99:276,0,280
chr1	40840268	rs72258841	CGT	C	595.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=33;ExcessHet=3.0103;FS=3.581;MQ=60.00;MQRankSum=0.00;QD=19.84;ReadPosRankSum=0.886;SOR=1.643;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,13:33:99:604,0,437
chr1	40840274	.	T	C	330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DP=36;ExcessHet=3.0103;FS=4.066;MQ=60.00;MQRankSum=0.00;QD=9.17;ReadPosRankSum=1.02;SOR=1.888;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,10:36:99:339,0,1380
chr1	40840296	rs3048086	T	A	1656.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.530e-01;DB;DP=42;ExcessHet=6.9897;FS=13.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=1.25;SOR=1.911;VQSLOD=1.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,17:42:99:541,0,755
chr1	40840353	rs1003710	A	G	2896.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=76;ExcessHet=6.9897;FS=0.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-1.410e-01;SOR=0.640;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:893,0,1134
chr1	40859213	rs35913943	CTT	C,CT	191.52	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.393;DB;DP=11;ExcessHet=1.5490;FS=5.727;MQ=58.91;MQRankSum=0.00;QD=10.64;ReadPosRankSum=1.10;SOR=0.094;VQSLOD=4.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,3,6:11:20:123,49,106,20,0,30
chr1	40872195	rs209600	G	A	1018.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.87;ReadPosRankSum=-1.117e+00;SOR=0.929;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:227,0,227
chr1	40872623	rs2982510	C	T	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DB;DP=26;ExcessHet=3.0103;FS=5.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.500;SOR=2.765;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:237,0,575
chr1	40879636	rs209604	T	C	853.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.62;ReadPosRankSum=-1.368e+00;SOR=1.542;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:71:118,0,71
chr1	40879808	rs209605	G	T	3974.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103e+00;DB;DP=51;ExcessHet=3.0103;FS=6.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=0.961;SOR=0.282;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:791,0,629
chr1	40879952	rs2294752	T	G	450.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DB;DP=41;ExcessHet=3.0103;FS=3.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-1.990e-01;SOR=1.329;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:459,0,647
chr1	40881041	rs209606	C	G	8931.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=124;ExcessHet=3.0103;FS=4.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=-3.200e-01;SOR=0.446;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,63:124:99:1552,0,1326
chr1	40881840	rs1007263	G	A	184.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=13;ExcessHet=3.0103;FS=7.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.413;SOR=3.477;VQSLOD=14.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:193,0,192
chr1	40882900	.	CT	C,CTT	1284.87	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.244;DP=74;ExcessHet=3.9794;FS=0.000;MQ=59.73;MQRankSum=0.00;QD=7.10;ReadPosRankSum=-4.520e-01;SOR=0.692;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:22,14,20:74:14:329,119,663,14,0,489
chr1	40927882	rs2036195	G	A	450.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=35;ExcessHet=3.0103;FS=1.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.215;SOR=0.420;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:459,0,524
chr1	40928067	rs2036196	A	T	901.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-01;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=1.18;SOR=0.671;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,38:85:99:910,0,1308
chr1	40955156	rs10789144	A	T	1274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=39;ExcessHet=3.9794;FS=0.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=1.52;SOR=0.596;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,20:39:99:602,0,519
chr1	41092578	rs72941570	T	C	959.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.89;SOR=6.593;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:976,78,0
chr1	41094320	rs2076334	C	G	776.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=1.802;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:793,72,0
chr1	41095171	rs2076333	A	G	648.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=1.402;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:665,60,0
chr1	41095350	rs61779213	A	C	219.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=2.303;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr1	41098478	rs542214	A	G	539.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=0.536;SOR=1.802;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr1	41101572	rs2253835	A	G	1669.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.660e-01;DB;DP=29;ExcessHet=3.9794;FS=0.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=-4.900e-02;SOR=0.553;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:863,87,0
chr1	41107360	rs491619	T	C	12490.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.19;DB;DP=257;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=0.132;SOR=0.667;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,257:257:99:7865,769,0
chr1	41107612	rs2076332	C	G	1950.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=2.712;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1967,165,0
chr1	41107699	rs1534955	C	G	272.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=4.407;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:289,24,0
chr1	41204569	rs1057925	C	T	2303.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;DB;DP=41;ExcessHet=3.9794;FS=1.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=1.27;SOR=0.546;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1250,123,0
chr1	41212950	rs2274956	G	A	1586.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=29.21;SOR=7.378;VQSLOD=7.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	41220396	rs2885328	G	A	1068.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.08;SOR=6.666;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:497,39,0
chr1	41228443	rs3767954	C	G	602.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.71;SOR=5.421;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	41229180	rs4660455	G	A	538.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.47;SOR=2.985;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr1	41282919	rs13374844	C	T	3054.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=109;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-4.200e-02;SOR=0.682;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,52:109:99:0|1:41282919_C_T:2020,0,3218:41282919
chr1	41282921	rs13374845	C	T	3054.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476e+00;DB;DP=111;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=-1.510e-01;SOR=0.698;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,53:111:99:0|1:41282919_C_T:2020,0,3218:41282919
chr1	41284119	rs2296838	C	G	1132.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180e-01;DB;DP=38;ExcessHet=3.9794;FS=6.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-6.110e-01;SOR=1.217;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:400,0,810
chr1	41284366	rs2361660	G	C	6910.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.620e-01;DB;DP=72;ExcessHet=3.0103;FS=2.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=-1.680e-01;SOR=0.436;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2357,216,0
chr1	41284406	rs2361659	A	G	4604.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.700e-02;DB;DP=49;ExcessHet=3.0103;FS=1.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=1.38;SOR=0.522;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1603,147,0
chr1	41284509	rs2361658	C	G	859.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=2;ExcessHet=3.0103;FS=3.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=2.65;SOR=2.303;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	41285087	rs4660468	T	C	15670.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.011;DB;DP=211;ExcessHet=3.0103;FS=1.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.74;ReadPosRankSum=0.391;SOR=0.721;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,211:211:99:6265,633,0
chr1	41285553	rs55737429	T	C	5588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=205;ExcessHet=3.9794;FS=2.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.05;SOR=0.588;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,133:205:99:3381,0,1617
chr1	41288105	rs148218398	G	C	320.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.56;ReadPosRankSum=-1.059e+00;SOR=0.776;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:329,0,234
chr1	41289579	rs3767939	C	T	415.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.753;SOR=0.693;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:29:29,0,114
chr1	41292377	rs2025897	G	A	1310.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740e-01;DB;DP=109;ExcessHet=3.0103;FS=1.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-2.517e+00;SOR=0.868;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,56:109:99:1319,0,1227
chr1	41298546	rs5773705	G	GC	4780.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=9.967;VQSLOD=8.56;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1794,165,0
chr1	41298652	rs913378	T	C	21091.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=226;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.72;ReadPosRankSum=-1.790e-01;SOR=1.430;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,224:226:99:6862,628,0
chr1	41298910	rs55916242	G	A	491.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-3.710e-01;SOR=1.136;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:500,0,732
chr1	41301019	rs729589	T	C	224.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.464;SOR=0.836;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:97:97,0,108
chr1	41304306	rs55862109	A	G	1434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.417e+00;DB;DP=90;ExcessHet=3.0103;FS=1.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-3.920e-01;SOR=0.284;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,45:90:99:1443,0,1558
chr1	41327281	rs1057635	C	A	3664.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139e+00;DB;DP=178;ExcessHet=3.9794;FS=5.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.850;SOR=0.916;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,80:178:99:1752,0,2408
chr1	41327873	rs12081504	G	C	1025.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DB;DP=25;ExcessHet=3.9794;FS=1.365;MQ=60.00;MQRankSum=0.00;QD=19.36;ReadPosRankSum=0.00;SOR=1.055;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:240,0,417
chr1	41449291	rs375103766	CT	C	252.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030e-01;DB;DP=16;ExcessHet=6.9897;FS=4.455;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.96;ReadPosRankSum=1.05;SOR=0.071;VQSLOD=6.31;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,3:16:25:0|1:41449291_CT_C:25,0,365:41449291
chr1	41449302	rs72663731	T	C	249.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.66;ReadPosRankSum=-9.930e-01;SOR=0.593;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,8:17:99:1|0:41449291_CT_C:258,0,272:41449291
chr1	41452880	rs12044786	G	A	532.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.870;SOR=0.436;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:211,0,469
chr1	41453286	rs5773721	GT	G	3679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.562e+00;DB;DP=33;ExcessHet=3.0103;FS=1.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=0.031;SOR=1.042;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1236,99,0
chr1	41454425	rs6675122	G	A	355.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272e+00;DB;DP=29;ExcessHet=3.0103;FS=3.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-6.600e-02;SOR=0.283;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:364,0,382
chr1	41466550	rs12735455	T	A	699.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:75,0,62
chr1	41466803	rs12718433	G	A	2257.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=39;ExcessHet=1.5490;FS=4.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=0.367;SOR=1.098;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:484,0,518
chr1	41475085	rs12144160	A	G	5591.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=1.637;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2410,228,0
chr1	41475571	rs61780435	C	T	200.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=6;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=0.189;SOR=0.105;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:105,0,99
chr1	41481596	rs41308248	A	G	775.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.43;DB;DP=48;ExcessHet=3.0103;FS=6.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-1.035e+00;SOR=0.065;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:784,0,867
chr1	41483951	rs11209361	G	C	1898.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=31;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.13;ReadPosRankSum=1.23;SOR=0.715;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:582,0,470
chr1	41485902	rs3738368	C	G	2123.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=-6.100e-01;SOR=0.815;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:698,0,889
chr1	41486245	rs1138293	C	T	3430.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=170;ExcessHet=3.9794;FS=2.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-3.500e-01;SOR=0.561;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,82:170:99:1885,0,2035
chr1	41493749	rs11555079	G	A	1994.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719e+00;DB;DP=42;ExcessHet=1.5490;FS=2.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=-1.183e+00;SOR=0.287;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:409,0,822
chr1	41494222	rs11578697	G	T	5885.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765e+00;DB;DP=124;ExcessHet=1.5490;FS=1.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.64;ReadPosRankSum=0.155;SOR=0.552;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,58:124:99:1404,0,1841
chr1	41540853	rs2011981	A	T	6696.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801e+00;DB;DP=91;ExcessHet=1.5490;FS=1.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.48;ReadPosRankSum=-8.060e-01;SOR=0.551;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,46:91:99:0|1:41540853_A_T:1803,0,2603:41540853
chr1	41540861	rs2011982	T	C	6955.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.700e-02;DB;DP=102;ExcessHet=1.5490;FS=2.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.76;ReadPosRankSum=-8.540e-01;SOR=0.509;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,53:102:99:0|1:41540853_A_T:1923,0,2757:41540853
chr1	41618442	rs213768	A	T	1791.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.850e-01;DB;DP=32;ExcessHet=1.5490;FS=1.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=1.25;SOR=0.511;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:410,0,528
chr1	41848060	rs12092825	C	T	7426.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459e+00;DB;DP=70;ExcessHet=3.0103;FS=0.953;MQ=60.00;MQRankSum=0.00;QD=29.95;ReadPosRankSum=-9.420e-01;SOR=0.923;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,42:70:99:1229,0,746
chr1	41848296	rs4359027	G	A	25951.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=345;ExcessHet=3.0103;FS=2.634;MQ=60.00;MQRankSum=0.00;QD=25.03;ReadPosRankSum=0.391;SOR=0.984;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:158,187:345:99:4479,0,3852
chr1	41949595	rs2759256	G	A	11937.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=2.628;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3857,323,0
chr1	41949628	rs2759257	A	C	14670.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579e+00;DB;DP=153;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.12;ReadPosRankSum=0.051;SOR=0.887;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4914,456,0
chr1	41950312	rs2984691	T	C	7150.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=1.116;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2126,216,0
chr1	41950473	rs6674101	G	A	746.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=3.000e-03;SOR=0.527;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:161,0,224
chr1	41976017	rs678110	C	T	7787.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=91;ExcessHet=3.0103;FS=0.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.96;ReadPosRankSum=0.345;SOR=0.648;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2939,272,0
chr1	41976328	rs9439043	T	C	6343.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=0.960;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2085,188,0
chr1	41978359	rs2984693	G	T	1173.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=3.126;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:302,24,0
chr1	41978566	rs2991344	T	G	6131.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=0.726;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2438,222,0
chr1	41978825	rs2483689	C	G	15342.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=34.25;SOR=1.179;VQSLOD=3.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,191:191:99:6499,573,0
chr1	41979156	rs615177	A	G	4399.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=59;ExcessHet=3.9794;FS=4.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=1.14;SOR=0.991;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,29:59:99:851,0,835
chr1	41983912	rs2810547	C	A	8293.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.38;ReadPosRankSum=-9.910e-01;SOR=0.933;VQSLOD=6.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2512,243,0
chr1	41990686	rs116807289	C	T	162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.551;SOR=0.527;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:171,0,173
chr1	41990795	rs2759248	T	C	180.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:73,0,35
chr1	41990867	rs941970	G	A	132.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=-4.310e-01;SOR=0.368;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,69
chr1	42041479	rs1815257	A	C	1544.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.41;DB;DP=62;ExcessHet=3.9794;FS=1.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-1.670e+00;SOR=0.885;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:820,0,952
chr1	42041806	rs10749832	G	A	133.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:74,0,31
chr1	42045302	rs2810564	G	A	3040.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.55;SOR=2.250;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:91:929,91,0
chr1	42046812	rs2810565	C	T	5102.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=0.889;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1585,151,0
chr1	42048745	rs2810566	T	C	13447.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.33;SOR=1.252;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4451,433,0
chr1	42049032	rs2984694	G	A	10633.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=0.924;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3469,311,0
chr1	42049140	rs2475842	C	G	13380.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.34;SOR=1.259;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3884,339,0
chr1	42050182	rs142189176	G	A	2457.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=202;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.16;ReadPosRankSum=0.955;SOR=0.719;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,95:202:99:2466,0,2639
chr1	42620154	rs885846	A	G	523.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=0.524;SOR=2.833;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:243,21,0
chr1	42629040	rs2232224	A	G	9598.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.80;SOR=1.167;VQSLOD=5.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2487,225,0
chr1	42630364	rs2071499	G	A	3081.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=-1.320e-01;SOR=0.640;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1494,150,0
chr1	42645426	.	A	C	680.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.46;ReadPosRankSum=0.166;SOR=0.631;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:689,0,492
chr1	42655376	rs17376918	C	T	71.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=2.303;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	42656819	rs16829212	T	A	1263.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=1.10;SOR=2.584;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:56:728,56,0
chr1	42657196	rs1139978	T	G	1525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=117;ExcessHet=3.0103;FS=3.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-4.160e-01;SOR=0.427;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,54:117:99:1534,0,1609
chr1	42693597	rs343376	A	G	11125.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.57;SOR=0.910;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2922,305,0
chr1	42730525	rs617824	T	C	587.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=5.549;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	42846786	rs11210626	G	C	5940.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.000e-03;DB;DP=148;ExcessHet=1.5490;FS=1.828;MQ=60.00;MQRankSum=0.00;QD=21.92;ReadPosRankSum=0.504;SOR=0.854;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4292,444,0
chr1	42864868	rs4660630	C	T	453.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=2.147;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:470,39,0
chr1	42865468	rs56751964	G	A	265.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=4.174;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:282,21,0
chr1	42870338	rs1105670	C	T	1260.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=5.610;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1277,99,0
chr1	42880516	rs1055055	T	C	5398.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.400;DB;DP=114;ExcessHet=1.5490;FS=6.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=0.959;SOR=0.538;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3692,341,0
chr1	42880841	rs3831262	T	TCA	1138.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=-4.340e-01;SOR=1.387;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,21:21:63:933,63,0
chr1	42880866	rs2484436	G	A	1190.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.34;SOR=5.549;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:444,33,0
chr1	42898671	rs2494376	A	G	641.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=5.892;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr1	42898843	rs1034268	A	G	4537.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.69;DB;DP=79;ExcessHet=3.9794;FS=4.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.361;SOR=1.070;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2475,237,0
chr1	42915527	rs12142723	C	A	1133.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368e+00;DB;DP=21;ExcessHet=6.9897;FS=3.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=-7.970e-01;SOR=2.059;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:394,0,363
chr1	42915727	rs12047095	C	G	1346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=148;ExcessHet=3.0103;FS=3.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.365;SOR=1.028;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,58:148:99:1355,0,2233
chr1	42915753	rs11210647	T	C	1348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=-1.465e+00;SOR=0.731;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,51:128:99:1357,0,2069
chr1	42915973	rs17379185	T	C	201.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-4.050e-01;SOR=0.963;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:65:65,0,152
chr1	42921211	rs9786998	C	G	233.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=14;ExcessHet=3.0103;FS=2.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.746;SOR=2.179;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:242,0,148
chr1	42925080	rs55861965	T	C	252.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.638e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-1.068e+00;SOR=1.445;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:261,0,323
chr1	42925688	rs9787162	T	G	208.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:53:217,0,53
chr1	42939102	.	CT	C	186.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.480e-01;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.68;ReadPosRankSum=-2.630e-01;SOR=0.602;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:41:70,0,41
chr1	42948585	rs6656344	C	A	271.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.420e-01;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=-9.050e-01;SOR=2.030;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:280,0,215
chr1	42986770	rs113974882	A	G	240.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.36;ReadPosRankSum=1.47;SOR=0.527;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:24:0|1:42986770_A_G:249,0,24:42986770
chr1	42986779	rs111835308	G	A	240.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.36;ReadPosRankSum=1.47;SOR=0.527;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:24:0|1:42986770_A_G:249,0,24:42986770
chr1	42986812	rs80031257	CT	C	354.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.464;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.88;ReadPosRankSum=0.272;SOR=0.446;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:254,27,0
chr1	43002744	rs4660643	G	A	795.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608e+00;DB;DP=66;ExcessHet=3.0103;FS=2.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-3.790e-01;SOR=0.437;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:804,0,1016
chr1	43011030	rs11210668	A	G	98.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-6.010e-01;SOR=0.283;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:107,0,177
chr1	43011389	rs6661835	A	G	197.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-1.174e+00;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:206,0,222
chr1	43021698	rs4598532	G	T	43.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-6.740e-01;SOR=0.132;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:52:52,0,276
chr1	43021810	rs12038786	C	T	372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.920e-01;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=2.21;SOR=0.973;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,14:31:99:1|0:43021797_G_T:381,0,519:43021797
chr1	43023559	rs67367315	GAAGAC	G	114.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.66;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:68:123,0,68
chr1	43023713	rs71798684	G	GA	183.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DB;DP=23;ExcessHet=3.0103;FS=3.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.97;ReadPosRankSum=1.10;SOR=0.588;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,9:23:99:192,0,351
chr1	43030045	rs6690354	A	G	874.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.49;SOR=6.439;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	43030158	rs67724541	G	A	56.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=56.98;MQRankSum=-3.905e+00;NEGATIVE_TRAIN_SITE;QD=3.31;ReadPosRankSum=-1.201e+00;SOR=1.022;VQSLOD=-3.483e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,3:17:65:65,0,409
chr1	43042703	rs12049046	C	T	721.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.160e-01;DB;DP=67;ExcessHet=3.0103;FS=0.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-7.910e-01;SOR=0.941;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,32:67:99:730,0,873
chr1	43046292	rs1555654	G	T	269.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.120;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:82,0,31
chr1	43047057	rs12037518	A	G	524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=32;ExcessHet=3.0103;FS=3.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.623;SOR=1.646;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:533,0,426
chr1	43054894	rs112727831	CA	C	275.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.940e-01;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.50;ReadPosRankSum=-5.240e-01;SOR=1.329;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:51:130,0,51
chr1	43055243	rs10789417	C	G	1193.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.080e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=1.14;SOR=0.970;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:830,66,0
chr1	43076555	rs34595968	CT	C	342.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=7;ExcessHet=6.9897;FS=2.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.183;SOR=0.186;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:28:102,0,28
chr1	43110276	rs7523056	G	A	1650.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.20;DB;DP=13;ExcessHet=3.0103;FS=7.220;MQ=59.83;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.57;ReadPosRankSum=1.05;SOR=2.848;VQSLOD=0.471;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:484,39,0
chr1	43119661	rs16829829	C	A	872.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.75;SOR=0.749;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,30:65:99:881,0,892
chr1	43124701	rs6600419	A	G	6042.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.795;DB;DP=57;ExcessHet=3.0103;FS=2.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=0.719;SOR=0.964;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1938,171,0
chr1	43124859	rs3738494	C	T	6774.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.820e-01;DB;DP=69;ExcessHet=3.0103;FS=1.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.88;ReadPosRankSum=-1.625e+00;SOR=0.854;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2401,207,0
chr1	43126733	rs3768025	G	A	3514.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.940e-01;DB;DP=77;ExcessHet=6.9897;FS=1.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-1.223e+00;SOR=0.859;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1007,0,1211
chr1	43126766	rs3768026	C	A	2247.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=51;ExcessHet=6.9897;FS=0.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-1.467e+00;SOR=0.570;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:728,0,760
chr1	43132393	rs35844708	G	GA	3224.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.464;DB;DP=48;ExcessHet=3.9794;FS=1.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=-3.570e-01;SOR=1.038;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1708,144,0
chr1	43158943	rs144349068	CT	C	555.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.900;DB;DP=9;ExcessHet=3.9794;FS=4.988;MQ=60.00;MQRankSum=0.00;QD=14.26;ReadPosRankSum=0.204;SOR=3.040;VQSLOD=3.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:219,27,0
chr1	43162182	rs113762321	GC	GCC,G	660.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.47;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.34;ReadPosRankSum=1.74;SOR=0.693;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,9:16:99:321,222,296,116,0,166
chr1	43166227	rs3850847	T	G	470.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=58.95;POSITIVE_TRAIN_SITE;QD=30.90;SOR=3.611;VQSLOD=5.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:219,15,0
chr1	43200526	rs912075	T	C	494.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=0.272;SOR=1.402;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:139,0,137
chr1	43201216	rs12141833	A	C	452.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.31;ReadPosRankSum=-6.740e-01;SOR=1.292;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,72
chr1	43201534	rs4660658	G	A	563.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DB;DP=48;ExcessHet=3.0103;FS=2.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.567;SOR=0.641;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,24:48:99:572,0,546
chr1	43201614	rs9660973	C	T	471.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.488e+00;DB;DP=37;ExcessHet=3.0103;FS=2.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=1.16;SOR=0.348;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:480,0,344
chr1	43212291	rs13871	G	A	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=-2.110e-01;SOR=0.293;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:184,0,368
chr1	43212431	rs4660662	A	G	9311.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=1.135;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2865,264,0
chr1	43212926	rs67014447	G	A	2008.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464e+00;DB;DP=174;ExcessHet=3.0103;FS=4.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-1.110e+00;SOR=0.436;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,84:174:99:2017,0,2311
chr1	43213285	rs72661349	C	T	749.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;DB;DP=52;ExcessHet=3.0103;FS=1.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-1.650e-01;SOR=0.540;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:758,0,697
chr1	43213499	rs3738499	C	T	3244.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DB;DP=49;ExcessHet=3.9794;FS=5.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=0.440;SOR=1.201;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:727,0,598
chr1	43213610	rs7552138	T	C	1200.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.86;DB;DP=5;ExcessHet=3.0103;FS=1.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.29;ReadPosRankSum=-9.270e-01;SOR=0.394;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr1	43223489	rs6700677	C	T	922.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=56;ExcessHet=3.0103;FS=2.412;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=-4.220e-01;SOR=1.209;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,32:56:99:931,0,528
chr1	43227867	rs2760070	G	A	1406.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.14;ReadPosRankSum=0.227;SOR=0.551;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr1	43228189	rs2816593	T	A	5776.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=59;ExcessHet=3.0103;FS=5.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=-7.340e-01;SOR=1.658;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1858,165,0
chr1	43231686	rs148555652	CCG	C	160.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=-5.240e-01;SOR=1.863;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:26:0|1:43231686_CCG_C:169,0,26:43231686
chr1	43231692	rs60903408	C	A	272.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.28;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:26:0|1:43231686_CCG_C:169,0,26:43231686
chr1	43232504	rs55716016	C	A	9579.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DB;DP=729;ExcessHet=3.0103;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.407;SOR=0.639;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:327,402:729:99:9588,0,7382
chr1	43232798	rs11210712	G	T	1429.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.650e-01;DB;DP=21;ExcessHet=6.9897;FS=0.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=-1.171e+00;SOR=0.485;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,7:21:99:0|1:43232798_G_T:245,0,952:43232798
chr1	43232807	rs3738504	C	G	2133.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086e+00;DB;DP=17;ExcessHet=3.9794;FS=2.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.33;ReadPosRankSum=1.26;SOR=0.357;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,6:17:99:0|1:43232798_G_T:251,0,875:43232798
chr1	43233484	rs61775634	G	A	877.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.466;SOR=1.259;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:375,0,428
chr1	43239395	rs2760075	G	A	3616.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.466e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=-9.160e-01;SOR=0.739;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:867,72,0
chr1	43281980	rs56361642	A	C	1162.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=2.08;SOR=1.022;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:333,0,280
chr1	43282430	rs74070053	T	C	59.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:68,0,31
chr1	43296173	rs33950227	C	T	4276.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=128;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=0.525;SOR=0.686;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,57:128:99:1354,0,1665
chr1	43296195	rs33953680	C	T	4368.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962e+00;DB;DP=131;ExcessHet=6.9897;FS=1.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=0.627;SOR=0.623;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,58:131:99:1448,0,1999
chr1	43297082	rs17386017	T	G	365.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=-5.980e-01;SOR=1.244;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:109,0,30
chr1	43300663	rs4660672	T	C	3086.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.908e+00;DB;DP=26;ExcessHet=3.0103;FS=4.623;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=-1.851e+00;SOR=0.189;VQSLOD=6.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1041,78,0
chr1	43300921	rs4660673	C	G	4395.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.177e+00;DB;DP=51;ExcessHet=3.0103;FS=2.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=0.606;SOR=0.439;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1625,153,0
chr1	43301021	rs59816087	GCC	G	1309.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=1.12;SOR=0.465;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:273,0,270
chr1	43302515	rs11581978	A	T	68.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=2.303;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	43304368	rs35761132	C	A	66.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.26;SOR=2.303;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	43317793	rs9960	G	A	215.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=0.431;SOR=1.863;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:58:224,0,58
chr1	43393245	rs11282849	G	GGGTGAGAAAT	2181.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.57;ReadPosRankSum=-1.980e-01;SOR=0.564;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,11:13:99:498,0,203
chr1	43409179	rs12718444	G	T	803.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234e+00;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=59.74;MQRankSum=1.03;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=1.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,32:64:99:812,0,916
chr1	43409199	rs41310434	A	G	628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230e+00;DB;DP=56;ExcessHet=3.0103;FS=1.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-1.810e-01;SOR=0.507;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,25:56:99:637,0,840
chr1	43409364	rs34964576	T	C	271.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-02;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=1.16;SOR=1.038;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:280,0,127
chr1	43409420	rs35022307	C	T	91.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-1.368e+00;SOR=1.609;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:82:100,0,82
chr1	43418026	rs2297972	C	T	5109.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.895e+00;DB;DP=65;ExcessHet=3.0103;FS=2.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=0.652;SOR=0.953;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1977,195,0
chr1	43418056	rs3216016	AT	A	995.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DB;DP=60;ExcessHet=3.0103;FS=2.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.053;SOR=1.079;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,32:60:99:1004,0,849
chr1	43424051	rs114530232	A	G	98.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-1.282e+00;SOR=0.368;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:58:106,0,58
chr1	43610910	rs626842	T	G	7100.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.081;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1802,180,0
chr1	43611005	rs627263	G	A	4125.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.887e+00;DB;DP=68;ExcessHet=1.5490;FS=2.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=-2.500e+00;SOR=0.854;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,39:68:99:976,0,766
chr1	43611230	rs641350	G	T	692.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=3.0103;FS=6.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.12;ReadPosRankSum=-9.920e-01;SOR=4.073;VQSLOD=13.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:96:96,0,147
chr1	43613786	rs519666	G	T	4566.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.279;DB;DP=95;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.91;ReadPosRankSum=0.419;SOR=0.747;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,55:95:99:1477,0,963
chr1	43613850	rs34514362	C	CA	1426.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.070e-01;DB;DP=24;ExcessHet=1.5490;FS=4.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=-7.970e-01;SOR=0.180;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,16:24:99:436,0,183
chr1	43616337	rs475093	G	C	634.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.080e-01;DB;DP=58;ExcessHet=3.0103;FS=1.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.109;SOR=0.874;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:643,0,745
chr1	43616677	rs201473714	TA	T	37.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.48;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:46:46,0,75
chr1	43618596	rs12074551	G	A	5958.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.856e+00;DB;DP=122;ExcessHet=1.5490;FS=0.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-3.440e-01;SOR=0.636;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,57:122:99:1290,0,1678
chr1	43618726	rs2453416	A	G	2796.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DB;DP=50;ExcessHet=1.5490;FS=1.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=0.568;SOR=0.914;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:730,0,674
chr1	43621759	rs589819	G	T	2003.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=72;ExcessHet=3.9794;FS=3.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=1.06;SOR=1.005;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,31:72:99:861,0,1023
chr1	43632353	rs1749436	C	G	2726.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.10;SOR=5.994;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:43632353_C_G:990,66,0:43632353
chr1	43632354	rs1749437	A	C	2726.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=5.994;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:43632353_C_G:990,66,0:43632353
chr1	43632536	rs7163	C	T	6843.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DB;DP=167;ExcessHet=1.5490;FS=1.991;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=1.63;SOR=0.568;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,73:167:99:1590,0,2174
chr1	43632815	rs1749438	T	G	5842.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=81;ExcessHet=1.5490;FS=2.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=1.04;SOR=0.899;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,38:81:99:0|1:43632815_T_G:1455,0,2300:43632815
chr1	43632816	rs1782374	T	C	5842.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=81;ExcessHet=1.5490;FS=1.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=0.952;SOR=0.884;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,38:81:99:0|1:43632815_T_G:1455,0,2300:43632815
chr1	43632997	rs1691302	A	G	1168.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-02;DB;DP=20;ExcessHet=1.5490;FS=4.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=-1.862e+00;SOR=1.781;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:206,0,288
chr1	43634867	rs11210797	C	T	1169.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.536e+00;DB;DP=31;ExcessHet=1.5490;FS=1.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=-5.540e-01;SOR=1.469;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:470,0,534
chr1	43636484	rs1049276	C	G	3479.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=91;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.435;SOR=0.650;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,41:91:99:912,0,1160
chr1	43636974	rs1010620	C	T	2308.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DB;DP=32;ExcessHet=1.5490;FS=2.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=1.11;SOR=0.378;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,13:32:99:350,0,592
chr1	43637165	.	T	G	1752.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.260e-01;DP=137;ExcessHet=3.0103;FS=1.361;MQ=59.91;MQRankSum=-9.930e-01;QD=12.79;ReadPosRankSum=1.19;SOR=0.853;VQSLOD=0.376;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:69,68:137:99:1761,0,1785
chr1	43637549	rs1691289	A	G	5111.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.758e+00;DB;DP=93;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=-1.520e-01;SOR=0.846;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,59:93:99:1716,0,1029
chr1	43637932	rs9519	T	C	18653.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=368;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=-1.470e-01;SOR=0.740;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:168,200:368:99:5359,0,4286
chr1	43638185	rs1782383	A	G	1928.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DB;DP=23;ExcessHet=1.5490;FS=2.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.14;ReadPosRankSum=-1.150e+00;SOR=0.260;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:432,0,321
chr1	43638334	rs2934883	A	T	411.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.74;ReadPosRankSum=-1.006e+00;SOR=2.049;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:95:95,0,147
chr1	43638410	rs1782386	G	C	2083.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.811e+00;DB;DP=43;ExcessHet=1.5490;FS=1.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=1.07;SOR=0.986;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:503,0,681
chr1	43638457	rs1782387	T	A	3202.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256e+00;DB;DP=74;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.50;ReadPosRankSum=1.13;SOR=0.774;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,34:74:99:797,0,997
chr1	43642988	rs12094101	G	T	2931.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=34;ExcessHet=1.5490;FS=0.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=-1.152e+00;SOR=0.530;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:322,0,566
chr1	43647638	rs72968443	A	C	95.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-1.890e-01;SOR=2.093;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:71:104,0,71
chr1	43649508	rs663824	A	G	5997.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.810e-01;DB;DP=50;ExcessHet=3.0103;FS=3.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.08;ReadPosRankSum=-1.631e+00;SOR=0.352;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1832,150,0
chr1	43650741	rs598336	T	C	4552.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DB;DP=66;ExcessHet=3.0103;FS=0.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=0.347;SOR=0.548;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,35:66:99:952,0,816
chr1	43652281	.	CAA	C	494.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169e+00;DP=11;ExcessHet=6.9897;FS=0.000;MQ=58.79;MQRankSum=-4.020e-01;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-7.090e-01;SOR=0.827;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:11:25:25,0,250
chr1	43652369	rs6413971	T	C	8669.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.27;SOR=1.112;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2609,236,0
chr1	43663376	rs513009	A	G	3874.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.116;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=0.384;SOR=0.783;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1252,111,0
chr1	43664119	rs603560	A	G	2807.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DB;DP=54;ExcessHet=3.9794;FS=6.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=1.53;SOR=0.242;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:796,0,745
chr1	43664218	rs603123	C	T	4883.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=119;ExcessHet=3.9794;FS=3.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-7.680e-01;SOR=0.537;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,55:119:99:1205,0,1526
chr1	43664319	rs10711519	TA	T	1775.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=45;ExcessHet=3.9794;FS=5.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.588;SOR=0.324;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,17:45:99:352,0,664
chr1	43665255	rs143705230	AAG	A	1453.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.35;ReadPosRankSum=1.24;SOR=2.147;VQSLOD=5.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:61:232,0,61
chr1	43675467	rs2453412	G	A	13425.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=0.4576;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.27;SOR=0.881;VQSLOD=3.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,196:196:99:6048,584,0
chr1	43680839	rs34721748	T	TG	3672.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530e-01;DB;DP=39;ExcessHet=1.5490;FS=1.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.98;ReadPosRankSum=-7.770e-01;SOR=1.541;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,25:39:99:0|1:43680839_T_TG:687,0,316:43680839
chr1	43680855	rs4233492	G	A	7445.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.20;SOR=2.810;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,57:57:99:1|1:43680839_T_TG:2117,171,0:43680839
chr1	43681184	rs612626	C	T	3171.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.04;SOR=3.083;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1361,111,0
chr1	43684804	rs1152769	C	T	1183.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=5.283;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:378,27,0
chr1	43688077	rs11210815	A	C	411.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=0.253;SOR=2.049;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:130,0,150
chr1	43688743	rs11585059	G	A	1030.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=-5.430e-01;SOR=0.582;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:346,0,169
chr1	43692983	rs1152768	A	T	200.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=1.01;SOR=0.569;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:104,0,136
chr1	43697968	rs3120045	G	A	447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.400e-02;DB;DP=42;ExcessHet=3.0103;FS=1.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-1.201e+00;SOR=0.603;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:456,0,627
chr1	43699813	rs3820588	A	G	658.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=0.712;SOR=0.307;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:90:90,0,389
chr1	43699935	rs2477561	C	T	9618.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=32.94;SOR=1.896;VQSLOD=5.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3292,322,0
chr1	43700140	rs2483688	A	G	10412.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.204;DB;DP=242;ExcessHet=1.5490;FS=0.596;MQ=59.97;MQRankSum=0.956;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=0.374;SOR=0.614;VQSLOD=2.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,242:242:99:7447,725,0
chr1	43738340	rs10890247	A	C	3424.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=0.751;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1435,135,0
chr1	43748132	rs1198976	A	G	624.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=5.549;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr1	43771016	rs3831248	TA	T	13147.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910e-01;DB;DP=165;ExcessHet=3.9794;FS=1.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=1.79;SOR=0.837;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:84,81:165:99:2337,0,2485
chr1	43771090	rs3120044	G	A	6722.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027e+00;DB;DP=80;ExcessHet=3.9794;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=0.320;SOR=0.483;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1155,0,1047
chr1	43773033	rs2275180	A	G	11343.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.21;DB;DP=129;ExcessHet=3.0103;FS=9.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=0.583;SOR=0.431;VQSLOD=19.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,71:129:99:2263,0,1592
chr1	43774292	rs1467808	C	T	706.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=8;ExcessHet=3.0103;FS=3.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.12;ReadPosRankSum=0.144;SOR=2.200;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:78:148,0,78
chr1	43774437	rs1467809	G	A	2154.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010e-01;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=0.241;SOR=0.659;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,17:40:99:484,0,646
chr1	43774495	rs2282225	G	C	2300.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661e+00;DB;DP=59;ExcessHet=6.9897;FS=4.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-8.400e-02;SOR=1.067;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,26:59:99:631,0,937
chr1	43774878	rs2282226	C	T	432.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.037e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-5.430e-01;SOR=0.720;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:441,0,703
chr1	43775477	rs6694318	C	G	788.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=0.926;SOR=1.002;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:62:232,0,62
chr1	43777852	rs1999595	C	T	12704.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DB;DP=125;ExcessHet=3.0103;FS=0.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.29;ReadPosRankSum=0.594;SOR=0.590;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4692,375,0
chr1	43779564	rs3120276	T	C	13422.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-02;DB;DP=188;ExcessHet=3.0103;FS=3.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=-8.170e-01;SOR=1.098;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,98:188:99:2477,0,2245
chr1	43779869	rs2991990	T	G	8096.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DB;DP=63;ExcessHet=3.0103;FS=4.343;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.90;ReadPosRankSum=-1.327e+00;SOR=0.673;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,42:63:99:1137,0,515
chr1	43782846	rs1198982	G	A	4486.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.773e+00;DB;DP=30;ExcessHet=3.0103;FS=1.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=-6.910e-01;SOR=0.479;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:494,0,475
chr1	43784956	rs1199039	A	G	2731.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=117;ExcessHet=3.9794;FS=1.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=1.09;SOR=0.558;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,52:117:99:1386,0,1704
chr1	43786715	rs71654284	A	C	197.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.27;ReadPosRankSum=1.98;SOR=0.283;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:18:0|1:43786715_A_C:71,0,18:43786715
chr1	43786721	rs77603098	A	C	230.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.76;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:18:0|1:43786715_A_C:71,0,18:43786715
chr1	43787437	rs11210834	A	G	1851.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.560e-01;DB;DP=34;ExcessHet=6.9897;FS=8.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=1.37;SOR=2.346;VQSLOD=18.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:675,0,375
chr1	43812075	rs1760670	G	A	547.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.600e-01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.293;SOR=0.826;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:556,0,502
chr1	43814864	rs839995	T	C	1466.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.13;DB;DP=128;ExcessHet=3.0103;FS=1.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-5.250e-01;SOR=0.552;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,50:128:99:1475,0,2031
chr1	43817797	rs112801644	C	T	237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=17;ExcessHet=3.0103;FS=6.422;MQ=60.00;MQRankSum=0.00;QD=13.96;ReadPosRankSum=0.684;SOR=2.833;VQSLOD=16.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:246,0,294
chr1	43825644	rs839763	T	C	1499.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=61;ExcessHet=3.9794;FS=21.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.499;SOR=1.130;VQSLOD=12.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,19:61:99:483,0,1278
chr1	43826312	rs710251	C	A	21855.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.447e+00;DB;DP=294;ExcessHet=3.0103;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=1.42;SOR=0.717;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,294:294:99:8991,880,0
chr1	43850473	rs11172	A	G	217.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=19;ExcessHet=3.0103;FS=2.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-1.946e+00;SOR=1.751;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:226,0,368
chr1	43855546	rs839752	A	G	1266.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=99;ExcessHet=3.0103;FS=1.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.971e+00;SOR=0.933;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,48:99:99:1275,0,1176
chr1	43855578	rs839753	G	C	7053.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=86;ExcessHet=3.0103;FS=2.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.61;ReadPosRankSum=0.963;SOR=0.554;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2718,257,0
chr1	43869235	rs710249	G	C	2659.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.130e-01;DB;DP=78;ExcessHet=3.9794;FS=1.805;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=2.49;SOR=0.573;VQSLOD=5.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,37:78:99:896,0,1101
chr1	43872067	rs839769	C	T	2393.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e-01;DB;DP=88;ExcessHet=3.9794;FS=0.517;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-4.570e-01;SOR=0.651;VQSLOD=6.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,39:88:99:1041,0,1322
chr1	43881941	rs1999674	A	G	1243.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.10;ReadPosRankSum=-2.950e-01;SOR=0.422;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:466,33,0
chr1	43886321	rs2782642	A	G	1808.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.30;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=-9.600e-02;SOR=0.690;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:798,0,511
chr1	43886494	rs2782643	C	T	7842.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=281;ExcessHet=3.9794;FS=0.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.322;SOR=0.613;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,136:281:99:3449,0,3539
chr1	43887146	rs2782644	G	A	921.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=-3.380e-01;SOR=0.859;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:576,0,265
chr1	43888602	rs2782645	G	A	1094.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-01;DB;DP=36;ExcessHet=3.9794;FS=1.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=0.301;SOR=0.952;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:539,0,617
chr1	43892189	rs2782646	G	A	11160.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=467;ExcessHet=3.9794;FS=0.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=0.752;SOR=0.751;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:251,216:467:99:5072,0,6003
chr1	43901011	rs2039531	A	C	2344.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.60;DB;DP=73;ExcessHet=3.9794;FS=0.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.628;SOR=0.572;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1080,0,927
chr1	43903589	rs2782648	G	T	2692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.710e-01;DB;DP=68;ExcessHet=3.9794;FS=3.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=1.38;SOR=0.440;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,26:68:99:719,0,1261
chr1	43903695	rs2842182	A	G	1443.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.73;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=0.764;SOR=1.958;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:377,27,0
chr1	43904316	rs2842184	A	G	952.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.21;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=1.44;SOR=0.569;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:403,0,574
chr1	43905819	rs2782649	T	C	2092.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773e+00;DB;DP=69;ExcessHet=3.9794;FS=2.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=1.54;SOR=0.501;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,31:69:99:726,0,1082
chr1	43906896	rs2027130	A	G	2678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=82;ExcessHet=3.9794;FS=1.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=1.21;SOR=0.560;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,38:82:99:990,0,1122
chr1	43907092	rs12407785	G	A	3290.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DB;DP=131;ExcessHet=3.9794;FS=4.077;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.528;SOR=0.931;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,65:131:99:1645,0,1673
chr1	43909265	rs2255632	T	C	6957.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.26;DB;DP=222;ExcessHet=3.9794;FS=2.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.256;SOR=0.868;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,104:222:99:2796,0,3007
chr1	43912590	rs2782650	A	G	2085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041e+00;DB;DP=64;ExcessHet=3.9794;FS=5.234;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.506;SOR=0.394;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,44:64:99:1100,0,479
chr1	43916642	rs6954	T	C	7567.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=0.718;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3598,351,0
chr1	43917409	rs2251804	T	C	2475.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.09;DB;DP=70;ExcessHet=3.9794;FS=3.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.451;SOR=0.479;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,27:70:99:822,0,1259
chr1	43917637	rs2251802	G	A	3859.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DB;DP=159;ExcessHet=3.9794;FS=1.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.401;SOR=0.597;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,72:159:99:1670,0,2278
chr1	43918709	.	C	T	2351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295e+00;DP=212;ExcessHet=3.0103;FS=3.084;MQ=60.00;MQRankSum=0.00;QD=11.09;ReadPosRankSum=-1.400e+00;SOR=0.498;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,104:212:99:2360,0,2638
chr1	43919413	rs6692611	A	G	3710.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.538e+00;DB;DP=43;ExcessHet=3.0103;FS=7.695;MQ=60.00;MQRankSum=0.00;QD=23.79;ReadPosRankSum=0.482;SOR=0.245;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1288,129,0
chr1	43919486	rs182798940	C	T	204.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.57;ReadPosRankSum=-6.320e-01;SOR=1.402;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:91:213,0,91
chr1	43998397	rs11350891	GT	G	4091.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.00;SOR=2.129;VQSLOD=5.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1527,147,0
chr1	44035472	rs943513	G	A	3032.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.580e-01;DB;DP=59;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=1.02;SOR=0.762;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1959,176,0
chr1	44054994	rs58097944	G	A	72.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=0.693;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	44057950	rs573350	T	C	1554.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.16;DB;DP=14;ExcessHet=3.0103;FS=5.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.39;ReadPosRankSum=0.123;SOR=2.303;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:574,42,0
chr1	44063250	rs562249	T	C	1197.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.48;SOR=2.165;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:470,39,0
chr1	44070032	rs530373	A	G	425.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=-1.122e+00;SOR=2.448;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	44070691	rs17371903	A	G	2907.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.427e+00;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=1.63;SOR=0.787;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1870,159,0
chr1	44071221	rs631248	G	A	8559.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070e+00;DB;DP=167;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=1.17;SOR=0.710;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,82:167:99:1869,0,2314
chr1	44071796	rs618369	G	T	382.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=0.00;SOR=1.148;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:253,24,0
chr1	44071853	rs512579	T	C	1466.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=-4.140e-01;SOR=1.802;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:640,51,0
chr1	44072420	rs539096	A	G	7186.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=71;ExcessHet=3.0103;FS=1.300;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=0.474;SOR=0.850;VQSLOD=6.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2411,213,0
chr1	44075227	rs517622	T	C	3836.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.115e+00;DB;DP=44;ExcessHet=3.0103;FS=8.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.01;ReadPosRankSum=-1.820e-01;SOR=0.081;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1413,132,0
chr1	44078384	rs499257	T	C	3667.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;DB;DP=58;ExcessHet=3.9794;FS=1.395;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=0.313;SOR=0.566;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1874,174,0
chr1	44078602	rs3791151	C	A	1679.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.740e-01;DB;DP=33;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=-1.827e+00;SOR=0.859;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1107,99,0
chr1	44079411	rs603542	T	C	8324.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.844e+00;DB;DP=140;ExcessHet=3.9794;FS=2.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=0.096;SOR=0.563;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,139:140:99:4401,378,0
chr1	44083015	rs653953	G	A	896.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.037e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=-3.130e-01;SOR=1.236;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:466,33,0
chr1	44083110	rs571862	C	T	6431.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.399e+00;DB;DP=72;ExcessHet=3.0103;FS=4.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.84;ReadPosRankSum=-5.870e-01;SOR=0.309;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2567,215,0
chr1	44083507	rs641365	T	C	11136.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=177;ExcessHet=3.0103;FS=1.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=-2.012e+00;SOR=0.832;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5150,531,0
chr1	44083519	rs641351	G	A	10227.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.700e-02;DB;DP=157;ExcessHet=3.0103;FS=1.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=-8.920e-01;SOR=0.863;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4747,470,0
chr1	44084739	rs1143701	C	T	10867.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.180e-01;DB;DP=164;ExcessHet=3.0103;FS=0.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=-1.194e+00;SOR=0.592;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,164:164:99:4813,491,0
chr1	44085564	rs187496303	C	A	787.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.986e+00;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.881;QD=11.41;ReadPosRankSum=-2.740e-01;SOR=0.829;VQSLOD=0.699;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,29:69:99:796,0,1504
chr1	44086080	rs568639	T	C	7524.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=89;ExcessHet=3.0103;FS=2.563;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=-1.056e+00;SOR=0.528;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2781,267,0
chr1	44086831	rs1143702	C	T	13646.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.379;DB;DP=245;ExcessHet=3.9794;FS=1.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=0.236;SOR=0.614;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,242:245:99:7247,642,0
chr1	44087012	.	C	T	483.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270e+00;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.59;ReadPosRankSum=0.099;SOR=0.527;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:492,0,640
chr1	44087496	rs673485	C	T	11379.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.71;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.29;ReadPosRankSum=1.30;SOR=0.701;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4986,465,0
chr1	44121557	rs2274465	C	G	912.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.521e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=1.07;SOR=0.735;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:475,36,0
chr1	44133299	rs618678	C	T	375.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.893;SOR=0.223;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:325,0,119
chr1	44137257	rs586339	C	A	3603.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DB;DP=70;ExcessHet=6.9897;FS=0.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-1.336e+00;SOR=0.753;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,33:70:99:1018,0,977
chr1	44154479	rs3791035	G	C	2023.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384e+00;DB;DP=66;ExcessHet=3.9794;FS=1.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.551;SOR=0.569;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,45:66:99:1152,0,576
chr1	44158129	rs2270972	C	G	457.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:182,0,149
chr1	44160186	rs35419389	CA	C	312.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.50;ReadPosRankSum=1.46;SOR=0.941;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:14:64:67,0,64
chr1	44169065	.	AT	A	86.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.76;ReadPosRankSum=0.728;SOR=0.223;VQSLOD=5.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:20:20,0,152
chr1	44280381	rs37468	A	T	1873.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.245;SOR=0.634;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:503,0,529
chr1	44290530	rs37458	A	G	1126.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=0.105;SOR=0.715;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,24:67:99:453,0,1048
chr1	44303786	rs10691786	C	CAAAAAAAA	1477.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DB;DP=33;ExcessHet=3.9794;FS=2.138;MQ=57.30;MQRankSum=-1.644e+00;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=-9.900e-02;SOR=0.462;VQSLOD=1.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,7:33:99:437,0,1137
chr1	44323736	rs2906465	T	C	1925.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=0.471;SOR=0.653;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:511,0,520
chr1	44345292	rs2527776	G	A	347.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:73,0,35
chr1	44363710	rs61770289	T	C	1135.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.90;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=1.28;SOR=0.525;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:377,0,280
chr1	44365457	rs783304	A	G	2686.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=90;ExcessHet=3.9794;FS=5.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.416;SOR=0.409;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,47:90:99:1326,0,1226
chr1	44365529	rs783303	G	A	3640.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.800e-02;DB;DP=44;ExcessHet=3.0103;FS=9.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.94;ReadPosRankSum=0.00;SOR=2.439;VQSLOD=17.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1493,131,0
chr1	44386305	rs3120802	C	T	2323.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.099e+00;DB;DP=25;ExcessHet=3.0103;FS=8.292;MQ=59.89;MQRankSum=0.650;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=-1.589e+00;SOR=1.609;VQSLOD=0.236;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:938,75,0
chr1	44386615	rs3120803	A	G	8586.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=88;ExcessHet=3.0103;FS=8.614;MQ=59.95;MQRankSum=-1.101e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=-6.200e-01;SOR=0.332;VQSLOD=0.384;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2821,263,0
chr1	44395786	rs2108202	C	T	4181.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940e-01;DB;DP=76;ExcessHet=6.9897;FS=2.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.229;SOR=0.847;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,52:76:99:1540,0,595
chr1	44401384	rs2242637	A	G	9289.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=118;ExcessHet=3.0103;FS=1.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.65;ReadPosRankSum=0.00;SOR=0.846;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,116:118:99:3807,305,0
chr1	44402565	rs12127737	G	A	635.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=1.07;SOR=0.798;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:227,0,301
chr1	44415415	rs2240447	C	T	11809.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=277;ExcessHet=6.9897;FS=1.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.115;SOR=0.628;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,129:277:99:3155,0,3780
chr1	44416090	rs7556565	C	T	232.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,76
chr1	44426025	rs2301993	G	A	2840.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.670e-01;DB;DP=106;ExcessHet=6.9897;FS=1.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=0.350;SOR=0.592;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,35:106:99:815,0,1697
chr1	44426948	rs2906596	G	A	13514.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=154;ExcessHet=3.0103;FS=1.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=0.021;SOR=0.439;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:5015,462,0
chr1	44432500	rs4660759	C	G	5001.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=105;ExcessHet=6.9897;FS=0.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-1.607e+00;SOR=0.640;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,51:105:99:1526,0,1548
chr1	44438396	rs783308	A	C	64.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:72,0,62
chr1	44442521	rs12410334	A	C	4499.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=94;ExcessHet=6.9897;FS=0.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.900;SOR=0.733;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,53:94:99:1522,0,1063
chr1	44442930	rs2428954	A	G	3115.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=93;ExcessHet=3.9794;FS=2.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.475;SOR=0.916;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,39:93:99:1074,0,1551
chr1	44443459	rs2428953	G	A	1597.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-2.680e-01;SOR=0.741;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:728,0,682
chr1	44446634	rs2486006	A	G	432.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.88;ReadPosRankSum=0.189;SOR=1.061;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr1	44446651	rs2486005	T	C	257.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=2.03;SOR=1.022;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:148,0,130
chr1	44450737	rs2231283	C	G	3072.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=0.224;SOR=0.705;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,36:65:99:1114,0,811
chr1	44451114	rs371619921	GA	G	306.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.26;DB;DP=5;ExcessHet=3.9794;FS=4.523;MQ=59.42;MQRankSum=0.00;QD=20.41;ReadPosRankSum=0.431;SOR=2.833;VQSLOD=4.67;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:18:1|1:44451114_GA_G:246,18,0:44451114
chr1	44451124	rs75761202	G	T	819.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.920e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.81;MQRankSum=0.00;QD=24.83;ReadPosRankSum=-5.380e-01;SOR=0.743;VQSLOD=5.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:44451114_GA_G:547,48,0:44451114
chr1	44457215	rs12403025	G	A	928.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=23;ExcessHet=6.9897;FS=7.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-1.474e+00;SOR=1.977;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:319,0,489
chr1	44457305	rs12403036	G	A	2434.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.989e+00;DB;DP=78;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=0.380;SOR=0.731;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,37:78:99:782,0,1146
chr1	44457739	rs11376967	T	TC	5983.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=1.122;VQSLOD=4.51;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1533,123,0
chr1	44459318	rs57838666	CA	C	583.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e-01;DB;DP=24;ExcessHet=6.9897;FS=2.178;MQ=59.97;MQRankSum=0.00;QD=7.79;ReadPosRankSum=0.439;SOR=1.094;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,13:24:99:211,0,149
chr1	44475987	rs2486001	T	C	576.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=1.61;SOR=1.136;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:109,0,179
chr1	44483040	.	AAC	A	461.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.55;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=1.15;SOR=3.098;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:16:64,0,16
chr1	44584337	rs66598105	GTGGC	G	265.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=-5.240e-01;SOR=0.836;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:99:120,0,109
chr1	44594966	rs2485653	G	A	2304.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DB;DP=83;ExcessHet=3.9794;FS=1.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-5.040e-01;SOR=0.546;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1224,0,1083
chr1	44595047	rs11210969	T	A	4803.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=170;ExcessHet=3.9794;FS=1.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-6.450e-01;SOR=0.799;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,76:170:99:1749,0,2250
chr1	44595113	rs2429051	G	C	14981.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=0.768;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,203:203:99:6285,608,0
chr1	44595410	rs2485652	A	G	6078.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=194;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.503;SOR=0.713;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,100:194:99:2897,0,2489
chr1	44595426	rs2429050	G	A	5866.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=189;ExcessHet=3.9794;FS=1.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.11;SOR=0.808;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,95:189:99:2593,0,2391
chr1	44595995	rs35084281	G	GC	1538.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200e-02;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-9.930e-01;SOR=0.672;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,18:40:99:439,0,565
chr1	44679556	rs803369	A	G	7540.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=164;ExcessHet=1.5490;FS=1.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=0.139;SOR=0.618;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,92:164:99:2339,0,1601
chr1	44681113	rs1291169	T	C	143.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.220e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-3.530e-01;SOR=1.179;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:152,0,247
chr1	44684995	rs2799480	T	C	1958.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=64;ExcessHet=3.9794;FS=1.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.551;SOR=0.896;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,45:64:99:1224,0,487
chr1	44750795	rs61771075	C	A	50.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=1.98;SOR=0.223;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,200
chr1	44773839	rs2301767	C	T	511.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.99;ReadPosRankSum=-5.980e-01;SOR=2.584;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,103
chr1	44785686	rs2074536	C	T	465.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:108,0,116
chr1	44788398	rs161721	A	T	3457.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=0.710;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1050,113,0
chr1	44818337	rs1291178	G	T	475.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.840e-01;DB;DP=12;ExcessHet=3.9794;FS=3.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=0.108;SOR=1.863;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,2:12:45:45,0,356
chr1	44820319	rs226067	A	G	2065.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.99;SOR=7.784;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:403,27,0
chr1	44878464	rs12131249	G	A	609.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=30;ExcessHet=3.0103;FS=5.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=0.689;SOR=0.118;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:618,0,370
chr1	44878509	rs11210991	C	G	1402.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=0.810;SOR=0.357;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:385,0,129
chr1	44878549	rs11210992	T	C	934.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=-1.448e+00;SOR=1.329;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,7:8:14:291,14,0
chr1	45088629	rs28453885	G	A	400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=0.788;SOR=0.725;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,5:20:99:133,0,522
chr1	45101478	rs2236219	T	C	604.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=18;ExcessHet=3.9794;FS=6.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-5.170e-01;SOR=2.066;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:313,0,297
chr1	45111360	rs12728857	A	G	397.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.77;SOR=4.804;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:414,30,0
chr1	45121045	rs11211020	T	C	345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198e+00;DB;DP=12;ExcessHet=3.9794;FS=6.923;MQ=60.00;MQRankSum=0.00;QD=13.27;ReadPosRankSum=0.186;SOR=0.058;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:159,0,245
chr1	45166683	rs76132381	C	T	835.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=76;ExcessHet=3.0103;FS=3.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-3.590e-01;SOR=1.061;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:844,0,876
chr1	45205323	rs11211030	A	G	663.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-4.310e-01;SOR=1.609;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:343,30,0
chr1	45205598	rs3820586	T	C	9078.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.557;DB;DP=174;ExcessHet=3.9794;FS=1.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=1.08;SOR=0.674;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5039,520,0
chr1	45215905	rs67742332	T	G	616.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=12;ExcessHet=3.9794;FS=2.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=1.37;SOR=0.307;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:370,36,0
chr1	45216038	rs12566610	C	G	1979.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.50;ReadPosRankSum=-4.420e-01;SOR=0.620;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1141,99,0
chr1	45218895	rs3795713	A	T	3009.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=59;ExcessHet=3.9794;FS=1.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.205;SOR=0.586;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1763,176,0
chr1	45222916	rs16832227	A	G	420.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=0.100;SOR=0.765;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr1	45223901	rs111920953	TATTAGCTG	T	5191.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.17;DB;DP=62;ExcessHet=3.0103;FS=2.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.25;ReadPosRankSum=-8.140e-01;SOR=0.995;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2740,188,0
chr1	45224007	rs3795714	G	T	1765.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;DB;DP=37;ExcessHet=3.9794;FS=1.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=0.559;SOR=0.932;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1138,111,0
chr1	45224757	rs16832228	G	A	1736.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.72;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=0.115;SOR=1.209;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:599,45,0
chr1	45224998	rs4342887	A	C	9585.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=167;ExcessHet=3.9794;FS=0.560;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-2.130e-01;SOR=0.765;VQSLOD=6.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,165:167:99:5023,452,0
chr1	45226084	rs1140279	G	A	9954.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=195;ExcessHet=3.9794;FS=2.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-3.650e-01;SOR=0.537;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,193:195:99:5932,535,0
chr1	45241113	rs11211031	T	C	3461.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=-8.720e-01;SOR=0.982;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1543,129,0
chr1	45241285	rs12120833	C	G	3606.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.360e+00;DB;DP=116;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=-1.255e+00;SOR=0.350;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,115:116:99:3623,304,0
chr1	45244051	rs3838955	T	TG	4645.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.188;DB;DP=64;ExcessHet=3.9794;FS=3.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=0.619;SOR=0.494;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2379,193,0
chr1	45244692	rs10465818	T	C	793.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.36;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=0.424;SOR=1.863;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:300,21,0
chr1	45266832	rs17881698	A	G	3221.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.017;DB;DP=48;ExcessHet=3.9794;FS=1.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=0.133;SOR=0.832;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1575,144,0
chr1	45266875	.	CT	C	145.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=8;ExcessHet=3.9794;FS=1.671;MQ=58.57;MQRankSum=-3.660e-01;POSITIVE_TRAIN_SITE;QD=5.02;ReadPosRankSum=0.619;SOR=1.358;VQSLOD=1.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,2:8:17:17,0,67
chr1	45268356	rs11584440	C	A	610.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.678;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=-6.230e-01;SOR=0.693;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:308,24,0
chr1	45270024	rs11211036	G	C	25965.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=491;ExcessHet=3.9794;FS=0.538;MQ=59.99;MQRankSum=0.862;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.28;SOR=0.612;VQSLOD=2.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,491:491:99:14689,1470,0
chr1	45271097	rs17883049	G	A	11697.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.882e+00;DB;DP=173;ExcessHet=3.9794;FS=1.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=-1.650e-01;SOR=0.591;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,172:173:99:5885,508,0
chr1	45271912	rs17886118	G	A	12925.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.20;DB;DP=228;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.342;SOR=0.705;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,228:228:99:7375,681,0
chr1	45275551	rs11211037	A	C	184.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=1.022;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	45278458	rs72060719	CGTGTGTGTGTGTGTGTGTGT	C	867.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.04;SOR=4.804;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	45285962	.	C	T	592.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010e-01;DP=41;ExcessHet=3.0103;FS=5.348;MQ=60.00;MQRankSum=0.00;QD=14.45;ReadPosRankSum=0.458;SOR=0.200;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:601,0,545
chr1	45288527	rs3795719	C	G	349.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=7;ExcessHet=1.5490;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=0.728;SOR=0.084;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:303,21,0
chr1	45289210	.	C	G	1077.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.96;ReadPosRankSum=-4.150e-01;SOR=0.717;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,41:72:99:1086,0,736
chr1	45289376	rs7514741	T	C	686.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=-7.000e-01;SOR=1.688;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:331,27,0
chr1	45289409	rs7545808	C	G	513.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.20;ReadPosRankSum=-1.368e+00;SOR=2.179;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:291,21,0
chr1	45291908	rs11211040	G	A	10137.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609e+00;DB;DP=178;ExcessHet=3.9794;FS=2.650;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=-1.010e-01;SOR=0.895;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,177:178:99:5588,488,0
chr1	45293518	rs7525308	A	G	12344.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.54;DB;DP=159;ExcessHet=3.0103;FS=2.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.56;ReadPosRankSum=-8.070e-01;SOR=0.929;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5373,477,0
chr1	45293752	rs2295997	T	C	10280.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.855;DB;DP=173;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=0.192;SOR=0.738;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,171:173:99:5542,435,0
chr1	45294156	rs2273940	T	C	6678.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.720e-01;DB;DP=88;ExcessHet=3.0103;FS=5.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=0.443;SOR=0.398;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2631,264,0
chr1	45295911	rs5773854	G	GTA	835.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=0.253;SOR=1.802;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	45296752	rs2295998	C	T	635.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.09;DB;DP=11;ExcessHet=3.9794;FS=2.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.189;SOR=1.302;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:415,33,0
chr1	45297753	rs2295999	A	G	3740.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.290e-01;DB;DP=57;ExcessHet=3.9794;FS=1.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=-1.860e-01;SOR=0.569;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1877,128,0
chr1	45307506	rs3795720	G	A	8925.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.032;DB;DP=126;ExcessHet=3.0103;FS=2.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.74;ReadPosRankSum=-1.389e+00;SOR=0.885;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3633,376,0
chr1	45308409	rs6696675	G	A	2904.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.390e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.685;SOR=0.772;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1098,101,0
chr1	45316904	rs263985	C	T	404.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.41;SOR=1.085;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	45323047	.	CAA	C	64.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.07;ReadPosRankSum=1.38;SOR=0.105;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:73:73,0,73
chr1	45323071	.	C	T	57.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DP=7;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;QD=8.18;ReadPosRankSum=1.07;SOR=0.027;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:66:0|1:45323071_C_T:66,0,331:45323071
chr1	45323072	.	A	G	57.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DP=7;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;QD=8.18;ReadPosRankSum=1.07;SOR=0.027;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:66:0|1:45323071_C_T:66,0,331:45323071
chr1	45323074	.	A	G	54.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;QD=6.78;ReadPosRankSum=1.24;SOR=0.020;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:63:0|1:45323071_C_T:63,0,373:45323071
chr1	45323081	.	T	C	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;QD=6.78;ReadPosRankSum=0.180;SOR=0.020;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:63:0|1:45323071_C_T:63,0,330:45323071
chr1	45323085	.	T	C	51.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DP=10;ExcessHet=3.0103;FS=4.228;MQ=60.00;MQRankSum=0.00;QD=5.13;ReadPosRankSum=0.00;SOR=0.061;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:45323071_C_T:60,0,372:45323071
chr1	45323091	.	G	T	48.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602e+00;DP=11;ExcessHet=3.0103;FS=4.616;MQ=60.00;MQRankSum=0.00;QD=4.39;ReadPosRankSum=-8.750e-01;SOR=0.048;VQSLOD=21.38;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:57:0|1:45323071_C_T:57,0,414:45323071
chr1	45323553	.	C	T	400.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DP=23;ExcessHet=3.0103;FS=4.993;MQ=60.00;MQRankSum=0.00;QD=17.40;ReadPosRankSum=-6.200e-02;SOR=2.093;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:409,0,300
chr1	45340282	rs9988451	C	T	2894.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.330;DB;DP=28;ExcessHet=3.0103;FS=1.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=0.021;SOR=1.075;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1016,84,0
chr1	45362992	rs263978	T	C	5126.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.855;DB;DP=64;ExcessHet=3.0103;FS=0.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=2.45;SOR=0.554;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2071,191,0
chr1	45443766	rs28409260	G	A	177.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=-5.240e-01;SOR=1.179;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	45443894	rs2487367	T	C	1744.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.26;DB;DP=19;ExcessHet=3.9794;FS=1.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.93;ReadPosRankSum=0.611;SOR=1.445;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:774,57,0
chr1	45444038	rs11556200	G	A	6619.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=113;ExcessHet=3.9794;FS=1.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.042;SOR=0.597;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,110:113:99:3251,279,0
chr1	45446459	rs264022	T	C	302.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=1.38;SOR=0.346;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:176,15,0
chr1	45469176	rs12749251	A	T	2520.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=1.765;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2537,233,0
chr1	45470130	rs7528534	T	C	3835.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=2.520;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1173,84,0
chr1	45471362	rs12739545	G	A	1142.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.463e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=1.15;SOR=1.201;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:293,21,0
chr1	45472798	.	TTGTG	T	5591.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.580e-01;DP=30;ExcessHet=3.0103;FS=3.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.67;ReadPosRankSum=-1.194e+00;SOR=0.687;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:30:91:1238,91,0
chr1	45473392	rs12134146	T	C	510.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.790e-01;DB;DP=3;ExcessHet=3.0103;FS=2.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=-6.510e-01;SOR=0.208;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr1	45474008	rs7541207	T	C	5431.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.60;DB;DP=77;ExcessHet=3.9794;FS=0.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=2.16;SOR=0.643;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2414,231,0
chr1	45474750	rs2275599	A	T	2650.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.040e-01;DB;DP=31;ExcessHet=3.0103;FS=1.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.88;ReadPosRankSum=-3.960e-01;SOR=0.954;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:45474750_A_T:1388,93,0:45474750
chr1	45474755	rs2275598	C	G	2735.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.78;ReadPosRankSum=-5.770e-01;SOR=0.788;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:96:1|1:45474750_A_T:1411,96,0:45474750
chr1	45475566	rs6429552	A	G	6877.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=2.941;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2089,153,0
chr1	45476069	rs7533668	C	A	5400.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=1.101;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1318,105,0
chr1	45476489	rs3806405	A	G	9630.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.13;DB;DP=112;ExcessHet=3.0103;FS=1.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=-1.361e+00;SOR=0.589;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,111:112:99:3735,295,0
chr1	45476663	rs2298005	G	A	14603.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.249e+00;DB;DP=215;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=-2.714e+00;SOR=0.671;VQSLOD=22.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,215:215:99:6799,638,0
chr1	45478433	rs12749939	C	T	2160.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.691e+00;DB;DP=19;ExcessHet=3.0103;FS=2.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=0.897;SOR=0.418;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:751,57,0
chr1	45479772	rs11211066	G	T	6194.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.220e-01;DB;DP=115;ExcessHet=3.9794;FS=3.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-7.020e-01;SOR=0.872;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3622,343,0
chr1	45479874	rs6698485	G	T	5629.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.12;SOR=1.934;VQSLOD=19.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1324,114,0
chr1	45480733	rs6429553	C	T	2826.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=0.714;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:94:930,94,0
chr1	45480829	rs13948	T	C	1260.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.231;DB;DP=20;ExcessHet=3.9794;FS=2.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=0.819;SOR=0.542;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:595,60,0
chr1	45481551	rs6429554	A	G	371.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=58.97;POSITIVE_TRAIN_SITE;QD=34.85;SOR=3.056;VQSLOD=4.68;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	45486713	rs112071546	C	CT	32.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.10;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:41:41,0,44
chr1	45502026	rs34704739	CT	C	345.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.29;ReadPosRankSum=-1.282e+00;SOR=2.303;VQSLOD=4.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:17:110,17,0
chr1	45524213	rs3738246	C	T	6108.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.339e+00;DB;DP=72;ExcessHet=3.0103;FS=5.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=0.690;SOR=1.148;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2298,215,0
chr1	45671966	rs4454584	A	G	10682.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.910e-01;DB;DP=176;ExcessHet=3.9794;FS=1.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=1.37;SOR=0.588;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,176:176:99:5835,528,0
chr1	45795900	rs61347720	CA	C	144.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.431;SOR=0.693;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:28:28,0,28
chr1	45796269	rs3219493	G	C	8664.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.52;SOR=1.481;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2851,246,0
chr1	45798555	rs3219487	T	C	14497.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=0.789;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4380,410,0
chr1	45800156	rs3219484	C	T	747.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=68;ExcessHet=3.0103;FS=2.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-3.030e-01;SOR=1.096;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:756,0,909
chr1	45805566	rs3219468	G	C	18709.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=0.724;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,178:178:99:5423,534,0
chr1	45806053	rs3219466	G	A	2130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.011e+00;DB;DP=136;ExcessHet=3.0103;FS=5.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=-2.451e+00;SOR=0.366;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,81:136:99:2139,0,1521
chr1	45810865	rs17853159	G	A	2093.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.363e+00;DB;DP=184;ExcessHet=3.0103;FS=2.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.129;SOR=0.516;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,85:184:99:2102,0,2694
chr1	45864695	rs7532762	C	A	820.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=58.27;MQRankSum=-6.230e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.57;ReadPosRankSum=0.198;SOR=2.303;VQSLOD=0.497;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:132,0,230
chr1	45879276	rs148557217	TTC	T	123.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.62;ReadPosRankSum=0.697;SOR=0.941;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:93:132,0,93
chr1	45879428	rs79044913	G	A	530.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.210e-01;DB;DP=44;ExcessHet=3.0103;FS=4.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=0.939;SOR=0.213;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,22:44:99:539,0,559
chr1	45923668	rs11211113	T	C	69.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=2.303;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	45960835	rs41269111	G	A	660.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e-01;DB;DP=44;ExcessHet=3.0103;FS=2.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=0.106;SOR=1.301;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:669,0,653
chr1	45961955	rs937290	A	G	1901.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960e-01;DB;DP=24;ExcessHet=3.0103;FS=12.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=-2.900e-02;SOR=2.948;VQSLOD=13.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:346,0,365
chr1	45962018	rs41312018	C	A	757.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=53;ExcessHet=3.0103;FS=4.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-4.720e-01;SOR=1.398;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:766,0,690
chr1	45965340	rs7546268	T	C	10208.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=99;ExcessHet=3.0103;FS=5.395;MQ=59.97;MQRankSum=0.952;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=-5.610e-01;SOR=1.146;VQSLOD=0.542;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,46:99:99:1389,0,1392
chr1	45973435	rs3215980	A	AT	1252.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DB;DP=10;ExcessHet=3.0103;FS=4.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.32;ReadPosRankSum=0.303;SOR=3.070;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:157,0,157
chr1	45973835	rs75126764	A	G	1197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.595e+00;DB;DP=89;ExcessHet=3.0103;FS=2.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-2.100e-02;SOR=0.439;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,50:89:99:1206,0,1066
chr1	45975088	rs56934185	G	GTT	1049.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=30.88;ReadPosRankSum=-1.242e+00;SOR=3.675;VQSLOD=3.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:140,0,107
chr1	46027355	rs512083	T	C	3328.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=82;ExcessHet=6.9897;FS=4.392;MQ=60.00;MQRankSum=0.00;QD=15.85;ReadPosRankSum=0.558;SOR=1.007;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1050,0,1082
chr1	46032153	rs118081582	C	T	258.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DB;DP=33;ExcessHet=3.0103;FS=1.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=0.134;SOR=1.038;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,11:33:99:267,0,536
chr1	46034474	rs41269115	G	C	415.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=-3.970e-01;SOR=0.654;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:424,0,158
chr1	46035470	rs3748645	G	A	1053.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601e+00;DB;DP=73;ExcessHet=3.0103;FS=1.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-5.630e-01;SOR=0.936;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,36:73:99:1062,0,1101
chr1	46049849	rs28365868	G	C	2212.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=160;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-4.350e-01;SOR=0.721;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,89:160:99:2221,0,1626
chr1	46054486	rs2991978	A	G	372.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.83;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:76,0,33
chr1	46065875	rs138281397	A	G	340.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=58.73;MQRankSum=1.31;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=-5.740e-01;SOR=1.112;VQSLOD=0.486;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:349,0,187
chr1	46065998	rs3014211	T	C	9180.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=30.40;SOR=1.044;VQSLOD=4.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:2955,316,0
chr1	46066290	rs141068036	T	G	141.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=3.258;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr1	46071840	rs79767493	C	G	251.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.461;SOR=0.293;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:260,0,249
chr1	46072770	rs80348678	A	G	115.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:124,0,29
chr1	46073597	rs76379164	A	G	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.59;ReadPosRankSum=0.982;SOR=0.779;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,20:58:99:507,0,882
chr1	46080147	rs117483576	C	T	1237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=76;ExcessHet=3.0103;FS=0.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=-1.910e-01;SOR=0.534;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,46:76:99:1246,0,639
chr1	46080220	rs10718022	GT	G	1096.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030e-01;DB;DP=34;ExcessHet=6.9897;FS=8.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-5.490e-01;SOR=0.155;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,24:34:99:631,0,203
chr1	46080300	rs3014248	A	T	689.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=9;ExcessHet=3.9794;FS=3.384;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=0.282;SOR=1.565;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,8:9:17:328,17,0
chr1	46080947	rs1972410	A	C	4115.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.740e-01;DB;DP=99;ExcessHet=6.9897;FS=2.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.368;SOR=0.844;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1171,0,1172
chr1	46081731	rs77373836	A	G	79.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:88:88,0,179
chr1	46081940	rs2356581	T	A	6668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.18;SOR=0.777;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1888,184,0
chr1	46081960	rs2253862	C	T	3129.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020e-01;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.098;SOR=0.689;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,26:58:99:684,0,801
chr1	46082330	rs41272133	C	T	1985.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234e+00;DB;DP=166;ExcessHet=3.0103;FS=3.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.134;SOR=0.969;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,82:166:99:1994,0,2194
chr1	46082431	rs2991988	C	A	5321.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.853e+00;DB;DP=181;ExcessHet=6.9897;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-1.072e+00;SOR=0.622;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,83:181:99:1944,0,2533
chr1	46085879	rs2275086	C	G	1550.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=38;ExcessHet=6.9897;FS=6.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.956;SOR=1.413;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,12:38:99:293,0,823
chr1	46086077	rs3014246	C	T	5107.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420e+00;DB;DP=127;ExcessHet=6.9897;FS=1.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-8.140e-01;SOR=0.597;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,63:127:99:1608,0,1666
chr1	46086288	rs79859939	C	T	949.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773e+00;DB;DP=73;ExcessHet=3.0103;FS=12.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=1.89;SOR=0.966;VQSLOD=16.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,33:73:99:958,0,1204
chr1	46086329	rs11590549	C	T	2649.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.87;DB;DP=86;ExcessHet=3.9794;FS=1.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-3.300e-02;SOR=0.575;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,36:86:99:1044,0,1351
chr1	46086766	rs17410855	C	T	1049.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=75;ExcessHet=3.0103;FS=1.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.846;SOR=1.022;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,41:75:99:1058,0,895
chr1	46086913	rs3014245	C	T	1534.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DB;DP=29;ExcessHet=6.9897;FS=7.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.980;SOR=0.275;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:424,0,494
chr1	46087879	rs3014241	A	G	4316.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=86;ExcessHet=6.9897;FS=1.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-3.670e-01;SOR=0.589;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1189,0,1266
chr1	46088076	rs74575174	G	C	1574.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733e+00;DB;DP=108;ExcessHet=3.0103;FS=7.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-9.300e-02;SOR=1.270;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,61:108:99:1583,0,1251
chr1	46089225	rs3014240	C	G	8317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=176;ExcessHet=6.9897;FS=6.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-3.870e-01;SOR=0.412;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,94:176:99:2706,0,2154
chr1	46094027	rs1250	A	G	3530.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=74;ExcessHet=3.9794;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-4.900e-02;SOR=0.538;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2333,222,0
chr1	46094236	rs4391704	A	G	618.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.08;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=1.15;SOR=4.174;VQSLOD=-1.613e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr1	46095143	rs10159068	C	A	488.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.0103;FS=3.328;MQ=60.00;MQRankSum=0.00;QD=28.73;ReadPosRankSum=0.189;SOR=2.235;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:306,24,0
chr1	46095272	rs1135812	T	C	3296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DB;DP=92;ExcessHet=6.9897;FS=0.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.878;SOR=0.728;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,38:92:99:906,0,1259
chr1	46095532	rs72417938	GGCTCTTCACAGTTGAGAGAGGAAGA	G	106.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.18;ReadPosRankSum=-1.718e+00;SOR=0.495;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:115,0,1063
chr1	46095976	rs6703748	G	A	950.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-3.630e-01;SOR=0.495;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:260,0,175
chr1	46096286	rs76002166	A	C	1301.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=83;ExcessHet=3.0103;FS=0.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-9.030e-01;SOR=0.841;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,50:83:99:1310,0,755
chr1	46096402	rs10708598	AT	A	1735.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-2.120e-01;SOR=0.745;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1085,105,0
chr1	46096442	rs10708597	CA	C	2881.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=1.845;VQSLOD=5.38;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,26:26:78:907,78,0
chr1	46107868	rs12091503	T	C	268.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.88;ReadPosRankSum=-1.036e+00;SOR=1.609;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr1	46120632	rs74577857	C	T	172.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297e+00;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=1.25;SOR=0.120;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:181,0,220
chr1	46124527	rs10890337	C	T	728.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=0.825;SOR=0.465;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr1	46124558	rs10789468	A	G	1430.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.14;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.80;ReadPosRankSum=-4.600e-01;SOR=1.101;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:482,33,0
chr1	46124663	rs6671802	A	G	6346.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.887e+00;DB;DP=84;ExcessHet=3.0103;FS=1.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=2.28;SOR=0.549;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2599,252,0
chr1	46157087	rs10890342	C	T	352.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-7.070e-01;SOR=0.874;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:57:113,0,57
chr1	46159001	rs56215132	G	A	1468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=-8.500e-01;SOR=0.665;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,56:88:99:1477,0,716
chr1	46159244	rs56220330	A	G	1127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=98;ExcessHet=3.0103;FS=1.635;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=-2.054e+00;SOR=0.892;VQSLOD=4.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,42:98:99:1136,0,1465
chr1	46159993	rs114234460	T	C	139.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:96:148,0,96
chr1	46160260	rs6658700	C	T	2234.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.699e+00;DB;DP=43;ExcessHet=6.9897;FS=4.095;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=1.26;SOR=0.436;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,22:43:99:537,0,646
chr1	46165875	rs5773892	G	GA	512.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.484;DB;DP=8;ExcessHet=3.9794;FS=2.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=0.652;SOR=1.863;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:226,24,0
chr1	46166090	rs10890344	C	T	176.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=-9.670e-01;SOR=0.368;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	46166861	rs4564187	G	C	2669.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260e-01;DB;DP=52;ExcessHet=3.9794;FS=1.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=1.30;SOR=0.728;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1419,154,0
chr1	46166950	rs117354665	G	T	657.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456e+00;DB;DP=36;ExcessHet=3.0103;FS=3.282;MQ=60.00;MQRankSum=0.00;QD=18.26;ReadPosRankSum=0.347;SOR=0.994;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,27:36:99:0|1:46166950_G_T:666,0,242:46166950
chr1	46166956	rs139641704	C	CT	584.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.97;ReadPosRankSum=0.702;SOR=0.627;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,4:30:20:1|0:46166950_G_T:20,0,975:46166950
chr1	46193146	rs200134370	T	TTCCC	492.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.13;ReadPosRankSum=0.524;SOR=2.303;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:4:118,0,4
chr1	46193589	.	A	T	44.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e-01;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.94;ReadPosRankSum=-8.120e-01;SOR=0.132;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:53:53,0,254
chr1	46195211	rs139068713	TAAC	T	2243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=37;ExcessHet=6.9897;FS=2.147;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=0.228;SOR=0.469;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,19:37:99:703,0,830
chr1	46195375	rs28375469	T	C	4097.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=92;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-2.880e-01;SOR=0.683;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,40:92:99:1048,0,1169
chr1	46206475	rs77142073	C	G	64.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,108
chr1	46206540	rs28507722	A	G	654.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=12;ExcessHet=6.9897;FS=4.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.547;SOR=0.176;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:108,0,219
chr1	46290311	rs10561161	GTA	G	3685.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=41;ExcessHet=3.9794;FS=0.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=0.039;SOR=0.593;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,19:41:99:702,0,852
chr1	46347910	rs6665193	G	A	2561.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.00;SOR=2.173;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:623,60,0
chr1	46348229	rs11211217	C	G	1406.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.003e+00;DB;DP=18;ExcessHet=3.9794;FS=1.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=-4.860e-01;SOR=0.512;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:364,0,216
chr1	46379518	rs4256763	A	G	10267.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=0.871;VQSLOD=18.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2880,300,0
chr1	46382852	rs6687301	T	C	1071.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.21;ReadPosRankSum=0.409;SOR=0.963;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:149,0,28
chr1	46424964	rs4460582	G	A	6021.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=32.20;SOR=1.358;VQSLOD=4.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1952,186,0
chr1	46468317	rs79420827	G	C	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:68:141,0,68
chr1	46472153	rs6429592	G	A	2916.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.70;SOR=7.112;VQSLOD=23.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:737,54,0
chr1	46473802	rs3922887	A	G	468.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.68;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,71
chr1	46473902	rs3922886	A	T	2626.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-02;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=1.01;SOR=0.693;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:424,0,274
chr1	46476587	rs11211247	T	G	8443.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=0.970;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3030,299,0
chr1	46476746	rs35155395	TG	T	1040.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=1.86;SOR=1.455;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:206,0,206
chr1	46485075	rs7532204	C	G	73.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:81,0,34
chr1	46485562	rs946528	C	T	359.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.21;SOR=0.495;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:166,0,192
chr1	46487560	rs946524	A	G	4084.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.561e+00;DB;DP=87;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=0.693;SOR=0.715;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,46:87:99:1235,0,1142
chr1	46489051	rs2275425	A	G	330.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.662e+00;DB;DP=19;ExcessHet=3.0103;FS=5.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-1.320e-01;SOR=0.078;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:339,0,185
chr1	46491635	rs785478	C	T	1181.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.771e+00;DB;DP=43;ExcessHet=3.9794;FS=13.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.389;SOR=0.100;VQSLOD=15.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:565,0,735
chr1	46496709	rs925524	A	G	2674.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.306e+00;DB;DP=55;ExcessHet=6.9897;FS=7.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-5.650e-01;SOR=0.907;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,29:55:99:767,0,644
chr1	46498375	rs1622208	A	G	3173.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;DB;DP=80;ExcessHet=6.9897;FS=1.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-8.590e-01;SOR=0.601;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,45:80:99:1208,0,817
chr1	46499207	rs12124649	A	T	179.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=-1.026e+00;SOR=1.179;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:95:188,0,95
chr1	46511487	rs2297883	G	C	1005.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=-3.170e-01;SOR=0.361;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:213,0,187
chr1	46521517	rs785468	G	A	2558.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020e-01;DB;DP=72;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-2.860e-01;SOR=0.699;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,42:72:99:956,0,698
chr1	46521559	rs785467	A	T	2499.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=64;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.985;SOR=0.667;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,35:64:99:982,0,737
chr1	46521792	rs785466	G	A	308.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=-9.670e-01;SOR=0.446;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:117,0,28
chr1	46531898	rs75775922	A	G	288.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.703;SOR=0.846;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:297,0,463
chr1	46531987	rs76597546	G	T	130.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-9.360e-01;SOR=0.527;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:139,0,189
chr1	46597235	rs75653845	C	T	108.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.43;SOR=2.833;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	46598273	rs1707303	A	C	8058.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DB;DP=174;ExcessHet=6.9897;FS=1.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-1.220e-01;SOR=0.592;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,79:174:99:1890,0,2327
chr1	46641679	rs148064995	G	A	87.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=0.984;SOR=0.836;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:96:96,0,275
chr1	46646725	rs2234265	G	A	1027.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715e+00;DB;DP=86;ExcessHet=3.0103;FS=3.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=1.60;SOR=0.414;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1036,0,1266
chr1	46655158	rs6659553	T	C	5791.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.660e-01;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=0.587;SOR=0.755;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2181,219,0
chr1	46713966	rs17102080	A	G	59.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-3.410e-01;SOR=0.307;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,148
chr1	46806959	rs11579255	C	T	162.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=-5.240e-01;SOR=0.693;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:28:28,0,144
chr1	46810530	rs3737744	A	G	4084.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.48;DB;DP=128;ExcessHet=3.9794;FS=3.263;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-2.680e-01;SOR=0.517;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,60:128:99:1565,0,1920
chr1	46818502	rs41294480	A	G	311.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.442e+00;DB;DP=18;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=-1.644e+00;SOR=0.120;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:320,0,196
chr1	46827214	rs324414	A	C	3689.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.19;SOR=4.317;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1003,81,0
chr1	46870761	rs324420	C	A	2946.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.310e-01;DB;DP=160;ExcessHet=3.9794;FS=2.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=-1.281e+00;SOR=0.859;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,55:160:99:1222,0,2765
chr1	46871986	rs324419	T	C	20462.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=1.138;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,239:239:99:7203,716,0
chr1	46874383	rs2295633	A	G	1510.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=0.070;SOR=1.651;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:356,0,372
chr1	46875067	rs11576941	G	T	513.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=0.923;SOR=1.276;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:69:140,0,69
chr1	46972605	rs12127101	T	A	4032.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.17;DB;DP=136;ExcessHet=3.9794;FS=2.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.214;SOR=0.942;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,63:136:99:1955,0,1988
chr1	46972958	rs35270239	A	G	870.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-8.100e-02;SOR=0.368;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:383,0,698
chr1	46975877	rs6698196	T	C	99.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:107,0,27
chr1	46976530	rs12045200	C	G	774.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.041e+00;DB;DP=64;ExcessHet=3.0103;FS=0.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-1.283e+00;SOR=0.973;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:783,0,871
chr1	46976717	rs12045245	C	T	2380.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763e+00;DB;DP=213;ExcessHet=3.0103;FS=4.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=2.29;SOR=0.746;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,108:213:99:2389,0,2450
chr1	46976837	rs1886116	C	T	8325.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DB;DP=222;ExcessHet=6.9897;FS=4.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-1.462e+00;SOR=0.975;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,112:222:99:2577,0,2411
chr1	47013180	rs10890404	A	G	10505.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=180;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=-2.180e-01;SOR=0.733;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,77:180:99:1793,0,2752
chr1	47013364	rs1258041	T	C	6803.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.55;SOR=2.033;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2199,210,0
chr1	47014821	.	A	AAAAAG	5817.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DP=60;ExcessHet=3.0103;FS=5.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=-1.687e+00;SOR=1.196;VQSLOD=6.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,27:60:99:1094,0,1896
chr1	47016512	rs1258044	G	A	56.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-1.282e+00;SOR=0.446;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,100
chr1	47046465	rs60914701	AC	A	306.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e-01;DB;DP=11;ExcessHet=3.9794;FS=3.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.127;SOR=0.126;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:181,0,145
chr1	47059934	rs1258021	T	C	7834.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=0.926;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2164,216,0
chr1	47060078	rs7556307	G	A	436.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-3.030e-01;SOR=0.765;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,222
chr1	47075932	rs3818323	C	T	1478.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299e+00;DB;DP=40;ExcessHet=3.9794;FS=1.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=0.965;SOR=0.963;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,27:40:99:798,0,340
chr1	47078330	rs112172528	G	GA	56.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.45;ReadPosRankSum=1.83;SOR=1.329;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:17:65,0,17
chr1	47078637	rs4660947	T	C	14639.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593e+00;DB;DP=472;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-2.810e-01;SOR=0.722;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:276,196:472:99:4662,0,7044
chr1	47080665	rs11211328	C	T	1104.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=43;ExcessHet=3.9794;FS=2.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-6.490e-01;SOR=0.439;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,30:43:99:741,0,275
chr1	47080679	rs6671527	G	A	1581.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.020e-01;DB;DP=38;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.144;SOR=0.699;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,25:38:99:683,0,296
chr1	47080741	rs12029680	C	T	1177.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=25;ExcessHet=6.9897;FS=3.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.353;SOR=1.250;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:473,0,214
chr1	47099235	rs4660950	A	C	281.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=0.674;SOR=1.445;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	47099346	rs723333	C	A	2017.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e-01;DB;DP=29;ExcessHet=3.9794;FS=2.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.866;SOR=1.098;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:943,87,0
chr1	47099721	rs723334	T	C	427.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=1.72;SOR=0.446;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:137,12,0
chr1	47108828	rs736188	T	C	1809.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=31;ExcessHet=3.9794;FS=1.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=0.300;SOR=0.964;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1042,93,0
chr1	47109089	rs1745377	A	G	2227.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.950e-01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=-3.940e-01;SOR=0.704;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1262,105,0
chr1	47109251	rs1273237	A	G	107.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=2.833;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	47110668	rs1258054	G	C	1383.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.699e+00;DB;DP=14;ExcessHet=3.9794;FS=8.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.22;ReadPosRankSum=0.129;SOR=0.161;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:482,42,0
chr1	47110712	rs1258053	C	T	2015.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.500e-02;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.905;SOR=0.775;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:831,75,0
chr1	47110766	rs3215990	G	GC	3757.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=39;ExcessHet=3.9794;FS=0.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=0.775;SOR=0.754;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1459,117,0
chr1	47133811	rs11211337	T	C	2788.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=27.34;SOR=0.859;VQSLOD=2.23;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1221,139,0
chr1	47138444	rs616249	C	T	2985.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.48;SOR=3.967;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:607,51,0
chr1	47153855	rs11211340	T	A	900.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=0.992;SOR=1.179;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:422,33,0
chr1	47181920	.	CAAAA	C,CAA	859.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.34;DP=18;ExcessHet=3.0103;FS=3.255;MQ=59.10;MQRankSum=-1.770e-01;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=0.633;SOR=2.221;VQSLOD=0.503;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,5:18:99:363,114,247,127,0,102
chr1	47264495	rs632133	C	A	145.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.84;SOR=3.258;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	47276728	rs2297812	G	C	5039.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=113;ExcessHet=6.9897;FS=7.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.358;SOR=1.066;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,60:113:99:1909,0,1527
chr1	47278471	rs12410657	G	C	326.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.75;ReadPosRankSum=-1.278e+00;SOR=1.112;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:335,0,212
chr1	47278997	rs4646486	T	C	258.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;DB;DP=14;ExcessHet=3.9794;FS=7.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.17;ReadPosRankSum=0.627;SOR=0.052;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:86:86,0,329
chr1	47279175	rs4646487	C	T	2343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.450e-01;DB;DP=122;ExcessHet=3.9794;FS=0.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=-6.400e-02;SOR=0.784;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,60:122:99:1210,0,1501
chr1	47279558	rs4646489	CCCT	C	6586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=186;ExcessHet=3.9794;FS=1.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-1.043e+00;SOR=0.795;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:107,79:186:99:2975,0,4877
chr1	47280085	rs33942115	C	CCT	2384.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=33;ExcessHet=6.9897;FS=0.919;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=-3.900e-02;SOR=0.844;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,23:33:99:927,0,354
chr1	47280497	rs113485887	G	GAACT	316.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=1.01;SOR=1.179;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:28:81,0,28
chr1	47280550	rs11576162	G	C	83.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=2.10;SOR=0.283;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:92:92,0,235
chr1	47283505	rs4646495	G	T	1009.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.89;DB;DP=74;ExcessHet=3.0103;FS=2.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=1.03;SOR=0.459;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,35:74:99:1018,0,1005
chr1	47284526	rs3766196	C	A	313.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.828e+00;DB;DP=22;ExcessHet=3.0103;FS=2.262;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.330;SOR=0.223;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:322,0,330
chr1	47284572	rs3766195	G	A	233.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-9.840e-01;SOR=1.609;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:99:242,0,99
chr1	47348573	rs202002284	C	G	284.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=4.191;MQ=38.99;MQRankSum=0.812;QD=13.53;ReadPosRankSum=0.992;SOR=0.078;VQSLOD=-4.244e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:106,0,194
chr1	47351034	rs5003006	T	A	538.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=9;ExcessHet=3.9794;FS=3.452;MQ=46.37;MQRankSum=-2.200e+00;QD=17.38;ReadPosRankSum=0.849;SOR=2.030;VQSLOD=-2.936e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:45:45,0,224
chr1	47351052	rs5003005	A	T	780.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=10;ExcessHet=3.9794;FS=5.478;MQ=48.27;MQRankSum=-2.287e+00;QD=19.52;ReadPosRankSum=0.541;SOR=2.546;VQSLOD=-3.139e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:43:43,0,265
chr1	47395973	rs1126743	G	A	3802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780e+00;DB;DP=90;ExcessHet=6.9897;FS=2.469;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-1.620e-01;SOR=0.527;VQSLOD=6.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,41:90:99:1019,0,1387
chr1	47398228	rs148556935	G	A	131.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.291e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=44.93;MQRankSum=-1.003e+00;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=0.065;SOR=0.473;VQSLOD=-2.230e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:140,0,313
chr1	47398496	rs1126742	A	G	7390.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.08;DB;DP=341;ExcessHet=3.9794;FS=2.456;MQ=55.67;MQRankSum=-7.472e+00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=0.666;SOR=0.547;VQSLOD=-3.836e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:208,133:341:99:3331,0,5162
chr1	47398743	rs3890011	G	C	4169.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=106;ExcessHet=6.9897;FS=3.136;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-1.590e-01;SOR=0.542;VQSLOD=6.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,51:106:99:1343,0,1454
chr1	47398913	rs3890010	C	T	188.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.91;ReadPosRankSum=1.67;SOR=0.223;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:197,0,470
chr1	47399415	rs28438640	C	A	584.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.66;ReadPosRankSum=0.463;SOR=1.101;VQSLOD=6.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:28:114,0,28
chr1	47399497	rs4660980	T	C	383.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-1.850e-01;SOR=0.223;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:392,0,371
chr1	47399967	rs28451040	G	A	7447.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=207;ExcessHet=6.9897;FS=4.036;MQ=45.96;MQRankSum=-5.400e-02;QD=12.03;ReadPosRankSum=-1.010e-01;SOR=0.957;VQSLOD=-3.140e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,91:207:99:2308,0,2913
chr1	47401023	rs150932197	T	C	508.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=38;ExcessHet=3.0103;FS=1.237;MQ=45.53;MQRankSum=-3.777e+00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=2.01;SOR=0.941;VQSLOD=-2.736e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:517,0,710
chr1	47401424	rs2269231	A	T	4239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=117;ExcessHet=6.9897;FS=1.407;MQ=54.69;MQRankSum=-5.900e+00;QD=11.81;ReadPosRankSum=0.715;SOR=0.807;VQSLOD=-4.631e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:66,51:117:99:1327,0,1767
chr1	47401466	rs2269232	T	C	2912.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.987e+00;DB;DP=70;ExcessHet=6.9897;FS=3.383;MQ=57.84;MQRankSum=-3.122e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=0.928;SOR=0.446;VQSLOD=-9.357e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,30:70:99:813,0,1166
chr1	47402487	.	TTGTG	T	11918.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.779;DP=121;ExcessHet=3.0103;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.56;ReadPosRankSum=0.284;SOR=0.637;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,112:121:99:5092,362,0
chr1	47495605	rs17102977	A	G	213.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=-1.750e-01;SOR=2.179;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:222,0,133
chr1	47497037	rs11211420	G	A	355.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=-1.801e+00;SOR=0.495;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,16:42:99:364,0,711
chr1	47497292	rs115416850	G	A	362.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.026e+00;DB;DP=48;ExcessHet=3.0103;FS=1.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.55;ReadPosRankSum=0.328;SOR=0.929;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,16:48:99:371,0,916
chr1	47497472	rs55694114	G	A	68.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:77,0,33
chr1	47504217	rs2221324	A	G	386.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=0.503;SOR=0.481;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:395,0,172
chr1	47504936	rs2292060	C	A	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.126e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.023;SOR=0.560;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:396,0,505
chr1	47514024	rs10890447	A	G	428.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-1.350e-01;SOR=0.352;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:39:195,0,39
chr1	47515563	rs11448645	G	GA	657.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=-4.100e-01;SOR=1.096;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:19:99:293,0,199
chr1	47515596	rs1393659	A	C	1270.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=42;ExcessHet=3.9794;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.973;SOR=0.485;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:691,0,460
chr1	47534107	rs2055500	A	T	1335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.71;DB;DP=29;ExcessHet=3.9794;FS=3.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-3.400e-02;SOR=0.138;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:381,0,635
chr1	47547972	rs1502924	C	G	1413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-02;DB;DP=108;ExcessHet=3.0103;FS=3.598;MQ=57.03;MQRankSum=1.58;NEGATIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=2.38;SOR=0.412;VQSLOD=-2.338e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,58:108:99:1422,0,1186
chr1	47550102	rs149128646	G	A	53.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=44.68;MQRankSum=-9.670e-01;QD=17.81;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=-3.592e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:62,0,35
chr1	47550145	rs143247707	C	T	354.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=53.21;MQRankSum=-2.019e+00;NEGATIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=0.876;SOR=1.751;VQSLOD=-1.685e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:81:81,0,180
chr1	47571902	rs4926802	C	T	1909.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412e+00;DB;DP=47;ExcessHet=3.9794;FS=0.748;MQ=57.73;MQRankSum=-3.890e+00;NEGATIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=1.20;SOR=0.610;VQSLOD=-1.922e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,21:47:99:0|1:47571902_C_T:772,0,972:47571902
chr1	47571905	rs28463559	C	T	1918.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980e-01;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=57.76;MQRankSum=-3.889e+00;NEGATIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=1.09;SOR=0.651;VQSLOD=-1.923e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,20:46:99:0|1:47571902_C_T:751,0,975:47571902
chr1	47571943	rs149137568	CTTT	C	1682.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=58.72;MQRankSum=-2.714e+00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=-6.600e-01;SOR=0.715;VQSLOD=1.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,15:36:99:553,0,608
chr1	47571996	rs4926804	T	C	986.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=34;ExcessHet=3.9794;FS=0.941;MQ=57.71;MQRankSum=-2.644e+00;QD=13.70;ReadPosRankSum=-3.990e-01;SOR=0.909;VQSLOD=-1.582e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,15:34:99:405,0,413
chr1	47572046	rs4926805	C	T	537.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977e+00;DB;DP=12;ExcessHet=3.9794;FS=2.165;MQ=59.32;MQRankSum=-5.490e-01;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=1.66;SOR=0.250;VQSLOD=0.766;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:226,0,183
chr1	47581122	rs7547893	A	T	284.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-02;DB;DP=19;ExcessHet=3.9794;FS=8.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=0.295;SOR=0.061;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:200,0,330
chr1	47582195	rs10890464	G	A	285.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e+00;DB;DP=10;ExcessHet=3.9794;FS=2.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-4.970e-01;SOR=0.204;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:132,0,193
chr1	47582246	rs1295463	C	T	1093.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;DB;DP=21;ExcessHet=6.9897;FS=1.856;MQ=60.00;MQRankSum=0.00;QD=12.29;ReadPosRankSum=-1.330e-01;SOR=0.922;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:194,0,265
chr1	47582292	rs10890465	T	G	1036.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=27;ExcessHet=3.9794;FS=8.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=1.09;SOR=1.670;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:452,0,266
chr1	47583284	rs6664392	G	A	280.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=6;ExcessHet=3.9794;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=-2.100e-01;SOR=2.093;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:25:179,0,25
chr1	47583415	rs6664496	G	T	1494.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.080e-01;DB;DP=46;ExcessHet=3.9794;FS=5.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.470;SOR=0.306;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,28:46:99:694,0,424
chr1	47603033	rs34164833	GT	G	720.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=17;ExcessHet=3.9794;FS=1.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.047;SOR=1.110;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:249,0,285
chr1	47607281	rs12564525	C	T	1531.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-01;DB;DP=112;ExcessHet=3.0103;FS=1.584;MQ=59.67;MQRankSum=0.179;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.079;SOR=0.548;VQSLOD=0.600;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,63:112:99:1540,0,1240
chr1	47607547	rs12404941	C	G	66.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.29;MQRankSum=0.730;NEGATIVE_TRAIN_SITE;QD=5.10;ReadPosRankSum=0.254;SOR=0.124;VQSLOD=-1.183e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:13:75:75,0,347
chr1	47607641	rs11211465	C	T	1240.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.957e+00;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.444;SOR=0.642;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1249,0,1414
chr1	47607762	rs2056901	T	C	2645.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DB;DP=245;ExcessHet=3.0103;FS=0.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.382;SOR=0.627;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,109:245:99:2654,0,3380
chr1	47607785	rs2056900	G	A	2484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;DB;DP=242;ExcessHet=3.0103;FS=0.473;MQ=59.63;MQRankSum=-2.775e+00;QD=10.27;ReadPosRankSum=0.872;SOR=0.671;VQSLOD=-1.447e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:137,105:242:99:2493,0,3402
chr1	47607815	.	T	C	2496.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DP=224;ExcessHet=3.0103;FS=0.000;MQ=58.84;MQRankSum=-4.941e+00;NEGATIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-3.440e-01;SOR=0.683;VQSLOD=-2.250e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:126,98:224:99:2505,0,3166
chr1	47607851	rs2056899	A	T	8280.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070e+00;DB;DP=183;ExcessHet=6.9897;FS=1.142;MQ=57.85;MQRankSum=-7.034e+00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-9.640e-01;SOR=0.594;VQSLOD=-1.823e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:98,85:183:99:2068,0,2575
chr1	47608983	rs113777592	G	T	1568.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516e+00;DB;DP=180;ExcessHet=3.0103;FS=1.173;MQ=42.87;MQRankSum=-3.369e+00;QD=8.71;ReadPosRankSum=0.679;SOR=0.606;VQSLOD=-4.457e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,72:180:99:1577,0,2791
chr1	47609489	rs10789501	T	C	5678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670e+00;DB;DP=160;ExcessHet=3.9794;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=1.87;SOR=0.673;VQSLOD=6.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,79:160:99:1856,0,2145
chr1	47609668	rs911909	T	C	3425.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=106;ExcessHet=3.9794;FS=0.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=-6.180e-01;SOR=0.625;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,57:106:99:1411,0,1184
chr1	47610065	rs149718343	A	C	1280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.267e+00;DB;DP=94;ExcessHet=3.0103;FS=0.997;MQ=56.33;MQRankSum=0.794;NEGATIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-1.780e-01;SOR=0.512;VQSLOD=-2.670e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,48:94:99:1289,0,1444
chr1	47611598	rs2405599	T	C	1388.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=109;ExcessHet=3.0103;FS=2.515;MQ=59.21;MQRankSum=-3.440e+00;NEGATIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-5.150e-01;SOR=0.456;VQSLOD=-1.450e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,49:109:99:1397,0,1716
chr1	47614185	rs760440	G	C	506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=0.516;SOR=0.922;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:205,0,138
chr1	47614434	rs4926600	C	T	2418.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.940e-01;DB;DP=232;ExcessHet=3.0103;FS=2.909;MQ=57.92;MQRankSum=0.516;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-8.810e-01;SOR=0.892;VQSLOD=-1.006e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:124,108:232:99:2427,0,2980
chr1	47614621	rs11211469	A	G	943.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e-01;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=57.12;MQRankSum=-1.387e+00;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.743;SOR=0.732;VQSLOD=3.500e-03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:481,0,443
chr1	47614664	rs10789502	A	C	513.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=54.55;MQRankSum=-2.859e+00;NEGATIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-1.410e-01;SOR=0.356;VQSLOD=-3.131e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:255,0,175
chr1	47650053	rs3818303	A	C	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.50;SOR=2.303;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:47650053_A_C:90,6,0:47650053
chr1	47650054	rs66681495	AT	A	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.55;SOR=2.303;VQSLOD=6.02;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:47650053_A_C:90,6,0:47650053
chr1	47650059	rs55934316	C	T	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.15;SOR=2.303;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:47650053_A_C:90,6,0:47650053
chr1	47652870	rs10549554	CCTTG	C	10685.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.770e-01;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=-8.330e-01;SOR=3.506;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,66:66:99:1|1:47652870_CCTTG_C:3094,208,0:47652870
chr1	47652875	rs10549555	AGC	A	10872.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.260e-01;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=-9.870e-01;SOR=3.249;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,69:69:99:1|1:47652870_CCTTG_C:3094,208,0:47652870
chr1	47652879	rs60327556	T	A	10839.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.743e+00;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.86;ReadPosRankSum=-1.282e+00;SOR=3.022;VQSLOD=18.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,68:68:99:1|1:47652870_CCTTG_C:3061,205,0:47652870
chr1	47655816	rs2248907	A	G	2563.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=29.20;SOR=5.994;VQSLOD=6.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:606,45,0
chr1	47685455	rs927462	T	C	11222.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.09;SOR=1.241;VQSLOD=18.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3355,348,0
chr1	47689842	rs34087210	C	G	1237.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.553e+00;DB;DP=24;ExcessHet=1.5490;FS=7.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.92;ReadPosRankSum=-9.340e-01;SOR=0.088;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:767,72,0
chr1	47691568	rs145295250	GCAGA	G	10172.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=146;ExcessHet=1.5490;FS=1.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.40;ReadPosRankSum=0.736;SOR=0.788;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,146:146:99:6514,440,0
chr1	47717189	rs2758735	A	G	4993.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.461e+00;DB;DP=112;ExcessHet=1.5490;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.494;SOR=0.811;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3361,335,0
chr1	47735280	rs2742104	T	C	1950.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=0.355;SOR=0.917;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1211,108,0
chr1	47753405	rs12125261	G	A	2456.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.120e-01;DB;DP=62;ExcessHet=1.5490;FS=5.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=-6.980e-01;SOR=0.259;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1891,185,0
chr1	47770786	rs6692734	T	A	866.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.294e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=-3.120e-01;SOR=0.735;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:366,30,0
chr1	47823776	.	C	CT	131.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.96;ReadPosRankSum=0.674;SOR=0.582;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:45:45,0,56
chr1	47841038	rs3214951	G	GA	1486.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.870e-01;DB;DP=33;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.78;ReadPosRankSum=1.67;SOR=1.179;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1005,99,0
chr1	47841109	rs2253511	T	C	1390.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.57;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.26;SOR=7.112;VQSLOD=4.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:282,21,0
chr1	47842431	rs3125648	G	A	7346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=1.148;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2100,186,0
chr1	47842666	rs2820981	A	T	4614.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=1.296;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1379,147,0
chr1	47842777	rs1044457	C	T	608.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.68;DB;DP=9;ExcessHet=1.5490;FS=4.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=-1.596e+00;SOR=1.981;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:305,27,0
chr1	47883019	rs6666370	T	C	934.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=3.258;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:47883019_T_C:180,12,0:47883019
chr1	47883024	rs2820969	A	G	836.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.91;SOR=3.383;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:47883019_T_C:180,12,0:47883019
chr1	47904668	rs3046924	T	TCCGCAC	16310.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=29.83;SOR=0.757;VQSLOD=5.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,94:94:99:4440,307,0
chr1	47904909	rs2405913	G	C	8327.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.02;SOR=0.929;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2804,228,0
chr1	48260462	.	GT	G	339.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DP=22;ExcessHet=6.9897;FS=7.322;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.66;ReadPosRankSum=0.685;SOR=2.376;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,6:22:91:91,0,190
chr1	48459907	rs3814006	C	T	5248.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=469;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-1.170e+00;SOR=0.693;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:256,213:469:99:5257,0,6112
chr1	48688376	rs41287916	A	G	882.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.818;SOR=0.784;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,32:78:99:891,0,1227
chr1	48690229	rs10788884	C	A	2072.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.39;ReadPosRankSum=0.234;SOR=1.275;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:259,0,318
chr1	48694259	rs764656	T	C	91.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=1.80;SOR=1.022;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:100,0,220
chr1	48695417	rs212990	A	G	357.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.94;SOR=4.615;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr1	48697733	rs212991	T	G	14110.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.66;SOR=1.621;VQSLOD=5.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4906,435,0
chr1	48697751	rs61997212	C	T	1265.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-8.150e-01;SOR=0.764;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,49:117:99:1274,0,1768
chr1	48699565	rs4926721	C	T	969.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=5.283;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:408,36,0
chr1	48705391	rs11205459	G	A	323.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679e+00;DB;DP=17;ExcessHet=3.9794;FS=8.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=1.27;SOR=0.030;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:170,0,343
chr1	48707838	rs705430	A	G	5601.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.72;SOR=2.474;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1653,150,0
chr1	48708250	rs78427303	C	T	623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=41;ExcessHet=3.0103;FS=1.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.536;SOR=0.495;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:632,0,468
chr1	48708278	rs75538709	G	A	599.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768e+00;DB;DP=37;ExcessHet=3.0103;FS=1.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=0.486;SOR=0.407;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,23:37:99:608,0,379
chr1	48713394	rs986027	C	T	1244.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.59;SOR=6.932;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:468,36,0
chr1	48764419	rs1056042	C	T	1552.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=68;ExcessHet=3.9794;FS=12.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=1.09;SOR=1.438;VQSLOD=16.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,33:68:99:811,0,886
chr1	48821318	rs147569864	C	CA	579.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e-01;DB;DP=60;ExcessHet=3.0103;FS=5.265;MQ=60.00;MQRankSum=0.00;QD=9.65;ReadPosRankSum=0.476;SOR=0.404;VQSLOD=5.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,27:60:99:588,0,755
chr1	48866555	rs41289162	A	G	815.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.000e-03;DB;DP=66;ExcessHet=3.0103;FS=0.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-1.730e-01;SOR=0.936;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,34:66:99:824,0,757
chr1	48869206	rs2253140	G	A	349.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=4.615;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:155,12,0
chr1	48869288	rs3738309	T	A	436.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=0.248;SOR=1.136;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:209,0,163
chr1	48902977	rs2261674	G	C	1441.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=41.07;POSITIVE_TRAIN_SITE;QD=34.32;SOR=0.788;VQSLOD=-3.535e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:561,54,0
chr1	48937691	rs2275309	A	T	801.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DB;DP=34;ExcessHet=3.9794;FS=2.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-2.270e-01;SOR=1.067;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:373,0,305
chr1	49052263	rs2627754	C	A	503.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=9;ExcessHet=1.5490;FS=2.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.64;ReadPosRankSum=0.405;SOR=1.609;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:373,27,0
chr1	49052933	rs2803277	T	C	4661.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.930e-01;DB;DP=74;ExcessHet=3.9794;FS=5.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.568;SOR=0.453;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2315,222,0
chr1	49056695	rs7543402	T	C	2156.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.095;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-5.400e-02;SOR=0.670;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1353,138,0
chr1	49100332	rs319983	C	T	2573.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260e+00;DB;DP=52;ExcessHet=1.5490;FS=0.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=-9.110e-01;SOR=0.859;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1826,156,0
chr1	49113319	rs319953	T	C	3597.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.000e-01;DB;DP=54;ExcessHet=3.9794;FS=1.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=0.160;SOR=0.568;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1606,162,0
chr1	49128720	rs320007	C	T	2124.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.430e-01;DB;DP=45;ExcessHet=1.5490;FS=2.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-2.600e-01;SOR=0.368;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1469,135,0
chr1	49193394	rs1385152	G	T	1176.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.86;ReadPosRankSum=1.65;SOR=2.432;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:592,42,0
chr1	49208095	rs56653741	A	AG	354.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.540e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=-1.350e-01;SOR=2.147;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr1	49208618	rs1934393	G	C	236.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=-3.190e-01;SOR=2.833;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr1	49224584	rs1128934	G	T	6006.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=93;ExcessHet=3.9794;FS=2.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.311;SOR=0.563;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2981,278,0
chr1	49242610	.	C	G	113.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DP=14;ExcessHet=6.9897;FS=0.000;MQ=58.67;MQRankSum=-1.140e-01;NEGATIVE_TRAIN_SITE;QD=3.16;ReadPosRankSum=-4.510e-01;SOR=1.051;VQSLOD=-1.526e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:47:47,0,79
chr1	49332724	rs6703833	A	C	1834.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.541;DB;DP=35;ExcessHet=1.5490;FS=4.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=-1.145e+00;SOR=1.286;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1125,105,0
chr1	49332969	rs61785986	A	G	2054.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.130e-01;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.01;ReadPosRankSum=1.98;SOR=0.915;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:929,72,0
chr1	49711281	rs7528510	C	T	440.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.890e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=0.135;SOR=0.446;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:270,27,0
chr1	50162840	rs6689057	C	T	726.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.180e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.07;ReadPosRankSum=-7.120e-01;SOR=2.584;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:361,30,0
chr1	50163361	rs11205639	A	G	305.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=-5.240e-01;SOR=1.179;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	50331725	rs10788920	T	C	2004.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=1.341;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:584,66,0
chr1	50660981	rs3001641	A	G	760.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.665;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.48;ReadPosRankSum=-4.750e-01;SOR=4.615;VQSLOD=14.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr1	50661411	rs2480683	C	T	9346.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.074e+00;DB;DP=117;ExcessHet=3.0103;FS=0.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-3.090e-01;SOR=0.797;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3575,347,0
chr1	50661688	rs2480682	T	C	1453.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.801;DB;DP=13;ExcessHet=3.0103;FS=5.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=0.624;SOR=0.193;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:477,39,0
chr1	50666515	rs2494876	C	T	6835.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=2.232;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3102,279,0
chr1	50884230	rs1296714	G	C	985.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=6.439;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	50884778	rs2746610	G	A,*	5154.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.63;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=-1.800e-01;QD=30.14;ReadPosRankSum=1.69;SOR=0.977;VQSLOD=-4.399e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,16,25:44:99:1455,918,996,447,0,643
chr1	50884784	rs368034286	G	A	1023.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=51;ExcessHet=3.0103;FS=2.626;MQ=59.71;MQRankSum=1.54;NEGATIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=-2.168e+00;SOR=1.306;VQSLOD=-2.149e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,27:51:99:1032,0,844
chr1	50886621	.	C	A	541.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156e+00;DP=37;ExcessHet=3.0103;FS=1.316;MQ=60.00;MQRankSum=0.00;QD=14.63;ReadPosRankSum=0.061;SOR=0.473;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:550,0,414
chr1	50887021	.	T	C	3506.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DP=290;ExcessHet=3.0103;FS=1.400;MQ=60.00;MQRankSum=0.00;QD=12.09;ReadPosRankSum=-1.152e+00;SOR=0.792;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:153,137:290:99:3515,0,3898
chr1	50907438	rs4381241	T	C	675.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=-3.420e-01;SOR=1.609;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:77,0,73
chr1	50917596	rs12565493	T	C	72.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=2.303;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	50956122	.	AGG	A	242.05	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=38.63;SOR=3.912;VQSLOD=4.11;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:50956122_AGG_A:259,18,0:50956122
chr1	50956125	.	AAGGAAG	A	243.05	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.21;SOR=3.912;VQSLOD=4.51;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:50956122_AGG_A:260,18,0:50956122
chr1	50956212	rs149582773	C	CAAATACAGTGG	5554.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=27.32;SOR=1.487;VQSLOD=5.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,29:29:99:1473,99,0
chr1	50957509	rs1149790	A	T	3633.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=3.014;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:970,84,0
chr1	51180660	rs17384533	A	G	653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=53;ExcessHet=3.0103;FS=4.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-3.860e-01;SOR=1.410;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:662,0,791
chr1	51753904	rs17392930	G	A	1139.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-01;DB;DP=117;ExcessHet=3.0103;FS=4.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=-5.320e-01;SOR=1.031;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,50:117:99:1148,0,1611
chr1	51808567	rs12072333	C	T	3088.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DB;DP=54;ExcessHet=6.9897;FS=2.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-9.050e-01;SOR=0.558;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,35:54:99:883,0,409
chr1	51808623	rs35273278	C	G	3437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053e+00;DB;DP=60;ExcessHet=6.9897;FS=2.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-7.500e-02;SOR=0.554;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,37:60:99:998,0,623
chr1	51810587	rs79266992	C	T	2703.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540e-01;DB;DP=223;ExcessHet=3.0103;FS=1.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-3.130e-01;SOR=0.770;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,117:223:99:2712,0,2419
chr1	51826921	rs17567	T	C	4557.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;DB;DP=114;ExcessHet=6.9897;FS=0.395;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.028;SOR=0.737;VQSLOD=6.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,56:114:99:1349,0,1406
chr1	51869248	rs12756284	C	T	1523.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374e+00;DB;DP=23;ExcessHet=6.9897;FS=3.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-2.160e-01;SOR=0.430;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:315,0,425
chr1	51871438	rs10529789	G	GACTC	1639.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DB;DP=27;ExcessHet=6.9897;FS=6.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=-3.780e-01;SOR=2.746;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,13:27:99:537,0,805
chr1	51873951	rs1065754	G	A	6230.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=1.251;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1947,183,0
chr1	51905949	rs71769603	CTGTG	CTGTGTG,C	5696.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.398e+00;DB;DP=75;ExcessHet=3.0103;FS=3.006;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=-9.280e-01;SOR=0.379;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,37,23:75:99:1728,862,900,851,0,1610
chr1	51929504	rs5774101	TA	T	1855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=0.921;SOR=0.748;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,17:34:99:532,0,517
chr1	51931124	rs17397993	A	G	147.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.193;SOR=1.022;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:156,0,260
chr1	51956019	rs59040444	C	T	372.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-2.720e-01;SOR=0.540;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:106,0,129
chr1	52215419	rs79304353	G	T	439.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=-1.238e+00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=-7.000e-02;SOR=0.631;VQSLOD=1.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,17:45:99:448,0,826
chr1	52264064	rs1770791	A	G	2302.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.590e-01;DB;DP=46;ExcessHet=3.9794;FS=2.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=-6.150e-01;SOR=1.009;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:618,0,490
chr1	52265969	rs35903274	C	T	211.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.549;SOR=0.250;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:47:47,0,264
chr1	52279650	rs2982846	T	G	5049.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570e-01;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-8.730e-01;SOR=0.721;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,30:60:99:768,0,779
chr1	52280065	rs74080640	C	G	149.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.18;SOR=3.258;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	52293638	rs706495	G	A	1804.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=7.658;VQSLOD=24.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:529,39,0
chr1	52402856	rs10888741	T	G	2697.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=-8.380e-01;SOR=0.667;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,20:52:99:487,0,846
chr1	52402956	rs10888742	G	A	6675.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642e+00;DB;DP=91;ExcessHet=3.0103;FS=2.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=-1.449e+00;SOR=0.979;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,42:91:99:975,0,1397
chr1	52488946	rs142470551	GT	G	215.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.700;SOR=1.022;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:160,0,123
chr1	52489267	rs34432780	CAG	C	1372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=94;ExcessHet=3.0103;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=0.785;SOR=1.038;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:57,37:94:99:1381,0,2255
chr1	52489321	rs2794990	C	A	533.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e+00;DB;DP=54;ExcessHet=3.0103;FS=2.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-1.590e-01;SOR=1.085;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,22:54:99:542,0,922
chr1	52489322	rs2783178	G	A	7553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=1.796;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2063,162,0
chr1	52489932	rs2809921	G	A	62.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:37:71,0,37
chr1	52494417	rs2809920	A	T	294.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=1.66;SOR=1.329;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:303,0,171
chr1	52498370	rs2809917	C	T	1054.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.060e-01;DB;DP=26;ExcessHet=1.5490;FS=3.178;MQ=59.96;MQRankSum=0.833;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=0.283;SOR=1.455;VQSLOD=1.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:77:858,77,0
chr1	52498861	rs2783175	A	T	1802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.310e-01;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.409e+00;SOR=0.714;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,72:162:99:1811,0,2516
chr1	52499070	rs377187997	CGCCCGCCACCTGAGGTCCCGCGATCGG	C	9717.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=349;ExcessHet=3.9794;FS=1.805;MQ=60.00;MQRankSum=0.00;QD=14.95;ReadPosRankSum=-1.430e-01;SOR=0.863;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:203,146:349:99:5475,0,8418
chr1	52499489	rs2809916	G	A	3765.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=298;ExcessHet=3.0103;FS=2.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.694;SOR=0.550;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:151,147:298:99:3774,0,3957
chr1	52507070	rs2809958	T	A	2739.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=53;ExcessHet=1.5490;FS=8.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=-1.426e+00;SOR=0.171;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1907,159,0
chr1	52507518	rs12759735	G	A	61.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:70,0,65
chr1	52517804	rs2809956	T	C	1150.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=2.910;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr1	52703491	rs35385323	G	C	1788.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170e-01;DB;DP=55;ExcessHet=3.9794;FS=1.537;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.164;SOR=0.648;VQSLOD=6.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,34:55:99:952,0,551
chr1	52705285	rs3790523	A	G	1799.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=1.28;SOR=0.658;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,33:72:99:807,0,948
chr1	52705427	rs3790522	T	C	348.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=10;ExcessHet=3.9794;FS=7.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=0.081;SOR=2.985;VQSLOD=17.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:169,0,100
chr1	52729425	.	T	TCC	94.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-6.960e-01;SOR=0.836;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:13:99:103,0,178
chr1	52744022	rs80318843	A	G	1370.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=49;ExcessHet=3.9794;FS=2.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.180;SOR=1.070;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,24:49:99:669,0,654
chr1	52759048	.	CA	C	164.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DP=9;ExcessHet=6.9897;FS=9.513;MQ=59.86;MQRankSum=0.00;QD=4.58;ReadPosRankSum=0.495;SOR=0.078;VQSLOD=2.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,3:9:16:16,0,113
chr1	52761799	rs368234391	GTA	G	83.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.42;ReadPosRankSum=0.414;SOR=0.307;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:92:92,0,149
chr1	52810393	rs58745889	C	T	1021.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.381;SOR=0.683;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,13:39:99:397,0,845
chr1	52819888	rs2477101	A	G	2064.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=2.876;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:588,45,0
chr1	52820226	rs2820334	G	A	12951.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=0.855;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3896,359,0
chr1	52820805	rs6588428	G	A	1082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140e-01;DB;DP=33;ExcessHet=3.9794;FS=0.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=-2.580e-01;SOR=0.887;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:562,0,426
chr1	52821830	rs148030121	G	T	908.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.786e+00;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.97;ReadPosRankSum=0.020;SOR=0.453;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:917,0,1348
chr1	52826532	rs7339941	G	A	191.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=5;ExcessHet=3.9794;FS=10.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=1.15;SOR=3.901;VQSLOD=12.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:106,0,69
chr1	52828384	rs11555349	A	G	2944.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;DB;DP=169;ExcessHet=3.9794;FS=0.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=1.04;SOR=0.620;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,77:169:99:1714,0,2082
chr1	52830241	rs147211573	C	T	1918.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.290e-01;DB;DP=130;ExcessHet=3.0103;FS=0.665;MQ=60.00;MQRankSum=0.00;QD=14.76;ReadPosRankSum=-9.860e-01;SOR=0.814;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,72:130:99:1927,0,1587
chr1	52847471	rs3087474	C	T	1681.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040e-01;DB;DP=71;ExcessHet=3.9794;FS=1.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-1.230e-01;SOR=0.819;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,29:71:99:738,0,1148
chr1	52850446	rs3087484	T	C	594.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.844;SOR=0.418;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:207,0,427
chr1	52851719	rs11205953	G	C	440.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=29;ExcessHet=3.9794;FS=4.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=1.02;SOR=0.269;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:250,0,477
chr1	52855047	rs6672059	C	T	640.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728e+00;DB;DP=44;ExcessHet=3.0103;FS=1.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.201;SOR=0.439;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:649,0,524
chr1	52863683	rs112369447	T	G	402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.450;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:110,0,102
chr1	52876562	rs11205954	A	G	1568.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=4.407;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:476,33,0
chr1	52877130	rs10128030	G	C	278.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=1.15;SOR=0.330;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:103,0,27
chr1	52878300	rs4319263	T	A	1492.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DB;DP=62;ExcessHet=3.9794;FS=3.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.46;SOR=0.440;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,25:62:99:498,0,970
chr1	52882406	rs6677047	A	G	1456.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=68;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=0.366;SOR=0.724;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,26:68:99:623,0,1041
chr1	52900823	rs2274147	A	G	186.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=1.15;SOR=0.892;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:122,0,26
chr1	52929339	rs41294510	G	A	1750.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DB;DP=72;ExcessHet=3.9794;FS=0.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-5.530e-01;SOR=0.587;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:891,0,958
chr1	52947350	rs369545413	TA	T	66.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.644e+00;DB;DP=18;ExcessHet=3.0103;FS=1.418;MQ=59.89;MQRankSum=0.00;QD=3.68;ReadPosRankSum=0.668;SOR=0.421;VQSLOD=5.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:75:75,0,265
chr1	52991037	rs11347391	CT	C	81.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.65;ReadPosRankSum=0.967;SOR=0.941;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:44:44,0,44
chr1	52991983	rs57766167	A	G	521.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-01;DB;DP=22;ExcessHet=3.9794;FS=2.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.380;SOR=0.201;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:257,0,431
chr1	53068093	rs11205977	G	T	1147.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=95;ExcessHet=3.0103;FS=0.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.101;SOR=0.579;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,44:95:99:1156,0,1198
chr1	53072454	rs1970951	T	C	14856.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.96;DB;DP=192;ExcessHet=3.0103;FS=0.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-1.138e+00;SOR=0.646;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,192:192:99:6000,576,0
chr1	53072741	rs1970950	A	G	1695.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=1.36;SOR=0.818;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:365,0,131
chr1	53072796	rs1970949	G	C	786.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=1.04;SOR=2.494;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:58:241,0,58
chr1	53073838	rs11590859	G	T	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.860e-01;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-5.100e-02;SOR=0.643;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:660,0,743
chr1	53153432	rs443751	T	C	1328.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=123;ExcessHet=3.0103;FS=4.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.209;SOR=0.374;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,54:123:99:1337,0,1736
chr1	53164220	rs375945	C	T	474.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=-1.630e-01;SOR=1.508;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:187,0,107
chr1	53192082	rs76280926	T	G	76.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.66;SOR=1.179;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr1	53192112	rs113441120	T	C	77.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.91;SOR=1.179;VQSLOD=18.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr1	53192187	rs269298	C	T	746	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.64;SOR=3.611;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:327,24,0
chr1	53262151	rs56078509	C	T	991.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125e+00;DB;DP=82;ExcessHet=3.0103;FS=1.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=5.000e-03;SOR=0.497;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1000,0,1108
chr1	53267474	rs199605472	GT	G	568.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-02;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.25;ReadPosRankSum=0.00;SOR=0.569;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,5:43:5:5,0,841
chr1	53268010	.	CTCTT	C	43.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.61;ReadPosRankSum=0.645;SOR=0.307;VQSLOD=5.41;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,2:12:52:0|1:53268010_CTCTT_C:52,0,398:53268010
chr1	53268016	.	T	A	48.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DP=11;ExcessHet=3.0103;FS=0.000;MQ=58.47;MQRankSum=0.230;NEGATIVE_TRAIN_SITE;QD=4.42;SOR=0.086;VQSLOD=-1.450e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:57:0|1:53268010_CTCTT_C:57,0,355:53268010
chr1	53308665	rs532242	C	G	6530.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.63;DB;DP=148;ExcessHet=1.5490;FS=1.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=-1.068e+00;SOR=0.801;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4481,444,0
chr1	53308807	rs533935	T	C	577.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.117e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=-1.420e-01;SOR=0.593;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:230,18,0
chr1	53308858	rs534070	T	G	442.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.92;SOR=2.670;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr1	53320274	rs480299	G	T	7723.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=1.049;VQSLOD=19.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3322,320,0
chr1	53320545	rs34377628	G	GT	153.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=21.95;SOR=4.174;VQSLOD=3.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr1	53323492	rs10788945	C	A	3816.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=24;ExcessHet=3.0103;FS=9.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.50;ReadPosRankSum=0.867;SOR=3.919;VQSLOD=13.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:915,72,0
chr1	53323571	rs11206035	T	C	562.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=3.767;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	53326210	rs546334	T	C	571.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.72;SOR=5.421;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:330,24,0
chr1	53332445	rs564273	G	C	978.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=6.358;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr1	53333116	rs557847	A	G	1087.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=2.517;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:292,27,0
chr1	53351349	rs10581739	ATT	A	3040.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=8.468;VQSLOD=7.54;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1845,123,0
chr1	53351586	.	CTTTTCTTCTTTTTT	C	1722.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DP=121;ExcessHet=3.0103;FS=2.717;MQ=60.00;MQRankSum=0.00;QD=14.23;ReadPosRankSum=1.41;SOR=0.433;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:74,47:121:99:1731,0,9918
chr1	53364976	rs576891	A	G	6668.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=1.405;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3253,306,0
chr1	53365235	rs520281	G	C	738.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.30;SOR=5.784;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:267,18,0
chr1	53387379	rs7552139	G	C	5481.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=4.351;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2565,216,0
chr1	53392908	rs1242331	A	G	387.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.42;POSITIVE_TRAIN_SITE;QD=29.81;SOR=1.179;VQSLOD=4.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:111,12,0
chr1	53416721	rs35364355	G	A	906.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=18;ExcessHet=3.9794;FS=3.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=-2.650e-01;SOR=0.105;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:319,0,259
chr1	53543112	rs946590	C	G	11952.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.130;DB;DP=108;ExcessHet=3.0103;FS=2.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.36;ReadPosRankSum=-5.090e-01;SOR=1.364;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:4484,325,0
chr1	53543312	rs12745973	C	T	8542.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=82;ExcessHet=3.0103;FS=1.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=-1.821e+00;SOR=0.886;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2820,246,0
chr1	53544578	rs11206088	T	C	10865.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=0.4576;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.33;SOR=2.809;VQSLOD=5.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:5009,411,0
chr1	53544597	rs1288389	T	C	9375.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.040e+00;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=-8.240e-01;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=-1.250e-01;SOR=0.670;VQSLOD=2.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3824,351,0
chr1	53553522	rs11581058	G	A	204.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.15;SOR=3.912;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
chr1	53553702	rs1288400	A	G	5621.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=2.093;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1736,165,0
chr1	53554406	rs11583585	T	C	749.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=5.892;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:461,33,0
chr1	53554533	rs35707549	A	AT	4761.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=1.703;VQSLOD=6.02;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2735,222,0
chr1	53555783	rs1288403	A	C	2719.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.347;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1372,131,0
chr1	53558583	rs34983198	C	CTG	5559.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=8.255;VQSLOD=6.92;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1343,90,0
chr1	53559198	rs141148882	G	T	2920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377e+00;DB;DP=216;ExcessHet=3.0103;FS=2.350;MQ=60.00;MQRankSum=0.00;QD=13.52;ReadPosRankSum=-6.660e-01;SOR=0.895;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,116:216:99:2929,0,2439
chr1	53568878	rs11206100	T	A	531.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=3.126;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:417,33,0
chr1	53568980	rs2242274	G	A	1515.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=1.659;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:906,81,0
chr1	53571288	rs1288422	C	G	3493.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.47;SOR=4.615;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1190,90,0
chr1	53571432	rs369559497	G	T	1006.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924e+00;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.94;ReadPosRankSum=0.914;SOR=0.693;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,42:92:99:1015,0,1385
chr1	53574123	rs1769289	C	T	2400.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=8.222;VQSLOD=23.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:523,39,0
chr1	53600350	rs1288354	A	G	296.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=8;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=-1.350e-01;SOR=1.781;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:171,0,100
chr1	53682678	rs17108140	G	A	249.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=1.15;SOR=2.833;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	53684525	rs436887	C	G	4598.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=48;ExcessHet=3.0103;FS=4.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.39;ReadPosRankSum=1.73;SOR=1.369;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1559,132,0
chr1	53686383	rs1679913	C	G	2161.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=3.113;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:889,75,0
chr1	53738419	rs41294758	C	T	2980.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.68;DB;DP=57;ExcessHet=1.5490;FS=14.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=0.152;SOR=1.758;VQSLOD=13.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1912,133,0
chr1	53746473	rs2297658	T	C	5031.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=129;ExcessHet=6.9897;FS=4.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-2.670e-01;SOR=0.951;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,67:129:99:1667,0,1514
chr1	53755117	rs13306535	G	A	1622.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=58;ExcessHet=3.9794;FS=5.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.920;SOR=1.172;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:756,0,798
chr1	53792651	rs3820198	A	C	6689.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.92;DB;DP=248;ExcessHet=3.9794;FS=5.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.380;SOR=1.128;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,122:248:99:3447,0,2948
chr1	53793248	rs1933533	T	G	348.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=3.9794;FS=4.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-2.750e-01;SOR=0.138;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:184,0,251
chr1	53793510	.	CTG	C	45.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190e-01;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.82;ReadPosRankSum=0.866;SOR=0.404;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,5:55:54:0|1:53793510_CTG_C:54,0,2325:53793510
chr1	53793511	rs4926972	T	C	1304.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e-01;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.34;ReadPosRankSum=2.11;SOR=0.772;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,26:54:99:889,0,542
chr1	53793513	.	CA	C	45.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.430e-01;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.84;ReadPosRankSum=0.761;SOR=0.425;VQSLOD=5.17;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,5:54:54:0|1:53793510_CTG_C:54,0,2325:53793510
chr1	53925373	.	G	GCCGCCC	539.14	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=20.22;SOR=3.611;VQSLOD=2.27;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:41:556,41,0
chr1	53927649	rs943521	C	A	106.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.15;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	53931983	rs58259609	G	T	100.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=2.833;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr1	53932181	rs78070589	A	G	3509.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.49;SOR=1.938;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3526,322,0
chr1	53972132	rs2296759	A	G	405.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=3.611;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:422,36,0
chr1	53972205	rs2296758	T	C	1893.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.595e+00;DB;DP=38;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=-1.104e+00;SOR=0.892;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1384,114,0
chr1	53974987	rs10749691	G	T	4705.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=99;ExcessHet=3.9794;FS=2.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=1.24;SOR=0.850;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,37:99:99:852,0,1511
chr1	53986683	rs2316191	C	T	582.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.27;ReadPosRankSum=0.712;SOR=3.383;VQSLOD=18.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:54:184,0,54
chr1	53990321	rs541224	C	T	1474.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=-7.400e-01;SOR=0.910;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:278,0,314
chr1	53990715	rs492600	T	C	1467.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.802e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.78;ReadPosRankSum=-2.440e-01;SOR=1.498;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:217,0,351
chr1	54059996	rs193201988	G	A	2662.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340e-01;DB;DP=219;ExcessHet=3.0103;FS=3.799;MQ=60.00;MQRankSum=0.00;QD=12.16;ReadPosRankSum=-5.700e-02;SOR=0.757;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,101:219:99:2671,0,3259
chr1	54060016	rs35227000	G	C	11379.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.837e+00;DB;DP=225;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=1.60;SOR=0.733;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,224:225:99:7464,631,0
chr1	54060248	rs4307514	T	C	6572.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.35;DB;DP=127;ExcessHet=1.5490;FS=1.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=-8.480e-01;SOR=0.619;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4552,382,0
chr1	54258880	rs2273139	C	T	665.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=0.766;SOR=0.755;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,31:78:99:674,0,1128
chr1	54262163	rs9436477	A	G	107.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:114,0,69
chr1	54262253	.	TAA	T,TA	293	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.800e-01;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.484;SOR=1.828;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,4:9:59:181,59,76,74,0,71
chr1	54275152	rs12562843	G	C	68.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.319;SOR=0.446;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:77,0,33
chr1	54284551	rs72662323	T	C	98.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=1.37;SOR=0.495;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:107,0,138
chr1	54284814	rs12089209	C	T	1047.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=45;ExcessHet=3.9794;FS=6.967;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=1.09;SOR=1.388;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,24:45:99:696,0,501
chr1	54298297	rs72662336	T	C	520.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=40;ExcessHet=3.0103;FS=1.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-2.274e+00;SOR=1.201;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:529,0,484
chr1	54331715	rs1883452	C	G	1467.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.050e-01;DB;DP=16;ExcessHet=3.9794;FS=5.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=-7.320e-01;SOR=2.223;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:206,0,277
chr1	54331763	rs1883453	A	G	2269.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503e+00;DB;DP=28;ExcessHet=3.9794;FS=2.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.223;SOR=0.469;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:280,0,504
chr1	54343718	rs10788965	G	T	406.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.006e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=-6.520e-01;SOR=0.368;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	54344282	rs2272928	C	A	5353.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.352;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1396,134,0
chr1	54354658	rs2294508	T	G	1338.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;DB;DP=29;ExcessHet=6.9897;FS=2.837;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-2.050e-01;SOR=1.042;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:422,0,398
chr1	54356002	rs6702862	G	T	771.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044e+00;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=-2.810e-01;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:262,0,497
chr1	54356106	rs6656722	G	A	3950.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DB;DP=85;ExcessHet=6.9897;FS=14.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.25;SOR=1.504;VQSLOD=12.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,34:85:99:0|1:54356106_G_A:955,0,2063:54356106
chr1	54356113	rs61774833	C	T	1490.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.816e+00;DB;DP=93;ExcessHet=3.0103;FS=11.132;MQ=60.00;MQRankSum=0.00;QD=16.02;ReadPosRankSum=1.15;SOR=0.186;VQSLOD=16.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,57:93:99:1|0:54356106_G_A:1499,0,1299:54356106
chr1	54356341	rs6682112	C	G	2223.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881e+00;DB;DP=28;ExcessHet=6.9897;FS=2.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=-1.130e-01;SOR=1.153;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,14:28:99:0|1:54356341_C_G:520,0,965:54356341
chr1	54356347	rs6694562	A	T	2027.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.69;DB;DP=25;ExcessHet=6.9897;FS=9.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=0.367;SOR=2.265;VQSLOD=17.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,12:25:99:0|1:54356341_C_G:465,0,929:54356341
chr1	54356361	rs11206237	C	A	1109.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704e+00;DB;DP=23;ExcessHet=3.9794;FS=7.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=-1.016e+00;SOR=3.056;VQSLOD=16.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:364,0,419
chr1	54370264	rs2294511	A	T	2585.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=67;ExcessHet=3.9794;FS=0.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=1.93;SOR=0.758;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,41:67:99:1091,0,598
chr1	54375570	rs2235544	C	A	3059.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DB;DP=90;ExcessHet=3.9794;FS=3.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=1.81;SOR=0.962;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,53:90:99:1490,0,918
chr1	54375701	rs11206244	C	T	1036.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380e-01;DB;DP=39;ExcessHet=3.9794;FS=3.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=1.11;SOR=0.383;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:433,0,655
chr1	54395673	rs56847995	CA	C	629.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=34;ExcessHet=6.9897;FS=2.415;MQ=60.00;MQRankSum=0.00;QD=5.73;ReadPosRankSum=-6.930e-01;SOR=0.500;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,12:34:99:205,0,323
chr1	54474472	rs6672989	T	C	2360.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.671;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=1.11;SOR=4.712;VQSLOD=13.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:745,57,0
chr1	54476323	rs12036530	T	C	436.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.16;ReadPosRankSum=-8.420e-01;SOR=1.061;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr1	54477726	rs55766128	T	G	2100.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.77;SOR=8.189;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:649,54,0
chr1	54482915	rs11804837	G	A	660.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.560;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.02;ReadPosRankSum=1.35;SOR=2.303;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr1	54483694	rs34764952	C	T	5493.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.705e+00;DB;DP=63;ExcessHet=3.0103;FS=1.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=-5.820e-01;SOR=1.071;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1965,147,0
chr1	54507195	rs34028311	A	G	365.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.12;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr1	54561916	rs7555099	C	T	5249.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=59;ExcessHet=3.0103;FS=3.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.01;ReadPosRankSum=-7.730e-01;SOR=1.923;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1786,177,0
chr1	54605318	rs77544356	T	TGG	1638.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.470e-01;DB;DP=88;ExcessHet=3.9794;FS=10.470;MQ=60.00;MQRankSum=0.00;QD=9.58;ReadPosRankSum=-2.950e-01;SOR=1.027;VQSLOD=2.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:63,19:88:99:579,0,2512
chr1	54605319	rs36013100	G	GC	7504.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.649e+00;DB;DP=91;ExcessHet=3.0103;FS=17.974;MQ=60.00;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=1.98;SOR=0.418;VQSLOD=0.209;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,63:91:99:1591,0,876
chr1	54606804	rs3766465	C	T	9698.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=159;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.93;ReadPosRankSum=-6.700e-02;SOR=0.671;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,76:159:99:2158,0,2347
chr1	54607051	rs671103	A	G	21580.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.15;SOR=1.878;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,198:198:99:6681,595,0
chr1	54607157	rs671539	G	A	3624.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=51;ExcessHet=1.5490;FS=4.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.10;ReadPosRankSum=-7.080e-01;SOR=0.311;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:868,0,744
chr1	54607283	rs672067	T	C	1079.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=5.136;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
chr1	54610834	rs621833	T	C	220.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=7;ExcessHet=4.7712;FS=5.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.819;SOR=0.111;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:72:114,0,72
chr1	54618435	rs7528345	A	T	9231.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=173;ExcessHet=1.5490;FS=1.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.37;ReadPosRankSum=-8.960e-01;SOR=0.788;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,78:173:99:2073,0,2360
chr1	54637167	rs625643	T	C	1861.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=4.575;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:600,54,0
chr1	54656651	rs4927066	C	G	360.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=4.615;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr1	54661150	rs946448	C	T	1445.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.960e-01;DB;DP=114;ExcessHet=3.0103;FS=3.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-1.534e+00;SOR=0.653;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,59:114:99:1454,0,1389
chr1	54670658	rs36006392	CCTT	C	1038.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.64;ReadPosRankSum=2.39;SOR=1.552;VQSLOD=6.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,5:17:99:174,0,560
chr1	54681920	rs13571	G	C	6850.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=124;ExcessHet=3.9794;FS=4.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=1.42;SOR=0.928;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,51:124:99:1208,0,1917
chr1	54683856	rs15921	C	G	1186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;DB;DP=73;ExcessHet=3.9794;FS=0.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-6.970e-01;SOR=0.794;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,25:73:99:583,0,1177
chr1	54683925	rs6621	G	A	241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.89;ReadPosRankSum=0.347;SOR=0.693;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,10:35:99:250,0,710
chr1	54686374	rs612711	T	C	5898.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=139;ExcessHet=1.5490;FS=4.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=0.501;SOR=1.049;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,69:139:99:1846,0,1783
chr1	54686464	rs613158	C	T	3275.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=161;ExcessHet=3.9794;FS=0.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=0.592;SOR=0.643;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,76:161:99:1837,0,2167
chr1	54690954	rs3088379	T	C	1436.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DB;DP=56;ExcessHet=3.9794;FS=2.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-8.710e-01;SOR=0.512;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,20:56:99:496,0,1001
chr1	54694254	rs11206309	C	G	321.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e-01;DB;DP=21;ExcessHet=3.0103;FS=1.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-3.530e-01;SOR=0.307;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:330,0,399
chr1	54694750	rs61776465	A	G	210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=2.19;SOR=0.569;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:219,0,209
chr1	54706733	rs2297027	A	G	7000.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=144;ExcessHet=3.9794;FS=1.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=2.04;SOR=0.808;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,69:144:99:1713,0,1883
chr1	54717380	rs191260519	A	C	866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123e+00;DB;DP=57;ExcessHet=3.0103;FS=1.040;MQ=60.00;MQRankSum=0.00;QD=15.20;ReadPosRankSum=0.590;SOR=0.604;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,35:57:99:875,0,550
chr1	54717528	rs374080967	C	T	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491e+00;DB;DP=23;ExcessHet=3.0103;FS=12.352;MQ=60.00;MQRankSum=0.00;QD=14.88;ReadPosRankSum=1.00;SOR=0.025;VQSLOD=15.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:351,0,236
chr1	54870481	.	TG	T	48.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.38;ReadPosRankSum=-6.010e-01;SOR=0.283;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:57:57,0,135
chr1	54871566	.	ACCGC	A	78.61	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=25.70;SOR=2.303;VQSLOD=4.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	54871709	.	T	TCGCCGC	2282.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DP=34;ExcessHet=1.5490;FS=3.054;MQ=60.00;MQRankSum=0.00;QD=32.85;ReadPosRankSum=0.905;SOR=1.314;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1573,105,0
chr1	55014099	rs299874	C	T	1535.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e-01;DB;DP=61;ExcessHet=1.5490;FS=2.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=1.47;SOR=0.917;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,20:61:99:375,0,1650
chr1	55014100	rs3753011	G	A	1907.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-9.310e-01;SOR=0.716;VQSLOD=5.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,41:61:99:998,0,717
chr1	55014160	rs299872	C	T	816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DB;DP=53;ExcessHet=3.9794;FS=4.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=-5.360e-01;SOR=0.358;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,21:53:99:439,0,811
chr1	55064898	rs112040476	A	T	84.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=57.57;MQRankSum=0.566;NEGATIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=-1.614e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:92:92,0,123
chr1	55066759	rs1655534	T	C	237.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=3.358;MQ=60.00;MQRankSum=0.00;QD=16.95;ReadPosRankSum=0.00;SOR=0.061;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:55066759_T_C:114,0,527:55066759
chr1	55066789	rs10533779	CAT	C	433.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DB;DP=10;ExcessHet=3.9794;FS=2.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.486;SOR=0.245;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:55066759_T_C:150,0,716:55066759
chr1	55066813	rs74310754	C	CAT	705.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=20;ExcessHet=3.9794;FS=1.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.247;SOR=1.144;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,6:20:99:0|1:55066759_T_C:246,0,1062:55066759
chr1	55069790	rs892446	C	A	235.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=2.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-6.740e-01;SOR=0.238;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,77
chr1	55069986	rs746503	T	C	1237.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=49;ExcessHet=3.9794;FS=3.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.162;SOR=0.403;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,29:49:99:756,0,459
chr1	55071024	rs1655532	T	G	465.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.03;SOR=3.611;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	55072726	rs1616691	T	C	2078.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=52;ExcessHet=3.9794;FS=10.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.819;SOR=0.077;VQSLOD=18.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:969,0,686
chr1	55073396	rs12027962	G	A	181.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=8;ExcessHet=3.9794;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=1.29;SOR=0.039;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:102,0,198
chr1	55074463	rs1655530	T	C	344.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=58.00;MQRankSum=-7.650e-01;QD=20.24;ReadPosRankSum=0.619;SOR=1.061;VQSLOD=-9.092e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:138,0,184
chr1	55074840	rs1617287	T	A	4441.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443e+00;DB;DP=144;ExcessHet=3.9794;FS=0.937;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.674;SOR=0.622;VQSLOD=6.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,76:144:99:2197,0,2104
chr1	55074922	rs2289016	G	A	3903.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.392e+00;DB;DP=126;ExcessHet=3.9794;FS=0.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=1.25;SOR=0.605;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,56:126:99:1654,0,2142
chr1	55075452	rs1368883	G	A	2375.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DB;DP=87;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-4.300e-01;SOR=0.665;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,40:87:99:1068,0,1379
chr1	55077973	rs1655529	T	C	891.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=6.273;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:226,18,0
chr1	55078046	rs1655528	T	C	1076.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=1.74;SOR=5.283;VQSLOD=13.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:496,36,0
chr1	55080612	rs147772009	GGTGT	G,GGTGTGTGTGT	5892.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.073e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.37;ReadPosRankSum=2.11;SOR=0.690;VQSLOD=5.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,30,21:51:99:2119,881,843,1230,0,1166
chr1	55080629	rs1702015	A	G	6537.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.096e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.52;ReadPosRankSum=2.56;SOR=0.666;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,51:51:99:1|1:55080629_A_G:2303,156,0:55080629
chr1	55080635	rs1655525	G	A	1770.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=47;ExcessHet=3.9794;FS=2.944;MQ=60.00;MQRankSum=0.00;QD=15.80;ReadPosRankSum=0.098;SOR=0.426;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,19:47:99:0|1:55080629_A_G:691,0,1125:55080629
chr1	55080745	rs71712879	TAG	T	1384.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.840e-01;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.79;ReadPosRankSum=1.07;SOR=1.501;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:321,0,189
chr1	55085499	rs11206396	T	C	1023.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=0.397;SOR=0.791;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:502,0,304
chr1	55089316	rs2060387	A	C	483.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.64;MQRankSum=-4.330e-01;POSITIVE_TRAIN_SITE;QD=30.20;ReadPosRankSum=-4.270e-01;SOR=0.892;VQSLOD=1.16;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,12:16:99:0|1:55089316_A_C:492,0,230:55089316
chr1	55089317	rs2060386	T	C	483.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.62;MQRankSum=-3.330e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=-1.233e+00;SOR=1.179;VQSLOD=0.835;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,12:15:99:0|1:55089316_A_C:492,0,230:55089316
chr1	55100265	rs6691469	A	C	209.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,108
chr1	55100328	rs6588520	T	C	483.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357e+00;DB;DP=22;ExcessHet=3.9794;FS=2.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=1.06;SOR=0.217;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:294,0,380
chr1	55118566	rs1655520	C	G	8164.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=1.089;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2356,225,0
chr1	55119144	rs11206407	A	G	2287.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370e-01;DB;DP=106;ExcessHet=3.9794;FS=3.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.768;SOR=0.946;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,47:106:99:1165,0,1551
chr1	55119289	rs9332417	G	C	6761.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=94;ExcessHet=3.9794;FS=6.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=0.382;SOR=0.732;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,37:94:99:1075,0,1645
chr1	55119515	rs1655519	T	G	5658.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669e+00;DB;DP=227;ExcessHet=3.9794;FS=3.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-6.660e-01;SOR=0.479;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,118:227:99:2993,0,2825
chr1	55119546	rs1655518	A	G	21635.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.63;SOR=0.721;VQSLOD=5.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,215:215:99:6962,645,0
chr1	55129358	.	TA	T	81.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430e-01;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.70;ReadPosRankSum=1.07;SOR=0.446;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:68:0|1:55129358_TA_T:68,0,211:55129358
chr1	55129372	rs1529784	A	C	1017.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DB;DP=16;ExcessHet=3.9794;FS=1.250;MQ=59.81;MQRankSum=0.00;QD=19.94;ReadPosRankSum=-1.298e+00;SOR=1.002;VQSLOD=4.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:1|0:55129358_TA_T:280,0,330:55129358
chr1	55129374	rs138066572	AC	A	1017.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=16;ExcessHet=3.9794;FS=1.207;MQ=59.81;MQRankSum=0.00;QD=19.56;ReadPosRankSum=-1.121e+00;SOR=0.927;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:1|0:55129358_TA_T:280,0,330:55129358
chr1	55129564	rs1529783	T	C	807.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=0.516;SOR=1.085;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:338,0,315
chr1	55130598	rs11206410	T	G	701.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=-3.890e-01;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:88:88,0,410
chr1	55130931	rs2078273	C	T	1183.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.062e+00;DB;DP=48;ExcessHet=3.9794;FS=1.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-7.240e-01;SOR=0.452;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,21:48:99:489,0,835
chr1	55130946	rs6703113	G	C	997.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=36;ExcessHet=3.9794;FS=2.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-2.090e-01;SOR=0.439;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:396,0,647
chr1	55130972	rs471724	C	T	1825.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.562e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=0.607;SOR=0.770;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:796,63,0
chr1	55134379	rs627095	C	T	3039.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.529e+00;DB;DP=43;ExcessHet=3.9794;FS=1.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=1.73;SOR=0.482;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1552,129,0
chr1	55134487	rs478513	G	A	3717.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317e+00;DB;DP=140;ExcessHet=3.9794;FS=0.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=1.09;SOR=0.753;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,68:140:99:1540,0,1790
chr1	55136067	rs2251719	T	G	3363.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.15;DB;DP=42;ExcessHet=3.9794;FS=4.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=1.89;SOR=0.283;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1786,126,0
chr1	55136356	rs627226	C	T	1093.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=32;ExcessHet=3.9794;FS=5.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=0.365;SOR=2.352;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:601,0,371
chr1	55136529	rs480963	T	C	2115.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DB;DP=106;ExcessHet=3.9794;FS=1.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=1.43;SOR=0.585;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,56:106:99:1291,0,1106
chr1	55138563	rs11461510	A	AT	164.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=3.611;VQSLOD=6.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr1	55138673	rs564400	C	T	503.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.635;SOR=0.693;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:245,0,370
chr1	55139741	rs570218	A	G	3576.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=0.306;SOR=0.667;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1828,174,0
chr1	55139912	rs12122650	T	G	653.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=-2.430e-01;SOR=0.679;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:299,0,573
chr1	55144100	rs498831	A	G	436.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.9794;FS=5.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=1.07;SOR=3.477;VQSLOD=16.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:219,18,0
chr1	55145897	rs17396131	G	A	189.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.819;SOR=0.473;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:198,0,290
chr1	55160992	rs115685649	C	G	827.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040e+00;DB;DP=57;ExcessHet=3.0103;FS=5.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.21;SOR=1.653;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:836,0,802
chr1	55166842	rs1065173	C	T	1170.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=33;ExcessHet=3.9794;FS=5.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-1.440e-01;SOR=0.286;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:510,0,548
chr1	55167773	rs646356	T	A	15697.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=1.003;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,195:195:99:5585,583,0
chr1	55168084	rs644955	C	T	209.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=2;ExcessHet=1.5490;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=-1.465e+00;SOR=1.170;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	55172374	rs12026520	C	T	89.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-2.310e-01;SOR=0.527;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:98:98,0,200
chr1	55174819	rs12028701	C	T	1052.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430e-01;DB;DP=101;ExcessHet=3.0103;FS=3.864;MQ=59.94;MQRankSum=-1.190e+00;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-2.338e+00;SOR=1.085;VQSLOD=1.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,41:101:99:1061,0,1650
chr1	55174882	rs145713883	TTTTG	T	352.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=26;ExcessHet=3.0103;FS=2.098;MQ=60.00;MQRankSum=0.00;QD=13.55;ReadPosRankSum=0.079;SOR=1.547;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,10:26:99:361,0,745
chr1	55175322	rs757837	A	G	283.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.34;SOR=2.833;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:300,24,0
chr1	55182300	rs1147990	T	A	2408.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=75;ExcessHet=0.4576;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.11;ReadPosRankSum=-1.247e+00;SOR=1.484;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,74:75:99:2425,214,0
chr1	55197149	rs3815226	T	C	1190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.930e-01;DB;DP=96;ExcessHet=3.0103;FS=0.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-5.940e-01;SOR=0.555;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1199,0,1293
chr1	55199420	.	ATTTTTTTTTT	A,ATT	1671.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.77;DP=39;ExcessHet=3.9794;FS=0.000;MQ=59.62;MQRankSum=-5.600e-01;QD=23.55;ReadPosRankSum=0.152;SOR=0.865;VQSLOD=0.698;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,12,11:39:99:1268,458,395,405,0,294
chr1	55202987	rs1180932	T	C	301.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.57;SOR=4.407;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr1	55224131	rs2270004	T	C	2214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=126;ExcessHet=3.0103;FS=2.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=-7.700e-02;SOR=0.910;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,75:126:99:2223,0,1359
chr1	55224751	rs11577368	C	A	3143.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.920e-01;DB;DP=253;ExcessHet=3.0103;FS=4.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-6.620e-01;SOR=0.491;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,123:253:99:3152,0,3390
chr1	55225079	rs11587442	T	C	178.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=1.31;SOR=1.609;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:61:187,0,61
chr1	55247518	rs3815225	C	A	832.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=56;ExcessHet=3.0103;FS=1.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=2.31;SOR=0.430;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:841,0,709
chr1	55250684	rs2286202	A	G	408.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-5.010e-01;SOR=0.481;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:417,0,232
chr1	55250823	rs2286201	G	A	144.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.85;SOR=1.609;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	55251314	rs2270002	G	A	129.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=21;ExcessHet=3.0103;FS=2.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.16;ReadPosRankSum=-5.790e-01;SOR=1.845;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,5:21:99:138,0,475
chr1	55251512	rs2270000	C	T	169.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e-02;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-4.640e-01;SOR=0.892;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:178,0,137
chr1	55251689	rs586462	T	C	7158.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=1.532;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2692,243,0
chr1	55253346	rs2269999	G	A	1439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=71;ExcessHet=3.9794;FS=4.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-7.310e-01;SOR=1.017;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,24:71:99:525,0,1169
chr1	55253575	rs665118	T	C	4471.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.94;SOR=0.895;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1219,111,0
chr1	55253594	rs2269998	G	A	688.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=38;ExcessHet=3.0103;FS=1.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=1.29;SOR=0.711;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,22:38:99:697,0,423
chr1	55266191	rs74656880	G	T	1711.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.908e+00;DB;DP=151;ExcessHet=3.0103;FS=4.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.604;SOR=0.426;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,72:151:99:1720,0,2176
chr1	55266797	rs671108	G	C	3218.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.164e+00;DB;DP=319;ExcessHet=3.0103;FS=3.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.644;SOR=0.514;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:178,141:319:99:3227,0,4699
chr1	55272481	rs685648	T	C	1418.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.38;SOR=7.054;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:296,21,0
chr1	55273386	rs12404626	T	G	489.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116e+00;DB;DP=32;ExcessHet=3.0103;FS=1.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=0.662;SOR=1.127;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,20:32:99:498,0,342
chr1	55273422	rs671022	A	T	244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251e+00;DB;DP=23;ExcessHet=3.0103;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-1.033e+00;SOR=0.260;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:253,0,528
chr1	55277599	rs600499	T	C	15869.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.79;SOR=1.439;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4929,456,0
chr1	55279345	rs149536795	CCCGGCCT	C	705.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=2.584;VQSLOD=5.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	55279744	rs602067	G	T	135.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.842;SOR=1.329;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:56:144,0,56
chr1	55282556	rs733168	A	G	3294.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=34;ExcessHet=3.9794;FS=17.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=0.417;SOR=2.353;VQSLOD=11.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:478,0,618
chr1	55282979	rs4926657	A	C	738.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=1.34;SOR=2.147;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:136,0,26
chr1	55307501	rs41297871	A	G	1165.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=96;ExcessHet=3.0103;FS=1.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.224;SOR=0.641;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1174,0,1097
chr1	55317804	rs114267476	G	A	690.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=1.85;SOR=0.456;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,22:38:99:699,0,463
chr1	55318108	rs667222	C	T	2216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=75;ExcessHet=3.9794;FS=1.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=1.70;SOR=0.548;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,41:75:99:980,0,726
chr1	55318856	rs11428724	T	TG	68.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:46:77,0,46
chr1	55319008	rs631749	T	C	1684.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109e+00;DB;DP=46;ExcessHet=3.9794;FS=1.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.711;SOR=1.221;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:824,0,691
chr1	55319902	rs718265	A	G	7027.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=103;ExcessHet=3.9794;FS=1.572;MQ=59.97;MQRankSum=1.20;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=0.963;SOR=0.834;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,60:103:99:1541,0,1053
chr1	55319935	rs141309546	GA	G	1499.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=86;ExcessHet=3.9794;FS=0.672;MQ=59.93;MQRankSum=0.00;QD=10.48;ReadPosRankSum=0.218;SOR=0.798;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,37:86:99:887,0,1250
chr1	55330966	rs611057	T	C	3904.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.24;SOR=2.552;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1138,96,0
chr1	55341351	rs626452	G	T	521.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.00;ReadPosRankSum=-4.430e-01;SOR=0.906;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:159,0,223
chr1	55352126	.	C	A	703.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139e+00;DP=38;ExcessHet=3.0103;FS=1.652;MQ=60.00;MQRankSum=0.00;QD=18.51;ReadPosRankSum=0.621;SOR=0.331;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,24:38:99:712,0,397
chr1	55446664	rs2253467	G	C	12885.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612e+00;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=-2.082e+00;SOR=0.766;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,52:96:99:0|1:55446664_G_C:2073,0,2671:55446664
chr1	55446671	rs2253466	C	T	13870.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937e+00;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.96;ReadPosRankSum=-1.962e+00;SOR=0.685;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,59:109:99:0|1:55446664_G_C:2217,0,2831:55446664
chr1	55446697	rs2253465	G	A	15582.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=-1.146e+00;SOR=0.604;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,97:174:99:2653,0,1891
chr1	55451564	rs2500324	C	T	1766.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.990e-01;DB;DP=11;ExcessHet=3.0103;FS=6.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.72;ReadPosRankSum=1.60;SOR=3.830;VQSLOD=13.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,227
chr1	55457710	rs2500326	G	A	14484.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=175;ExcessHet=3.0103;FS=4.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=-1.684e+00;SOR=1.134;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,75:175:99:1944,0,2536
chr1	55457815	rs2495513	C	T	7114.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=88;ExcessHet=3.0103;FS=9.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=0.541;SOR=1.478;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,37:88:99:894,0,1368
chr1	55464743	rs2500340	T	C	3439.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=41;ExcessHet=3.0103;FS=1.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.91;ReadPosRankSum=1.08;SOR=1.096;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:629,0,639
chr1	55464790	rs2500341	C	G	5725.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DB;DP=86;ExcessHet=3.0103;FS=1.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=0.683;SOR=0.864;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1095,0,1067
chr1	55472365	rs4927186	G	A	70.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.83;SOR=2.303;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	55473043	rs6687801	G	A	638.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=20;ExcessHet=3.9794;FS=1.275;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.606;SOR=1.105;VQSLOD=5.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:291,0,246
chr1	55474262	rs33938617	G	A	1923.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=126;ExcessHet=3.0103;FS=3.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-1.050e-01;SOR=0.647;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,67:126:99:1932,0,1587
chr1	55474325	rs6682884	A	C	3102.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=122;ExcessHet=3.9794;FS=2.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.49;SOR=0.593;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,61:122:99:1591,0,1606
chr1	55474476	rs4339899	C	G	2255.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DB;DP=76;ExcessHet=3.9794;FS=0.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.26;SOR=0.750;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,33:76:99:955,0,1268
chr1	55474679	rs2864124	A	G	412.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.864;SOR=0.307;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:172,0,133
chr1	55505732	rs2495482	A	G	7370.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.05;SOR=1.356;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2051,186,0
chr1	55516781	rs599037	G	T	10485.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=84;ExcessHet=3.0103;FS=4.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=1.14;SOR=1.167;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,83:84:99:2504,240,0
chr1	55517861	rs613855	C	G	2317.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=45;ExcessHet=1.5490;FS=2.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=2.10;SOR=1.044;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1523,134,0
chr1	55517883	rs624612	C	G	2105.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.64;SOR=0.734;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,30:54:99:983,0,695
chr1	55517940	rs11800231	G	A	1133.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.426;SOR=0.620;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,49:108:99:1142,0,1458
chr1	55518093	rs11800243	G	A	994.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=93;ExcessHet=3.0103;FS=0.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-1.100e-01;SOR=0.602;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,36:93:99:1003,0,1483
chr1	55518160	rs11806638	C	A	689.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.209e+00;DB;DP=48;ExcessHet=3.0103;FS=4.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.25;SOR=0.294;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,21:48:99:698,0,1071
chr1	55518166	rs625619	G	A	4968.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=49;ExcessHet=3.0103;FS=1.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=-1.122e+00;SOR=0.824;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:890,0,781
chr1	55518190	rs45597632	AC	A	1056.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241e+00;DB;DP=44;ExcessHet=3.9794;FS=6.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.659;SOR=0.448;VQSLOD=6.02;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,23:44:99:570,0,508
chr1	55518287	rs11800265	G	A	1150.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411e+00;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=1.72;SOR=0.671;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1159,0,930
chr1	55518316	rs2483205	C	T	4754.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.040e-01;DB;DP=90;ExcessHet=3.9794;FS=3.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.997;SOR=0.988;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,54:90:99:1337,0,824
chr1	55518467	rs2495477	A	G	866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-8.030e-01;SOR=0.634;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,33:60:99:875,0,602
chr1	55518528	rs494198	C	A	3318.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=36;ExcessHet=3.0103;FS=4.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.86;ReadPosRankSum=1.06;SOR=1.210;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,35:36:96:980,96,0
chr1	55518622	rs45613943	T	C	145.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=-3.280e-01;SOR=0.941;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:154,0,106
chr1	55521313	rs472495	G	T	258.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.36;ReadPosRankSum=0.00;SOR=1.447;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:74,0,33
chr1	55521899	rs201349983	GGGGCGGA	G	118.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.20;SOR=2.833;VQSLOD=6.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr1	55522741	rs149093957	C	CCGGT,CCTGT	676.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.20;SOR=5.421;VQSLOD=6.51;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,5:7:52:294,186,173,72,0,52
chr1	55523033	rs509504	A	G	8757.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=0.737;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3506,345,0
chr1	55523361	rs533375	A	G	578.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.08;SOR=1.911;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr1	55523483	rs534347	C	T	1414.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=3.026;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:335,27,0
chr1	55523984	rs584626	C	T	1619.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.99;SOR=1.455;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:302,27,0
chr1	55524116	rs585131	C	T	2892.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=1.218;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:748,69,0
chr1	55524197	rs540796	A	G	3208.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=0.896;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:55524197_A_G:1076,78,0:55524197
chr1	55524237	rs562556	G	A	2850.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=1.528;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:55524197_A_G:859,60,0:55524197
chr1	55524303	rs374603772	C	T	213.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.77;ReadPosRankSum=-8.240e-01;SOR=0.446;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:90:222,0,90
chr1	55525399	rs45439391	C	T	440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620e-01;DB;DP=33;ExcessHet=3.0103;FS=5.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.00;SOR=2.088;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,15:33:99:0|1:55525399_C_T:449,0,711:55525399
chr1	55525400	rs483462	G	A	2691.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.541e+00;DB;DP=32;ExcessHet=3.0103;FS=2.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=-3.420e-01;SOR=0.326;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,18:32:99:1|0:55525399_C_T:500,0,569:55525399
chr1	55527323	rs630431	G	A	7646.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379e+00;DB;DP=114;ExcessHet=3.0103;FS=0.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=-2.700e-01;SOR=0.639;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,54:114:99:1444,0,1646
chr1	55527479	rs631220	A	G	1177.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=5.421;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	55529187	rs505151	G	A	10523.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=31.89;SOR=1.320;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4187,402,0
chr1	55538385	rs654674	T	C	3733.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=2.584;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:98:1093,98,0
chr1	55541174	rs487230	A	G	7891.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=1.112;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2288,204,0
chr1	55541338	rs60526291	AC	A	1912.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.15;SOR=4.664;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:55541338_AC_A:447,30,0:55541338
chr1	55541340	rs57413420	ACCACCACC	A	1912.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=4.664;VQSLOD=5.77;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:55541338_AC_A:447,30,0:55541338
chr1	55545515	rs550336	C	G	1939.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=1.609;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:545,54,0
chr1	55546895	rs683880	T	C	1950.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.10;SOR=7.743;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:372,27,0
chr1	55555285	rs548852	G	A	2109.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=2.722;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:595,48,0
chr1	55557540	rs667353	T	C	1022.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.10;ReadPosRankSum=1.04;SOR=3.912;VQSLOD=15.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,103
chr1	55557859	rs34673217	A	ATT	3990.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=23.03;SOR=3.334;VQSLOD=5.35;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:55557859_A_ATT:790,54,0:55557859
chr1	55557864	rs3736992	C	T	3714.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.89;QD=28.72;SOR=3.834;VQSLOD=4.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:55557859_A_ATT:720,48,0:55557859
chr1	55558661	rs585203	A	G	2002.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.29;SOR=3.952;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:689,57,0
chr1	55560796	rs503495	T	C	1316.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.27;SOR=5.728;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:254,21,0
chr1	55562125	rs580485	G	T	1850.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.06;SOR=2.925;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:447,39,0
chr1	55566411	rs2307833	TTAGTC	T	3189.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.00;SOR=5.728;VQSLOD=5.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1069,72,0
chr1	55567143	rs1165282	T	C	1563.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.76;SOR=5.084;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:420,33,0
chr1	55567410	rs615652	A	G	5569.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=1.543;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1685,162,0
chr1	55571592	rs5774214	C	CT	431.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=4.977;VQSLOD=7.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	55571953	rs41301092	T	C	172.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=14;ExcessHet=3.0103;FS=5.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.647;SOR=2.546;VQSLOD=19.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:181,0,227
chr1	55572867	rs594226	G	A	7962.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=1.508;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2494,242,0
chr1	55575670	rs534741	A	C	1758.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=6.184;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:290,24,0
chr1	55587394	rs641995	T	C	413.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=4.804;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	55590787	rs2307832	CTT	C	525.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=5.136;VQSLOD=6.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	55590828	rs502793	G	A	700.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.40;SOR=5.892;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:254,18,0
chr1	55614036	rs34030121	CAT	C	2085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=5.464;VQSLOD=7.26;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:630,42,0
chr1	55619422	rs1165230	G	A	1272.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.45;SOR=5.549;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:340,27,0
chr1	55638075	rs1165222	G	A	6284.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=30.66;SOR=1.259;VQSLOD=5.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1690,161,0
chr1	55643837	rs11350615	TA	T	3806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=3.932;VQSLOD=6.11;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1135,99,0
chr1	55680320	rs147362305	TTC	T	34.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271e+00;DB;DP=50;ExcessHet=3.0103;FS=2.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=0.69;ReadPosRankSum=0.518;SOR=0.154;VQSLOD=6.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,5:50:43:43,0,1576
chr1	57139824	rs2796534	G	A	536.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=0.414;SOR=1.022;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:96:96,0,165
chr1	57185818	rs857141	A	G	10176.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=81;ExcessHet=3.0103;FS=0.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.56;ReadPosRankSum=0.132;SOR=0.637;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1201,0,1019
chr1	57219631	rs11404547	G	GA	1459.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=-1.157e+00;SOR=0.755;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:138,0,230
chr1	57221553	rs1774808	G	T	5935.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014e+00;DB;DP=77;ExcessHet=3.0103;FS=0.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=0.547;SOR=0.808;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,35:77:99:0|1:57221553_G_T:1295,0,2095:57221553
chr1	57221554	rs1738401	A	G	5935.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=77;ExcessHet=3.0103;FS=0.658;MQ=60.00;MQRankSum=0.00;QD=32.44;ReadPosRankSum=0.573;SOR=0.769;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,35:77:99:0|1:57221553_G_T:1295,0,2095:57221553
chr1	57224460	rs857103	G	C	7919.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DB;DP=84;ExcessHet=3.0103;FS=1.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=0.968;SOR=0.853;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,32:84:99:823,0,1382
chr1	57232805	rs857093	T	C	184.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:77,0,31
chr1	57252615	rs2275733	A	T	677.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=-1.097e+00;SOR=0.465;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:277,0,176
chr1	57320487	rs114991676	C	G	230.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=39;ExcessHet=3.0103;FS=1.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.90;ReadPosRankSum=-1.287e+00;SOR=1.314;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,10:39:99:239,0,724
chr1	57333311	rs116201358	C	A	1064.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.093e+00;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.520;SOR=0.677;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1073,0,1150
chr1	57340727	rs652785	C	A	1778.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700e-01;DB;DP=50;ExcessHet=6.9897;FS=3.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.216;SOR=0.995;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,12:50:99:245,0,1069
chr1	57340860	rs2269118	G	A	452.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=10;ExcessHet=3.9794;FS=1.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-9.090e-01;SOR=1.460;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:19:227,0,19
chr1	57347244	rs116129675	C	G	863.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799e+00;DB;DP=57;ExcessHet=3.0103;FS=1.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=-1.051e+00;SOR=0.527;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,33:57:99:872,0,683
chr1	57372591	rs619545	C	T	2733.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.118;DB;DP=35;ExcessHet=3.0103;FS=5.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=-1.452e+00;SOR=0.188;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1157,105,0
chr1	57374000	rs947656	A	G	205.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-02;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.225;SOR=1.179;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:214,0,225
chr1	57378149	rs1620075	G	T	3080.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=170;ExcessHet=3.0103;FS=4.507;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=-1.419e+00;SOR=1.040;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:88,82:170:99:0|1:57378149_G_T:3089,0,4129:57378149
chr1	57378150	rs1620073	C	T	3080.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-03;DB;DP=169;ExcessHet=3.0103;FS=3.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=-1.317e+00;SOR=1.014;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:88,81:169:99:0|1:57378149_G_T:3089,0,4129:57378149
chr1	57378198	rs1754533	T	C	1899.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DB;DP=172;ExcessHet=3.0103;FS=1.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=1.45;SOR=0.584;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,80:172:99:1908,0,2211
chr1	57378334	rs1754534	T	G	687.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=35;ExcessHet=3.0103;FS=6.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=-1.426e+00;SOR=2.833;VQSLOD=17.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:696,0,479
chr1	57378413	rs623077	T	C	420.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=1.11;SOR=1.179;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr1	57383315	rs1342440	G	C	921.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=78;ExcessHet=3.0103;FS=5.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.378;SOR=1.197;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,34:78:99:930,0,1177
chr1	57395020	rs2795	A	G	121.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.73;ReadPosRankSum=0.253;SOR=0.616;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:88:88,0,144
chr1	57395251	rs605648	T	C	4138.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.320e-01;DB;DP=68;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=1.17;SOR=0.706;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2026,204,0
chr1	57395321	rs76151167	C	T	653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DB;DP=51;ExcessHet=3.0103;FS=1.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=1.72;SOR=0.500;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:662,0,671
chr1	57395421	rs653804	C	G	512.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087e+00;DB;DP=13;ExcessHet=3.9794;FS=3.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-8.930e-01;SOR=0.252;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:238,0,99
chr1	57397183	rs684304	T	C	66.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=-9.670e-01;SOR=2.225;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:75,0,31
chr1	57397301	rs683824	G	A	795.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.772;SOR=0.619;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:437,0,492
chr1	57397733	rs78678594	C	T	206.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=-4.050e-01;SOR=1.085;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,6:10:99:0|1:57397733_C_T:215,0,150:57397733
chr1	57397738	rs612563	G	C	114.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.108;SOR=0.412;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:1|0:57397733_C_T:123,0,240:57397733
chr1	57399250	rs115468209	C	T	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-01;DB;DP=32;ExcessHet=3.0103;FS=1.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=1.36;SOR=1.112;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:286,0,545
chr1	57406866	rs79920589	C	T	137.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=1.37;SOR=0.941;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:146,0,112
chr1	57415594	rs661449	A	G	305.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.59;ReadPosRankSum=1.38;SOR=2.303;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:250,18,0
chr1	57417633	rs138791380	G	GGGATGTGTCCAAGGTCACACA	856.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.320e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:33:495,33,0
chr1	57422218	rs7541538	T	C	707.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=-5.240e-01;SOR=1.781;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:193,15,0
chr1	57422484	rs1013579	C	T	17227.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=0.949;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5500,521,0
chr1	57425474	rs683916	A	T	106.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=1.179;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	57489540	rs55847018	C	G	189.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DB;DP=20;ExcessHet=3.0103;FS=4.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=0.436;SOR=1.863;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:198,0,358
chr1	57498844	rs10666048	T	TACAC,TACACAC	505.71	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=-2.210e-01;SOR=1.445;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,2:9:39:378,66,39,231,0,206
chr1	57528772	rs1261611	A	G	2286.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.10;SOR=3.334;VQSLOD=19.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:682,51,0
chr1	57537062	rs12754054	G	A	1903.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.312e+00;DB;DP=25;ExcessHet=3.9794;FS=2.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=1.06;SOR=0.450;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:810,75,0
chr1	57538409	rs12759721	C	T	142.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=0.967;SOR=1.609;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr1	57602334	rs564665	G	A	1570.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=1.036;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1587,156,0
chr1	57602383	rs563921	T	C	979.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=0.869;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:996,105,0
chr1	58939335	rs338232	C	T	754.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.45;SOR=5.892;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr1	58939634	rs12407003	G	A	3708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=139;ExcessHet=3.9794;FS=0.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-3.430e-01;SOR=0.658;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,63:139:99:1600,0,1791
chr1	59004451	rs201567964	T	G	156.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=17;ExcessHet=3.0103;FS=2.197;MQ=60.00;MQRankSum=0.00;QD=9.19;ReadPosRankSum=-1.074e+00;SOR=1.402;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:165,0,264
chr1	59004979	rs902925	C	T	7651.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=2.557;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1861,172,0
chr1	59125515	rs12737926	C	T	61.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=-9.670e-01;SOR=2.225;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:70,0,35
chr1	59125894	rs12092264	A	G	1098.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.630e-01;DB;DP=24;ExcessHet=3.9794;FS=1.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=0.198;SOR=0.386;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,13:24:99:0|1:59125887_T_G:486,0,738:59125887
chr1	59125899	rs12082192	G	A	979.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=21;ExcessHet=3.9794;FS=1.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=0.873;SOR=0.457;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,11:21:99:0|1:59125887_T_G:456,0,705:59125887
chr1	59126616	rs232778	A	G	522.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.524;SOR=1.828;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:99,0,65
chr1	59126676	rs232779	A	C	1385.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=0.496;SOR=1.654;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:122,0,335
chr1	59127024	rs4912364	T	G	2524.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=70;ExcessHet=3.9794;FS=0.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.408;SOR=0.757;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,31:70:99:849,0,1048
chr1	59131311	rs232790	G	T	5518.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DB;DP=53;ExcessHet=3.9794;FS=3.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=0.481;SOR=0.964;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:760,0,773
chr1	59131481	rs232791	C	T	329.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.38;ReadPosRankSum=-3.610e-01;SOR=0.330;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,114
chr1	59134586	rs11207284	G	C	2304.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=95;ExcessHet=3.9794;FS=2.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.171;SOR=0.867;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1238,0,1307
chr1	59134607	rs57822474	C	CAG	12142.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450e-01;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.79;ReadPosRankSum=-1.322e+00;SOR=0.677;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,54:97:99:2118,0,1792
chr1	59137783	rs539141	A	G	1313.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=20;ExcessHet=6.9897;FS=3.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.122;SOR=1.497;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:401,0,267
chr1	59139223	rs2064370	C	G	2692.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930e-01;DB;DP=78;ExcessHet=6.9897;FS=6.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-2.300e-02;SOR=0.393;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,35:78:99:776,0,1044
chr1	59139537	rs11207287	G	A	226.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=10;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=1.47;SOR=0.495;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:103,0,149
chr1	59142713	rs579110	T	C	3977.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089e+00;DB;DP=104;ExcessHet=6.9897;FS=0.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.026;SOR=0.647;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,56:104:99:1352,0,1190
chr1	59147420	rs11207292	G	A	1254.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=30;ExcessHet=6.9897;FS=0.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=1.19;SOR=0.565;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:398,0,397
chr1	59147926	rs12139511	T	C	3432.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=76;ExcessHet=6.9897;FS=2.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.172;SOR=0.872;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,42:76:99:1166,0,912
chr1	59150941	rs2206764	G	A	2412.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-02;DB;DP=36;ExcessHet=3.9794;FS=2.503;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=-8.000e-02;SOR=0.976;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:387,0,500
chr1	59150997	rs5774421	TA	T	506.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572e+00;DB;DP=10;ExcessHet=6.9897;FS=2.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=0.597;SOR=0.319;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:76:126,0,76
chr1	59156155	rs12076049	C	T	2104.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.779e+00;DB;DP=57;ExcessHet=6.9897;FS=4.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-3.610e-01;SOR=0.434;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,28:57:99:676,0,758
chr1	59158632	rs12097333	T	C	3188.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=57;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.189;SOR=0.687;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,39:57:99:1180,0,449
chr1	59160724	rs66629118	TA	T	658.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=12;ExcessHet=6.9897;FS=9.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=-7.800e-02;SOR=2.286;VQSLOD=3.75;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:71:0|1:59160724_TA_T:71,0,324:59160724
chr1	59160735	rs2473746	A	G	1706.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590e-01;DB;DP=13;ExcessHet=6.9897;FS=5.549;MQ=60.00;MQRankSum=0.00;QD=18.97;ReadPosRankSum=0.085;SOR=0.245;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,9:13:99:1|0:59160724_TA_T:366,0,141:59160724
chr1	59160742	rs2064373	A	C	1283.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=16;ExcessHet=3.9794;FS=1.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=0.397;SOR=0.941;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,11:16:99:1|0:59160724_TA_T:434,0,174:59160724
chr1	59160885	rs2064374	A	G	2078.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=40;ExcessHet=6.9897;FS=1.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=1.10;SOR=0.588;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:428,0,504
chr1	59160905	rs115684273	A	G	443.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-1.216e+00;SOR=0.784;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:452,0,413
chr1	59160982	rs34580410	ATACT	A	1108.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=18;ExcessHet=6.9897;FS=1.472;MQ=60.00;MQRankSum=0.00;QD=17.89;ReadPosRankSum=-6.850e-01;SOR=1.082;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:18:99:306,0,396
chr1	59165838	rs11207297	T	G	1583.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=50;ExcessHet=3.9794;FS=1.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-6.900e-01;SOR=0.514;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:748,0,712
chr1	59248813	rs2760499	G	C	12574.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=31.00;SOR=2.640;VQSLOD=4.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4518,376,0
chr1	59365079	rs2492323	G	T	506.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=40;ExcessHet=3.0103;FS=3.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-4.490e-01;SOR=0.324;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:515,0,598
chr1	59787350	rs835409	T	G	1268.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.270e-01;DB;DP=59;ExcessHet=3.9794;FS=1.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-5.870e-01;SOR=0.957;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:711,0,872
chr1	59844471	rs835435	G	A	1885.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DB;DP=89;ExcessHet=3.9794;FS=0.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-3.670e-01;SOR=0.783;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,38:89:99:790,0,1301
chr1	60199133	rs139679887	G	GTTTT	471.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=10;ExcessHet=6.9897;FS=5.071;MQ=60.00;MQRankSum=0.00;QD=16.86;ReadPosRankSum=-4.800e-01;SOR=0.126;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:143,0,242
chr1	60223460	rs590704	A	G	1890.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.684;SOR=0.801;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:357,0,449
chr1	60228310	rs10626387	T	TTC	8811.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.57;SOR=0.788;VQSLOD=5.65;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2308,156,0
chr1	60280749	rs113730234	GT	G	32292.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=268;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.05;SOR=0.938;VQSLOD=4.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,268:268:99:10834,807,0
chr1	60299820	rs618716	C	G	6705.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=30.48;SOR=0.888;VQSLOD=4.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2075,206,0
chr1	60314703	rs2294946	T	C	508.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.680e-01;DB;DP=27;ExcessHet=3.9794;FS=2.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.490;SOR=0.368;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:199,0,482
chr1	60373775	rs1155002	T	C	638.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.96;SOR=2.584;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:258,18,0
chr1	60466814	rs626251	T	C	3750.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.74;ReadPosRankSum=-5.220e-01;SOR=0.677;VQSLOD=6.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,25:59:99:654,0,856
chr1	60466911	rs34585993	ACAG	A	4974.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=65;ExcessHet=3.9794;FS=1.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=0.926;SOR=0.790;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2884,196,0
chr1	60467133	rs586404	A	G	321.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=2.833;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	60474375	rs17119974	C	T	3408.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.780e-01;DB;DP=100;ExcessHet=6.9897;FS=3.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-7.140e-01;SOR=0.535;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,56:100:99:1277,0,1020
chr1	60475930	rs616949	C	G	2425.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=37;ExcessHet=3.9794;FS=2.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=1.15;SOR=0.963;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1257,111,0
chr1	60503883	rs11300572	TA	T	202.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.89;SOR=2.584;VQSLOD=5.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:219,21,0
chr1	60505578	rs680390	A	G	1647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.09;SOR=2.437;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:543,51,0
chr1	61331160	.	CTT	C	273.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=11;ExcessHet=3.9794;FS=2.144;MQ=59.60;MQRankSum=-2.300e-01;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=-1.420e-01;SOR=1.542;VQSLOD=1.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:11:99:120,0,101
chr1	61743160	rs332827	G	A	2863.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657e+00;DB;DP=71;ExcessHet=6.9897;FS=11.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-7.620e-01;SOR=0.649;VQSLOD=18.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,51:71:99:1332,0,450
chr1	61743337	rs11207719	G	T	302.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-9.030e-01;SOR=0.804;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:311,0,446
chr1	61817946	rs34094870	G	A	143.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.812;SOR=0.307;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:73:100,0,73
chr1	61824450	.	C	T	32.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.88;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:40,0,34
chr1	61892301	rs5774558	T	TG	9855.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=1.183;VQSLOD=6.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,81:81:99:3020,246,0
chr1	62149237	rs12134205	C	G	473.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=53;ExcessHet=3.0103;FS=3.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=-1.652e+00;SOR=1.292;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,19:53:99:482,0,816
chr1	62160542	rs1151765	A	G	2080.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=27.05;SOR=3.990;VQSLOD=4.65;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,6:6:18:207,18,0
chr1	62175340	rs1151770	C	T	65.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.86;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:73,0,35
chr1	62231924	rs141761262	T	TTGA	1551.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.19;SOR=3.258;VQSLOD=5.85;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:810,54,0
chr1	62232031	rs1286835	C	T	7089.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.30;SOR=1.034;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2368,254,0
chr1	62232130	rs11207827	T	C	1967.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=1.573;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1984,189,0
chr1	62329885	rs35853578	AT	A	425.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=0.821;SOR=0.917;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,4:15:80:80,0,297
chr1	62330080	rs2799627	T	G	7399.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.05;SOR=0.903;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2284,186,0
chr1	62330353	rs2275859	G	A	1070.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DB;DP=127;ExcessHet=3.0103;FS=0.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=0.944;SOR=0.804;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,49:127:99:1079,0,1880
chr1	62340726	rs12096192	G	A	193.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=1.65;SOR=0.693;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:73:106,0,73
chr1	62340855	rs12753462	G	C	1169.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082e+00;DB;DP=26;ExcessHet=3.9794;FS=3.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=1.32;SOR=0.321;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:443,0,406
chr1	62341157	rs4598521	T	C	921.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.116;SOR=1.609;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:245,0,432
chr1	62350123	.	GTTTTTT	G,GTTT	1935.44	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.00;DP=20;ExcessHet=3.0103;FS=6.981;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.81;ReadPosRankSum=0.909;SOR=2.743;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,9,7:20:99:474,132,395,257,0,257
chr1	62365217	rs1412622	C	T	2799.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=44;ExcessHet=3.0103;FS=2.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=1.74;SOR=1.265;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1427,132,0
chr1	62365428	rs5774578	G	GA	1585.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=0.564;SOR=0.862;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:499,42,0
chr1	62365461	rs10889269	G	A	421.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=1.34;SOR=0.299;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:182,0,128
chr1	62366878	rs2499002	T	G	252.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-3.660e-01;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,181
chr1	62374267	rs2151122	T	C	494.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=6;ExcessHet=6.9897;FS=3.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.063;SOR=2.080;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:68:148,0,68
chr1	62380124	rs4915789	A	G	1826.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.176e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=-1.280e-01;SOR=0.672;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:550,48,0
chr1	62380223	rs11585422	G	T	2743.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.770e-01;DB;DP=55;ExcessHet=1.5490;FS=1.753;MQ=59.95;MQRankSum=-7.690e-01;POSITIVE_TRAIN_SITE;QD=21.61;ReadPosRankSum=-8.550e-01;SOR=0.492;VQSLOD=2.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1656,165,0
chr1	62380270	rs1134766	C	T	2705.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=61;ExcessHet=1.5490;FS=2.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=-1.620e-01;SOR=0.965;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,24:61:99:543,0,895
chr1	62380298	rs1056513	G	A	442.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=51;ExcessHet=3.0103;FS=4.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=0.640;SOR=1.508;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,17:51:99:451,0,802
chr1	62393394	rs2251182	A	G	10041.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.581;DB;DP=124;ExcessHet=3.0103;FS=1.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=-2.770e-01;SOR=0.843;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3563,371,0
chr1	62417951	.	A	AG	1505.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.19;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.67;MQRankSum=-1.143e+00;QD=30.72;ReadPosRankSum=0.389;SOR=0.756;VQSLOD=0.493;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:57:726,57,0
chr1	62417952	rs34366135	A	AG,AGAGAGAGAGAGAGAGAG	1416.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.908e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=-1.186e+00;QD=31.48;ReadPosRankSum=0.580;SOR=1.414;VQSLOD=0.081;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,6:9:99:697,267,241,156,0,110
chr1	62483401	rs58692636	CA	C	33.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.69;MQRankSum=0.00;QD=3.34;ReadPosRankSum=0.578;SOR=0.321;VQSLOD=5.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,1:6:2:2,0,164
chr1	62483415	rs140898379	A	G	649.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.72;MQRankSum=0.00;QD=24.97;ReadPosRankSum=0.812;SOR=0.247;VQSLOD=4.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:99:176,0,232
chr1	62483599	rs34726576	G	A	2560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DB;DP=120;ExcessHet=3.9794;FS=3.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.172;SOR=0.938;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,53:120:99:1100,0,1558
chr1	62516401	rs58923469	CAG	C	66.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.431;SOR=0.446;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,117
chr1	62516683	rs2498982	G	C	4931.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180e-01;DB;DP=148;ExcessHet=6.9897;FS=1.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-7.430e-01;SOR=0.626;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,67:148:99:1473,0,2009
chr1	62579523	rs1475565	C	T	424.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.69;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr1	62579672	rs1475564	A	C	3272.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=48;ExcessHet=3.9794;FS=0.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=1.11;SOR=0.591;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:536,0,770
chr1	62579823	rs1475563	G	A	7663.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=234;ExcessHet=1.5490;FS=1.239;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=-1.319e+00;SOR=0.783;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,92:234:99:2197,0,3420
chr1	62583178	rs202208470	TA	T	40.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=20.32;SOR=2.303;VQSLOD=1.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr1	62587014	rs4019806	T	TA	2513.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=43;ExcessHet=3.9794;FS=3.141;MQ=60.00;MQRankSum=0.00;QD=19.04;ReadPosRankSum=-4.640e-01;SOR=0.377;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,18:43:99:347,0,520
chr1	62593893	rs2481664	T	C	1120.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.056e+00;DB;DP=15;ExcessHet=6.9897;FS=2.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=0.063;SOR=0.201;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:306,0,161
chr1	62594593	rs2476194	C	T	3199.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=98;ExcessHet=6.9897;FS=0.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-1.170e-01;SOR=0.634;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,41:98:99:992,0,1407
chr1	62614164	rs61777734	G	A	991.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709e+00;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-4.510e-01;SOR=0.593;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:275,0,486
chr1	62644118	rs2481703	A	G	3842.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=2.480;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1833,156,0
chr1	62644172	rs61775686	A	G	857.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.76;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=0.429;SOR=0.656;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:352,0,401
chr1	62644247	rs2481701	T	G	207.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.319;SOR=1.863;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:51:215,0,51
chr1	62672546	rs2457829	G	A	3753.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DB;DP=33;ExcessHet=3.9794;FS=0.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=-5.950e-01;SOR=0.805;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:464,0,442
chr1	62703977	rs34591898	G	A	520.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=56;ExcessHet=3.0103;FS=1.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=0.975;SOR=0.947;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:529,0,819
chr1	62704134	rs41289438	A	G	1728.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=59;ExcessHet=3.9794;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=2.23;SOR=0.544;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,26:59:99:739,0,854
chr1	62704304	.	C	CTT	252.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=9;ExcessHet=3.9794;FS=8.921;MQ=60.00;MQRankSum=0.00;QD=19.40;ReadPosRankSum=0.366;SOR=3.841;VQSLOD=1.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,4:9:99:194,0,184
chr1	62704325	rs112401181	G	T	381.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=11;ExcessHet=3.9794;FS=8.113;MQ=60.00;MQRankSum=0.00;QD=22.46;ReadPosRankSum=0.723;SOR=3.442;VQSLOD=12.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:277,0,173
chr1	62712999	rs111297754	TG	T	472.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;DB;DP=14;ExcessHet=6.9897;FS=5.909;MQ=60.00;MQRankSum=0.00;QD=10.28;ReadPosRankSum=1.24;SOR=2.419;VQSLOD=4.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,4:14:89:89,0,284
chr1	62713224	rs2941679	C	G	12024.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=0.904;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4164,405,0
chr1	62713246	rs10889315	G	A	2977.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-02;DB;DP=142;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-8.660e-01;SOR=0.708;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,67:142:99:1454,0,1699
chr1	62713469	rs10789108	T	C	320.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.328;SOR=0.446;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:92:92,0,142
chr1	62728596	rs2765247	T	C	1216.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=6.804;VQSLOD=24.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr1	62728628	rs59025845	C	T	337.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=1.47;SOR=0.481;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:180,0,127
chr1	62728784	rs2666472	A	G	8668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.99;SOR=1.583;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1987,186,0
chr1	62728838	rs2258470	T	C	16011.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=1.312;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,105:105:99:1|1:62728838_T_C:4498,319,0:62728838
chr1	62728861	rs2260581	T	C	17929.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.76;SOR=1.076;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,121:121:99:1|1:62728838_T_C:5243,376,0:62728838
chr1	62728918	rs2262110	G	A	16819.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.44;SOR=0.727;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,183:183:99:5336,548,0
chr1	62729015	rs2262106	G	A	11537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.884;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3609,336,0
chr1	62732170	rs1555833	A	T	77.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.23;SOR=2.303;VQSLOD=18.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	62733826	rs17123303	T	C	155.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.41;ReadPosRankSum=-1.570e-01;SOR=0.330;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:17:164,0,17
chr1	62733939	rs11207950	G	A	2880.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.68;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=-6.540e-01;SOR=0.679;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1730,141,0
chr1	62733957	.	AC	A	1218.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467e+00;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.04;ReadPosRankSum=0.022;SOR=0.784;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,38:64:99:1227,0,764
chr1	62734089	rs17123306	C	T	2349.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DB;DP=218;ExcessHet=3.0103;FS=1.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-1.150e+00;SOR=0.846;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,98:218:99:2358,0,2918
chr1	62737372	rs4609464	A	C	974.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.052e+00;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.47;ReadPosRankSum=-6.470e-01;SOR=1.445;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:700,60,0
chr1	62738555	rs59838506	T	C	61.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=20.42;SOR=1.179;VQSLOD=14.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:76,9,0
chr1	62738660	rs140001310	G	A	145.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.75;ReadPosRankSum=-3.660e-01;SOR=0.527;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:17:154,0,17
chr1	62738904	rs7516290	T	C	6711.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.27;DB;DP=94;ExcessHet=3.0103;FS=5.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=-1.494e+00;SOR=1.174;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3088,282,0
chr1	62738961	rs61623093	G	A	1760.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148e+00;DB;DP=100;ExcessHet=3.0103;FS=0.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=-6.680e-01;SOR=0.570;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,62:100:99:1769,0,1030
chr1	62739198	rs17855078	G	A	4963.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;DB;DP=183;ExcessHet=3.9794;FS=3.516;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.646;SOR=0.536;VQSLOD=6.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,98:183:99:2522,0,2229
chr1	62740065	rs12127930	A	G	6271.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.450e-01;DB;DP=164;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=0.490;SOR=0.725;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,164:164:99:4944,490,0
chr1	62740446	rs2666506	T	C	15583.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=0.728;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,127:127:99:1|1:62740446_T_C:5617,385,0:62740446
chr1	62740449	rs2666507	T	C	15465.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=0.808;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,123:123:99:1|1:62740446_T_C:5533,376,0:62740446
chr1	62740752	rs17123318	G	A	673.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=58;ExcessHet=3.0103;FS=2.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.360;SOR=1.158;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,26:58:99:682,0,745
chr1	62740930	rs2666508	A	G	315.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	62939634	rs1168007	C	T	3689.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=0.868;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1217,120,0
chr1	62941168	rs11330816	GA	G	143.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DB;DP=3;ExcessHet=1.5490;FS=2.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=-3.270e-01;SOR=0.223;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:84,9,0
chr1	62943264	rs1168008	C	T	6450.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=2.194;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1903,165,0
chr1	62945418	rs1183260	A	G	161.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.90;SOR=0.693;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:176,18,0
chr1	62953183	rs1168025	C	T	2613.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=2.012;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:642,60,0
chr1	62960250	rs1168041	T	C	941.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.70;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.97;ReadPosRankSum=0.892;SOR=0.416;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:392,27,0
chr1	62961928	rs1168038	T	C	1534.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=5.186;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:509,39,0
chr1	62970184	rs1168027	T	C	364.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=0.842;SOR=2.147;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:277,21,0
chr1	62973795	rs1184865	A	G	1427.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.408e+00;DB;DP=29;ExcessHet=1.5490;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-2.310e-01;SOR=0.403;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1030,87,0
chr1	62976472	rs1168043	T	G	2017.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=4.977;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:432,33,0
chr1	63001120	rs1168018	A	C	2331.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.91;DB;DP=38;ExcessHet=1.5490;FS=0.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-4.770e-01;SOR=0.889;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1353,114,0
chr1	63010871	rs12074528	T	C	76.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.37;SOR=2.303;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr1	63027411	rs5774610	AG	A	5736.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=1.781;VQSLOD=5.46;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:63027411_AG_A:1460,108,0:63027411
chr1	63052344	rs34963039	CTA	C	1035.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.00;SOR=0.619;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,12:23:99:470,0,427
chr1	63085483	rs34571440	T	TA	1182.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DB;DP=15;ExcessHet=3.0103;FS=7.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=1.47;SOR=0.089;VQSLOD=5.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,6:15:99:112,0,209
chr1	63113511	rs746735	C	A	2409.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.384e+00;DB;DP=48;ExcessHet=1.5490;FS=0.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=1.72;SOR=0.569;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1511,144,0
chr1	63113689	rs1168088	T	C	1423.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.39;SOR=1.547;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:457,36,0
chr1	63113719	rs1168089	T	C	893.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.328e+00;DB;DP=19;ExcessHet=1.5490;FS=1.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.92;ReadPosRankSum=0.502;SOR=1.545;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:679,57,0
chr1	63306960	rs12743698	C	T	218	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.328;SOR=1.609;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	63307303	rs3737892	A	G	388.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.080e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=-9.360e-01;SOR=0.693;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:177,15,0
chr1	63788951	rs2274187	C	A	1267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655e+00;DB;DP=78;ExcessHet=3.0103;FS=0.863;MQ=60.00;MQRankSum=0.00;QD=16.25;ReadPosRankSum=-1.160e-01;SOR=0.856;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,44:78:99:1276,0,948
chr1	63836513	rs34542411	C	G	845.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.92;SOR=3.258;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:862,66,0
chr1	63871758	rs2273122	T	C	138.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=3.258;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:155,12,0
chr1	63872032	rs35383149	T	C	709.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.19;SOR=0.725;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,29:64:99:718,0,808
chr1	63872600	rs12755065	T	C	1237.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=3.675;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1254,102,0
chr1	63872871	rs6588028	A	G	4628.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e-01;DB;DP=69;ExcessHet=3.9794;FS=4.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=2.12;SOR=1.022;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2091,207,0
chr1	63881552	rs4630153	C	T	2799.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.540e-01;DB;DP=58;ExcessHet=3.9794;FS=7.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=2.07;SOR=0.338;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1729,173,0
chr1	63885222	rs4550089	T	G	230.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.70;SOR=3.912;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:247,18,0
chr1	63912546	rs12760364	G	T	1318.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.85;SOR=0.994;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1335,155,0
chr1	63988484	rs7413854	C	T	682.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=5.784;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr1	63991140	rs9436686	T	C	1926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=5.058;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:512,42,0
chr1	63991490	rs35446626	G	A	399.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=4.977;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:416,33,0
chr1	63997633	rs9804078	A	T	1563.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.49;SOR=0.981;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1580,159,0
chr1	63999826	rs6693255	C	T	1731.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=1.651;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1748,167,0
chr1	63999868	rs6657480	T	C	1379.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=2.147;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1396,129,0
chr1	63999891	rs6657559	T	C	1087.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=2.910;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1104,87,0
chr1	64015217	rs217485	G	A	3046.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=38;ExcessHet=3.9794;FS=5.316;MQ=59.81;MQRankSum=0.00;QD=21.76;ReadPosRankSum=1.61;SOR=0.334;VQSLOD=4.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1237,114,0
chr1	64017168	rs35517033	A	G	73.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.49;SOR=1.179;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
chr1	64017234	rs217484	G	C	388.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.000e-02;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=0.120;SOR=0.527;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	64021096	rs2273367	G	A	2671.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.42;SOR=0.976;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2688,282,0
chr1	64036838	rs4915903	G	A	1167.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.42;SOR=2.179;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1184,108,0
chr1	64038107	rs6588050	G	T	850.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.36;SOR=0.836;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:867,84,0
chr1	64097432	rs1126728	C	T	694.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=-7.520e-01;SOR=0.722;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,31:94:99:703,0,1439
chr1	64100478	rs6588052	A	T	3070.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=1.954;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1715,147,0
chr1	64100884	rs2301057	A	G	392.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.57;SOR=4.804;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	64102114	rs2269248	A	G	2044.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.64;SOR=3.258;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1153,102,0
chr1	64474804	rs285399	C	T	2854.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.85;POSITIVE_TRAIN_SITE;QD=33.58;SOR=2.503;VQSLOD=5.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:993,93,0
chr1	64515379	rs1772626	C	T	8662.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.97;SOR=1.581;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2708,239,0
chr1	64603231	rs3738151	G	A	1602.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770e+00;DB;DP=38;ExcessHet=3.9794;FS=5.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.00;SOR=0.282;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:568,0,654
chr1	64607834	rs10489901	G	A	103.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=1.15;SOR=0.446;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:112,0,30
chr1	64608329	rs2762833	G	T	9721.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.08;ReadPosRankSum=-1.511e+00;SOR=0.346;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2439,210,0
chr1	64608423	rs11208364	G	A	1368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.712;SOR=0.665;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:591,0,673
chr1	64608563	rs11587715	A	G	130.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=1.72;SOR=0.941;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:139,0,99
chr1	64624612	rs4362024	G	A	3933.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.87;SOR=4.784;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1009,78,0
chr1	64624842	rs6668545	A	G	6605.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=129;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=1.07;SOR=0.666;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4161,387,0
chr1	64643277	rs7527017	C	T	2783.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=1.038;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2800,275,0
chr1	64669567	rs2806529	A	T	2456.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=34;ExcessHet=3.9794;FS=4.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=-3.840e-01;SOR=0.402;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1089,101,0
chr1	65016349	rs2164571	A	T	12676.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.93;SOR=1.089;VQSLOD=5.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4272,420,0
chr1	65016681	rs12408795	G	A	208.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=0.328;SOR=0.446;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	65045602	rs5774708	TA	T	4056.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.04;SOR=0.927;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1748,189,0
chr1	65068638	rs6665437	T	C	6455.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=2.040;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1957,198,0
chr1	65068782	.	CTTT	C	77.68	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=55.87;QD=25.89;SOR=2.833;VQSLOD=4.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr1	65094815	rs1436754	A	C	380.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.43;SOR=4.804;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr1	65098148	rs893080	T	C	806.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=0.549;SOR=2.066;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	65099701	rs5774715	G	GT	171.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.630e-01;DB;DP=26;ExcessHet=3.9794;FS=1.071;MQ=59.91;MQRankSum=0.00;QD=3.65;ReadPosRankSum=0.973;SOR=0.473;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,4:26:23:23,0,425
chr1	65099978	rs2118102	G	A	3609.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=2.137;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:931,86,0
chr1	65100053	.	TTATG	T	280.47	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=36.77;SOR=0.283;VQSLOD=2.85;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr1	65107372	rs6664905	C	T	2143.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.981;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:601,60,0
chr1	65107850	rs893074	T	C	1954.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=1.981;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:389,33,0
chr1	65113351	rs7534210	T	C	2361.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=4.514;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:561,45,0
chr1	65113568	rs6588100	T	C	11434.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=0.825;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3711,378,0
chr1	65129233	rs11289872	GA	G	93.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=24;ExcessHet=3.9794;FS=2.491;MQ=60.00;MQRankSum=0.00;QD=1.86;ReadPosRankSum=-3.160e-01;SOR=1.329;VQSLOD=4.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,6:24:52:52,0,375
chr1	65247394	rs2478151	T	C	521.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=0.230;SOR=1.051;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:49:357,0,49
chr1	65255018	rs2500232	G	A	2002.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.360e-01;DB;DP=46;ExcessHet=3.9794;FS=0.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=1.46;SOR=0.880;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,29:46:99:828,0,440
chr1	65684425	rs11208611	C	T	410.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602e+00;DB;DP=11;ExcessHet=6.9897;FS=1.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-2.300e-01;SOR=0.234;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:16:16,0,306
chr1	65730851	rs1749970	C	T	356.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.319;SOR=0.914;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:180,0,188
chr1	65730862	rs1749971	A	G	306.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.58;ReadPosRankSum=0.319;SOR=1.112;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:98:175,0,98
chr1	65830297	rs58549467	G	T	2245.36	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=23;ExcessHet=3.0103;FS=2.161;MQ=60.00;MQRankSum=0.00;QD=29.16;ReadPosRankSum=2.55;SOR=1.729;VQSLOD=4.89;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,11:23:99:385,0,394
chr1	65830299	rs2296479	T	G	1456.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=25;ExcessHet=3.0103;FS=3.129;MQ=60.00;MQRankSum=0.00;QD=30.99;ReadPosRankSum=2.74;SOR=1.382;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:385,0,530
chr1	65844963	rs3818449	A	G	4948.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=88;ExcessHet=3.9794;FS=5.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=-3.610e-01;SOR=1.041;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,37:88:99:1112,0,1270
chr1	65849887	rs61753391	G	A	840.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.550e-01;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=1.38;SOR=0.586;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,32:56:99:849,0,643
chr1	65852310	rs11208643	A	G	305.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=1.32;SOR=1.061;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:104,0,100
chr1	65852870	rs9436725	A	G	1251.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=18;ExcessHet=3.9794;FS=4.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=-8.490e-01;SOR=1.714;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:375,0,204
chr1	65858088	rs6588144	T	C	1905.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=54;ExcessHet=3.9794;FS=4.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.401;SOR=1.081;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,17:54:99:366,0,949
chr1	65858145	rs4325172	G	A	2813.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=68;ExcessHet=3.9794;FS=12.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=1.05;SOR=1.032;VQSLOD=16.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,24:68:99:527,0,1085
chr1	65860687	rs4582839	A	C	5287.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=101;ExcessHet=3.9794;FS=3.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=0.714;SOR=0.786;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,49:101:99:1182,0,1096
chr1	65867391	rs4592284	C	G	3378.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=48;ExcessHet=3.9794;FS=9.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=0.126;SOR=0.250;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,30:48:99:806,0,457
chr1	65872019	rs35980819	A	G	108.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.04;ReadPosRankSum=1.96;SOR=0.693;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:65872019_A_G:117,0,230:65872019
chr1	65872021	rs35006501	CTT	C	108.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=1.96;SOR=0.693;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:65872019_A_G:117,0,230:65872019
chr1	65874626	rs66951816	A	AT	113.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=0.815;SOR=1.085;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:122,0,230
chr1	65886398	rs3790435	T	C	3038.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.20;DB;DP=166;ExcessHet=3.9794;FS=0.453;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-1.089e+00;SOR=0.732;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,68:166:99:1616,0,2453
chr1	65886448	rs3790434	T	C	3776.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=242;ExcessHet=3.9794;FS=1.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=1.16;SOR=0.773;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:151,91:242:99:2148,0,3601
chr1	65887013	rs12145690	A	C	2819.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=106;ExcessHet=3.9794;FS=6.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-8.000e-02;SOR=0.410;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,63:106:99:1745,0,985
chr1	65895927	rs9436301	T	C	1150.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=0.408;SOR=1.036;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:506,0,194
chr1	66031063	rs6673324	G	A	208.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-3.280e-01;SOR=0.368;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:133,0,112
chr1	66031526	.	T	TCA	118.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=1.47;SOR=1.179;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:87:127,0,87
chr1	66031528	rs10157915	T	A	613	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.26;ReadPosRankSum=1.53;SOR=2.200;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:10:272,0,10
chr1	66036028	rs3790431	A	G	314.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=1.06;SOR=0.368;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:210,0,401
chr1	66036501	rs2186248	G	T	3936.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=3.675;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:998,78,0
chr1	66037973	rs370258396	GT	G	272.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=59.59;MQRankSum=-4.500e-02;QD=3.33;ReadPosRankSum=-7.600e-02;SOR=0.706;VQSLOD=0.365;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:60:60,0,115
chr1	66058204	rs201574077	G	GT	510.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.18;ReadPosRankSum=-1.111e+00;SOR=4.003;VQSLOD=2.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:26:167,0,26
chr1	66058513	rs1137101	A	G	4636.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.077;DB;DP=115;ExcessHet=1.5490;FS=3.756;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=0.629;SOR=1.008;VQSLOD=7.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3388,344,0
chr1	66064293	rs3762273	A	C	1145.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.320e-01;DB;DP=25;ExcessHet=1.5490;FS=5.329;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=2.00;SOR=1.699;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:846,75,0
chr1	66064710	rs3828033	C	T	264.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-4.310e-01;SOR=1.270;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:213,15,0
chr1	66067109	rs1805134	T	C	2196.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.75;DB;DP=57;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.75;ReadPosRankSum=-1.424e+00;SOR=0.715;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1802,171,0
chr1	66731886	rs6588193	G	C	799.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=14;ExcessHet=1.5490;FS=4.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.22;ReadPosRankSum=0.819;SOR=1.863;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:565,42,0
chr1	66732386	rs6588194	G	A	5262.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.737e+00;DB;DP=117;ExcessHet=1.5490;FS=2.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=-1.245e+00;SOR=0.558;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3324,347,0
chr1	66732529	rs6701329	A	T	3546.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.54;SOR=3.564;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1357,108,0
chr1	66829262	rs783039	A	G	3864.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.330e-01;DB;DP=61;ExcessHet=3.9794;FS=1.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=1.26;SOR=0.589;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,33:61:99:880,0,767
chr1	66831256	rs144339850	C	CA	1125.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;DB;DP=33;ExcessHet=3.9794;FS=9.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-7.140e-01;SOR=1.773;VQSLOD=4.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,21:33:99:647,0,329
chr1	66831370	rs783036	G	A	3956.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=74;ExcessHet=6.9897;FS=2.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-4.840e-01;SOR=0.866;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,43:74:99:1202,0,818
chr1	66837859	rs783068	G	A	173.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:112,0,71
chr1	67094288	rs72669450	A	G	362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=2.12;SOR=1.445;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,156
chr1	67099488	rs11420348	G	GA	350.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-4.840e-01;SOR=0.425;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:65:65,0,94
chr1	67101802	rs7546825	A	G	386.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.20;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.120;SOR=0.420;VQSLOD=1.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:238,0,129
chr1	67101844	rs7524680	G	A	129.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=-1.800e-01;SOR=0.941;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:83:138,0,83
chr1	67105207	rs7548488	T	A	71.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=2.303;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	67125911	.	A	AGAGGGAGG	144.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.080e-01;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.03;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,442
chr1	67126114	rs12094526	A	G	3855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DB;DP=105;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-6.010e-01;SOR=0.671;VQSLOD=6.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,46:105:99:1071,0,1438
chr1	67136560	rs45467391	G	T	328.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217e+00;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=0.801;SOR=0.650;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,15:48:99:337,0,970
chr1	67142675	rs11208943	T	C	442.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-02;DB;DP=34;ExcessHet=3.0103;FS=1.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-5.900e-01;SOR=0.425;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:451,0,335
chr1	67145322	rs10889644	C	A	1843.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.250e-01;DB;DP=51;ExcessHet=6.9897;FS=0.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.460;SOR=0.781;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,17:51:99:438,0,995
chr1	67147691	rs17129329	A	G	1035.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.028e+00;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.889;SOR=0.773;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,40:101:99:1044,0,1817
chr1	67149706	rs10749764	G	C	749.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-6.240e-01;SOR=0.434;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:54:54,0,243
chr1	67154730	rs139348429	CA	C	1443.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=1.28;SOR=0.646;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:124,0,182
chr1	67195184	rs1032635	C	G	5597.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.230;DB;DP=73;ExcessHet=3.9794;FS=2.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=1.96;SOR=0.496;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,73:73:99:1|1:67195184_C_G:3234,220,0:67195184
chr1	67195192	rs1032634	C	G	5398.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.333e+00;DB;DP=67;ExcessHet=3.9794;FS=8.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=2.08;SOR=0.295;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,67:67:99:1|1:67195184_C_G:3057,205,0:67195184
chr1	67195353	rs2483704	G	A	456.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.15;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=0.700;SOR=1.292;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr1	67205327	rs473470	C	T	225.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.11;SOR=2.303;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr1	67220642	rs488584	A	T	552.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.53;SOR=4.174;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr1	67266756	rs549148	T	A	3890.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.270e-01;DB;DP=44;ExcessHet=3.0103;FS=5.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=-1.051e+00;SOR=0.651;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1316,132,0
chr1	67279881	rs74609208	C	A	500.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653e+00;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.95;ReadPosRankSum=-2.910e-01;SOR=0.605;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,27:72:99:509,0,1182
chr1	67280110	rs533430	G	T	236.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.22;SOR=2.303;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	67287866	rs34707377	GA	G	123.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.094e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.30;ReadPosRankSum=-4.800e-01;SOR=0.693;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:83,9,0
chr1	67288045	rs482082	C	T	1986.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DB;DP=64;ExcessHet=6.9897;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-8.870e-01;SOR=0.760;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,17:64:99:248,0,1200
chr1	67288229	rs41300323	C	A	197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180e-01;DB;DP=13;ExcessHet=3.0103;FS=7.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-1.120e+00;SOR=3.477;VQSLOD=13.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:206,0,211
chr1	67292473	rs34718535	A	AT	2709.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030e-01;DB;DP=44;ExcessHet=6.9897;FS=0.656;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=-4.340e-01;SOR=0.776;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,27:44:99:0|1:67292473_A_AT:1117,0,1052:67292473
chr1	67292478	rs36067642	T	A	2720.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.400e-01;DB;DP=47;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.03;ReadPosRankSum=-1.080e-01;SOR=0.733;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,28:47:99:0|1:67292473_A_AT:1111,0,1095:67292473
chr1	67303303	rs6698076	A	G	464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;DB;DP=13;ExcessHet=3.9794;FS=3.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.416;SOR=0.223;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:144,0,175
chr1	67327894	rs34182923	A	G	1205.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.770e-01;DB;DP=73;ExcessHet=3.0103;FS=8.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=1.25;SOR=0.184;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,46:73:99:1214,0,698
chr1	67358740	rs7513846	G	A	104.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.87;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:73:0|1:67358740_G_A:113,0,73:67358740
chr1	67358746	.	GAGAA	G	254.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.72;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=0.524;SOR=0.859;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:73:1|0:67358740_G_A:73,0,114:67358740
chr1	67359195	rs3008881	T	A	311.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-3.660e-01;SOR=0.223;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:70:70,0,108
chr1	67384639	rs6657065	T	G	1325.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.86;SOR=5.486;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:444,33,0
chr1	67390416	rs3008858	G	C	27049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=291;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.59;SOR=0.711;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,291:291:99:8402,872,0
chr1	67390468	rs1886686	C	G	22065.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=1.521;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,211:211:99:6660,633,0
chr1	67390999	rs3008859	G	C	1973.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.42;SOR=5.330;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:36:1|1:67390999_G_C:511,36,0:67390999
chr1	67391003	rs3008860	G	C	1827.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=4.565;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:67390999_G_C:401,27,0:67390999
chr1	67396222	rs3008861	T	G	2990.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.48;SOR=6.273;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:639,45,0
chr1	67423997	rs146392518	T	TTTCTC	1108.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=6.439;VQSLOD=7.42;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	67425311	rs2985794	T	G	3394.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=1.755;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:834,78,0
chr1	67425494	rs35465377	A	AT	894.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=7;ExcessHet=3.0103;FS=3.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=0.226;SOR=2.274;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:188,21,0
chr1	67473977	rs2755266	A	G	680.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=5.892;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:269,21,0
chr1	67487119	rs2065002	C	A	4648.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=0.953;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1384,119,0
chr1	67487374	rs66809311	TCCAACA	T	1829.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=1.981;VQSLOD=5.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:51:761,51,0
chr1	67487393	rs72331230	CAG	C	132.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=8;ExcessHet=6.9897;FS=2.539;MQ=60.00;MQRankSum=0.00;QD=7.00;ReadPosRankSum=0.00;SOR=0.160;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,2:8:29:29,0,134
chr1	67487395	rs11576752	G	*,C	413.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=22.96;SOR=2.303;VQSLOD=18.17;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,2,5:7:32:739,160,132,83,0,32
chr1	67487401	rs11576753	G	C	690.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.21;SOR=1.981;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:19:311,19,0
chr1	67487407	rs11208992	G	C	946.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.55;SOR=1.981;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:22:356,22,0
chr1	67507734	rs2815375	T	A	1066.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=6.666;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:275,21,0
chr1	67512695	rs1024228	A	G	153.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=-3.850e-01;SOR=1.179;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr1	67512903	rs1024229	G	T	2620.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760e+00;DB;DP=58;ExcessHet=1.5490;FS=0.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=0.348;SOR=0.593;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1759,174,0
chr1	67512920	rs1024230	A	C	2780.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.360e-01;DB;DP=65;ExcessHet=1.5490;FS=3.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=-7.600e-02;SOR=0.448;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1912,194,0
chr1	67515309	rs2755257	C	T	519.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.200e-02;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.84;ReadPosRankSum=-4.110e-01;SOR=2.303;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:321,24,0
chr1	67516316	rs2815383	T	A	212.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=-1.150e+00;SOR=2.584;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	67519333	rs2251004	C	G	557.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=-7.780e-01;SOR=2.712;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:258,18,0
chr1	67558739	rs6588237	C	T	4200.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=1.701;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1318,138,0
chr1	67560897	rs10889653	A	G	8488.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=1.635;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2517,252,0
chr1	67560956	rs11208997	C	T	12032.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.79;SOR=0.712;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3184,326,0
chr1	67562106	rs6670381	G	T	3285.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=23;ExcessHet=3.0103;FS=1.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.15;ReadPosRankSum=-2.890e-01;SOR=0.418;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:825,69,0
chr1	67568824	rs1885276	G	T	1568.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=7.276;VQSLOD=24.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:383,27,0
chr1	67577367	rs6588240	A	T	6669.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.270e-01;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=0.225;SOR=0.668;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2368,239,0
chr1	67579245	rs2144655	G	A	1035.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e-01;DB;DP=12;ExcessHet=3.0103;FS=3.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.37;ReadPosRankSum=-7.120e-01;SOR=2.448;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:478,36,0
chr1	67579386	rs2144656	A	G	4307.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.98;SOR=0.945;VQSLOD=16.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1363,129,0
chr1	67591347	rs6691094	A	G	1606.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.915e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=1.67;SOR=1.329;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:671,54,0
chr1	67591611	.	GAA	G,GA	1460.67	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.176;DP=28;ExcessHet=3.0103;FS=1.592;MQ=59.87;MQRankSum=-3.060e-01;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=-1.380e-01;SOR=1.362;VQSLOD=1.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,17,7:28:47:501,47,128,267,0,286
chr1	67591660	rs4655520	G	A	1448.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.400e-02;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=0.218;SOR=0.892;VQSLOD=5.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:523,39,0
chr1	67635475	rs10889664	C	T	404.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.169e+00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=-5.450e-01;SOR=0.874;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr1	67648460	rs6687620	T	C	2144.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=2.267;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:757,66,0
chr1	67666235	rs11209017	A	T	386.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.314;DB;DP=4;ExcessHet=3.9794;FS=6.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-2.630e-01;SOR=2.636;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	67672567	rs5774857	C	CT	229.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=20;ExcessHet=3.9794;FS=1.028;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.99;ReadPosRankSum=-2.660e-01;SOR=0.965;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:150,0,110
chr1	67685116	rs2863212	C	T	602.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.64;SOR=5.670;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	67685387	rs7530511	T	C	4395.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=0.919;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1351,135,0
chr1	67685443	rs7518660	G	A	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-1.333e+00;SOR=0.495;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:286,0,435
chr1	67685598	rs11465802	A	C	458.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=8.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=0.842;SOR=3.590;VQSLOD=14.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:153,0,25
chr1	67705574	rs10789229	C	T	1295.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=-1.920e-01;SOR=0.900;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:132,0,272
chr1	67705726	rs10889671	A	G	5431.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.32;SOR=1.179;VQSLOD=17.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1584,144,0
chr1	67706101	.	T	C	46.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.61;ReadPosRankSum=-1.981e+00;SOR=0.223;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:55:55,0,190
chr1	67795319	rs1495963	T	C	7585.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.008e+00;DB;DP=103;ExcessHet=3.0103;FS=4.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=-1.275e+00;SOR=0.591;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2980,308,0
chr1	67846112	rs881086	A	T	132.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,68
chr1	67852141	rs12138812	A	G	2108.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=42;ExcessHet=6.9897;FS=2.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=-1.010e-01;SOR=0.982;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:733,0,581
chr1	67852335	rs2228420	G	A	2647.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=129;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-9.250e-01;SOR=0.670;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,51:129:99:1214,0,1929
chr1	67852553	rs145202966	TTTTATATATATATATATATATATATATATATATA	T	404.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DB;DP=13;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.49;ReadPosRankSum=2.00;SOR=1.179;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,8:13:99:0|1:67852553_TTTTATATATATATATATATATATATATATATATA_T:302,0,150:67852553
chr1	67852610	rs12724290	C	T	166.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.36;SOR=3.258;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:67852553_TTTTATATATATATATATATATATATATATATATA_T:90,6,0:67852553
chr1	67856021	rs2270614	A	G	221.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=1.04;SOR=0.495;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,101
chr1	67861520	rs2229546	C	A	5464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DB;DP=185;ExcessHet=3.9794;FS=0.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-5.800e-02;SOR=0.635;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,96:185:99:2361,0,2206
chr1	67892211	rs10889686	A	G	907.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.61;SOR=6.439;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:202,18,0
chr1	68513208	rs116015410	C	T	171.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.345;SOR=0.892;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:180,0,141
chr1	68593131	rs4655776	C	G	50.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=1.07;SOR=0.223;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,189
chr1	68609967	rs7529360	C	T	177.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.60;ReadPosRankSum=-9.670e-01;SOR=2.303;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:72,0,31
chr1	68613933	rs2303949	C	T	526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030e-01;DB;DP=38;ExcessHet=3.0103;FS=1.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-1.380e+00;SOR=1.051;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:535,0,487
chr1	68614013	rs2566789	A	G	2776.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.39;ReadPosRankSum=0.691;SOR=0.709;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:418,0,240
chr1	68620998	rs2820488	C	G	87.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-7.030e-01;SOR=0.368;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:96:96,0,193
chr1	68652084	rs2772297	T	C	835.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.050e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.95;ReadPosRankSum=1.19;SOR=2.753;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr1	68660205	rs1036066	A	C	303.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=2.35;SOR=0.818;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:164,0,26
chr1	68698131	rs11540823	C	T	244.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=-1.830e-01;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:82:253,0,82
chr1	68904418	rs3118421	A	G	352.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=4.804;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:184,15,0
chr1	68905358	rs1925955	G	C	3264.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=33;ExcessHet=3.9794;FS=5.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.478;SOR=0.300;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,22:33:99:645,0,248
chr1	68943436	rs1924542	G	A	1798.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.288e+00;DB;DP=24;ExcessHet=1.5490;FS=5.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=0.154;SOR=0.184;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:75:1|1:68943436_G_A:1107,75,0:68943436
chr1	68943442	rs3790476	A	G	1776.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.910e-01;DB;DP=25;ExcessHet=1.5490;FS=7.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=0.954;SOR=0.161;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:68943436_G_A:1094,75,0:68943436
chr1	68943665	rs12119046	T	G	1742.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=-1.858e+00;SOR=0.674;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,35:35:99:1|1:68943664_A_G:1120,104,0:68943664
chr1	68947318	rs3833522	C	CA	2513.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=34;ExcessHet=3.0103;FS=2.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=0.061;SOR=0.902;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1083,102,0
chr1	68952564	rs55915411	AAC	A	790.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.24;ReadPosRankSum=1.50;SOR=0.843;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:151,18,0
chr1	68954945	rs6669928	C	T	683.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.116e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=-1.630e-01;SOR=2.737;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:422,30,0
chr1	68960476	rs4926345	T	G	572.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.260e-01;DB;DP=10;ExcessHet=1.5490;FS=2.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=-1.658e+00;SOR=0.160;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:319,30,0
chr1	70034370	rs11280966	C	CCAGCCGCGTG	21195.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=1.565;VQSLOD=5.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,157:157:99:6881,472,0
chr1	70304758	rs12735430	A	G	6011.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.06;SOR=0.936;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2682,265,0
chr1	70385131	.	C	T	1143.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977e+00;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.85;ReadPosRankSum=0.813;SOR=0.657;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,44:89:99:1152,0,1425
chr1	70397087	rs7530457	T	C	9296.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=1.101;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4170,405,0
chr1	70502413	rs59671095	AT	A	63.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:31:72,0,31
chr1	70611347	rs595662	A	G	675.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=-5.450e-01;SOR=2.833;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:186,15,0
chr1	70614105	rs140082221	AAAAAC	A	886.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=1.37;SOR=0.399;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,23:38:99:895,0,906
chr1	70614427	rs476591	T	C	239.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-1.133e+00;SOR=1.136;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:248,0,381
chr1	70618409	rs666163	C	T	86.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.414;SOR=0.368;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:95:95,0,198
chr1	70654981	.	GAA	G,GA	975.27	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.350e-01;DP=34;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;QD=9.29;ReadPosRankSum=0.654;SOR=0.716;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:7,10,13:34:99:425,123,272,125,0,143
chr1	70687887	rs2297484	T	G	103.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.66;SOR=2.833;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr1	70710573	rs2034756	G	T	485.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DB;DP=36;ExcessHet=3.0103;FS=1.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.624e+00;SOR=1.085;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:494,0,350
chr1	70715884	rs10489928	C	T	218.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=-6.480e-01;SOR=0.569;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:87:227,0,87
chr1	70831841	rs7539544	C	T	485.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DB;DP=40;ExcessHet=3.0103;FS=1.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.352;SOR=0.976;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:494,0,552
chr1	70883840	rs1145920	A	G	940.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.36;ReadPosRankSum=-1.383e+00;SOR=2.621;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:25:186,0,25
chr1	70897909	.	A	C	505.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.31;ReadPosRankSum=2.38;SOR=0.627;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:514,0,497
chr1	70904523	rs112004441	T	TTGTG	3714.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;DB;DP=40;ExcessHet=3.0103;FS=21.527;MQ=59.99;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=-3.290e-01;SOR=3.080;VQSLOD=0.289;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,11:40:99:384,0,1005
chr1	70904800	rs1021737	G	T	2169.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=83;ExcessHet=3.9794;FS=1.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.738;SOR=0.844;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1109,0,1081
chr1	71331498	rs1409986	A	G	7509.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=1.107;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2385,233,0
chr1	71419499	rs571705	C	T	2714.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.223e+00;DB;DP=29;ExcessHet=3.0103;FS=1.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=-1.727e+00;SOR=0.518;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1149,87,0
chr1	71440217	rs2072947	C	T	207.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-3.190e-01;SOR=1.402;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:105,0,31
chr1	71512065	rs114052363	A	G	96.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-3.280e-01;SOR=0.495;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:105,0,141
chr1	71533560	.	AT	A	168.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030e-01;DP=9;ExcessHet=6.9897;FS=3.174;MQ=60.00;MQRankSum=0.00;QD=6.23;ReadPosRankSum=-5.890e-01;SOR=1.845;VQSLOD=4.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:66:81,0,66
chr1	72058367	rs1334004	C	T	1889.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=2.917;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:811,69,0
chr1	72058405	rs1334005	T	C	3299.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.37;SOR=1.585;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1309,114,0
chr1	72058552	rs1413368	G	A	8898.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=0.794;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3128,305,0
chr1	72058775	rs1413369	G	A	1464.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=7.223;VQSLOD=23.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:336,27,0
chr1	72242039	rs6424448	G	A	1793.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=7.614;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:491,36,0
chr1	72401185	rs2256783	T	C	157.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=1.04;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:66,0,32
chr1	72747803	rs149407654	G	C	322.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=1.52;SOR=1.112;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:331,0,177
chr1	74492769	rs1384884	G	T	802.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.91;ReadPosRankSum=1.04;SOR=4.003;VQSLOD=15.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:105,0,65
chr1	74507711	rs7538410	T	G	2134.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063e+00;DB;DP=13;ExcessHet=3.0103;FS=6.748;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.89;ReadPosRankSum=-1.265e+00;SOR=4.174;VQSLOD=13.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:163,0,213
chr1	74575182	rs1340472	C	T	4257.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=60;ExcessHet=3.0103;FS=3.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=-3.720e-01;SOR=0.686;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,33:60:99:784,0,547
chr1	74610233	rs5775226	T	TA	259.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DB;DP=16;ExcessHet=6.9897;FS=2.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.90;ReadPosRankSum=-4.610e-01;SOR=0.736;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:16:37:37,0,150
chr1	74646514	rs6701961	C	T	5986.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=3.064;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1327,114,0
chr1	74664149	rs4422957	T	C	1828.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=118;ExcessHet=3.0103;FS=0.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.559;SOR=0.783;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,64:118:99:1837,0,1296
chr1	74665493	rs792310	G	A	1484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-02;DB;DP=92;ExcessHet=3.0103;FS=2.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-2.370e-01;SOR=0.448;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,57:92:99:1493,0,816
chr1	74666729	rs12753370	C	T	60.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:69,0,34
chr1	74669911	rs9425023	T	C	91.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:100,0,29
chr1	74669973	rs9425024	T	G	2144.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.03;ReadPosRankSum=-6.230e-01;SOR=3.500;VQSLOD=17.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:52:310,0,52
chr1	74671519	rs571848	A	G	226.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-7.100e-02;SOR=0.919;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:235,0,331
chr1	74701295	rs505508	T	A	1351.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=7.054;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr1	74701651	rs500203	A	T	192.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.74;SOR=3.611;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr1	74701950	rs532221	T	A	418.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-1.013e+00;SOR=0.818;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,15:21:99:427,0,119
chr1	74716515	rs67159904	CT	C	1026.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=62;ExcessHet=6.9897;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=-1.880e-01;SOR=0.680;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,16:62:99:218,0,777
chr1	74819077	rs6424586	T	G	6542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=0.873;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1703,156,0
chr1	74835788	rs12034234	T	C	262.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.86;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:71,0,32
chr1	74841173	rs2880795	A	C	2305.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=2.985;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:494,39,0
chr1	74901739	.	CTT	C,CT	2049.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.280e-01;DP=36;ExcessHet=3.0103;FS=0.000;MQ=59.66;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=0.989;SOR=0.992;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,11,14:36:99:609,196,207,265,0,226
chr1	74936374	rs596204	A	G	5989.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DB;DP=140;ExcessHet=6.9897;FS=4.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.213;SOR=0.742;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,69:140:99:1813,0,1852
chr1	74936454	rs491922	G	C	5193.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=148;ExcessHet=6.9897;FS=2.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=0.080;SOR=0.892;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,60:148:99:1745,0,2228
chr1	74937749	rs3765674	A	G	6227.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=133;ExcessHet=6.9897;FS=5.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-9.900e-02;SOR=0.646;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,63:133:99:1785,0,1632
chr1	74940800	rs58420581	C	CCACA	113.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.98;ReadPosRankSum=-1.383e+00;SOR=1.329;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr1	74941210	rs648614	C	T	7024.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=180;ExcessHet=6.9897;FS=1.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.800;SOR=0.805;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,84:180:99:2142,0,2311
chr1	74941293	rs649058	G	A	8194.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.720e-01;DB;DP=210;ExcessHet=6.9897;FS=1.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-5.990e-01;SOR=0.751;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,111:210:99:2615,0,2437
chr1	74954752	.	A	G	147.02	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=26.67;SOR=3.258;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr1	75006027	rs3895907	A	G	1506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=35;ExcessHet=3.9794;FS=0.800;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=2.06;SOR=0.841;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:515,0,405
chr1	75006076	rs3845348	G	A	2123.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.130e+00;DB;DP=24;ExcessHet=3.9794;FS=3.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=1.10;SOR=0.327;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:789,71,0
chr1	75036783	rs9326115	T	C	10348.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.803e+00;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.38;ReadPosRankSum=-1.693e+00;SOR=0.780;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3507,309,0
chr1	75036812	rs9326116	C	T	12748.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=1.609;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:137:99:4456,404,0
chr1	75042929	rs142907816	G	GA	44.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=22.12;SOR=2.303;VQSLOD=2.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr1	75072264	rs41289216	G	T	1708.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.646e+00;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.88;ReadPosRankSum=0.267;SOR=2.670;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:835,69,0
chr1	75086665	rs10493546	T	C	505.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=-2.310e-01;SOR=2.093;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:398,33,0
chr1	75097426	rs11210490	G	C	5438.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.873;DB;DP=87;ExcessHet=3.9794;FS=0.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.22;ReadPosRankSum=0.443;SOR=0.790;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2817,260,0
chr1	75100640	rs12127070	A	G	295.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=-1.383e+00;SOR=0.941;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr1	75108863	rs623171	A	C	4623.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=2.183;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1358,117,0
chr1	75112573	rs151179245	G	GACACAC	252.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=35.86;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=5.48;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	75132462	rs5775255	T	TA	3173.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DB;DP=59;ExcessHet=3.9794;FS=1.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=0.082;SOR=0.608;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,31:59:99:708,0,625
chr1	75172756	rs71695861	TAA	T	2901.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=55;ExcessHet=6.9897;FS=4.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.408;SOR=1.085;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,33:55:99:1037,0,615
chr1	75176051	rs61790696	G	A	457.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DB;DP=14;ExcessHet=3.9794;FS=7.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-8.730e-01;SOR=0.042;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:209,0,238
chr1	75190452	rs1051122	C	T	6066.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DB;DP=101;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=-4.070e-01;SOR=0.692;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,46:101:99:1206,0,1404
chr1	75198763	rs277372	A	C	1151.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.40;POSITIVE_TRAIN_SITE;QD=33.23;SOR=5.283;VQSLOD=5.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr1	75199152	rs277373	C	T	13214.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=1.287;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4039,378,0
chr1	75199299	rs28568334	C	G	2823.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539e+00;DB;DP=46;ExcessHet=3.9794;FS=1.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-4.540e-01;SOR=0.519;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:511,0,872
chr1	75204143	rs277375	G	A	136.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.380e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.700;SOR=0.527;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:145,0,191
chr1	75214390	rs749690	G	C	2069.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244e+00;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=-1.147e+00;SOR=0.592;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:490,0,605
chr1	75217752	rs11485298	C	T	401.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.48;ReadPosRankSum=1.98;SOR=1.371;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:57:184,0,57
chr1	75602214	rs140903812	C	T	5723.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-01;DB;DP=233;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=1.05;QD=11.92;ReadPosRankSum=0.662;SOR=0.715;VQSLOD=0.709;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:124,109:233:99:2526,0,3117
chr1	75602384	rs71500673	G	T	1948.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.067e+00;DB;DP=69;ExcessHet=3.9794;FS=6.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.918;SOR=0.336;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,31:69:99:756,0,1216
chr1	75603055	rs1526503	A	G	9287.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=1.609;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2856,249,0
chr1	75603101	rs6695423	A	G	2336.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=65;ExcessHet=3.9794;FS=0.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=0.794;SOR=0.609;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,43:65:99:1246,0,431
chr1	75603207	rs6681258	G	T	872.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.570e-01;DB;DP=21;ExcessHet=3.9794;FS=6.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-9.060e-01;SOR=0.115;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:415,0,237
chr1	75614380	rs35220110	CT	C	1676.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.560e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=1.63;SOR=0.751;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:27:80:669,80,0
chr1	75626420	rs2462955	A	T	5037.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=3.136;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1372,119,0
chr1	75669619	rs149321205	T	TTTG	1029.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.14;SOR=6.439;VQSLOD=6.03;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:252,18,0
chr1	75672376	rs1948874	A	G	10586.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=0.996;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3133,299,0
chr1	75679176	rs10530971	ATC	A	293.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=4.407;VQSLOD=6.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	75680545	rs688513	T	G	2487.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.08;ReadPosRankSum=1.48;SOR=0.802;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:644,60,0
chr1	75680565	rs688539	G	A	2308.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.46;SOR=2.406;VQSLOD=18.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:503,45,0
chr1	75681351	rs594470	A	T	2008.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=5.630;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:321,24,0
chr1	75681511	rs595009	T	C	10125.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.35;SOR=0.759;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3095,337,0
chr1	75683291	rs11162810	T	C	631.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=5.670;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:250,18,0
chr1	75684529	rs610159	A	G	2420.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=6.027;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:331,27,0
chr1	75685643	rs12042874	T	C	2751.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=3.489;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:932,75,0
chr1	75716925	rs588098	C	T	6775.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.85;SOR=1.095;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2287,234,0
chr1	75740845	rs1144298	A	G	3255.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=2.278;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:759,69,0
chr1	75766186	rs623850	G	A	1789.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.98;SOR=3.611;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:378,30,0
chr1	75823084	rs1249833	C	T	2291.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=5.211;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:681,48,0
chr1	75862560	rs76949596	G	C	72.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.49;SOR=2.303;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	76007232	rs211744	C	T	576.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=1.402;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:593,60,0
chr1	76143443	rs7513363	A	G	546.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=58.99;MQRankSum=1.68;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=1.14;SOR=0.804;VQSLOD=0.527;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:144,0,211
chr1	76143458	rs7516122	T	C	615.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=58.64;MQRankSum=1.77;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-9.410e-01;SOR=0.712;VQSLOD=0.343;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:178,0,229
chr1	76143505	rs1746748	T	C	1570.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=54.75;QD=32.05;SOR=2.448;VQSLOD=2.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:332,30,0
chr1	76190216	rs17848068	G	A	293.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=-1.383e+00;SOR=4.407;VQSLOD=12.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:64,0,37
chr1	76190568	rs116034618	C	T	904.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;DB;DP=23;ExcessHet=1.5490;FS=3.318;MQ=60.00;MQRankSum=0.00;QD=21.55;ReadPosRankSum=2.80;SOR=0.317;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,13:23:99:0|1:76190568_C_T:336,0,340:76190568
chr1	76190569	rs1251075	C	G	555.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e-01;DB;DP=21;ExcessHet=3.9794;FS=4.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=1.31;SOR=1.503;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,8:21:99:1|0:76190568_C_T:222,0,522:76190568
chr1	76194054	rs7524467	C	G	1262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=59;ExcessHet=3.9794;FS=0.763;MQ=59.95;MQRankSum=0.984;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.975;SOR=0.809;VQSLOD=2.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,28:59:99:703,0,774
chr1	76194229	rs11316888	GT	G	8222.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=2.093;VQSLOD=4.94;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2135,187,0
chr1	76194306	rs1146572	A	G	2209.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.05;SOR=6.666;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:582,45,0
chr1	76198436	rs2275378	T	C	1522.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=69;ExcessHet=3.9794;FS=5.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=-1.090e+00;SOR=0.636;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,31:69:99:710,0,958
chr1	76198785	rs3818855	G	A	3983.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=153;ExcessHet=3.9794;FS=2.926;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.144;SOR=0.858;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,61:153:99:1442,0,2212
chr1	76199345	rs2153126	C	G	2108.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.450e-01;DB;DP=62;ExcessHet=3.9794;FS=1.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-3.860e-01;SOR=0.569;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,25:62:99:554,0,947
chr1	76205643	rs12127402	C	A	1703.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290e-01;DB;DP=66;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-7.500e-02;SOR=0.693;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,36:66:99:866,0,675
chr1	76216330	rs11161521	T	C	295.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=1.27;SOR=0.527;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:67:67,0,192
chr1	76227022	rs1061337	A	G	1766.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.330e-01;DB;DP=70;ExcessHet=3.9794;FS=0.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=1.42;SOR=0.619;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,27:70:99:656,0,1186
chr1	76234886	rs1146593	A	G	2786.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.78;SOR=0.815;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:742,63,0
chr1	76251746	rs1146632	T	C	788.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.15;SOR=6.091;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:230,18,0
chr1	76252011	rs1146634	G	A	10370.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.80;SOR=0.866;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3256,320,0
chr1	76252687	rs1146636	T	C	3940.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.840e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.03;ReadPosRankSum=-1.314e+00;SOR=1.068;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1384,137,0
chr1	76253045	rs3831900	T	TA	1209.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.240e-01;DB;DP=3;ExcessHet=3.0103;FS=13.106;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=-1.480e+00;SOR=1.797;VQSLOD=1.86;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr1	76254726	rs1498311	G	T	666.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=1.20;SOR=1.460;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:75:75,0,198
chr1	76255228	rs11161620	G	A	1192.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=32;ExcessHet=3.9794;FS=7.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.850;SOR=0.191;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:469,0,443
chr1	76255613	rs11588643	A	G	3402.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=35;ExcessHet=3.9794;FS=2.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.95;ReadPosRankSum=1.72;SOR=0.502;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:452,0,480
chr1	76257892	rs12703	A	T	7718.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=1.445;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2618,249,0
chr1	76259677	rs141490560	ACCTAAGAGTGAGACTTAACCCACTTTTAAATTGTTCT	A	185.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.41;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,4:13:99:141,0,2186
chr1	76260837	rs11161626	C	T	440.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=0.540;SOR=0.420;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:94:94,0,219
chr1	76260866	.	CTT	C	599.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DP=4;ExcessHet=3.0103;FS=2.634;MQ=59.04;MQRankSum=0.00;QD=22.22;ReadPosRankSum=8.000e-03;SOR=0.166;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:116,12,0
chr1	76269372	rs5745323	T	C	2482.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=5.486;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
chr1	76269460	rs5745325	G	A	3777.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.775e+00;DB;DP=44;ExcessHet=3.9794;FS=0.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=-3.660e-01;SOR=0.629;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:396,0,628
chr1	76276353	rs12122939	T	C	747.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=32;ExcessHet=3.9794;FS=1.274;MQ=59.72;MQRankSum=1.09;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=1.40;SOR=0.415;VQSLOD=1.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,11:32:99:280,0,578
chr1	76280543	rs1144339	A	G	928.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=3.442;VQSLOD=18.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr1	76287973	rs11404402	C	CA	130.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.45;ReadPosRankSum=0.189;SOR=1.493;VQSLOD=6.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:34:34,0,48
chr1	76332994	rs5745430	C	T	672.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=-5.240e-01;SOR=0.557;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:61:61,0,74
chr1	76333163	rs5745433	T	G	1837.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-8.300e-02;SOR=0.684;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:819,0,460
chr1	76342858	rs5745442	T	G	196.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=7;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.350e-01;SOR=0.086;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,133
chr1	76343689	rs5745443	TA	T	364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=-7.120e-01;SOR=1.493;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:50:158,0,50
chr1	76344011	rs1493367	C	A	3144.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=0.431;SOR=0.723;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,25:71:99:613,0,1249
chr1	76344711	rs5745449	A	T	6131.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DB;DP=92;ExcessHet=3.9794;FS=5.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=0.479;SOR=0.978;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,44:92:99:990,0,1062
chr1	76344920	rs5745453	G	A	2401.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.49;SOR=8.189;VQSLOD=23.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:323,24,0
chr1	76345640	rs2307077	G	T	2604.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020e-01;DB;DP=31;ExcessHet=3.9794;FS=3.224;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=0.140;SOR=1.161;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:31:99:570,0,330
chr1	76346920	rs5745466	C	CAT	13384.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.76;SOR=2.072;VQSLOD=6.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3723,250,0
chr1	76347026	.	T	C	1642.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DP=145;ExcessHet=3.0103;FS=2.111;MQ=60.00;MQRankSum=0.00;QD=11.33;ReadPosRankSum=0.561;SOR=0.509;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,65:145:99:1651,0,1966
chr1	76349534	rs5745485	C	G	1891.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411e+00;DB;DP=33;ExcessHet=1.5490;FS=0.000;MQ=59.93;MQRankSum=-1.451e+00;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=0.157;SOR=0.812;VQSLOD=1.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,10:33:99:292,0,823
chr1	76356648	rs5745507	G	A	850.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=-1.910e-01;SOR=2.019;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:91:91,0,285
chr1	76363505	rs2029680	A	C	1616.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=15;ExcessHet=1.5490;FS=3.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.08;ReadPosRankSum=0.328;SOR=2.368;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,13:15:9:319,0,9
chr1	76365111	rs5745543	A	T	275.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=-7.920e-01;SOR=2.303;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:64:168,0,64
chr1	76378275	rs5745547	G	C	1204.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.95;ReadPosRankSum=-1.282e+00;SOR=4.112;VQSLOD=14.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:30:144,0,30
chr1	76378357	rs71690142	ATAT	A	2777.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.576e+00;DB;DP=16;ExcessHet=0.4576;FS=5.898;MQ=60.00;MQRankSum=0.00;QD=36.31;SOR=2.188;VQSLOD=4.68;culprit=QD	GT:AD:DP:GQ:PL	1/1:1,15:16:21:488,21,0
chr1	76608351	rs2152388	A	T	120.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.842;SOR=0.412;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,67
chr1	76608491	rs289686	T	C	1362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.440e-01;DB;DP=44;ExcessHet=3.9794;FS=0.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=0.320;SOR=0.886;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,19:44:99:0|1:76608491_T_C:742,0,2694:76608491
chr1	76608507	rs172333	C	G	1561.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DB;DP=48;ExcessHet=3.9794;FS=0.828;MQ=60.00;MQRankSum=0.00;QD=17.35;ReadPosRankSum=0.405;SOR=0.528;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,22:48:99:0|1:76608491_T_C:843,0,2898:76608491
chr1	76608508	rs71071986	CT	C	1561.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=48;ExcessHet=3.9794;FS=0.828;MQ=60.00;MQRankSum=0.00;QD=17.35;ReadPosRankSum=0.430;SOR=0.528;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,22:48:99:0|1:76608491_T_C:846,0,2877:76608491
chr1	76608532	rs597362	T	G	1861.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=55;ExcessHet=3.9794;FS=1.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=-4.890e-01;SOR=0.495;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,27:55:99:0|1:76608491_T_C:976,0,2893:76608491
chr1	76608777	rs184095	C	T	1018.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=20;ExcessHet=3.9794;FS=2.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=0.272;SOR=1.863;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:703,60,0
chr1	76771475	rs10782610	G	T	6730.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.34;SOR=2.427;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1668,153,0
chr1	76773440	rs76783328	T	G	1098.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=1.74;SOR=0.846;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:239,0,363
chr1	76878156	rs17098942	C	T	1020.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DB;DP=28;ExcessHet=3.9794;FS=4.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.968;SOR=0.320;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:378,0,433
chr1	77042405	rs315029	G	A	1287.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.109e+00;DB;DP=38;ExcessHet=3.9794;FS=5.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.33;SOR=0.204;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:450,0,808
chr1	77042631	rs28439552	G	C	1437.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=63;ExcessHet=3.9794;FS=0.853;MQ=60.00;MQRankSum=0.00;QD=12.61;ReadPosRankSum=2.12;SOR=0.874;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,26:63:99:746,0,1235
chr1	77093010	rs680442	C	T	3631.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.78;SOR=3.471;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:77093010_C_T:1810,123,0:77093010
chr1	77093011	rs587021	T	G	3631.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.10;SOR=3.126;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,41:41:99:1|1:77093010_C_T:1810,123,0:77093010
chr1	77093180	rs1184626	C	A	8562.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=0.839;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4182,422,0
chr1	77094242	rs41291522	G	A	396.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.51;ReadPosRankSum=-5.350e-01;SOR=2.303;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,12:13:6:404,0,6
chr1	77166140	rs61784815	A	G	1071.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942e+00;DB;DP=49;ExcessHet=3.9794;FS=13.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-8.320e-01;SOR=2.564;VQSLOD=11.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,18:49:99:518,0,994
chr1	77333355	rs76305167	C	T	1436.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441e+00;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.896;SOR=0.756;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,56:106:99:1445,0,1299
chr1	77334268	rs114586767	G	A	3906.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.438e+00;DB;DP=353;ExcessHet=3.0103;FS=0.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-5.400e-02;SOR=0.658;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:175,178:353:99:3915,0,4345
chr1	77334292	rs201548881	G	GCAGCAA	5497.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.930e-01;DB;DP=286;ExcessHet=3.0103;FS=0.908;MQ=60.00;MQRankSum=0.00;QD=19.36;ReadPosRankSum=0.495;SOR=0.775;VQSLOD=6.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:149,135:286:99:5506,0,7683
chr1	77558057	rs1048575	G	C	748.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DB;DP=14;ExcessHet=6.9897;FS=5.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-1.940e-01;SOR=1.483;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:126,0,224
chr1	77588131	rs7531782	T	C	139.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-2.310e-01;SOR=0.527;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:148,0,168
chr1	77627096	rs839825	G	A	7395.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=2.073;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2466,192,0
chr1	77632270	rs1721144	T	C	1003.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.93;SOR=6.439;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr1	77634948	rs1779199	G	A	7721.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.298e+00;DB;DP=72;ExcessHet=3.0103;FS=4.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=-4.570e-01;SOR=1.104;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,71:72:99:2085,175,0
chr1	77672215	rs5775376	A	AT	110.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.88;ReadPosRankSum=-6.100e-02;SOR=1.402;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:119,0,181
chr1	77763071	rs1167207	A	G	2746.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=2.247;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:661,66,0
chr1	77763542	rs1167206	G	A	5947.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=0.735;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1806,180,0
chr1	77806434	rs5775390	TA	T	201.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.83;SOR=4.174;VQSLOD=6.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
chr1	77876406	rs10782647	C	T	179.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.93;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	77876827	rs41306633	T	C	927.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e+00;DB;DP=76;ExcessHet=3.0103;FS=3.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-7.800e-01;SOR=0.348;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:936,0,1059
chr1	77883412	rs1532507	C	T	760.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.330e-01;DB;DP=60;ExcessHet=3.0103;FS=1.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-2.425e+00;SOR=0.914;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,26:60:99:769,0,1034
chr1	77952156	rs145717573	A	G	176.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830e+00;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=59.93;MQRankSum=-7.280e-01;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-1.675e+00;SOR=0.141;VQSLOD=0.951;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:185,0,293
chr1	78001881	rs10873948	T	C	2039.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=2.468;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:577,48,0
chr1	78001947	rs12095064	A	G	696.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=0.598;SOR=0.608;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:72:113,0,72
chr1	78024284	rs6675743	T	C	2328.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=35;ExcessHet=3.9794;FS=0.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=-8.270e-01;SOR=0.885;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:568,0,367
chr1	78024345	rs79671213	C	CTAT	5117.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=60;ExcessHet=3.9794;FS=1.226;MQ=60.00;MQRankSum=0.00;QD=27.66;ReadPosRankSum=1.34;SOR=0.813;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,37:60:99:1484,0,925
chr1	78031994	rs7552291	A	G	942.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=1.07;SOR=2.235;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:175,0,134
chr1	78033981	rs145860524	AAAATG	A	1627.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=24;ExcessHet=3.9794;FS=0.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=0.993;SOR=0.848;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,10:24:99:372,0,807
chr1	78034156	.	CAA	C,CA	443.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.760e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=0.00;SOR=1.542;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,5,2:8:16:132,16,28,69,0,68
chr1	78045369	rs1565852	G	A	1233.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729e+00;DB;DP=32;ExcessHet=3.9794;FS=2.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-1.447e+00;SOR=0.381;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:290,0,632
chr1	78046630	rs17385754	G	A	575.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617e+00;DB;DP=77;ExcessHet=3.0103;FS=1.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=-2.300e-01;SOR=0.477;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,30:77:99:584,0,1250
chr1	78098003	rs41292270	A	T	1395.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=125;ExcessHet=3.0103;FS=3.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.113;SOR=1.031;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,52:125:99:1404,0,1889
chr1	78178976	rs6603958	T	A	1690.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=46;ExcessHet=3.9794;FS=1.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=1.21;SOR=0.512;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:706,0,615
chr1	78183861	rs11162378	G	A	341.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=-1.693e+00;SOR=1.244;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:205,0,139
chr1	78184325	rs12142671	A	G	796.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.731;SOR=0.620;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:361,0,384
chr1	78200005	rs3767037	T	C	894.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=0.935;SOR=0.693;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:35:332,35,0
chr1	78201745	rs2296227	G	T	2072.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;DB;DP=67;ExcessHet=3.9794;FS=2.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-2.240e-01;SOR=0.766;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:1026,0,616
chr1	78201889	rs12121287	T	A	566.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.31;ReadPosRankSum=-3.780e-01;SOR=0.693;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,16:20:91:575,0,91
chr1	78206682	rs2274123	A	C	873.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.497;SOR=0.602;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:190,0,141
chr1	78272902	rs4949822	G	A	637.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=8;ExcessHet=3.9794;FS=1.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=0.854;SOR=0.368;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:69:69,0,150
chr1	78281002	rs11162386	T	C	849.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=12;ExcessHet=3.9794;FS=6.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.409;SOR=0.129;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:186,0,124
chr1	78383467	rs1749913	G	A	901.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=0.352;SOR=0.540;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:618,51,0
chr1	78390046	rs5775431	C	CA	1163.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=27;ExcessHet=3.9794;FS=3.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.331;SOR=1.062;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,27:27:84:727,84,0
chr1	78399207	rs4483454	C	G	474.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.500e-02;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=1.04;SOR=1.002;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:203,18,0
chr1	78414310	.	C	CA	474.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-01;DP=25;ExcessHet=6.9897;FS=0.000;MQ=59.82;MQRankSum=-6.030e-01;QD=5.86;ReadPosRankSum=0.199;SOR=0.678;VQSLOD=0.454;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,7:25:99:106,0,174
chr1	78429182	rs115157000	C	G	222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-5.650e-01;SOR=0.473;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:231,0,139
chr1	78430689	rs11409017	A	AG	9469.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=1.490;VQSLOD=5.58;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2293,186,0
chr1	78471060	rs11384806	T	TC	417.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=1.15;SOR=4.332;VQSLOD=3.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:19:214,19,0
chr1	78478500	rs375749748	CACAA	C	197.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=1.38;SOR=0.180;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	78478675	rs3790586	G	A	2300.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.802e+00;DB;DP=35;ExcessHet=3.9794;FS=1.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.243;SOR=0.940;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1203,105,0
chr1	78481511	rs1964711	G	A	272.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=4.174;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0
chr1	78481640	rs1039863	G	A	3518.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.349;DB;DP=57;ExcessHet=3.9794;FS=4.815;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=1.94;SOR=1.098;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1833,171,0
chr1	78546703	rs628451	G	A	630.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.81;ReadPosRankSum=0.967;SOR=4.294;VQSLOD=13.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr1	78601465	rs3838409	C	CT	531.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DB;DP=34;ExcessHet=3.0103;FS=3.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=1.14;SOR=0.260;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,22:34:99:540,0,259
chr1	78958277	rs35978825	C	T	450.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=0.686;SOR=0.770;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:140,0,454
chr1	78963305	rs1322935	A	C	506.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=-5.240e-01;SOR=3.912;VQSLOD=15.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:151,0,25
chr1	78963437	rs1322934	G	A	2236.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591e+00;DB;DP=36;ExcessHet=1.5490;FS=4.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=-2.700e-01;SOR=0.239;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:485,0,634
chr1	79094593	rs273257	A	G	4026.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=0.796;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1001,96,0
chr1	79095350	.	A	G	497.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.81;ReadPosRankSum=-7.940e-01;SOR=0.836;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:506,0,626
chr1	79355596	rs1061728	A	G	3680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=1.715;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1033,99,0
chr1	79357360	rs2275902	G	C	4338.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-6.320e-01;SOR=0.673;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:870,0,908
chr1	79358743	rs10640737	C	CA	454.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=32;ExcessHet=6.9897;FS=0.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.69;ReadPosRankSum=0.566;SOR=0.595;VQSLOD=6.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,9:32:99:135,0,313
chr1	79358827	rs1968956	G	T	690.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DB;DP=65;ExcessHet=3.0103;FS=4.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-1.660e-01;SOR=0.836;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:699,0,938
chr1	79383300	rs5775467	CA	C	865.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=23;ExcessHet=3.9794;FS=0.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=1.77;SOR=0.527;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,10:23:99:299,0,392
chr1	79383458	rs12569007	A	T	1797.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040e+00;DB;DP=77;ExcessHet=3.9794;FS=1.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=0.591;SOR=0.597;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:941,0,1010
chr1	79385761	rs12032838	C	T	857.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.720e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.31;ReadPosRankSum=-1.292e+00;SOR=3.528;VQSLOD=17.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:194,15,0
chr1	79387242	rs3811440	C	T	4668.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.318e+00;DB;DP=60;ExcessHet=3.9794;FS=3.414;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=-1.500e-02;SOR=1.042;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:859,0,920
chr1	79392410	rs17102419	G	A	473.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=0.00;SOR=1.230;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:155,0,28
chr1	79392756	rs12754818	C	A	2053.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=80;ExcessHet=3.9794;FS=4.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.699;SOR=1.075;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,35:80:99:932,0,1125
chr1	79401927	rs61770681	A	G	1943.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.37;DB;DP=65;ExcessHet=3.9794;FS=12.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.624;SOR=1.749;VQSLOD=14.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,29:65:99:844,0,960
chr1	79402254	rs1489396	G	A	186.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.54;SOR=3.611;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	79403335	rs1352555	T	C	518.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.67;ReadPosRankSum=1.09;SOR=1.508;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:215,0,167
chr1	79403751	rs985277	T	G	2269.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DB;DP=89;ExcessHet=3.9794;FS=1.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.524;SOR=0.655;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,37:89:99:950,0,1321
chr1	79411888	rs723898	T	C	506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=14;ExcessHet=3.9794;FS=3.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=1.81;SOR=0.105;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:270,0,199
chr1	79411968	rs41313381	C	A	696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.988;SOR=0.569;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:705,0,755
chr1	79471959	rs1571991	T	G	144.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.96;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:68,0,31
chr1	79472141	rs1571992	C	A	2914.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=25;ExcessHet=3.0103;FS=2.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.80;ReadPosRankSum=0.083;SOR=1.191;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:263,0,388
chr1	81967508	rs114868480	A	G	2046.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.11;DB;DP=78;ExcessHet=3.9794;FS=13.088;MQ=59.18;MQRankSum=-2.157e+00;NEGATIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-1.364e+00;SOR=1.692;VQSLOD=-2.097e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,36:78:99:0|1:81967495_A_AGC:1307,0,1696:81967495
chr1	81967539	rs6663514	A	G	845.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104e+00;DB;DP=77;ExcessHet=3.0103;FS=13.866;MQ=59.02;MQRankSum=2.38;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=1.42;SOR=0.778;VQSLOD=-5.683e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,36:77:99:1|0:81967495_A_AGC:854,0,1504:81967495
chr1	81967962	rs1044343	T	C	4893.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.793;DB;DP=72;ExcessHet=3.9794;FS=13.740;MQ=55.62;MQRankSum=-2.453e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=-8.900e-02;SOR=1.355;VQSLOD=-5.474e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2350,216,0
chr1	81967987	rs1324376	T	C	5077.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.020e-01;DB;DP=82;ExcessHet=3.9794;FS=5.705;MQ=57.59;MQRankSum=-3.170e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=0.399;SOR=1.022;VQSLOD=0.045;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2501,246,0
chr1	81969071	rs4650561	A	T	6968.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DB;DP=246;ExcessHet=3.9794;FS=1.111;MQ=53.83;MQRankSum=1.19;NEGATIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=2.10;SOR=0.605;VQSLOD=-3.073e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,141:246:99:3661,0,2617
chr1	81969284	rs1108500	G	T	1773.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.76;DB;DP=34;ExcessHet=3.9794;FS=14.953;MQ=59.02;MQRankSum=1.71;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=-1.000e+00;SOR=2.970;VQSLOD=-7.501e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,17:34:99:582,0,439
chr1	82373114	rs5775649	C	CT	509.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=3.912;VQSLOD=6.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr1	82402364	rs142993868	TAATC	T	715.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-8.950e-01;SOR=0.818;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,19:42:99:724,0,1327
chr1	82415814	rs9438715	T	C	3493.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=3.000;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:901,84,0
chr1	82416220	rs2148630	G	A	1976.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=18;ExcessHet=3.0103;FS=5.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.89;ReadPosRankSum=-5.340e-01;SOR=2.303;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:352,0,206
chr1	82417552	rs7413275	T	G	1261.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.000e-03;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=-1.146e+00;SOR=0.435;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:233,0,162
chr1	82421596	rs11163397	C	T	9421.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=1.195;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2790,270,0
chr1	82431853	rs200568074	A	G	788.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612e+00;DB;DP=63;ExcessHet=3.0103;FS=2.195;MQ=60.00;MQRankSum=0.00;QD=12.51;ReadPosRankSum=0.00;SOR=0.430;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,35:63:99:797,0,747
chr1	82437670	rs144957268	ATTTGT	A	1365.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e-02;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.351;SOR=0.892;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,14:23:99:0|1:82437670_ATTTGT_A:541,0,886:82437670
chr1	82437682	rs41292976	G	A	1375.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970e-01;DB;DP=21;ExcessHet=6.9897;FS=3.221;MQ=60.00;MQRankSum=0.00;QD=20.54;ReadPosRankSum=-7.100e-02;SOR=1.319;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,13:21:99:0|1:82437670_ATTTGT_A:541,0,886:82437670
chr1	82450053	rs6598979	C	T	430.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.82;SOR=4.977;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	84355734	rs71826512	AAGAACTTCAAGGAT	A	4666.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DB;DP=28;ExcessHet=3.0103;FS=1.271;MQ=60.00;MQRankSum=0.00;QD=32.46;ReadPosRankSum=-8.470e-01;SOR=0.993;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,17:28:99:673,0,1544
chr1	84365653	rs980418	T	G	668.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.49;ReadPosRankSum=1.04;SOR=3.500;VQSLOD=17.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:35:116,0,35
chr1	84383079	rs17534614	G	A	3818.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233e+00;DB;DP=36;ExcessHet=3.0103;FS=1.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=-2.700e-01;SOR=1.188;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:469,0,551
chr1	84383491	rs12135028	T	C	580.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=-1.611e+00;SOR=0.997;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:109,0,189
chr1	84464468	rs1871925	C	G	944.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.50;ReadPosRankSum=0.652;SOR=0.892;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:127,0,102
chr1	84640691	rs582201	T	G	6979.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.01;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=-5.150e-01;SOR=0.236;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1719,171,0
chr1	84640834	rs12132002	T	G	1173.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=16;ExcessHet=6.9897;FS=1.224;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=-9.420e-01;SOR=0.997;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:190,0,227
chr1	84641304	rs2812001	A	C	654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=-1.620e-01;SOR=0.957;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,22:36:99:663,0,382
chr1	84669904	rs150047896	TTTTA	T	66.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,148
chr1	84701251	rs600674	T	C	3137.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.35;ReadPosRankSum=-1.100e+00;SOR=0.960;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:359,0,164
chr1	84764475	rs316643	C	G	276.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=-7.230e-01;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:285,0,247
chr1	84791239	rs315555	T	C	1171.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=3.912;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:178,15,0
chr1	84810345	rs186405	G	A	807.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.66;ReadPosRankSum=-9.920e-01;SOR=3.442;VQSLOD=18.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr1	84810396	rs315528	A	C	1317.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.795e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=2.09;SOR=0.638;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:459,39,0
chr1	84810815	rs315527	A	G	9471.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=0.945;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2791,281,0
chr1	84853957	rs665074	A	T	5093.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=2.140;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1858,158,0
chr1	84854282	rs663708	C	T	1343.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.03;SOR=5.486;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:327,24,0
chr1	84864256	rs3738573	G	C	2672.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.070e-01;DB;DP=64;ExcessHet=6.9897;FS=2.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.395;SOR=0.543;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,38:64:99:935,0,630
chr1	84867610	rs3754274	G	A	826.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DB;DP=29;ExcessHet=3.9794;FS=4.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.103e+00;SOR=1.387;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:266,0,610
chr1	84873835	rs1981254	A	G	1250.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.198;SOR=0.647;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,25:33:99:718,0,203
chr1	84874242	rs3116406	C	G	2164.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.850e-01;DB;DP=67;ExcessHet=3.9794;FS=0.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-1.510e-01;SOR=0.807;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:1051,0,679
chr1	84876711	rs3216015	C	CA	1614.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=1.41;SOR=0.784;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,15:34:99:504,0,666
chr1	84876731	rs1506700	T	G	1052.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=27;ExcessHet=3.9794;FS=2.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.632;SOR=0.381;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:403,0,422
chr1	84878380	rs3116423	A	G	2507.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=1.578;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:53:544,53,0
chr1	84880380	rs3768250	T	C	1131.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010e-01;DB;DP=43;ExcessHet=3.9794;FS=3.888;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-2.430e-01;SOR=1.127;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:582,0,603
chr1	84944989	rs2292191	A	G	2457.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=43;ExcessHet=1.5490;FS=1.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=-1.270e+00;SOR=0.951;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,16:43:99:441,0,767
chr1	84945339	rs17374048	C	T	174.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=0.366;SOR=3.611;VQSLOD=15.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:28:183,0,28
chr1	84946486	rs72948421	G	A	325.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.490e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=-5.530e-01;SOR=1.609;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:334,0,136
chr1	84946745	rs7413066	C	T	2996.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=2.200;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1079,90,0
chr1	84948417	rs1911159	T	A	114.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.99;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:16:65,0,16
chr1	84960753	rs141300216	AAATAG	A	639.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.64;ReadPosRankSum=0.201;SOR=1.519;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,16:24:99:648,0,343
chr1	84960864	rs115310357	A	G	1706.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=143;ExcessHet=3.0103;FS=3.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-2.360e-01;SOR=0.442;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,64:143:99:1715,0,2023
chr1	84963000	rs1246159	A	G	1348.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144e+00;DB;DP=35;ExcessHet=1.5490;FS=1.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=0.778;SOR=1.253;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:479,0,414
chr1	84967676	.	GA	G	806.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DP=40;ExcessHet=3.0103;FS=1.278;MQ=60.00;MQRankSum=0.00;QD=20.16;ReadPosRankSum=-1.510e+00;SOR=0.856;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,25:40:99:815,0,440
chr1	84971926	rs41284589	G	A	1094.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505e+00;DB;DP=115;ExcessHet=3.0103;FS=0.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-1.402e+00;SOR=0.780;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,46:115:99:1103,0,1934
chr1	84982259	rs2794218	T	C	1353.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210e-01;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=0.691;SOR=0.660;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:187,0,167
chr1	84986213	rs5775789	AT	A	2973.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=2.562;VQSLOD=6.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:783,84,0
chr1	85016177	rs1400777	A	G	4814.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113e+00;DB;DP=68;ExcessHet=1.5490;FS=4.919;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=1.29;SOR=0.363;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,37:68:99:875,0,787
chr1	85031492	rs41284599	T	C	453.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=1.67;SOR=0.693;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,18:26:99:462,0,183
chr1	85040024	.	CAGCAGCGCT	C	852.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410e+00;DP=56;ExcessHet=3.0103;FS=6.141;MQ=60.00;MQRankSum=0.00;QD=15.22;ReadPosRankSum=-1.356e+00;SOR=0.226;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,26:56:99:860,0,3134
chr1	85113203	rs2994949	T	C	3412.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=51;ExcessHet=1.5490;FS=3.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=0.113;SOR=1.112;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:674,0,598
chr1	85113229	rs1057746	A	G	1948.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e+00;DB;DP=53;ExcessHet=3.9794;FS=2.959;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.545;SOR=0.579;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:632,0,598
chr1	85115298	rs75610458	T	C	60.62	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:1:69,0,1
chr1	85115417	rs116361074	G	A	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.249;SOR=0.465;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:286,0,387
chr1	85115852	rs2298076	G	T	235.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.51;SOR=0.693;VQSLOD=18.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	85121206	rs17113387	C	T	327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=51;ExcessHet=3.0103;FS=2.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.42;ReadPosRankSum=0.465;SOR=1.314;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,15:51:99:336,0,877
chr1	85121255	rs4537578	A	G	1215.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e-01;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=1.21;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.931;SOR=0.687;VQSLOD=2.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,23:40:99:585,0,417
chr1	85123819	rs2994440	A	G	895.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.744e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=1.83;SOR=2.448;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:363,30,0
chr1	85128262	rs2911563	A	G	3011.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.392e+00;DB;DP=66;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=0.934;SOR=0.766;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2223,198,0
chr1	85128280	rs2994437	T	C	3464.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.99;SOR=3.185;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1766,141,0
chr1	85128305	rs11164033	G	C	1351.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=34;ExcessHet=3.9794;FS=11.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=1.64;SOR=2.757;VQSLOD=13.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:651,0,458
chr1	85128409	rs2911564	T	A	451.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.24;ReadPosRankSum=-2.720e-01;SOR=2.049;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:325,24,0
chr1	85131641	rs2911566	G	C	529.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=-1.025e+00;SOR=3.383;VQSLOD=18.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:317,24,0
chr1	85131982	rs3096445	T	G	1600.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.646;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.06;ReadPosRankSum=1.62;SOR=1.739;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:613,51,0
chr1	85137218	rs112550508	C	G	301.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.192e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-1.148e+00;SOR=0.804;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:310,0,298
chr1	85331808	rs113879527	G	GAGA	5404.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.680e-01;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=-1.279e+00;SOR=0.636;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2150,144,0
chr1	85392324	rs6681025	C	T	1109.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=85;ExcessHet=3.0103;FS=4.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.035;SOR=0.954;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,47:85:99:1118,0,905
chr1	85412436	rs589332	C	T	257.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=1.000e-03;SOR=1.179;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,180
chr1	85417779	rs679961	G	A	1287.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=17;ExcessHet=3.9794;FS=2.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=0.995;SOR=1.814;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:285,0,324
chr1	85462750	rs920340	T	C	602.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=4.294;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	85488030	rs2028304	G	A	6713.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=0.991;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2188,207,0
chr1	85488154	rs2039814	G	C	2328.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=3.647;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1042,81,0
chr1	85507074	rs6576744	G	T	767.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=4.712;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	85537502	rs4907131	T	A	768.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=0.652;SOR=0.880;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr1	85537522	rs4907132	T	C	931.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=1.15;SOR=0.892;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	85538947	rs4907133	A	G	812.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.16;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=1.37;SOR=2.226;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:218,18,0
chr1	85547270	rs10782539	A	G	2113.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=3.219;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:822,66,0
chr1	85547809	rs7542253	G	A	333.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=4.407;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	85547945	rs7534574	T	C	2102.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=1.875;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:912,87,0
chr1	85550156	rs146215625	A	AAT	196.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=2.303;VQSLOD=6.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:108,9,0
chr1	85551468	rs111823967	A	ATCAGTTTTTCT	1555.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=6.994;VQSLOD=6.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:48:720,48,0
chr1	85555672	rs1417351	A	C	807.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=2.584;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:529,51,0
chr1	85559118	rs11304107	CT	C	4005.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=2.531;VQSLOD=5.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1184,114,0
chr1	85559396	rs41289039	G	C	1306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=110;ExcessHet=3.0103;FS=1.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=1.10;SOR=0.533;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,47:110:99:1315,0,1680
chr1	85559452	rs709762	A	G	6144.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=94;ExcessHet=3.0103;FS=1.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.72;ReadPosRankSum=-9.700e-01;SOR=0.852;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,50:94:99:1302,0,1033
chr1	85560313	rs709765	T	C	1978.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.059e+00;DB;DP=20;ExcessHet=3.0103;FS=2.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.54;ReadPosRankSum=-4.940e-01;SOR=0.420;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:247,0,386
chr1	85561546	rs709766	T	C	4283.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=47;ExcessHet=3.0103;FS=0.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=0.711;SOR=0.874;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:572,0,536
chr1	85561872	rs817596	C	T	1065.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=6.593;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	85564138	rs817489	A	G	3753.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=37;ExcessHet=3.0103;FS=5.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=0.486;SOR=1.466;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:488,0,481
chr1	85570521	rs10559350	GTTC	G	304.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=0.524;SOR=0.818;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,141
chr1	85573705	rs11427716	A	AC,ACT	3114.05	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=3.258;VQSLOD=5.94;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,10:14:78:565,289,248,118,0,78
chr1	85574021	rs709759	G	A	1020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=6;ExcessHet=6.9897;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=-1.240e+00;SOR=1.923;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:149,0,66
chr1	85589842	rs17121745	A	G	1519.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.635;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=1.01;SOR=0.666;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,64:135:99:1528,0,1685
chr1	85589939	rs11356964	GT	G	2648.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=100;ExcessHet=3.9794;FS=0.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=1.51;SOR=0.612;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,46:100:99:1418,0,1710
chr1	85592126	rs817474	G	T	614.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=12;ExcessHet=3.0103;FS=2.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=-1.016e+00;SOR=1.911;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:424,36,0
chr1	85594392	rs2305930	T	C	773.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=61;ExcessHet=3.0103;FS=2.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-8.020e-01;SOR=0.665;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:782,0,778
chr1	85594573	rs2305931	T	C	107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=-1.154e+00;SOR=0.269;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:116,0,293
chr1	85595533	.	G	T	33.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119e+00;DP=16;ExcessHet=3.0103;FS=6.168;MQ=60.00;MQRankSum=0.00;QD=2.08;ReadPosRankSum=-8.770e-01;SOR=0.020;VQSLOD=20.70;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:42:0|1:85595533_G_T:42,0,1030:85595533
chr1	85595534	.	A	C	33.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677e+00;DP=16;ExcessHet=3.0103;FS=6.168;MQ=60.00;MQRankSum=0.00;QD=2.08;ReadPosRankSum=-7.980e-01;SOR=0.020;VQSLOD=20.72;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:42:0|1:85595533_G_T:42,0,1030:85595533
chr1	85595645	rs1020770	C	T	1198.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DB;DP=58;ExcessHet=3.9794;FS=0.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=-1.510e-01;SOR=0.781;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,24:58:99:583,0,866
chr1	85598422	rs74582723	G	A	52.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.50;ReadPosRankSum=0.366;SOR=1.802;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:60:60,0,155
chr1	85598527	rs36118758	TC	T	3896.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=2.833;VQSLOD=5.75;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1282,126,0
chr1	85598679	rs145165915	T	TA	1604.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150e-01;DB;DP=120;ExcessHet=3.0103;FS=6.991;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-1.093e+00;SOR=1.065;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,62:120:99:1613,0,1441
chr1	85624423	rs79898762	A	C	296.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-2.340e-01;SOR=0.412;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:305,0,449
chr1	85624549	rs709786	C	T	15546.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=1.323;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4445,446,0
chr1	85624864	rs817412	G	A	8893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=1.583;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2208,213,0
chr1	85644174	rs817440	G	A	185.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	85647713	rs817444	T	C	3082.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=3.056;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:762,60,0
chr1	85648620	rs817443	C	T	10695.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=0.753;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3134,330,0
chr1	85655916	rs56191061	G	A	975.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DB;DP=87;ExcessHet=3.0103;FS=0.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=1.46;SOR=0.538;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,35:87:99:984,0,1393
chr1	85656596	rs12021868	T	C	76.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=2.303;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	85666156	rs12121540	T	G	6300.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506e+00;DB;DP=190;ExcessHet=3.9794;FS=1.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.063;SOR=0.752;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,108:190:99:2790,0,2131
chr1	85666912	rs817458	T	C	128.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.62;SOR=1.022;VQSLOD=19.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr1	85724328	rs4949926	C	T	2512.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=87;ExcessHet=3.9794;FS=6.507;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=1.07;SOR=0.375;VQSLOD=6.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1151,0,1106
chr1	85724581	rs11161573	G	A	65.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=2.303;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	85725353	rs112918702	GCCGGAAA	G	706.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DB;DP=31;ExcessHet=3.9794;FS=7.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=1.11;SOR=1.913;VQSLOD=5.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,9:31:99:308,0,1652
chr1	85741684	rs4949928	T	C	426.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.044;SOR=0.653;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,15:20:91:435,0,91
chr1	85741921	rs2735594	G	C	7321.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.000e-03;DB;DP=98;ExcessHet=3.0103;FS=2.830;MQ=59.77;MQRankSum=1.20;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=0.753;SOR=0.907;VQSLOD=1.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3079,294,0
chr1	85742012	rs11576939	G	C	1157.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DB;DP=77;ExcessHet=3.0103;FS=5.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.632;SOR=0.262;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1166,0,1120
chr1	85742155	rs78416998	G	A	163.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-2.830e-01;SOR=1.179;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:172,0,262
chr1	85787114	rs233116	A	T	3269.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.76;SOR=2.049;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:848,75,0
chr1	85870340	rs7526667	A	T	376.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.18;SOR=3.258;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	85930272	rs4001153	GAC	G	4453.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;DB;DP=43;ExcessHet=3.0103;FS=4.150;MQ=60.00;MQRankSum=0.00;QD=28.73;ReadPosRankSum=-1.740e-01;SOR=1.213;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:43:99:1423,128,0
chr1	86046561	rs2297140	C	A	2436.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.19;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.85;ReadPosRankSum=-1.156e+00;SOR=4.323;VQSLOD=12.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1645,112,0
chr1	86046924	rs2297141	G	A	2172.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=47;ExcessHet=1.5490;FS=2.660;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=-1.290e-01;SOR=1.282;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1642,102,0
chr1	86119898	rs2274738	A	G	472.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=22;ExcessHet=3.0103;FS=2.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=-1.368e+00;SOR=0.208;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:481,0,254
chr1	86167957	rs1764298	C	T	2027.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=40;ExcessHet=3.9794;FS=5.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=0.907;SOR=1.300;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:505,0,489
chr1	86173298	rs1539444	C	T	1084.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148e+00;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=0.654;SOR=0.630;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,46:100:99:1093,0,1394
chr1	86202016	rs1481200	C	T	10082.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544e+00;DB;DP=92;ExcessHet=3.0103;FS=2.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=1.50;SOR=0.522;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,47:92:99:1159,0,1262
chr1	86210546	rs7547023	G	A	2530.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.78;ReadPosRankSum=1.84;SOR=1.179;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:258,0,267
chr1	86211325	rs10747324	G	A	2543.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056e+00;DB;DP=19;ExcessHet=3.0103;FS=4.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.41;ReadPosRankSum=-1.472e+00;SOR=0.144;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:286,0,302
chr1	86246849	rs313722	A	C	2816.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=42;ExcessHet=3.9794;FS=7.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=1.56;SOR=1.385;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:532,0,418
chr1	86248948	rs11369327	C	CT	34.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:17:43,0,17
chr1	86249063	rs313724	C	T	1900.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.750e-01;DB;DP=14;ExcessHet=3.0103;FS=4.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-1.140e+00;SOR=0.137;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:237,0,194
chr1	86249911	rs313725	A	G	3602.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=47;ExcessHet=3.9794;FS=11.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=2.30;SOR=0.757;VQSLOD=17.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:653,0,607
chr1	86252025	rs12746325	A	G	1637.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;DB;DP=36;ExcessHet=6.9897;FS=0.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-1.460e-01;SOR=0.770;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:521,0,423
chr1	86289082	rs1842579	C	T	265.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-5.240e-01;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:104,0,65
chr1	86308225	rs1010058	C	A	467.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:72,0,34
chr1	86340193	rs11161696	G	T	333.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650e-01;DB;DP=10;ExcessHet=3.0103;FS=2.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.728;SOR=1.721;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:20:20,0,227
chr1	86340262	rs12136023	C	A	747.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=23;ExcessHet=3.9794;FS=4.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.68;SOR=1.371;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,5:23:99:134,0,471
chr1	86340705	rs2086495	G	T	72.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.319;SOR=0.916;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:80,0,32
chr1	86340794	rs1564516	T	C	1053.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=14;ExcessHet=3.0103;FS=2.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.48;ReadPosRankSum=-8.180e-01;SOR=0.288;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:169,0,269
chr1	86340880	rs1564515	A	G	2376.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=40;ExcessHet=3.9794;FS=3.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=1.42;SOR=1.155;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:619,0,346
chr1	86341153	rs12122234	G	A	1013.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=10;ExcessHet=3.9794;FS=4.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=1.83;SOR=2.012;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:212,0,105
chr1	86361384	rs4912449	C	T	1609.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=2.891;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=4.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:97:97,0,113
chr1	86361802	rs7541806	C	G	3452.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=62;ExcessHet=3.9794;FS=4.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=-6.210e-01;SOR=0.407;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:665,0,936
chr1	86362184	rs35593147	A	AT	582.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DB;DP=21;ExcessHet=6.9897;FS=1.583;MQ=59.92;MQRankSum=0.00;QD=7.02;ReadPosRankSum=0.216;SOR=1.159;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,12:21:99:254,0,143
chr1	86375654	rs1502657	C	G	4294.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=66;ExcessHet=3.9794;FS=1.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=1.42;SOR=0.678;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,37:66:99:840,0,650
chr1	86436797	rs625872	C	T	458.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.59;ReadPosRankSum=-5.240e-01;SOR=0.793;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:244,24,0
chr1	86453237	rs11799965	T	G	1259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.617e+00;DB;DP=39;ExcessHet=3.9794;FS=9.093;MQ=59.97;MQRankSum=1.39;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-1.170e-01;SOR=1.595;VQSLOD=0.326;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,25:39:99:670,0,404
chr1	86453409	rs589698	C	T	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.742e+00;DB;DP=30;ExcessHet=3.0103;FS=4.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-1.748e+00;SOR=0.177;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:354,0,535
chr1	86482958	rs17128726	T	A	381.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458e+00;DB;DP=26;ExcessHet=3.0103;FS=7.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-8.570e-01;SOR=0.105;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:390,0,357
chr1	86487981	rs516213	G	A	2122.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=0.207;SOR=0.765;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:444,0,591
chr1	86487992	rs5775882	A	AACAG	2694.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=30;ExcessHet=3.9794;FS=1.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=1.15;SOR=0.972;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,14:30:99:535,0,914
chr1	86497769	rs582141	C	G	259.02	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.38;ReadPosRankSum=-8.420e-01;SOR=2.093;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr1	86554813	rs56934354	G	GA	662.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=16;ExcessHet=3.9794;FS=1.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.850;SOR=1.432;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,11:16:99:0|1:86554813_G_GA:477,0,345:86554813
chr1	86554821	rs12405791	G	A	714.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-02;DB;DP=19;ExcessHet=3.9794;FS=1.448;MQ=60.00;MQRankSum=0.00;QD=18.31;ReadPosRankSum=1.19;SOR=1.047;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,12:19:99:0|1:86554813_G_GA:474,0,366:86554813
chr1	86578449	rs2039602	A	C	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=-4.440e-01;SOR=0.223;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,4:13:99:0|1:86578449_A_C:141,0,677:86578449
chr1	86578453	rs11161738	C	T	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-9.840e-01;SOR=0.269;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:86578449_A_C:141,0,677:86578449
chr1	86590915	rs2174767	G	A	12246.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=1.011;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4075,351,0
chr1	86590948	rs11161746	A	G	1086.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DB;DP=107;ExcessHet=3.0103;FS=0.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.067;SOR=0.762;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,42:107:99:1095,0,1797
chr1	86591837	rs11161747	G	A	8278.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940e-01;DB;DP=81;ExcessHet=3.0103;FS=1.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=-1.223e+00;SOR=0.868;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1144,0,938
chr1	86809063	rs272490	T	A	445.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.31;ReadPosRankSum=1.15;SOR=3.767;VQSLOD=15.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:101,0,29
chr1	86814688	rs272491	C	T	232.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.868;SOR=0.307;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,161
chr1	86818572	rs272496	T	C	5236.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=129;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=0.035;SOR=0.704;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,69:129:99:1727,0,1393
chr1	86818813	rs272497	T	C	430.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-4.640e-01;SOR=1.371;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:227,0,203
chr1	86818846	rs272498	G	A	121.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=1.65;SOR=0.527;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,106
chr1	86820267	rs1182098	C	T	3159.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=79;ExcessHet=1.5490;FS=4.489;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.35;ReadPosRankSum=-6.210e-01;SOR=1.147;VQSLOD=7.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,36:79:99:956,0,1115
chr1	86821194	rs10676142	A	ACT	681.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.47;ReadPosRankSum=0.00;SOR=2.200;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:68:68,0,206
chr1	86821746	rs17129092	A	G	664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-7.720e-01;SOR=0.859;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,24:38:99:673,0,282
chr1	86821910	rs59280239	CTAAAA	C	332.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=0.921;SOR=0.184;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,259
chr1	86821974	rs1182099	T	A	390.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=6;ExcessHet=1.5490;FS=6.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=1.83;SOR=1.447;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,150
chr1	86838158	rs421105	C	T	2813.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DB;DP=36;ExcessHet=1.5490;FS=0.989;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.30;ReadPosRankSum=0.460;SOR=0.927;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:406,0,419
chr1	86847955	rs272516	G	A	957.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=51;ExcessHet=3.9794;FS=6.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.64;SOR=1.499;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,19:51:99:487,0,804
chr1	86890931	rs1158505	T	A	1062.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=0.832;SOR=0.892;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:180,0,212
chr1	86891005	rs1158506	C	A	2282.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=1.31;SOR=0.767;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:342,0,253
chr1	86894371	rs1334147	G	T	2807.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DB;DP=53;ExcessHet=3.9794;FS=2.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=0.544;SOR=0.912;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:607,0,672
chr1	86894496	rs2151709	T	C	866.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=10;ExcessHet=3.9794;FS=5.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=0.319;SOR=0.148;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:63:63,0,264
chr1	86896354	rs4292929	G	A	1548.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792e+00;DB;DP=18;ExcessHet=3.0103;FS=3.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=-1.629e+00;SOR=2.437;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,5:18:89:89,0,458
chr1	86896706	rs3737673	C	A	1277.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247e+00;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=0.425;SOR=0.784;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:235,0,384
chr1	86897970	rs12407985	T	A	1839.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=17;ExcessHet=1.5490;FS=3.263;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=-1.173e+00;SOR=2.215;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,10:17:99:0|1:86897970_T_A:399,0,453:86897970
chr1	86897973	rs1334150	T	C	2749.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=-1.173e+00;SOR=1.558;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,10:17:99:0|1:86897970_T_A:399,0,453:86897970
chr1	86898409	rs1413431	C	A	327.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=-3.190e-01;SOR=1.112;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:56:56,0,227
chr1	86900332	rs17449526	T	C	9219.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556e+00;DB;DP=191;ExcessHet=1.5490;FS=3.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=0.742;SOR=0.741;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,94:191:99:2240,0,2420
chr1	86900372	rs17409304	C	G	9097.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DB;DP=194;ExcessHet=1.5490;FS=2.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=-9.560e-01;SOR=0.982;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,93:194:99:2224,0,2421
chr1	86900491	rs56408800	C	T	2921.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327e+00;DB;DP=51;ExcessHet=1.5490;FS=1.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=1.32;SOR=1.022;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,20:51:99:589,0,1006
chr1	86904993	rs11161831	T	A	352.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=2.12;SOR=0.191;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:70:70,0,140
chr1	86905053	rs2791466	C	T	134.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.22;ReadPosRankSum=0.967;SOR=0.941;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:71,0,29
chr1	86906114	rs1981082	T	C	914.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.897;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.55;ReadPosRankSum=0.711;SOR=0.610;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr1	86909703	rs3820039	T	C	1061.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.082e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-8.550e-01;SOR=0.790;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:252,0,239
chr1	86939130	rs2145412	C	T	5613.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.400e+00;DB;DP=71;ExcessHet=3.0103;FS=0.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=-1.900e-02;SOR=0.811;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1989,212,0
chr1	86939390	rs2180762	G	A	5403.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.53;SOR=1.905;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1761,153,0
chr1	86952324	rs2734705	A	G	3551.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DB;DP=59;ExcessHet=3.9794;FS=0.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=1.00;SOR=0.744;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,35:59:99:1024,0,581
chr1	86954453	rs2075631	G	A	322.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=0.524;SOR=1.609;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:25:109,0,25
chr1	86954880	rs5744379	G	A	305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=27;ExcessHet=3.0103;FS=2.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-1.679e+00;SOR=0.160;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:314,0,534
chr1	86956785	rs2753342	C	G	2122.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.18;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=1.67;SOR=0.804;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:696,51,0
chr1	86959014	rs2753346	T	C	643.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.520e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.26;ReadPosRankSum=1.42;SOR=1.445;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:307,24,0
chr1	86959173	rs2791494	T	C	3964.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=0.501;SOR=0.701;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,39:61:99:962,0,479
chr1	86959424	rs1321690	C	A	356.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=1.37;SOR=1.022;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr1	86959748	rs5744403	A	T	136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-1.100e+00;SOR=0.693;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:145,0,139
chr1	86959796	rs1321689	C	T	1720.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=31;ExcessHet=6.9897;FS=0.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.213;SOR=0.925;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:301,0,549
chr1	86961210	rs5744408	C	T	587.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DB;DP=66;ExcessHet=3.0103;FS=2.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=0.637;SOR=1.119;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,26:66:99:596,0,1009
chr1	86964075	rs2753356	T	G	422.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=0.967;SOR=3.442;VQSLOD=17.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:357,24,0
chr1	86964131	rs11302985	CT	C	852.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-1.200e-01;SOR=0.651;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:525,39,0
chr1	86965419	rs1882753	T	C	1788.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074e+00;DB;DP=64;ExcessHet=3.9794;FS=1.340;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=1.23;SOR=0.567;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,34:64:99:873,0,849
chr1	87029602	rs2231586	T	C	214.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=-4.130e-01;SOR=0.425;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,1:4:31:31,0,115
chr1	87036746	rs772599	C	A	3386.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;DB;DP=139;ExcessHet=3.9794;FS=1.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.067;SOR=0.583;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,72:139:99:1666,0,1448
chr1	87045574	rs2231602	T	A	260.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=1.07;SOR=0.446;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:96:269,0,96
chr1	87045896	rs4001061	TCCTACA	T	7063.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=170;ExcessHet=3.9794;FS=6.822;MQ=60.00;MQRankSum=0.00;QD=19.40;ReadPosRankSum=2.47;SOR=0.899;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:78,92:170:99:3469,0,5242
chr1	87046169	rs17416766	G	A	352.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100e-02;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=-5.980e-01;SOR=0.914;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:105,0,108
chr1	87100226	rs57650790	CTT	C	234.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:87100226_CTT_C:243,0,239:87100226
chr1	87100238	rs11161862	T	G	234.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=0.241;SOR=1.402;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:87100226_CTT_C:243,0,239:87100226
chr1	87101245	rs2292831	A	G	3541.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=46;ExcessHet=3.0103;FS=1.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.85;ReadPosRankSum=1.12;SOR=1.007;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,16:46:99:409,0,747
chr1	87101375	rs2292830	C	G	6591.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-01;DB;DP=76;ExcessHet=3.0103;FS=1.259;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=0.080;SOR=0.579;VQSLOD=7.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,29:76:99:652,0,1180
chr1	87101649	rs2292829	T	C	557.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.050e-01;DB;DP=52;ExcessHet=3.0103;FS=1.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-7.400e-02;SOR=0.916;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:566,0,767
chr1	87200729	rs263483	C	G	3061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DB;DP=112;ExcessHet=3.9794;FS=0.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.477;SOR=0.738;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,56:112:99:1415,0,1344
chr1	87458695	rs10873810	G	A	4431.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e+00;DB;DP=49;ExcessHet=3.0103;FS=5.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.53;ReadPosRankSum=-3.030e-01;SOR=0.252;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1578,147,0
chr1	87538182	rs34124612	TTG	T	13842.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.900e-01;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=-1.163e+00;POSITIVE_TRAIN_SITE;QD=33.25;ReadPosRankSum=0.738;SOR=0.684;VQSLOD=1.72;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,102:102:99:1|1:87538182_TTG_T:4588,307,0:87538182
chr1	87538200	rs10782592	G	A	14304.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.400e-01;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=-1.132e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.89;ReadPosRankSum=1.11;SOR=0.692;VQSLOD=1.36;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,115:115:99:1|1:87538182_TTG_T:4942,346,0:87538182
chr1	87538426	rs2390264	G	A	817.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.190e-01;DB;DP=8;ExcessHet=3.0103;FS=8.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=-3.190e-01;SOR=2.833;VQSLOD=17.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:285,24,0
chr1	87538962	rs1539610	G	A	2024.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=0.061;SOR=4.768;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:653,48,0
chr1	87549858	rs2798675	A	G	3168.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=31;ExcessHet=3.0103;FS=2.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.08;ReadPosRankSum=-2.590e-01;SOR=1.201;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1072,93,0
chr1	87558066	rs10568899	CCACATA	C	1661.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.31;SOR=5.031;VQSLOD=6.54;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	87563668	rs1199677	G	A	5044.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=34.66;SOR=2.643;VQSLOD=4.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1310,116,0
chr1	87570398	rs1621247	G	A	5232.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=63;ExcessHet=3.0103;FS=3.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.30;ReadPosRankSum=0.257;SOR=0.435;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2019,189,0
chr1	87598117	rs6686259	T	G	7315.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174e+00;DB;DP=86;ExcessHet=3.9794;FS=3.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=0.031;SOR=0.527;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,49:86:99:1365,0,1130
chr1	87599697	rs6576865	G	A	5768.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.260e-01;DB;DP=79;ExcessHet=3.0103;FS=0.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=0.643;SOR=0.788;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2464,237,0
chr1	87633761	rs10782593	C	T	1511.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=2.110;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:665,63,0
chr1	89225976	rs430600	T	C	2452.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DB;DP=42;ExcessHet=6.9897;FS=0.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.603;SOR=0.760;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,25:42:99:691,0,485
chr1	89236029	rs7541301	T	A	2138.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.976e+00;DB;DP=41;ExcessHet=6.9897;FS=3.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-1.520e-01;SOR=0.426;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,29:41:99:741,0,268
chr1	89250152	rs1772795	G	A	345.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=6.9897;FS=6.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.272;SOR=0.064;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:59:59,0,231
chr1	89271574	rs786906	T	C	3511.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.640e-01;DB;DP=83;ExcessHet=6.9897;FS=0.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-3.600e-02;SOR=0.740;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1130,0,1100
chr1	89280965	rs786918	A	G	2382.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DB;DP=48;ExcessHet=6.9897;FS=4.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=0.097;SOR=0.442;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,24:48:99:710,0,654
chr1	89322982	rs2794318	G	A	10348.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=0.750;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3347,316,0
chr1	89435014	rs201502206	C	CA	311.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e-01;DB;DP=25;ExcessHet=3.0103;FS=1.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=2.06;SOR=1.112;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,14:25:99:320,0,255
chr1	89478854	rs4656076	C	G	569.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.23;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.719;SOR=0.713;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:210,0,403
chr1	89478868	rs113490655	G	A	190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=27;ExcessHet=3.0103;FS=5.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.05;ReadPosRankSum=1.70;SOR=0.039;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,8:27:99:199,0,626
chr1	89479063	rs4656077	G	A	939.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821e+00;DB;DP=84;ExcessHet=3.0103;FS=13.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-1.084e+00;SOR=0.140;VQSLOD=14.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,40:84:99:948,0,1247
chr1	89479074	rs4656078	C	T	902.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=77;ExcessHet=3.0103;FS=7.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-5.510e-01;SOR=0.237;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,37:77:99:911,0,1053
chr1	89479758	rs3795543	T	C	4472.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.130e-01;DB;DP=75;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.319;SOR=0.675;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:862,0,1097
chr1	89486037	rs7555039	C	T	4583.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=67;ExcessHet=3.9794;FS=1.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=-6.980e-01;SOR=0.607;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2435,200,0
chr1	89520329	rs66614512	GAAAAAC	G	927.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=48;ExcessHet=3.0103;FS=2.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-7.880e-01;SOR=1.355;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,24:48:99:936,0,1841
chr1	89520574	rs10922554	C	A	3185.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.814e+00;DB;DP=51;ExcessHet=6.9897;FS=5.102;MQ=59.93;MQRankSum=0.00;QD=14.55;ReadPosRankSum=-9.790e-01;SOR=0.441;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,26:51:99:688,0,676
chr1	89520636	rs10922555	G	A	2124.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=26;ExcessHet=6.9897;FS=4.734;MQ=56.62;MQRankSum=-3.870e-01;NEGATIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=0.562;SOR=1.277;VQSLOD=-1.323e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,15:26:99:0|1:89520636_G_A:589,0,531:89520636
chr1	89520643	rs10922556	C	T	2094.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=25;ExcessHet=6.9897;FS=2.118;MQ=56.27;MQRankSum=-4.760e-01;NEGATIVE_TRAIN_SITE;QD=21.16;ReadPosRankSum=0.027;SOR=1.026;VQSLOD=-2.271e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,14:25:99:0|1:89520636_G_A:589,0,531:89520636
chr1	89522512	rs4376712	C	T	1038.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=81;ExcessHet=3.0103;FS=1.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-1.172e+00;SOR=1.043;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,39:81:99:1047,0,953
chr1	89522646	rs1048425	G	C	4861.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DB;DP=115;ExcessHet=6.9897;FS=1.736;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.097;SOR=0.811;VQSLOD=6.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,66:115:99:1758,0,1304
chr1	89524068	rs1328225	T	C	192.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=-2.100e-01;SOR=2.303;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:201,0,22
chr1	89525219	rs34279176	CT	C	288.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.280e-01;DB;DP=23;ExcessHet=6.9897;FS=1.168;MQ=59.92;MQRankSum=0.00;QD=5.77;ReadPosRankSum=-8.230e-01;SOR=1.071;VQSLOD=5.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,9:23:99:127,0,240
chr1	89525679	rs1328227	A	G	392.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=57.92;MQRankSum=-1.242e+00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.00;SOR=0.518;VQSLOD=0.149;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,102
chr1	89574026	rs1329119	G	A	4475.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.040e-01;DB;DP=54;ExcessHet=3.9794;FS=0.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=-9.840e-01;SOR=0.632;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,20:54:99:435,0,881
chr1	89575677	rs2026043	T	C	470.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-01;DB;DP=9;ExcessHet=6.9897;FS=4.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.076;SOR=1.438;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:173,0,137
chr1	89579941	rs2230338	T	C	2787.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013e+00;DB;DP=109;ExcessHet=6.9897;FS=0.415;MQ=59.86;MQRankSum=0.00;QD=8.60;ReadPosRankSum=0.392;SOR=0.739;VQSLOD=4.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,40:109:99:874,0,1807
chr1	89582690	rs1803632	G	C	2685.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DB;DP=48;ExcessHet=6.9897;FS=1.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=1.18;SOR=0.816;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:538,0,687
chr1	89583544	rs2209956	T	C	590.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=9;ExcessHet=6.9897;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-6.210e-01;SOR=0.169;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:110,0,188
chr1	89597654	rs41288379	G	A	68.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=2.303;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	89597755	rs942442	T	C	431.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=14;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=0.142;SOR=2.448;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:90:375,0,90
chr1	89598214	rs942441	G	T	621.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.01;SOR=5.670;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	89607479	rs6666846	G	T	2375.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DB;DP=50;ExcessHet=6.9897;FS=2.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-1.432e+00;SOR=0.862;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,22:50:99:0|1:89607479_G_T:797,0,1579:89607479
chr1	89607486	rs6658235	T	C	3011.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=46;ExcessHet=3.9794;FS=2.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-3.790e-01;SOR=0.905;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,19:46:99:0|1:89607479_G_T:714,0,1588:89607479
chr1	89612930	rs649641	G	A	217.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	89615979	rs586609	C	T	1644.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=19;ExcessHet=3.9794;FS=1.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=1.44;SOR=1.296;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:217,0,362
chr1	89618472	.	GA	G	2333.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DP=83;ExcessHet=3.9794;FS=0.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-6.600e-01;SOR=0.749;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,44:83:99:787,0,626
chr1	89618716	rs619478	C	T	340.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=1.01;SOR=3.816;VQSLOD=14.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:51:143,0,51
chr1	89637578	rs676913	G	A	12244.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-02;DB;DP=245;ExcessHet=3.9794;FS=0.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.583;SOR=0.793;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,117:245:99:2652,0,3007
chr1	89650850	rs623134	A	T	177.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=0.700;SOR=0.892;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:186,0,134
chr1	89652071	rs561042	T	C	1267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=103;ExcessHet=3.0103;FS=1.678;MQ=59.11;MQRankSum=-3.711e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-7.260e-01;SOR=0.904;VQSLOD=0.072;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,36:103:99:0|1:89652071_T_C:1276,0,16549:89652071
chr1	89652072	rs561037	C	T	1264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-02;DB;DP=103;ExcessHet=3.0103;FS=0.781;MQ=59.11;MQRankSum=-3.791e+00;NEGATIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-5.050e-01;SOR=0.869;VQSLOD=-1.547e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:68,35:103:99:0|1:89652071_T_C:1273,0,16719:89652071
chr1	89652078	rs608339	A	T	1217.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DB;DP=97;ExcessHet=3.0103;FS=1.743;MQ=59.06;MQRankSum=-3.884e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-7.410e-01;SOR=0.743;VQSLOD=0.133;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,32:97:99:0|1:89652071_T_C:1226,0,16777:89652071
chr1	89652087	rs1142890	C	T	1046.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.212e+00;DB;DP=94;ExcessHet=3.0103;FS=0.853;MQ=59.02;MQRankSum=-4.188e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.360e-01;SOR=0.532;VQSLOD=-2.630e-02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:66,28:94:99:0|1:89652071_T_C:1055,0,17181:89652071
chr1	89652088	rs1142889	C	G	1046.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=93;ExcessHet=3.0103;FS=0.845;MQ=59.01;MQRankSum=-4.266e+00;NEGATIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.102;SOR=0.591;VQSLOD=-1.791e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:66,27:93:99:0|1:89652071_T_C:1055,0,17181:89652071
chr1	89652090	rs1142888	T	G	920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=90;ExcessHet=3.0103;FS=1.905;MQ=58.98;MQRankSum=-4.286e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.134;SOR=0.479;VQSLOD=-1.530e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:64,26:90:99:0|1:89652071_T_C:929,0,17209:89652071
chr1	89652094	rs1142887	G	A	971.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=90;ExcessHet=3.0103;FS=0.882;MQ=58.98;MQRankSum=-4.405e+00;NEGATIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=0.405;SOR=0.567;VQSLOD=-1.935e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,25:90:99:0|1:89652071_T_C:980,0,16805:89652071
chr1	89652097	rs1142886	C	T	926.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DB;DP=93;ExcessHet=3.0103;FS=0.865;MQ=59.01;MQRankSum=-4.266e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-2.030e-01;SOR=0.540;VQSLOD=-1.332e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:66,27:93:99:0|1:89652071_T_C:935,0,16854:89652071
chr1	89652102	rs655260	A	T	955.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.69;DB;DP=96;ExcessHet=3.0103;FS=1.857;MQ=59.05;MQRankSum=-4.248e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-3.870e-01;SOR=0.446;VQSLOD=-1.194e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:68,28:96:99:0|1:89652071_T_C:964,0,16736:89652071
chr1	89661228	rs650448	T	G	4185.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=88;ExcessHet=6.9897;FS=9.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.175;SOR=1.174;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1181,0,1201
chr1	89664276	rs493470	T	C	427.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.566;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,173
chr1	89726592	rs535351	G	A	2239.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=21;ExcessHet=3.0103;FS=9.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.68;ReadPosRankSum=-2.035e+00;SOR=3.426;VQSLOD=13.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:855,63,0
chr1	89727870	rs76346754	A	T	1026.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.20;SOR=1.143;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1043,90,0
chr1	89732237	rs61729628	G	A	2230.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=1.793;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2247,198,0
chr1	89735314	rs3806338	G	A	1206.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=3.193;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1223,99,0
chr1	89833933	rs9428023	C	T	684.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.00;SOR=5.892;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:244,18,0
chr1	89845926	rs11361992	GT	G	4561.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=1.334;VQSLOD=5.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1472,147,0
chr1	89846152	rs4582772	C	T	1440.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343e+00;DB;DP=47;ExcessHet=3.9794;FS=4.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=1.02;SOR=0.346;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,32:47:99:822,0,462
chr1	89847153	rs1001847	G	A	372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DB;DP=32;ExcessHet=3.0103;FS=1.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.42;SOR=0.343;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:381,0,445
chr1	89847372	rs4658359	G	T	6790.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.473e+00;DB;DP=120;ExcessHet=3.9794;FS=1.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=0.198;SOR=0.772;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3631,360,0
chr1	89847411	rs4658360	C	T	5782.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.910e+00;DB;DP=113;ExcessHet=3.9794;FS=5.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.868;SOR=0.952;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3141,331,0
chr1	89847444	rs4658146	A	G	6127.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.014e+00;DB;DP=100;ExcessHet=3.9794;FS=14.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.835;SOR=0.754;VQSLOD=14.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,99:100:99:3064,258,0
chr1	89848557	rs10733091	A	C	361.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.88;ReadPosRankSum=0.967;SOR=2.494;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr1	89849201	rs928652	C	G	7199.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=0.805;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2331,234,0
chr1	89849350	rs928653	G	A	4821.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=0.965;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1372,132,0
chr1	89849441	rs928654	T	G	5840.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=0.715;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1704,147,0
chr1	89849574	rs928655	G	A	4207.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.119e+00;DB;DP=41;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.39;ReadPosRankSum=1.06;SOR=0.619;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,40:41:81:1278,81,0
chr1	89849742	rs959460	A	T	2983.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.300e-01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.08;ReadPosRankSum=0.091;SOR=0.505;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,37:38:72:1117,72,0
chr1	89851100	rs369061637	G	GT	472.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=1.83;SOR=3.912;VQSLOD=4.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:34:81,0,34
chr1	89885558	rs10737704	G	A	2711.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.55;POSITIVE_TRAIN_SITE;QD=33.90;SOR=0.743;VQSLOD=4.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:815,75,0
chr1	89885854	rs6673154	G	A	4974.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=1.236;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1658,166,0
chr1	89888371	rs6428540	A	G	637.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=5.784;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0
chr1	89888530	rs4261099	C	T	8374.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=55.84;QD=32.59;SOR=1.823;VQSLOD=3.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2771,266,0
chr1	89888552	rs4282800	T	A	10636.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=56.85;QD=31.94;SOR=1.437;VQSLOD=1.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3480,341,0
chr1	89888585	rs4415545	C	G	19233.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=58.08;QD=23.57;SOR=1.104;VQSLOD=0.807;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,134:134:99:1|1:89888585_C_G:6101,415,0:89888585
chr1	89888588	rs4506445	G	T	19299.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=58.25;QD=28.17;SOR=1.069;VQSLOD=2.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,139:139:99:1|1:89888585_C_G:6126,418,0:89888585
chr1	90048132	rs2279085	T	C	1219.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e-01;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-9.620e-01;SOR=0.698;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,47:81:99:1228,0,814
chr1	90049040	rs36084789	A	G	2306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788e+00;DB;DP=156;ExcessHet=3.0103;FS=2.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.216;SOR=0.503;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,94:156:99:2315,0,1467
chr1	90050583	.	C	T	102.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.45;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:73:111,0,73
chr1	90058242	rs34096201	G	GT	1208.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=44;ExcessHet=6.9897;FS=3.298;MQ=60.00;MQRankSum=0.00;QD=9.02;ReadPosRankSum=-1.470e+00;SOR=1.015;VQSLOD=5.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,21:44:99:400,0,461
chr1	90171835	rs6657969	C	T	8676.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=1.541;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2718,267,0
chr1	90178045	rs3112507	A	C	308.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=4.407;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr1	90178743	rs474536	A	G	7198.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=0.750;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2533,239,0
chr1	90459744	rs2703984	A	G	4601.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=48;ExcessHet=3.0103;FS=1.565;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=0.317;SOR=0.898;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1546,144,0
chr1	90459982	rs7556257	G	A	1321.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.025;DB;DP=6;ExcessHet=3.0103;FS=6.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.04;ReadPosRankSum=0.100;SOR=3.912;VQSLOD=14.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr1	90475947	rs12086543	A	G	1183.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.53;ReadPosRankSum=-2.120e-01;SOR=0.884;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:411,33,0
chr1	91177647	rs2390606	A	C	770.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=1.136;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:436,45,0
chr1	91179836	rs76709119	G	A	94.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.598;SOR=2.093;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:103,0,99
chr1	91181968	rs75698317	C	T	314.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-7.920e-01;SOR=0.593;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:20:223,0,20
chr1	91447985	rs358691	C	T	9033.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018e+00;DB;DP=111;ExcessHet=3.0103;FS=10.186;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=0.298;SOR=1.307;VQSLOD=5.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,54:111:99:1329,0,1458
chr1	91727781	rs580070	C	G	697.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=1.981;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:714,57,0
chr1	91728053	rs585898	G	A	7789.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=1.068;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2139,222,0
chr1	91728202	rs555432	T	C	1885.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=3.702;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:388,27,0
chr1	91739208	rs281964	C	T	3649.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=2.215;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1043,96,0
chr1	91739414	rs281963	G	A	3061.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.62;SOR=2.625;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:959,87,0
chr1	91740105	rs176019	T	G	7678.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=1.870;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1911,186,0
chr1	91742055	rs281959	T	C	360.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=2.494;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:377,33,0
chr1	91781304	rs281991	T	C	2589.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=30.32;SOR=3.136;VQSLOD=4.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:834,69,0
chr1	91781644	rs11589490	C	G	1109.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=1.061;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1126,107,0
chr1	91782031	rs11584478	T	C	1377.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=1.609;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1394,129,0
chr1	91784887	rs10493845	G	A	1263.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=1.179;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1280,114,0
chr1	91813184	rs281936	C	T	4269.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=3.593;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1176,99,0
chr1	91840784	rs282037	T	C	645.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=5.784;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr1	91841301	rs282036	T	C	3982.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.49;SOR=4.047;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1392,102,0
chr1	91844815	rs4658219	T	C	474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=24;ExcessHet=3.0103;FS=1.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=-7.360e-01;SOR=1.387;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:483,0,219
chr1	91846374	rs282033	C	A	11266.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=0.795;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3755,374,0
chr1	91846595	rs5776097	T	TA	2804.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=2.043;VQSLOD=6.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:441,36,0
chr1	91846654	rs282032	A	T	917.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.95;SOR=4.892;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	91850826	rs147504208	C	CA	389.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.28;SOR=0.976;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,17:29:99:398,0,257
chr1	91851253	rs282026	T	C	8339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.63;SOR=0.885;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2266,213,0
chr1	91859795	rs282009	T	C	18096.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=0.766;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,135:135:99:1|1:91859795_T_C:6059,409,0:91859795
chr1	91859801	rs11165778	A	G	6078.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=0.723;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,136:136:99:1|1:91859795_T_C:6095,412,0:91859795
chr1	91862200	rs4658221	C	T	78.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.59;ReadPosRankSum=0.391;SOR=1.426;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:87:87,0,318
chr1	91870626	rs55841380	C	T	899.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142e+00;DB;DP=51;ExcessHet=3.0103;FS=7.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.869;SOR=2.428;VQSLOD=18.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:908,0,771
chr1	91967142	rs13447458	G	GC	966.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=58;ExcessHet=3.0103;FS=2.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.296;SOR=1.371;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,31:58:99:975,0,811
chr1	91973557	rs553606	T	G	5086.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=46;ExcessHet=3.0103;FS=4.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.83;ReadPosRankSum=1.33;SOR=1.516;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1351,138,0
chr1	91974034	rs1876264	G	A	1099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=0.053;SOR=0.846;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:90:90,0,297
chr1	91980447	rs483532	A	G	5785.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.321e+00;DB;DP=78;ExcessHet=3.9794;FS=1.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.095;SOR=0.582;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,40:78:99:965,0,1112
chr1	91980649	rs10874758	G	A	2946.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460e-01;DB;DP=68;ExcessHet=6.9897;FS=5.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-1.680e-01;SOR=0.410;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,36:68:99:926,0,823
chr1	91989451	rs372113795	CTGTGTGTG	CTG,C	491.77	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.60;SOR=3.611;VQSLOD=5.70;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,2:4:56:168,69,58,67,0,56
chr1	91989572	rs488126	T	G	2920.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=31.40;SOR=3.383;VQSLOD=6.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1010,95,0
chr1	92100981	rs12144613	A	G	380.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.34;ReadPosRankSum=0.375;SOR=0.793;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,8:30:99:174,0,613
chr1	92107736	rs2182424	C	T	127.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=9;ExcessHet=3.0103;FS=7.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=2.66;SOR=3.241;VQSLOD=14.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:136,0,150
chr1	92107937	rs4658107	C	T	1917.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010e-01;DB;DP=44;ExcessHet=6.9897;FS=1.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-1.132e+00;SOR=0.841;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:437,0,721
chr1	92108119	rs12044983	A	G	1858.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449e+00;DB;DP=60;ExcessHet=6.9897;FS=1.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-9.600e-02;SOR=0.563;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:769,0,885
chr1	92108899	rs2493202	C	T	16546.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=0.729;VQSLOD=18.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,188:188:99:5913,562,0
chr1	92160941	rs1555889	C	T	100.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:109,0,28
chr1	92160957	rs1555887	C	T	303.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=1.65;SOR=1.445;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:114,0,66
chr1	92161024	rs17879140	C	CACAA	237.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=-6.190e-01;SOR=1.863;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:66:246,0,66
chr1	92174260	rs284878	A	G	12789.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.96;SOR=0.812;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4487,429,0
chr1	92174415	rs2038931	G	A	903.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=27;ExcessHet=3.9794;FS=5.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.212;SOR=1.653;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:334,0,456
chr1	92178249	.	AAC	A	42.85	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=21.42;SOR=0.169;VQSLOD=2.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chr1	92185185	rs2279455	T	C	913.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DB;DP=10;ExcessHet=3.9794;FS=1.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.707;SOR=1.355;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:61:223,0,61
chr1	92185657	rs1805112	C	T	2218.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=76;ExcessHet=3.9794;FS=4.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-2.180e-01;SOR=1.052;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1002,0,933
chr1	92195601	rs10783002	G	A	1828.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=29;ExcessHet=6.9897;FS=3.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=0.368;SOR=1.286;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,19:29:99:567,0,226
chr1	92200218	rs2306887	T	C	170.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:105,0,142
chr1	92200593	rs11165376	A	G	2780.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=31;ExcessHet=3.9794;FS=1.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=2.48;SOR=0.495;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:541,0,537
chr1	92200597	rs12124904	G	A	1048.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.350e-01;DB;DP=31;ExcessHet=3.9794;FS=1.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-1.640e-01;SOR=1.045;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:473,0,672
chr1	92200627	rs10874913	T	C	2512.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.42;SOR=3.551;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:587,54,0
chr1	92223976	rs284176	A	G	434.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:56:56,0,146
chr1	92224067	rs3738441	C	T	1009.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745e+00;DB;DP=33;ExcessHet=3.9794;FS=5.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=0.641;SOR=0.223;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:536,0,346
chr1	92224347	rs11165441	G	A	577.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863e+00;DB;DP=83;ExcessHet=3.0103;FS=1.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.95;ReadPosRankSum=-1.279e+00;SOR=0.931;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,27:83:99:586,0,1619
chr1	92262874	rs2810904	T	C	3959.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331e+00;DB;DP=76;ExcessHet=1.5490;FS=0.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-9.830e-01;SOR=0.864;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1024,0,950
chr1	92327045	rs1805110	G	A	913.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e+00;DB;DP=77;ExcessHet=3.0103;FS=3.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-1.039e+00;SOR=0.392;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,35:77:99:922,0,1237
chr1	92327126	rs1805109	C	T	1090.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.550e-01;DB;DP=134;ExcessHet=3.0103;FS=1.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.14;ReadPosRankSum=0.523;SOR=0.792;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,51:134:99:1099,0,2149
chr1	92428495	rs10783071	C	A	2987.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DB;DP=35;ExcessHet=3.0103;FS=4.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=0.434;SOR=1.577;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:566,0,362
chr1	92430435	.	C	CGT	210.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=-1.282e+00;SOR=3.056;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:19:117,0,19
chr1	92433595	rs7541712	C	T	41.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.44;ReadPosRankSum=-8.590e-01;SOR=0.693;VQSLOD=22.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:50:50,0,302
chr1	92442695	rs1156281	A	C	915.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030e-01;DB;DP=76;ExcessHet=3.0103;FS=1.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-4.420e-01;SOR=0.456;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:924,0,1068
chr1	92446112	rs11165911	T	C	1172.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=12;ExcessHet=3.0103;FS=6.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=3.000e-03;SOR=2.488;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:119,0,220
chr1	92446398	rs2303967	T	A	5791.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DB;DP=78;ExcessHet=3.0103;FS=5.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.13;ReadPosRankSum=-1.718e+00;SOR=1.149;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,26:78:99:617,0,1408
chr1	92447004	rs10875104	A	G	1781.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358e+00;DB;DP=12;ExcessHet=3.0103;FS=1.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.62;ReadPosRankSum=-9.310e-01;SOR=0.285;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:171,0,209
chr1	92456458	rs10875114	A	G	138.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.65;SOR=3.258;VQSLOD=19.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	92457843	rs10747493	C	T	2878.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=43;ExcessHet=3.9794;FS=2.309;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=0.616;SOR=0.932;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,25:43:99:617,0,462
chr1	92457969	rs55996004	CA	C	867.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.310e-01;DB;DP=24;ExcessHet=3.9794;FS=2.945;MQ=59.84;MQRankSum=0.00;QD=10.85;ReadPosRankSum=-2.350e-01;SOR=0.420;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,17:24:5:363,5,0
chr1	92458096	.	TTTG	T	72.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.14;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:40:81,0,40
chr1	92496014	.	C	CGTGTGTGTGT	313.68	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.71;SOR=3.912;VQSLOD=4.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	92508167	rs6692045	G	A	101.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=-3.190e-01;SOR=0.446;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:110,0,27
chr1	92508281	.	CA	C	180.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=20;ExcessHet=6.9897;FS=4.090;MQ=59.13;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.02;ReadPosRankSum=0.209;SOR=1.755;VQSLOD=6.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,4:20:47:47,0,197
chr1	92508673	rs6663816	T	G	166.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=0.253;SOR=1.179;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,112
chr1	92511379	.	A	G	90.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.07;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:99,0,99
chr1	92568263	rs527412	A	G	1517.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=42;ExcessHet=6.9897;FS=3.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.394;SOR=1.077;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:700,0,445
chr1	92573670	rs11166163	G	A	816.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=0.490;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,26:44:99:825,0,523
chr1	92646021	rs1483022	G	A	2993.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.490e-01;DB;DP=72;ExcessHet=6.9897;FS=1.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-1.460e+00;SOR=0.587;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,42:72:99:1129,0,774
chr1	92647223	rs560389	A	G	1794.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230e-01;DB;DP=43;ExcessHet=6.9897;FS=0.636;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-4.950e-01;SOR=0.756;VQSLOD=6.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,25:43:99:688,0,519
chr1	92647532	rs565156	C	A	9089.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.04;SOR=1.008;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2601,234,0
chr1	92649292	rs570368	A	T	418.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402e+00;DB;DP=6;ExcessHet=6.9897;FS=3.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.153;SOR=1.961;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:136,0,66
chr1	92649312	rs369017627	G	GT	392.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=9;ExcessHet=6.9897;FS=5.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.586;SOR=2.621;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:92649312_G_GT:204,0,104:92649312
chr1	92649335	rs569593	A	G	1193.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037e+00;DB;DP=20;ExcessHet=6.9897;FS=3.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-1.368e+00;SOR=1.391;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,13:20:99:0|1:92649312_G_GT:375,0,238:92649312
chr1	92708000	rs141160833	A	AAC	1761.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.230;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=-2.830e-01;SOR=4.271;VQSLOD=4.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:444,30,0
chr1	92709689	rs10676893	T	TAC	822.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.25;ReadPosRankSum=0.598;SOR=3.258;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr1	92711067	rs3131827	A	T	759.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-02;DB;DP=42;ExcessHet=3.9794;FS=0.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=1.03;SOR=0.877;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:504,0,654
chr1	92711235	rs74948025	A	G	458.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=1.62;SOR=0.560;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:467,0,488
chr1	92712266	rs974924	C	T	3670.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=1.188;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1134,116,0
chr1	92712598	rs35752451	GAA	G	2136.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.670e-01;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=0.827;SOR=0.683;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,26:67:99:960,0,1580
chr1	92712861	rs370824229	CAG	C	466.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=-2.410e-01;SOR=0.990;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:77:162,0,77
chr1	92728176	rs10875319	A	G	52.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=1.65;SOR=0.446;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,103
chr1	92735359	rs1487540	T	C	1362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=37;ExcessHet=3.9794;FS=0.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.12;SOR=0.572;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:628,0,449
chr1	92755943	rs3103178	G	A	501.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=0.444;SOR=0.922;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:233,0,277
chr1	92762982	rs142032681	A	C	436.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=34;ExcessHet=3.0103;FS=1.394;MQ=60.00;MQRankSum=0.00;QD=12.83;ReadPosRankSum=0.570;SOR=1.165;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:445,0,302
chr1	92764828	rs10875348	T	A	3855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=2.347;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1251,111,0
chr1	92765848	rs1542685	A	T	1741.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=58;ExcessHet=3.9794;FS=0.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=1.05;SOR=0.578;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,30:58:99:787,0,705
chr1	92772471	rs6702267	A	G	304.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=3;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=1.25;SOR=2.303;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:80,0,29
chr1	92799151	rs1487537	C	T	1460.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.943e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=-2.820e-01;SOR=0.904;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:580,48,0
chr1	92852390	rs11164312	T	C	580.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915e+00;DB;DP=15;ExcessHet=6.9897;FS=5.775;MQ=59.16;MQRankSum=-2.820e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=-1.800e-01;SOR=0.102;VQSLOD=-2.445e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:223,0,252
chr1	92852504	rs10747411	A	G	3229.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622e+00;DB;DP=49;ExcessHet=3.0103;FS=0.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=-8.250e-01;SOR=0.613;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1516,147,0
chr1	92941800	rs374164193	G	C	1391.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.07;ReadPosRankSum=-7.840e-01;SOR=0.610;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,49:77:99:1400,0,714
chr1	92944118	rs372208699	T	C	1485.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=123;ExcessHet=3.0103;FS=4.506;MQ=60.00;MQRankSum=0.00;QD=12.08;ReadPosRankSum=-2.540e-01;SOR=1.143;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,56:123:99:1494,0,1533
chr1	92944314	rs200902533	CAGAGAG	C,CAGAGAGAGAGAGAGAG	2731.15	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.02;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.79;MQRankSum=0.00;QD=35.31;ReadPosRankSum=0.337;SOR=2.366;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,12,8:27:99:1003,523,569,481,0,433
chr1	92946479	rs11164605	G	A	5072.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.170e-01;DB;DP=60;ExcessHet=3.0103;FS=5.852;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=-1.306e+00;SOR=1.109;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2047,179,0
chr1	92979124	rs6603978	G	A	380.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.15;ReadPosRankSum=-2.189e+00;SOR=2.303;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:128,0,108
chr1	92979354	rs6603979	A	G	7535.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.46;ReadPosRankSum=1.10;SOR=0.735;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2994,281,0
chr1	92979432	rs41286809	G	A	771.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913e+00;DB;DP=57;ExcessHet=3.0103;FS=7.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-1.675e+00;SOR=1.773;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,26:57:99:780,0,983
chr1	92979681	rs56325708	TTA	T	827.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.600e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.49;ReadPosRankSum=-7.780e-01;SOR=0.880;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr1	93029453	rs6656432	A	G	2221.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.03;ReadPosRankSum=-1.900e-01;SOR=1.153;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:768,63,0
chr1	93029479	rs68039687	A	T	423.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-2.380e-01;SOR=1.022;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,139
chr1	93071048	rs2050597	G	T	3436.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=1.21;SOR=0.898;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1042,87,0
chr1	93073228	rs11808092	C	A	1728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.820e-01;DB;DP=57;ExcessHet=6.9897;FS=1.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=1.27;SOR=0.589;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,21:57:99:484,0,949
chr1	93087689	rs11398075	T	TA	200.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.01;SOR=2.833;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
chr1	93089823	rs7514716	T	C	6496.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=75;ExcessHet=3.0103;FS=2.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-3.080e-01;SOR=0.871;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2092,224,0
chr1	93101670	rs41286811	C	T	1166.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=34;ExcessHet=3.9794;FS=1.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=-2.910e-01;SOR=0.355;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,23:34:99:702,0,318
chr1	93128514	rs11411366	T	TA	816.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=1.58;SOR=0.665;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,11:15:54:224,0,54
chr1	93128854	rs10747450	A	G	3847.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.490e-01;DB;DP=31;ExcessHet=3.0103;FS=1.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=0.672;SOR=0.473;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1128,93,0
chr1	93160002	rs34202284	G	A	1540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.150e-01;DB;DP=38;ExcessHet=6.9897;FS=0.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.637;SOR=0.816;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,22:38:99:613,0,386
chr1	93160902	rs2391199	T	C	9214.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=110;ExcessHet=3.0103;FS=3.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=1.54;SOR=0.499;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3489,329,0
chr1	93163385	rs7418336	A	G	1224.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724e+00;DB;DP=43;ExcessHet=3.9794;FS=4.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=2.17;SOR=0.368;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:578,0,551
chr1	93163633	rs1017008	C	T	1622.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.238e+00;DB;DP=10;ExcessHet=3.0103;FS=2.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.98;ReadPosRankSum=-3.660e-01;SOR=0.317;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:334,30,0
chr1	93167610	rs10218567	C	T	1398.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.53;ReadPosRankSum=0.982;SOR=1.516;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:453,36,0
chr1	93167854	rs10218670	A	G	2118.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.53;DB;DP=21;ExcessHet=3.0103;FS=1.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=1.04;SOR=0.527;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:733,63,0
chr1	93167998	rs200379331	CATAAA	C	78.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.59;SOR=0.693;VQSLOD=5.08;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	93298756	rs1854797	T	C	672.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=6;ExcessHet=6.9897;FS=1.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=0.842;SOR=0.404;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:71:71,0,145
chr1	93303451	rs6659942	G	T	714.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.08;ReadPosRankSum=-2.720e-01;SOR=2.833;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:279,21,0
chr1	93306317	rs10874744	G	A	2829.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=122;ExcessHet=3.9794;FS=4.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-2.990e-01;SOR=0.467;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,55:122:99:1387,0,1570
chr1	93308853	rs2244496	C	A	315.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=3.056;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:167,15,0
chr1	93311065	.	GAAA	G	165.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.52;ReadPosRankSum=0.812;SOR=0.527;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:7:171,0,7
chr1	93312142	rs12746956	A	G	1299.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=42;ExcessHet=6.9897;FS=3.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.415;SOR=1.179;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,16:42:99:485,0,741
chr1	93312192	rs200610101	C	CT	205.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.92;ReadPosRankSum=0.652;SOR=0.446;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,4:14:65:65,0,236
chr1	93312592	rs12062315	C	T	794.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;DB;DP=15;ExcessHet=6.9897;FS=1.941;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=0.00;SOR=1.488;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:310,0,154
chr1	93426866	rs945629	T	C	7170.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.62;SOR=1.704;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,48:48:99:1|1:93426866_T_C:2234,151,0:93426866
chr1	93426869	rs1415069	G	C	7483.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.96;SOR=1.668;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:93426866_T_C:2324,157,0:93426866
chr1	93426874	rs116489989	G	T	2729.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=55;ExcessHet=6.9897;FS=3.702;MQ=60.00;MQRankSum=0.00;QD=15.51;ReadPosRankSum=-4.320e-01;SOR=1.003;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:695,0,692
chr1	93545157	rs2815419	G	A	7566.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=34.55;SOR=1.216;VQSLOD=5.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2220,206,0
chr1	93576302	rs494745	T	G	1758.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.43;SOR=7.569;VQSLOD=24.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:494,36,0
chr1	93576334	rs41306163	T	C	306.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=-1.910e-01;SOR=1.802;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:96:315,0,96
chr1	93580402	rs11164874	T	A	113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.78;ReadPosRankSum=-1.298e+00;SOR=0.437;VQSLOD=21.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,6:30:99:122,0,687
chr1	93580581	rs2815427	G	C	12591.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.42;SOR=0.886;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3088,322,0
chr1	93580992	rs566843	C	T	4533.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300e-01;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=0.829;SOR=0.751;VQSLOD=6.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:585,0,975
chr1	93583818	rs34049352	CT	C	468.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=12;ExcessHet=3.9794;FS=5.920;MQ=59.61;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-1.720e-01;SOR=2.432;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,5:12:20:105,0,20
chr1	93584870	.	C	CT	279.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;DP=26;ExcessHet=3.0103;FS=2.555;MQ=60.00;MQRankSum=0.00;QD=11.64;ReadPosRankSum=0.243;SOR=1.098;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,15:26:99:288,0,175
chr1	93592577	rs490153	T	A	2054.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.62;ReadPosRankSum=1.97;SOR=1.248;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:368,0,341
chr1	93592692	rs489183	A	T	875.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=69;ExcessHet=3.0103;FS=5.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-4.600e-01;SOR=1.488;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,30:69:99:884,0,1020
chr1	93595115	.	ATT	A	89.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.12;ReadPosRankSum=0.674;SOR=1.270;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:38:51,0,38
chr1	93602194	rs2281524	C	T	4597.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DB;DP=59;ExcessHet=3.0103;FS=1.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=-2.880e-01;SOR=0.942;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,30:59:99:775,0,735
chr1	93645985	.	C	G	592.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.90;ReadPosRankSum=0.948;SOR=2.833;VQSLOD=18.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,15:18:72:601,0,72
chr1	93683210	rs624131	A	G	817.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.43;DB;DP=17;ExcessHet=1.5490;FS=7.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=-1.772e+00;SOR=2.494;VQSLOD=18.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:621,51,0
chr1	93683543	rs506556	C	G	180.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=3.611;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr1	93687091	rs797661	G	T	161.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.89;SOR=1.329;VQSLOD=19.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:178,18,0
chr1	93691855	rs34227600	GT	G	267.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=16;ExcessHet=3.9794;FS=2.221;MQ=60.00;MQRankSum=0.00;QD=5.45;ReadPosRankSum=0.471;SOR=1.042;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,13:16:25:258,0,25
chr1	93692081	rs35929850	AAT	A	60.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=0.693;VQSLOD=5.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr1	93698222	rs661566	C	G	602.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.96;SOR=4.174;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:619,48,0
chr1	93704793	rs5776176	CT	C	553.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=5.994;VQSLOD=6.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:570,57,0
chr1	93711998	rs658178	C	G	154.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=3.258;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr1	93712178	rs668944	C	T	67.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=2.303;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	93712532	rs670650	G	A	301.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.37;SOR=1.270;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:318,33,0
chr1	93724106	rs10874765	A	G	41.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.71;SOR=2.303;VQSLOD=18.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr1	93744055	rs10874767	G	A	2248.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.10;SOR=1.031;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2265,239,0
chr1	93998640	rs34814765	AT	A	3454.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;DB;DP=64;ExcessHet=6.9897;FS=3.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=0.261;SOR=1.062;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,33:64:99:1041,0,958
chr1	94002233	rs3767967	A	G	464.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-5.470e-01;SOR=0.484;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:20:182,0,20
chr1	94006401	rs55649797	CT	C	380.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.197;SOR=2.448;VQSLOD=6.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:34:34,0,55
chr1	94012287	rs237425	G	A	821.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=1.94;SOR=1.179;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:203,0,213
chr1	94041787	rs25569	G	GAC	5928.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-01;DB;DP=53;ExcessHet=3.0103;FS=1.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=0.231;SOR=0.532;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,26:53:99:946,0,1016
chr1	94054382	rs236319	T	C	1142.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=27;ExcessHet=1.5490;FS=3.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=-2.149e+00;SOR=1.371;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:452,0,253
chr1	94312482	rs5776191	T	TC	16966.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=59.49;POSITIVE_TRAIN_SITE;QD=27.35;SOR=0.706;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5974,484,0
chr1	94312528	rs147446599	G	GC	14732.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=59.23;QD=32.80;SOR=1.574;VQSLOD=3.81;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,110:110:99:1|1:94312528_G_GC:4689,329,0:94312528
chr1	94312533	rs202198870	G	GC	14287.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=59.08;QD=30.00;SOR=1.917;VQSLOD=4.73;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,98:98:99:1|1:94312528_G_GC:4447,298,0:94312528
chr1	94312542	.	G	GC	13711.73	PASS	AC=2;AF=1.00;AN=2;DP=95;ExcessHet=3.0103;FS=0.000;MQ=59.02;QD=28.87;SOR=1.997;VQSLOD=4.18;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,95:95:99:1|1:94312528_G_GC:4365,292,0:94312528
chr1	94312544	.	G	GC	13396.73	PASS	AC=2;AF=1.00;AN=2;DP=94;ExcessHet=3.0103;FS=0.000;MQ=58.99;QD=25.50;SOR=2.088;VQSLOD=3.68;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,94:94:99:1|1:94312528_G_GC:4320,289,0:94312528
chr1	94312554	.	A	AG	11866.73	PASS	AC=2;AF=1.00;AN=2;DP=82;ExcessHet=3.0103;FS=0.000;MQ=58.90;QD=33.44;SOR=2.196;VQSLOD=4.25;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,82:82:99:1|1:94312528_G_GC:3735,250,0:94312528
chr1	94312566	rs2391318	G	T	5982.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=58.77;QD=26.13;SOR=2.419;VQSLOD=1.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,71:71:99:1|1:94312528_G_GC:3285,220,0:94312528
chr1	94312567	rs2391319	T	C	5937.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=58.77;QD=25.93;SOR=2.419;VQSLOD=2.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,71:71:99:1|1:94312528_G_GC:3240,217,0:94312528
chr1	94312571	.	G	GC	5728.66	PASS	AC=2;AF=1.00;AN=2;DP=66;ExcessHet=3.0103;FS=0.000;MQ=58.74;QD=25.57;SOR=2.547;VQSLOD=4.46;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,66:66:99:1|1:94312528_G_GC:3150,211,0:94312528
chr1	94312573	.	G	GC	5569.66	PASS	AC=2;AF=1.00;AN=2;DP=65;ExcessHet=3.0103;FS=0.000;MQ=58.72;QD=25.32;SOR=2.600;VQSLOD=4.42;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,65:65:99:1|1:94312528_G_GC:3015,202,0:94312528
chr1	94312576	.	G	GC	10021.73	PASS	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MQ=58.65;QD=28.58;SOR=2.546;VQSLOD=4.65;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,59:59:99:1|1:94312528_G_GC:2835,190,0:94312528
chr1	94312579	.	G	GC	8834.21	PASS	AC=2;AF=1.00;AN=2;DP=50;ExcessHet=3.0103;FS=0.000;MQ=58.50;QD=26.27;SOR=2.906;VQSLOD=3.73;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,50:50:99:1|1:94312528_G_GC:2475,166,0:94312528
chr1	94312584	rs200230769	G	GC	8385.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=58.38;QD=29.27;SOR=3.429;VQSLOD=4.43;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,48:48:99:1|1:94312528_G_GC:2279,154,0:94312528
chr1	94458657	rs55665437	C	T	69.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=0.703;SOR=0.368;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:78:0|1:94458657_C_T:78,0,177:94458657
chr1	94471075	rs1762114	A	G	5875.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.090e-01;DB;DP=77;ExcessHet=3.0103;FS=4.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=-2.793e+00;SOR=0.366;VQSLOD=21.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2333,231,0
chr1	94471219	rs142316952	C	T	535.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=33;ExcessHet=3.0103;FS=12.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=-4.690e-01;SOR=2.955;VQSLOD=12.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:544,0,374
chr1	94474020	rs1191234	G	A	3995.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=3.935;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1447,102,0
chr1	94476555	rs537831	G	A	3319.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=3.716;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:854,66,0
chr1	94480037	rs2275033	C	T	2173.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=29;ExcessHet=3.9794;FS=9.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=1.09;SOR=1.497;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:977,87,0
chr1	94480439	rs2275034	T	C	1057.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.92;ReadPosRankSum=0.738;SOR=3.407;VQSLOD=18.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:478,33,0
chr1	94481068	rs914958	A	G	182.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.120e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-2.200e+00;SOR=1.609;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr1	94487545	rs61754053	G	A	834.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.580e-01;DB;DP=58;ExcessHet=3.0103;FS=2.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-1.502e+00;SOR=0.377;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,32:58:99:843,0,640
chr1	94495407	rs4147846	C	T	4592.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.18;ReadPosRankSum=0.125;SOR=0.607;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:94495407_C_T:1978,135,0:94495407
chr1	94495417	rs4147845	C	T	4336.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.424e+00;DB;DP=41;ExcessHet=3.0103;FS=1.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=40.38;ReadPosRankSum=-1.200e-02;SOR=0.518;VQSLOD=21.83;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,41:41:99:1|1:94495407_C_T:1869,126,0:94495407
chr1	94495487	rs4147844	G	A	1685.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.986;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=0.215;SOR=1.863;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:789,63,0
chr1	94495816	rs4147843	T	C	778.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.050e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=1.06;SOR=2.670;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:264,21,0
chr1	94495930	rs547806	T	C	5369.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=2.697;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1552,129,0
chr1	94496253	rs2297671	G	A	4236.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.276e+00;DB;DP=49;ExcessHet=3.0103;FS=9.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=0.028;SOR=1.807;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1699,146,0
chr1	94497178	rs4147841	G	A	2123.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.129;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=-4.570e-01;SOR=0.892;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:993,93,0
chr1	94503197	rs1889548	A	C	328.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.58;SOR=4.615;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	94507069	rs35094232	TA	T	832.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.75;SOR=6.869;VQSLOD=6.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:169,18,0
chr1	94511533	rs3789398	G	A	5292.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.443e+00;DB;DP=59;ExcessHet=3.0103;FS=0.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=-1.727e+00;SOR=0.923;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1872,176,0
chr1	94512893	rs544830	C	T	127.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-1.645e+00;SOR=0.941;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	94516985	rs1191231	A	C	518.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.65;SOR=5.283;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:535,39,0
chr1	94544135	rs4147887	A	AC	262.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DB;DP=13;ExcessHet=3.9794;FS=3.405;MQ=60.00;MQRankSum=0.00;QD=7.94;ReadPosRankSum=0.912;SOR=1.547;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:116,0,210
chr1	94544276	rs4147830	G	A	1398.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e+00;DB;DP=44;ExcessHet=6.9897;FS=3.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=0.618;SOR=0.471;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,13:44:99:307,0,880
chr1	94544326	rs3215952	GT	G	1340.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138e+00;DB;DP=21;ExcessHet=6.9897;FS=9.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-4.290e-01;SOR=0.222;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,6:21:99:159,0,498
chr1	94549083	rs574741	T	C	2313.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-5.150e-01;SOR=0.661;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:399,0,610
chr1	94574053	rs11165073	C	A	1530.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=24;ExcessHet=1.5490;FS=1.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=0.064;SOR=0.475;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:758,71,0
chr1	94574473	.	C	T	139.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.94;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:22:148,0,22
chr1	94576968	rs2297634	T	C	2358.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.360e-01;DB;DP=44;ExcessHet=1.5490;FS=2.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=-1.779e+00;SOR=1.179;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1548,132,0
chr1	94578548	rs4847281	T	C	2083.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.16;SOR=1.498;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:553,45,0
chr1	94586328	rs3789451	C	T	279.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=0.892;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:168,15,0
chr1	94639337	rs1330858	A	G	2234.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.33;SOR=4.731;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:819,60,0
chr1	94639447	rs1999272	C	T	8856.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=1.720;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2549,245,0
chr1	94645148	rs67114194	CA	C	248.29	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.221e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=58.39;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-9.670e-01;SOR=4.174;VQSLOD=3.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:6:17:96,17,0
chr1	94654225	rs1411703	C	G	370.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=4.615;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr1	94667062	rs111304569	TTCTCTCTCTCTCTC	T	606.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.32;SOR=0.976;VQSLOD=5.93;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:136,9,0
chr1	94667430	rs5776210	G	GA	1099.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.19;SOR=3.967;VQSLOD=4.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:142,15,0
chr1	94667970	rs1541098	T	C	782.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.790e-01;DB;DP=58;ExcessHet=3.0103;FS=3.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-4.560e-01;SOR=0.466;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:791,0,608
chr1	94668046	rs1541099	C	T	7678.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=0.862;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2091,188,0
chr1	94669758	rs6664141	G	C	257.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=2.584;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:139,12,0
chr1	94670784	rs10443184	T	C	2389.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418e+00;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=1.05;SOR=0.686;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:505,0,335
chr1	94674693	rs116647642	G	A	223.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430e-01;DB;DP=30;ExcessHet=3.0103;FS=1.496;MQ=60.00;MQRankSum=0.00;QD=7.44;ReadPosRankSum=0.530;SOR=1.153;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:232,0,394
chr1	94674723	rs6684237	G	A	6347.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.32;SOR=1.663;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1505,129,0
chr1	94674726	rs2274788	T	C	1330.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=43;ExcessHet=3.9794;FS=0.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.224;SOR=0.845;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:493,0,479
chr1	94921128	rs61772854	A	G	514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-03;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.77;ReadPosRankSum=-1.380e-01;SOR=1.270;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:301,0,125
chr1	94924046	rs2147794	A	G	713.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.87;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=2.23;SOR=0.746;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:349,0,242
chr1	94930345	rs16946	G	A	1893.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=81;ExcessHet=3.9794;FS=1.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-4.300e-02;SOR=0.864;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,39:81:99:938,0,1013
chr1	94941376	rs681187	G	A	1302.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=5.549;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
chr1	94964139	rs201875475	AT	A	115.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810e-01;DB;DP=32;ExcessHet=3.9794;FS=1.365;MQ=59.80;MQRankSum=0.00;QD=1.80;ReadPosRankSum=0.501;SOR=0.397;VQSLOD=5.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,4:32:8:8,0,598
chr1	94980671	rs3118109	C	G	11514.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=1.047;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3668,357,0
chr1	95001600	rs698946	A	C	8349.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=0.805;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2302,228,0
chr1	95211285	rs6541364	C	T	1195.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.160e-01;DB;DP=16;ExcessHet=6.9897;FS=3.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=0.415;SOR=1.485;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:403,0,129
chr1	95211525	rs1333953	G	A	4850.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=-6.000e-01;SOR=0.756;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,25:60:99:668,0,945
chr1	95211817	rs1760512	C	G	381.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=1.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-1.282e+00;SOR=0.330;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:31:81,0,31
chr1	95286094	rs10782992	G	T	5394.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=0.765;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1959,209,0
chr1	95286658	rs6676991	C	A	4990.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=54;ExcessHet=3.0103;FS=0.640;MQ=60.00;MQRankSum=0.00;QD=24.47;ReadPosRankSum=1.73;SOR=0.594;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1594,161,0
chr1	95286675	rs11274910	GTCCCAAATGTAAA	G	6748.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=47;ExcessHet=3.0103;FS=1.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.14;ReadPosRankSum=-2.130e-01;SOR=0.857;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2117,142,0
chr1	95290003	rs6687749	C	T	3774.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.336e+00;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=0.827;SOR=0.791;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1068,99,0
chr1	95290305	rs6541372	T	C	1587.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=3.145;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:535,39,0
chr1	95291076	rs3860351	G	A	387.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=4.804;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr1	95291366	rs10874894	A	G	7998.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=1.155;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2213,204,0
chr1	95303659	rs2893276	T	C	279	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.87;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	95305752	.	C	T	139.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.85;ReadPosRankSum=-1.282e+00;SOR=1.981;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:148,0,24
chr1	95330372	rs859098	G	A	4128.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=76;ExcessHet=3.9794;FS=2.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=1.53;SOR=0.881;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:853,0,887
chr1	95332864	rs12137650	C	T	2421.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.030e-01;DB;DP=49;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.328;SOR=0.683;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1584,147,0
chr1	95333068	rs859096	G	T	2213.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.072e+00;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=1.10;SOR=0.648;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1104,99,0
chr1	95333195	rs859095	G	A	741.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=5.892;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
chr1	95358096	rs859063	A	G	3559.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=67;ExcessHet=3.9794;FS=1.788;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-2.580e-01;SOR=0.831;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,65:67:99:2060,151,0
chr1	95365257	rs3216025	AT	A	944.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=12;ExcessHet=3.9794;FS=2.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=1.23;SOR=1.230;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:413,36,0
chr1	95367136	rs859059	G	A	2062.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.784;DB;DP=27;ExcessHet=3.0103;FS=3.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=1.05;SOR=1.640;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:979,81,0
chr1	95367649	rs859058	T	C	4141.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=55;ExcessHet=3.9794;FS=1.179;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=-4.560e-01;SOR=0.572;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1924,125,0
chr1	95367894	rs859057	A	C	3992.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.969;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.16;ReadPosRankSum=0.019;SOR=0.699;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1709,153,0
chr1	95368458	rs859055	G	A	509.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=0.652;SOR=1.179;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr1	95369198	rs11165268	G	C	1320.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=50;ExcessHet=3.9794;FS=1.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.546;SOR=0.960;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,18:50:99:488,0,877
chr1	95369211	rs859054	T	G	4611.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=-2.720e-01;SOR=0.696;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1609,138,0
chr1	95392593	rs11540278	C	T	1182.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=29;ExcessHet=3.9794;FS=9.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-9.400e-01;SOR=0.035;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:516,0,447
chr1	95427041	rs3831103	AT	A	1188.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.41;SOR=4.271;VQSLOD=4.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:186,21,0
chr1	95428414	rs2766005	G	A	3453.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=2.857;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:876,78,0
chr1	95428455	rs60283438	C	CT	1520.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=49;ExcessHet=6.9897;FS=6.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.105e+00;SOR=1.297;VQSLOD=5.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,17:49:99:342,0,440
chr1	95449033	rs2298162	T	C	789.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085e+00;DB;DP=12;ExcessHet=3.9794;FS=1.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-4.130e-01;SOR=0.914;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:392,36,0
chr1	95530591	rs12751061	A	T	1378.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=46;ExcessHet=3.9794;FS=0.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-7.920e-01;SOR=0.608;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:582,0,540
chr1	95530709	rs6674467	G	A	790.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=13;ExcessHet=3.9794;FS=2.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=-2.070e-01;SOR=0.293;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:291,0,173
chr1	95614215	rs76921353	G	A	1762.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=55;ExcessHet=3.9794;FS=6.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=1.79;SOR=1.246;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:791,0,665
chr1	95615678	rs76086699	T	C	573.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=2.43;SOR=0.619;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:219,0,248
chr1	95615888	rs35206271	T	C	582.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=1.24;SOR=0.806;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:299,0,477
chr1	95699594	rs3738171	A	G	1300.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=16;ExcessHet=3.9794;FS=10.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.73;ReadPosRankSum=0.103;SOR=2.694;VQSLOD=15.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,7:16:99:0|1:95699594_A_G:267,0,382:95699594
chr1	95699604	rs3738170	G	C	1297.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=17;ExcessHet=3.9794;FS=9.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.90;ReadPosRankSum=0.244;SOR=2.410;VQSLOD=17.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,7:17:99:0|1:95699594_A_G:264,0,413:95699594
chr1	95705615	rs640527	G	A	2788.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=40;ExcessHet=3.9794;FS=1.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.45;ReadPosRankSum=0.712;SOR=0.544;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:589,0,538
chr1	95709821	rs259358	T	C	11320.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=0.806;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3362,323,0
chr1	95709939	rs2296308	T	G	7359.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e-01;DB;DP=88;ExcessHet=3.9794;FS=0.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=2.24;SOR=0.661;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,41:88:99:1058,0,1379
chr1	95712050	rs148395594	TGAGACTCA	T	859.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-7.700e-02;SOR=0.643;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:396,0,778
chr1	96488081	rs161129	T	C	1559.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=68;ExcessHet=3.9794;FS=5.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.861;SOR=1.207;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,36:68:99:878,0,776
chr1	96488261	rs1146527	A	T	3991.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=55;ExcessHet=3.9794;FS=1.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=1.78;SOR=0.846;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,32:55:99:856,0,542
chr1	96488272	rs15686	C	A	1671.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277e+00;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.217;SOR=0.649;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:628,0,545
chr1	96488283	rs1146528	T	C	4695.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.95;SOR=2.374;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1144,95,0
chr1	96912659	rs10783045	A	G	1729.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=54;ExcessHet=3.9794;FS=6.699;MQ=55.64;MQRankSum=1.78;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=2.35;SOR=1.089;VQSLOD=-3.440e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:779,0,674
chr1	97187174	rs3748784	A	G	1901.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.490e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.36;ReadPosRankSum=0.328;SOR=3.098;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:71:71,0,145
chr1	97189091	rs3762411	G	A	8651.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801e+00;DB;DP=125;ExcessHet=3.0103;FS=3.110;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=-3.040e-01;SOR=0.521;VQSLOD=7.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,63:125:99:1414,0,1561
chr1	97189288	rs3762410	T	A	938.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869e+00;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-7.170e-01;SOR=0.429;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:359,0,711
chr1	97236130	rs3762409	G	A	735.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=0.674;SOR=3.816;VQSLOD=17.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,76
chr1	97250520	rs273873	G	T	690.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=1.47;SOR=1.329;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:63:63,0,169
chr1	97278671	rs41299549	G	C	743.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=59;ExcessHet=3.0103;FS=3.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-1.636e+00;SOR=1.230;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:752,0,861
chr1	97278804	rs273886	G	A	3687.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.090e-01;DB;DP=24;ExcessHet=3.0103;FS=1.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.35;ReadPosRankSum=-8.700e-02;SOR=0.913;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:340,0,407
chr1	97544760	rs17116357	C	G	43.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-2.820e-01;SOR=0.132;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:52:52,0,273
chr1	97544771	rs290855	T	C	1266.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.21;ReadPosRankSum=0.00;SOR=5.421;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:205,0,23
chr1	97547831	rs290854	G	A	5232.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=3.626;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1561,134,0
chr1	97658395	rs4950023	C	T	264.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.52;SOR=4.174;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr1	97771947	rs7556439	C	A	167.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.175;SOR=0.892;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:176,0,150
chr1	97838887	rs11582179	T	C	307.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.76;SOR=4.407;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:324,24,0
chr1	98039541	rs56293913	A	G	1486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=75;ExcessHet=3.9794;FS=3.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-1.120e-01;SOR=1.068;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,25:75:99:601,0,1362
chr1	98144856	rs3790387	T	C	52.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.524;SOR=0.446;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:61:61,0,105
chr1	98157591	rs2786511	C	T	70.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=2.303;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	98164768	rs6668296	C	T	55.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.645e+00;SOR=0.446;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,93
chr1	98165091	rs2297595	T	C	1049.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127e+00;DB;DP=98;ExcessHet=3.0103;FS=0.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-4.420e-01;SOR=0.570;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,46:98:99:1058,0,1348
chr1	98186229	rs55684412	T	C	141.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=3.258;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr1	98348885	rs1801265	G	A	4158.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DB;DP=73;ExcessHet=3.9794;FS=3.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=2.22;SOR=0.500;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,40:73:99:920,0,817
chr1	98349390	rs111231337	C	CA	1779.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=27.81;SOR=0.886;VQSLOD=4.72;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:98349388_C_A:649,69,0:98349388
chr1	98510315	rs76183049	C	T	128.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.980e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=-6.810e-01;SOR=1.230;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:137,0,305
chr1	98511733	.	G	GCCGCTGCCGCTGCTACCGCTGCCGCTGCTACCGCTGCCGCTGCTA	1196.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e-01;DP=22;ExcessHet=6.9897;FS=6.785;MQ=60.00;MQRankSum=0.00;QD=18.13;ReadPosRankSum=-2.907e+00;SOR=1.519;VQSLOD=3.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:455,0,1617
chr1	99127205	rs12723363	A	G	581.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=1.981;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:126,12,0
chr1	99127392	rs9728148	T	C	4675.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.78;SOR=1.129;VQSLOD=19.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1317,138,0
chr1	99128559	rs34537528	C	G	758.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.18;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	99150635	rs9433747	G	A	9956.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=0.923;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2650,264,0
chr1	99156905	rs187219755	A	T	178.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.88;ReadPosRankSum=1.18;SOR=1.230;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,144
chr1	99164434	rs6577322	G	A	4138.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505e+00;DB;DP=53;ExcessHet=3.9794;FS=1.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=0.535;SOR=0.828;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:533,0,729
chr1	99225627	rs2019213	G	A	8100.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.42;SOR=1.040;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2100,241,0
chr1	99358358	rs984271	G	T	747.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.52;ReadPosRankSum=0.319;SOR=1.981;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:105,0,31
chr1	99358430	rs142554680	G	GA	250.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=6.76;ReadPosRankSum=0.611;SOR=0.273;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,5:20:83:83,0,368
chr1	99358542	rs55842403	C	T	2531.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=106;ExcessHet=3.9794;FS=4.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-6.510e-01;SOR=1.005;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,45:106:99:1073,0,1609
chr1	99387628	rs34854879	T	TA	3978.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.810e+00;DB;DP=41;ExcessHet=3.0103;FS=1.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=-4.450e-01;SOR=0.927;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1179,123,0
chr1	99418647	rs309087	G	C	1882.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=68;ExcessHet=3.9794;FS=2.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=1.49;SOR=0.883;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,32:68:99:883,0,1025
chr1	99418911	rs146451020	T	TTGTG	1347.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e-01;DB;DP=9;ExcessHet=6.9897;FS=6.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=1.10;SOR=0.138;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:99418911_T_TTGTG:253,0,106:99418911
chr1	99418948	rs377156706	T	TGTGTGA	807.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=10;ExcessHet=6.9897;FS=8.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.922;SOR=3.117;VQSLOD=4.02;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,3:10:99:1|0:99418911_T_TTGTG:105,0,254:99418911
chr1	99421985	rs12120274	G	A	98.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:107,0,26
chr1	100111956	rs834997	A	G	729.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=54;ExcessHet=3.0103;FS=1.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-3.005e+00;SOR=0.892;VQSLOD=22.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,26:54:99:738,0,637
chr1	100133438	rs143626158	CT	C	183.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.32;ReadPosRankSum=-1.036e+00;SOR=0.818;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:43:43,0,61
chr1	100133510	rs1416230	C	T	183.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=1.15;SOR=1.179;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:79,0,26
chr1	100152443	rs1338576	T	C	5395.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=95;ExcessHet=1.5490;FS=1.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=-4.320e-01;SOR=0.561;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,54:95:99:1546,0,940
chr1	100182884	rs6696586	C	T	675.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=17;ExcessHet=3.9794;FS=3.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.00;SOR=1.489;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,9:17:99:0|1:100182884_C_T:316,0,238:100182884
chr1	100184963	.	CA	C	331.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DP=12;ExcessHet=6.9897;FS=1.193;MQ=59.78;MQRankSum=0.00;QD=5.93;ReadPosRankSum=-7.940e-01;SOR=0.922;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:12:55:66,0,55
chr1	100185282	rs6679013	G	T	552.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=2.16;SOR=0.752;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:236,0,346
chr1	100194305	rs7522921	C	G	1294.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.528;SOR=0.672;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,25:56:99:680,0,837
chr1	100203501	rs7537095	C	T	669.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.560e-01;DB;DP=20;ExcessHet=1.5490;FS=12.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=-1.930e-01;SOR=4.073;VQSLOD=11.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:264,0,375
chr1	100203571	rs7548709	A	G	1609.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;DB;DP=47;ExcessHet=1.5490;FS=2.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=0.970;SOR=1.098;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:562,0,606
chr1	100203597	rs7513916	G	A	1875.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.850e-01;DB;DP=54;ExcessHet=1.5490;FS=1.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.39;ReadPosRankSum=0.260;SOR=0.955;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:618,0,657
chr1	100203648	rs7537296	C	T	2471.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;DB;DP=65;ExcessHet=1.5490;FS=0.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=-5.910e-01;SOR=0.855;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,32:65:99:868,0,879
chr1	100203693	rs7514021	G	A	2833.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;DB;DP=69;ExcessHet=1.5490;FS=4.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.048;SOR=0.629;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:846,0,947
chr1	100203902	rs10875245	C	T	186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693e+00;DB;DP=10;ExcessHet=3.9794;FS=10.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.89;ReadPosRankSum=0.475;SOR=0.037;VQSLOD=19.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:106,0,233
chr1	100203999	rs6658800	G	A	197.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=3.611;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	100207818	rs41285734	C	G	307.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-5.540e-01;SOR=0.525;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:316,0,553
chr1	100212553	rs1591775	C	T	162.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.42;SOR=1.022;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr1	100213115	rs6577132	T	C	273.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.24;ReadPosRankSum=0.319;SOR=2.833;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:116,0,30
chr1	100214391	rs1416237	T	A	1129.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=1.25;SOR=0.859;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:226,0,166
chr1	100316589	rs2307130	A	G	4692.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=53;ExcessHet=3.0103;FS=1.870;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.79;ReadPosRankSum=-6.410e-01;SOR=0.503;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1868,159,0
chr1	100316765	rs663848	C	T	3677.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=2.765;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1153,84,0
chr1	100318092	.	ATT	A,ATTT	243.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.431;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.12;MQRankSum=0.00;QD=11.06;ReadPosRankSum=0.319;SOR=1.255;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,2,3:6:30:76,30,103,42,0,66
chr1	100329889	rs535461	G	C	10550.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.48;SOR=2.599;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2875,261,0
chr1	100330237	rs538389	A	G	1561.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=5.994;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:249,18,0
chr1	100330295	rs539157	T	C	525.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.43;SOR=5.549;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:110,9,0
chr1	100335883	rs903126	A	G	2942.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.971e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=-8.670e-01;SOR=0.681;VQSLOD=6.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1144,107,0
chr1	100336361	rs2230306	C	T	5250.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.35;SOR=0.935;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1213,126,0
chr1	100340225	rs634880	G	A	7101.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=1.250;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1817,180,0
chr1	100342227	rs3736295	C	T	3841.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.300e-02;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.46;ReadPosRankSum=0.248;SOR=0.638;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1593,141,0
chr1	100343073	rs2291637	T	A	667.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.09;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.70;ReadPosRankSum=-1.402e+00;SOR=1.609;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:251,18,0
chr1	100343153	rs2291638	A	G	1852.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.839e+00;DB;DP=38;ExcessHet=1.5490;FS=1.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.16;ReadPosRankSum=-3.360e-01;SOR=1.017;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:478,0,529
chr1	100345409	rs2392077	C	G	2049.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.69;DB;DP=20;ExcessHet=3.0103;FS=6.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=1.01;SOR=2.129;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:806,60,0
chr1	100346741	rs3736296	T	C	7993.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.723;DB;DP=85;ExcessHet=3.0103;FS=1.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=-4.180e-01;SOR=0.540;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2822,254,0
chr1	100350383	rs2234707	G	A	1739.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.205e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=-1.271e+00;SOR=0.576;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:545,45,0
chr1	100353675	rs555929	G	A	12154.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.57;SOR=1.006;VQSLOD=3.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3269,327,0
chr1	100357041	rs2035960	A	G	1303.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.77;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.80;ReadPosRankSum=2.82;SOR=0.616;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:421,30,0
chr1	100357141	rs2035961	T	A	3325.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.185e+00;DB;DP=28;ExcessHet=3.0103;FS=1.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=0.233;SOR=0.478;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:909,84,0
chr1	100358200	rs594249	G	A	3770.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.57;SOR=4.429;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1195,93,0
chr1	100366446	rs35956186	GTT	G	4942.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=61;ExcessHet=3.0103;FS=1.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.78;ReadPosRankSum=-9.470e-01;SOR=0.566;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,35:61:99:1033,0,679
chr1	100376448	rs2274570	G	A	3651.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.832e+00;DB;DP=31;ExcessHet=3.0103;FS=3.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.16;ReadPosRankSum=-1.136e+00;SOR=0.334;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:100376448_G_A:1360,93,0:100376448
chr1	100376456	rs1541041	T	A	3660.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.521e+00;DB;DP=31;ExcessHet=3.0103;FS=4.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.24;ReadPosRankSum=-1.776e+00;SOR=0.253;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:100376448_G_A:1390,93,0:100376448
chr1	100381109	rs112476688	A	AT	662.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.920e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.38;ReadPosRankSum=-1.465e+00;SOR=0.527;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:20:165,20,0
chr1	100381869	rs2296885	G	A	1357.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.95;ReadPosRankSum=1.11;SOR=3.109;VQSLOD=19.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:464,36,0
chr1	100533960	rs6687189	G	A	2223.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.07;SOR=2.833;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:990,90,0
chr1	100547994	rs5876	T	C	100.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.43;SOR=2.833;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
chr1	100568759	rs544225	C	G	836.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.17;SOR=6.184;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:176,15,0
chr1	100575933	rs13375867	G	A	8745.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=1.143;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3727,386,0
chr1	100598866	rs472498	G	A	12896.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=1.833;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,141:141:99:1|1:100598866_G_A:6198,424,0:100598866
chr1	100598867	rs687513	C	T	12896.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=1.883;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,137:137:99:1|1:100598866_G_A:6198,424,0:100598866
chr1	100609556	rs12725758	T	C	482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028e+00;DB;DP=40;ExcessHet=3.0103;FS=1.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-1.138e+00;SOR=1.085;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:491,0,565
chr1	100617887	rs2784177	C	T	2948.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.027e+00;DB;DP=28;ExcessHet=3.0103;FS=2.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=0.736;SOR=0.377;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:940,84,0
chr1	100662090	rs10569170	CTG	C	1060.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=6.439;VQSLOD=7.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr1	100671628	.	TA	T	391.29	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.640e-01;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=1.24;SOR=0.760;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:125,18,0
chr1	100671866	rs34229137	T	A	3090.23	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=64;ExcessHet=0.4576;FS=8.276;MQ=59.93;MQRankSum=0.00;QD=25.33;ReadPosRankSum=1.63;SOR=0.468;VQSLOD=4.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1937,148,0
chr1	100672060	rs12021720	T	C	5953.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=0.736;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2583,252,0
chr1	100680593	rs11431894	C	CT	420.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DB;DP=11;ExcessHet=3.9794;FS=7.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-9.620e-01;SOR=0.079;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,5:11:46:122,0,46
chr1	100684488	rs55792733	TGG	T	101.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=33.86;SOR=1.179;VQSLOD=4.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr1	100696185	rs11394110	G	GA	300.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=59.23;MQRankSum=-1.400e-01;QD=23.14;ReadPosRankSum=0.282;SOR=3.767;VQSLOD=4.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:15:131,15,0
chr1	100715454	rs3806235	G	A	4998.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=2.167;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2397,222,0
chr1	100731819	rs57195277	C	CA	880.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.21;SOR=6.091;VQSLOD=6.61;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:100731819_C_CA:270,18,0:100731819
chr1	100731820	rs57327535	G	A	880.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=35.23;SOR=6.091;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:100731819_C_CA:270,18,0:100731819
chr1	100733207	rs60634058	G	GT,GTT	3790.75	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.984;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=-6.780e-01;SOR=0.768;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,35,7:46:33:930,73,33,672,0,772
chr1	100733552	rs4298755	T	C	1539.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.75;SOR=5.186;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:725,57,0
chr1	100735903	rs4579779	A	G	426.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.59;SOR=4.804;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr1	100740694	rs3131833	G	A	199.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=3.611;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	100742670	rs4495726	A	G	1652.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.75;SOR=6.229;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:783,63,0
chr1	100743078	rs4433415	A	G	779.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.98;SOR=6.091;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:241,18,0
chr1	100750733	rs58046505	AGTTTT	A	9477.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.56;SOR=1.878;VQSLOD=5.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4971,341,0
chr1	100751055	rs10875286	G	C	1618.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=7.328;VQSLOD=23.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:604,42,0
chr1	100817165	rs145034044	CCT	C	97.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,104
chr1	100817384	rs28361189	A	G	920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=97;ExcessHet=3.0103;FS=3.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=0.756;SOR=1.075;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,41:97:99:929,0,1208
chr1	100817559	.	T	TGCGCGC	118.71	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.29;SOR=2.833;VQSLOD=4.19;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr1	100818464	rs594529	T	C	3555.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.570e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.52;ReadPosRankSum=0.408;SOR=0.790;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:501,0,670
chr1	100819273	rs2297170	T	C	3834.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DB;DP=148;ExcessHet=3.9794;FS=2.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=1.13;SOR=0.659;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,78:148:99:1986,0,1761
chr1	100856479	rs28361213	C	T	818.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.947;SOR=0.776;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,33:67:99:827,0,864
chr1	100933388	rs560431	T	C	454.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.484;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.40;ReadPosRankSum=1.20;SOR=2.049;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	100961419	rs2270692	A	G	987.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.593;DB;DP=4;ExcessHet=3.0103;FS=4.032;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.86;ReadPosRankSum=0.516;SOR=2.621;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr1	100961779	rs149672640	ATT	A	1062.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=11;ExcessHet=3.0103;FS=3.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=1.27;SOR=2.208;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,10:11:8:336,8,0
chr1	100963418	rs904296	T	G	1037.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.632;DB;DP=19;ExcessHet=3.0103;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.31;ReadPosRankSum=1.44;SOR=1.493;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:629,57,0
chr1	100970346	rs10875295	T	C	3149.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=73;ExcessHet=1.5490;FS=0.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=-3.970e-01;SOR=0.830;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,37:73:99:1011,0,873
chr1	100983623	rs3767839	G	A	1165.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.03;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.51;ReadPosRankSum=0.272;SOR=2.774;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:407,30,0
chr1	100984092	rs10783134	T	C	593.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.368e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.24;ReadPosRankSum=0.842;SOR=2.419;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr1	101189027	rs1476408	C	G	2159.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.41;SOR=3.952;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:670,54,0
chr1	101194965	rs68164684	G	GT	1659.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DB;DP=30;ExcessHet=1.5490;FS=1.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=0.785;SOR=0.465;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,16:30:99:318,0,299
chr1	101199979	rs3176875	A	G	1402.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.25;SOR=6.994;VQSLOD=24.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:382,27,0
chr1	101203827	rs3176879	G	A	9923.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=1.045;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2836,270,0
chr1	101340134	rs12039319	C	T	662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-2.310e-01;SOR=0.606;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:172,0,152
chr1	101342497	rs2295280	T	C	1425.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.86;DB;DP=12;ExcessHet=3.0103;FS=2.357;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.00;ReadPosRankSum=-5.340e-01;SOR=2.015;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:443,36,0
chr1	101361579	.	G	T	31.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.42;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:40,0,29
chr1	101362371	rs1074739	C	A	361.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=1.10;SOR=0.277;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:47:47,0,340
chr1	101372607	rs4908106	C	A	1680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.41;SOR=6.091;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:486,36,0
chr1	101377845	rs10493940	A	G	898.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.640e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=1.19;SOR=0.892;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:329,0,508
chr1	101387506	.	CTT	C,CT	207.03	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.169e+00;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.86;ReadPosRankSum=0.674;SOR=2.030;VQSLOD=5.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,1:6:9:92,9,31,48,0,42
chr1	101475901	rs7521424	T	C	748.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084e+00;DB;DP=15;ExcessHet=6.9897;FS=3.070;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-8.890e-01;SOR=2.165;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:146,0,366
chr1	101476786	rs34915449	G	A	1032.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.530e-01;DB;DP=42;ExcessHet=6.9897;FS=0.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=-3.380e-01;SOR=0.811;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,12:42:99:284,0,780
chr1	101476800	rs35409691	CA	C	1056.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=43;ExcessHet=6.9897;FS=1.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.89;ReadPosRankSum=-6.500e-01;SOR=0.848;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,12:43:99:263,0,881
chr1	101476814	rs17123612	C	T	1146.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=46;ExcessHet=6.9897;FS=1.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=-2.880e-01;SOR=0.842;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,12:46:99:287,0,860
chr1	101487373	.	A	AACAC	642.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DP=13;ExcessHet=3.9794;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-8.550e-01;SOR=0.169;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:185,0,293
chr1	101491108	rs7521668	C	A	818.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500e-01;DB;DP=30;ExcessHet=3.9794;FS=1.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.76;SOR=1.111;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:585,0,325
chr1	101704532	rs3737577	G	T	3738.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.453e+00;DB;DP=76;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=-5.130e-01;SOR=0.717;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2587,228,0
chr1	102251767	.	CTTT	C	179.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.98;ReadPosRankSum=-9.670e-01;SOR=0.836;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,82
chr1	102252790	rs12129772	C	T	1368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004e+00;DB;DP=39;ExcessHet=3.9794;FS=2.601;MQ=59.28;MQRankSum=-6.790e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-2.380e-01;SOR=1.253;VQSLOD=-4.033e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,18:39:99:635,0,675
chr1	102271774	rs4907955	G	A	4818.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-02;DB;DP=113;ExcessHet=1.5490;FS=0.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=1.32;SOR=0.633;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,43:113:99:932,0,1705
chr1	102296144	rs10493974	T	G	681.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.720e-01;DB;DP=42;ExcessHet=3.0103;FS=5.032;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=-1.786e+00;SOR=0.226;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,27:42:99:690,0,357
chr1	102296279	rs10493973	T	C	1346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251e+00;DB;DP=99;ExcessHet=3.0103;FS=2.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-1.130e-01;SOR=0.652;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,57:99:99:1355,0,1104
chr1	102462446	rs11276972	GTCAGT	G	5243.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=1.437;VQSLOD=5.93;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,75:75:99:3360,226,0
chr1	103347416	rs12140745	A	G	469.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.900e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.978;SOR=1.112;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:248,0,334
chr1	103354115	rs17127203	T	C	267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=0.293;SOR=0.693;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:276,0,440
chr1	103354138	rs1676486	A	G	3048.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=33;ExcessHet=3.0103;FS=2.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=-4.560e-01;SOR=1.014;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:426,0,312
chr1	103354428	rs1763347	A	G	3378.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=57;ExcessHet=3.9794;FS=8.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=1.21;SOR=0.970;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,22:57:99:451,0,960
chr1	103354939	rs113226085	C	CTGTGTGTGTGTGTG	1847.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=30;ExcessHet=3.0103;FS=8.210;MQ=60.00;MQRankSum=0.00;QD=28.86;ReadPosRankSum=0.063;SOR=1.940;VQSLOD=4.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,10:30:99:436,0,1213
chr1	103356107	rs11164634	A	G	217.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=-1.732e+00;SOR=0.368;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:54:226,0,54
chr1	103377968	rs11164636	A	C	78.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.11;SOR=2.303;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr1	103379004	rs80104501	A	C	246.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=0.135;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:93:167,0,93
chr1	103379420	rs12135438	C	T	411.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=-1.260e-01;SOR=0.859;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:163,0,159
chr1	103379870	rs28648038	A	C	775.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=33;ExcessHet=3.9794;FS=0.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=2.27;SOR=0.807;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:344,0,338
chr1	103380128	rs12121498	G	A	519.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DB;DP=16;ExcessHet=3.9794;FS=1.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.707;SOR=1.139;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:291,0,149
chr1	103380379	rs34228277	T	TA,TAA	636.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.917;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.73;ReadPosRankSum=-1.042e+00;SOR=0.473;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,8:15:99:414,258,256,114,0,216
chr1	103380393	.	G	A	279.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455e+00;DP=16;ExcessHet=3.0103;FS=3.233;MQ=60.00;MQRankSum=0.00;QD=17.47;ReadPosRankSum=-1.197e+00;SOR=0.105;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:288,0,240
chr1	103380472	rs116009678	T	A	72.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.47;SOR=1.609;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:103380472_T_A:86,6,0:103380472
chr1	103380486	rs111980222	G	A	73.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=1.609;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:6:1|1:103380472_T_A:86,6,0:103380472
chr1	103381129	rs4908273	C	T	441.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.206e+00;DB;DP=42;ExcessHet=3.0103;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-3.040e-01;SOR=0.332;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:450,0,637
chr1	103381296	rs12120961	T	C	1089.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=2.32;SOR=0.660;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,23:29:99:725,0,119
chr1	103385653	rs11801437	G	A	447.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.33;ReadPosRankSum=0.272;SOR=1.230;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:136,0,156
chr1	103388990	rs147848946	TA	T	476.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.35;ReadPosRankSum=-1.260e-01;SOR=0.743;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,10:27:99:205,0,404
chr1	103399906	rs11164640	G	A	485.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=1.07;SOR=1.058;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:56:222,0,56
chr1	103400399	rs2045818	C	T	461.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.550e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=1.11;SOR=1.148;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	103400491	rs11164641	G	A	1985.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.430e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.18;ReadPosRankSum=-1.659e+00;SOR=1.127;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:103400491_G_A:675,45,0:103400491
chr1	103400492	rs11164642	A	T	1985.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.154e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.84;ReadPosRankSum=-1.225e+00;SOR=0.990;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:103400491_G_A:675,45,0:103400491
chr1	103404384	rs2126643	T	C	139.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.967;SOR=1.329;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:74,0,31
chr1	103405892	rs17127270	G	A	2767.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=86;ExcessHet=3.9794;FS=0.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=1.12;SOR=0.773;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,53:86:99:1229,0,648
chr1	103412178	rs182456022	C	T	67.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.524;SOR=0.223;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:76,0,69
chr1	103427381	rs1012282	A	G	1761.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181e+00;DB;DP=81;ExcessHet=3.9794;FS=1.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-7.520e-01;SOR=0.572;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,42:81:99:912,0,932
chr1	103427407	rs1012281	T	C	1678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.018;DB;DP=75;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-8.590e-01;SOR=0.638;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,39:75:99:973,0,944
chr1	103428389	rs1841834	G	A	3982.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=3.196;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1204,96,0
chr1	103435626	rs2061710	G	A	877.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.31;SOR=3.014;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:136,15,0
chr1	103444497	rs1903787	A	G	919.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900e-02;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.471;SOR=0.717;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,19:45:99:472,0,766
chr1	103444679	rs11164649	T	G	1611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=42;ExcessHet=6.9897;FS=2.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.226;SOR=0.969;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:582,0,421
chr1	103445223	rs2622846	G	A	1827.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=65;ExcessHet=3.9794;FS=1.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=2.46;SOR=0.865;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,25:65:99:568,0,1033
chr1	103449598	rs2615978	G	C	1804.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.38;SOR=3.657;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:387,33,0
chr1	103453379	rs2622858	G	C	607.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=0.062;SOR=0.544;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:261,0,199
chr1	103455217	rs1463034	C	T	2901.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=1.81;SOR=0.696;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:940,84,0
chr1	103461508	rs2622867	T	A	3921.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=1.281;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:941,93,0
chr1	103463768	rs181735480	T	G	182.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=10;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=-7.120e-01;SOR=2.303;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:191,0,113
chr1	103463976	rs2622870	G	T	748.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=4;ExcessHet=3.0103;FS=2.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=0.793;SOR=0.337;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:127,12,0
chr1	103467615	rs2929162	C	T	2497.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=3.737;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:47:512,47,0
chr1	103468609	rs2251895	A	G	4366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=1.441;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1115,108,0
chr1	103468855	.	TAA	T	359.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DP=30;ExcessHet=3.0103;FS=1.527;MQ=60.00;MQRankSum=0.00;QD=11.98;ReadPosRankSum=-4.030e-01;SOR=1.034;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,12:30:99:368,0,572
chr1	103471456	rs112482103	CCAT	C	7477.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.78;SOR=1.083;VQSLOD=4.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,55:57:99:2416,166,0
chr1	103483514	rs945748	C	T	2380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=35;ExcessHet=6.9897;FS=4.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-2.640e-01;SOR=1.144;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:547,0,513
chr1	103487394	rs35291481	CT	C	2498.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=-2.170e-01;SOR=3.958;VQSLOD=4.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:78:727,78,0
chr1	103496620	rs7523441	G	T	3519.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=1.655;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:887,84,0
chr1	103496805	rs36076089	GA	G	879.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.270e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=-1.230e-01;SOR=0.995;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:379,45,0
chr1	103548319	rs11164662	C	G	1159.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=18;ExcessHet=6.9897;FS=9.617;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-1.180e-01;SOR=2.160;VQSLOD=2.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,13:18:99:438,0,110
chr1	103548497	rs11164663	A	C	2055.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=109;ExcessHet=3.9794;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=1.09;SOR=0.593;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,44:109:99:852,0,1438
chr1	103573517	.	CT	C	387.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-01;DP=35;ExcessHet=6.9897;FS=6.688;MQ=60.00;MQRankSum=0.00;QD=3.43;ReadPosRankSum=0.364;SOR=0.278;VQSLOD=4.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,5:35:43:43,0,586
chr1	103573547	rs6691654	G	A	3958.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.116;DB;DP=47;ExcessHet=3.0103;FS=2.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=-9.450e-01;SOR=1.129;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1289,138,0
chr1	104076462	rs6697444	C	T	3562.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-02;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=-9.280e-01;SOR=0.635;VQSLOD=6.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,19:39:99:486,0,507
chr1	104076495	rs6702220	A	G	3687.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110e-01;DB;DP=45;ExcessHet=3.0103;FS=1.866;MQ=59.99;MQRankSum=1.02;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=-1.148e+00;SOR=0.946;VQSLOD=1.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,22:45:99:573,0,622
chr1	104076537	rs6702324	A	T	3293.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=39;ExcessHet=3.0103;FS=6.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=0.987;SOR=1.538;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:476,0,540
chr1	104077271	rs36141069	G	GT	686.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810e-01;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=59.78;MQRankSum=0.00;QD=3.84;ReadPosRankSum=1.47;SOR=0.684;VQSLOD=5.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,9:58:59:59,0,986
chr1	104077600	rs144360407	A	G	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.637;SOR=0.712;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:351,0,628
chr1	104078989	rs10881214	G	A	447.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.65;ReadPosRankSum=1.15;SOR=3.611;VQSLOD=16.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:113,0,31
chr1	104080169	rs10736038	G	C	3060.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e-01;DB;DP=41;ExcessHet=3.0103;FS=0.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=0.397;SOR=0.856;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:454,0,694
chr1	104084226	rs10881232	A	G	5524.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=1.42;SOR=0.763;VQSLOD=6.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,27:47:99:798,0,534
chr1	104086145	rs10785725	A	G	8381.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.16;SOR=1.672;VQSLOD=5.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2752,276,0
chr1	104089773	rs7529928	C	G	2019.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=0.075;SOR=0.965;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:447,0,272
chr1	104116565	rs79005152	A	T	1011.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=56.75;MQRankSum=-2.690e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.577;SOR=0.780;VQSLOD=-9.742e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1020,0,859
chr1	107600869	rs3791185	G	A	174.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=0.319;SOR=0.330;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:73,0,71
chr1	107867717	rs1132933	A	C	77.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=2.303;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	107946262	rs12126267	G	A	1988.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616e+00;DB;DP=27;ExcessHet=3.9794;FS=1.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=1.02;SOR=0.990;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:509,0,384
chr1	107946324	rs71897263	CA	C	845.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=54;ExcessHet=3.9794;FS=1.299;MQ=59.92;MQRankSum=0.00;QD=8.46;ReadPosRankSum=1.23;SOR=0.817;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,22:54:99:401,0,543
chr1	107979396	rs480392	A	C	6371.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=1.714;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1719,159,0
chr1	107979566	rs56311800	AT	A	275.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.59;ReadPosRankSum=-9.670e-01;SOR=3.056;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:28:66,0,28
chr1	108002764	rs488747	C	A	894.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.38;SOR=6.358;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:244,21,0
chr1	108002843	rs80056997	G	A	189.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=16;ExcessHet=3.0103;FS=6.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=1.09;SOR=3.258;VQSLOD=15.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:198,0,254
chr1	108139003	rs3748702	C	T	1341.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DB;DP=47;ExcessHet=3.9794;FS=7.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-1.260e-01;SOR=1.713;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:844,0,535
chr1	108144828	rs1571343	C	T	144.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.76;SOR=3.258;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	108152231	rs1328209	G	T	601.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190e+00;DB;DP=8;ExcessHet=6.9897;FS=3.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=0.00;SOR=2.030;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:139,0,141
chr1	108152332	rs1328208	T	A	2148.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=31;ExcessHet=6.9897;FS=0.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=-3.600e-02;SOR=0.609;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:372,0,554
chr1	108152630	rs2296877	G	T	307.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=13;ExcessHet=3.0103;FS=5.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-1.860e+00;SOR=3.258;VQSLOD=17.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:78:316,0,78
chr1	108160260	rs5776894	GA	G	2815.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DB;DP=71;ExcessHet=6.9897;FS=6.064;MQ=60.00;MQRankSum=0.00;QD=11.78;ReadPosRankSum=0.106;SOR=0.701;VQSLOD=5.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,44:71:99:1012,0,477
chr1	108225778	rs2504457	G	C	379.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=-3.190e-01;SOR=2.147;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	108247048	rs2494070	A	G	876.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.62;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=1.44;SOR=0.578;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:644,48,0
chr1	108292260	rs6672483	A	G	4331.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=79;ExcessHet=1.5490;FS=0.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=-8.400e-02;SOR=0.833;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1261,0,958
chr1	108299674	rs12049477	C	A	222.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-2.744e+00;SOR=1.270;VQSLOD=22.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:231,0,124
chr1	108300141	rs11808011	T	C	667.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.36;SOR=5.892;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:684,54,0
chr1	108303686	rs7417283	C	T	829.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=4.804;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr1	108307642	rs7514025	C	T	1871.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.02;SOR=3.300;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:336,30,0
chr1	108307727	rs7528153	T	A	2819.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.464;DB;DP=41;ExcessHet=3.0103;FS=0.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=0.079;SOR=0.594;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1277,123,0
chr1	108313258	rs6583048	C	T	7644.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=0.709;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1419,126,0
chr1	108315305	rs4611048	C	T	4826.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.75;SOR=2.387;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1188,108,0
chr1	108440084	rs11185203	A	G	137.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=-8.420e-01;SOR=0.368;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:145,0,67
chr1	108507541	rs71796067	GGCC	G	3287.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=18;ExcessHet=3.0103;FS=2.824;MQ=60.00;MQRankSum=0.00;QD=32.25;ReadPosRankSum=0.845;SOR=1.981;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:396,0,323
chr1	108507636	rs345269	G	A	379.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=0.00;SOR=0.784;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:138,0,27
chr1	108679532	rs17513812	C	T	260.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-2.681e+00;SOR=1.071;VQSLOD=22.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:269,0,474
chr1	108681600	rs34563977	T	C	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e+00;DB;DP=48;ExcessHet=3.0103;FS=7.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.84;ReadPosRankSum=-1.748e+00;SOR=0.643;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,14:48:99:241,0,954
chr1	108700316	rs829002	G	C	1414.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=1.87;SOR=0.645;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:452,0,470
chr1	108703834	rs11185293	C	T	2140.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=103;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.906;SOR=0.671;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,42:103:99:1009,0,1467
chr1	108724518	rs490680	A	G	5202.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.907;SOR=0.690;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,34:65:99:927,0,718
chr1	108724693	rs491785	G	A	1608.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.54;ReadPosRankSum=-8.440e-01;SOR=0.892;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:371,0,123
chr1	108728347	rs694667	T	C	924.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=28;ExcessHet=3.9794;FS=1.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.138;SOR=0.351;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:473,0,400
chr1	108728484	rs862493	T	C	2167.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;DB;DP=88;ExcessHet=3.9794;FS=1.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=0.792;SOR=0.644;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,39:88:99:925,0,1179
chr1	108734993	rs521545	G	C	317.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.98;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=-4.240e-01;SOR=0.602;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr1	108735388	rs524504	T	A	355.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.328;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=2.19;SOR=1.765;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:268,21,0
chr1	108742892	rs554709	T	G	708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870e-01;DB;DP=20;ExcessHet=3.9794;FS=3.112;MQ=60.00;MQRankSum=0.00;QD=16.47;ReadPosRankSum=0.441;SOR=1.758;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:216,0,407
chr1	108742904	rs150513527	CGCGCAGG	C	405.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.20;ReadPosRankSum=1.34;SOR=0.495;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,2:10:56:56,0,329
chr1	108766133	rs3870737	A	G	535.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=8;ExcessHet=3.9794;FS=2.125;MQ=41.43;MQRankSum=0.521;QD=14.08;ReadPosRankSum=-4.200e-02;SOR=1.436;VQSLOD=-4.653e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:57:186,0,57
chr1	108766424	rs3879436	A	G	1352.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=56.64;MQRankSum=-1.800e-01;NEGATIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.562;SOR=0.693;VQSLOD=-2.237e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:607,0,510
chr1	109009978	.	G	GC	703.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090e-01;DP=60;ExcessHet=3.9794;FS=0.000;MQ=31.81;MQRankSum=0.620;QD=4.95;ReadPosRankSum=0.684;SOR=0.267;VQSLOD=0.180;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,12:60:99:260,0,1617
chr1	109013458	rs2992768	C	T	1124.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=41.50;MQRankSum=-1.981e+00;POSITIVE_TRAIN_SITE;QD=29.60;ReadPosRankSum=-1.532e+00;SOR=3.145;VQSLOD=-3.271e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:147,0,224
chr1	109142993	rs4970790	A	T	459.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.23;SOR=4.977;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr1	109158746	.	CTT	C	304.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=6;ExcessHet=1.5490;FS=0.000;MQ=59.47;MQRankSum=-2.100e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=-1.383e+00;SOR=4.047;VQSLOD=0.311;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:13:143,0,13
chr1	109170746	rs2133198	C	T	4223.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.517;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.26;ReadPosRankSum=1.34;SOR=1.022;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1694,144,0
chr1	109241669	rs2297563	G	A	116.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-6.160e-01;SOR=0.412;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:125,0,237
chr1	109255513	rs3006864	G	T	5870.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.26;SOR=1.399;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2237,219,0
chr1	109260181	rs914806	A	G	375.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=1.15;SOR=1.981;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr1	109260357	rs4970804	G	A	3397.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-02;DB;DP=67;ExcessHet=1.5490;FS=0.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=1.64;SOR=0.831;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,29:67:99:662,0,981
chr1	109261321	rs142736840	T	TA	179.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=-7.900e-02;SOR=1.863;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:188,0,188
chr1	109265029	rs4423040	G	T	3120.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=85;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=0.718;SOR=0.652;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,40:85:99:1041,0,1127
chr1	109265326	rs4970743	G	C	1101.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.101e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=-1.575e+00;SOR=0.551;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:174,0,323
chr1	109268441	rs11582005	G	A	2568.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=99;ExcessHet=3.9794;FS=12.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-9.000e-01;SOR=1.015;VQSLOD=16.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,54:99:99:1387,0,1106
chr1	109268573	rs4494160	T	C	7855.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.87;DB;DP=70;ExcessHet=3.0103;FS=1.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=0.204;SOR=0.808;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2379,209,0
chr1	109270402	rs10494096	G	A	6011.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.03;SOR=1.961;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2731,255,0
chr1	109273456	rs4970809	A	G	3052.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.560e-01;DB;DP=69;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.232;SOR=0.714;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,33:69:99:869,0,1045
chr1	109273610	rs4970810	G	A	1291.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391e+00;DB;DP=18;ExcessHet=6.9897;FS=2.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-1.839e+00;SOR=1.166;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,13:18:99:378,0,154
chr1	109275557	.	AT	A	164.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=10;ExcessHet=6.9897;FS=0.000;MQ=58.87;MQRankSum=0.00;QD=6.87;ReadPosRankSum=0.00;SOR=0.257;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:33:97,0,33
chr1	109289236	rs1124426	C	A	649.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.21;ReadPosRankSum=0.253;SOR=1.264;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:109,0,112
chr1	109289353	rs1124427	C	G	3425.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=43;ExcessHet=3.9794;FS=0.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=1.20;SOR=0.916;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,26:43:99:712,0,388
chr1	109289487	rs6604120	C	T	5918.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=86;ExcessHet=3.9794;FS=10.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=2.22;SOR=1.212;VQSLOD=19.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1267,0,972
chr1	109289732	rs142217554	G	GCCGCGCTCCCCACTCTTCTCCGCTCCCGT	484.65	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.26;ReadPosRankSum=0.140;SOR=0.602;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:10:176,10,0
chr1	109289804	rs7553437	T	C	203.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=1.609;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr1	109299453	rs1277044	C	G	2453.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=32;ExcessHet=3.9794;FS=1.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=-3.120e-01;SOR=0.980;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,20:32:99:523,0,381
chr1	109301019	rs3841723	GC	G	404.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=0.529;SOR=0.859;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:28:66,0,28
chr1	109301250	rs1277042	G	C	4012.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DB;DP=67;ExcessHet=3.9794;FS=3.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-5.300e-01;SOR=0.501;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,33:67:99:783,0,868
chr1	109315211	rs1623641	A	G	428.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-1.645e+00;SOR=0.892;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:107,0,63
chr1	109321824	rs1759481	G	T	3937.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.621e+00;DB;DP=49;ExcessHet=3.9794;FS=10.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=0.518;SOR=0.146;VQSLOD=18.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,29:49:99:854,0,641
chr1	109325436	rs1298092	T	C	430.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=1.65;SOR=2.448;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,105
chr1	109336411	rs1277016	G	A	1132.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.37;ReadPosRankSum=0.709;SOR=2.964;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:370,27,0
chr1	109337572	rs1149158	A	C	1481.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=53;ExcessHet=3.9794;FS=0.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-2.860e-01;SOR=0.829;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:642,0,700
chr1	109338861	rs1127635	G	C	1049.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.170e-01;DB;DP=51;ExcessHet=3.9794;FS=0.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.654;SOR=0.782;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,17:51:99:326,0,887
chr1	109339414	rs35138668	GT	G	303.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.45;ReadPosRankSum=-7.520e-01;SOR=0.760;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:125,0,172
chr1	109342716	rs1277239	A	G	715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=23;ExcessHet=3.9794;FS=6.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.616;SOR=1.681;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:267,0,358
chr1	109349879	rs201346701	CAAAAAAAAAAAAA	C	318.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e-02;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.27;MQRankSum=0.615;QD=17.68;ReadPosRankSum=0.00;SOR=0.914;VQSLOD=0.681;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:226,0,784
chr1	109350198	rs375887364	GT	G	529.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700e-01;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=59.86;MQRankSum=0.00;QD=4.38;ReadPosRankSum=-6.040e-01;SOR=0.777;VQSLOD=5.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,13:40:99:169,0,444
chr1	109351501	rs1149154	A	G	1352.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.248e+00;DB;DP=41;ExcessHet=3.9794;FS=1.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.606;SOR=0.484;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:526,0,568
chr1	109358755	rs11453763	A	AT	3211.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=98;ExcessHet=3.9794;FS=2.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.682;SOR=0.843;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,55:98:99:1376,0,1020
chr1	109363075	rs1333128	T	C	1725.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-02;DB;DP=77;ExcessHet=3.9794;FS=4.077;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=1.84;SOR=1.095;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,41:77:99:967,0,854
chr1	109363140	rs1333129	T	C	1848.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DB;DP=96;ExcessHet=3.9794;FS=4.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-4.610e-01;SOR=0.682;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,42:96:99:939,0,1228
chr1	109363232	rs1333130	T	C	1627.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=55;ExcessHet=3.9794;FS=3.876;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=2.93;SOR=0.374;VQSLOD=22.55;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,25:55:99:656,0,736
chr1	109366286	rs7522157	C	T	2994.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.326e+00;DB;DP=119;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.695;SOR=0.708;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,56:119:99:1256,0,1700
chr1	109366370	rs7522260	C	T	3080.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DB;DP=53;ExcessHet=6.9897;FS=6.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-5.270e-01;SOR=0.418;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:580,0,832
chr1	109372728	rs1277223	A	T	72.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=-3.190e-01;SOR=0.446;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:80,0,30
chr1	109372876	rs1277222	G	A	519.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=11;ExcessHet=3.9794;FS=1.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=-6.260e-01;SOR=0.330;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:99:196,0,100
chr1	109372968	rs1277221	T	G	1830.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.535e+00;DB;DP=48;ExcessHet=3.9794;FS=1.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-7.220e-01;SOR=0.527;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,28:48:99:771,0,612
chr1	109373446	rs1277220	G	A	946.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=-7.800e-02;SOR=1.236;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:133,0,145
chr1	109377157	rs5776950	TA	T	1749.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=-3.620e-01;SOR=1.329;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1062,123,0
chr1	109391486	rs1149142	G	A	8640.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=0.902;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2735,269,0
chr1	109395105	rs1277207	C	T	8701.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DB;DP=109;ExcessHet=3.9794;FS=1.197;MQ=59.97;MQRankSum=1.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.679;SOR=0.576;VQSLOD=2.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,55:109:99:1447,0,1411
chr1	109428249	rs10857987	G	A	2464.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300e-02;DB;DP=50;ExcessHet=6.9897;FS=1.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.915;SOR=0.549;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,30:50:99:782,0,484
chr1	109428344	rs150095508	G	GT	116.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=2.45;SOR=0.693;VQSLOD=6.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:125,0,126
chr1	109446045	rs338491	C	G	377.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=0.992;SOR=2.147;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:184,0,108
chr1	109456850	rs1664419	G	A	825.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=1.04;SOR=0.735;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:381,0,178
chr1	109465165	rs35029887	ACTT	A	4612.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=59;ExcessHet=6.9897;FS=2.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=-7.090e-01;SOR=0.870;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,30:59:99:1138,0,1365
chr1	109466858	rs705268	G	A	2333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=80;ExcessHet=3.9794;FS=9.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.034;SOR=0.291;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,39:80:99:925,0,1123
chr1	109474221	rs1769740	C	T	2551.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900e+00;DB;DP=41;ExcessHet=6.9897;FS=3.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-1.420e-01;SOR=0.447;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:738,0,435
chr1	109474250	rs66470959	T	TAA	679.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730e-01;DB;DP=13;ExcessHet=6.9897;FS=1.382;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-8.300e-01;SOR=0.415;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:13:99:174,0,122
chr1	109477653	rs839850	G	A	3202.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=70;ExcessHet=6.9897;FS=0.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-9.010e-01;SOR=0.740;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,25:70:99:649,0,1197
chr1	109479978	rs168107	G	T	5008.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=161;ExcessHet=6.9897;FS=1.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.905;SOR=0.798;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,70:161:99:1673,0,2406
chr1	109486196	rs338466	A	G	7965.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.434e+00;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=-6.180e-01;SOR=0.737;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,52:101:99:1039,0,1135
chr1	109486240	rs3215062	TA	T	7507.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=88;ExcessHet=3.0103;FS=0.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=1.15;SOR=0.791;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,41:88:99:1148,0,1300
chr1	109486818	rs10776774	A	G	520.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=16.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.62;ReadPosRankSum=1.28;SOR=3.750;VQSLOD=11.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,110
chr1	109490457	rs839543	T	C	4468.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=47;ExcessHet=3.0103;FS=7.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.46;ReadPosRankSum=-3.250e-01;SOR=1.596;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,28:47:99:768,0,434
chr1	109514347	rs536912	C	A	299.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=-5.240e-01;SOR=1.802;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:112,0,29
chr1	109517459	rs12126469	T	C	148.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=0.328;SOR=0.941;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:98:157,0,98
chr1	109529322	rs61696019	T	TAA	3679.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=2.448;VQSLOD=5.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:990,66,0
chr1	109534940	rs337296	G	A	4122.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=47.68;QD=32.98;SOR=1.517;VQSLOD=-2.500e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:997,96,0
chr1	109545046	rs184606	C	T	2593.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=3.551;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:631,51,0
chr1	109556320	.	C	T	173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DP=23;ExcessHet=3.0103;FS=2.066;MQ=60.00;MQRankSum=0.00;QD=7.53;ReadPosRankSum=-1.438e+00;SOR=1.402;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,7:23:99:182,0,439
chr1	109560372	rs33990918	AT	A	359.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.47;SOR=5.670;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:79,9,0
chr1	109617401	.	CA	C	33.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.29;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:16:42,0,16
chr1	109617777	rs112027893	A	G	307.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=23;ExcessHet=3.0103;FS=4.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-9.200e-02;SOR=0.174;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:316,0,352
chr1	109618257	rs673365	C	T	2150.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=1.681;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:658,68,0
chr1	109618308	rs34069017	G	A	771.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DB;DP=28;ExcessHet=6.9897;FS=0.841;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=0.497;SOR=0.887;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,6:28:99:123,0,606
chr1	109630535	rs111427990	G	C	384.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.330e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=0.370;SOR=0.793;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:393,0,328
chr1	109633256	rs521734	C	G	1227.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.19;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=-5.300e-01;SOR=0.473;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:322,0,385
chr1	109633821	rs17838309	C	T	174.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=9;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=-2.410e-01;SOR=3.126;VQSLOD=17.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:62:183,0,62
chr1	109635398	rs512671	A	G	1282.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=15;ExcessHet=6.9897;FS=1.168;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.245;SOR=0.440;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:174,0,264
chr1	109643255	rs112611381	G	T	1352.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-02;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=0.598;SOR=0.683;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,53:131:99:1361,0,2077
chr1	109643380	rs534027	G	C	1516.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=1.25;SOR=1.402;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:256,0,208
chr1	109649048	rs654458	T	A	680.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=8;ExcessHet=6.9897;FS=4.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=-6.190e-01;SOR=0.145;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:99:0|1:109649048_T_A:103,0,458:109649048
chr1	109649053	rs654464	T	C	677.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=10;ExcessHet=6.9897;FS=4.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-4.130e-01;SOR=0.136;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,3:10:99:0|1:109649048_T_A:100,0,490:109649048
chr1	109649499	rs17566978	C	T	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.760e-01;DB;DP=25;ExcessHet=3.0103;FS=5.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=0.538;SOR=0.116;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:216,0,525
chr1	109650484	.	GA	G	325.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DP=39;ExcessHet=3.9794;FS=0.000;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.79;ReadPosRankSum=-7.500e-01;SOR=0.739;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,7:39:53:53,0,688
chr1	109656089	rs183177077	A	G	173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482e+00;DB;DP=57;ExcessHet=3.0103;FS=4.769;MQ=59.12;MQRankSum=0.302;NEGATIVE_TRAIN_SITE;QD=3.04;ReadPosRankSum=-1.300e-01;SOR=0.241;VQSLOD=-1.920e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,14:57:99:182,0,1329
chr1	109656420	rs536176	T	C	875.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.091e+00;DB;DP=19;ExcessHet=6.9897;FS=4.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=0.330;SOR=0.122;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:335,0,238
chr1	109656946	rs667524	T	C	5292.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DB;DP=183;ExcessHet=6.9897;FS=0.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.180;SOR=0.754;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,65:183:99:1455,0,2862
chr1	109704390	rs643197	C	G	8745.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.90;SOR=3.559;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2625,228,0
chr1	109704618	rs678238	A	G	16818.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.44;SOR=1.583;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5383,513,0
chr1	109706880	rs647294	A	G	204.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-1.068e+00;SOR=1.828;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:28:159,0,28
chr1	109714403	rs17014495	C	A	671.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=-1.140e-01;SOR=1.893;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,9:10:10:349,0,10
chr1	109714750	rs2297758	T	C	816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-3.810e-01;SOR=0.763;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:591,0,619
chr1	109714919	rs2297757	A	G	444.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=8;ExcessHet=3.9794;FS=10.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=1.25;SOR=0.314;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:105,0,192
chr1	109716624	rs112903057	T	TAATCA	108.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.15;ReadPosRankSum=0.189;SOR=0.693;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,117
chr1	109716637	.	AT	A	35.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.74;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:15:43,0,15
chr1	109727475	rs649531	T	C	799.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.520e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=-2.166e+00;SOR=2.066;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr1	109732080	rs603285	C	T	1980.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.215e+00;DB;DP=34;ExcessHet=3.9794;FS=1.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=0.043;SOR=0.996;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1188,102,0
chr1	109734157	rs606066	T	C	2724.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.70;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=-1.350e-01;SOR=0.730;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1759,153,0
chr1	109734225	rs643785	G	T	1803.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.194e+00;DB;DP=27;ExcessHet=3.9794;FS=4.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=1.04;SOR=0.653;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1102,81,0
chr1	109734541	rs645128	C	T	5338.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=2.363;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1983,169,0
chr1	109735298	rs658779	T	C	8383.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.86;DB;DP=148;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=0.769;SOR=0.694;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4764,444,0
chr1	109735416	rs659543	A	C	6203.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=94;ExcessHet=3.9794;FS=7.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=1.84;SOR=0.386;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3224,282,0
chr1	109735504	rs659659	T	C	3639.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.23;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=1.39;SOR=0.665;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1944,153,0
chr1	109737063	rs2359246	C	T	2209.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=33;ExcessHet=3.9794;FS=3.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=1.72;SOR=1.085;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1107,99,0
chr1	109737090	rs2359245	G	A	2720.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=45;ExcessHet=3.9794;FS=1.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=1.28;SOR=0.805;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1450,135,0
chr1	109737132	rs2359244	T	C	3153.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.250e-01;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-4.760e-01;SOR=0.661;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1816,185,0
chr1	109737172	rs2359243	C	T	3114.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.750e-01;DB;DP=58;ExcessHet=3.9794;FS=0.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-2.840e-01;SOR=0.769;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1754,174,0
chr1	109737314	rs2359242	T	C	2096.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=25;ExcessHet=3.9794;FS=0.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.97;ReadPosRankSum=0.179;SOR=0.528;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:109737314_T_C:1123,75,0:109737314
chr1	109737320	rs2359241	G	A	2058.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.537;DB;DP=23;ExcessHet=3.9794;FS=1.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.45;ReadPosRankSum=0.101;SOR=0.446;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:72:1|1:109737314_T_C:1079,72,0:109737314
chr1	109740310	rs113482805	A	AGAGAGAGTGTGT	227.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DB;DP=14;ExcessHet=3.0103;FS=2.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.699;SOR=0.211;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:14:99:236,0,406
chr1	109740364	rs17014532	T	G	210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=11;ExcessHet=3.0103;FS=7.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=-1.770e-01;SOR=3.352;VQSLOD=15.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:219,0,171
chr1	109740548	rs2296696	G	T	701.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;DB;DP=41;ExcessHet=3.0103;FS=1.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=0.284;SOR=1.060;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,26:41:99:710,0,334
chr1	109741516	rs10858081	A	C	1328.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=3.967;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:351,30,0
chr1	109742452	rs913178	C	T	1641.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.711e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=-8.170e-01;SOR=0.984;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:814,63,0
chr1	109742485	rs913179	G	A	2233.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.39;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=2.24;SOR=0.991;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1273,99,0
chr1	109743122	rs10745351	T	C	561.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=2.448;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:104,9,0
chr1	109743622	rs3736956	C	T	2186.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850e+00;DB;DP=33;ExcessHet=6.9897;FS=6.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-5.990e-01;SOR=0.288;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:575,0,561
chr1	109745228	rs113287688	A	G	155.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.12;ReadPosRankSum=0.842;SOR=1.981;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:164,0,24
chr1	109745243	rs113835413	G	A	177.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=0.431;SOR=2.303;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:19:186,0,19
chr1	109745618	rs1052878	T	C	6764.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=1.855;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:52:99:1720,150,0
chr1	109771063	rs683182	T	C	7905.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=81;ExcessHet=3.0103;FS=0.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=-5.650e-01;SOR=0.752;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,34:81:99:804,0,1193
chr1	109771881	rs657511	G	T	1768.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.07;SOR=4.849;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:314,24,0
chr1	109773690	rs55823508	AAT	A	48.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.00;SOR=0.027;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:45:57,0,45
chr1	109778577	rs658092	T	C	6244.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=83;ExcessHet=3.0103;FS=3.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=-6.360e-01;SOR=1.031;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:754,0,1221
chr1	109779556	rs631927	T	A	7190.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=1.063;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2110,197,0
chr1	109779621	rs11439617	T	TC	3923.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e-01;DB;DP=33;ExcessHet=3.0103;FS=1.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.43;ReadPosRankSum=0.719;SOR=1.057;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,20:33:99:649,0,388
chr1	109792735	rs10629280	A	ACGC	5475.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DB;DP=83;ExcessHet=6.9897;FS=2.345;MQ=60.00;MQRankSum=0.00;QD=21.82;ReadPosRankSum=0.452;SOR=0.552;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1642,0,1729
chr1	109794252	rs454107	T	C	27546.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.728e+00;DB;DP=351;ExcessHet=3.0103;FS=1.498;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=0.062;SOR=0.524;VQSLOD=6.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,351:351:99:10930,1052,0
chr1	109795026	rs413380	T	C	18262.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.373e+00;DB;DP=224;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=1.56;SOR=0.654;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,224:224:99:7048,672,0
chr1	109795608	rs437444	T	C	16672.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=221;ExcessHet=3.0103;FS=0.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=0.167;SOR=0.865;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,221:221:99:7409,664,0
chr1	109796053	rs2359414	C	T	473.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=35;ExcessHet=3.0103;FS=3.110;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-6.280e-01;SOR=0.276;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:482,0,402
chr1	109804883	rs66795935	C	G	1624.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060e-01;DB;DP=109;ExcessHet=3.0103;FS=0.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=-1.134e+00;SOR=0.776;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,67:109:99:1633,0,913
chr1	109807283	rs6657811	A	T	2949.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.81;DB;DP=102;ExcessHet=3.9794;FS=1.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.46;SOR=0.801;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,45:102:99:1283,0,1578
chr1	109809110	rs593651	G	A	580.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.503;SOR=1.358;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:170,0,178
chr1	109810200	rs72703203	G	A	1494.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.346e+00;DB;DP=94;ExcessHet=3.0103;FS=0.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=1.56;SOR=0.796;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,40:94:99:0|1:109810200_G_A:1503,0,3295:109810200
chr1	109810201	rs72703204	G	A	1494.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962e+00;DB;DP=95;ExcessHet=3.0103;FS=0.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=1.70;SOR=0.842;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:55,40:95:99:0|1:109810200_G_A:1503,0,3295:109810200
chr1	109810544	rs2281894	C	A	1812.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e-02;DB;DP=204;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=-1.580e+00;SOR=0.653;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,76:204:99:1821,0,3350
chr1	109813020	rs3895559	G	A	2683.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DB;DP=79;ExcessHet=6.9897;FS=1.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-3.500e-01;SOR=0.556;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,33:79:99:767,0,1295
chr1	109813236	rs111491315	TTCCCAGTCTTGGGG	T	5480.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DB;DP=129;ExcessHet=6.9897;FS=1.266;MQ=60.00;MQRankSum=0.00;QD=14.27;ReadPosRankSum=0.300;SOR=0.770;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:81,48:129:99:1774,0,11232
chr1	109813510	rs41279716	A	T	385.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=26;ExcessHet=3.0103;FS=10.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.206;SOR=3.126;VQSLOD=12.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:394,0,475
chr1	109813719	rs17035665	C	T	2574.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359e+00;DB;DP=132;ExcessHet=3.9794;FS=1.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-4.410e-01;SOR=0.571;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,55:132:99:1228,0,2152
chr1	109814721	rs614174	G	A	1041.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.233e+00;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-5.080e-01;SOR=0.579;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:1050,0,1274
chr1	109814880	rs4970834	C	T	2871.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=265;ExcessHet=3.0103;FS=2.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-2.530e-01;SOR=0.856;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:150,115:265:99:2880,0,3797
chr1	109815036	rs202085579	C	T	884.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.040e-01;DB;DP=99;ExcessHet=3.0103;FS=2.688;MQ=60.00;MQRankSum=0.00;QD=8.93;ReadPosRankSum=0.927;SOR=1.021;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,40:99:99:893,0,1528
chr1	109815252	rs611917	A	G	4243.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.270e-01;DB;DP=100;ExcessHet=1.5490;FS=4.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=-7.550e-01;SOR=1.054;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3077,300,0
chr1	109816176	rs441853	A	C	30489.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.235e+00;DB;DP=391;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.54;ReadPosRankSum=-4.480e-01;SOR=0.731;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,391:391:99:12101,1174,0
chr1	109822509	rs14000	T	C	124.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=-6.520e-01;SOR=0.941;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:133,0,99
chr1	109823962	rs72703210	T	C	490.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.660e-01;DB;DP=44;ExcessHet=3.0103;FS=2.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-1.200e-02;SOR=0.883;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:499,0,771
chr1	109825360	rs643457	C	T	757.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.660e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.33;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.43;ReadPosRankSum=-1.465e+00;SOR=1.697;VQSLOD=0.187;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr1	109836835	rs3738777	A	G	3216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DB;DP=111;ExcessHet=3.9794;FS=2.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.594;SOR=0.861;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,54:111:99:1391,0,1401
chr1	109838116	rs632514	C	T	1508.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611e+00;DB;DP=21;ExcessHet=3.0103;FS=3.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.44;ReadPosRankSum=0.619;SOR=2.494;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:802,63,0
chr1	109838833	rs616899	T	C	1156.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=9;ExcessHet=3.0103;FS=2.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=-1.044e+00;SOR=1.911;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:352,27,0
chr1	109838918	rs629001	C	T	3530.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=50;ExcessHet=3.9794;FS=1.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=0.282;SOR=0.860;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:602,0,620
chr1	109839063	.	A	AT	253.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432e+00;DP=23;ExcessHet=6.9897;FS=6.755;MQ=60.00;MQRankSum=0.00;QD=3.96;ReadPosRankSum=-3.710e-01;SOR=0.181;VQSLOD=4.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,8:23:99:135,0,265
chr1	109839392	rs604349	A	G	7496.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.759e+00;DB;DP=84;ExcessHet=3.0103;FS=7.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.464;SOR=1.203;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2719,252,0
chr1	109839433	rs1278285	A	G	11920.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=141;ExcessHet=3.0103;FS=3.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=-8.130e-01;SOR=1.030;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4275,421,0
chr1	109839954	rs603624	G	C	3558.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.855;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.95;ReadPosRankSum=1.24;SOR=0.794;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1101,84,0
chr1	109840629	rs600806	G	A	748.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.593e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=-5.890e-01;SOR=3.160;VQSLOD=19.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	109883576	rs3217347	C	CAT	5628.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.45;DB;DP=52;ExcessHet=3.0103;FS=1.927;MQ=59.96;MQRankSum=-9.320e-01;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=0.195;SOR=1.048;VQSLOD=1.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2268,156,0
chr1	109884775	rs2228604	T	G	3759.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=50;ExcessHet=3.0103;FS=5.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.693;SOR=1.282;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1476,110,0
chr1	109897103	rs11142	A	G	7524.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.546;DB;DP=94;ExcessHet=3.0103;FS=1.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-8.730e-01;SOR=0.590;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3003,282,0
chr1	109898263	rs143094090	A	ACC	876.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.690e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.32;ReadPosRankSum=-1.299e+00;SOR=2.147;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:109898263_A_ACC:398,27,0:109898263
chr1	109898267	rs71306129	G	GC	593.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.76;ReadPosRankSum=1.47;SOR=1.358;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:35:0|1:109898263_A_ACC:114,0,35:109898263
chr1	109912051	rs17646665	A	G	1008.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.05;DB;DP=24;ExcessHet=3.9794;FS=1.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.00;ReadPosRankSum=0.293;SOR=1.445;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:327,0,447
chr1	109954355	rs11102979	C	G	272.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.11;SOR=1.179;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
chr1	109955010	rs2303875	C	A	1073.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=0.816;SOR=3.407;VQSLOD=18.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:341,24,0
chr1	109958035	rs1465607	T	C	2425.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.760e-01;DB;DP=31;ExcessHet=3.0103;FS=9.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=1.35;SOR=0.162;VQSLOD=19.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1122,93,0
chr1	110009434	rs2787015	A	C	10300.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.70;DB;DP=124;ExcessHet=3.0103;FS=3.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=-1.147e+00;SOR=1.037;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4437,372,0
chr1	110009654	rs138525393	AC	A	19717.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.674e+00;DB;DP=269;ExcessHet=3.0103;FS=1.535;MQ=60.00;MQRankSum=0.00;QD=24.83;ReadPosRankSum=0.628;SOR=0.517;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,269:269:99:8566,809,0
chr1	110009802	rs2272272	G	A	1631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.540e-01;DB;DP=69;ExcessHet=3.9794;FS=6.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-3.510e-01;SOR=1.324;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,27:69:99:757,0,1280
chr1	110018148	rs530565	C	T	6551.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.12;SOR=2.378;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2020,188,0
chr1	110035071	.	C	T	83.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.150e-01;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.40;ReadPosRankSum=2.99;SOR=0.836;VQSLOD=20.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,4:13:92:92,0,259
chr1	110091282	rs1279195	C	T	1133.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-1.900e-01;SOR=0.747;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:630,0,849
chr1	110148974	rs1799875	C	T	2872.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=79;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-1.000e+00;SOR=0.689;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,28:79:99:626,0,1268
chr1	110155137	rs475858	C	T	439.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=0.703;SOR=0.929;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:97:97,0,179
chr1	110163076	rs6669802	A	G	1072.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DB;DP=34;ExcessHet=6.9897;FS=2.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.221;SOR=1.046;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,11:34:99:218,0,780
chr1	110168888	rs493972	C	G	11093.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.980e-01;DB;DP=172;ExcessHet=3.9794;FS=0.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=-7.000e-03;SOR=0.625;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,172:172:99:5390,516,0
chr1	110169190	rs865774	C	T	1412.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030e-01;DB;DP=69;ExcessHet=3.0103;FS=8.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.279;SOR=0.829;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,43:69:99:1421,0,822
chr1	110169957	rs524998	A	G	11826.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.230e-01;DB;DP=160;ExcessHet=3.0103;FS=4.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=0.405;SOR=0.406;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,160:160:99:4891,480,0
chr1	110170896	rs863978	T	C	8383.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.509;DB;DP=135;ExcessHet=3.9794;FS=1.168;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.592;SOR=0.826;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4274,405,0
chr1	110171525	rs560674	C	G	329.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=2.12;SOR=0.693;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:338,0,330
chr1	110171705	rs523786	A	C	6640.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=99;ExcessHet=3.9794;FS=6.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=0.926;SOR=0.431;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3196,297,0
chr1	110172346	rs5776989	T	TG	4060.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.958e+00;DB;DP=51;ExcessHet=3.0103;FS=3.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=-4.170e-01;SOR=0.302;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1619,153,0
chr1	110172362	rs2269341	C	T	2703.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640e-01;DB;DP=56;ExcessHet=6.9897;FS=7.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=0.184;SOR=0.319;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,33:56:99:893,0,714
chr1	110172658	rs34592756	A	G	2072.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;DB;DP=68;ExcessHet=3.9794;FS=1.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.064;SOR=0.887;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,38:68:99:1205,0,903
chr1	110173775	rs568686	G	T	2664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.245e+00;DB;DP=238;ExcessHet=3.0103;FS=0.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-7.810e-01;SOR=0.655;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,115:238:99:2673,0,3230
chr1	110198727	rs1010167	C	G	702.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=0.489;SOR=1.460;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:195,0,128
chr1	110199209	.	T	TGTGTGTGTGTGC	227.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.30;MQRankSum=0.00;QD=29.14;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:99:235,0,100
chr1	110199225	rs140231844	TG	T	561.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=59.53;MQRankSum=0.00;QD=24.41;ReadPosRankSum=1.75;SOR=0.507;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,9:12:83:297,0,83
chr1	110201580	rs650985	C	T	15825.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=211;ExcessHet=3.0103;FS=3.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=-2.500e-02;SOR=0.731;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,106:211:99:2647,0,2465
chr1	110201699	rs506008	T	C	7017.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=94;ExcessHet=3.0103;FS=3.007;MQ=58.54;MQRankSum=-3.194e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=-3.560e-01;SOR=0.955;VQSLOD=1.300e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,46:94:99:1369,0,1270
chr1	110201809	rs562996	G	T	9837.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.631e+00;DB;DP=91;ExcessHet=3.0103;FS=0.606;MQ=59.40;MQRankSum=-1.957e+00;POSITIVE_TRAIN_SITE;QD=30.42;ReadPosRankSum=0.060;SOR=0.761;VQSLOD=0.661;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,47:91:99:0|1:110201809_G_T:1927,0,2490:110201809
chr1	110201812	rs563003	A	G	9975.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DB;DP=97;ExcessHet=3.0103;FS=0.596;MQ=59.60;MQRankSum=-1.650e+00;POSITIVE_TRAIN_SITE;QD=30.74;ReadPosRankSum=-3.360e-01;SOR=0.778;VQSLOD=0.464;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,51:97:99:0|1:110201809_G_T:1961,0,2487:110201809
chr1	110210780	rs530021	C	G	5693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.51;SOR=0.755;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1786,159,0
chr1	110210818	rs2073483	C	T	2203.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.940e-01;DB;DP=26;ExcessHet=3.0103;FS=3.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=1.23;SOR=1.108;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:75:683,75,0
chr1	110211417	rs183764363	G	A	883.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371e+00;DB;DP=18;ExcessHet=3.9794;FS=6.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=-1.600e-01;SOR=0.137;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,14:18:99:381,0,126
chr1	110211835	rs402505	T	C	8939.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.00;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=44.98;MQRankSum=-5.193e+00;QD=30.92;ReadPosRankSum=2.08;SOR=0.903;VQSLOD=-4.185e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3630,274,0
chr1	110212293	rs3819350	C	A	2641.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.274e+00;DB;DP=33;ExcessHet=3.9794;FS=14.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=0.066;SOR=2.833;VQSLOD=11.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1256,99,0
chr1	110252010	rs1292098	T	C	6051.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.86;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.026;VQSLOD=4.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1543,156,0
chr1	110252091	rs35677255	G	A	1353.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DB;DP=33;ExcessHet=3.9794;FS=2.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=1.12;SOR=1.084;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:457,0,354
chr1	110252262	rs1292097	G	C	495.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=-5.660e-01;SOR=0.770;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:154,0,144
chr1	110254678	rs1758104	G	T	2374.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.27;SOR=6.837;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:838,66,0
chr1	110255167	rs12736389	G	C	1691.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.900e-01;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-1.093e+00;SOR=0.642;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,36:73:99:934,0,985
chr1	110256075	rs2479390	A	G	5479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=176;ExcessHet=3.9794;FS=2.024;MQ=56.33;MQRankSum=6.43;QD=16.07;ReadPosRankSum=0.021;SOR=0.575;VQSLOD=-4.382e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:75,101:176:99:3066,0,2152
chr1	110256127	rs17854972	G	A	3995.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545e+00;DB;DP=328;ExcessHet=3.0103;FS=5.190;MQ=58.66;MQRankSum=-6.859e+00;QD=12.18;ReadPosRankSum=-2.056e+00;SOR=0.967;VQSLOD=-3.731e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:177,151:328:99:4004,0,4805
chr1	110256220	rs7536162	A	C	10269.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=454;ExcessHet=3.9794;FS=0.517;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=2.67;SOR=0.640;VQSLOD=5.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:213,241:454:99:5639,0,5307
chr1	110256507	rs886177	G	A	1806.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=69;ExcessHet=3.9794;FS=4.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.539;SOR=0.393;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,39:69:99:1125,0,718
chr1	110257590	rs2229059	T	C	911.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540e-01;DB;DP=90;ExcessHet=3.0103;FS=0.883;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-2.022e+00;SOR=0.832;VQSLOD=4.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,37:90:99:920,0,1452
chr1	110279602	rs2234696	T	G	59.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-1.645e+00;SOR=1.609;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,69
chr1	110280252	rs36120609	ATCC	A	2873.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=81;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=0.529;SOR=0.644;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,33:81:99:1196,0,2336
chr1	110281941	rs10735234	G	A	2423.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=43;ExcessHet=3.9794;FS=2.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=0.135;SOR=0.488;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:479,0,544
chr1	110282972	rs1332018	G	T	12276.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492e+00;DB;DP=218;ExcessHet=3.9794;FS=0.585;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=-1.545e+00;SOR=0.747;VQSLOD=6.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,95:218:99:2333,0,3350
chr1	110294577	rs2274536	A	G	2161.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=78;ExcessHet=3.9794;FS=14.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-2.210e-01;SOR=1.622;VQSLOD=13.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,36:78:99:1001,0,1089
chr1	110295643	rs1887546	G	T	2158.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232e+00;DB;DP=88;ExcessHet=3.9794;FS=6.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.29;SOR=0.348;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1076,0,1277
chr1	110295772	rs1887547	T	C	10735.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=179;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=0.818;SOR=0.668;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,94:179:99:2204,0,2115
chr1	110295890	rs1887548	C	G	5746.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e+00;DB;DP=71;ExcessHet=3.9794;FS=2.239;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=-8.770e-01;SOR=0.501;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,33:71:99:927,0,1128
chr1	110296017	rs6673976	C	T	685.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=9;ExcessHet=3.9794;FS=5.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=0.00;SOR=0.133;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:145,0,126
chr1	110299550	rs2094469	A	G	526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=47;ExcessHet=3.0103;FS=1.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.958;SOR=0.395;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:535,0,817
chr1	110300504	rs10776700	A	G	10874.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=0.717;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4092,403,0
chr1	110301260	rs6693815	C	T	2062.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=79;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.229;SOR=0.705;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,35:79:99:1077,0,1296
chr1	110301429	rs3831143	AC	A	169.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=3;ExcessHet=3.9794;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.967;SOR=3.126;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:25:60,0,25
chr1	110301766	rs146917181	AGTGTGTGT	A	3954	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=56;ExcessHet=3.9794;FS=7.940;MQ=60.00;MQRankSum=0.00;QD=26.01;ReadPosRankSum=-7.730e-01;SOR=1.999;VQSLOD=4.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,30:56:99:1223,0,1106
chr1	110453358	rs199542023	A	AGTGT	124.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.56;ReadPosRankSum=-8.420e-01;SOR=0.693;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	110456866	rs2297706	C	A	1501.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-01;DB;DP=112;ExcessHet=3.0103;FS=1.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=1.98;SOR=0.697;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,61:112:99:1510,0,1278
chr1	110466338	rs333970	C	A	38560.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=621;ExcessHet=3.9794;FS=0.565;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=0.189;SOR=0.777;VQSLOD=6.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:322,299:621:99:7374,0,7739
chr1	110466466	rs1058885	T	C	3521.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865e+00;DB;DP=313;ExcessHet=3.0103;FS=2.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.718;SOR=0.562;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:175,138:313:99:3530,0,4909
chr1	110466709	rs333971	T	C	25553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=277;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.89;SOR=1.455;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,277:277:99:8973,831,0
chr1	110466810	rs2229166	C	A	1361.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.39;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=-2.320e-01;SOR=0.642;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,41:69:99:1370,0,730
chr1	110467745	rs333972	A	G	4238.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.46;SOR=1.831;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1573,144,0
chr1	110558276	rs11384766	A	AC	5227.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.91;SOR=2.117;VQSLOD=6.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1535,120,0
chr1	110592048	.	CTT	C,CT	868.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.340e-01;DP=15;ExcessHet=3.0103;FS=0.901;MQ=59.68;MQRankSum=0.00;QD=10.10;ReadPosRankSum=-3.160e-01;SOR=0.852;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,5,6:15:19:158,33,128,19,0,60
chr1	110612727	rs705280	T	C	243.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.55;SOR=3.912;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
chr1	110709719	rs7527375	T	C	6646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;DB;DP=102;ExcessHet=6.9897;FS=1.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.86;ReadPosRankSum=-1.125e+00;SOR=0.805;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,64:102:99:0|1:110709719_T_C:2519,0,2220:110709719
chr1	110709720	rs12737742	G	A	6646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e+00;DB;DP=100;ExcessHet=6.9897;FS=2.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=-1.125e+00;SOR=0.856;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,62:100:99:0|1:110709719_T_C:2519,0,2220:110709719
chr1	110714436	rs1007692	A	T	633.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=18;ExcessHet=6.9897;FS=3.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-2.060e-01;SOR=1.255;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:164,0,303
chr1	110716409	rs67632953	ATGAATGGAGCG	A	748.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=-7.100e-01;SOR=0.379;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:99:246,0,232
chr1	110716511	rs12747833	C	T	1893.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=38;ExcessHet=6.9897;FS=5.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=0.396;SOR=1.387;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:623,0,471
chr1	110719089	rs589540	A	G	994.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.361e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=1.29;SOR=1.280;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:312,27,0
chr1	110735037	rs2603583	T	G	2605.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=2.00;SOR=0.633;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:511,0,470
chr1	110741086	rs41306175	C	T	1618.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-8.790e-01;SOR=0.664;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,57:94:99:1627,0,884
chr1	110882444	rs814771	A	G	11126.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=1.376;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3112,276,0
chr1	110883569	rs3738752	A	T	24891.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.13;DB;DP=476;ExcessHet=1.5490;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=0.259;SOR=0.740;VQSLOD=6.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:256,220:476:99:5864,0,6711
chr1	110906247	.	C	CA	67.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.51;ReadPosRankSum=-1.036e+00;SOR=0.892;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:26:47,0,26
chr1	110906780	rs6669004	G	A	946.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=6.439;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	110919903	rs2279722	T	C	176.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.177;SOR=2.179;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:185,0,171
chr1	110922140	rs2946571	G	A	560.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.50;ReadPosRankSum=-7.120e-01;SOR=2.200;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:58:117,0,58
chr1	110924235	rs12120542	T	C	483.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DB;DP=39;ExcessHet=3.0103;FS=1.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-6.060e-01;SOR=0.936;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:492,0,561
chr1	110924353	rs3738750	G	A	3074.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=78;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=0.440;SOR=0.647;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1014,0,791
chr1	110946294	rs12135220	G	A	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=-7.550e-01;SOR=1.609;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:99:216,0,106
chr1	110949720	rs6671673	C	T	2048.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740e-01;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.139;SOR=0.738;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:456,0,527
chr1	110949857	rs6684395	A	T	307.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.50;SOR=4.407;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	110950439	rs6674775	C	T	2502.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=195;ExcessHet=3.0103;FS=5.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.517e+00;SOR=1.040;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,99:195:99:2511,0,2334
chr1	110996325	rs3795828	G	A	868.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=59.54;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.18;ReadPosRankSum=-4.640e-01;SOR=3.180;VQSLOD=0.534;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:170,0,153
chr1	110998665	rs7513898	G	A	507.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=0.328;SOR=0.495;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	110998766	rs7551116	T	A	1919.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.723e+00;DB;DP=30;ExcessHet=3.0103;FS=4.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.66;ReadPosRankSum=0.921;SOR=2.012;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,17:30:99:0|1:110998766_T_A:546,0,390:110998766
chr1	110998854	rs7514102	G	A	4587.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DB;DP=75;ExcessHet=3.0103;FS=1.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.41;ReadPosRankSum=0.398;SOR=0.587;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,32:75:99:809,0,1070
chr1	111059812	rs368922210	C	CGA	832.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=24;ExcessHet=1.5490;FS=1.410;MQ=60.00;MQRankSum=0.00;QD=12.62;ReadPosRankSum=1.45;SOR=0.460;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,23:24:36:786,36,0
chr1	111060669	rs1281175	T	C	7801.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.58;DB;DP=143;ExcessHet=1.5490;FS=7.062;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=0.482;SOR=0.706;VQSLOD=6.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4919,429,0
chr1	111061062	rs1281174	T	C	3874.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.289;DB;DP=76;ExcessHet=1.5490;FS=0.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-7.650e-01;SOR=0.782;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2674,228,0
chr1	111144526	rs4839071	T	G	2137.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=3.952;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:637,51,0
chr1	111215472	rs1058184	A	C	571.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.60;ReadPosRankSum=1.72;SOR=2.093;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:101,0,64
chr1	111217156	.	T	C	1972.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.370e-01;DP=156;ExcessHet=3.0103;FS=1.258;MQ=60.00;MQRankSum=0.00;QD=12.64;ReadPosRankSum=-1.197e+00;SOR=0.585;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,80:156:99:1981,0,1875
chr1	111390624	rs112561357	AT	A	167.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=3.34;ReadPosRankSum=0.526;SOR=0.601;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:19:59:59,0,238
chr1	111434170	rs137933588	CTGGTG	C	3012.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=61;ExcessHet=3.9794;FS=0.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=1.88;SOR=0.611;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,31:61:99:1212,0,1938
chr1	111434351	rs2070747	G	A	559.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=5.421;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr1	111436857	rs1578956	T	G	11199.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.70;SOR=1.505;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,105:105:99:1|1:111436857_T_G:4894,331,0:111436857
chr1	111436858	rs1936943	C	T	11199.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=1.525;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,110:110:99:1|1:111436857_T_G:4894,331,0:111436857
chr1	111437129	rs1343817	A	C	1728.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-02;DB;DP=34;ExcessHet=3.9794;FS=9.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=-1.740e+00;SOR=0.160;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:618,0,381
chr1	111437176	rs5777031	G	GA	1586.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=2.746;VQSLOD=5.58;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:59:605,59,0
chr1	111437421	rs2070749	C	A	2295.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.26;SOR=2.869;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:824,78,0
chr1	111437487	rs74123404	C	T	903.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940e-01;DB;DP=62;ExcessHet=3.0103;FS=7.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-8.960e-01;SOR=1.713;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,33:62:99:912,0,771
chr1	111439527	rs2070750	A	G	996.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.84;SOR=6.439;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr1	111441485	rs11102175	A	G	306.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.74;SOR=2.833;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr1	111441829	rs1803259	C	T	6629.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=0.878;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3070,303,0
chr1	111492807	rs2232044	G	A	418.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457e+00;DB;DP=28;ExcessHet=3.9794;FS=3.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=1.95;SOR=0.223;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:256,0,605
chr1	111492859	rs2232043	T	C	214.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=0.00;SOR=1.085;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:223,0,136
chr1	111494194	rs2232041	C	T	1600.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015e+00;DB;DP=117;ExcessHet=3.0103;FS=4.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=8.000e-03;SOR=0.829;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,63:117:99:1609,0,1350
chr1	111704013	rs143092939	TAA	T	549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=-1.822e+00;SOR=0.340;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,14:24:99:558,0,432
chr1	111726213	rs694180	A	G	398.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.170e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-1.115e+00;SOR=0.801;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:407,0,486
chr1	111726869	rs3795823	G	A	530.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e-01;DB;DP=47;ExcessHet=3.0103;FS=2.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.564;SOR=1.201;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:539,0,593
chr1	111731158	rs2297703	A	G	309.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463e+00;DB;DP=11;ExcessHet=3.0103;FS=7.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=0.792;SOR=3.229;VQSLOD=16.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,10:11:8:318,0,8
chr1	111732003	rs35906145	T	A	1106.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DB;DP=65;ExcessHet=3.0103;FS=3.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=0.904;SOR=0.350;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,40:65:99:1115,0,588
chr1	111737183	rs660173	C	T	420.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-1.728e+00;SOR=0.622;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,15:22:99:429,0,232
chr1	111737398	rs9970286	G	A	682.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437e+00;DB;DP=49;ExcessHet=3.0103;FS=1.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-5.660e-01;SOR=0.936;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:691,0,535
chr1	111739771	rs3833538	G	GCAGGACAAA	5832.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=0.725;VQSLOD=4.64;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,126:126:99:5849,391,0
chr1	111740082	rs600430	T	G	266.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.25;ReadPosRankSum=0.319;SOR=2.833;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr1	111740345	rs599134	C	G	326.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.61;SOR=4.407;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr1	111742714	rs638825	A	C	805.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.89;SOR=3.056;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	111742761	rs639210	T	C	1470.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.67;SOR=2.531;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:349,33,0
chr1	111742838	rs639306	G	C	3792.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=1.992;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:970,81,0
chr1	111742841	rs12756391	A	G	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-2.960e-01;SOR=0.495;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:286,0,389
chr1	111770423	rs755467	T	G	7247.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=103;ExcessHet=3.0103;FS=2.731;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=0.637;SOR=0.803;VQSLOD=7.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3170,309,0
chr1	111770591	rs2147790	A	G	633.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=-3.360e-01;SOR=0.492;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,23:32:99:642,0,217
chr1	111773568	rs2255089	G	C	2480.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=49;ExcessHet=6.9897;FS=0.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.091;SOR=0.618;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,23:49:99:696,0,760
chr1	111773830	rs2147789	A	T	2021.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e-01;DB;DP=40;ExcessHet=6.9897;FS=4.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-3.320e-01;SOR=0.559;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:426,0,577
chr1	111778187	rs2251715	A	G	1486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=37;ExcessHet=6.9897;FS=2.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.615;SOR=0.917;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:358,0,528
chr1	111778241	rs2764544	C	T	5434.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=1.013;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1687,153,0
chr1	111778824	rs2251608	T	C	2433.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.258e+00;DB;DP=32;ExcessHet=3.0103;FS=4.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-1.448e+00;SOR=0.201;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1113,96,0
chr1	111783982	rs13721	C	A,T	3409.63	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.810e-01;DB;DP=83;ExcessHet=1.5490;FS=1.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=-3.620e-01;SOR=0.577;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,37,46:83:99:2270,1227,1116,1043,0,906
chr1	111783996	rs2494007	A	G	9049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=1.104;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2821,267,0
chr1	111784138	rs942694	T	C	1911.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731e+00;DB;DP=59;ExcessHet=3.9794;FS=5.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.286;SOR=0.349;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,35:59:99:903,0,707
chr1	111784148	rs2764551	T	G	7123.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=1.584;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2302,165,0
chr1	111784158	rs942693	T	C	1571.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509e+00;DB;DP=50;ExcessHet=3.9794;FS=6.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.144;SOR=0.291;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:722,0,561
chr1	111784227	rs2182114	C	T	726.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181e+00;DB;DP=23;ExcessHet=3.9794;FS=2.337;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=1.17;SOR=1.061;VQSLOD=6.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:210,0,384
chr1	111784816	rs11102221	G	A	1884.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;DB;DP=65;ExcessHet=3.9794;FS=2.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.335;SOR=0.881;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,31:65:99:802,0,840
chr1	111785550	rs3135451	C	T	1027.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=6.593;VQSLOD=23.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:241,18,0
chr1	111785930	rs1056825	T	C	3092.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.248e+00;DB;DP=46;ExcessHet=3.9794;FS=2.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.829;SOR=0.942;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,45:46:97:1539,97,0
chr1	111786012	rs1056831	T	A	629.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.950e-01;DB;DP=24;ExcessHet=3.9794;FS=4.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-3.110e-01;SOR=1.405;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:223,0,359
chr1	111825754	rs4351635	C	T	187.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.671e+00;DB;DP=21;ExcessHet=3.0103;FS=2.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=-9.790e-01;SOR=0.121;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:196,0,465
chr1	111825883	rs4406629	T	C	6866.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=1.503;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3469,327,0
chr1	111826007	rs58982671	C	T	7034.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DB;DP=157;ExcessHet=1.5490;FS=1.683;MQ=50.63;MQRankSum=0.140;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=1.27;SOR=0.562;VQSLOD=-1.724e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,88:157:99:2251,0,1598
chr1	111833200	rs4546919	T	C	259.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=4.174;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	111833254	rs4554721	G	C	880.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=6.091;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:111833254_G_C:315,21,0:111833254
chr1	111833270	rs4442363	C	T	957.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=6.273;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:111833254_G_C:352,24,0:111833254
chr1	111833441	rs11102235	G	A	4318.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.774;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=-5.520e-01;SOR=0.793;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1503,118,0
chr1	111833488	rs34698010	C	CCT	4543.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.606e+00;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=1.02;SOR=0.511;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,38:39:73:1627,73,0
chr1	111833517	rs12026825	G	A	2442.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.01;SOR=2.303;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:849,81,0
chr1	111833661	rs4838897	T	C	472.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=5.136;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr1	111854005	rs4839120	C	G	957.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=4.892;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr1	111854096	rs4839121	A	G	4879.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=2.483;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1515,120,0
chr1	111854207	rs4839122	T	C	7898.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.97;DB;DP=87;ExcessHet=3.0103;FS=3.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=-5.510e-01;SOR=0.443;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,39:87:99:1143,0,1118
chr1	111854223	rs6537695	C	T	7564.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=0.056;SOR=0.673;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,38:91:99:1026,0,1348
chr1	111854755	rs4423003	A	C	3020.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.41;SOR=2.513;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1161,93,0
chr1	111857087	rs2786151	C	T	449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-4.700e-02;SOR=0.693;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:458,0,463
chr1	111857154	rs2786152	T	C	4621.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=63;ExcessHet=3.9794;FS=2.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.912;SOR=0.529;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:857,0,903
chr1	111857485	rs2820072	A	C	987.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.07;ReadPosRankSum=0.215;SOR=2.910;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,107
chr1	111858291	rs2786155	T	C	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=-1.429e+00;SOR=0.368;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:351,0,325
chr1	111858444	rs2786156	C	T	7038.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=130;ExcessHet=3.9794;FS=1.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=1.13;SOR=0.616;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,51:130:99:1146,0,2059
chr1	111858499	rs6661725	A	G	797.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.020e-01;DB;DP=103;ExcessHet=3.0103;FS=0.775;MQ=60.00;MQRankSum=0.00;QD=7.74;ReadPosRankSum=-1.197e+00;SOR=0.589;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,36:103:99:806,0,1756
chr1	111858525	rs371155945	TAAATATAAGAATAAGA	T	852.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=80;ExcessHet=3.0103;FS=0.986;MQ=60.00;MQRankSum=0.00;QD=10.65;ReadPosRankSum=-1.522e+00;SOR=0.876;VQSLOD=5.34;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:56,24:80:99:0|1:111858525_TAAATATAAGAATAAGA_T:861,0,2281:111858525
chr1	111858542	rs376128132	CACTATCCTTGGCTT	C	876.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.00;ReadPosRankSum=-2.842e+00;SOR=0.711;VQSLOD=4.28;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,25:73:99:0|1:111858525_TAAATATAAGAATAAGA_T:885,0,1920:111858525
chr1	111858589	rs2786157	G	T	307.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.238e+00;DB;DP=33;ExcessHet=3.0103;FS=4.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=-8.430e-01;SOR=0.132;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:316,0,731
chr1	111858603	rs2786158	G	T	272.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026e+00;DB;DP=27;ExcessHet=3.0103;FS=12.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-1.210e+00;SOR=0.017;VQSLOD=16.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:281,0,559
chr1	111861508	rs11102248	T	C	267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.702e+00;SOR=1.071;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:276,0,489
chr1	111861714	rs2786161	T	A	1741.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=39;ExcessHet=3.9794;FS=3.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=2.23;SOR=0.399;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:675,0,513
chr1	111861841	rs2275253	A	G	4413.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=78;ExcessHet=3.9794;FS=2.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=0.025;SOR=0.728;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,40:78:99:941,0,1057
chr1	111861974	rs2275254	T	C	2262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=2.68;SOR=0.694;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:762,0,750
chr1	111862952	rs2256721	T	G	6117.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=132;ExcessHet=3.9794;FS=8.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-6.360e-01;SOR=1.111;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,55:132:99:1499,0,1874
chr1	111863451	rs2282290	A	G	71.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=0.693;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	111963849	.	G	A	335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272e+00;DP=40;ExcessHet=3.0103;FS=1.258;MQ=60.00;MQRankSum=0.00;QD=8.38;ReadPosRankSum=-1.733e+00;SOR=0.469;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,15:40:99:344,0,710
chr1	111970431	rs71652911	TAC	T	578.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e-01;DB;DP=11;ExcessHet=6.9897;FS=1.543;MQ=59.05;MQRankSum=-7.030e-01;QD=14.84;ReadPosRankSum=-4.140e-01;SOR=1.204;VQSLOD=0.328;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:11:72:138,0,72
chr1	112020222	rs3831358	GC	G	1689.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=59.20;QD=33.38;SOR=1.270;VQSLOD=4.38;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:112020222_GC_G:540,36,0:112020222
chr1	112020224	rs115634476	C	A	1689.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=59.20;QD=30.93;SOR=1.270;VQSLOD=3.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:112020222_GC_G:540,36,0:112020222
chr1	112020238	rs2211494	A	C	2738.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.53;QD=28.71;SOR=0.724;VQSLOD=2.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:112020222_GC_G:644,45,0:112020222
chr1	112028577	rs2275796	A	T	1599.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.750e-01;DB;DP=28;ExcessHet=1.5490;FS=3.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-9.520e-01;SOR=1.404;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:367,0,487
chr1	112029193	rs2252739	A	G	2841.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DB;DP=37;ExcessHet=3.9794;FS=4.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=0.867;SOR=0.648;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:354,0,525
chr1	112029325	rs2800906	A	G	5745.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=63;ExcessHet=3.9794;FS=4.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.451;SOR=0.436;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,33:63:99:802,0,733
chr1	112031146	.	CTA	C	231.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.13;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,158
chr1	112032347	rs2789539	G	A	4164.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.550e-01;DB;DP=89;ExcessHet=1.5490;FS=2.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=0.644;SOR=0.928;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,40:89:99:1016,0,1302
chr1	112033456	rs3831359	G	GA	2390.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=46;ExcessHet=1.5490;FS=1.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=-1.186e+00;SOR=0.972;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,26:46:99:735,0,550
chr1	112033515	rs2252198	T	C	1322.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=19;ExcessHet=1.5490;FS=1.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.77;ReadPosRankSum=0.124;SOR=0.400;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,8:19:99:0|1:112033515_T_C:303,0,644:112033515
chr1	112033519	rs2252197	A	G	1319.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=20;ExcessHet=1.5490;FS=1.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.84;ReadPosRankSum=0.347;SOR=0.342;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,8:20:99:0|1:112033515_T_C:300,0,671:112033515
chr1	112042383	rs923	G	A	1174.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.56;ReadPosRankSum=0.524;SOR=3.258;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:109,0,64
chr1	112042632	rs2229155	A	G	7162.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-02;DB;DP=114;ExcessHet=3.9794;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=2.27;SOR=0.828;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,59:114:99:1473,0,1457
chr1	112045463	rs12127443	T	A	888.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=0.366;SOR=0.743;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:254,0,163
chr1	112106342	rs1591711	C	T	2654.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.821;DB;DP=63;ExcessHet=1.5490;FS=4.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.036;SOR=0.358;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1966,189,0
chr1	112106444	rs1591712	G	A	7237.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.132e+00;DB;DP=89;ExcessHet=3.0103;FS=2.357;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=1.21;SOR=0.550;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2667,263,0
chr1	112237831	rs142972345	A	ATAATAT	382.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=4.174;VQSLOD=6.51;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:6:86,6,0
chr1	112237915	rs7525307	A	T	1016.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=5.211;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:375,30,0
chr1	112239851	rs2365323	C	T	686.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=5.892;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
chr1	112240038	.	CT	C	1490.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-01;DP=74;ExcessHet=6.9897;FS=0.511;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.01;ReadPosRankSum=1.53;SOR=0.752;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,16:74:99:198,0,987
chr1	112251983	rs3738300	C	G	4450.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=1.508;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1816,168,0
chr1	112266055	rs3839026	G	GC	470.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.97;SOR=2.147;VQSLOD=5.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr1	112269677	rs34772471	C	T	1160.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=0.959;SOR=0.710;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,49:128:99:1169,0,2015
chr1	112269872	rs197434	G	A	19916.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=190;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=-5.000e-02;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=0.310;SOR=1.217;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,190:190:99:6023,570,0
chr1	112302412	rs197399	T	C	775.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=51.64;NEGATIVE_TRAIN_SITE;QD=30.44;SOR=6.184;VQSLOD=2.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:302,24,0
chr1	112305406	.	TA	T	1274.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DP=79;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=5.85;ReadPosRankSum=0.137;SOR=0.678;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,23:79:99:345,0,1014
chr1	112321322	rs2813867	T	C	856.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.17;SOR=4.615;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr1	112525085	rs17221819	G	A	10963.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=328;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=1.566;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,328:328:99:10980,984,0
chr1	112533520	rs61742877	T	G	1386.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=0.929;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1403,135,0
chr1	112533746	rs61746626	C	T	3976.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DB;DP=134;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.67;ReadPosRankSum=2.01;SOR=0.889;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,132:134:99:3993,347,0
chr1	112534017	rs66461719	T	TG	855.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.102;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=0.434;SOR=2.517;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:668,57,0
chr1	112991698	rs2256883	T	C	1415.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DB;DP=58;ExcessHet=3.9794;FS=3.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=1.07;SOR=1.030;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:711,0,727
chr1	112999227	rs1175641	G	A	4009.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780e-01;DB;DP=97;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-7.500e-02;SOR=0.673;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,45:97:99:1275,0,1558
chr1	113051730	rs11102484	C	G	158.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.63;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	113052155	rs3790605	C	G	1293.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.973e+00;DB;DP=24;ExcessHet=1.5490;FS=2.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=-6.700e-01;SOR=1.179;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:852,72,0
chr1	113052186	rs3790606	G	C	969.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.912e+00;DB;DP=15;ExcessHet=1.5490;FS=1.230;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=0.397;SOR=0.947;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:563,45,0
chr1	113059220	rs351372	T	A	601.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.454e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.66;ReadPosRankSum=0.651;SOR=1.358;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:360,27,0
chr1	113196197	rs2932528	A	T	314.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=59.26;QD=12.08;SOR=1.220;VQSLOD=-8.995e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:331,27,0
chr1	113201412	rs2932535	G	C	144.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	113202417	rs2932536	G	A	2279.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.370e+00;DB;DP=60;ExcessHet=1.5490;FS=0.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=-5.960e-01;SOR=0.883;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1865,180,0
chr1	113234456	rs2932532	G	A	5543.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=129;ExcessHet=1.5490;FS=3.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=0.260;SOR=0.774;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3873,385,0
chr1	113239478	rs2999158	T	C	4344.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=1.131;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1998,192,0
chr1	113240376	rs72701115	G	C	57.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,73
chr1	113242488	rs3013431	C	T	10156.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=0.4576;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.66;SOR=0.739;VQSLOD=4.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4656,440,0
chr1	113244433	rs2279500	T	C	5016.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.41;SOR=2.189;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2583,225,0
chr1	113246229	rs937053	T	A	2999.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=6.413;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1437,107,0
chr1	113248365	rs954679	A	G	2379.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.33;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=0.753;SOR=0.800;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:950,78,0
chr1	113252614	rs41310100	C	A	2509.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=38;ExcessHet=3.9794;FS=0.628;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.648;SOR=0.602;VQSLOD=6.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1177,114,0
chr1	113254267	rs7522283	G	C	1792.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.400e-01;DB;DP=16;ExcessHet=3.0103;FS=1.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=1.33;SOR=1.096;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:521,48,0
chr1	113254484	rs4839258	A	G	1378.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.43;SOR=2.774;VQSLOD=18.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:452,39,0
chr1	113255212	rs12137976	G	T	1786.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.994e+00;DB;DP=42;ExcessHet=3.9794;FS=1.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.797;SOR=0.331;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:718,0,736
chr1	113255389	rs10857971	C	T	1480.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.550e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.85;ReadPosRankSum=0.184;SOR=1.085;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:547,48,0
chr1	113255686	rs147819439	T	TTG	230.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=1.44;SOR=0.914;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:124,0,99
chr1	113256382	rs45492096	A	C	1480.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.597e+00;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.83;ReadPosRankSum=0.153;SOR=0.272;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:467,0,505
chr1	113456546	rs1049434	A	T	1295.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=101;ExcessHet=3.0103;FS=1.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.037;SOR=0.518;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,50:101:99:1304,0,1159
chr1	113471629	rs10627911	C	CT	290.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DB;DP=34;ExcessHet=3.0103;FS=2.907;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.496;SOR=0.402;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,15:34:99:299,0,298
chr1	113616382	rs56062000	G	GA	3689.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=4.534;VQSLOD=6.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1139,96,0
chr1	113636924	rs1216802	T	C	3185.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=5.211;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:869,66,0
chr1	113641103	rs1216809	G	C	1040.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.85;POSITIVE_TRAIN_SITE;QD=30.95;SOR=6.518;VQSLOD=6.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0
chr1	113641614	rs1310142	A	G	392.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.72;SOR=4.804;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	113652632	.	C	T	31.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.49;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:40,0,32
chr1	113653257	rs41299575	G	C	344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=34;ExcessHet=3.0103;FS=1.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=0.508;SOR=0.432;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:353,0,515
chr1	113657092	rs1216793	A	C	12311.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=0.114;SOR=1.428;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,117:119:99:3571,306,0
chr1	113657538	rs17442872	G	A	462.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.10;ReadPosRankSum=1.23;SOR=0.399;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:471,0,291
chr1	113658887	rs1216791	G	A	9165.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=1.024;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2352,214,0
chr1	113658913	rs41312692	G	A	923.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559e+00;DB;DP=76;ExcessHet=3.0103;FS=0.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.937;SOR=0.829;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:932,0,1191
chr1	113659065	rs10541977	ACT	A	16155.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.09;SOR=1.321;VQSLOD=5.69;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,115:115:99:5104,345,0
chr1	113666351	rs1728222	G	T	1014.15	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.330e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.73;ReadPosRankSum=0.816;SOR=2.833;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:113666351_G_T:405,27,0:113666351
chr1	113666353	rs1728223	G	T	463.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.992e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.33;ReadPosRankSum=0.131;SOR=0.859;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:113666351_G_T:405,27,0:113666351
chr1	113933482	rs10857994	C	G	394.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=13;ExcessHet=3.9794;FS=3.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=0.712;SOR=2.093;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:218,0,256
chr1	113933570	rs12568854	G	A	650.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=1.70;SOR=1.022;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:659,0,662
chr1	114092306	rs10858004	A	G	1348.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.960e-01;DB;DP=43;ExcessHet=6.9897;FS=2.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=1.42;SOR=0.495;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:411,0,703
chr1	114133022	rs59211723	AT	A	268.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=1.83;SOR=1.765;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:50:50,0,50
chr1	114137013	rs3834733	C	CAT	941.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=13;ExcessHet=3.9794;FS=4.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=2.26;SOR=2.753;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:321,0,190
chr1	114161116	rs1217200	C	A	1508.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654e+00;DB;DP=39;ExcessHet=3.9794;FS=2.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.431;SOR=0.472;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,13:39:99:252,0,752
chr1	114162194	rs1217192	G	A	135.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:72,0,36
chr1	114162619	rs1217193	C	G	504.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.66;ReadPosRankSum=0.967;SOR=3.126;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:149,0,28
chr1	114191994	rs1743594	G	A	7756.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=216;ExcessHet=6.9897;FS=1.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.220;SOR=0.792;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,109:216:99:2740,0,2475
chr1	114196883	rs1146182	C	A	229.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.21;MQRankSum=-4.310e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=0.00;SOR=2.584;VQSLOD=0.464;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:35:74,0,35
chr1	114215083	rs3081628	CTCTGA	C	1381.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.36;SOR=6.932;VQSLOD=6.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr1	114224782	rs11438160	A	AT	841.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270e-01;DB;DP=42;ExcessHet=6.9897;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=0.490;SOR=0.757;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,11:42:99:185,0,395
chr1	114234690	rs12138638	C	T	635.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=-9.520e-01;SOR=0.392;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:98:243,0,98
chr1	114240319	rs3835263	T	TA	5696.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-01;DB;DP=94;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=-1.970e-01;SOR=0.685;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,45:94:99:1398,0,1551
chr1	114240774	rs143096006	AACACACAC	A,AACACAC	1528.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.15;SOR=5.031;VQSLOD=6.42;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,3,5:8:86:260,153,201,104,0,86
chr1	114249382	rs6698586	C	T	3065.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=33;ExcessHet=3.9794;FS=0.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=0.879;SOR=0.775;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:339,0,485
chr1	114249473	.	CTTT	C	169.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=6.9897;FS=0.000;MQ=59.38;MQRankSum=0.00;QD=12.08;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:30:71,0,30
chr1	114256139	rs3789597	C	T	408.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=0.179;SOR=0.776;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,135
chr1	114267347	rs1230640	C	T	2510.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;DB;DP=35;ExcessHet=3.9794;FS=2.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.171;SOR=0.471;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:533,0,406
chr1	114280717	rs2273758	A	C	2447.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=39;ExcessHet=3.9794;FS=0.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=1.38;SOR=0.815;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:403,0,475
chr1	114301335	rs61817589	C	T	692.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-8.350e-01;SOR=0.696;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,33:68:99:701,0,731
chr1	114309172	rs1935836	C	T	993.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623e+00;DB;DP=14;ExcessHet=6.9897;FS=3.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-1.470e-01;SOR=0.099;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:235,0,268
chr1	114339956	rs34169583	C	CTAAA	3050.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DB;DP=36;ExcessHet=3.9794;FS=5.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=-1.312e+00;SOR=1.498;VQSLOD=6.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,21:36:99:837,0,828
chr1	114367588	.	CA	C	193.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=9;ExcessHet=6.9897;FS=10.656;MQ=59.75;MQRankSum=0.00;QD=6.90;ReadPosRankSum=-4.390e-01;SOR=3.037;VQSLOD=0.817;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,4:9:55:55,0,74
chr1	114372332	rs57877024	TA	T	1808.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=51;ExcessHet=3.9794;FS=0.790;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.368;SOR=0.614;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,26:51:99:577,0,463
chr1	114377093	rs1599971	A	G	4063.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=66;ExcessHet=3.9794;FS=2.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=0.377;SOR=0.979;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,43:66:99:1166,0,473
chr1	114377148	rs1970559	T	C	1215.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137e+00;DB;DP=33;ExcessHet=6.9897;FS=2.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-1.018e+00;SOR=1.179;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:562,0,379
chr1	114377568	rs2476601	A	G	8093.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.10;SOR=0.956;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1796,203,0
chr1	114396955	rs2476602	G	A	1176.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=0.861;SOR=0.436;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:313,0,168
chr1	114397788	rs3789608	C	T	254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.843e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=1.67;SOR=0.283;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:263,0,221
chr1	114400804	rs1217416	C	T	348.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.69;ReadPosRankSum=0.674;SOR=2.494;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:70,0,61
chr1	114401231	rs1217418	A	G	1059.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DB;DP=14;ExcessHet=3.9794;FS=11.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=0.947;SOR=0.058;VQSLOD=17.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:230,0,168
chr1	114401265	.	C	CT	104.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.55;ReadPosRankSum=0.566;SOR=0.250;VQSLOD=5.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,2:5:31:31,0,58
chr1	114401904	rs1217419	T	G	2923.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=25;ExcessHet=3.9794;FS=3.781;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=0.694;SOR=0.344;VQSLOD=7.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:427,0,382
chr1	114423544	rs11354239	AC	A	560.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.98;ReadPosRankSum=0.00;SOR=3.383;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:271,21,0
chr1	114423653	rs1217382	C	T	3311.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.055e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=1.77;SOR=0.625;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1129,107,0
chr1	114424601	rs1217381	C	T	3464.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.97;SOR=1.329;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1402,126,0
chr1	114429340	rs1746860	T	C	2250.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.207e+00;DB;DP=26;ExcessHet=3.0103;FS=3.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=0.684;SOR=0.414;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:796,78,0
chr1	114438951	rs1217401	A	G	5060.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.587e+00;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=1.29;SOR=0.679;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1826,144,0
chr1	114439190	.	A	G	197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DP=15;ExcessHet=3.0103;FS=3.136;MQ=60.00;MQRankSum=0.00;QD=13.15;ReadPosRankSum=0.343;SOR=2.066;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:206,0,257
chr1	114440258	rs1217402	C	G	663.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.017e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.65;ReadPosRankSum=-1.437e+00;SOR=0.407;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:352,27,0
chr1	114447914	rs971173	G	T	280.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=4.174;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr1	114472218	rs1217441	A	G	5751.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=70;ExcessHet=3.0103;FS=6.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=-4.200e-01;SOR=1.399;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,31:70:99:938,0,1074
chr1	114472321	rs35024348	C	A	506.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=1.83;SOR=1.501;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:31:31,0,128
chr1	114512939	rs3811018	A	T	4231.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e-01;DB;DP=39;ExcessHet=3.0103;FS=3.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=-2.690e-01;SOR=0.363;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:450,0,670
chr1	114515717	rs2358996	G	A	13726.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=246;ExcessHet=3.9794;FS=1.894;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.753;SOR=0.553;VQSLOD=6.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,118:246:99:2726,0,2993
chr1	114523465	rs3789614	A	G	2940.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DB;DP=46;ExcessHet=3.9794;FS=4.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=0.297;SOR=1.292;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:648,0,701
chr1	114634962	rs10858031	G	C	328.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=6.9897;FS=7.014;MQ=60.00;MQRankSum=0.00;QD=10.26;ReadPosRankSum=0.608;SOR=2.867;VQSLOD=15.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:10:5:238,0,5
chr1	114641685	rs2774285	A	G	5293.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=51;ExcessHet=3.0103;FS=10.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.29;ReadPosRankSum=-4.710e-01;SOR=1.647;VQSLOD=18.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1611,153,0
chr1	114646489	rs750905	C	T	230.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.14;SOR=3.912;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:247,18,0
chr1	114680540	rs17032441	C	T	3469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=296;ExcessHet=3.0103;FS=1.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-5.100e-02;SOR=0.786;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:154,142:296:99:3478,0,3615
chr1	114680745	rs11102739	C	A	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-7.260e-01;SOR=0.540;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:363,0,384
chr1	114681932	rs2629808	T	C	706.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.29;SOR=5.784;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	114682028	rs17534892	G	A	642.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.77;SOR=2.303;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:659,54,0
chr1	114682780	rs2774303	G	C	564.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=2.985;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:178,12,0
chr1	114940632	rs5777192	CA	C	2776.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.090;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=0.612;SOR=0.607;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:33:99:896,103,0
chr1	114947935	rs1230795	G	A	1555.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.72;SOR=7.476;VQSLOD=24.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:407,33,0
chr1	114948281	rs6537825	A	G	13913.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.781e+00;DB;DP=152;ExcessHet=3.0103;FS=0.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=0.247;SOR=0.818;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4809,455,0
chr1	115110989	.	CT	C	218.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DP=13;ExcessHet=3.9794;FS=1.543;MQ=60.00;MQRankSum=0.00;QD=5.32;ReadPosRankSum=0.931;SOR=0.357;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:13:39:39,0,194
chr1	115128087	rs222493	A	G	1436.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=3.442;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:440,30,0
chr1	115136981	rs116640265	G	A	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.404;SOR=0.693;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:351,0,326
chr1	115144703	rs28398	A	G	10646.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.96;SOR=0.859;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3128,294,0
chr1	115165472	rs222502	T	A	1484.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.42;SOR=5.943;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:385,30,0
chr1	115165869	rs1484835	T	C	706.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=0.00;SOR=0.756;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:53:248,0,53
chr1	115166350	rs148413143	ATTGT	A	1761.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.27;SOR=5.136;VQSLOD=6.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	115168097	rs12136548	T	C	5221.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.66;DB;DP=99;ExcessHet=1.5490;FS=1.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.84;ReadPosRankSum=0.376;SOR=0.863;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3235,297,0
chr1	115216886	rs6701427	C	T	374.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.01;SOR=3.056;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	115220420	rs61401956	C	CTCCTTCCTTCCT	801.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=5.310;MQ=56.96;MQRankSum=0.00;QD=32.08;ReadPosRankSum=0.967;SOR=0.132;VQSLOD=4.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:99:121,0,246
chr1	115222434	rs761755	G	A	1414.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.37;SOR=3.855;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:376,30,0
chr1	115222478	rs743041	G	A	450.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.210e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.18;ReadPosRankSum=-7.550e-01;SOR=1.292;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr1	115238016	rs68036474	CA	C	2055.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=46;ExcessHet=3.0103;FS=2.270;MQ=59.90;MQRankSum=2.93;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=1.88;SOR=1.167;VQSLOD=0.834;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,41:46:16:896,16,0
chr1	115256669	rs969273	G	A	3478.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.466e+00;DB;DP=36;ExcessHet=3.0103;FS=1.585;MQ=59.07;MQRankSum=0.465;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.73;ReadPosRankSum=1.71;SOR=0.380;VQSLOD=0.602;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1317,108,0
chr1	115266306	rs2007231	C	T	1051.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.10;ReadPosRankSum=1.08;SOR=4.479;VQSLOD=13.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:365,27,0
chr1	115269211	rs2144428	G	A	633.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.27;SOR=4.174;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr1	115319269	rs34656268	A	AT	287.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.49;MQRankSum=0.00;QD=13.05;ReadPosRankSum=0.426;SOR=1.329;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:34:34,0,87
chr1	115398044	rs60659641	GC	G	3086.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=2.880;VQSLOD=5.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1272,123,0
chr1	115401136	rs360615	G	A	6176.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=2.901;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2163,194,0
chr1	115452848	rs12117860	G	A	122.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=-2.130e-01;SOR=0.330;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:131,0,278
chr1	115455878	.	G	A	105.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.05;ReadPosRankSum=-5.240e-01;SOR=0.693;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:21:114,0,21
chr1	115527284	rs78016663	C	G	523.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DB;DP=39;ExcessHet=3.0103;FS=2.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.652;SOR=1.445;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:532,0,376
chr1	115576023	rs10776792	A	G	15001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.26;SOR=1.152;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4647,447,0
chr1	115576393	rs77669989	C	T	135.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=-8.420e-01;SOR=1.609;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:144,0,60
chr1	115596252	rs10776794	T	C	442.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.738e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=-5.280e-01;SOR=1.863;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:258,21,0
chr1	115601615	rs7523818	A	G	6169.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=2.177;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1729,170,0
chr1	115603340	rs6537853	C	G	823.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.74;SOR=6.184;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:308,24,0
chr1	115631628	rs4590672	A	G	296.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.89;SOR=1.402;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr1	115631645	rs112033165	A	ACCGCCAGGGC	475.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=1.609;VQSLOD=3.51;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	115631924	rs4240540	C	T	11732.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=59.77;POSITIVE_TRAIN_SITE;QD=31.62;SOR=0.886;VQSLOD=3.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3284,325,0
chr1	115829313	rs6330	G	A	14973.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=191;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=0.804;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,191:191:99:6516,571,0
chr1	116202126	rs112129025	CTGTGTG	C	418.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=1.5490;FS=8.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=-8.420e-01;SOR=4.977;VQSLOD=1.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:99:156,0,122
chr1	116224788	rs10923174	T	C	426.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:116224788_T_C:270,18,0:116224788
chr1	116224792	rs10923175	C	T	426.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:116224788_T_C:270,18,0:116224788
chr1	116224925	rs10923176	G	A	1421.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.25;ReadPosRankSum=1.08;SOR=0.906;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:553,48,0
chr1	116224940	rs10754330	C	A	2053.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.697e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=1.83;SOR=0.988;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:881,78,0
chr1	116225180	rs10923177	A	C	1962.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.16;ReadPosRankSum=-7.900e-01;SOR=0.739;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:586,54,0
chr1	116226459	rs12144356	C	T	1854.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.319e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.02;ReadPosRankSum=-4.140e-01;SOR=3.830;VQSLOD=16.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:606,45,0
chr1	116226749	rs200875190	T	TTTTA	271.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=13;ExcessHet=3.9794;FS=5.704;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=1.97;SOR=2.428;VQSLOD=5.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,4:13:99:140,0,343
chr1	116226862	rs4631691	T	C	100.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=2.833;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr1	116227638	rs11800022	T	C	364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.684;SOR=1.127;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:222,0,211
chr1	116227664	rs11811813	C	T	455.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=0.631;SOR=0.917;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:316,0,281
chr1	116228220	rs12145661	C	T	4115.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DB;DP=48;ExcessHet=3.0103;FS=4.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=-1.266e+00;SOR=1.276;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1608,143,0
chr1	116234083	rs3811013	T	A	57.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-1.645e+00;SOR=0.223;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:66,0,65
chr1	116243724	rs28730710	A	G	142.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:74,0,34
chr1	116243877	rs7413162	G	A	1991.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=37;ExcessHet=1.5490;FS=2.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=-1.256e+00;SOR=1.101;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1215,111,0
chr1	116244166	rs80057683	C	T	80.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=0.199;SOR=0.693;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:89:89,0,244
chr1	116245655	rs12402684	G	C	351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520e-01;DB;DP=64;ExcessHet=3.0103;FS=1.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.49;ReadPosRankSum=-5.880e-01;SOR=0.866;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,19:64:99:360,0,1143
chr1	116245809	rs6667224	C	T	1390.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.429e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=-6.510e-01;SOR=1.453;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:284,24,0
chr1	116247790	rs3811003	G	A	2947.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;DB;DP=46;ExcessHet=3.9794;FS=1.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=0.132;SOR=0.975;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:769,0,515
chr1	116260532	rs2997741	A	T	3819.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=64;ExcessHet=3.9794;FS=3.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=1.29;SOR=1.033;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2127,192,0
chr1	116260604	rs2997742	G	A	2285.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.082;DB;DP=42;ExcessHet=3.9794;FS=1.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=0.729;SOR=0.486;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1351,126,0
chr1	116268178	.	GAAAA	G,GAA	1643.29	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.169e+00;DP=36;ExcessHet=3.9794;FS=2.563;MQ=59.77;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.82;ReadPosRankSum=0.622;SOR=1.239;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,13,12:36:99:909,270,362,311,0,275
chr1	116268283	rs4475752	C	T	1314.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.500e-02;DB;DP=24;ExcessHet=3.9794;FS=3.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=1.06;SOR=0.280;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:735,72,0
chr1	116283343	rs9428083	A	G	3769.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.932;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=-1.127e+00;SOR=0.862;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1314,129,0
chr1	116283526	rs7538337	G	A	1681.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.57;ReadPosRankSum=-5.640e-01;SOR=0.963;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,21:23:19:632,19,0
chr1	116283625	rs7551613	A	G	281.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.22;SOR=4.174;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	116287305	rs10127797	C	T	494.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:155,0,65
chr1	116287634	rs10801969	A	G	926.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082e+00;DB;DP=23;ExcessHet=3.9794;FS=1.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-3.080e-01;SOR=0.372;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:318,0,350
chr1	116287651	rs10801970	G	A	709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=15;ExcessHet=3.9794;FS=7.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=0.675;SOR=0.105;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:215,0,234
chr1	116287682	rs9428211	T	C	955.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=-1.302e+00;SOR=0.929;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:190,0,176
chr1	116310818	rs4484922	G	C	1122.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.857e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=1.000e-03;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:238,0,222
chr1	116310967	rs4074536	T	C	4923.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.335;DB;DP=134;ExcessHet=6.9897;FS=0.523;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-3.500e-02;SOR=0.614;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,59:134:99:1402,0,1814
chr1	116311198	rs4074537	T	C	2731.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=3.726;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:842,77,0
chr1	116311366	.	G	GCACA	153.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.66;ReadPosRankSum=1.83;SOR=0.693;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:99:162,0,143
chr1	116519592	rs10923923	G	C	239.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.24;SOR=4.174;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:254,21,0
chr1	116534852	rs4046190	C	T	3677.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.717e+00;DB;DP=83;ExcessHet=1.5490;FS=1.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.143;SOR=0.856;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2507,247,0
chr1	116569530	rs2488429	G	C	3843.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=1.940;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1595,150,0
chr1	116574306	rs6666101	G	A	394.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=4.977;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:286,24,0
chr1	116577981	rs1935828	G	A	4827.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=3.109;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1141,93,0
chr1	116607254	rs1281748	G	T	2090.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.10;SOR=6.556;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:664,48,0
chr1	116609126	rs3833541	TC	T	3476.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=70;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=1.72;SOR=0.731;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,22:70:99:546,0,1400
chr1	116655183	.	G	GA	205.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460e-01;DP=30;ExcessHet=3.0103;FS=2.709;MQ=60.00;MQRankSum=0.00;QD=7.07;ReadPosRankSum=1.36;SOR=0.365;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,11:30:99:213,0,381
chr1	116655381	rs139021400	GACACATAAAA	G	240.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180e-01;DB;DP=35;ExcessHet=3.0103;FS=1.640;MQ=59.94;MQRankSum=-1.769e+00;POSITIVE_TRAIN_SITE;QD=6.86;ReadPosRankSum=-3.900e-02;SOR=0.375;VQSLOD=1.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,8:35:99:249,0,3078
chr1	116655492	rs1146356	A	G	354.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=10;ExcessHet=3.9794;FS=5.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.908;SOR=2.147;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:138,0,154
chr1	116669878	rs17459041	G	A	157.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:166,0,146
chr1	116916645	rs11289194	CT	C	604.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.89;SOR=3.258;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:152,12,0
chr1	116932563	rs850609	T	A	3040.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=6.330;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:754,54,0
chr1	116933158	rs56293453	G	GT	252.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=13;ExcessHet=3.9794;FS=8.313;MQ=59.76;MQRankSum=0.00;QD=7.88;ReadPosRankSum=1.00;SOR=2.257;VQSLOD=3.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,5:13:85:85,0,167
chr1	116940481	.	CT	C	441.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-01;DP=88;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.98;ReadPosRankSum=-6.520e-01;SOR=0.713;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,20:88:99:286,0,1337
chr1	116948712	rs850610	G	A	921.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.06;ReadPosRankSum=0.619;SOR=4.091;VQSLOD=19.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr1	117121865	rs12066192	G	A	745.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.928e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-1.351e+00;SOR=0.737;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:242,0,331
chr1	117122285	.	G	GTCC	3696.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DP=165;ExcessHet=3.9794;FS=9.516;MQ=60.00;MQRankSum=0.00;QD=10.97;ReadPosRankSum=3.53;SOR=1.143;VQSLOD=1.48;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:104,61:165:99:2209,0,4921
chr1	117122288	rs647711	G	C	5255.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=150;ExcessHet=3.9794;FS=3.860;MQ=60.00;MQRankSum=0.00;QD=17.17;ReadPosRankSum=1.77;SOR=0.915;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,61:150:99:2527,0,4893
chr1	117146629	.	T	C	3256.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DP=199;ExcessHet=6.9897;FS=5.893;MQ=55.59;MQRankSum=-5.217e+00;QD=5.72;ReadPosRankSum=-8.500e-01;SOR=1.177;VQSLOD=-2.980e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:139,60:199:99:1252,0,4065
chr1	117150480	rs113655345	T	C	148.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=57.35;MQRankSum=-4.261e+00;NEGATIVE_TRAIN_SITE;QD=3.22;ReadPosRankSum=-9.600e-02;SOR=0.020;VQSLOD=-3.390e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,3:20:75:0|1:117150480_T_C:75,0,1226:117150480
chr1	117150488	rs111304243	G	A	203.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.14;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=55.86;MQRankSum=-4.261e+00;NEGATIVE_TRAIN_SITE;QD=3.98;ReadPosRankSum=-6.350e-01;SOR=0.053;VQSLOD=-3.964e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,3:20:75:0|1:117150480_T_C:75,0,1230:117150480
chr1	117150966	rs79107296	G	T	4332.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=113;ExcessHet=6.9897;FS=15.201;MQ=56.80;MQRankSum=-8.205e+00;QD=11.46;ReadPosRankSum=-2.850e-01;SOR=1.368;VQSLOD=-4.637e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:68,45:113:99:1179,0,1785
chr1	117151062	rs78660628	C	T	1052.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795e+00;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=57.38;MQRankSum=-4.805e+00;NEGATIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.341;SOR=0.677;VQSLOD=-2.747e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,7:24:99:0|1:117151062_C_T:243,0,869:117151062
chr1	117151066	rs79155130	G	A	1036.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=57.40;MQRankSum=-4.521e+00;NEGATIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.037;SOR=0.245;VQSLOD=-2.708e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,7:20:99:0|1:117151062_C_T:252,0,767:117151062
chr1	117151079	rs74866769	G	A	883.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.288e+00;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=57.55;MQRankSum=-3.893e+00;NEGATIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-1.013e+00;SOR=0.257;VQSLOD=-2.273e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,7:18:99:0|1:117151079_G_A:261,0,636:117151079
chr1	117151085	rs78995719	A	G	817.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.565e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=57.32;MQRankSum=-3.889e+00;NEGATIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-1.065e+00;SOR=0.260;VQSLOD=-2.437e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,7:16:99:0|1:117151079_G_A:261,0,636:117151079
chr1	117151123	rs374322483	A	G	84.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=52.26;MQRankSum=-2.369e+00;NEGATIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-1.292e+00;SOR=0.368;VQSLOD=-3.239e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:91:91,0,178
chr1	117158497	rs61786653	C	T	271.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=51.27;MQRankSum=-2.369e+00;NEGATIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.524;SOR=0.387;VQSLOD=-3.164e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:107,0,64
chr1	117158972	rs3965246	A	G	204.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103e+00;DB;DP=21;ExcessHet=6.9897;FS=10.328;MQ=44.22;MQRankSum=-4.379e+00;QD=3.25;ReadPosRankSum=0.538;SOR=0.098;VQSLOD=-4.193e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,4:21:36:36,0,531
chr1	117214728	rs676886	A	T	120.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=1.609;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	117236970	rs614477	G	C	5654.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=47;ExcessHet=3.9794;FS=3.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=1.16;SOR=1.047;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:720,0,729
chr1	117249070	rs138115464	CT	C	1056.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=76;ExcessHet=3.0103;FS=1.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-2.950e-01;SOR=0.957;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,32:76:99:1065,0,1557
chr1	117303400	rs3136705	C	T	230.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=1.61;SOR=0.250;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:74:122,0,74
chr1	117487099	rs4638114	G	T	125.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-1.611e+00;SOR=1.179;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:134,0,106
chr1	117487165	rs75012670	G	A	296.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.334e+00;DB;DP=24;ExcessHet=3.0103;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=1.22;SOR=0.252;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:305,0,245
chr1	117487270	rs56209138	G	A	1265.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=31;ExcessHet=6.9897;FS=4.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.417;SOR=1.170;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:301,0,589
chr1	117487710	rs10159095	A	G	16890.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.98;DB;DP=164;ExcessHet=3.0103;FS=3.700;MQ=59.97;MQRankSum=0.988;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=0.782;SOR=1.018;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,164:164:99:1|1:117487710_A_G:7355,494,0:117487710
chr1	117487711	rs4546904	T	A	16890.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.284;DB;DP=163;ExcessHet=3.0103;FS=2.622;MQ=59.97;MQRankSum=0.994;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=0.683;SOR=0.995;VQSLOD=1.48;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,163:163:99:1|1:117487710_A_G:7355,494,0:117487710
chr1	117487884	rs10923173	G	A	1594.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=21;ExcessHet=3.9794;FS=18.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.54;ReadPosRankSum=0.318;SOR=5.235;VQSLOD=9.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:451,0,246
chr1	117509981	rs12410651	G	A	1881.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=78;ExcessHet=3.9794;FS=3.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-1.460e-01;SOR=1.027;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,28:78:99:0|1:117509981_G_A:1001,0,2418:117509981
chr1	117509987	rs12403233	C	T	1827.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416e+00;DB;DP=75;ExcessHet=3.9794;FS=2.526;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-3.200e-02;SOR=0.988;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,27:75:99:0|1:117509981_G_A:1005,0,2396:117509981
chr1	117510061	rs12403245	C	T	565.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=41;ExcessHet=3.9794;FS=4.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=0.855;SOR=1.414;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,13:41:99:319,0,905
chr1	117527645	rs36119404	GTCT	G	3541.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980e-01;DB;DP=45;ExcessHet=1.5490;FS=4.077;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.73;ReadPosRankSum=-7.040e-01;SOR=0.316;VQSLOD=6.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,23:45:99:900,0,992
chr1	117529458	rs10801922	G	A	7200.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=190;ExcessHet=3.9794;FS=2.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=-4.680e-01;SOR=0.494;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,75:190:99:1620,0,2874
chr1	117529859	.	AT	A	96.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=0.842;SOR=0.446;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:43:43,0,104
chr1	117555898	rs2764849	G	A	2048.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.31;SOR=2.303;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:442,42,0
chr1	117559726	rs2249265	A	G	9498.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=0.957;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3034,306,0
chr1	117602960	rs2244501	C	A	6360.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.438;DB;DP=119;ExcessHet=3.9794;FS=4.073;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=1.39;SOR=0.955;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3588,351,0
chr1	117603188	rs2244406	G	T	1765.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322e+00;DB;DP=50;ExcessHet=3.9794;FS=3.880;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=-3.660e-01;SOR=1.311;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,27:50:99:875,0,712
chr1	117616648	rs3767770	A	G	301.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=0.00;SOR=0.804;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:68,0,30
chr1	117617705	rs998532	A	G	631.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=40;ExcessHet=3.0103;FS=4.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-2.652e+00;SOR=1.238;VQSLOD=22.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,22:40:99:640,0,491
chr1	117618067	rs1289673	C	T	594.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DB;DP=66;ExcessHet=3.0103;FS=2.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=-4.530e-01;SOR=0.408;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,26:66:99:603,0,1027
chr1	117618722	rs1289672	T	C	2557.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.56;SOR=1.949;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:661,57,0
chr1	117621947	rs55757120	G	C	832.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=-7.120e-01;SOR=0.509;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:68:190,0,68
chr1	117622286	rs2801939	A	G	629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-1.673e+00;SOR=0.654;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,25:59:99:638,0,857
chr1	117624858	rs5777297	CAG	C	63.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.431;SOR=0.223;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:41:71,0,41
chr1	117626945	rs2764856	G	C	405.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=4.977;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr1	117631391	rs1555792	T	C	3943.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.960e-01;DB;DP=44;ExcessHet=3.0103;FS=2.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=0.00;SOR=1.079;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1462,132,0
chr1	117633605	rs1289669	T	C	146.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.93;SOR=3.258;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	117660608	rs1289655	C	T	2679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.387;DB;DP=26;ExcessHet=3.0103;FS=7.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=-4.360e-01;SOR=2.269;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1024,78,0
chr1	117663913	rs3795655	C	T	961.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.083e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.86;ReadPosRankSum=1.54;SOR=0.663;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:44:531,44,0
chr1	117664046	rs6657335	C	T	131.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	117690272	rs10754339	G	A	2740.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=2.476;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:808,80,0
chr1	117696083	.	AT	A	1174.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DP=46;ExcessHet=6.9897;FS=1.350;MQ=59.87;MQRankSum=0.00;QD=8.33;ReadPosRankSum=0.363;SOR=0.566;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,17:46:99:366,0,187
chr1	117699714	rs367840356	GAT	G	82.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.34;ReadPosRankSum=0.282;SOR=0.223;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:58:59,0,58
chr1	117715026	rs6657810	C	T	3418.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=74;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.559;SOR=0.655;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2372,222,0
chr1	117715987	rs140251705	A	AAC	721.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=7;ExcessHet=3.9794;FS=5.698;MQ=60.00;MQRankSum=0.00;QD=24.86;ReadPosRankSum=-1.169e+00;SOR=2.391;VQSLOD=4.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:13:156,0,13
chr1	117910682	rs1146297	G	A	476.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=0.967;SOR=1.493;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:78,0,32
chr1	117957288	rs1289948	A	G	1300.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=15;ExcessHet=6.9897;FS=3.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=1.61;SOR=0.212;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:220,0,206
chr1	117984776	rs2306444	A	T	479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=15;ExcessHet=3.9794;FS=6.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.803;SOR=2.964;VQSLOD=17.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:326,0,133
chr1	118039722	rs7553018	C	T	209.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-1.001e+00;SOR=1.270;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,79
chr1	118045891	rs975128	G	A	896.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.53;SOR=6.273;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:360,27,0
chr1	118053126	rs41506254	T	C	1507.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e+00;DB;DP=128;ExcessHet=3.0103;FS=1.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-8.740e-01;SOR=0.852;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,72:128:99:1516,0,1213
chr1	118065284	rs34350477	C	G	185.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=-1.000e-01;SOR=0.693;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:194,0,147
chr1	118065841	rs1290558	A	G	3569.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DB;DP=86;ExcessHet=6.9897;FS=4.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=0.874;SOR=0.499;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1183,0,1017
chr1	118320644	rs1780028	A	G	66.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=55.23;POSITIVE_TRAIN_SITE;QD=33.48;SOR=2.303;VQSLOD=4.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	118320859	rs1775749	T	A	1922.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=47.32;POSITIVE_TRAIN_SITE;QD=32.04;SOR=1.255;VQSLOD=-1.200e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:455,45,0
chr1	118321119	rs114485606	T	C	3213.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.667;DB;DP=42;ExcessHet=3.0103;FS=3.701;MQ=56.26;MQRankSum=-7.340e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=-4.090e-01;SOR=0.787;VQSLOD=-4.992e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1213,126,0
chr1	118484265	rs10733098	G	A	7150.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=1.380;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1931,174,0
chr1	118526592	rs4347199	G	A	2033.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-2.060e-01;SOR=0.589;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:198,0,326
chr1	118535521	.	T	C	32.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.74;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:40,0,31
chr1	118550764	.	C	A	836.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DP=92;ExcessHet=3.0103;FS=5.489;MQ=60.00;MQRankSum=0.00;QD=9.09;ReadPosRankSum=-2.047e+00;SOR=0.317;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,39:92:99:845,0,1343
chr1	118568069	rs376669390	C	T	169.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.09;ReadPosRankSum=-1.204e+00;SOR=0.976;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:178,0,232
chr1	118579224	rs35746934	G	GAC	710.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=6.9897;FS=1.944;MQ=59.96;MQRankSum=0.00;QD=14.79;ReadPosRankSum=-1.369e+00;SOR=1.556;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:13:180,0,13
chr1	118617372	rs35046761	G	A	1482.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=49;ExcessHet=3.9794;FS=0.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=0.500;SOR=0.569;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,24:49:99:630,0,692
chr1	118623681	.	T	TAC	1084.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.170e-01;DP=8;ExcessHet=6.9897;FS=5.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.467;SOR=0.092;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:100,0,104
chr1	118629125	rs2798150	T	C	1075.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.90;SOR=6.736;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:284,21,0
chr1	118693217	rs1935992	T	C	2492.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.311e+00;DB;DP=53;ExcessHet=1.5490;FS=3.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=1.17;SOR=0.504;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1613,159,0
chr1	119466275	rs4659129	A	G	1374.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.820e-01;DB;DP=26;ExcessHet=6.9897;FS=3.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.57;ReadPosRankSum=0.702;SOR=0.411;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,20:26:99:581,0,103
chr1	119466374	rs1766793	G	T	361.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.13;ReadPosRankSum=0.619;SOR=1.473;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:59:224,0,59
chr1	119466439	rs1766794	A	G	140.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=3.258;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0
chr1	119467127	rs1779437	C	T	654.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.00;SOR=0.422;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:128,0,242
chr1	119584949	rs33960696	G	A	626.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=0.669;SOR=0.653;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,26:67:99:635,0,940
chr1	119923531	rs2224995	A	C	3093.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=70;ExcessHet=6.9897;FS=1.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.123;SOR=0.842;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,36:70:99:947,0,806
chr1	119923724	rs2275607	T	C	4105.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075e+00;DB;DP=108;ExcessHet=6.9897;FS=0.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-1.049e+00;SOR=0.620;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,56:108:99:1280,0,1182
chr1	119925403	rs1341007	C	T	1588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=48;ExcessHet=3.9794;FS=2.589;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-3.200e-01;SOR=1.005;VQSLOD=6.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,30:48:99:808,0,426
chr1	119925464	rs2298027	G	A	2142.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923e+00;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.810;SOR=0.666;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,35:65:99:927,0,857
chr1	119927680	rs6667679	A	G	3854.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=87;ExcessHet=6.9897;FS=7.230;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.044;SOR=1.057;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,54:87:99:1472,0,751
chr1	119927969	rs6670497	T	G	403.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=-2.530e-01;SOR=0.368;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:58:116,0,58
chr1	119935507	rs10802092	A	T	502.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.24;ReadPosRankSum=0.439;SOR=0.536;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:84:84,0,278
chr1	119936263	rs3765949	G	A	1810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=38;ExcessHet=6.9897;FS=9.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.355;SOR=1.462;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:528,0,473
chr1	120050463	rs2236780	A	G	720.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=0.817;SOR=1.002;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:72,0,70
chr1	120057158	rs6203	C	T	7452.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DB;DP=195;ExcessHet=6.9897;FS=1.843;MQ=59.28;MQRankSum=0.477;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.232;SOR=0.861;VQSLOD=0.924;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:108,87:195:99:2211,0,2863
chr1	120057246	rs1047303	C	A	2774.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.237e+00;DB;DP=49;ExcessHet=6.9897;FS=5.920;MQ=57.54;MQRankSum=0.608;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=-8.950e-01;SOR=1.867;VQSLOD=0.306;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:845,0,884
chr1	120165826	rs12076924	C	T	18563.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=274;ExcessHet=3.9794;FS=1.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=1.94;SOR=0.889;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,132:274:99:3450,0,3721
chr1	120166453	rs76236163	G	C	1144.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.30;ReadPosRankSum=-8.000e-01;SOR=0.666;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,45:93:99:1153,0,1141
chr1	120166934	rs12064265	T	C	557.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=0.00;SOR=0.627;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:75:147,0,75
chr1	120166988	rs57826447	TA	T	242.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=-5.240e-01;SOR=1.402;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:120166988_TA_T:75,0,173:120166988
chr1	120166992	rs58458537	T	TA	242.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=-5.240e-01;SOR=1.402;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:120166988_TA_T:75,0,173:120166988
chr1	120167000	rs61212565	AGGCAC	A	242.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.56;ReadPosRankSum=0.319;SOR=1.179;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,1:4:75:0|1:120166988_TA_T:75,0,173:120166988
chr1	120254545	rs562038	G	C	1134.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.000e-03;DB;DP=14;ExcessHet=3.9794;FS=1.075;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=0.367;SOR=0.465;VQSLOD=5.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:284,0,179
chr1	120263657	rs894079	A	G	2355.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=43;ExcessHet=6.9897;FS=1.488;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=7.000e-03;SOR=0.514;VQSLOD=6.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,27:43:99:867,0,385
chr1	120267282	.	AT	A	170.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=14;ExcessHet=3.9794;FS=1.631;MQ=59.89;MQRankSum=0.00;QD=6.56;ReadPosRankSum=0.549;SOR=1.055;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:14:82:82,0,143
chr1	120267505	rs483180	C	G	1263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680e-01;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=-8.910e-01;SOR=0.743;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,23:71:99:537,0,1358
chr1	120267544	rs1886736	C	T	3041.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.430e-01;DB;DP=54;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-8.300e-01;SOR=0.680;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,37:54:99:1017,0,438
chr1	120267597	rs3838425	GC	G	3327.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.380e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=-1.390e-01;SOR=0.830;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1273,102,0
chr1	120269567	rs2236398	G	C	8590.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DB;DP=134;ExcessHet=3.9794;FS=0.567;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=1.01;SOR=0.752;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,75:134:99:1875,0,1550
chr1	120283249	rs610404	A	G	634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=1.33;SOR=0.824;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:237,0,400
chr1	120284669	rs627070	A	T	462.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=1.29;SOR=1.609;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:84:297,0,84
chr1	120285546	rs543703	G	A	2081.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=81;ExcessHet=3.9794;FS=11.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=1.36;SOR=0.258;VQSLOD=17.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,45:81:99:1241,0,912
chr1	120293367	rs667246	T	C	2548.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DB;DP=118;ExcessHet=3.9794;FS=4.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-8.380e-01;SOR=1.014;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,57:118:99:1410,0,1427
chr1	120293748	rs566864	T	G	326.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.298;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:147,0,157
chr1	120336785	rs1052972	C	T	2499.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438e+00;DB;DP=60;ExcessHet=1.5490;FS=0.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=-2.160e-01;SOR=0.586;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,34:60:99:831,0,707
chr1	120336876	rs699778	T	G	2839.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=58;ExcessHet=1.5490;FS=0.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=-2.300e-02;SOR=0.882;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,31:58:99:856,0,695
chr1	120337384	rs947270	T	C	1121.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=19;ExcessHet=1.5490;FS=3.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=0.125;SOR=1.855;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:291,0,302
chr1	120337403	rs947271	A	G	953.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=0.949;SOR=1.209;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:121,0,212
chr1	120340918	rs1163541	G	A	2179.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.35;SOR=8.086;VQSLOD=24.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:631,48,0
chr1	120342167	rs2793836	T	C	166.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=1.96;SOR=0.223;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:75,0,33
chr1	120378678	rs3009182	C	T	5476.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.695e+00;DB;DP=115;ExcessHet=1.5490;FS=13.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=0.574;SOR=1.065;VQSLOD=16.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,57:115:99:1264,0,1462
chr1	120380008	rs3009184	T	A	1812.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461e+00;DB;DP=44;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.305;SOR=0.768;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:390,0,840
chr1	120381686	rs5777416	G	GT	4238.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.53;ReadPosRankSum=1.14;SOR=0.493;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:99:1|1:120381686_G_GT:1524,102,0:120381686
chr1	120381687	rs34302627	G	GTGAGTCAC	4238.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.95;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.89;ReadPosRankSum=1.16;SOR=0.521;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:99:1|1:120381686_G_GT:1524,102,0:120381686
chr1	120382121	rs2226084	C	T	1451.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=1.78;SOR=2.560;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:153,0,385
chr1	120384205	rs2994820	A	G	5304.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=105;ExcessHet=1.5490;FS=0.624;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=0.420;SOR=0.632;VQSLOD=6.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,51:105:99:1361,0,1435
chr1	120384777	rs2994821	G	T	489.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=58.95;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=0.816;SOR=1.493;VQSLOD=0.170;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:120384777_G_T:150,0,476:120384777
chr1	120384785	rs2994822	C	A	561.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=59.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=0.198;SOR=1.609;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:120384777_G_T:150,0,476:120384777
chr1	120386825	.	A	G	83.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.897e+00;DP=58;ExcessHet=3.0103;FS=9.236;MQ=58.93;MQRankSum=-7.513e+00;QD=1.44;ReadPosRankSum=-1.303e+00;SOR=0.063;VQSLOD=-4.610e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,6:58:92:0|1:120386825_A_G:92,0,2957:120386825
chr1	120390071	rs3009191	T	C	858.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=24;ExcessHet=3.9794;FS=1.184;MQ=58.31;MQRankSum=0.00;QD=18.27;ReadPosRankSum=0.746;SOR=1.004;VQSLOD=-9.101e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:358,0,168
chr1	120437718	rs2793823	G	A	6711.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DB;DP=147;ExcessHet=6.9897;FS=1.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.105;SOR=0.609;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,78:147:99:1935,0,1725
chr1	120437884	rs2641348	A	G	3716.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DB;DP=115;ExcessHet=3.9794;FS=1.526;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.331;SOR=0.579;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,52:115:99:1405,0,1683
chr1	120458004	rs6685892	A	T	2603.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=103;ExcessHet=3.9794;FS=2.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.020;SOR=0.511;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,56:103:99:1562,0,1196
chr1	120459433	rs41277624	G	A	326.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-01;DB;DP=23;ExcessHet=3.0103;FS=3.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-2.480e-01;SOR=2.147;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:335,0,406
chr1	120461253	rs2793829	C	T	845.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.359e+00;DB;DP=20;ExcessHet=3.9794;FS=1.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=0.268;SOR=0.330;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:366,0,256
chr1	120463230	rs835574	C	T	499.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-7.000e-01;SOR=0.826;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:108,0,155
chr1	120464165	rs835573	C	T	1644.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=32;ExcessHet=6.9897;FS=2.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.494;SOR=0.428;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:499,0,423
chr1	120466108	rs2793830	G	A	966.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=16;ExcessHet=6.9897;FS=4.502;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.106;SOR=0.123;VQSLOD=6.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:322,0,159
chr1	120471424	rs2493393	C	T	1440.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=2.303;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:38:437,38,0
chr1	120471857	rs2493392	C	T	2146.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=103;ExcessHet=3.9794;FS=6.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-1.101e+00;SOR=1.146;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,50:103:99:1164,0,1328
chr1	120477998	rs2453056	C	A	2690.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007e+00;DB;DP=68;ExcessHet=6.9897;FS=1.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-1.351e+00;SOR=0.601;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,27:68:99:702,0,1128
chr1	120478285	rs5025718	T	C	1666.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540e+00;DB;DP=27;ExcessHet=6.9897;FS=4.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.00;SOR=1.157;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:281,0,474
chr1	120480394	rs2453057	T	C	1037.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.94;SOR=1.863;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:372,30,0
chr1	120480709	rs2453058	C	T	413.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=1.49;SOR=1.085;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:64:156,0,64
chr1	120484421	rs2493420	G	A	1111.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=32;ExcessHet=6.9897;FS=5.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.150e-01;SOR=1.417;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:473,0,409
chr1	120495934	rs2453055	G	C	245.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=8;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.32;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:120495934_G_C:154,0,211:120495934
chr1	120495936	rs10695258	C	CAA	236.47	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=0.319;SOR=0.293;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:120495934_G_C:154,0,211:120495934
chr1	120496119	rs7534585	A	T	2343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.440e-01;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=0.598;SOR=0.686;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,29:73:99:0|1:120496119_A_T:1111,0,2748:120496119
chr1	120496127	rs7534586	A	C	2365.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=82;ExcessHet=3.9794;FS=2.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.061;SOR=0.502;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,33:82:99:0|1:120496119_A_T:1145,0,2847:120496119
chr1	120498086	rs4659250	G	C	181.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:119,0,29
chr1	120505996	rs10923929	G	C	1610.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333e+00;DB;DP=24;ExcessHet=6.9897;FS=6.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=-8.790e-01;SOR=1.536;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:491,0,252
chr1	120506108	rs2934381	G	A	1957.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053e+00;DB;DP=74;ExcessHet=3.9794;FS=5.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.208;SOR=1.160;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,31:74:99:708,0,1275
chr1	120508803	rs2493410	T	C	94.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.51;ReadPosRankSum=1.15;SOR=0.495;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:72,0,31
chr1	120512104	rs2493409	T	C	7034.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=32.35;SOR=4.724;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1953,156,0
chr1	120529750	rs2453040	A	C	662.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310e-01;DB;DP=40;ExcessHet=3.9794;FS=3.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=1.48;SOR=0.357;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,26:40:99:599,0,334
chr1	120539331	rs2124109	C	T	6137.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=261;ExcessHet=6.9897;FS=0.000;MQ=58.69;MQRankSum=-5.283e+00;QD=7.79;ReadPosRankSum=1.08;SOR=0.706;VQSLOD=-2.968e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:209,52:261:99:863,0,5575
chr1	120572806	rs4659262	G	A	784.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=52.25;MQRankSum=0.545;NEGATIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-2.450e-01;SOR=0.776;VQSLOD=-2.930e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:212,0,243
chr1	120611498	rs2489097	G	C	3462.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=233;ExcessHet=6.9897;FS=8.352;MQ=44.80;MQRankSum=-5.172e+00;QD=5.15;ReadPosRankSum=-1.485e+00;SOR=0.281;VQSLOD=-3.970e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:186,47:233:99:1026,0,7501
chr1	120611715	rs2794167	A	G	17229.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.16;DB;DP=377;ExcessHet=6.9897;FS=4.530;MQ=51.06;MQRankSum=-7.843e+00;QD=15.88;ReadPosRankSum=-1.699e+00;SOR=1.052;VQSLOD=-3.762e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,272:377:99:7650,0,2187
chr1	120611758	rs61790276	G	A	7624.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=248;ExcessHet=6.9897;FS=1.867;MQ=56.93;MQRankSum=-2.500e-01;NEGATIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.23;SOR=0.579;VQSLOD=-2.351e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,111:248:99:2971,0,3758
chr1	120611830	rs61790277	G	A	6826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=201;ExcessHet=6.9897;FS=0.000;MQ=52.01;MQRankSum=-2.429e+00;NEGATIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-2.700e-02;SOR=0.691;VQSLOD=-3.161e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,80:201:99:2287,0,3439
chr1	120611876	rs11801062	C	T	7370.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=238;ExcessHet=6.9897;FS=0.537;MQ=48.38;MQRankSum=-6.288e+00;QD=11.19;ReadPosRankSum=1.36;SOR=0.746;VQSLOD=-4.825e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,94:238:99:2668,0,3745
chr1	120611964	rs11810554	G	C	7852.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=372;ExcessHet=6.9897;FS=4.362;MQ=53.95;MQRankSum=-1.165e+00;NEGATIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=1.15;SOR=0.580;VQSLOD=-2.234e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:240,132:372:99:2954,0,6376
chr1	120612006	rs4021006	G	A	12977.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.190e-01;DB;DP=362;ExcessHet=6.9897;FS=8.105;MQ=54.92;MQRankSum=-9.190e-01;NEGATIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-1.028e+00;SOR=0.951;VQSLOD=-1.655e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:250,112:362:99:2099,0,6564
chr1	120612163	rs55899574	C	A	4704.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.684e+00;DB;DP=229;ExcessHet=6.9897;FS=0.646;MQ=53.32;MQRankSum=-6.435e+00;QD=7.59;ReadPosRankSum=0.851;SOR=0.620;VQSLOD=-5.253e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:182,47:229:99:0|1:120612154_C_G:1354,0,7535:120612154
chr1	120612168	rs11801102	C	T	2475.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870e-01;DB;DP=222;ExcessHet=6.9897;FS=2.242;MQ=53.45;MQRankSum=-2.845e+00;NEGATIVE_TRAIN_SITE;QD=4.05;ReadPosRankSum=-1.320e-01;SOR=0.968;VQSLOD=-3.508e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:163,59:222:99:1067,0,5176
chr1	120612269	.	A	G	410.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166e+00;DP=68;ExcessHet=3.9794;FS=0.940;MQ=48.48;MQRankSum=-3.211e+00;QD=2.55;ReadPosRankSum=-1.427e+00;SOR=0.848;VQSLOD=-4.263e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,11:68:99:140,0,2336
chr1	120612297	rs138452656	C	A	777.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.970e-01;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=46.39;MQRankSum=2.12;QD=13.63;ReadPosRankSum=0.920;SOR=0.737;VQSLOD=-4.255e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:439,0,567
chr1	120904830	rs61804021	C	T	6463.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=111;ExcessHet=1.5490;FS=1.950;MQ=43.28;MQRankSum=0.479;POSITIVE_TRAIN_SITE;QD=27.16;ReadPosRankSum=0.317;SOR=0.742;VQSLOD=-3.385e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,60:111:99:1806,0,1454
chr1	120905120	rs61804022	A	C	6423.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.88;DB;DP=133;ExcessHet=1.5490;FS=12.356;MQ=46.89;MQRankSum=-1.982e+00;QD=24.80;ReadPosRankSum=0.325;SOR=1.536;VQSLOD=-3.979e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,50:133:99:1516,0,2336
chr1	120906101	rs114418656	C	A	13065.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=246;ExcessHet=1.5490;FS=0.000;MQ=53.77;MQRankSum=-2.661e+00;NEGATIVE_TRAIN_SITE;QD=29.43;ReadPosRankSum=-1.433e+00;SOR=0.742;VQSLOD=-2.793e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:131,115:246:99:0|1:120906101_C_A:4304,0,6662:120906101
chr1	120906102	rs115198068	G	A	13065.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DB;DP=247;ExcessHet=1.5490;FS=0.000;MQ=53.77;MQRankSum=-2.658e+00;NEGATIVE_TRAIN_SITE;QD=29.36;ReadPosRankSum=-1.528e+00;SOR=0.747;VQSLOD=-2.817e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:131,116:247:99:0|1:120906101_C_A:4304,0,6662:120906101
chr1	120925663	rs827373	C	T	2915.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=44.21;QD=31.35;SOR=1.240;VQSLOD=-4.036e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1087,102,0
chr1	120927081	rs76856338	C	T	486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=42.41;MQRankSum=0.562;QD=12.46;ReadPosRankSum=-8.490e-01;SOR=0.906;VQSLOD=-5.089e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:208,0,342
chr1	120927095	rs200417312	G	A	75.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.370e-01;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=42.60;MQRankSum=-9.230e-01;QD=1.75;ReadPosRankSum=0.469;SOR=0.495;VQSLOD=-4.791e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,4:22:77:77,0,564
chr1	120935661	rs56158134	T	C	353.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=34.92;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.802;VQSLOD=-4.909e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:60,6,0
chr1	121115761	rs150166046	T	G	1516.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.71;DB;DP=61;ExcessHet=6.9897;FS=1.324;MQ=40.56;MQRankSum=-1.727e+00;QD=6.60;ReadPosRankSum=0.451;SOR=1.061;VQSLOD=-5.026e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,17:61:99:375,0,1574
chr1	121116121	rs201302047	T	C	368.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=42.85;MQRankSum=-1.294e+00;QD=7.09;ReadPosRankSum=1.63;SOR=0.484;VQSLOD=-4.455e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:99:102,0,231
chr1	121116678	rs61806689	C	T	3236.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=141;ExcessHet=3.9794;FS=7.170;MQ=54.57;MQRankSum=4.08;NEGATIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-6.320e-01;SOR=1.114;VQSLOD=-1.879e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,38:141:99:803,0,4022
chr1	121116688	rs61806690	A	G	5177.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.85;DB;DP=140;ExcessHet=3.9794;FS=6.735;MQ=54.09;MQRankSum=2.71;NEGATIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-1.332e+00;SOR=1.085;VQSLOD=-1.936e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,42:140:99:1362,0,2547
chr1	121116733	rs61806691	A	G	780.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.857e+00;DB;DP=166;ExcessHet=3.9794;FS=18.059;MQ=54.81;MQRankSum=-4.356e+00;NEGATIVE_TRAIN_SITE;QD=2.45;ReadPosRankSum=1.07;SOR=1.109;VQSLOD=-4.599e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:131,35:166:99:452,0,3692
chr1	121116933	rs79097880	T	C	2724.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=59;ExcessHet=1.5490;FS=7.012;MQ=56.67;MQRankSum=-4.130e+00;NEGATIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=-7.810e-01;SOR=1.557;VQSLOD=-1.538e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,30:59:99:856,0,752
chr1	121116953	rs78187610	A	G	1782.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.040e-01;DB;DP=39;ExcessHet=1.5490;FS=10.144;MQ=54.61;MQRankSum=-4.376e+00;NEGATIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=-4.360e-01;SOR=2.599;VQSLOD=-2.395e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:567,0,591
chr1	142542830	rs7514240	C	T	3338.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=93;ExcessHet=6.9897;FS=10.395;MQ=50.38;MQRankSum=-6.347e+00;QD=11.67;ReadPosRankSum=0.502;SOR=1.208;VQSLOD=-3.856e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,42:93:99:983,0,1209
chr1	142542921	rs7555663	A	G	6609.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=91;ExcessHet=6.9897;FS=5.218;MQ=53.83;MQRankSum=-6.263e+00;QD=21.46;ReadPosRankSum=-1.410e+00;SOR=0.472;VQSLOD=-2.421e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,44:91:99:0|1:142542921_A_G:1703,0,1790:142542921
chr1	142542922	rs7521801	G	A	6810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DB;DP=90;ExcessHet=6.9897;FS=6.029;MQ=53.80;MQRankSum=-6.226e+00;QD=21.83;ReadPosRankSum=-1.164e+00;SOR=0.460;VQSLOD=-2.148e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,44:90:99:0|1:142542921_A_G:1703,0,1790:142542921
chr1	142542976	rs7545982	T	G	4811.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.00;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=56.31;MQRankSum=-2.255e+00;NEGATIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=1.90;SOR=0.753;VQSLOD=-2.860e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1866,181,0
chr1	142543030	rs7521909	G	A	2214.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.455e+00;DB;DP=33;ExcessHet=6.9897;FS=1.796;MQ=57.95;MQRankSum=-1.061e+00;QD=21.09;ReadPosRankSum=0.283;SOR=0.359;VQSLOD=-1.100e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,24:33:99:776,0,288
chr1	142543076	rs4329529	A	G	1093.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=56.63;MQRankSum=-7.360e-01;NEGATIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=-1.011e+00;SOR=1.662;VQSLOD=-1.426e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:398,0,119
chr1	142667202	rs3896987	T	C	38.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=11;ExcessHet=3.0103;FS=8.195;MQ=55.78;MQRankSum=-2.744e+00;NEGATIVE_TRAIN_SITE;QD=3.50;ReadPosRankSum=-1.723e+00;SOR=0.838;VQSLOD=-2.516e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:46:46,0,228
chr1	142667306	rs10430152	C	T	659.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222e+00;DB;DP=38;ExcessHet=6.9897;FS=0.850;MQ=55.26;MQRankSum=0.269;NEGATIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=0.738;SOR=0.850;VQSLOD=-3.082e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:467,0,497
chr1	142667399	rs10430153	A	G	547.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=58.31;MQRankSum=0.580;QD=8.30;ReadPosRankSum=0.444;SOR=0.701;VQSLOD=-9.260e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,19:36:99:438,0,389
chr1	142667504	rs2571558	A	G	118.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=58.45;MQRankSum=0.00;QD=10.76;ReadPosRankSum=1.38;SOR=0.330;VQSLOD=-9.945e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:52:52,0,177
chr1	142667521	rs7416687	T	A	133.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=57.86;MQRankSum=0.00;QD=16.73;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=-1.020e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,71
chr1	142713152	rs142135372	T	G	3018.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.680e-01;DB;DP=67;ExcessHet=1.5490;FS=0.000;MQ=50.35;MQRankSum=-1.010e-01;NEGATIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=-1.150e-01;SOR=0.685;VQSLOD=-2.950e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2182,201,0
chr1	142813414	.	T	G	272.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716e+00;DP=35;ExcessHet=3.9794;FS=0.000;MQ=55.76;MQRankSum=1.07;NEGATIVE_TRAIN_SITE;QD=3.44;ReadPosRankSum=0.340;SOR=0.349;VQSLOD=-3.236e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,9:35:99:1|0:142813404_A_T:251,0,851:142813404
chr1	142824866	rs143643176	C	T	565.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126e+00;DB;DP=6;ExcessHet=6.9897;FS=3.078;MQ=39.84;MQRankSum=0.00;QD=14.15;ReadPosRankSum=-8.420e-01;SOR=2.124;VQSLOD=-5.175e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:125,0,65
chr1	142824908	rs144017068	T	C	1182.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DB;DP=14;ExcessHet=6.9897;FS=1.457;MQ=44.30;MQRankSum=0.574;QD=14.79;ReadPosRankSum=-7.020e-01;SOR=1.105;VQSLOD=-4.430e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:276,0,119
chr1	142825124	rs140369799	T	C	1851.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=39;ExcessHet=6.9897;FS=2.316;MQ=56.34;MQRankSum=-3.030e-01;NEGATIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.096;SOR=0.924;VQSLOD=-2.625e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,11:39:99:1|0:142825121_C_A:193,0,761:142825121
chr1	142826166	rs369175438	C	T	198.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=44.26;MQRankSum=-2.036e+00;QD=1.91;ReadPosRankSum=1.29;SOR=0.845;VQSLOD=-4.526e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,6:27:99:132,0,744
chr1	142826355	rs144200029	CA	C	1677.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=229;ExcessHet=3.9794;FS=0.711;MQ=49.22;MQRankSum=-1.919e+00;QD=3.47;ReadPosRankSum=0.489;SOR=0.541;VQSLOD=0.230;culprit=QD	GT:AD:DP:GQ:PL	0/1:184,45:229:99:994,0,6526
chr1	142826454	rs371347440	A	G	839.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e-01;DB;DP=165;ExcessHet=3.9794;FS=7.202;MQ=43.54;MQRankSum=-1.221e+00;QD=2.31;ReadPosRankSum=-5.120e-01;SOR=1.187;VQSLOD=-4.064e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:136,29:165:99:0|1:142826454_A_G:435,0,3943:142826454
chr1	142826589	rs147993279	T	C	1471.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.97;DB;DP=26;ExcessHet=6.9897;FS=6.589;MQ=41.55;MQRankSum=-3.767e+00;QD=10.67;ReadPosRankSum=-5.200e-02;SOR=1.262;VQSLOD=-4.577e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,11:26:99:0|1:142826454_A_G:259,0,392:142826454
chr1	142826652	rs74960861	C	G	1775.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739e+00;DB;DP=64;ExcessHet=6.9897;FS=0.486;MQ=45.06;MQRankSum=-2.914e+00;QD=6.60;ReadPosRankSum=-1.416e+00;SOR=0.759;VQSLOD=-4.405e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,22:64:99:0|1:142826454_A_G:515,0,1094:142826454
chr1	143163606	.	C	T	82.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=6;ExcessHet=3.0103;FS=0.000;MQ=48.10;MQRankSum=-3.850e-01;QD=13.71;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=-3.595e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:91:91,0,91
chr1	143163656	rs78784959	G	A	98.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.450e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=50.21;MQRankSum=-6.750e-01;NEGATIVE_TRAIN_SITE;QD=3.79;ReadPosRankSum=1.30;SOR=0.576;VQSLOD=-3.639e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:50:50,0,400
chr1	143163673	rs75168327	C	G	78.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-02;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=49.21;MQRankSum=-3.680e-01;QD=2.52;ReadPosRankSum=2.12;SOR=0.854;VQSLOD=-3.917e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,3:18:40:40,0,418
chr1	143163706	rs75829684	A	T	101.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=49.95;MQRankSum=-6.400e-01;NEGATIVE_TRAIN_SITE;QD=2.41;ReadPosRankSum=0.847;SOR=0.914;VQSLOD=-3.649e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,3:22:40:0|1:143163706_A_T:40,0,827:143163706
chr1	143163708	rs79090643	C	T	101.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=50.08;MQRankSum=-5.620e-01;NEGATIVE_TRAIN_SITE;QD=2.30;ReadPosRankSum=0.959;SOR=0.831;VQSLOD=-3.690e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,3:23:40:0|1:143163706_A_T:40,0,827:143163706
chr1	143163731	rs61786893	C	A	213.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=38;ExcessHet=3.9794;FS=1.080;MQ=46.69;MQRankSum=-1.433e+00;QD=3.44;ReadPosRankSum=0.418;SOR=0.540;VQSLOD=-4.030e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,7:38:66:66,0,893
chr1	143163749	rs61786894	A	C	1210.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911e+00;DB;DP=39;ExcessHet=6.9897;FS=2.816;MQ=49.24;MQRankSum=-4.577e+00;QD=13.61;ReadPosRankSum=-1.078e+00;SOR=0.419;VQSLOD=-3.290e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,25:39:99:711,0,354
chr1	143163772	rs78472851	G	C	88.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=37;ExcessHet=3.0103;FS=13.398;MQ=50.87;MQRankSum=-1.429e+00;NEGATIVE_TRAIN_SITE;QD=2.40;ReadPosRankSum=0.044;SOR=2.550;VQSLOD=-4.835e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,5:37:97:0|1:143163772_G_C:97,0,1362:143163772
chr1	143163775	rs76191636	A	G	88.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;DB;DP=39;ExcessHet=3.0103;FS=13.341;MQ=50.75;MQRankSum=-1.397e+00;NEGATIVE_TRAIN_SITE;QD=2.28;ReadPosRankSum=0.273;SOR=2.551;VQSLOD=-4.848e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,5:39:97:0|1:143163772_G_C:97,0,1362:143163772
chr1	143163790	rs79594127	T	C	93.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=35;ExcessHet=3.9794;FS=1.505;MQ=50.69;MQRankSum=-1.328e+00;NEGATIVE_TRAIN_SITE;QD=1.53;ReadPosRankSum=1.32;SOR=0.888;VQSLOD=-3.801e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,4:35:74:74,0,848
chr1	143163799	rs61786895	G	A	150.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;DB;DP=34;ExcessHet=3.9794;FS=2.720;MQ=47.96;MQRankSum=-2.168e+00;QD=2.18;ReadPosRankSum=0.401;SOR=1.292;VQSLOD=-3.377e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,4:34:20:20,0,824
chr1	143163816	rs75563322	G	A	454.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.840e-01;DB;DP=34;ExcessHet=6.9897;FS=1.905;MQ=50.70;MQRankSum=-2.743e+00;NEGATIVE_TRAIN_SITE;QD=4.74;ReadPosRankSum=0.980;SOR=0.473;VQSLOD=-3.673e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:219,0,621
chr1	143163914	rs79452773	T	A	307.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=8;ExcessHet=6.9897;FS=1.939;MQ=54.07;MQRankSum=-2.572e+00;NEGATIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-3.120e-01;SOR=1.524;VQSLOD=-2.343e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:143163914_T_A:66,0,397:143163914
chr1	143163915	rs74366730	G	C	383.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=6.9897;FS=1.939;MQ=54.07;MQRankSum=-2.572e+00;NEGATIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-3.150e-01;SOR=1.524;VQSLOD=-2.268e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:143163914_T_A:66,0,397:143163914
chr1	143187023	rs111728218	CTG	C	46.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=49.63;MQRankSum=0.967;QD=15.36;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=0.389;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:36:0|1:143187023_CTG_C:52,0,36:143187023
chr1	143187486	rs201168931	C	T	60.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=10;ExcessHet=3.0103;FS=3.010;MQ=54.42;MQRankSum=-8.760e-01;NEGATIVE_TRAIN_SITE;QD=6.04;ReadPosRankSum=0.405;SOR=0.105;VQSLOD=-2.413e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:69:69,0,159
chr1	143210174	rs78780536	C	G	1208.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DB;DP=88;ExcessHet=6.9897;FS=11.964;MQ=48.98;MQRankSum=-3.269e+00;QD=3.81;ReadPosRankSum=0.279;SOR=0.680;VQSLOD=-3.603e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,18:88:99:245,0,2177
chr1	143210178	rs76689679	T	A	67.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e+00;DB;DP=90;ExcessHet=3.0103;FS=2.167;MQ=50.05;MQRankSum=-1.766e+00;NEGATIVE_TRAIN_SITE;QD=0.75;ReadPosRankSum=1.02;SOR=0.993;VQSLOD=-3.733e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,9:90:76:76,0,2727
chr1	143210199	rs374111110	T	C	65.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;DB;DP=92;ExcessHet=3.0103;FS=2.208;MQ=51.25;MQRankSum=-2.323e+00;NEGATIVE_TRAIN_SITE;QD=0.71;ReadPosRankSum=2.53;SOR=1.074;VQSLOD=-4.085e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,9:92:74:74,0,2543
chr1	143210222	rs61785385	A	G	502.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=82;ExcessHet=3.0103;FS=2.102;MQ=51.55;MQRankSum=3.11;NEGATIVE_TRAIN_SITE;QD=6.13;ReadPosRankSum=-1.225e+00;SOR=0.443;VQSLOD=-4.098e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,22:82:99:511,0,1721
chr1	143210241	rs377661991	A	C	104.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230e-01;DB;DP=81;ExcessHet=3.0103;FS=8.764;MQ=52.53;MQRankSum=-3.296e+00;NEGATIVE_TRAIN_SITE;QD=1.29;ReadPosRankSum=-3.090e-01;SOR=2.387;VQSLOD=-4.062e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,8:81:99:0|1:143210233_CT_C:113,0,3039:143210233
chr1	143210260	rs370549174	T	A	117.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=78;ExcessHet=3.0103;FS=8.820;MQ=52.67;MQRankSum=-3.387e+00;NEGATIVE_TRAIN_SITE;QD=1.50;ReadPosRankSum=-1.779e+00;SOR=2.419;VQSLOD=-4.323e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,8:78:99:126,0,2170
chr1	143210327	.	C	T	59.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.910e-01;DP=45;ExcessHet=3.9794;FS=0.000;MQ=56.71;MQRankSum=-5.434e+00;QD=0.57;ReadPosRankSum=-1.380e+00;SOR=0.498;VQSLOD=-4.541e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,4:45:18:18,0,1354
chr1	143210343	rs142396925	C	T	108.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=38;ExcessHet=6.9897;FS=5.805;MQ=57.12;MQRankSum=-6.487e+00;QD=0.80;ReadPosRankSum=-2.249e+00;SOR=1.532;VQSLOD=-4.442e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,3:38:9:9,0,969
chr1	143401063	rs61799775	T	G	415.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.52;DB;DP=20;ExcessHet=6.9897;FS=5.825;MQ=49.41;MQRankSum=-4.037e+00;NEGATIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=-7.020e-01;SOR=1.331;VQSLOD=-2.913e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:123,0,382
chr1	143424027	rs7411718	A	C	207.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=49.52;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=0.674;SOR=1.402;VQSLOD=-2.327e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:69,0,33
chr1	143465610	.	G	T	272.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923e+00;DP=16;ExcessHet=3.0103;FS=0.000;MQ=52.22;MQRankSum=-5.220e-01;NEGATIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=-1.197e+00;SOR=0.275;VQSLOD=-2.784e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:281,0,237
chr1	143767254	rs201606684	A	G	974.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=27;ExcessHet=6.9897;FS=2.608;MQ=43.00;MQRankSum=-1.317e+00;QD=10.48;ReadPosRankSum=-4.160e-01;SOR=1.636;VQSLOD=-3.659e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,6:27:99:149,0,737
chr1	143767513	rs6604511	A	T	7709.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092e+00;DB;DP=475;ExcessHet=6.9897;FS=3.296;MQ=52.44;MQRankSum=-7.380e-01;NEGATIVE_TRAIN_SITE;QD=4.65;ReadPosRankSum=0.850;SOR=1.000;VQSLOD=-2.829e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:324,151:475:99:0|1:143767513_A_T:5134,0,12938:143767513
chr1	143767522	rs6604512	A	G	11162.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.00;DB;DP=454;ExcessHet=6.9897;FS=1.310;MQ=51.85;MQRankSum=-9.470e-01;NEGATIVE_TRAIN_SITE;QD=6.99;ReadPosRankSum=2.18;SOR=0.809;VQSLOD=-3.572e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:315,139:454:99:0|1:143767513_A_T:4856,0,12806:143767513
chr1	143767547	rs2490183	G	A	5776.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.639e+00;DB;DP=429;ExcessHet=6.9897;FS=1.345;MQ=49.93;MQRankSum=-5.350e-01;NEGATIVE_TRAIN_SITE;QD=3.94;ReadPosRankSum=0.429;SOR=0.792;VQSLOD=-3.643e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:301,128:429:99:2402,0,8461
chr1	144013853	rs6600697	T	C	4763.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=173;ExcessHet=6.9897;FS=1.940;MQ=60.00;MQRankSum=0.00;QD=8.84;ReadPosRankSum=-2.000e-03;SOR=0.853;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,71:173:99:1723,0,2619
chr1	144013865	rs6600696	T	G	4716.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039e+00;DB;DP=196;ExcessHet=6.9897;FS=0.570;MQ=60.00;MQRankSum=0.00;QD=7.77;ReadPosRankSum=0.321;SOR=0.781;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,81:196:99:1809,0,3042
chr1	144014051	rs1884147	G	A	2414.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.480e-01;DB;DP=104;ExcessHet=6.9897;FS=1.458;MQ=60.00;MQRankSum=0.00;QD=6.04;ReadPosRankSum=0.092;SOR=0.781;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,12:104:99:109,0,2719
chr1	144014068	rs1884146	T	C	5677.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.364e+00;DB;DP=82;ExcessHet=6.9897;FS=0.485;MQ=60.00;MQRankSum=0.00;QD=18.08;ReadPosRankSum=-1.144e+00;SOR=0.734;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,43:82:99:1149,0,1064
chr1	144014234	rs6600695	A	G	595.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.28;ReadPosRankSum=0.489;SOR=0.557;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:16:252,0,16
chr1	144052641	.	CAAAA	C	1314.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DP=35;ExcessHet=6.9897;FS=10.234;MQ=57.86;MQRankSum=0.568;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=-1.070e+00;SOR=1.767;VQSLOD=0.195;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:35:99:531,0,590
chr1	144052974	rs201231755	G	A	529.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=46.22;MQRankSum=-2.200e+00;QD=23.04;ReadPosRankSum=-2.820e-01;SOR=1.426;VQSLOD=-2.823e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:95,0,68
chr1	144606628	.	T	C	225.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DP=8;ExcessHet=6.9897;FS=0.000;MQ=46.40;MQRankSum=-2.189e+00;QD=7.06;ReadPosRankSum=-5.540e-01;SOR=0.260;VQSLOD=-3.642e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:29:29,0,217
chr1	144615080	rs201657770	A	G	362.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=17;ExcessHet=1.5490;FS=6.455;MQ=40.05;MQRankSum=-2.764e+00;QD=14.52;ReadPosRankSum=0.341;SOR=0.124;VQSLOD=-3.788e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:82:82,0,379
chr1	144615102	rs201543878	A	G	376.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=31;ExcessHet=3.9794;FS=6.058;MQ=38.16;MQRankSum=-1.011e+00;QD=8.01;ReadPosRankSum=1.32;SOR=0.127;VQSLOD=-4.255e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,5:31:99:0|1:144615102_A_G:126,0,1310:144615102
chr1	144615104	rs199745076	T	C	376.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=33;ExcessHet=3.9794;FS=5.955;MQ=38.81;MQRankSum=-1.240e+00;QD=7.38;ReadPosRankSum=1.82;SOR=0.132;VQSLOD=-4.104e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,5:33:99:0|1:144615102_A_G:126,0,1310:144615102
chr1	144615138	rs9441132	T	G	561.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=57;ExcessHet=3.0103;FS=2.411;MQ=44.06;MQRankSum=-3.633e+00;QD=9.85;ReadPosRankSum=-2.864e+00;SOR=1.151;VQSLOD=-4.569e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:570,0,822
chr1	144617251	rs12057989	A	G	917.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.364e+00;DB;DP=91;ExcessHet=3.0103;FS=2.744;MQ=58.77;MQRankSum=-3.207e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=1.03;SOR=0.628;VQSLOD=-6.118e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,42:91:99:926,0,1432
chr1	144617992	rs146083536	T	A	3019.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=62;ExcessHet=6.9897;FS=15.608;MQ=53.12;MQRankSum=-7.231e+00;QD=13.30;ReadPosRankSum=-2.347e+00;SOR=1.762;VQSLOD=-4.995e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,23:62:99:0|1:144617992_T_A:1006,0,1807:144617992
chr1	144618000	.	G	A	887.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281e+00;DP=82;ExcessHet=6.9897;FS=4.960;MQ=52.86;MQRankSum=-4.801e+00;NEGATIVE_TRAIN_SITE;QD=3.14;ReadPosRankSum=-1.661e+00;SOR=1.122;VQSLOD=-3.237e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,14:82:99:126,0,2913
chr1	144619318	.	G	A	11003.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290e-01;DP=124;ExcessHet=1.5490;FS=0.000;MQ=48.43;MQRankSum=-9.035e+00;QD=26.64;ReadPosRankSum=-1.166e+00;SOR=0.623;VQSLOD=-5.192e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:67,57:124:99:1485,0,1832
chr1	144619346	rs4649563	G	A	13526.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-02;DB;DP=157;ExcessHet=1.5490;FS=2.372;MQ=51.31;MQRankSum=2.93;NEGATIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=1.98;SOR=0.498;VQSLOD=-3.321e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:94,63:157:99:0|1:144619346_G_A:2334,0,3895:144619346
chr1	144621555	.	A	G	707.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223e+00;DP=132;ExcessHet=3.9794;FS=2.304;MQ=44.90;MQRankSum=-3.915e+00;QD=1.99;ReadPosRankSum=1.72;SOR=0.674;VQSLOD=-4.676e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,25:132:99:256,0,2781
chr1	144621667	.	C	T	376.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DP=88;ExcessHet=3.9794;FS=0.891;MQ=52.66;MQRankSum=-2.533e+00;NEGATIVE_TRAIN_SITE;QD=2.06;ReadPosRankSum=0.276;SOR=0.827;VQSLOD=-3.870e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,9:88:81:81,0,2161
chr1	144811842	rs7411539	C	G	133.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DB;DP=48;ExcessHet=3.9794;FS=5.709;MQ=43.58;MQRankSum=-1.995e+00;QD=1.00;ReadPosRankSum=-1.715e+00;SOR=0.229;VQSLOD=-3.279e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,8:48:99:103,0,1313
chr1	144811924	rs320821	T	G	12234.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=95;ExcessHet=3.0103;FS=4.049;MQ=50.55;MQRankSum=-4.204e+00;NEGATIVE_TRAIN_SITE;QD=31.53;ReadPosRankSum=2.29;SOR=0.466;VQSLOD=-2.731e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3178,285,0
chr1	144811969	rs9725786	A	T	2686.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.153e+00;DB;DP=100;ExcessHet=3.9794;FS=2.010;MQ=53.20;MQRankSum=-3.332e+00;NEGATIVE_TRAIN_SITE;QD=8.95;ReadPosRankSum=-6.030e-01;SOR=0.580;VQSLOD=-3.453e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,37:100:99:792,0,1750
chr1	144811998	.	C	G	2620.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.55;DP=73;ExcessHet=3.9794;FS=4.370;MQ=55.38;MQRankSum=-6.232e+00;QD=11.64;ReadPosRankSum=-4.740e-01;SOR=1.043;VQSLOD=-3.470e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,27:73:99:728,0,1207
chr1	144812060	rs9725799	A	G	1449.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940e-01;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=54.60;MQRankSum=-4.272e+00;NEGATIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.541;SOR=0.608;VQSLOD=-3.870e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,13:37:99:337,0,697
chr1	144813529	rs320822	T	C	561.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.63;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=49.96;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=-1.150e+00;SOR=1.136;VQSLOD=-2.876e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:144813527_T_C:249,18,0:144813527
chr1	144813824	rs77446849	G	C	501.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=144;ExcessHet=3.9794;FS=6.834;MQ=47.55;MQRankSum=-4.428e+00;QD=1.47;ReadPosRankSum=4.04;SOR=1.042;VQSLOD=-4.900e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:128,16:144:99:134,0,3876
chr1	144813909	.	G	A	731.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.350e-01;DP=95;ExcessHet=3.9794;FS=8.431;MQ=41.99;MQRankSum=-4.593e+00;QD=3.47;ReadPosRankSum=1.67;SOR=0.296;VQSLOD=-4.688e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:80,15:95:99:0|1:144813909_G_A:328,0,3158:144813909
chr1	144813929	.	A	C	683.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=86;ExcessHet=3.9794;FS=3.955;MQ=40.40;MQRankSum=-3.921e+00;QD=3.63;ReadPosRankSum=0.575;SOR=0.396;VQSLOD=-4.300e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:75,11:86:99:0|1:144813909_G_A:290,0,3095:144813909
chr1	144814002	.	A	G	332.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DP=32;ExcessHet=3.9794;FS=0.000;MQ=40.73;MQRankSum=-2.792e+00;QD=4.82;ReadPosRankSum=-4.800e-01;SOR=0.730;VQSLOD=-5.106e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,5:32:99:0|1:144814002_A_G:115,0,1128:144814002
chr1	144814009	rs371873006	A	G	267.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.400e-01;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=40.85;MQRankSum=-2.358e+00;QD=4.31;ReadPosRankSum=0.072;SOR=0.573;VQSLOD=-4.998e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,4:30:84:0|1:144814002_A_G:84,0,1131:144814002
chr1	144815025	rs149154755	A	C	168.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=43.05;MQRankSum=-2.515e+00;QD=18.70;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=-3.548e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:65:177,0,65
chr1	144816211	rs61807096	G	A	199.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=16;ExcessHet=3.0103;FS=2.307;MQ=56.60;MQRankSum=-1.189e+00;NEGATIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.434;SOR=1.721;VQSLOD=-1.646e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:208,0,339
chr1	144816305	rs320826	C	G	49.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=10;ExcessHet=3.0103;FS=3.310;MQ=57.10;MQRankSum=0.493;NEGATIVE_TRAIN_SITE;QD=4.93;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=-1.903e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:58:58,0,278
chr1	144816441	.	T	A	107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910e+00;DP=77;ExcessHet=3.0103;FS=6.316;MQ=36.06;MQRankSum=-1.604e+00;QD=1.39;ReadPosRankSum=0.091;SOR=0.084;VQSLOD=-5.102e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,12:77:99:116,0,2080
chr1	144816724	rs370306464	G	A	1221.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e+00;DB;DP=71;ExcessHet=3.0103;FS=1.057;MQ=47.53;MQRankSum=-2.241e+00;QD=17.20;ReadPosRankSum=-2.441e+00;SOR=0.965;VQSLOD=-3.864e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,44:71:99:1230,0,716
chr1	144823086	rs144745201	G	A	888.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.756e+00;DB;DP=100;ExcessHet=3.0103;FS=6.428;MQ=36.82;MQRankSum=0.094;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=0.218;SOR=0.470;VQSLOD=-4.028e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,46:100:99:897,0,1187
chr1	144824146	rs200566890	A	C	1125.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.47;DB;DP=9;ExcessHet=3.0103;FS=3.056;MQ=44.57;MQRankSum=-3.673e+00;QD=26.81;ReadPosRankSum=1.78;SOR=1.981;VQSLOD=-3.476e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:370,27,0
chr1	144824666	rs603230	A	C	908.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=23;ExcessHet=6.9897;FS=8.666;MQ=51.98;MQRankSum=-5.016e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-3.470e-01;SOR=0.248;VQSLOD=-1.465e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,4:23:78:78,0,577
chr1	144825577	rs633899	G	A	362.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=38;ExcessHet=3.0103;FS=3.552;MQ=52.59;MQRankSum=-1.499e+00;NEGATIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-6.160e-01;SOR=1.609;VQSLOD=-1.982e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,13:38:99:371,0,679
chr1	144825681	rs662222	T	C	38.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=48.23;MQRankSum=-9.430e-01;QD=2.94;ReadPosRankSum=-9.870e-01;SOR=1.022;VQSLOD=-3.873e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,2:13:47:47,0,313
chr1	144828404	rs597581	T	A	914.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=19;ExcessHet=6.9897;FS=8.181;MQ=53.15;MQRankSum=1.27;NEGATIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=1.31;SOR=0.061;VQSLOD=-1.494e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:416,0,214
chr1	144828418	rs79756393	C	T	544.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=23;ExcessHet=6.9897;FS=7.090;MQ=53.61;MQRankSum=-4.448e+00;NEGATIVE_TRAIN_SITE;QD=5.74;ReadPosRankSum=-1.750e-01;SOR=2.592;VQSLOD=-3.799e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,6:23:99:127,0,680
chr1	144828454	rs9424774	G	C	1043.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927e+00;DB;DP=46;ExcessHet=6.9897;FS=7.858;MQ=54.86;MQRankSum=-6.803e+00;QD=5.86;ReadPosRankSum=1.91;SOR=1.807;VQSLOD=-4.581e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,20:46:99:588,0,828
chr1	144828748	rs144947204	C	T	2261.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691e+00;DB;DP=212;ExcessHet=6.9897;FS=16.164;MQ=52.16;MQRankSum=-2.695e+00;NEGATIVE_TRAIN_SITE;QD=3.35;ReadPosRankSum=-3.300e-01;SOR=0.873;VQSLOD=-3.905e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:177,35:212:99:622,0,4903
chr1	144828764	rs114576842	G	T	4276.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.739e+00;DB;DP=204;ExcessHet=6.9897;FS=14.953;MQ=53.38;MQRankSum=-5.094e+00;QD=6.46;ReadPosRankSum=2.31;SOR=0.529;VQSLOD=-4.210e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,38:204:99:1064,0,6825
chr1	144828765	rs1043478	A	T	4283.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.590e-01;DB;DP=202;ExcessHet=6.9897;FS=16.173;MQ=53.51;MQRankSum=-6.603e+00;QD=6.64;ReadPosRankSum=2.27;SOR=0.494;VQSLOD=-5.045e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:163,38:202:99:1064,0,6796
chr1	144828845	rs61807990	A	T	767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.79;DB;DP=93;ExcessHet=3.0103;FS=11.966;MQ=52.06;MQRankSum=-2.992e+00;NEGATIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=-5.430e-01;SOR=2.263;VQSLOD=-3.847e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,29:93:99:776,0,2131
chr1	144828857	rs201893749	C	G	543.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620e+00;DB;DP=77;ExcessHet=3.0103;FS=11.093;MQ=50.87;MQRankSum=-3.969e+00;NEGATIVE_TRAIN_SITE;QD=7.06;ReadPosRankSum=0.122;SOR=2.262;VQSLOD=-4.279e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,23:77:99:552,0,1929
chr1	144828910	rs12124435	A	T	1628.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=25;ExcessHet=6.9897;FS=3.458;MQ=49.51;MQRankSum=-7.150e-01;NEGATIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-6.010e-01;SOR=0.271;VQSLOD=-2.458e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:271,0,520
chr1	144852167	rs113514538	G	T	47.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=48.41;MQRankSum=-1.383e+00;QD=11.98;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=-3.376e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:55:55,0,68
chr1	144852203	rs74872612	T	G	68.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=52.07;MQRankSum=-2.515e+00;NEGATIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=-2.410e-01;SOR=0.283;VQSLOD=-3.258e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:76:76,0,215
chr1	144852235	rs75842891	T	C	421.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=14;ExcessHet=6.9897;FS=1.939;MQ=52.84;MQRankSum=-2.200e+00;NEGATIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-1.480e-01;SOR=1.445;VQSLOD=-2.338e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,6:14:99:0|1:144852235_T_C:228,0,318:144852235
chr1	144852236	rs78034674	C	G	421.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=14;ExcessHet=6.9897;FS=1.939;MQ=52.84;MQRankSum=-2.200e+00;NEGATIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-7.500e-02;SOR=1.445;VQSLOD=-2.337e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,6:14:99:0|1:144852235_T_C:228,0,318:144852235
chr1	144852249	rs1055317	C	T	480.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=52.50;MQRankSum=-2.638e+00;NEGATIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-3.270e-01;SOR=0.990;VQSLOD=-3.022e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:262,0,299
chr1	144852254	rs77608804	G	C	225.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220e-01;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=52.04;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=8.04;ReadPosRankSum=-3.000e-03;SOR=0.332;VQSLOD=-3.247e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:92:92,0,444
chr1	144852321	rs1055315	C	A	785.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=34;ExcessHet=6.9897;FS=0.924;MQ=55.37;MQRankSum=-3.393e+00;NEGATIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.507;SOR=0.903;VQSLOD=-3.530e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:361,0,459
chr1	144852390	rs61804988	C	T	927.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.280e-01;DB;DP=34;ExcessHet=6.9897;FS=1.822;MQ=57.52;MQRankSum=-2.062e+00;QD=11.32;ReadPosRankSum=0.523;SOR=0.566;VQSLOD=-1.746e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:328,0,622
chr1	144852476	rs1616066	T	C	676.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DB;DP=15;ExcessHet=6.9897;FS=1.017;MQ=54.84;MQRankSum=-7.740e-01;NEGATIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=0.079;SOR=0.463;VQSLOD=-2.966e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:82:82,0,372
chr1	144852545	rs1699760	C	T	287.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=9;ExcessHet=4.7712;FS=0.000;MQ=52.08;MQRankSum=-5.170e-01;NEGATIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.231;SOR=1.051;VQSLOD=-2.806e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:136,0,115
chr1	144854047	.	C	T	355.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=6.24;ReadPosRankSum=-1.735e+00;SOR=0.580;VQSLOD=3.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,5:19:99:0|1:144854047_C_T:168,0,701:144854047
chr1	144854048	.	C	G	355.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=6.24;ReadPosRankSum=-1.735e+00;SOR=0.580;VQSLOD=3.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,5:19:99:0|1:144854047_C_T:168,0,701:144854047
chr1	144854049	.	C	G	355.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=6.14;ReadPosRankSum=-1.431e+00;SOR=0.560;VQSLOD=3.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,5:19:99:0|1:144854047_C_T:168,0,701:144854047
chr1	144854052	rs1698584	G	A	1256.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e+00;DB;DP=19;ExcessHet=6.9897;FS=7.361;MQ=59.95;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=-1.650e+00;SOR=2.925;VQSLOD=-1.711e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,15:19:99:563,0,114
chr1	144854083	rs1699758	G	A	1080.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.882e+00;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=11.62;ReadPosRankSum=-5.400e-02;SOR=0.287;VQSLOD=4.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:453,0,533
chr1	144854087	rs4997150	A	G	805.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.524e+00;DB;DP=29;ExcessHet=6.9897;FS=3.496;MQ=59.97;MQRankSum=0.00;QD=8.22;ReadPosRankSum=-2.340e-01;SOR=0.111;VQSLOD=4.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,8:29:99:0|1:144854087_A_G:270,0,1015:144854087
chr1	144854095	rs4997149	G	T	793.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.807e+00;DB;DP=31;ExcessHet=6.9897;FS=3.790;MQ=59.97;MQRankSum=0.00;QD=7.49;ReadPosRankSum=0.791;SOR=0.091;VQSLOD=4.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,8:31:99:0|1:144854087_A_G:267,0,1053:144854087
chr1	144854180	rs4997148	T	C	2060.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DB;DP=120;ExcessHet=6.9897;FS=1.885;MQ=59.19;MQRankSum=-6.352e+00;QD=5.87;ReadPosRankSum=-6.810e-01;SOR=0.873;VQSLOD=-3.690e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:95,25:120:99:488,0,2934
chr1	144854245	rs4997147	C	T	5012.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DB;DP=279;ExcessHet=6.9897;FS=0.000;MQ=59.55;MQRankSum=-6.300e+00;QD=6.30;ReadPosRankSum=-5.270e-01;SOR=0.745;VQSLOD=-3.873e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:201,76:279:99:1526,0,5319
chr1	144854277	rs1699757	A	G	18116.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730e+00;DB;DP=331;ExcessHet=6.9897;FS=0.593;MQ=59.60;MQRankSum=-2.129e+00;QD=18.72;ReadPosRankSum=1.48;SOR=0.643;VQSLOD=-9.789e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:121,210:331:99:5051,0,2550
chr1	144854351	rs599643	A	C	23935.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.63;DB;DP=260;ExcessHet=3.9794;FS=0.000;MQ=59.89;MQRankSum=0.00;QD=28.87;ReadPosRankSum=-1.207e+00;SOR=0.723;VQSLOD=5.16;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,260:260:99:1|1:144854351_A_C:10421,781,0:144854351
chr1	144854376	rs2274128	C	A	1688.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859e+00;DB;DP=219;ExcessHet=3.9794;FS=0.000;MQ=59.63;MQRankSum=-2.735e+00;NEGATIVE_TRAIN_SITE;QD=4.10;ReadPosRankSum=0.687;SOR=0.731;VQSLOD=-1.974e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:183,36:219:99:0|1:144854351_A_C:517,0,6716:144854351
chr1	144854380	rs2798857	T	C	9567.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.45;DB;DP=212;ExcessHet=6.9897;FS=1.133;MQ=59.75;MQRankSum=0.00;QD=14.59;ReadPosRankSum=1.65;SOR=0.789;VQSLOD=4.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:102,110:212:99:0|1:144854351_A_C:3538,0,2860:144854351
chr1	144854397	rs833193	T	C	19057.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.61;DB;DP=174;ExcessHet=3.9794;FS=0.000;MQ=59.61;MQRankSum=-7.650e-01;NEGATIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=0.144;SOR=0.708;VQSLOD=-8.463e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,174:174:99:1|1:144854351_A_C:7885,533,0:144854351
chr1	144854412	rs77812232	A	C	7500.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.01;DB;DP=142;ExcessHet=6.9897;FS=0.000;MQ=59.41;MQRankSum=1.63;QD=15.86;ReadPosRankSum=0.814;SOR=0.729;VQSLOD=-3.988e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:68,74:142:99:0|1:144854351_A_C:2352,0,2275:144854351
chr1	144854454	rs2274129	A	C	2421.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.80;DB;DP=154;ExcessHet=3.0103;FS=3.735;MQ=58.09;MQRankSum=-3.203e+00;NEGATIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=0.157;SOR=0.990;VQSLOD=-2.289e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:79,75:154:99:2429,0,2169
chr1	144854491	rs2798856	T	G	8059.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=179;ExcessHet=6.9897;FS=0.000;MQ=58.22;MQRankSum=3.61;NEGATIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-1.176e+00;SOR=0.738;VQSLOD=-1.688e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:100,79:179:99:0|1:144854491_T_G:3010,0,4015:144854491
chr1	144854497	rs2653676	A	G	8258.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.471e+00;DB;DP=189;ExcessHet=6.9897;FS=1.777;MQ=58.14;MQRankSum=3.80;NEGATIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=-9.730e-01;SOR=0.843;VQSLOD=-2.459e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:107,82:189:99:0|1:144854491_T_G:3099,0,4112:144854491
chr1	144854528	rs78461771	A	G	4123.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=219;ExcessHet=3.9794;FS=0.000;MQ=57.84;MQRankSum=-7.777e+00;QD=8.50;ReadPosRankSum=0.383;SOR=0.670;VQSLOD=-4.864e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:151,68:219:99:0|1:144854528_A_G:2481,0,5956:144854528
chr1	144854537	rs3851872	T	C	4364.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.63;DB;DP=231;ExcessHet=3.9794;FS=0.000;MQ=57.97;MQRankSum=-7.706e+00;QD=8.66;ReadPosRankSum=0.391;SOR=0.673;VQSLOD=-4.756e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:153,78:231:99:0|1:144854528_A_G:2689,0,5990:144854528
chr1	144854597	rs3851873	T	C	16734.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=212;ExcessHet=6.9897;FS=2.482;MQ=58.47;MQRankSum=-3.994e+00;NEGATIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-9.200e-02;SOR=0.536;VQSLOD=-1.518e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:90,122:212:99:4821,0,3402
chr1	144854598	rs3863691	C	T	9397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=211;ExcessHet=6.9897;FS=0.549;MQ=58.46;MQRankSum=3.56;NEGATIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.538e+00;SOR=0.644;VQSLOD=-1.766e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:133,78:211:99:2861,0,5361
chr1	144854730	rs75855616	A	G	1023.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286e+00;DB;DP=39;ExcessHet=6.9897;FS=0.000;MQ=58.68;MQRankSum=-3.383e+00;NEGATIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=0.440;SOR=0.781;VQSLOD=-1.769e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,12:39:99:359,0,981
chr1	144854750	rs75538208	G	A	694.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=58.25;MQRankSum=-3.226e+00;NEGATIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=-1.630e-01;SOR=0.792;VQSLOD=-1.771e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,8:27:99:249,0,655
chr1	144854761	rs79445592	T	C	624.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=57.88;MQRankSum=-2.976e+00;NEGATIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=-6.130e-01;SOR=0.761;VQSLOD=-1.803e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,8:24:99:0|1:144854761_T_C:288,0,850:144854761
chr1	144854765	rs78741893	T	C	529.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=57.65;MQRankSum=-2.888e+00;NEGATIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=-6.380e-01;SOR=0.693;VQSLOD=-1.944e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,8:23:99:0|1:144854761_T_C:288,0,850:144854761
chr1	144854793	rs5004098	C	T	551.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=15;ExcessHet=6.9897;FS=2.706;MQ=56.83;MQRankSum=1.66;NEGATIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=1.08;SOR=1.409;VQSLOD=-1.945e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,5:15:99:0|1:144854793_C_T:180,0,576:144854793
chr1	144854795	rs2861512	G	A	221.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.140e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=55.97;MQRankSum=-3.478e+00;NEGATIVE_TRAIN_SITE;QD=6.92;ReadPosRankSum=-1.416e+00;SOR=0.866;VQSLOD=-3.730e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:120,0,395
chr1	144854799	rs5004097	C	T	496.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411e+00;DB;DP=14;ExcessHet=6.9897;FS=2.776;MQ=55.94;MQRankSum=1.44;NEGATIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.879;SOR=1.508;VQSLOD=-1.756e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,5:14:99:0|1:144854793_C_T:183,0,544:144854793
chr1	144855812	rs1699754	T	C	255.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=57.06;MQRankSum=-1.150e+00;NEGATIVE_TRAIN_SITE;QD=6.56;ReadPosRankSum=0.618;SOR=0.551;VQSLOD=-2.178e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:78:78,0,383
chr1	144855866	rs1698582	A	G	199.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=18;ExcessHet=4.7712;FS=1.527;MQ=57.22;MQRankSum=-1.599e+00;NEGATIVE_TRAIN_SITE;QD=6.24;ReadPosRankSum=-1.381e+00;SOR=1.061;VQSLOD=-2.795e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:72:72,0,353
chr1	144857068	rs905324	A	T	480.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623e+00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.69;ReadPosRankSum=0.414;SOR=0.314;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:271,0,392
chr1	144857499	.	G	T	247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.119e+00;DP=25;ExcessHet=3.0103;FS=0.000;MQ=52.02;MQRankSum=-2.442e+00;NEGATIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-1.420e-01;SOR=0.297;VQSLOD=-3.116e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:256,0,602
chr1	144857876	rs1698578	T	G	3135.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=67;ExcessHet=6.9897;FS=0.779;MQ=59.71;MQRankSum=-2.190e+00;QD=16.16;ReadPosRankSum=-4.840e-01;SOR=0.602;VQSLOD=-8.231e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,31:67:99:970,0,1028
chr1	144859624	rs1699820	T	C	422.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.20;ReadPosRankSum=0.619;SOR=1.061;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:54:232,0,54
chr1	144859720	rs678786	G	C	2575.29	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.19;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.79;ReadPosRankSum=0.372;SOR=0.527;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:954,81,0
chr1	144860026	rs1699819	G	C	2067.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=52;ExcessHet=6.9897;FS=5.615;MQ=59.59;MQRankSum=0.00;QD=14.07;ReadPosRankSum=1.03;SOR=1.204;VQSLOD=2.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:813,0,758
chr1	144860131	rs1699818	A	G	452.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.010e-01;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=58.43;MQRankSum=0.00;QD=11.92;ReadPosRankSum=-8.220e-01;SOR=0.412;VQSLOD=-8.192e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:267,0,250
chr1	144863207	rs1698593	C	T	1848.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.710e-01;DB;DP=75;ExcessHet=6.9897;FS=6.904;MQ=57.60;MQRankSum=-8.490e-01;NEGATIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=1.28;SOR=0.366;VQSLOD=-1.509e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,19:75:99:383,0,2356
chr1	144863208	rs1699813	A	G	4312.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=74;ExcessHet=3.9794;FS=0.632;MQ=57.49;MQRankSum=-8.490e-01;QD=24.93;ReadPosRankSum=1.29;SOR=0.817;VQSLOD=-1.456e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1176,0,828
chr1	144863613	rs1699812	C	T	3028.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.17;DB;DP=38;ExcessHet=6.9897;FS=1.425;MQ=60.00;MQRankSum=0.00;QD=17.02;ReadPosRankSum=0.453;SOR=1.211;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:686,0,570
chr1	144863737	rs1698594	C	G	362.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=57.76;MQRankSum=0.00;QD=16.50;ReadPosRankSum=0.484;SOR=0.693;VQSLOD=-9.856e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:69:142,0,69
chr1	144864454	rs1747948	G	A	1787.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166e+00;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.86;ReadPosRankSum=-3.300e-02;SOR=0.958;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,17:40:99:541,0,804
chr1	144864491	rs1698595	T	C	1084.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.055e+00;DB;DP=22;ExcessHet=6.9897;FS=3.020;MQ=60.00;MQRankSum=0.00;QD=13.91;ReadPosRankSum=-5.020e-01;SOR=2.030;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:276,0,454
chr1	144865596	rs71661996	G	A	52.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.47;ReadPosRankSum=0.366;SOR=0.223;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:61:61,0,167
chr1	144865627	rs745937	T	C	236.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.780e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:41:41,0,260
chr1	144865850	rs1613780	G	T	5013.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;DB;DP=126;ExcessHet=6.9897;FS=1.737;MQ=59.98;MQRankSum=0.00;QD=11.83;ReadPosRankSum=0.111;SOR=0.843;VQSLOD=4.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,65:126:99:1547,0,1416
chr1	144866400	rs924666	T	C	863.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047e+00;DB;DP=17;ExcessHet=6.9897;FS=3.096;MQ=60.00;MQRankSum=0.00;QD=16.94;ReadPosRankSum=-1.223e+00;SOR=1.734;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:337,0,226
chr1	144866509	rs924667	G	A	3764.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=93;ExcessHet=6.9897;FS=1.848;MQ=60.00;MQRankSum=0.00;QD=13.79;ReadPosRankSum=-1.550e-01;SOR=0.561;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,52:93:99:1365,0,1056
chr1	144866643	rs1620560	G	A	8511.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=234;ExcessHet=6.9897;FS=1.742;MQ=60.00;MQRankSum=0.00;QD=10.76;ReadPosRankSum=0.087;SOR=0.754;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,101:234:99:2486,0,3349
chr1	144866662	rs1064044	T	C	8633.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=231;ExcessHet=6.9897;FS=1.108;MQ=60.00;MQRankSum=0.00;QD=11.13;ReadPosRankSum=-6.630e-01;SOR=0.811;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,105:231:99:2515,0,3112
chr1	144868170	rs1628310	C	T	6439.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.630e+00;DB;DP=135;ExcessHet=6.9897;FS=0.637;MQ=60.00;MQRankSum=0.00;QD=13.64;ReadPosRankSum=1.73;SOR=0.627;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,67:135:99:1772,0,2044
chr1	144868204	rs1747951	A	C	5296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.18;DB;DP=71;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.94;ReadPosRankSum=-8.000e-03;SOR=0.805;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,39:71:99:1322,0,992
chr1	144868239	rs1618966	G	A	988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.91;ReadPosRankSum=1.27;SOR=0.922;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,7:40:99:160,0,1133
chr1	144871738	rs1698605	C	A	1680.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519e+00;DB;DP=25;ExcessHet=6.9897;FS=2.489;MQ=60.00;MQRankSum=0.00;QD=17.88;ReadPosRankSum=0.272;SOR=1.081;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,12:25:99:0|1:144871738_C_A:465,0,856:144871738
chr1	144871755	rs1778159	A	T	1885.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=36;ExcessHet=6.9897;FS=3.802;MQ=60.00;MQRankSum=0.00;QD=15.33;ReadPosRankSum=0.431;SOR=1.075;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,16:36:99:0|1:144871738_C_A:564,0,1065:144871738
chr1	144871782	rs1778158	A	G	2009.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200e-02;DB;DP=50;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.11;ReadPosRankSum=-5.840e-01;SOR=0.667;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:528,0,694
chr1	144871889	rs1698606	A	C	2785.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=82;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.80;ReadPosRankSum=-6.590e-01;SOR=0.694;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,34:82:99:825,0,1143
chr1	144873794	rs1610833	C	T	4602.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.070e-01;DB;DP=116;ExcessHet=6.9897;FS=6.166;MQ=60.00;MQRankSum=0.00;QD=11.57;ReadPosRankSum=-9.900e-01;SOR=1.023;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,47:116:99:1210,0,2038
chr1	144873818	rs1610566	A	G	6301.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=152;ExcessHet=6.9897;FS=2.852;MQ=60.00;MQRankSum=0.00;QD=12.21;ReadPosRankSum=-1.900e-02;SOR=0.903;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,64:152:99:1817,0,2623
chr1	144873840	rs1627335	A	G	7036.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=177;ExcessHet=6.9897;FS=3.640;MQ=60.00;MQRankSum=0.00;QD=11.77;ReadPosRankSum=0.897;SOR=1.013;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,76:177:99:2225,0,2845
chr1	144873887	rs1699787	C	T	8743.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=244;ExcessHet=6.9897;FS=3.345;MQ=60.00;MQRankSum=0.00;QD=10.94;ReadPosRankSum=0.600;SOR=0.977;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:141,103:244:99:2545,0,3769
chr1	144873962	rs11341221	CT	C	5932.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538e+00;DB;DP=301;ExcessHet=3.9794;FS=1.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=1.34;SOR=0.892;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:237,64:301:99:1676,0,8548
chr1	144874038	rs1419160	T	C	8995.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=209;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.81;ReadPosRankSum=0.413;SOR=0.703;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,89:209:99:2344,0,3165
chr1	144874070	rs1610565	C	T	5649.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.083e+00;DB;DP=132;ExcessHet=6.9897;FS=0.591;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=-5.100e-02;SOR=0.614;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,63:132:99:1577,0,2100
chr1	144874088	rs1419158	G	C	4931.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-01;DB;DP=106;ExcessHet=6.9897;FS=5.121;MQ=60.00;MQRankSum=0.00;QD=13.81;ReadPosRankSum=-4.000e-03;SOR=0.463;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1356,0,1778
chr1	144874471	rs1610768	T	A	279.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=7;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=19.99;ReadPosRankSum=0.366;SOR=2.303;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,191
chr1	144874489	rs1699788	G	A	475.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e-01;DB;DP=8;ExcessHet=3.9794;FS=3.617;MQ=60.00;MQRankSum=0.00;QD=20.69;ReadPosRankSum=1.44;SOR=2.179;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:59:59,0,237
chr1	144874641	rs1610771	G	C	2396.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145e+00;DB;DP=72;ExcessHet=6.9897;FS=3.541;MQ=59.93;MQRankSum=0.00;QD=10.29;ReadPosRankSum=0.173;SOR=0.469;VQSLOD=4.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,28:72:99:720,0,1371
chr1	144874760	rs1610774	T	C	5490.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=164;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=10.24;ReadPosRankSum=0.358;SOR=0.749;VQSLOD=4.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,62:164:99:1437,0,2395
chr1	144874815	rs1778155	T	C	2185.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=121;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=7.41;ReadPosRankSum=-2.490e-01;SOR=0.663;VQSLOD=4.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:99,22:121:99:320,0,2762
chr1	144874950	rs1747957	G	A	985.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.231e+00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=59.80;MQRankSum=0.00;QD=12.97;ReadPosRankSum=-2.580e-01;SOR=0.734;VQSLOD=4.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:328,0,404
chr1	144875799	rs764983	G	A	3020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.656e+00;DB;DP=86;ExcessHet=6.9897;FS=1.196;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-4.890e-01;SOR=0.799;VQSLOD=6.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1107,0,1284
chr1	144875979	rs71664005	G	C	816.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=151;ExcessHet=3.0103;FS=13.296;MQ=60.00;MQRankSum=0.00;QD=5.41;ReadPosRankSum=-2.270e-01;SOR=1.830;VQSLOD=12.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,35:151:99:825,0,3189
chr1	144877176	rs2762875	C	T	3800.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=71;ExcessHet=6.9897;FS=3.677;MQ=57.10;MQRankSum=-4.349e+00;NEGATIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-4.500e-02;SOR=0.501;VQSLOD=-2.831e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,35:71:99:1032,0,1082
chr1	144877366	rs1807092	A	G	4929.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.780e-01;DB;DP=123;ExcessHet=6.9897;FS=3.101;MQ=59.78;MQRankSum=0.00;QD=13.69;ReadPosRankSum=-7.400e-02;SOR=0.875;VQSLOD=4.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,64:123:99:1593,0,1460
chr1	144877390	rs1807093	G	A	4049.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.120e-01;DB;DP=90;ExcessHet=6.9897;FS=7.167;MQ=59.77;MQRankSum=0.00;QD=15.11;ReadPosRankSum=-4.690e-01;SOR=1.179;VQSLOD=4.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,48:90:99:1348,0,1120
chr1	144877520	rs2996282	A	C	117.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.51;ReadPosRankSum=-6.740e-01;SOR=1.179;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:49:49,0,230
chr1	144878928	rs2762876	G	T	7395.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.211e+00;DB;DP=162;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.25;ReadPosRankSum=0.035;SOR=0.702;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,82:162:99:2154,0,2339
chr1	144879264	rs2798901	A	G	5681.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785e+00;DB;DP=68;ExcessHet=3.9794;FS=2.076;MQ=60.00;MQRankSum=0.00;QD=26.43;ReadPosRankSum=0.879;SOR=0.884;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,54:68:99:1665,0,346
chr1	144879375	rs1747958	T	C	7221.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=184;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.63;ReadPosRankSum=-1.442e+00;SOR=0.684;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,96:184:99:2344,0,2286
chr1	144881389	rs1614163	T	C	1836.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.950e-01;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.143;SOR=0.518;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:565,0,621
chr1	144881711	rs937714	T	G	1009.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980e+00;DB;DP=44;ExcessHet=3.9794;FS=4.087;MQ=60.00;MQRankSum=0.00;QD=11.21;ReadPosRankSum=1.86;SOR=0.279;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,12:44:99:257,0,1049
chr1	144882581	rs1699836	A	G	5747.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.598e+00;DB;DP=122;ExcessHet=6.9897;FS=2.309;MQ=59.81;MQRankSum=0.00;QD=15.41;ReadPosRankSum=-9.850e-01;SOR=0.841;VQSLOD=4.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,65:122:99:2047,0,1760
chr1	144882823	rs1698647	C	T	15495.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226e+00;DB;DP=341;ExcessHet=6.9897;FS=0.540;MQ=60.00;MQRankSum=0.00;QD=13.55;ReadPosRankSum=-7.300e-01;SOR=0.756;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:163,178:341:99:4552,0,4249
chr1	144882912	rs1698646	G	T	2998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.42;DB;DP=109;ExcessHet=3.9794;FS=1.593;MQ=60.00;MQRankSum=0.00;QD=12.92;ReadPosRankSum=0.366;SOR=0.883;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,30:109:99:889,0,2449
chr1	144886063	rs1625285	T	C	2360.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005e+00;DB;DP=48;ExcessHet=6.9897;FS=3.207;MQ=60.00;MQRankSum=0.00;QD=14.48;ReadPosRankSum=-1.134e+00;SOR=0.991;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:508,0,818
chr1	144886092	rs1343472	C	T	2609.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.950e-01;DB;DP=68;ExcessHet=6.9897;FS=1.844;MQ=60.00;MQRankSum=0.00;QD=12.79;ReadPosRankSum=-1.150e-01;SOR=0.855;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,25:68:99:597,0,1207
chr1	144886197	rs1698624	A	T	5080.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.340e-01;DB;DP=124;ExcessHet=6.9897;FS=2.721;MQ=60.00;MQRankSum=0.00;QD=13.37;ReadPosRankSum=-4.190e-01;SOR=0.558;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,60:124:99:1509,0,1449
chr1	144886350	rs2296230	G	T	398.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120e-01;DB;DP=72;ExcessHet=3.0103;FS=4.408;MQ=60.00;MQRankSum=0.00;QD=5.53;ReadPosRankSum=-3.060e-01;SOR=1.524;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,18:72:99:407,0,1551
chr1	144886409	rs1620507	A	C	1632.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=25;ExcessHet=6.9897;FS=1.375;MQ=60.00;MQRankSum=0.00;QD=15.55;ReadPosRankSum=-1.284e+00;SOR=0.941;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:277,0,542
chr1	144890833	rs11447	T	C	946.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.15;ReadPosRankSum=0.297;SOR=0.560;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:249,0,229
chr1	144892089	rs1614098	G	T	1110.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.100e-02;DB;DP=25;ExcessHet=6.9897;FS=8.801;MQ=58.45;MQRankSum=-2.001e+00;NEGATIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.767;SOR=1.721;VQSLOD=-1.808e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,11:25:99:329,0,362
chr1	144892149	rs1698709	G	A	2361.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DB;DP=49;ExcessHet=6.9897;FS=6.628;MQ=59.25;MQRankSum=-1.715e+00;NEGATIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-2.045e+00;SOR=1.164;VQSLOD=-1.852e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,28:49:99:716,0,496
chr1	144892368	rs1698708	A	T	2610.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.470e-01;DB;DP=137;ExcessHet=3.9794;FS=1.598;MQ=60.00;MQRankSum=0.00;QD=9.36;ReadPosRankSum=0.763;SOR=0.580;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,28:137:99:564,0,3274
chr1	144892710	rs1699826	C	A	778.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=59.74;MQRankSum=0.00;QD=17.70;ReadPosRankSum=-9.730e-01;SOR=0.693;VQSLOD=4.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:101,0,149
chr1	144895460	rs1698703	C	T	2224.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483e+00;DB;DP=93;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.01;ReadPosRankSum=2.12;SOR=0.723;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,32:93:99:773,0,1854
chr1	144906508	rs34169189	C	T	391.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251e+00;DB;DP=23;ExcessHet=3.0103;FS=4.216;MQ=59.96;MQRankSum=-6.390e-01;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-8.080e-01;SOR=0.371;VQSLOD=1.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,15:23:99:400,0,213
chr1	144910082	rs638780	A	G	5261.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.260e-01;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.39;ReadPosRankSum=-5.970e-01;SOR=0.653;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,60:61:99:1741,138,0
chr1	144911702	rs1747928	C	A	1210.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.24;ReadPosRankSum=0.216;SOR=0.909;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,9:18:99:0|1:144911702_C_A:348,0,665:144911702
chr1	144911704	rs1778105	G	C	1210.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.88;ReadPosRankSum=0.284;SOR=0.859;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,9:19:99:0|1:144911702_C_A:348,0,665:144911702
chr1	144912153	rs1628172	A	G	1017.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.360e-01;DB;DP=9;ExcessHet=3.9794;FS=1.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=-8.240e-01;SOR=0.314;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:328,27,0
chr1	144912233	rs1629011	C	T	701.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DB;DP=19;ExcessHet=6.9897;FS=0.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-6.030e-01;SOR=0.846;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,4:19:69:69,0,343
chr1	144915412	rs1698684	T	C	1679.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DB;DP=123;ExcessHet=3.9794;FS=2.491;MQ=60.00;MQRankSum=0.00;QD=6.80;ReadPosRankSum=0.319;SOR=0.912;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,24:123:99:346,0,2683
chr1	144915561	rs1778111	G	A	4256.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244e+00;DB;DP=106;ExcessHet=6.9897;FS=8.461;MQ=59.62;MQRankSum=-2.105e+00;NEGATIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.496;SOR=0.413;VQSLOD=-1.771e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:63,43:106:99:1100,0,1800
chr1	144915623	rs66512216	AG	A	109.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917e+00;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.16;MQRankSum=-8.700e-01;POSITIVE_TRAIN_SITE;QD=2.28;ReadPosRankSum=-1.320e-01;SOR=0.279;VQSLOD=1.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,7:48:99:118,0,1453
chr1	144915624	rs1778112	G	A	2047.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DB;DP=48;ExcessHet=6.9897;FS=1.575;MQ=59.21;MQRankSum=-1.899e+00;QD=12.41;ReadPosRankSum=0.466;SOR=0.511;VQSLOD=-8.777e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,15:48:99:445,0,842
chr1	144916486	rs1699798	T	G	393.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.41;ReadPosRankSum=-9.920e-01;SOR=0.551;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:144916486_T_G:133,0,211:144916486
chr1	144916493	rs1699799	A	G	455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.28;ReadPosRankSum=-4.640e-01;SOR=0.693;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:144916486_T_G:133,0,211:144916486
chr1	144916676	rs1698683	C	T	2120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DB;DP=102;ExcessHet=3.9794;FS=1.626;MQ=60.00;MQRankSum=0.00;QD=8.65;ReadPosRankSum=2.41;SOR=0.829;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,21:102:99:366,0,2107
chr1	144916748	rs1747930	C	G	4656.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297e+00;DB;DP=89;ExcessHet=6.9897;FS=0.376;MQ=60.00;MQRankSum=0.00;QD=12.52;ReadPosRankSum=-1.369e+00;SOR=0.651;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,54:89:99:1257,0,818
chr1	144917546	rs1698682	A	G	4585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210e-01;DB;DP=91;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.79;ReadPosRankSum=0.147;SOR=0.701;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,36:91:99:889,0,1429
chr1	144917827	rs11295415	CA	C	821.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DB;DP=28;ExcessHet=3.9794;FS=9.603;MQ=56.20;MQRankSum=-8.030e-01;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.323;SOR=1.967;VQSLOD=0.293;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,8:28:99:216,0,663
chr1	144917841	rs1698681	T	C	1486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DB;DP=31;ExcessHet=6.9897;FS=2.726;MQ=56.77;MQRankSum=-1.387e+00;NEGATIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=0.761;SOR=1.077;VQSLOD=-2.350e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:31:99:453,0,302
chr1	144918034	rs2655804	A	G	636.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.90;ReadPosRankSum=0.338;SOR=0.538;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:301,0,292
chr1	144918957	rs1061308	T	A	2731.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.778e+00;DB;DP=58;ExcessHet=6.9897;FS=2.934;MQ=59.59;MQRankSum=0.00;QD=11.83;ReadPosRankSum=-8.280e-01;SOR=0.913;VQSLOD=2.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,20:58:99:412,0,996
chr1	144919094	rs1698680	C	T	1330.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805e+00;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.30;ReadPosRankSum=0.379;SOR=0.774;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:203,0,527
chr1	144921924	rs71664015	G	A	1201.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=169;ExcessHet=3.0103;FS=3.843;MQ=60.00;MQRankSum=0.00;QD=7.11;ReadPosRankSum=0.901;SOR=0.453;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:114,55:169:99:1210,0,3253
chr1	144922109	rs1343469	A	G	7350.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=127;ExcessHet=6.9897;FS=0.522;MQ=60.00;MQRankSum=0.00;QD=16.48;ReadPosRankSum=0.432;SOR=0.642;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,60:127:99:1763,0,1740
chr1	144922171	rs1343470	C	T	6855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=137;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=15.17;ReadPosRankSum=-2.610e-01;SOR=0.742;VQSLOD=4.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,63:137:99:1674,0,1864
chr1	144922523	rs2455994	C	T	2940.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=120;ExcessHet=3.9794;FS=3.823;MQ=60.00;MQRankSum=0.00;QD=9.77;ReadPosRankSum=0.426;SOR=0.518;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,42:120:99:748,0,1976
chr1	144922583	rs1359300	G	A	6079.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=116;ExcessHet=6.9897;FS=1.100;MQ=60.00;MQRankSum=0.00;QD=13.48;ReadPosRankSum=0.087;SOR=0.574;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,61:116:99:1425,0,1263
chr1	144922762	.	C	T	71.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.13;ReadPosRankSum=-1.111e+00;SOR=0.223;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:80:80,0,276
chr1	144923503	rs1778126	C	T	669.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.89;ReadPosRankSum=-7.020e-01;SOR=1.341;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:211,0,163
chr1	144923535	rs1778127	A	G	1585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.82;ReadPosRankSum=-5.610e-01;SOR=0.715;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:526,0,413
chr1	144923728	rs369106087	GT	G	934.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.36;ReadPosRankSum=0.997;SOR=0.746;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:110,37:147:99:943,0,3645
chr1	144923823	rs11268079	TAGGAAGAAACGGCA	T	9238.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;DB;DP=83;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.47;ReadPosRankSum=0.117;SOR=0.754;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3723,252,0
chr1	144930441	rs2261219	G	T	235.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.980e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.12;ReadPosRankSum=0.524;SOR=0.836;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	144930571	rs2762866	C	A	2124.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.56;ReadPosRankSum=0.363;SOR=0.684;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,22:33:99:602,0,295
chr1	144930596	rs2762867	C	A	2696.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520e-01;DB;DP=50;ExcessHet=6.9897;FS=0.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.920;SOR=0.615;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,31:50:99:805,0,427
chr1	144930940	rs2147326	T	C	6863.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=154;ExcessHet=6.9897;FS=2.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=1.01;SOR=0.846;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,66:154:99:1739,0,2279
chr1	144931330	rs2762745	C	T	11069.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.124e+00;DB;DP=269;ExcessHet=6.9897;FS=0.522;MQ=60.00;MQRankSum=0.00;QD=12.81;ReadPosRankSum=0.176;SOR=0.648;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:168,101:269:99:2334,0,4974
chr1	144931392	rs2798893	G	A	9540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=226;ExcessHet=6.9897;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=1.34;SOR=0.798;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,83:226:99:1858,0,3703
chr1	144931727	rs2985363	G	A	2915.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.425e+00;DB;DP=86;ExcessHet=3.9794;FS=3.616;MQ=60.00;MQRankSum=0.00;QD=14.58;ReadPosRankSum=0.044;SOR=1.122;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,23:86:99:559,0,2107
chr1	144946403	rs2798888	T	C	332.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.74;ReadPosRankSum=1.28;SOR=2.670;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:77,0,29
chr1	144946510	rs2488977	C	T	4604.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=3.066;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1112,90,0
chr1	144946768	rs2762733	G	A	3609.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=78;ExcessHet=6.9897;FS=1.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-8.550e-01;SOR=0.800;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,38:78:99:942,0,945
chr1	144946876	rs2798887	C	T	1457.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.30;ReadPosRankSum=-1.760e-01;SOR=1.382;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,7:16:99:0|1:144946876_C_T:226,0,409:144946876
chr1	144946883	rs2762732	G	C	1392.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.79;ReadPosRankSum=-2.330e-01;SOR=1.480;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,5:12:99:0|1:144946876_C_T:186,0,377:144946876
chr1	144946893	rs2798886	C	G	1201.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300e-01;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.13;ReadPosRankSum=-4.800e-01;SOR=1.464;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:144946876_C_T:192,0,314:144946876
chr1	144946908	rs4491020	C	T	827.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.09;ReadPosRankSum=0.792;SOR=1.352;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:144946876_C_T:148,0,275:144946876
chr1	144946958	rs4439318	G	A	465.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,65
chr1	144951959	rs142985095	T	C	1876.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=205;ExcessHet=6.9897;FS=0.000;MQ=52.99;MQRankSum=-1.212e+00;NEGATIVE_TRAIN_SITE;QD=2.58;ReadPosRankSum=-2.970e-01;SOR=0.716;VQSLOD=-3.584e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:176,29:205:99:249,0,4956
chr1	144951973	rs77471170	T	C	13932.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.540e-01;DB;DP=231;ExcessHet=6.9897;FS=1.207;MQ=53.84;MQRankSum=-6.540e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=0.415;SOR=0.603;VQSLOD=-1.029e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,150:231:99:3817,0,1930
chr1	144952078	rs71220421	C	A	8116.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.045e+00;DB;DP=235;ExcessHet=6.9897;FS=1.124;MQ=53.33;MQRankSum=0.817;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.885;SOR=0.777;VQSLOD=-1.380e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:179,56:235:99:1118,0,5030
chr1	144994441	.	T	C	35.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.71;ReadPosRankSum=0.791;SOR=0.061;VQSLOD=21.00;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,2:13:44:44,0,406
chr1	144994658	rs1664022	C	A	18571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281e+00;DB;DP=520;ExcessHet=6.9897;FS=0.545;MQ=60.00;MQRankSum=0.00;QD=11.75;ReadPosRankSum=-1.190e-01;SOR=0.619;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:283,237:520:99:5855,0,7362
chr1	144994861	rs2442640	C	T	42649.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=468;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=30.25;ReadPosRankSum=0.905;SOR=0.652;VQSLOD=5.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:114,354:468:99:10332,0,2254
chr1	144994902	rs4649499	G	A	254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=413;ExcessHet=3.0103;FS=1.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=0.62;ReadPosRankSum=-1.300e-02;SOR=0.568;VQSLOD=22.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:368,45:413:99:263,0,10787
chr1	144995101	.	C	T	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.54;ReadPosRankSum=0.068;SOR=0.693;VQSLOD=20.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:114,22:136:99:354,0,3167
chr1	145013802	rs2500344	T	G	1119.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.76;SOR=6.869;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:334,27,0
chr1	145014053	rs548602	T	C	1400.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=96;ExcessHet=6.9897;FS=1.041;MQ=60.00;MQRankSum=0.00;QD=4.72;ReadPosRankSum=-3.610e-01;SOR=0.618;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,30:96:99:622,0,1904
chr1	145014103	rs1778711	G	C	3528.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.133e+00;DB;DP=85;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.97;ReadPosRankSum=-2.210e-01;SOR=0.666;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,47:85:99:1184,0,1008
chr1	145014186	rs67011214	G	GA	1029.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=94;ExcessHet=6.9897;FS=0.498;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.48;ReadPosRankSum=2.20;SOR=0.735;VQSLOD=6.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:55,24:94:99:350,0,1239
chr1	145014210	rs1778710	G	A	1220.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430e-01;DB;DP=130;ExcessHet=6.9897;FS=0.544;MQ=59.98;MQRankSum=0.00;QD=3.85;ReadPosRankSum=1.26;SOR=0.626;VQSLOD=3.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:118,12:130:21:21,0,4467
chr1	145014263	rs1778708	C	T	4267.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-01;DB;DP=141;ExcessHet=6.9897;FS=0.522;MQ=60.00;MQRankSum=0.00;QD=10.59;ReadPosRankSum=-5.230e-01;SOR=0.654;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,62:141:99:1410,0,1918
chr1	145014394	rs1107089	C	T	3146.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=47;ExcessHet=6.9897;FS=3.283;MQ=60.00;MQRankSum=0.00;QD=17.88;ReadPosRankSum=0.380;SOR=0.446;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,28:47:99:0|1:145014394_C_T:1000,0,1160:145014394
chr1	145014411	rs1778707	T	C	2634.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=41;ExcessHet=6.9897;FS=4.504;MQ=60.00;MQRankSum=0.00;QD=18.43;ReadPosRankSum=1.43;SOR=0.322;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,22:41:99:0|1:145014394_C_T:846,0,1143:145014394
chr1	145014436	rs3856006	G	A	410.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.41;ReadPosRankSum=2.17;SOR=0.342;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,4:22:99:0|1:145014394_C_T:104,0,1308:145014394
chr1	145014535	rs5777510	CT	C	232.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.00;SOR=2.448;VQSLOD=6.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:14:80,0,14
chr1	145016020	rs657162	T	G	7642.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=78;ExcessHet=3.0103;FS=2.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.58;ReadPosRankSum=1.46;SOR=1.629;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2361,233,0
chr1	145016032	rs112952246	C	CA	1002.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;DB;DP=55;ExcessHet=3.9794;FS=0.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.71;ReadPosRankSum=-7.370e-01;SOR=0.772;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,21:55:99:361,0,864
chr1	145016034	.	A	AC	534.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099e+00;DP=56;ExcessHet=6.9897;FS=2.680;MQ=60.00;MQRankSum=0.00;QD=2.94;ReadPosRankSum=0.693;SOR=0.445;VQSLOD=5.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,6:56:16:16,0,1607
chr1	145017784	rs202050342	CT	C	408.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.02;POSITIVE_TRAIN_SITE;QD=29.15;SOR=2.985;VQSLOD=5.48;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:145017784_CT_C:118,9,0:145017784
chr1	145017789	.	T	A	48.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.20;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:33:0|1:145017784_CT_C:56,0,33:145017784
chr1	145018023	rs2799192	G	T	2071.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010e-01;DB;DP=62;ExcessHet=6.9897;FS=4.840;MQ=60.00;MQRankSum=0.00;QD=9.38;ReadPosRankSum=-1.140e-01;SOR=1.023;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:646,0,867
chr1	145018102	rs5777512	G	GAGAA	767.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=20;ExcessHet=3.9794;FS=10.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.476;SOR=2.321;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,7:20:99:250,0,590
chr1	145020936	rs1778693	A	G	832.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.875e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.62;ReadPosRankSum=0.00;SOR=0.434;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:165,0,433
chr1	145021024	rs1778692	G	C	2414.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322e+00;DB;DP=62;ExcessHet=6.9897;FS=1.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.016;SOR=0.866;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,16:62:99:0|1:145021024_G_C:579,0,1935:145021024
chr1	145021034	rs674066	C	A	1372.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=70;ExcessHet=6.9897;FS=1.620;MQ=60.00;MQRankSum=0.00;QD=6.90;ReadPosRankSum=-4.710e-01;SOR=0.905;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,19:70:99:0|1:145021024_G_C:648,0,2018:145021024
chr1	145021089	rs1613515	G	A	4060.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.880e-01;DB;DP=147;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.62;ReadPosRankSum=-5.840e-01;SOR=0.678;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,46:147:99:1048,0,2869
chr1	145021265	rs673110	A	G	1345.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DB;DP=93;ExcessHet=6.9897;FS=0.520;MQ=59.99;MQRankSum=0.00;QD=3.65;ReadPosRankSum=-7.630e-01;SOR=0.630;VQSLOD=3.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:72,21:93:99:439,0,2062
chr1	145038686	rs67176560	AG	A	233.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=8;ExcessHet=3.9794;FS=10.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.198;SOR=0.015;VQSLOD=3.53;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,3:8:95:95,0,178
chr1	145038736	rs1663882	C	G	1084.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.464e+00;DB;DP=25;ExcessHet=6.9897;FS=4.528;MQ=60.00;MQRankSum=0.00;QD=13.73;ReadPosRankSum=-1.370e-01;SOR=0.256;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:383,0,380
chr1	145038815	rs2442664	A	G	4270.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.350e-01;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.82;MQRankSum=-5.780e-01;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=-6.610e-01;SOR=0.804;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,43:51:89:1037,0,89
chr1	145038889	rs10797615	G	A	414.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340e-01;DB;DP=66;ExcessHet=3.9794;FS=2.271;MQ=60.00;MQRankSum=0.00;QD=3.11;ReadPosRankSum=0.528;SOR=0.423;VQSLOD=20.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:56,10:66:99:144,0,1877
chr1	145038952	rs1663881	C	T	3798.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DB;DP=80;ExcessHet=6.9897;FS=3.365;MQ=60.00;MQRankSum=0.00;QD=18.44;ReadPosRankSum=-3.010e-01;SOR=0.952;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,51:80:99:1689,0,699
chr1	145038954	rs10797616	G	T	394.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=79;ExcessHet=3.9794;FS=1.820;MQ=60.00;MQRankSum=0.00;QD=2.63;ReadPosRankSum=-5.100e-02;SOR=0.493;VQSLOD=20.75;culprit=QD	GT:AD:DP:GQ:PL	0/1:65,14:79:99:140,0,2266
chr1	145039026	rs1663880	T	C	1855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651e+00;DB;DP=53;ExcessHet=6.9897;FS=3.327;MQ=60.00;MQRankSum=0.00;QD=13.75;ReadPosRankSum=0.041;SOR=1.014;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,31:53:99:771,0,452
chr1	145039523	rs1663879	G	T	787.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.66;DB;DP=92;ExcessHet=3.9794;FS=1.785;MQ=60.00;MQRankSum=0.00;QD=4.19;ReadPosRankSum=0.305;SOR=0.910;VQSLOD=20.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:83,9:92:67:67,0,2229
chr1	145039562	rs1663878	C	T	5052.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119e+00;DB;DP=142;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.02;ReadPosRankSum=0.425;SOR=0.679;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,65:142:99:1502,0,1988
chr1	145039821	rs7554603	C	A	1382.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.54;DB;DP=64;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.17;ReadPosRankSum=0.278;SOR=0.518;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,16:64:99:456,0,2307
chr1	145039831	rs1343582	A	G	2608.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=55;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.53;ReadPosRankSum=-1.290e-01;SOR=0.611;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,21:55:99:746,0,1148
chr1	145039866	rs1445033	A	G	2059.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460e+00;DB;DP=35;ExcessHet=6.9897;FS=0.000;MQ=59.86;MQRankSum=0.00;QD=19.25;ReadPosRankSum=0.562;SOR=0.272;VQSLOD=5.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:726,0,535
chr1	145074882	rs3845334	G	T	1040.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109e+00;DB;DP=111;ExcessHet=3.9794;FS=5.681;MQ=59.96;MQRankSum=0.615;QD=4.77;ReadPosRankSum=-2.480e-01;SOR=0.356;VQSLOD=0.156;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:82,29:111:99:628,0,2399
chr1	145074939	rs1663854	T	C	5913.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.896e+00;DB;DP=246;ExcessHet=6.9897;FS=3.634;MQ=60.00;MQRankSum=0.00;QD=7.79;ReadPosRankSum=0.036;SOR=0.466;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:151,95:246:99:2176,0,4158
chr1	145074975	rs56128713	G	A	1445.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=277;ExcessHet=3.9794;FS=2.458;MQ=60.00;MQRankSum=0.00;QD=2.31;ReadPosRankSum=1.12;SOR=0.970;VQSLOD=20.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:248,29:277:64:64,0,6376
chr1	145075208	rs6424335	T	A	1996.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241e+00;DB;DP=81;ExcessHet=6.9897;FS=6.201;MQ=60.00;MQRankSum=0.00;QD=7.96;ReadPosRankSum=1.65;SOR=0.366;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,55:81:99:1549,0,709
chr1	145075234	rs9424815	C	T	400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052e+00;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.42;ReadPosRankSum=1.78;SOR=0.713;VQSLOD=22.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,6:47:67:67,0,1439
chr1	145075315	rs920932	G	A	756.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.14;ReadPosRankSum=-1.331e+00;SOR=0.546;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:92:92,0,248
chr1	145075355	rs5777527	A	AGAGACC	228.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DB;DP=11;ExcessHet=6.9897;FS=1.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.72;ReadPosRankSum=-2.300e-01;SOR=1.201;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,2:11:57:57,0,372
chr1	145075519	rs2596337	G	C	1230.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.61;ReadPosRankSum=-8.200e-01;SOR=0.530;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:373,0,488
chr1	145075683	rs2762779	C	T	6819.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=302;ExcessHet=6.9897;FS=0.569;MQ=60.00;MQRankSum=0.00;QD=7.82;ReadPosRankSum=0.734;SOR=0.589;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:206,96:302:99:2122,0,5400
chr1	145075775	rs76199660	G	A	2012.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289e+00;DB;DP=567;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.69;ReadPosRankSum=-1.400e-01;SOR=0.809;VQSLOD=20.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:503,64:567:99:175,0,14621
chr1	145075854	rs1663853	G	C	21348.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013e+00;DB;DP=644;ExcessHet=6.9897;FS=0.516;MQ=59.99;MQRankSum=0.00;QD=11.56;ReadPosRankSum=0.752;SOR=0.724;VQSLOD=4.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:318,326:644:99:7843,0,7905
chr1	145075923	rs6656135	C	T	6019.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DB;DP=438;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.88;ReadPosRankSum=0.983;SOR=0.681;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:214,224:438:99:5614,0,5808
chr1	145076041	rs1778767	C	T	700.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e+00;DB;DP=67;ExcessHet=3.9794;FS=2.246;MQ=60.00;MQRankSum=0.00;QD=4.64;ReadPosRankSum=0.741;SOR=1.440;VQSLOD=20.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,9:67:99:137,0,2109
chr1	145103660	rs7556430	A	G	78.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.27;SOR=2.303;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr1	145103844	rs2590144	G	A	1959.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152e+00;DB;DP=59;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.75;ReadPosRankSum=-3.050e-01;SOR=0.669;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,18:59:99:464,0,1266
chr1	145103947	rs2794062	T	C	4696.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=209;ExcessHet=6.9897;FS=0.559;MQ=60.00;MQRankSum=0.00;QD=6.93;ReadPosRankSum=-1.960e-01;SOR=0.772;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,71:209:99:1438,0,3189
chr1	145104052	rs371591663	AGT	A	3598.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DB;DP=113;ExcessHet=6.9897;FS=5.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=6.000e-03;SOR=1.049;VQSLOD=6.32;culprit=FS	GT:AD:DP:GQ:PL	0/1:95,18:113:99:459,0,3832
chr1	145109295	rs143391068	A	C	193.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.87;SOR=0.646;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:99:102,0,436
chr1	145109312	rs11370361	C	CA	338.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=-2.840e-01;SOR=0.813;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:101,0,187
chr1	145109456	rs7553975	C	T	2826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708e+00;DB;DP=117;ExcessHet=6.9897;FS=0.634;MQ=60.00;MQRankSum=0.00;QD=6.84;ReadPosRankSum=0.732;SOR=0.613;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,38:117:99:779,0,2344
chr1	145109468	rs2442652	A	G	15468.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.62;DB;DP=132;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.05;ReadPosRankSum=0.804;SOR=0.588;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4684,396,0
chr1	145109493	rs2442651	C	T	1590.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DB;DP=168;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=2.75;ReadPosRankSum=-1.370e-01;SOR=0.698;VQSLOD=3.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:151,17:168:29:29,0,4353
chr1	145109549	rs2596331	G	T	3151.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127e+00;DB;DP=253;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.58;ReadPosRankSum=0.840;SOR=0.666;VQSLOD=5.68;culprit=QD	GT:AD:DP:GQ:PL	0/1:202,51:253:99:868,0,5391
chr1	145109583	rs2794053	C	A	13170.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=265;ExcessHet=6.9897;FS=1.099;MQ=60.00;MQRankSum=0.00;QD=14.01;ReadPosRankSum=0.071;SOR=0.768;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,142:265:99:3564,0,2707
chr1	145109661	rs2655551	G	A	5330.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DB;DP=201;ExcessHet=6.9897;FS=0.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.76;ReadPosRankSum=-1.022e+00;SOR=0.775;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,57:201:99:1323,0,3934
chr1	145109809	rs2596327	T	A	692.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.250e-01;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.73;ReadPosRankSum=0.168;SOR=0.304;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:284,0,604
chr1	145109897	rs2289797	C	T	62.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.62;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,77
chr1	145112284	.	CCG	C	1930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DP=60;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.16;ReadPosRankSum=-1.453e+00;SOR=0.695;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,17:60:99:0|1:145112284_CCG_C:623,0,2722:145112284
chr1	145112287	rs2794042	T	C	858.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=62;ExcessHet=6.9897;FS=5.265;MQ=60.00;MQRankSum=0.00;QD=4.85;ReadPosRankSum=0.141;SOR=1.387;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,9:62:99:163,0,1761
chr1	145112288	.	G	GCA	2003.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DP=62;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.01;ReadPosRankSum=-1.618e+00;SOR=0.701;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,18:62:99:0|1:145112284_CCG_C:623,0,2722:145112284
chr1	145112313	rs2596302	T	C	1094.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=95;ExcessHet=6.9897;FS=4.594;MQ=60.00;MQRankSum=0.00;QD=4.15;ReadPosRankSum=0.532;SOR=0.375;VQSLOD=21.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:77,18:95:99:332,0,2332
chr1	145112414	rs2590131	T	C	5049.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610e-01;DB;DP=198;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.53;ReadPosRankSum=0.657;SOR=0.683;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:155,43:198:99:0|1:145112414_T_C:1289,0,7232:145112414
chr1	145112420	rs2794041	C	T	4317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DB;DP=200;ExcessHet=6.9897;FS=1.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.32;ReadPosRankSum=0.276;SOR=0.546;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:147,53:200:99:967,0,4560
chr1	145112428	rs2794040	C	T	5048.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=202;ExcessHet=6.9897;FS=1.321;MQ=60.00;MQRankSum=0.00;QD=7.21;ReadPosRankSum=1.07;SOR=0.595;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:159,43:202:99:0|1:145112414_T_C:1268,0,7205:145112414
chr1	145112468	rs200742331	A	C	189.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=176;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.08;ReadPosRankSum=-2.240e-01;SOR=0.686;VQSLOD=20.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:155,21:176:99:198,0,4865
chr1	145112485	rs2794039	C	T	2841.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DB;DP=163;ExcessHet=6.9897;FS=1.320;MQ=60.00;MQRankSum=0.00;QD=4.41;ReadPosRankSum=-4.800e-02;SOR=0.581;VQSLOD=20.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:127,36:163:99:550,0,3727
chr1	145115556	rs7545073	A	C	243.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.12;ReadPosRankSum=0.105;SOR=0.142;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:97:97,0,246
chr1	145115602	rs7540746	C	T	385.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721e+00;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.78;ReadPosRankSum=0.690;SOR=0.043;VQSLOD=21.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,5:28:99:120,0,869
chr1	145115658	.	TATTTTTAA	T	1658.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528e+00;DP=79;ExcessHet=6.9897;FS=1.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.19;ReadPosRankSum=-4.630e-01;SOR=0.481;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:63,16:79:99:483,0,2768
chr1	145115810	rs2655557	A	G	11433.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064e+00;DB;DP=246;ExcessHet=6.9897;FS=0.519;MQ=59.97;MQRankSum=0.00;QD=14.40;ReadPosRankSum=-1.640e-01;SOR=0.744;VQSLOD=4.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:125,121:246:99:3686,0,3102
chr1	145115820	rs2655558	T	C	2844.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442e+00;DB;DP=238;ExcessHet=6.9897;FS=0.638;MQ=59.97;MQRankSum=0.00;QD=3.56;ReadPosRankSum=-1.850e-01;SOR=0.785;VQSLOD=3.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:190,48:238:99:711,0,8255
chr1	145116027	rs7550440	T	C	362.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.15;ReadPosRankSum=-8.450e-01;SOR=0.085;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,3:20:71:71,0,620
chr1	145139088	rs150935736	C	CG	3309.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=39.97;QD=25.98;SOR=8.955;VQSLOD=5.65;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,25:25:75:935,75,0
chr1	145209012	.	G	A	73.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901e+00;DP=24;ExcessHet=3.0103;FS=4.197;MQ=43.28;MQRankSum=-1.995e+00;QD=3.05;ReadPosRankSum=1.28;SOR=0.067;VQSLOD=-3.049e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,5:24:82:82,0,702
chr1	145209116	.	T	C	144.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.350e-01;DP=68;ExcessHet=3.9794;FS=11.892;MQ=48.39;MQRankSum=-2.774e+00;QD=0.90;ReadPosRankSum=0.905;SOR=0.477;VQSLOD=-3.641e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,12:68:94:94,0,1518
chr1	145209330	rs1738644	G	C	4637.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=201;ExcessHet=6.9897;FS=4.240;MQ=57.71;MQRankSum=-3.757e+00;NEGATIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=0.469;SOR=1.013;VQSLOD=-3.014e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:108,66:201:99:1479,0,3193
chr1	145209350	.	A	AGGC	696.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550e+00;DP=235;ExcessHet=3.0103;FS=0.000;MQ=55.59;MQRankSum=0.443;QD=2.96;ReadPosRankSum=-4.170e-01;SOR=0.614;VQSLOD=0.280;culprit=QD	GT:AD:DP:GQ:PL	0/1:205,30:235:99:705,0,9617
chr1	145209612	.	GCCCCGCCAACCGCCGGGGTT	G	19095.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DP=195;ExcessHet=3.0103;FS=0.904;MQ=57.56;MQRankSum=-1.900e-01;POSITIVE_TRAIN_SITE;QD=32.53;ReadPosRankSum=-8.370e-01;SOR=0.933;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:70,125:195:99:4925,0,4713
chr1	145210169	.	T	C	770.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.724e+00;DP=22;ExcessHet=6.9897;FS=0.000;MQ=50.85;MQRankSum=-3.337e+00;NEGATIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=-2.650e-01;SOR=0.816;VQSLOD=-3.554e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,3:22:30:30,0,664
chr1	145248601	rs74819956	G	C	884.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=51.54;MQRankSum=-3.691e+00;NEGATIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=1.34;SOR=0.231;VQSLOD=-3.379e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,6:26:99:0|1:145248601_G_C:192,0,1579:145248601
chr1	145248605	rs74374668	C	G	878.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.77;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=50.68;MQRankSum=-3.690e+00;NEGATIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.28;SOR=0.208;VQSLOD=-3.390e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,6:27:99:0|1:145248601_G_C:189,0,1613:145248601
chr1	145273302	rs201646101	A	G	10504.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=1424;ExcessHet=6.9897;FS=0.000;MQ=53.29;MQRankSum=-6.530e-01;NEGATIVE_TRAIN_SITE;QD=2.52;ReadPosRankSum=0.258;SOR=0.588;VQSLOD=-3.518e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1125,299:1424:99:4484,0,29495
chr1	145273345	rs75987820	T	C	11104.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=1564;ExcessHet=6.9897;FS=1.518;MQ=56.51;MQRankSum=-5.920e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=2.32;ReadPosRankSum=0.418;SOR=0.822;VQSLOD=-1.561e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:1243,321:1564:99:5186,0,33134
chr1	145273473	rs202082259	T	C	5235.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=547;ExcessHet=6.9897;FS=0.000;MQ=54.23;MQRankSum=-2.126e+00;NEGATIVE_TRAIN_SITE;QD=2.78;ReadPosRankSum=0.859;SOR=0.666;VQSLOD=-3.786e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:443,104:547:99:1863,0,12984
chr1	145273520	rs2793994	G	A	7489.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=250;ExcessHet=6.9897;FS=0.000;MQ=45.07;MQRankSum=-4.752e+00;QD=8.30;ReadPosRankSum=0.796;SOR=0.803;VQSLOD=-4.410e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:194,56:250:99:1265,0,5823
chr1	145281203	rs147993620	G	A	1883.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.332e+00;DB;DP=56;ExcessHet=6.9897;FS=0.000;MQ=45.92;MQRankSum=-1.447e+00;QD=8.12;ReadPosRankSum=-9.800e-02;SOR=0.469;VQSLOD=-3.818e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,20:56:99:641,0,1343
chr1	145281247	rs74721027	T	A	5127.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.351e+00;DB;DP=149;ExcessHet=6.9897;FS=0.000;MQ=42.20;MQRankSum=-7.050e-01;QD=8.90;ReadPosRankSum=1.39;SOR=0.635;VQSLOD=-4.648e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,48:149:99:1227,0,3352
chr1	145281543	rs8002	C	T	17624.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001e+00;DB;DP=966;ExcessHet=6.9897;FS=0.000;MQ=55.53;MQRankSum=-2.382e+00;NEGATIVE_TRAIN_SITE;QD=5.41;ReadPosRankSum=-1.012e+00;SOR=0.693;VQSLOD=-3.634e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:684,282:966:99:6154,0,19177
chr1	145281613	rs12120756	C	A	10156.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.583e+00;DB;DP=740;ExcessHet=6.9897;FS=0.000;MQ=57.04;MQRankSum=-5.400e-01;NEGATIVE_TRAIN_SITE;QD=4.10;ReadPosRankSum=1.12;SOR=0.706;VQSLOD=-2.409e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:648,92:740:99:0|1:145281613_C_A:1724,0,28231:145281613
chr1	145281633	rs28576333	C	A	9288.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.677e+00;DB;DP=663;ExcessHet=6.9897;FS=0.000;MQ=55.89;MQRankSum=-1.310e-01;NEGATIVE_TRAIN_SITE;QD=4.13;ReadPosRankSum=0.894;SOR=0.753;VQSLOD=-3.296e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:580,83:663:99:0|1:145281613_C_A:1692,0,26221:145281613
chr1	145281780	rs190671398	T	A	1411.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523e+00;DB;DP=221;ExcessHet=3.9794;FS=2.563;MQ=57.43;MQRankSum=-1.942e+00;NEGATIVE_TRAIN_SITE;QD=2.59;ReadPosRankSum=-2.190e-01;SOR=1.019;VQSLOD=-3.043e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:197,24:221:99:182,0,6532
chr1	145282093	rs199946317	G	A	5111.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=140;ExcessHet=6.9897;FS=0.712;MQ=57.42;MQRankSum=-7.659e+00;QD=9.98;ReadPosRankSum=-6.940e-01;SOR=0.737;VQSLOD=-4.521e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:96,44:140:99:1181,0,2983
chr1	145290279	rs4659319	G	A	56.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.38;ReadPosRankSum=-4.310e-01;SOR=0.061;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:65:65,0,155
chr1	145290320	rs2949607	C	T	654.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=56.74;MQRankSum=-2.087e+00;NEGATIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.119;SOR=0.481;VQSLOD=-2.188e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:198,0,252
chr1	145290346	rs2746747	A	G	1721.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=29;ExcessHet=6.9897;FS=2.521;MQ=55.88;MQRankSum=-3.347e+00;NEGATIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=0.00;SOR=0.400;VQSLOD=-2.777e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:620,0,460
chr1	145290351	rs2982634	A	G	506.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=36;ExcessHet=6.9897;FS=4.245;MQ=56.22;MQRankSum=-3.821e+00;NEGATIVE_TRAIN_SITE;QD=4.83;ReadPosRankSum=0.275;SOR=0.284;VQSLOD=-2.996e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,9:36:99:170,0,1055
chr1	145290377	rs2982633	T	C	1651.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DB;DP=55;ExcessHet=6.9897;FS=0.000;MQ=57.32;MQRankSum=-4.812e+00;NEGATIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-1.418e+00;SOR=0.640;VQSLOD=-2.854e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,20:55:99:467,0,944
chr1	145290398	rs4143495	G	A	451.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DB;DP=68;ExcessHet=6.9897;FS=3.641;MQ=57.77;MQRankSum=1.73;NEGATIVE_TRAIN_SITE;QD=2.07;ReadPosRankSum=0.535;SOR=0.399;VQSLOD=-2.527e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:51,17:68:99:336,0,1497
chr1	145290401	rs77093221	T	G	871.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=72;ExcessHet=6.9897;FS=0.000;MQ=57.87;MQRankSum=-4.567e+00;NEGATIVE_TRAIN_SITE;QD=3.74;ReadPosRankSum=-2.690e-01;SOR=0.644;VQSLOD=-2.833e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,7:72:92:0|1:145290401_T_G:92,0,2797:145290401
chr1	145290409	rs77693292	G	A	819.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DB;DP=79;ExcessHet=6.9897;FS=0.698;MQ=57.99;MQRankSum=-4.959e+00;NEGATIVE_TRAIN_SITE;QD=3.33;ReadPosRankSum=0.060;SOR=0.760;VQSLOD=-3.029e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:72,7:79:77:0|1:145290401_T_G:77,0,2923:145290401
chr1	145290547	rs77744531	C	A	448.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.420e-01;DB;DP=62;ExcessHet=3.9794;FS=3.877;MQ=59.06;MQRankSum=-7.182e+00;QD=3.43;ReadPosRankSum=-3.130e-01;SOR=1.113;VQSLOD=-5.268e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,11:62:99:198,0,1760
chr1	145290553	rs4143494	C	T	733.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636e+00;DB;DP=58;ExcessHet=6.9897;FS=12.035;MQ=58.85;MQRankSum=1.20;NEGATIVE_TRAIN_SITE;QD=3.74;ReadPosRankSum=1.35;SOR=0.230;VQSLOD=-1.754e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,18:58:99:362,0,1329
chr1	145290560	rs76702723	T	C	593.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DB;DP=52;ExcessHet=6.9897;FS=4.265;MQ=58.67;MQRankSum=-7.067e+00;QD=3.25;ReadPosRankSum=-1.985e+00;SOR=1.137;VQSLOD=-5.021e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,11:52:99:339,0,1405
chr1	145290570	rs2725886	G	A	732.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766e+00;DB;DP=45;ExcessHet=6.9897;FS=6.915;MQ=58.51;MQRankSum=1.20;NEGATIVE_TRAIN_SITE;QD=4.61;ReadPosRankSum=-4.180e-01;SOR=0.284;VQSLOD=-1.456e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,15:45:99:343,0,1023
chr1	145290583	rs75464601	G	C	222.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=36;ExcessHet=3.9794;FS=6.753;MQ=58.06;MQRankSum=-5.862e+00;QD=3.09;ReadPosRankSum=-8.310e-01;SOR=2.316;VQSLOD=-4.184e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,4:36:72:72,0,999
chr1	145293012	rs6424352	G	A	1159.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023e+00;DB;DP=59;ExcessHet=6.9897;FS=3.931;MQ=57.10;MQRankSum=0.231;NEGATIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=0.055;SOR=1.143;VQSLOD=-2.055e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,13:59:99:302,0,1433
chr1	145293274	.	T	G	533.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DP=52;ExcessHet=3.9794;FS=0.000;MQ=44.91;MQRankSum=-3.991e+00;QD=5.03;ReadPosRankSum=1.70;SOR=0.564;VQSLOD=-4.573e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,8:52:99:172,0,1564
chr1	145293425	rs7366490	C	A	2379.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262e+00;DB;DP=295;ExcessHet=6.9897;FS=1.528;MQ=58.59;MQRankSum=-3.723e+00;NEGATIVE_TRAIN_SITE;QD=2.52;ReadPosRankSum=0.090;SOR=0.871;VQSLOD=-2.465e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:229,66:295:99:1135,0,6351
chr1	145293469	rs6671324	G	C	600.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=355;ExcessHet=3.9794;FS=0.843;MQ=58.61;MQRankSum=-4.907e+00;NEGATIVE_TRAIN_SITE;QD=0.84;ReadPosRankSum=-2.150e-01;SOR=0.863;VQSLOD=-3.187e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:310,45:355:99:389,0,8738
chr1	145293490	rs6671335	G	C	6489.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022e+00;DB;DP=374;ExcessHet=6.9897;FS=0.000;MQ=58.43;MQRankSum=-7.382e+00;QD=5.52;ReadPosRankSum=0.901;SOR=0.687;VQSLOD=-4.832e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:287,87:374:99:0|1:145293490_G_C:2748,0,11687:145293490
chr1	145293498	rs4409714	G	C	6324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532e+00;DB;DP=370;ExcessHet=6.9897;FS=0.000;MQ=58.19;MQRankSum=-7.316e+00;QD=5.37;ReadPosRankSum=0.554;SOR=0.726;VQSLOD=-4.695e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:285,85:370:99:0|1:145293490_G_C:2681,0,11517:145293490
chr1	145293510	rs4356110	C	G	4084.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.260e-01;DB;DP=364;ExcessHet=6.9897;FS=0.000;MQ=57.82;MQRankSum=-6.167e+00;QD=3.42;ReadPosRankSum=0.058;SOR=0.653;VQSLOD=-3.944e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:281,83:364:99:1541,0,8705
chr1	145293515	rs12565078	A	G	4825.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=360;ExcessHet=6.9897;FS=0.000;MQ=57.68;MQRankSum=3.96;NEGATIVE_TRAIN_SITE;QD=4.06;ReadPosRankSum=-2.740e-01;SOR=0.697;VQSLOD=-2.583e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:320,40:360:99:147,0,10252
chr1	145293667	rs6689039	T	G	1624.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=161;ExcessHet=6.9897;FS=1.710;MQ=46.11;MQRankSum=-2.457e+00;QD=3.33;ReadPosRankSum=0.669;SOR=0.540;VQSLOD=-4.102e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,38:161:99:821,0,3356
chr1	145293692	rs7526143	G	A	1244.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=113;ExcessHet=6.9897;FS=0.738;MQ=45.56;MQRankSum=0.380;QD=3.50;ReadPosRankSum=1.14;SOR=0.808;VQSLOD=-4.414e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,19:113:99:283,0,2832
chr1	145293744	.	G	A	605.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.655e+00;DP=36;ExcessHet=6.9897;FS=0.000;MQ=53.57;MQRankSum=-4.420e+00;NEGATIVE_TRAIN_SITE;QD=4.42;ReadPosRankSum=0.595;SOR=0.052;VQSLOD=-3.916e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,6:36:99:133,0,1156
chr1	145295227	rs79903415	T	C	323.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=7;ExcessHet=6.9897;FS=3.078;MQ=46.60;MQRankSum=-2.100e+00;QD=12.46;ReadPosRankSum=0.319;SOR=2.030;VQSLOD=-2.942e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:92:118,0,92
chr1	145296207	rs71246524	T	C	1324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=44;ExcessHet=6.9897;FS=0.000;MQ=56.07;MQRankSum=-4.678e+00;NEGATIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=1.18;SOR=0.219;VQSLOD=-4.119e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,9:44:99:225,0,1195
chr1	145296268	rs4996271	C	T	2490.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.560e-01;DB;DP=109;ExcessHet=6.9897;FS=9.492;MQ=54.66;MQRankSum=-5.988e+00;QD=8.47;ReadPosRankSum=0.547;SOR=0.346;VQSLOD=-3.115e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,57:109:99:1498,0,1026
chr1	145296478	rs6663523	G	T	7359.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753e+00;DB;DP=220;ExcessHet=6.9897;FS=1.738;MQ=46.58;MQRankSum=-3.173e+00;QD=13.21;ReadPosRankSum=-9.370e-01;SOR=0.821;VQSLOD=-3.724e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,99:220:99:2271,0,3144
chr1	145296682	rs4068118	C	A	37.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622e+00;DB;DP=31;ExcessHet=3.9794;FS=7.314;MQ=42.57;MQRankSum=-1.906e+00;QD=0.51;ReadPosRankSum=0.737;SOR=0.011;VQSLOD=-3.331e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,4:31:21:21,0,1009
chr1	145297400	rs4068105	G	A	1339.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=38.39;MQRankSum=-4.101e+00;QD=18.36;ReadPosRankSum=-7.060e-01;SOR=1.179;VQSLOD=-5.091e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:197,0,285
chr1	145297788	rs55732260	G	A	1559.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.861e+00;DB;DP=240;ExcessHet=3.0103;FS=0.639;MQ=58.37;MQRankSum=3.42;NEGATIVE_TRAIN_SITE;QD=6.50;ReadPosRankSum=0.336;SOR=0.760;VQSLOD=-1.679e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:173,67:240:99:1568,0,5274
chr1	145297817	rs4068088	G	C	7857.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.76;DB;DP=164;ExcessHet=6.9897;FS=0.000;MQ=56.68;MQRankSum=-3.959e+00;NEGATIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-3.950e-01;SOR=0.704;VQSLOD=-2.663e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:89,75:164:99:2354,0,2838
chr1	145297890	rs4068089	G	A	2131.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.858e+00;DB;DP=41;ExcessHet=6.9897;FS=0.000;MQ=48.48;MQRankSum=-5.303e+00;QD=20.90;ReadPosRankSum=-8.530e-01;SOR=0.483;VQSLOD=-3.607e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:688,0,722
chr1	145298070	rs12068486	G	A	1078.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.41;DB;DP=43;ExcessHet=6.9897;FS=4.917;MQ=42.68;MQRankSum=-1.125e+00;QD=7.01;ReadPosRankSum=-7.420e-01;SOR=0.145;VQSLOD=-2.986e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,8:43:99:125,0,1077
chr1	145298095	rs12127411	C	A	277.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.010e-01;DB;DP=62;ExcessHet=6.9897;FS=3.378;MQ=37.69;MQRankSum=-1.579e+00;QD=1.31;ReadPosRankSum=1.46;SOR=0.105;VQSLOD=-4.851e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,11:62:99:175,0,1753
chr1	145298473	rs28702950	A	G	285.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280e-01;DB;DP=25;ExcessHet=3.9794;FS=9.760;MQ=49.35;MQRankSum=0.419;QD=4.67;ReadPosRankSum=1.72;SOR=0.074;VQSLOD=-2.220e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,6:25:99:110,0,594
chr1	145298604	rs608262	T	C	141.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=55.40;MQRankSum=-5.330e-01;NEGATIVE_TRAIN_SITE;QD=2.90;ReadPosRankSum=0.00;SOR=0.034;VQSLOD=-2.987e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:52:52,0,180
chr1	145301470	rs199949170	A	G	48.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=38.49;MQRankSum=-1.930e+00;QD=6.07;ReadPosRankSum=0.992;SOR=0.307;VQSLOD=-5.231e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:56:56,0,167
chr1	145301651	rs202030598	T	C	68.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.03;DB;DP=163;ExcessHet=3.0103;FS=6.283;MQ=48.32;MQRankSum=-2.791e+00;QD=0.42;ReadPosRankSum=-3.760e-01;SOR=1.762;VQSLOD=-3.726e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,15:163:77:77,0,4134
chr1	145301697	rs75611366	C	T	5123.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.988e+00;DB;DP=284;ExcessHet=6.9897;FS=1.162;MQ=51.74;MQRankSum=-1.250e+00;NEGATIVE_TRAIN_SITE;QD=6.85;ReadPosRankSum=1.66;SOR=0.595;VQSLOD=-3.516e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:163,121:284:99:2407,0,4185
chr1	145301793	rs75332562	A	G	7644.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.740e-01;DB;DP=263;ExcessHet=6.9897;FS=0.555;MQ=50.07;MQRankSum=-3.581e+00;NEGATIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-2.434e+00;SOR=0.771;VQSLOD=-3.920e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:175,88:263:99:0|1:145301793_A_G:3021,0,7375:145301793
chr1	145301802	rs6690575	C	G	7305.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DB;DP=250;ExcessHet=6.9897;FS=0.000;MQ=49.38;MQRankSum=-3.488e+00;QD=11.54;ReadPosRankSum=-2.046e+00;SOR=0.720;VQSLOD=-3.802e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:172,78:250:99:0|1:145301793_A_G:2782,0,7319:145301793
chr1	145301831	rs201470840	A	G	793.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=187;ExcessHet=3.0103;FS=11.501;MQ=47.08;MQRankSum=-9.000e-01;QD=4.24;ReadPosRankSum=-2.492e+00;SOR=1.705;VQSLOD=-5.060e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:155,32:187:99:0|1:145301831_A_G:802,0,6934:145301831
chr1	145301853	rs61814641	C	G	6420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.22;DB;DP=131;ExcessHet=6.9897;FS=0.000;MQ=44.64;MQRankSum=-8.014e+00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=-6.130e-01;SOR=0.680;VQSLOD=-3.415e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,67:131:99:2125,0,1613
chr1	145301887	rs6683593	G	A	3695.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=100;ExcessHet=6.9897;FS=4.965;MQ=44.93;MQRankSum=-3.406e+00;QD=11.70;ReadPosRankSum=-6.300e-01;SOR=0.469;VQSLOD=-2.798e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,26:100:99:868,0,3190
chr1	145301907	rs6697832	A	C	3930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=96;ExcessHet=6.9897;FS=2.828;MQ=46.19;MQRankSum=-3.321e+00;QD=13.24;ReadPosRankSum=-1.046e+00;SOR=0.533;VQSLOD=-3.453e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,30:96:99:985,0,2746
chr1	145302047	rs3979917	G	T	591.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=54.19;MQRankSum=-2.174e+00;NEGATIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-8.030e-01;SOR=0.293;VQSLOD=-3.048e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:148,0,419
chr1	145302505	rs74657263	G	C	3728.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=44.57;QD=30.28;SOR=5.323;VQSLOD=-5.120e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1238,108,0
chr1	145302704	rs141935360	A	G	1002.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=86;ExcessHet=6.9897;FS=2.734;MQ=47.80;MQRankSum=-6.399e+00;QD=3.89;ReadPosRankSum=0.113;SOR=0.877;VQSLOD=-4.800e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,10:86:56:56,0,2231
chr1	145304153	rs79958378	A	G	1218.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308e+00;DB;DP=50;ExcessHet=6.9897;FS=3.951;MQ=48.27;MQRankSum=-3.373e+00;QD=6.62;ReadPosRankSum=0.189;SOR=1.218;VQSLOD=-2.976e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,16:50:99:375,0,994
chr1	145304180	rs76221302	G	T	743.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=29;ExcessHet=6.9897;FS=1.723;MQ=47.56;MQRankSum=-2.046e+00;QD=6.00;ReadPosRankSum=-1.710e-01;SOR=1.085;VQSLOD=-3.630e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,8:29:99:172,0,679
chr1	145304787	rs71256269	G	T	1731.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.44;DB;DP=52;ExcessHet=6.9897;FS=1.090;MQ=51.42;MQRankSum=-6.774e+00;QD=8.49;ReadPosRankSum=0.264;SOR=0.874;VQSLOD=-5.029e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,13:52:99:285,0,1244
chr1	145310197	rs7554921	C	T	4018.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.438e+00;DB;DP=60;ExcessHet=6.9897;FS=13.999;MQ=50.84;MQRankSum=-5.885e+00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=1.09;SOR=0.234;VQSLOD=-1.853e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,40:60:99:1087,0,569
chr1	145310282	rs10910795	C	T	1094.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.940e-01;DB;DP=30;ExcessHet=6.9897;FS=8.887;MQ=53.45;MQRankSum=0.065;NEGATIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.081;SOR=0.191;VQSLOD=-1.564e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:277,0,717
chr1	145310283	rs7546107	G	A	855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=53.40;MQRankSum=-2.152e+00;NEGATIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=1.44;SOR=0.677;VQSLOD=-3.500e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:278,0,631
chr1	145310313	.	G	A	224.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.694;DP=17;ExcessHet=3.9794;FS=1.778;MQ=49.99;MQRankSum=0.725;NEGATIVE_TRAIN_SITE;QD=4.87;ReadPosRankSum=0.672;SOR=1.022;VQSLOD=-3.489e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,2:17:29:29,0,454
chr1	145310932	rs142756325	C	A	953.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=43.70;MQRankSum=-3.207e+00;QD=10.60;ReadPosRankSum=-1.800e-02;SOR=0.536;VQSLOD=-4.125e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:212,0,422
chr1	145310983	rs116247129	G	C	2953.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e+00;DB;DP=47;ExcessHet=6.9897;FS=0.000;MQ=52.41;MQRankSum=-2.750e+00;NEGATIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-9.820e-01;SOR=0.668;VQSLOD=-3.205e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,30:47:99:943,0,502
chr1	145311439	.	A	C	121.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DP=15;ExcessHet=3.0103;FS=0.000;MQ=51.85;MQRankSum=0.071;NEGATIVE_TRAIN_SITE;QD=8.08;ReadPosRankSum=-1.568e+00;SOR=0.602;VQSLOD=-3.544e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,4:15:99:1|0:145311423_T_C:130,0,361:145311423
chr1	145311785	rs61816394	C	G	336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=75;ExcessHet=3.0103;FS=2.502;MQ=52.72;MQRankSum=-6.391e+00;QD=4.48;ReadPosRankSum=-1.080e+00;SOR=1.052;VQSLOD=-4.703e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,16:75:99:345,0,1624
chr1	145311828	rs12135693	C	G	16357.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=50.15;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.34;SOR=1.169;VQSLOD=0.589;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4239,393,0
chr1	145312220	rs61816395	A	G	67.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=51.39;NEGATIVE_TRAIN_SITE;QD=33.51;SOR=2.303;VQSLOD=-1.355e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	145312597	rs61816397	T	C	192.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=40.79;MQRankSum=-1.450e+00;QD=5.65;ReadPosRankSum=-2.210e-01;SOR=0.610;VQSLOD=-5.092e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,11:34:99:201,0,694
chr1	145323757	rs149367355	A	T	9898.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.389e+00;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=39.78;MQRankSum=-6.734e+00;QD=27.65;ReadPosRankSum=-9.460e-01;SOR=0.741;VQSLOD=-5.125e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3816,374,0
chr1	145354129	.	C	T	554.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DP=44;ExcessHet=3.9794;FS=0.000;MQ=46.46;MQRankSum=2.51;QD=4.66;ReadPosRankSum=0.784;SOR=0.640;VQSLOD=-4.657e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,13:44:99:412,0,1598
chr1	145355624	rs142055197	C	T	44.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025e+00;DB;DP=9;ExcessHet=3.9794;FS=8.129;MQ=48.15;MQRankSum=-9.670e-01;QD=2.97;ReadPosRankSum=1.38;SOR=0.033;VQSLOD=-2.254e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:22:22,0,188
chr1	145360608	rs183933394	T	A	58.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=41.06;QD=19.54;SOR=1.179;VQSLOD=-4.915e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:74,9,0
chr1	145360624	rs189250898	G	A	42.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=46.52;QD=21.24;SOR=0.693;VQSLOD=-3.525e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chr1	145360656	.	C	T	30.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=3.0103;FS=0.000;MQ=46.52;MQRankSum=0.674;QD=15.13;ReadPosRankSum=0.674;SOR=1.447;VQSLOD=-3.106e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:145360649_T_C:39,0,39:145360649
chr1	145360658	.	T	G	30.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=3.0103;FS=0.000;MQ=46.52;MQRankSum=0.674;QD=15.13;ReadPosRankSum=0.674;SOR=1.447;VQSLOD=-3.106e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:145360649_T_C:39,0,39:145360649
chr1	145366463	rs61813417	C	T	111.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=47.86;MQRankSum=-2.226e+00;QD=2.66;ReadPosRankSum=0.574;SOR=0.673;VQSLOD=-3.993e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:36:36,0,320
chr1	145367014	rs3010127	G	A	219.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=44.91;MQRankSum=0.852;QD=5.35;ReadPosRankSum=-4.370e-01;SOR=0.871;VQSLOD=-4.641e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:177,0,272
chr1	145367080	rs138242037	A	G	943.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=26;ExcessHet=6.9897;FS=10.539;MQ=53.39;MQRankSum=-6.950e-01;NEGATIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.477;SOR=1.058;VQSLOD=-2.066e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:248,0,440
chr1	145367083	rs10910796	G	C	400.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=26;ExcessHet=6.9897;FS=3.654;MQ=53.59;MQRankSum=0.090;NEGATIVE_TRAIN_SITE;QD=4.41;ReadPosRankSum=-7.730e-01;SOR=0.993;VQSLOD=-2.674e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,3:26:46:46,0,818
chr1	145367094	rs3010128	C	T	498.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=54.77;MQRankSum=0.885;NEGATIVE_TRAIN_SITE;QD=5.14;ReadPosRankSum=-1.058e+00;SOR=0.618;VQSLOD=-3.445e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,4:27:49:49,0,600
chr1	145367178	rs3010129	T	G	705.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e-01;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=58.54;MQRankSum=-1.790e+00;QD=8.40;ReadPosRankSum=0.899;SOR=0.652;VQSLOD=-1.183e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,6:20:99:123,0,376
chr1	145367657	rs147722843	T	G	120.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=46.25;MQRankSum=-1.969e+00;QD=9.28;ReadPosRankSum=0.375;SOR=0.527;VQSLOD=-3.721e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:129,0,306
chr1	145368837	rs7414890	C	A	2031.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.397e+00;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=50.00;MQRankSum=0.349;NEGATIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.098;SOR=0.936;VQSLOD=-3.024e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:511,0,439
chr1	145438578	rs833392	C	A	503.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.40;SOR=3.611;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:145438578_C_A:176,12,0:145438578
chr1	145438581	rs9245	C	A	160.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.674;SOR=0.892;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:67:0|1:145438578_C_A:102,0,67:145438578
chr1	145477223	rs113404160	G	A	450.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=31;ExcessHet=3.0103;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.020;SOR=0.856;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:459,0,346
chr1	145477257	rs2282013	T	C	445.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.190e-01;DB;DP=28;ExcessHet=3.9794;FS=1.216;MQ=60.00;MQRankSum=0.00;QD=10.86;ReadPosRankSum=0.092;SOR=1.013;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:318,0,365
chr1	145507826	rs872786	A	T	3781.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DB;DP=93;ExcessHet=6.9897;FS=1.415;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=1.03;SOR=0.807;VQSLOD=6.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,45:93:99:1173,0,1336
chr1	145515057	rs148070621	CA	C	88.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.77;ReadPosRankSum=-7.500e-01;SOR=0.573;VQSLOD=5.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,5:24:60:60,0,419
chr1	145517063	rs10910821	G	A	3905.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.13;SOR=5.507;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1167,84,0
chr1	145531980	rs4384171	T	C	8085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=0.959;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2558,233,0
chr1	145532010	.	C	CTGTG	2123.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DP=54;ExcessHet=6.9897;FS=1.191;MQ=59.51;MQRankSum=-1.009e+00;QD=12.87;ReadPosRankSum=-7.860e-01;SOR=0.804;VQSLOD=0.549;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,19:54:99:737,0,963
chr1	145532549	rs1328584	T	C	12982.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=0.896;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3646,354,0
chr1	145535611	rs4970851	T	G	2838.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=21;ExcessHet=3.0103;FS=2.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=-8.530e-01;SOR=0.357;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:289,0,352
chr1	145535921	rs2274617	T	C	17731.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DB;DP=176;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=2.72;SOR=0.691;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,88:176:99:2213,0,2192
chr1	145538664	rs1109216	A	G	11645.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=0.096;SOR=0.588;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,66:117:99:1864,0,1218
chr1	145538871	rs61814243	A	G	1295.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=93;ExcessHet=3.0103;FS=5.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.331;SOR=1.315;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,45:93:99:1304,0,1275
chr1	145555653	rs6424379	C	T	18944.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.460;DB;DP=203;ExcessHet=3.0103;FS=0.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=0.055;SOR=0.882;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,203:203:99:6723,609,0
chr1	145558565	rs11801520	C	G	7323.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.05;SOR=2.362;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2267,186,0
chr1	145559918	.	CA	C	57.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DP=13;ExcessHet=3.9794;FS=7.132;MQ=60.00;MQRankSum=0.00;QD=1.84;ReadPosRankSum=0.757;SOR=0.013;VQSLOD=3.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,3:13:41:41,0,227
chr1	145561008	rs41315699	G	T	752.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.361;SOR=0.649;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,25:48:99:761,0,659
chr1	145561594	rs6670984	C	T	12421.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=206;ExcessHet=3.9794;FS=0.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-4.700e-02;SOR=0.739;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,206:206:99:6528,616,0
chr1	145562881	rs10910824	T	C	3456.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=51;ExcessHet=3.9794;FS=4.205;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=1.53;SOR=0.888;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1841,153,0
chr1	145566535	rs1819347	C	T	1821.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.95;ReadPosRankSum=0.794;SOR=0.867;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:702,57,0
chr1	145578943	.	G	C	1945.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DP=170;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.44;ReadPosRankSum=-2.600e-01;SOR=0.713;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,73:170:99:1954,0,2443
chr1	145585317	rs4128488	A	G	10742.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.69;SOR=1.581;VQSLOD=5.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3481,338,0
chr1	145586403	rs1050057	G	T	552.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.55;SOR=4.174;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	145586780	rs10910829	T	C	2367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=205;ExcessHet=3.0103;FS=3.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-1.398e+00;SOR=0.908;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,92:205:99:2376,0,2952
chr1	145588536	rs9286836	C	T	17408.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.420e-01;DB;DP=205;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=0.390;SOR=0.787;VQSLOD=6.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,205:205:99:6794,616,0
chr1	145589491	rs1887804	A	T	3227.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.48;SOR=2.354;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1051,90,0
chr1	145589516	rs1887803	G	C	1440.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.770;DB;DP=25;ExcessHet=3.9794;FS=4.895;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-6.400e-02;SOR=0.317;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:785,75,0
chr1	145589666	rs1887802	C	A	375.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.26;ReadPosRankSum=-2.530e-01;SOR=2.670;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	145594799	rs1887806	C	T	1048.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.040e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=-3.490e-01;SOR=1.112;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:510,39,0
chr1	145595423	rs913513	G	A	313.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.31;ReadPosRankSum=0.967;SOR=1.022;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	145597116	rs9728311	C	T	6670.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.000;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2012,182,0
chr1	145598459	rs9729715	T	C	7505.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.35;SOR=1.129;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2265,198,0
chr1	145601861	rs9286837	G	A	6917.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=2.005;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1998,177,0
chr1	145706564	.	CA	C	397.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290e-01;DP=35;ExcessHet=3.9794;FS=0.924;MQ=59.95;MQRankSum=0.00;QD=5.68;ReadPosRankSum=0.544;SOR=0.854;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,9:35:99:146,0,298
chr1	146013385	rs200674378	A	T	117.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=50.26;MQRankSum=-3.550e-01;NEGATIVE_TRAIN_SITE;QD=4.04;ReadPosRankSum=1.33;SOR=0.478;VQSLOD=-3.571e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,5:29:99:126,0,877
chr1	146013577	rs145151412	A	C	8580.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=182;ExcessHet=6.9897;FS=1.132;MQ=53.02;MQRankSum=-2.131e+00;NEGATIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.565;SOR=0.834;VQSLOD=-2.952e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,96:182:99:2418,0,1991
chr1	146214922	.	GC	G	88.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DP=5;ExcessHet=3.0103;FS=0.000;MQ=32.45;MQRankSum=1.04;QD=17.65;ReadPosRankSum=1.65;SOR=1.022;VQSLOD=0.365;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:60:97,0,60
chr1	146215111	rs373124782	G	A	17855.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127e+00;DB;DP=233;ExcessHet=3.9794;FS=2.837;MQ=41.48;MQRankSum=-3.770e+00;QD=28.03;ReadPosRankSum=-8.730e-01;SOR=0.936;VQSLOD=-4.264e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:85,148:233:99:0|1:146215111_G_A:5991,0,3129:146215111
chr1	146215113	rs377681920	G	A	17855.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809e+00;DB;DP=235;ExcessHet=3.9794;FS=2.821;MQ=41.83;MQRankSum=-3.325e+00;QD=27.86;ReadPosRankSum=-1.435e+00;SOR=0.938;VQSLOD=-4.324e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:86,149:235:99:0|1:146215111_G_A:5991,0,3129:146215111
chr1	146215138	rs370516541	A	G	14418.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=301;ExcessHet=3.9794;FS=0.573;MQ=43.00;MQRankSum=-4.933e+00;QD=18.34;ReadPosRankSum=-2.090e-01;SOR=0.736;VQSLOD=-4.312e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,181:301:99:4444,0,2576
chr1	146215189	rs371388492	G	C	5904.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-01;DB;DP=299;ExcessHet=3.9794;FS=0.533;MQ=42.61;MQRankSum=-4.412e+00;QD=9.00;ReadPosRankSum=1.93;SOR=0.627;VQSLOD=-4.861e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:215,84:299:99:1693,0,5686
chr1	146215223	.	G	C	21140.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.265e+00;DP=301;ExcessHet=3.9794;FS=4.220;MQ=41.19;MQRankSum=-3.802e+00;QD=25.17;ReadPosRankSum=-1.017e+00;SOR=0.711;VQSLOD=-3.864e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:130,171:301:99:0|1:146215223_G_C:6685,0,4881:146215223
chr1	146215232	.	A	C	20757.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DP=307;ExcessHet=3.9794;FS=4.169;MQ=41.12;MQRankSum=-3.395e+00;QD=24.77;ReadPosRankSum=-6.030e-01;SOR=0.820;VQSLOD=-3.898e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:137,170:307:99:0|1:146215223_G_C:6638,0,5005:146215223
chr1	146227919	.	GA	G,AA	1572.83	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.760e-01;DP=94;ExcessHet=0.7918;FS=0.981;MQ=27.60;MQRankSum=-3.201e+00;QD=16.73;ReadPosRankSum=-1.080e-01;SOR=0.867;VQSLOD=0.108;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:19,52,23:94:99:1590,103,908,1279,0,2152
chr1	146248831	.	T	C	91.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028e+00;DP=26;ExcessHet=3.0103;FS=6.608;MQ=36.23;MQRankSum=1.51;QD=3.52;ReadPosRankSum=-3.910e-01;SOR=0.067;VQSLOD=-5.208e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,4:26:99:0|1:146248831_T_C:99,0,1253:146248831
chr1	146248832	.	A	C	85.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.343e+00;DP=26;ExcessHet=3.0103;FS=6.608;MQ=36.23;MQRankSum=1.51;QD=3.29;ReadPosRankSum=-3.550e-01;SOR=0.067;VQSLOD=-5.197e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,4:26:93:0|1:146248831_T_C:93,0,1346:146248831
chr1	146248834	rs374980136	C	T	85.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.705e+00;DB;DP=29;ExcessHet=3.0103;FS=6.232;MQ=36.85;MQRankSum=1.20;QD=2.95;ReadPosRankSum=0.253;SOR=0.078;VQSLOD=-4.745e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,4:29:93:0|1:146248831_T_C:93,0,1346:146248831
chr1	146248841	rs369553922	G	T	82.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596e+00;DB;DP=30;ExcessHet=3.0103;FS=5.474;MQ=37.19;MQRankSum=1.05;QD=2.75;ReadPosRankSum=0.916;SOR=0.105;VQSLOD=-4.588e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,4:30:90:0|1:146248831_T_C:90,0,1368:146248831
chr1	146252937	rs375965852	A	G	40.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.880e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=56.25;MQRankSum=-3.381e+00;NEGATIVE_TRAIN_SITE;QD=0.97;ReadPosRankSum=-3.430e-01;SOR=0.223;VQSLOD=-3.925e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,4:42:48:0|1:146252937_A_G:48,0,2597:146252937
chr1	146252941	rs375898259	C	T	39.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914e+00;DB;DP=44;ExcessHet=3.0103;FS=2.471;MQ=57.00;MQRankSum=-3.736e+00;NEGATIVE_TRAIN_SITE;QD=0.90;ReadPosRankSum=0.102;SOR=0.200;VQSLOD=-3.392e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,4:44:48:0|1:146252937_A_G:48,0,2602:146252937
chr1	146395447	.	A	G	1649.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.907e+00;DP=54;ExcessHet=6.9897;FS=12.806;MQ=43.73;MQRankSum=-2.963e+00;QD=6.65;ReadPosRankSum=0.010;SOR=0.285;VQSLOD=-4.629e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,17:54:99:330,0,1079
chr1	146395465	.	T	A	127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.737e+00;DP=65;ExcessHet=3.0103;FS=1.167;MQ=43.29;MQRankSum=-1.750e-01;QD=1.96;ReadPosRankSum=0.072;SOR=0.462;VQSLOD=-4.799e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,14:65:99:136,0,1480
chr1	146395558	.	G	A	759.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DP=63;ExcessHet=3.9794;FS=0.000;MQ=42.04;MQRankSum=-8.610e-01;QD=5.42;ReadPosRankSum=1.38;SOR=0.578;VQSLOD=-4.786e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,15:63:99:349,0,1392
chr1	146397300	rs370305527	G	A	1793.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-02;DB;DP=78;ExcessHet=3.9794;FS=4.150;MQ=53.31;MQRankSum=-8.870e-01;NEGATIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-6.010e-01;SOR=1.051;VQSLOD=-2.033e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,37:78:99:918,0,1037
chr1	146397489	.	G	T	2685.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DP=101;ExcessHet=3.9794;FS=2.299;MQ=58.88;MQRankSum=0.122;QD=11.83;ReadPosRankSum=0.541;SOR=0.886;VQSLOD=-1.159e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,53:101:99:1361,0,1168
chr1	146398111	.	G	C	406.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044e+00;DP=15;ExcessHet=6.9897;FS=0.000;MQ=40.62;MQRankSum=-9.680e-01;QD=8.14;ReadPosRankSum=0.368;SOR=0.212;VQSLOD=-4.608e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:120,0,335
chr1	146398203	rs376385375	A	G	4756.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=65;ExcessHet=6.9897;FS=2.480;MQ=38.82;MQRankSum=-3.455e+00;QD=17.95;ReadPosRankSum=0.625;SOR=0.909;VQSLOD=-4.971e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,29:65:99:0|1:146398203_A_G:1093,0,1994:146398203
chr1	146398208	rs371150699	A	G	4863.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107e+00;DB;DP=65;ExcessHet=6.9897;FS=0.000;MQ=38.81;MQRankSum=-3.549e+00;QD=17.31;ReadPosRankSum=0.113;SOR=0.693;VQSLOD=-5.054e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,28:65:99:0|1:146398203_A_G:1054,0,1997:146398203
chr1	146398579	.	T	C	342.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730e-01;DP=22;ExcessHet=3.9794;FS=0.000;MQ=51.70;MQRankSum=-4.087e+00;NEGATIVE_TRAIN_SITE;QD=7.60;ReadPosRankSum=2.00;SOR=0.892;VQSLOD=-4.192e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:268,0,282
chr1	146398651	.	G	A	227.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DP=8;ExcessHet=3.9794;FS=0.000;MQ=51.27;MQRankSum=-1.611e+00;NEGATIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-8.760e-01;SOR=0.818;VQSLOD=-3.036e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:56:191,0,56
chr1	146399778	.	A	G	158.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DP=24;ExcessHet=3.9794;FS=2.416;MQ=43.85;MQRankSum=-2.473e+00;QD=3.44;ReadPosRankSum=1.62;SOR=1.561;VQSLOD=-3.909e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,2:24:9:0|1:146399778_A_G:9,0,1085:146399778
chr1	146399787	.	A	G	175.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=18;ExcessHet=3.9794;FS=0.000;MQ=41.69;MQRankSum=-2.326e+00;QD=4.75;ReadPosRankSum=1.62;SOR=0.836;VQSLOD=-4.892e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,2:18:21:0|1:146399778_A_G:21,0,957:146399778
chr1	146465784	rs139773774	C	G	450.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.7918;FS=0.000;MQ=44.48;QD=33.55;SOR=3.611;VQSLOD=-4.414e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:465,36,0
chr1	146491057	rs11240072	C	A	152.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=10;ExcessHet=3.9794;FS=4.409;MQ=48.36;MQRankSum=-2.700e-01;POSITIVE_TRAIN_SITE;QD=6.09;ReadPosRankSum=-1.113e+00;SOR=1.863;VQSLOD=-1.144e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:127,0,136
chr1	146491095	rs11240073	A	G	658.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=17;ExcessHet=3.0103;FS=1.218;MQ=47.20;MQRankSum=-2.560e+00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-9.550e-01;SOR=1.051;VQSLOD=-1.736e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:480,51,0
chr1	146493279	rs3929735	C	T	3214.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.99;DB;DP=21;ExcessHet=3.0103;FS=4.624;MQ=43.78;MQRankSum=-5.301e+00;QD=32.15;ReadPosRankSum=1.42;SOR=1.266;VQSLOD=-3.614e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:146493279_C_T:945,63,0:146493279
chr1	146493280	rs3929736	A	G	3214.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.67;DB;DP=21;ExcessHet=3.0103;FS=4.540;MQ=43.77;MQRankSum=-5.301e+00;QD=31.52;ReadPosRankSum=1.40;SOR=1.233;VQSLOD=-3.598e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:146493279_C_T:945,63,0:146493279
chr1	146495506	rs4245681	T	G	962.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.50;SOR=4.892;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:356,27,0
chr1	146496260	rs7534094	A	T	366.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.906;SOR=0.616;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:192,0,248
chr1	146514764	rs111231420	C	A	496.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.641e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=1.58;SOR=1.051;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:505,0,359
chr1	146584161	rs1813002	C	G	1385.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.87;DB;DP=18;ExcessHet=3.9794;FS=4.224;MQ=60.00;MQRankSum=0.00;QD=22.35;ReadPosRankSum=0.297;SOR=0.311;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:676,54,0
chr1	146584316	rs61838947	T	A	1346.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.900e-01;DB;DP=29;ExcessHet=1.5490;FS=3.145;MQ=55.03;MQRankSum=0.361;NEGATIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=-2.430e-01;SOR=1.091;VQSLOD=-2.098e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:908,87,0
chr1	146584337	rs76757751	G	A	1846.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.012;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=54.14;MQRankSum=0.662;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-5.560e-01;SOR=0.706;VQSLOD=-1.657e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:899,84,0
chr1	146586670	rs113889437	T	G	705.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=46.49;QD=33.20;SOR=5.421;VQSLOD=-2.862e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:24:1|1:146586670_T_G:360,24,0:146586670
chr1	146586676	rs150062329	T	C	885.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=49.58;NEGATIVE_TRAIN_SITE;QD=26.88;SOR=3.716;VQSLOD=-9.934e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:146586670_T_G:450,30,0:146586670
chr1	146586677	rs147318064	G	A	885.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=49.58;NEGATIVE_TRAIN_SITE;QD=29.70;SOR=3.716;VQSLOD=-4.245e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:146586670_T_G:450,30,0:146586670
chr1	146586688	rs149248152	G	A	802.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=51.91;QD=34.90;SOR=2.833;VQSLOD=1.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:353,27,0
chr1	146586703	rs12095014	G	T	1323.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=53.68;QD=31.54;SOR=2.226;VQSLOD=1.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:45:1|1:146586703_G_T:663,45,0:146586703
chr1	146586705	rs12060049	A	C	1323.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=53.90;QD=32.32;SOR=2.303;VQSLOD=2.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:146586703_G_T:663,45,0:146586703
chr1	146632967	rs11371579	T	TA	259.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
chr1	146633023	rs202047470	CAGTT	C	66.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,120
chr1	146633933	rs1036852	G	A	3868.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.441;DB;DP=39;ExcessHet=3.0103;FS=1.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.45;ReadPosRankSum=0.462;SOR=0.546;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1252,115,0
chr1	146637944	rs10579069	CTCTG	C	664.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.080e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.66;ReadPosRankSum=-1.679e+00;SOR=1.022;VQSLOD=5.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	146639790	rs10751402	A	C	205.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=-6.740e-01;SOR=1.402;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	146643555	rs1348316	A	G	4843.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.950e-01;DB;DP=80;ExcessHet=3.0103;FS=0.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.22;ReadPosRankSum=1.25;SOR=0.764;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2388,240,0
chr1	146649623	.	C	A	1935.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220e+00;DP=125;ExcessHet=3.0103;FS=2.509;MQ=60.00;MQRankSum=0.00;QD=15.48;ReadPosRankSum=1.28;SOR=0.368;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,64:125:99:1944,0,1983
chr1	146656292	rs4950385	A	G	5321.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.44;DB;DP=73;ExcessHet=3.0103;FS=3.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=0.291;SOR=1.135;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2214,218,0
chr1	146672906	rs894469	C	T	8322.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=86;ExcessHet=3.0103;FS=1.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=2.93;SOR=0.554;VQSLOD=22.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2844,258,0
chr1	146673178	rs6683215	A	G	3527.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.94;SOR=4.735;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:954,75,0
chr1	146680262	rs2354433	A	G	3985.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.45;DB;DP=41;ExcessHet=3.0103;FS=2.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.66;ReadPosRankSum=1.16;SOR=1.190;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1591,123,0
chr1	146680705	rs114731320	G	A	264.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=19;ExcessHet=3.0103;FS=3.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-1.198e+00;SOR=2.115;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:273,0,334
chr1	146685121	rs1530336	G	A	2574.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.645;DB;DP=26;ExcessHet=3.0103;FS=7.991;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.76;ReadPosRankSum=-1.862e+00;SOR=1.552;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:824,78,0
chr1	146685288	rs1530335	T	C	507.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.85;ReadPosRankSum=0.598;SOR=2.448;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	146687250	rs1822312	A	T	1993.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=7.864;VQSLOD=24.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:209,18,0
chr1	146714255	rs1890040	A	G	381.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=1.87;SOR=0.507;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:115,0,293
chr1	146714392	rs1890042	G	T	5391.30	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.011;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.40;ReadPosRankSum=-1.020e-01;SOR=0.770;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1821,174,0
chr1	146724093	rs1890037	A	G	7000.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.21;SOR=1.533;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1961,159,0
chr1	146727388	rs17160051	G	T	286.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.602e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=1.15;SOR=0.976;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:207,18,0
chr1	146727763	rs1932978	G	A	347.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.59;ReadPosRankSum=-5.240e-01;SOR=2.494;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	146728162	rs61409326	T	TA	11520.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.37;SOR=1.417;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3248,262,0
chr1	146736092	rs4950315	C	T	1754.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.135;DB;DP=34;ExcessHet=1.5490;FS=0.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=0.073;SOR=0.850;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1155,102,0
chr1	146736137	rs36008075	A	G	580.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=44;ExcessHet=3.0103;FS=4.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.247;SOR=0.234;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:589,0,599
chr1	146737343	rs17356219	A	C	231.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.97;ReadPosRankSum=0.319;SOR=1.402;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr1	146740502	rs17356233	C	G	8486.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=200;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=1.46;SOR=0.691;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,199:200:99:5953,559,0
chr1	146740576	rs11576360	G	A	13827.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.756e+00;DB;DP=183;ExcessHet=3.0103;FS=1.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-9.270e-01;SOR=0.553;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,183:183:99:5753,548,0
chr1	146740827	rs6674796	A	G	1947.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=6.439;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:607,48,0
chr1	146747153	rs6680778	T	C	6947.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=1.728;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2804,243,0
chr1	146748072	rs7534963	A	G	811	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=6.184;VQSLOD=23.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	146751782	rs7547279	A	C	8532.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.94;SOR=0.979;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2681,240,0
chr1	146758285	rs147488881	TAC	T	253.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=2.303;VQSLOD=6.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	146759306	rs6703892	T	C	1250.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.755e+00;DB;DP=31;ExcessHet=1.5490;FS=1.239;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=0.163;SOR=0.518;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:988,93,0
chr1	146763438	rs10793659	A	G	2046.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.27;SOR=6.439;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:886,66,0
chr1	146763531	rs10793660	G	A	524.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.31;SOR=5.283;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	146765945	rs145661481	TTAC	T	663.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.210e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.94;ReadPosRankSum=-3.530e-01;SOR=0.551;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:540,36,0
chr1	146766069	rs71083827	C	CAT	17699.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.73;SOR=1.867;VQSLOD=5.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,99:99:99:4476,303,0
chr1	146767149	rs4950394	G	T	4855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=0.980;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1452,135,0
chr1	147083744	rs677977	C	T	2860.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.580e-01;DB;DP=46;ExcessHet=1.5490;FS=0.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=-1.489e+00;SOR=0.936;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:567,0,688
chr1	147087721	rs3737843	T	A	445.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=24;ExcessHet=3.0103;FS=10.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=0.00;SOR=2.985;VQSLOD=14.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:454,0,290
chr1	147091972	rs3820129	C	T	2111.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.630e-01;DB;DP=155;ExcessHet=3.0103;FS=0.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-7.890e-01;SOR=0.765;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,73:155:99:2120,0,2268
chr1	147093079	rs10622579	T	TAAAAG	2062.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.14;SOR=7.743;VQSLOD=7.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr1	147096794	rs867270	A	G	6913.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.89;SOR=1.975;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2157,198,0
chr1	147096828	rs946902	C	G	4733.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=2.780;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1315,114,0
chr1	147119273	rs1344	G	A	2609.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=77;ExcessHet=1.5490;FS=1.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=2.07;SOR=0.527;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,33:77:99:666,0,1008
chr1	147121977	rs6593795	C	T	7032.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=1.210;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1896,183,0
chr1	147124310	rs2153463	T	G	2267.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269e+00;DB;DP=41;ExcessHet=1.5490;FS=2.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=0.660;SOR=0.382;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,29:41:99:791,0,282
chr1	147131465	rs6674938	T	C	2641.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=36;ExcessHet=1.5490;FS=13.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=0.754;SOR=0.085;VQSLOD=14.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:616,0,428
chr1	147131501	rs34675044	A	T	919.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-1.104e+00;SOR=0.657;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,36:59:99:928,0,502
chr1	147131945	rs2275552	T	C	553.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=2.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=0.652;SOR=2.049;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:78:113,0,78
chr1	147230217	rs1692141	T	C	7438.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-01;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=-2.300e-01;SOR=0.674;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1160,0,1051
chr1	147231531	rs1692140	T	C	1251.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=6.804;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:263,18,0
chr1	147381397	rs150194431	G	GA	3490.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=59.67;MQRankSum=-1.810e-01;POSITIVE_TRAIN_SITE;QD=19.50;ReadPosRankSum=-1.620e-01;SOR=0.745;VQSLOD=2.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,41:57:68:950,0,68
chr1	147381444	rs1532399	A	C	3179.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.30;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=0.387;SOR=0.683;VQSLOD=6.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1267,111,0
chr1	147381558	rs2132397	G	A	601.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.09;ReadPosRankSum=1.37;SOR=2.531;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:234,18,0
chr1	147806559	rs10752439	C	T	5415.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.380e+00;DB;DP=67;ExcessHet=3.0103;FS=2.213;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=-9.330e-01;SOR=0.432;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2001,200,0
chr1	147806574	.	T	A	996.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DP=71;ExcessHet=3.0103;FS=0.934;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-5.120e-01;SOR=0.863;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,36:71:99:1005,0,854
chr1	147806874	rs2999607	G	C	3058.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.400e-02;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=0.207;SOR=1.358;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:147806874_G_C:1003,72,0:147806874
chr1	147806880	rs537191	T	C	3224.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.55;SOR=5.699;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:60:1|1:147806874_G_C:876,60,0:147806874
chr1	148004396	.	C	A	127.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430e+00;DP=14;ExcessHet=3.9794;FS=0.000;MQ=44.70;MQRankSum=-1.298e+00;QD=9.11;ReadPosRankSum=1.21;SOR=0.078;VQSLOD=-3.441e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,4:14:99:0|1:148004396_C_A:132,0,632:148004396
chr1	148004402	.	G	A	154.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.960e-01;DP=20;ExcessHet=3.9794;FS=0.000;MQ=46.52;MQRankSum=-1.311e+00;QD=7.71;ReadPosRankSum=1.52;SOR=0.362;VQSLOD=-3.691e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,4:20:99:0|1:148004396_C_A:117,0,882:148004396
chr1	148004407	.	G	C	142.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DP=22;ExcessHet=3.9794;FS=0.000;MQ=46.47;MQRankSum=-1.389e+00;QD=3.95;ReadPosRankSum=0.239;SOR=0.582;VQSLOD=-4.005e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,4:22:99:0|1:148004396_C_A:108,0,988:148004396
chr1	148004409	.	T	C	142.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DP=24;ExcessHet=3.9794;FS=0.000;MQ=47.76;MQRankSum=-1.493e+00;QD=3.65;ReadPosRankSum=0.340;SOR=0.609;VQSLOD=-3.867e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,4:24:99:0|1:148004396_C_A:108,0,988:148004396
chr1	148004440	rs61810197	C	A	2009.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=52.44;MQRankSum=5.00;QD=23.36;ReadPosRankSum=1.28;SOR=0.857;VQSLOD=-4.097e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:510,0,508
chr1	148004475	rs367648584	C	G	1097.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.93;DB;DP=54;ExcessHet=6.9897;FS=2.020;MQ=53.88;MQRankSum=-5.880e+00;QD=6.07;ReadPosRankSum=-2.089e+00;SOR=0.962;VQSLOD=-4.674e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,6:54:87:87,0,1460
chr1	148004548	rs79370452	T	C	1111.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.650e-01;DB;DP=160;ExcessHet=6.9897;FS=4.585;MQ=49.52;MQRankSum=-5.739e+00;QD=2.07;ReadPosRankSum=-3.273e+00;SOR=1.182;VQSLOD=-4.361e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,18:160:99:137,0,4146
chr1	148004567	rs79517418	C	A	2023.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597e+00;DB;DP=165;ExcessHet=6.9897;FS=0.817;MQ=47.57;MQRankSum=-5.831e+00;QD=3.43;ReadPosRankSum=-1.816e+00;SOR=0.556;VQSLOD=-5.004e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:144,21:165:99:0|1:148004567_C_A:452,0,6535:148004567
chr1	148004568	rs78765201	C	A	2025.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.890e-01;DB;DP=166;ExcessHet=6.9897;FS=1.723;MQ=47.52;MQRankSum=-5.831e+00;QD=3.42;ReadPosRankSum=-1.627e+00;SOR=0.541;VQSLOD=-4.875e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:144,22:166:99:0|1:148004567_C_A:452,0,6535:148004567
chr1	148004584	rs78822109	G	A	1991.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310e+00;DB;DP=196;ExcessHet=6.9897;FS=4.607;MQ=46.14;MQRankSum=-6.336e+00;QD=3.01;ReadPosRankSum=-1.722e+00;SOR=0.378;VQSLOD=-3.999e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:163,33:196:99:375,0,4669
chr1	148008760	.	G	C	47.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DP=89;ExcessHet=3.0103;FS=5.584;MQ=48.18;MQRankSum=1.00;QD=0.53;ReadPosRankSum=0.799;SOR=0.163;VQSLOD=-1.954e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,10:89:56:56,0,2224
chr1	148009349	rs141981140	A	G	857.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262e+00;DB;DP=677;ExcessHet=3.9794;FS=3.005;MQ=46.50;MQRankSum=2.77;QD=0.84;ReadPosRankSum=-3.400e-02;SOR=1.029;VQSLOD=-4.661e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:614,63:677:21:21,0,17464
chr1	148009510	.	G	A	3125.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312e+00;DP=614;ExcessHet=3.9794;FS=0.702;MQ=59.84;MQRankSum=1.46;QD=3.41;ReadPosRankSum=1.20;SOR=0.580;VQSLOD=-2.157e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:508,106:614:99:1315,0,14614
chr1	148009715	.	G	GGA	904.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DP=47;ExcessHet=3.9794;FS=5.986;MQ=57.64;MQRankSum=0.367;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=1.19;SOR=0.403;VQSLOD=0.120;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,9:47:99:196,0,1270
chr1	148009768	rs55678137	T	A	1681.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=38;ExcessHet=1.5490;FS=0.975;MQ=51.51;MQRankSum=-7.990e-01;NEGATIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=1.99;SOR=0.922;VQSLOD=-2.917e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,15:38:99:413,0,570
chr1	148009846	rs11289391	CA	C	1281.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.690e-01;DB;DP=54;ExcessHet=3.9794;FS=9.354;MQ=39.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=1.66;SOR=0.298;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,20:54:99:587,0,1109
chr1	148011200	rs200957807	T	G	283.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=43.31;MQRankSum=-1.403e+00;QD=8.09;ReadPosRankSum=0.112;SOR=0.207;VQSLOD=-3.959e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,4:20:59:59,0,558
chr1	148012280	rs80112025	G	A	133.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.650e-01;DB;DP=13;ExcessHet=3.0103;FS=2.522;MQ=42.54;MQRankSum=-1.368e+00;QD=10.25;ReadPosRankSum=-2.070e-01;SOR=0.204;VQSLOD=-3.835e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:141,0,200
chr1	148015876	rs61810765	C	T	1137.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178e+00;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=43.29;MQRankSum=1.31;QD=21.88;ReadPosRankSum=0.819;SOR=0.510;VQSLOD=-4.627e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,11:30:99:0|1:148015876_C_T:263,0,651:148015876
chr1	148015877	rs372418584	G	A	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=43.10;MQRankSum=-1.648e+00;QD=7.61;ReadPosRankSum=-1.087e+00;SOR=0.641;VQSLOD=-4.623e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,9:30:99:1|0:148015876_C_T:237,0,740:148015876
chr1	148021837	rs78623341	T	C	425.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=24;ExcessHet=6.9897;FS=1.764;MQ=53.71;MQRankSum=-2.823e+00;NEGATIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=0.405;SOR=1.013;VQSLOD=-3.339e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,3:24:63:0|1:148021837_T_C:63,0,1195:148021837
chr1	148021838	rs76181545	G	A	425.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=53.82;MQRankSum=-2.848e+00;NEGATIVE_TRAIN_SITE;QD=7.74;ReadPosRankSum=0.405;SOR=0.828;VQSLOD=-3.491e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,3:23:63:0|1:148021837_T_C:63,0,1195:148021837
chr1	148023403	rs201620940	G	A	1196.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.594e+00;DB;DP=27;ExcessHet=6.9897;FS=5.110;MQ=44.16;MQRankSum=0.399;QD=11.62;ReadPosRankSum=0.026;SOR=1.751;VQSLOD=-3.607e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:364,0,521
chr1	148023418	.	G	A	74.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DP=41;ExcessHet=6.9897;FS=4.445;MQ=46.57;MQRankSum=-3.081e+00;QD=0.52;ReadPosRankSum=0.343;SOR=1.595;VQSLOD=-3.654e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,4:41:11:11,0,1225
chr1	148023509	rs140737308	G	A	2390.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970e+00;DB;DP=86;ExcessHet=6.9897;FS=6.429;MQ=41.13;MQRankSum=1.53;QD=9.88;ReadPosRankSum=-8.670e-01;SOR=0.386;VQSLOD=-3.921e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,28:86:99:652,0,1982
chr1	148024964	rs61810799	A	G	3556.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=67;ExcessHet=1.5490;FS=4.126;MQ=43.02;MQRankSum=-7.462e+00;QD=23.87;ReadPosRankSum=-3.260e-01;SOR=1.227;VQSLOD=-4.086e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,32:67:99:939,0,985
chr1	148025108	rs184735478	A	T	218.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=47.85;MQRankSum=-2.245e+00;QD=6.84;ReadPosRankSum=0.100;SOR=0.160;VQSLOD=-3.308e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,2:15:45:0|1:148025108_A_T:45,0,1564:148025108
chr1	148025113	.	G	C	138.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DP=15;ExcessHet=3.9794;FS=0.000;MQ=47.70;MQRankSum=-1.732e+00;QD=5.54;ReadPosRankSum=0.984;SOR=0.078;VQSLOD=-3.252e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,2:15:42:0|1:148025108_A_T:42,0,1588:148025108
chr1	148025118	rs368762798	G	A	138.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=47.03;MQRankSum=-1.559e+00;QD=5.54;ReadPosRankSum=0.732;SOR=0.078;VQSLOD=-3.289e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:42:0|1:148025108_A_T:42,0,1588:148025108
chr1	148025606	rs78327296	C	T	4468.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478e+00;DB;DP=50;ExcessHet=3.9794;FS=3.775;MQ=43.87;MQRankSum=-4.909e+00;QD=25.98;ReadPosRankSum=2.12;SOR=0.318;VQSLOD=-3.473e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,40:50:99:1028,0,197
chr1	148306281	rs200627416	G	A	76.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=40.00;QD=31.18;SOR=2.303;VQSLOD=-4.689e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	148342066	rs61809875	G	T	632.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.691e+00;DB;DP=38;ExcessHet=6.9897;FS=7.286;MQ=47.90;MQRankSum=-3.493e+00;QD=5.50;ReadPosRankSum=-2.532e+00;SOR=2.466;VQSLOD=-4.994e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,12:38:99:223,0,804
chr1	148343477	rs61809885	C	T	487.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=39.42;MQRankSum=-1.217e+00;QD=8.71;ReadPosRankSum=2.04;SOR=0.245;VQSLOD=-4.958e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:120,0,373
chr1	148344410	rs3895201	A	C	235.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=38.73;MQRankSum=-2.719e+00;QD=2.25;ReadPosRankSum=0.941;SOR=0.040;VQSLOD=-4.842e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,6:30:99:1|0:148344400_T_C:106,0,876:148344400
chr1	148344491	rs367646415	T	A	1805.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.432e+00;DB;DP=91;ExcessHet=6.9897;FS=3.405;MQ=45.40;MQRankSum=0.386;QD=4.84;ReadPosRankSum=-3.580e-01;SOR=0.411;VQSLOD=-3.732e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,21:91:99:470,0,2344
chr1	148344521	rs1880501	C	T	2829.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.439e+00;DB;DP=161;ExcessHet=6.9897;FS=2.713;MQ=47.25;MQRankSum=0.553;QD=4.72;ReadPosRankSum=0.776;SOR=0.418;VQSLOD=-3.599e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,38:161:99:696,0,3511
chr1	148344722	rs199907828	G	C	276.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910e+00;DB;DP=201;ExcessHet=3.0103;FS=2.668;MQ=46.46;MQRankSum=-3.170e-01;QD=1.37;ReadPosRankSum=-3.088e+00;SOR=1.018;VQSLOD=-4.980e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:170,31:201:99:0|1:148344722_G_C:285,0,7693:148344722
chr1	148344934	rs61809892	T	C	167.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=45.08;MQRankSum=-2.224e+00;QD=4.10;ReadPosRankSum=1.29;SOR=0.088;VQSLOD=-3.709e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,2:12:21:21,0,354
chr1	148346957	.	C	T	143.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449e+00;DP=25;ExcessHet=6.9897;FS=2.814;MQ=48.62;MQRankSum=-2.985e+00;QD=1.92;ReadPosRankSum=-1.589e+00;SOR=1.314;VQSLOD=-3.573e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,4:25:34:0|1:148346957_C_T:34,0,1089:148346957
chr1	148756300	.	TA	T	796.01	PASS	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MQ=30.82;QD=29.32;SOR=5.784;VQSLOD=5.36;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:24:1|1:148756300_TA_T:360,24,0:148756300
chr1	148873322	rs3881802	T	C	442.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DB;DP=16;ExcessHet=6.9897;FS=3.125;MQ=36.79;MQRankSum=-2.796e+00;QD=6.24;ReadPosRankSum=-5.840e-01;SOR=0.143;VQSLOD=-5.051e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:222,0,239
chr1	148873483	.	C	T	171.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-01;DP=161;ExcessHet=3.0103;FS=6.493;MQ=48.89;MQRankSum=-3.313e+00;QD=1.06;ReadPosRankSum=3.38;SOR=1.151;VQSLOD=-3.964e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,25:161:99:180,0,3382
chr1	148873515	.	T	C	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129e+00;DP=153;ExcessHet=3.0103;FS=5.304;MQ=50.16;MQRankSum=-2.992e+00;NEGATIVE_TRAIN_SITE;QD=1.49;ReadPosRankSum=1.22;SOR=0.730;VQSLOD=-2.761e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:137,16:153:99:0|1:148873515_T_C:237,0,5884:148873515
chr1	148873516	.	C	A	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893e+00;DP=153;ExcessHet=3.0103;FS=5.304;MQ=50.16;MQRankSum=-2.992e+00;NEGATIVE_TRAIN_SITE;QD=1.49;ReadPosRankSum=1.33;SOR=0.730;VQSLOD=-2.782e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:137,16:153:99:0|1:148873515_T_C:237,0,5884:148873515
chr1	148873574	rs74545317	G	T	2118.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e+00;DB;DP=88;ExcessHet=6.9897;FS=0.507;MQ=53.47;MQRankSum=1.25;NEGATIVE_TRAIN_SITE;QD=7.76;ReadPosRankSum=1.05;SOR=0.632;VQSLOD=-3.257e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,25:88:99:547,0,1697
chr1	148873588	rs201184728	A	T	576.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=72;ExcessHet=3.9794;FS=1.944;MQ=53.99;MQRankSum=-5.342e+00;QD=3.69;ReadPosRankSum=1.31;SOR=0.967;VQSLOD=-4.876e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,18:72:99:402,0,1581
chr1	148889699	rs10157381	A	G	2516.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=92;ExcessHet=6.9897;FS=0.474;MQ=52.41;MQRankSum=0.108;NEGATIVE_TRAIN_SITE;QD=8.68;ReadPosRankSum=-7.820e-01;SOR=0.643;VQSLOD=-3.323e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,31:92:99:718,0,1518
chr1	148889778	rs61788508	T	C	1365.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=42.53;MQRankSum=0.096;QD=13.66;ReadPosRankSum=-1.920e-01;SOR=0.363;VQSLOD=-4.490e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:441,0,512
chr1	148902979	rs151092652	C	T	10315.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DB;DP=451;ExcessHet=6.9897;FS=3.388;MQ=39.42;MQRankSum=-5.944e+00;QD=7.24;ReadPosRankSum=-9.100e-02;SOR=0.478;VQSLOD=-4.961e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:304,147:451:99:2821,0,7512
chr1	149290301	rs58203606	T	C	1124.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=53.93;MQRankSum=-1.489e+00;NEGATIVE_TRAIN_SITE;QD=22.96;ReadPosRankSum=-6.310e-01;SOR=0.582;VQSLOD=-2.647e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:341,0,209
chr1	149290309	rs61789499	G	C	314.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=52.57;MQRankSum=-3.714e+00;NEGATIVE_TRAIN_SITE;QD=7.67;ReadPosRankSum=0.956;SOR=0.693;VQSLOD=-3.869e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:108,0,686
chr1	149290881	rs144019609	C	T	1245.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590e+00;DB;DP=193;ExcessHet=3.0103;FS=0.958;MQ=46.66;MQRankSum=3.32;QD=6.45;ReadPosRankSum=1.48;SOR=0.615;VQSLOD=-4.876e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,63:193:99:1254,0,3283
chr1	149398864	.	C	A	2698.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258e+00;DP=223;ExcessHet=3.0103;FS=1.656;MQ=42.61;MQRankSum=-6.286e+00;QD=12.10;ReadPosRankSum=-1.272e+00;SOR=0.561;VQSLOD=-4.878e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,120:223:99:2707,0,2446
chr1	149399931	rs138244527	G	A	1165.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=41.41;MQRankSum=-3.067e+00;QD=32.39;ReadPosRankSum=0.531;SOR=3.383;VQSLOD=-5.110e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:535,42,0
chr1	149665167	rs588242	A	G	16484.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=50.07;NEGATIVE_TRAIN_SITE;QD=33.51;SOR=1.209;VQSLOD=-1.178e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4025,378,0
chr1	149665214	rs12562653	T	G	4762.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;DB;DP=157;ExcessHet=6.9897;FS=2.645;MQ=50.87;MQRankSum=0.140;NEGATIVE_TRAIN_SITE;QD=7.77;ReadPosRankSum=1.27;SOR=0.503;VQSLOD=-3.061e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,63:157:99:1501,0,2406
chr1	149665383	rs79634604	A	G	4317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250e-01;DB;DP=122;ExcessHet=6.9897;FS=1.989;MQ=51.69;MQRankSum=0.172;NEGATIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.360;SOR=0.845;VQSLOD=-3.078e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,56:122:99:1408,0,1695
chr1	149676401	rs146138154	A	G	13710.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DB;DP=301;ExcessHet=6.9897;FS=7.271;MQ=49.37;MQRankSum=-1.067e+01;QD=13.91;ReadPosRankSum=-1.013e+00;SOR=1.187;VQSLOD=-5.171e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:146,155:301:99:4153,0,3727
chr1	149763115	.	C	T	52.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109e+00;DP=16;ExcessHet=3.0103;FS=0.000;MQ=43.93;MQRankSum=-2.020e+00;QD=3.27;ReadPosRankSum=0.547;SOR=0.260;VQSLOD=-4.141e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:61:61,0,418
chr1	149900985	.	C	CA	252.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;DP=28;ExcessHet=6.9897;FS=6.013;MQ=60.00;MQRankSum=0.00;QD=2.81;ReadPosRankSum=-6.640e-01;SOR=1.389;VQSLOD=4.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,7:28:80:80,0,395
chr1	149906413	rs11205303	T	C	825.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.530e-01;DB;DP=87;ExcessHet=3.0103;FS=0.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=-1.431e+00;SOR=0.551;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,36:87:99:834,0,1249
chr1	150115398	rs12138231	T	A	1004.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.860e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=-1.206e+00;SOR=1.329;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:331,24,0
chr1	150122493	rs4553237	T	C	12942.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.63;SOR=1.265;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5108,558,0
chr1	150123034	.	A	C	474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.62;ReadPosRankSum=-5.670e-01;SOR=0.399;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:483,0,303
chr1	150128006	rs11205334	G	A	275.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=4.407;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr1	150128425	rs1545762	C	T	1617.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.730;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.42;ReadPosRankSum=-8.900e-02;SOR=1.161;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:375,30,0
chr1	150129267	rs10749675	G	A	3132.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=2.520;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:862,72,0
chr1	150129335	rs3208509	G	A	1367.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.218e+00;DB;DP=12;ExcessHet=3.0103;FS=1.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.81;ReadPosRankSum=-1.540e-01;SOR=0.400;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:471,36,0
chr1	150130835	rs10888573	G	A	1181.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.74;SOR=5.353;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:598,45,0
chr1	150203082	rs201009025	C	CT	82.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.16;ReadPosRankSum=0.204;SOR=0.787;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:25:25,0,257
chr1	150236314	.	CT	C	217.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069e+00;DP=14;ExcessHet=6.9897;FS=2.074;MQ=59.87;MQRankSum=0.00;QD=4.64;ReadPosRankSum=0.345;SOR=1.371;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,4:14:38:38,0,142
chr1	150249004	rs139591160	G	A	962.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094e+00;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.179;SOR=0.677;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:971,0,634
chr1	150249101	rs11205354	C	A	2268.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.320e-01;DB;DP=22;ExcessHet=3.9794;FS=3.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=0.561;SOR=0.301;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:339,0,344
chr1	150252329	rs11205355	G	A	765.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DB;DP=18;ExcessHet=6.9897;FS=2.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=-6.560e-01;SOR=0.206;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:394,0,181
chr1	150252984	rs2274127	T	G	890.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DB;DP=14;ExcessHet=3.9794;FS=1.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.46;ReadPosRankSum=-1.158e+00;SOR=0.358;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,12:14:38:404,0,38
chr1	150255587	rs2147324	T	C	1364.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.25;ReadPosRankSum=1.26;SOR=0.849;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:216,0,212
chr1	150255718	rs138047846	C	T	1579.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913e+00;DB;DP=124;ExcessHet=3.0103;FS=9.600;MQ=60.00;MQRankSum=0.00;QD=12.74;ReadPosRankSum=-2.639e+00;SOR=1.737;VQSLOD=16.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:68,56:124:99:1588,0,2044
chr1	150258838	rs1122967	C	G	4829.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.80;DB;DP=64;ExcessHet=3.9794;FS=2.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=0.142;SOR=0.954;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,28:64:99:877,0,920
chr1	150259400	rs9126	A	C	3362.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=48;ExcessHet=6.9897;FS=3.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.22;ReadPosRankSum=0.146;SOR=1.124;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:905,0,525
chr1	150276429	rs471738	G	A	2847.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DB;DP=73;ExcessHet=6.9897;FS=3.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-1.475e+00;SOR=0.954;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:935,0,862
chr1	150276461	rs471657	G	A	2013.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=50;ExcessHet=6.9897;FS=10.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.13;SOR=1.498;VQSLOD=18.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:643,0,652
chr1	150277387	rs11205359	T	C	520.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=15;ExcessHet=6.9897;FS=4.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-3.430e-01;SOR=0.167;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:138,0,274
chr1	150280801	rs8006	G	C	187.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=-2.930e-01;SOR=1.911;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:193,0,114
chr1	150281202	rs580060	A	C	2670.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=0.307;SOR=0.742;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:560,0,450
chr1	150281501	rs1260396	A	C	351.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=1.24;SOR=0.551;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:95:95,0,199
chr1	150284493	rs371008753	TA	T	300.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:28:63,0,28
chr1	150297334	.	CT	C	239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DP=24;ExcessHet=6.9897;FS=4.069;MQ=60.00;MQRankSum=0.00;QD=3.38;ReadPosRankSum=0.123;SOR=1.445;VQSLOD=4.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:24:77:77,0,339
chr1	150300727	rs834225	T	C	1555.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375e+00;DB;DP=29;ExcessHet=6.9897;FS=4.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=1.18;SOR=0.353;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:369,0,457
chr1	150301006	.	ATTTT	A	218.36	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=14;ExcessHet=3.9794;FS=3.851;MQ=59.88;MQRankSum=0.00;QD=8.09;ReadPosRankSum=1.96;SOR=1.730;VQSLOD=4.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:152,0,247
chr1	150305863	rs1260406	C	A	251.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:70:139,0,70
chr1	150307270	rs1260408	T	G	677.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=6;ExcessHet=6.9897;FS=10.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-1.890e-01;SOR=0.054;VQSLOD=18.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:111,0,101
chr1	150310549	rs34911220	C	CA	434.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DB;DP=29;ExcessHet=6.9897;FS=0.869;MQ=60.00;MQRankSum=0.00;QD=4.78;ReadPosRankSum=0.089;SOR=0.586;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,9:29:99:124,0,352
chr1	150317239	rs5777721	CT	C	228.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.94;ReadPosRankSum=-7.730e-01;SOR=0.929;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:63:92,0,63
chr1	150321486	rs1625468	G	A	595.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095e+00;DB;DP=21;ExcessHet=3.9794;FS=3.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.72;SOR=0.246;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:342,0,216
chr1	150321568	rs16836186	C	G	416.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=35;ExcessHet=3.0103;FS=2.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=2.06;SOR=0.754;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:425,0,479
chr1	150325003	rs374616559	TG	T	91.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=-3.190e-01;SOR=0.916;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:25:100,0,25
chr1	150389964	.	GA	G	1379.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-01;DP=42;ExcessHet=6.9897;FS=2.193;MQ=60.00;MQRankSum=0.00;QD=10.87;ReadPosRankSum=-6.050e-01;SOR=0.455;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,18:42:99:389,0,557
chr1	150432802	rs12029359	G	A	794.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531e+00;DB;DP=27;ExcessHet=3.9794;FS=4.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=1.14;SOR=1.457;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:267,0,482
chr1	150432870	rs71776857	GGTT	G	259.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.28;ReadPosRankSum=-6.080e-01;SOR=0.582;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:75:120,0,75
chr1	150445819	rs7002	A	G	2592.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=83;ExcessHet=3.9794;FS=2.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=-5.310e-01;SOR=0.975;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,47:83:99:1232,0,787
chr1	150459692	rs3840449	GA	G	624.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=0.736;SOR=0.859;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:123,0,158
chr1	150460168	rs2275246	A	G	499.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DB;DP=7;ExcessHet=6.9897;FS=3.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.00;SOR=1.134;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,144
chr1	150470322	rs11590324	C	A	832.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.340e-01;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=1.50;SOR=0.818;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:382,0,489
chr1	150471157	rs12023021	T	A	2113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.769e+00;DB;DP=196;ExcessHet=3.0103;FS=5.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=2.10;SOR=0.971;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,88:196:99:2122,0,2837
chr1	150471848	rs34802685	A	AT	163.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.29;ReadPosRankSum=-6.500e-02;SOR=0.746;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:62:62,0,66
chr1	150477061	rs3738487	C	T	2778.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=75;ExcessHet=3.9794;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.970;SOR=0.964;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,38:75:99:1153,0,1072
chr1	150480373	rs3754217	G	T	249.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.600e-02;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=0.652;SOR=1.270;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr1	150481896	rs116804526	C	T	600.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=27;ExcessHet=3.0103;FS=1.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=1.88;SOR=0.223;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,20:27:99:609,0,172
chr1	150482738	rs11205387	G	A	2328.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=71;ExcessHet=3.9794;FS=2.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-3.550e-01;SOR=0.487;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,41:71:99:1036,0,706
chr1	150483236	rs9661040	A	C	979.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.228;SOR=0.406;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:294,0,412
chr1	150483355	rs3737240	C	T	2455.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=88;ExcessHet=3.9794;FS=5.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.163;SOR=1.098;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1376,0,1174
chr1	150483840	rs4970979	C	T	2792.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.837e+00;DB;DP=40;ExcessHet=6.9897;FS=0.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=0.485;SOR=0.590;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,25:40:99:784,0,469
chr1	150484395	rs149815479	ACC	A	3237.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DB;DP=82;ExcessHet=6.9897;FS=11.670;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.274;SOR=1.356;VQSLOD=3.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1391,0,1527
chr1	150484555	rs875514	C	G	573.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=12;ExcessHet=6.9897;FS=7.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.558;SOR=0.141;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:90:90,0,267
chr1	150484987	rs13294	G	A	4926.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=200;ExcessHet=3.9794;FS=1.197;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.782;SOR=0.617;VQSLOD=6.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,90:200:99:2289,0,2765
chr1	150485531	rs945715	T	C	881.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=3.0103;FS=18.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.66;ReadPosRankSum=-4.690e-01;SOR=4.800;VQSLOD=9.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:249,18,0
chr1	150485566	rs12031973	T	G	968.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.506;SOR=1.073;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:219,0,245
chr1	150485571	rs12031974	T	C	2011.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.19;SOR=2.880;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:657,54,0
chr1	150524367	rs199813152	CA	C	150.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;DB;DP=41;ExcessHet=3.9794;FS=0.995;MQ=59.89;MQRankSum=0.00;QD=2.09;ReadPosRankSum=0.418;SOR=0.820;VQSLOD=5.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,8:41:84:84,0,691
chr1	150526044	rs41317515	G	C	4011.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=193;ExcessHet=3.9794;FS=2.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=1.67;SOR=0.546;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,91:193:99:2343,0,2304
chr1	150527292	rs9659061	G	A	208.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.180;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:150527292_G_A:75,0,212:150527292
chr1	150527294	rs12124948	C	T	66.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:150527292_G_A:75,0,212:150527292
chr1	150528090	rs146160043	G	GACAC	3978.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.404;DB;DP=57;ExcessHet=1.5490;FS=3.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=-9.900e-01;SOR=0.484;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2532,171,0
chr1	150528118	rs149100901	T	TACAC	2797.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.869e+00;DB;DP=39;ExcessHet=1.5490;FS=2.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.76;ReadPosRankSum=-2.819e+00;SOR=0.411;VQSLOD=5.72;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1748,117,0
chr1	150528175	rs35233292	GCA	G	1072.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;DB;DP=13;ExcessHet=1.5490;FS=3.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=2.10;SOR=1.585;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:576,39,0
chr1	150528208	rs9728540	C	T	503.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.98;ReadPosRankSum=1.38;SOR=0.954;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:174,0,124
chr1	150529322	rs34379037	T	TAA	3796.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.540e-01;DB;DP=45;ExcessHet=3.9794;FS=3.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=0.243;SOR=1.019;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,45:45:99:2119,144,0
chr1	150530265	rs71815576	GGCT	G	1197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868e+00;DB;DP=63;ExcessHet=3.0103;FS=7.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=-1.451e+00;SOR=0.190;VQSLOD=5.25;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,32:63:99:0|1:150530265_GGCT_G:1206,0,1511:150530265
chr1	150530270	rs376060613	AGCC	A	1197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.960e+00;DB;DP=62;ExcessHet=3.0103;FS=5.564;MQ=60.00;MQRankSum=0.00;QD=19.31;ReadPosRankSum=-1.561e+00;SOR=0.241;VQSLOD=4.64;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,33:62:99:0|1:150530265_GGCT_G:1206,0,1511:150530265
chr1	150530274	.	C	A	1141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.698e+00;DP=57;ExcessHet=3.0103;FS=5.816;MQ=60.00;MQRankSum=0.00;QD=20.02;ReadPosRankSum=-1.301e+00;SOR=0.248;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,30:57:99:0|1:150530265_GGCT_G:1150,0,1394:150530265
chr1	150531008	rs10888382	T	C	15860.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=1.640;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5085,486,0
chr1	150531050	rs10749657	G	A	20206.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=211;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=1.168;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,211:211:99:6282,631,0
chr1	150531170	rs10749658	C	T	17810.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.46;DB;DP=214;ExcessHet=3.0103;FS=0.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=0.864;SOR=0.822;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,214:214:99:6586,640,0
chr1	150531380	rs11204664	T	C	2168.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.590e-01;DB;DP=44;ExcessHet=1.5490;FS=3.968;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.557;SOR=0.397;VQSLOD=6.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1437,132,0
chr1	150550019	rs11428742	T	TA	3824.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=2.517;VQSLOD=5.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1045,84,0
chr1	150595537	rs11204682	G	T	273.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.897e+00;DB;DP=17;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=1.06;SOR=0.098;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:282,0,194
chr1	150600181	rs2280078	C	T	444.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DB;DP=9;ExcessHet=6.9897;FS=1.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.643;SOR=0.381;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:22:22,0,183
chr1	150636333	.	G	A	259.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DP=20;ExcessHet=3.0103;FS=2.282;MQ=60.00;MQRankSum=0.00;QD=12.96;ReadPosRankSum=1.60;SOR=1.609;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:268,0,286
chr1	150666797	rs7412396	G	A	521.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=-1.200e-01;SOR=1.329;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:57:156,0,57
chr1	150671243	rs139837908	AC	A	1736.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=28;ExcessHet=6.9897;FS=0.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=-2.830e-01;SOR=0.818;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,11:28:99:344,0,599
chr1	150676485	rs12403609	T	C	78.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.11;ReadPosRankSum=0.980;SOR=2.093;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:87:87,0,232
chr1	150676674	rs367543855	TA	T	757.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;DB;DP=46;ExcessHet=6.9897;FS=5.312;MQ=59.84;MQRankSum=0.00;QD=6.37;ReadPosRankSum=0.414;SOR=0.629;VQSLOD=4.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,21:46:99:403,0,356
chr1	150678910	rs1336899	T	C	2214.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.463e+00;DB;DP=31;ExcessHet=6.9897;FS=6.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=0.00;SOR=2.639;VQSLOD=19.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:534,0,547
chr1	150679033	rs1336900	G	A	6940.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.330e-01;DB;DP=165;ExcessHet=6.9897;FS=1.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.875;SOR=0.802;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,88:165:99:2152,0,1784
chr1	150679358	rs11586422	C	T	3600.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=-4.380e-01;SOR=0.731;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:556,0,555
chr1	150680988	rs3768005	A	T	586.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=-5.240e-01;SOR=0.407;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,113
chr1	150689984	rs140527786	A	AT	790.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=14;ExcessHet=3.9794;FS=1.671;MQ=60.00;MQRankSum=0.00;QD=18.38;ReadPosRankSum=1.52;SOR=1.248;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:111,0,170
chr1	150705755	rs1415148	G	A	1169.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=24;ExcessHet=3.9794;FS=2.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=-7.350e-01;SOR=2.053;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,17:24:99:621,0,187
chr1	150722844	rs11587444	A	G	165.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.189;SOR=0.892;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,103
chr1	150727329	rs12068264	C	T	331.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=-9.360e-01;SOR=0.239;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:131,0,171
chr1	150727539	rs2230061	G	A	4706.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DB;DP=126;ExcessHet=6.9897;FS=1.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-2.660e-01;SOR=0.831;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,60:126:99:1517,0,1614
chr1	150730184	rs11204722	C	A	2355.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.66;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=1.33;SOR=0.846;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:351,0,402
chr1	150730279	rs2275235	A	G	4135.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=66;ExcessHet=6.9897;FS=3.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-8.470e-01;SOR=0.912;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,32:66:99:933,0,876
chr1	150730529	.	A	AT	275.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380e-01;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.24;ReadPosRankSum=1.57;SOR=0.446;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:22:99:225,0,175
chr1	150771703	rs10788796	T	C	8956.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=1.231;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3383,337,0
chr1	150779556	.	T	TCACA	293.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=3.0103;FS=5.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-7.120e-01;SOR=3.334;VQSLOD=4.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:105,9,0
chr1	150779755	rs6587522	C	T	7663.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=0.717;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2551,256,0
chr1	150784620	rs10305748	C	T	423.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=64;ExcessHet=3.0103;FS=3.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.61;ReadPosRankSum=-1.400e-01;SOR=1.410;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,19:64:99:432,0,1191
chr1	150789961	rs3894771	A	T	1334.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=1.42;SOR=0.418;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:248,0,122
chr1	150790289	rs35672926	C	CA	482.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.69;ReadPosRankSum=0.224;SOR=0.904;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:15:65:112,0,65
chr1	150801466	rs3738483	T	C	1468.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=-1.084e+00;SOR=0.732;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:460,39,0
chr1	150804401	rs200891935	G	GA	318.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DB;DP=20;ExcessHet=6.9897;FS=0.973;MQ=59.97;MQRankSum=0.00;QD=4.55;ReadPosRankSum=-8.830e-01;SOR=0.840;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:20:77:77,0,257
chr1	150804429	rs10305704	A	C	956.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=17;ExcessHet=6.9897;FS=2.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.247;SOR=1.127;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:222,0,294
chr1	150808889	rs2228099	C	G	3574.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DB;DP=44;ExcessHet=3.9794;FS=3.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=0.575;SOR=0.446;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:669,0,526
chr1	150811794	rs2256355	T	C	2082.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=0.107;SOR=0.773;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:350,0,314
chr1	150815054	rs149242771	GA	G	306.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=15;ExcessHet=3.9794;FS=4.393;MQ=59.95;MQRankSum=0.00;QD=9.00;ReadPosRankSum=0.400;SOR=2.066;VQSLOD=4.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:135,0,215
chr1	150825511	rs10305673	C	T	507.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=11;ExcessHet=6.9897;FS=3.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=-9.080e-01;SOR=1.845;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:269,0,145
chr1	150849071	rs66776757	ACC	A,AC	1537.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.630;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=1.20;SOR=0.966;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,9,6:15:99:472,152,126,254,0,213
chr1	150914922	rs11430191	C	CA	531.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=22;ExcessHet=3.9794;FS=6.326;MQ=59.21;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-3.560e-01;SOR=1.981;VQSLOD=5.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:22:96:96,0,189
chr1	150916657	rs2271076	C	T	903.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=0.376;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:123,0,239
chr1	150922939	rs143224912	C	T	429.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DB;DP=26;ExcessHet=3.0103;FS=6.486;MQ=60.00;MQRankSum=0.00;QD=16.51;ReadPosRankSum=1.03;SOR=0.052;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,14:26:99:0|1:150922929_T_C:438,0,416:150922929
chr1	150923099	rs17661357	T	C	1673.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=121;ExcessHet=3.0103;FS=0.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.703e+00;SOR=0.598;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,61:121:99:1682,0,1487
chr1	150923774	rs2124952	T	A	2415.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DB;DP=51;ExcessHet=6.9897;FS=5.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-4.400e-02;SOR=0.888;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:632,0,750
chr1	150933883	rs34200807	CT	C	395.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=0.524;SOR=1.609;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:89:89,0,89
chr1	150935872	rs2280627	A	G	4170.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DB;DP=55;ExcessHet=3.9794;FS=1.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.92;ReadPosRankSum=0.368;SOR=0.874;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,35:55:99:925,0,414
chr1	150938571	rs8444	G	A	2136.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=46;ExcessHet=6.9897;FS=10.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-4.660e-01;SOR=1.495;VQSLOD=19.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,26:46:99:699,0,496
chr1	150938616	rs267739	G	A	6927.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.35;SOR=1.347;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2238,214,0
chr1	150939744	rs11204750	C	A	3834.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.140e-01;DB;DP=71;ExcessHet=6.9897;FS=11.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-7.910e-01;SOR=1.233;VQSLOD=17.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,31:71:99:784,0,1082
chr1	150940053	.	C	T	309.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.690e-01;DP=41;ExcessHet=3.0103;FS=2.895;MQ=60.00;MQRankSum=0.00;QD=7.54;ReadPosRankSum=-2.100e-01;SOR=1.206;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,13:41:99:318,0,857
chr1	150940357	rs6656535	G	T	1323.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102e+00;DB;DP=17;ExcessHet=6.9897;FS=2.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=-9.210e-01;SOR=1.203;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,14:17:99:0|1:150940357_G_T:557,0,204:150940357
chr1	150940358	rs59988025	C	T	1323.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735e+00;DB;DP=17;ExcessHet=6.9897;FS=1.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=-8.060e-01;SOR=0.998;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,14:17:99:0|1:150940357_G_T:557,0,204:150940357
chr1	150941381	rs752376	C	T	1774.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=1.89;SOR=0.761;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:293,0,274
chr1	150944541	rs267737	A	G	1921.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.43;SOR=6.273;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:767,57,0
chr1	150956128	rs12405726	G	A	1134.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678e+00;DB;DP=16;ExcessHet=3.9794;FS=9.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.409;SOR=2.242;VQSLOD=17.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:437,0,122
chr1	150958977	rs2305814	T	C	4902.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.157e+00;DB;DP=105;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=-1.026e+00;SOR=0.672;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,53:105:99:1384,0,1476
chr1	150960350	rs7532008	A	C	4754.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=73;ExcessHet=1.5490;FS=3.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=-1.246e+00;SOR=1.133;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,46:73:99:1222,0,510
chr1	150969992	rs2925740	T	C	18003.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=193;ExcessHet=3.0103;FS=1.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=-7.270e-01;SOR=0.608;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,193:193:99:6647,578,0
chr1	150970577	rs2925741	G	T	7415.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=66;ExcessHet=3.0103;FS=8.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.49;ReadPosRankSum=-3.940e-01;SOR=1.201;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,65:66:99:2173,187,0
chr1	150970836	rs1673160	T	A	465.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;DB;DP=31;ExcessHet=3.0103;FS=1.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-9.930e-01;SOR=1.362;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:474,0,321
chr1	150972538	rs708909	G	A	4018.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=1.549;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1535,135,0
chr1	150973514	rs771203	G	A	712.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.80;ReadPosRankSum=-7.770e-01;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:301,27,0
chr1	150974162	rs771204	G	A	4392.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523e+00;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=0.133;SOR=0.728;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,30:60:99:694,0,790
chr1	150975108	rs771205	T	C	9844.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=33.83;SOR=0.928;VQSLOD=5.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3076,276,0
chr1	150981620	rs771197	C	T	1327.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.40;SOR=4.743;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:517,39,0
chr1	150990466	rs71090118	C	CAT	2282.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=25;ExcessHet=3.9794;FS=0.803;MQ=60.00;MQRankSum=0.00;QD=22.38;ReadPosRankSum=-1.004e+00;SOR=0.608;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:78:1155,78,0
chr1	150990825	rs3738480	A	G	1374.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.28;DB;DP=18;ExcessHet=3.9794;FS=5.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=-6.350e-01;SOR=0.100;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:717,54,0
chr1	150991285	rs6664220	A	G	1908.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.657e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.30;ReadPosRankSum=-1.209e+00;SOR=1.270;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:886,69,0
chr1	150991330	rs6664295	A	C	908.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.92;ReadPosRankSum=0.464;SOR=0.495;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:567,39,0
chr1	150997940	rs3738478	T	C	1324.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.44;ReadPosRankSum=1.45;SOR=0.544;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:506,42,0
chr1	150998221	rs55774303	AT	A	1516.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.329;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;QD=21.36;ReadPosRankSum=0.575;SOR=0.818;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,23:24:46:582,46,0
chr1	150999863	rs55717234	A	G	3581.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=1.022;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3598,351,0
chr1	151000060	rs112331762	A	AT	97.23	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.15;ReadPosRankSum=-1.150e+00;SOR=1.402;VQSLOD=5.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:1:41,1,0
chr1	151001583	rs6691701	G	A	2443.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.896e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.03;ReadPosRankSum=-4.700e-01;SOR=2.670;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:823,68,0
chr1	151006539	rs3738476	C	A	14035.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=0.772;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4523,431,0
chr1	151015299	rs5777753	G	GA	964.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=-3.480e-01;SOR=0.481;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:53:157,0,53
chr1	151018861	rs6587552	A	G	1931.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=1.755;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:151018837_G_T:669,51,0:151018837
chr1	151019180	rs6587553	A	G	5123.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=1.548;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1633,153,0
chr1	151026815	rs2902810	C	T	8426.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.64;SOR=0.961;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2314,233,0
chr1	151028234	rs11204767	G	T	10596.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=1.993;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3800,348,0
chr1	151039576	rs74263405	GAA	G	173.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=10;ExcessHet=6.9897;FS=7.579;MQ=60.00;MQRankSum=0.00;QD=6.20;ReadPosRankSum=0.195;SOR=0.045;VQSLOD=3.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,3:10:83:83,0,149
chr1	151039609	rs3738481	A	G	2302.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=3.258;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:598,57,0
chr1	151070252	rs35034487	CA	C	2398.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DB;DP=44;ExcessHet=3.0103;FS=0.994;MQ=60.00;MQRankSum=0.00;QD=19.50;ReadPosRankSum=1.02;SOR=0.551;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,19:44:99:395,0,427
chr1	151079317	rs6676190	C	T	188.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.07;SOR=3.611;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr1	151104598	rs4971005	A	G	910.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.93;SOR=2.833;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:219,15,0
chr1	151104950	rs10788800	G	A	6563.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.553e+00;DB;DP=90;ExcessHet=3.0103;FS=0.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=1.17;SOR=0.797;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,89:90:99:3025,228,0
chr1	151105824	rs4971006	C	G	4596.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.31;SOR=1.307;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1512,135,0
chr1	151108137	rs4971007	T	G	21950.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=0.957;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,193:193:99:5985,578,0
chr1	151109641	rs4971008	G	A	1004.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.54;SOR=6.593;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:401,30,0
chr1	151112230	.	C	T	905.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298e+00;DP=65;ExcessHet=3.0103;FS=3.898;MQ=60.00;MQRankSum=0.00;QD=13.93;ReadPosRankSum=0.328;SOR=1.355;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,32:65:99:914,0,996
chr1	151114882	rs11464219	C	CT	10256.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.140e-01;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.14;ReadPosRankSum=-1.691e+00;SOR=0.721;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,81:82:99:2987,209,0
chr1	151115017	rs74949844	G	A	1889.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=131;ExcessHet=3.0103;FS=0.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=2.51;SOR=0.607;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,66:131:99:1898,0,1747
chr1	151115186	rs12569193	C	T	1951.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.320e-01;DB;DP=20;ExcessHet=3.0103;FS=4.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=-2.494e+00;SOR=3.076;VQSLOD=18.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:806,60,0
chr1	151133972	rs11317772	CA	C	66.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.60;ReadPosRankSum=0.00;SOR=0.412;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:74:74,0,104
chr1	151140888	rs373666513	CT	C	234.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DB;DP=32;ExcessHet=3.9794;FS=1.100;MQ=59.92;MQRankSum=0.00;QD=3.49;ReadPosRankSum=-8.960e-01;SOR=0.919;VQSLOD=5.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,7:32:85:85,0,558
chr1	151141266	.	CTTTT	C	196.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.11;MQRankSum=0.887;QD=11.55;ReadPosRankSum=0.992;SOR=1.371;VQSLOD=0.015;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:99:159,0,110
chr1	151141716	rs5777765	CT	C	84.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.78;MQRankSum=0.00;QD=9.34;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:9:39,0,9
chr1	151144086	rs74423006	T	C	2299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440e-01;DB;DP=139;ExcessHet=3.0103;FS=4.106;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=-1.600e-01;SOR=1.039;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,85:139:99:2308,0,1388
chr1	151146186	rs7552226	C	G	5882.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.60;SOR=2.247;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1758,156,0
chr1	151146276	rs7521416	T	C	2044.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.88;SOR=4.066;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:603,54,0
chr1	151149601	rs6656261	A	G	2418.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.31;SOR=3.477;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:893,78,0
chr1	151157765	rs4971011	T	C	398.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=-1.150e+00;SOR=3.442;VQSLOD=17.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:25:109,0,25
chr1	151171811	rs6683396	C	G	2244.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=-1.891e+00;SOR=2.368;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:206,0,261
chr1	151205303	rs7544947	A	G	3369.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=28;ExcessHet=3.0103;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.08;ReadPosRankSum=0.188;SOR=1.651;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:594,0,320
chr1	151205349	rs7545024	A	G	1713.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.98;ReadPosRankSum=-1.380e-01;SOR=1.609;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:240,0,212
chr1	151206557	rs79585366	T	G	318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.00;SOR=0.412;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:327,0,462
chr1	151209063	rs12407426	C	T	9924.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e-01;DB;DP=107;ExcessHet=3.0103;FS=0.621;MQ=59.72;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.82;ReadPosRankSum=1.94;SOR=0.624;VQSLOD=5.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,61:107:99:1491,0,1105
chr1	151209297	.	C	CTT	732.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DP=31;ExcessHet=3.0103;FS=1.114;MQ=59.64;MQRankSum=-4.070e-01;QD=9.77;ReadPosRankSum=-1.240e+00;SOR=0.576;VQSLOD=0.344;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,6:31:77:77,0,401
chr1	151210789	rs7532935	C	T	5844.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DB;DP=87;ExcessHet=3.0103;FS=0.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=-1.870e-01;SOR=0.630;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1166,0,977
chr1	151212399	rs141190258	C	CCTT	5942.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DB;DP=41;ExcessHet=3.0103;FS=1.038;MQ=60.00;MQRankSum=0.00;QD=30.87;ReadPosRankSum=0.509;SOR=0.535;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,14:41:99:513,0,1293
chr1	151237589	rs3216063	TC	T	6651.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DB;DP=76;ExcessHet=3.0103;FS=0.601;MQ=60.00;MQRankSum=0.00;QD=25.01;ReadPosRankSum=1.60;SOR=0.748;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,32:76:99:769,0,1121
chr1	151238222	rs2275900	G	A	2886.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.879e+00;DB;DP=29;ExcessHet=3.0103;FS=9.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.16;ReadPosRankSum=-4.430e-01;SOR=0.074;VQSLOD=19.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:301,0,628
chr1	151239051	rs7489	T	C	8433.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060e+00;DB;DP=97;ExcessHet=3.0103;FS=2.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=1.05;SOR=0.520;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,56:97:99:1445,0,1043
chr1	151239570	rs10888408	C	T	13588.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055e+00;DB;DP=111;ExcessHet=3.0103;FS=0.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=0.244;SOR=0.508;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,62:111:99:1691,0,1299
chr1	151240008	rs41302131	A	G	1343.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=1.37;SOR=0.452;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:270,0,172
chr1	151253892	rs149827722	G	GT	791.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=2.10;SOR=1.981;VQSLOD=6.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:199,0,270
chr1	151254041	rs3811406	T	C	7465.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333e+00;DB;DP=120;ExcessHet=3.0103;FS=1.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.40;ReadPosRankSum=0.921;SOR=0.877;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,51:120:99:1261,0,1863
chr1	151263782	rs10788803	A	G	2746.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.164e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=-1.497e+00;SOR=0.802;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,13:32:99:321,0,580
chr1	151271782	rs10888409	A	C	1280.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.84;ReadPosRankSum=-8.600e-02;SOR=0.399;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:83:286,0,83
chr1	151278505	rs2031797	A	G	4655.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;DB;DP=58;ExcessHet=3.0103;FS=0.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.91;ReadPosRankSum=-2.570e-01;SOR=0.878;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:693,0,770
chr1	151280400	rs1536617	C	G	3376.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.280e-01;DB;DP=30;ExcessHet=3.0103;FS=2.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.16;ReadPosRankSum=-1.060e-01;SOR=1.223;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:578,0,353
chr1	151283019	rs943637	T	C	794.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.56;ReadPosRankSum=0.589;SOR=1.528;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:154,0,106
chr1	151288172	rs1056847	G	A	7861.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DB;DP=101;ExcessHet=3.0103;FS=1.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=-1.698e+00;SOR=0.605;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,41:101:99:1055,0,1600
chr1	151288391	rs1752379	A	G	13136.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=0.733;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4067,390,0
chr1	151314379	rs1752387	T	C	672.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=0.00;SOR=1.528;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:79:79,0,138
chr1	151316161	rs1752386	G	A	5202.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=1.096;VQSLOD=19.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1437,135,0
chr1	151337788	rs10788804	A	G	5112.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=69;ExcessHet=3.0103;FS=4.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=-1.508e+00;SOR=0.376;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,30:69:99:802,0,1041
chr1	151338570	rs2800953	G	A	174.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.86;ReadPosRankSum=0.319;SOR=0.799;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:69,0,37
chr1	151341703	rs55906289	G	A	754.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200e-01;DB;DP=28;ExcessHet=3.9794;FS=4.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.416;SOR=0.265;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:462,0,423
chr1	151341728	rs35093538	G	GC	741.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=11;ExcessHet=6.9897;FS=1.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.175;SOR=1.012;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:169,0,137
chr1	151372138	rs7172	G	A	4087.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.363e+00;DB;DP=55;ExcessHet=3.0103;FS=0.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=-1.850e-01;SOR=0.559;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1713,164,0
chr1	151372770	rs2495390	A	G	7068.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=33.78;SOR=1.124;VQSLOD=5.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2021,162,0
chr1	151373200	rs2495391	T	C	10641.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=0.871;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3001,282,0
chr1	151374545	rs1887544	C	T	247.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=-3.280e-01;SOR=1.802;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	151377248	rs6667714	T	C	2863.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=25.32;SOR=1.578;VQSLOD=2.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:669,54,0
chr1	151379250	rs2274535	G	A	2311.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.088e+00;DB;DP=22;ExcessHet=3.0103;FS=1.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.64;ReadPosRankSum=-1.189e+00;SOR=0.404;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:761,66,0
chr1	151380503	rs369570327	AAAAAG	A	144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DB;DP=15;ExcessHet=6.9897;FS=1.590;MQ=60.00;MQRankSum=0.00;QD=3.37;ReadPosRankSum=0.469;SOR=1.185;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:59:59,0,176
chr1	151380504	rs200057999	AAAAG	*,A	312.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.529;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.01;ReadPosRankSum=0.868;SOR=1.230;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,7:12:59:258,131,176,93,0,59
chr1	151381320	rs3831142	GA	G	2066.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=22;ExcessHet=3.0103;FS=1.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.16;ReadPosRankSum=0.00;SOR=0.387;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,22:22:66:688,66,0
chr1	151384711	rs1887545	A	G	1868.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.500e-01;DB;DP=27;ExcessHet=3.0103;FS=1.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=-4.910e-01;SOR=1.140;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:878,81,0
chr1	151384733	rs3748550	G	A	2365.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.528e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=-8.300e-01;SOR=0.812;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1015,105,0
chr1	151395782	rs2274533	T	C	2078.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.951;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.13;ReadPosRankSum=-1.300e+00;SOR=1.759;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1007,84,0
chr1	151396037	rs2274534	A	C	4498.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.280e+00;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.19;ReadPosRankSum=0.999;SOR=0.659;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1925,186,0
chr1	151400942	rs11204811	A	C	3087.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=30;ExcessHet=3.0103;FS=1.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=0.298;SOR=1.210;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:90:1|1:151400932_C_A:1087,90,0:151400932
chr1	151402045	rs6587577	A	G	5446.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150e+00;DB;DP=65;ExcessHet=3.0103;FS=2.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=-1.084e+00;SOR=1.085;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1996,195,0
chr1	151414924	rs9659456	A	G	339.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.93;SOR=1.609;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:174,15,0
chr1	151499635	rs2298168	C	T	2721.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=1.996;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:728,69,0
chr1	151501698	rs2096232	A	G	6009.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=1.671;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1876,177,0
chr1	151501737	rs6678068	T	C	8334.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=1.264;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2602,236,0
chr1	151503345	rs12134822	G	A	494.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=5.136;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:341,24,0
chr1	151504690	rs7549296	G	A	905.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.35;ReadPosRankSum=0.272;SOR=1.609;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:167,15,0
chr1	151508061	rs11204842	A	C	1650.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.209;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.51;ReadPosRankSum=1.56;SOR=0.934;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:747,66,0
chr1	151509966	rs5777776	T	TA	517.24	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=1.28;SOR=4.091;VQSLOD=3.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:158,18,0
chr1	151518484	rs71580387	T	TTC	2781.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=19;ExcessHet=3.0103;FS=2.615;MQ=60.00;MQRankSum=0.00;QD=29.26;ReadPosRankSum=0.892;SOR=1.832;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:59:828,59,0
chr1	151533936	rs113125642	TGCGCGCGC	T	199.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.26;SOR=1.981;VQSLOD=4.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	151535020	rs143684177	A	ATC	685.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-3.660e-01;SOR=0.693;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:13:181,0,13
chr1	151538507	rs11405272	T	TC	704.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=3.352;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:273,27,0
chr1	151542099	rs3748610	G	T	11238.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.107e+00;DB;DP=124;ExcessHet=3.0103;FS=1.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=0.670;SOR=0.504;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4092,372,0
chr1	151546444	rs3748609	G	A	144.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.96;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	151546931	rs6660238	A	G	2833.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.010e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.57;ReadPosRankSum=2.80;SOR=0.838;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1292,96,0
chr1	151551078	rs1544218	A	G	364.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.42;SOR=4.804;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	151551320	rs3748608	G	A	6254.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.927e+00;DB;DP=83;ExcessHet=3.0103;FS=2.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=0.187;SOR=0.933;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2548,249,0
chr1	151552301	rs3833527	TG	T	732.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.86;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:445,33,0
chr1	151553918	rs10494267	C	T	1121.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.370e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=0.081;SOR=1.981;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr1	151554503	rs1891592	T	C	9255.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.65;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.38;ReadPosRankSum=-6.700e-01;SOR=0.707;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3576,329,0
chr1	151634512	rs3831367	A	AT	2291.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.315;DB;DP=22;ExcessHet=3.0103;FS=5.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-1.363e+00;SOR=1.852;VQSLOD=6.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,22:22:69:700,69,0
chr1	151634803	rs11808761	G	A	3289.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=27;ExcessHet=3.0103;FS=1.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=-4.800e-02;SOR=1.368;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1004,81,0
chr1	151664882	rs61159507	C	CT	443.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739e+00;DB;DP=18;ExcessHet=3.9794;FS=12.361;MQ=59.84;MQRankSum=0.00;QD=7.15;ReadPosRankSum=0.876;SOR=0.083;VQSLOD=0.697;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,12:18:36:129,0,36
chr1	151675414	rs4845326	A	G	649.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.74;SOR=3.258;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:306,21,0
chr1	151675618	rs1308150	T	C	5086.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=1.406;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1863,174,0
chr1	151686983	rs939592	T	A	3553.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=119;ExcessHet=3.9794;FS=0.477;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.282;SOR=0.655;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,58:119:99:1426,0,1516
chr1	151694241	rs1879533	C	T	1326.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=48;ExcessHet=3.9794;FS=0.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.053;SOR=0.845;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,19:48:99:489,0,803
chr1	151700189	rs72506285	C	CCTG	2330.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DB;DP=29;ExcessHet=3.9794;FS=1.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=1.49;SOR=0.546;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,10:29:99:363,0,980
chr1	151700969	rs148204192	GGTGGGGGGTGGGGC	G	252.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=3.912;VQSLOD=5.40;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	151732700	rs10888433	A	G	1891.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.520e-01;DB;DP=42;ExcessHet=3.9794;FS=2.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=1.38;SOR=0.482;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,30:42:99:756,0,318
chr1	151733335	rs8480	T	G	1086.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=43;ExcessHet=3.9794;FS=5.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.639;SOR=0.707;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:610,0,477
chr1	151733379	.	CA	C,CAA	377.96	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.700e-02;DP=18;ExcessHet=3.0103;FS=5.131;MQ=60.00;MQRankSum=0.00;QD=7.71;ReadPosRankSum=-4.150e-01;SOR=0.211;VQSLOD=4.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,7,8:18:86:179,89,183,86,0,164
chr1	151735576	rs7007	T	C	5416.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DB;DP=230;ExcessHet=3.9794;FS=4.036;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.643;SOR=0.938;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,115:230:99:2774,0,3036
chr1	151740479	rs1196457	C	A	4834.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=1.279;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1584,153,0
chr1	151740666	rs2495397	T	C	12729.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=0.864;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4076,396,0
chr1	151742494	rs4995159	A	G	1386.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173e+00;DB;DP=19;ExcessHet=3.9794;FS=5.082;MQ=59.76;MQRankSum=0.00;QD=22.37;ReadPosRankSum=0.464;SOR=0.135;VQSLOD=4.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:99:390,0,144
chr1	151742550	.	GGAGAGA	G	3813.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100e-02;DP=48;ExcessHet=3.9794;FS=5.637;MQ=59.89;MQRankSum=0.00;QD=28.25;ReadPosRankSum=1.31;SOR=0.321;VQSLOD=4.79;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,26:48:99:0|1:151742550_GGAGAGA_G:1064,0,1039:151742550
chr1	151742565	rs140076465	GGGAGACCATGGGGAGACGGAGAC	G	3878.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=66;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=22.55;ReadPosRankSum=0.743;SOR=0.740;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,28:66:99:0|1:151742550_GGAGAGA_G:1051,0,1645:151742550
chr1	151743364	rs1781420	C	A	816.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.26;ReadPosRankSum=-4.310e-01;SOR=2.387;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:65:185,0,65
chr1	151743870	rs3833528	TA	T	298.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=-6.520e-01;SOR=1.609;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:91:91,0,128
chr1	151747043	rs1123855	C	T	2432.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=48;ExcessHet=3.9794;FS=4.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.814;SOR=0.749;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,19:48:99:453,0,715
chr1	151747733	rs1781421	C	T	3521.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.180e-01;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=1.07;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=-9.430e-01;SOR=0.660;VQSLOD=2.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,30:63:99:756,0,892
chr1	151747799	rs1781419	G	A	5438.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.657e+00;DB;DP=51;ExcessHet=3.0103;FS=3.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=-8.900e-01;SOR=0.393;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1753,153,0
chr1	151748425	rs3923394	C	A	1926.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=22;ExcessHet=3.0103;FS=4.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.80;ReadPosRankSum=0.464;SOR=1.351;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:767,66,0
chr1	151750963	rs1996730	C	T	1165.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=6.804;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	151751081	rs1996729	G	A	2276.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.390e-01;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=0.599;SOR=0.656;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:409,0,542
chr1	151752733	rs140770319	ATACTATCTATACAACCAGTCCTCAATTACTTTATATACAACCTCAGT	A	1432.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.85;ReadPosRankSum=0.103;SOR=0.846;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:99:208,0,743
chr1	151754112	rs35077383	T	C	5017.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.050;DB;DP=46;ExcessHet=3.0103;FS=1.493;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=-3.660e-01;SOR=0.526;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1649,138,0
chr1	151755282	.	C	T	717.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e+00;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.64;ReadPosRankSum=0.697;SOR=0.895;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:726,0,611
chr1	151780177	rs3828057	C	T	3798.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.980e-01;DB;DP=40;ExcessHet=3.0103;FS=5.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=-4.800e-02;SOR=1.297;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1290,120,0
chr1	151783597	rs939594	C	T	831.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.16;SOR=6.091;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr1	151783688	rs939595	A	C	2148.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.41;SOR=4.654;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:711,54,0
chr1	151789588	rs151171878	C	CTGTGTG,CTGTGTGTG	2223.58	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.78;QD=34.00;SOR=3.702;VQSLOD=4.92;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,9,2:14:44:626,94,44,306,0,261
chr1	151789609	rs56273334	C	T	2413.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.82;QD=31.06;SOR=3.258;VQSLOD=4.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:48:699,48,0
chr1	151789611	rs55841824	C	T	2128.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=15;ExcessHet=3.0103;FS=11.784;MQ=59.82;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=1.45;SOR=3.398;VQSLOD=-1.658e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:48:698,48,0
chr1	151789647	rs12144914	T	G	2702.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=40;ExcessHet=3.9794;FS=0.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=0.235;SOR=0.853;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,15:40:99:400,0,736
chr1	151801680	rs4845604	G	A	258.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.431;SOR=0.582;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,121
chr1	151803764	rs12126984	G	C	1789.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=3.080;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:519,42,0
chr1	151810304	rs12122596	G	C	937.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.598;SOR=0.730;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:473,0,513
chr1	151811226	rs6673556	G	A	5392.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.34;SOR=3.356;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1787,140,0
chr1	151819691	.	AGGAGGCAGGAGGCAGGCAGGGGAGGCAGGAGGCAGGAGGCAGGCAGG	A	4556.69	PASS	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.61;QD=23.50;SOR=0.775;VQSLOD=3.97;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,32:32:99:1462,124,0
chr1	151820298	rs6587624	G	C	11548.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.96;SOR=0.812;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3751,371,0
chr1	151820324	rs6587625	T	C	11661.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=0.759;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3814,377,0
chr1	151861477	rs1352654	A	G	598.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=5.421;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	151862661	rs1060870	G	A	3528.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.650;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.94;ReadPosRankSum=0.635;SOR=0.641;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1378,126,0
chr1	151867560	rs3762427	G	A	5420.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.33;POSITIVE_TRAIN_SITE;QD=34.53;SOR=1.026;VQSLOD=4.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1518,135,0
chr1	151881885	rs3748805	A	C	8960.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=2.562;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3135,279,0
chr1	152009530	rs3811422	T	C	3005.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=2.115;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:912,63,0
chr1	152060796	rs2935207	A	T	942.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.30;SOR=4.091;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:180,15,0
chr1	152084693	.	TCTC	T	1783.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-02;DP=30;ExcessHet=3.9794;FS=1.663;MQ=59.45;MQRankSum=0.708;QD=17.49;ReadPosRankSum=-4.330e-01;SOR=0.509;VQSLOD=0.475;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,5:30:99:1592,0,1004
chr1	152085505	rs2515663	A	C	6995.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=31.37;SOR=1.179;VQSLOD=5.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2051,192,0
chr1	152130451	.	G	A	694.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DP=63;ExcessHet=3.0103;FS=2.690;MQ=60.00;MQRankSum=0.00;QD=11.02;ReadPosRankSum=0.401;SOR=1.148;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,25:63:99:703,0,1066
chr1	152185500	rs12726613	C	G	1205.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.49;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=0.988;SOR=0.793;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:572,0,624
chr1	152185750	rs12729662	G	A	11197.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DB;DP=285;ExcessHet=1.5490;FS=1.554;MQ=59.77;MQRankSum=4.87;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=5.13;SOR=0.887;VQSLOD=-2.021e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:66,219:285:99:5673,0,2027
chr1	152185762	rs41266112	C	G	8082.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.53;DB;DP=284;ExcessHet=1.5490;FS=0.000;MQ=59.21;MQRankSum=-5.333e+00;QD=18.84;ReadPosRankSum=-1.648e+00;SOR=0.693;VQSLOD=-2.245e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:227,57:284:99:0|1:152185762_C_G:1682,0,9481:152185762
chr1	152185768	rs41266114	T	G	7719.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=284;ExcessHet=1.5490;FS=0.000;MQ=59.19;MQRankSum=-5.515e+00;QD=18.56;ReadPosRankSum=-2.863e+00;SOR=0.714;VQSLOD=-2.669e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:230,54:284:99:0|1:152185762_C_G:1605,0,9576:152185762
chr1	152185774	rs61814932	A	G	6713.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.12;DB;DP=283;ExcessHet=1.5490;FS=0.365;MQ=59.14;MQRankSum=-5.396e+00;QD=16.78;ReadPosRankSum=-3.455e+00;SOR=0.718;VQSLOD=-2.837e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:235,48:283:99:0|1:152185762_C_G:1326,0,10056:152185762
chr1	152185780	rs41266116	G	A	6281.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.47;DB;DP=281;ExcessHet=1.5490;FS=0.000;MQ=59.11;MQRankSum=-5.676e+00;QD=16.27;ReadPosRankSum=-4.336e+00;SOR=0.698;VQSLOD=-3.559e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:237,44:281:99:0|1:152185762_C_G:1209,0,9939:152185762
chr1	152185790	rs76102381	T	C	4532.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=261;ExcessHet=1.5490;FS=0.903;MQ=58.72;MQRankSum=-4.345e+00;NEGATIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-5.165e+00;SOR=0.700;VQSLOD=-3.549e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:230,31:261:99:0|1:152185762_C_G:810,0,9675:152185762
chr1	152185792	rs74493243	G	A	3776.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=261;ExcessHet=1.5490;FS=0.000;MQ=58.60;MQRankSum=-4.096e+00;NEGATIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-4.818e+00;SOR=0.706;VQSLOD=-3.371e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:233,28:261:99:0|1:152185762_C_G:594,0,9774:152185762
chr1	152185796	rs41266118	A	G	3200.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=254;ExcessHet=1.5490;FS=0.000;MQ=58.47;MQRankSum=-4.049e+00;NEGATIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-5.252e+00;SOR=0.708;VQSLOD=-3.821e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:229,25:254:99:0|1:152185762_C_G:423,0,9828:152185762
chr1	152188176	rs147618491	G	A	6857.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.83;DB;DP=512;ExcessHet=3.9794;FS=0.000;MQ=42.49;MQRankSum=-4.206e+00;QD=4.56;ReadPosRankSum=0.514;SOR=0.729;VQSLOD=-4.830e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:346,166:512:99:3060,0,8271
chr1	152188413	rs200760332	C	T	8758.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=1159;ExcessHet=3.9794;FS=2.265;MQ=48.78;MQRankSum=-2.677e+00;QD=3.38;ReadPosRankSum=1.12;SOR=0.523;VQSLOD=-3.805e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:867,292:1159:99:5609,0,22699
chr1	152190835	rs144383071	G	A	8237.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780e+00;DB;DP=360;ExcessHet=3.9794;FS=1.755;MQ=39.66;MQRankSum=-4.410e+00;QD=12.11;ReadPosRankSum=0.136;SOR=0.554;VQSLOD=-4.938e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:172,188:360:99:4434,0,4266
chr1	152190945	rs77376932	C	T	12345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.230e-01;DB;DP=429;ExcessHet=3.9794;FS=0.000;MQ=51.55;MQRankSum=2.21;NEGATIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-8.730e-01;SOR=0.639;VQSLOD=-3.549e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:210,219:429:99:5538,0,5531
chr1	152191709	rs6662450	C	G	26309.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150e-01;DB;DP=441;ExcessHet=3.9794;FS=1.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=-7.680e-01;SOR=0.544;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:214,227:441:99:6034,0,5735
chr1	152191879	rs10788828	G	A	32336.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=591;ExcessHet=3.9794;FS=1.184;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=-2.900e-01;SOR=0.601;VQSLOD=6.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:303,288:591:99:7213,0,7815
chr1	152192114	rs7520249	C	T	23742.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=371;ExcessHet=6.9897;FS=2.662;MQ=59.02;MQRankSum=5.82;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=2.62;SOR=0.923;VQSLOD=-1.438e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:180,191:371:99:5123,0,4917
chr1	152192293	rs7520375	C	T	23716.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.42;DB;DP=317;ExcessHet=3.9794;FS=0.592;MQ=55.43;MQRankSum=-9.394e+00;POSITIVE_TRAIN_SITE;QD=23.18;ReadPosRankSum=-1.500e-01;SOR=0.784;VQSLOD=-4.599e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:140,177:317:99:4595,0,3781
chr1	152192555	rs41266134	T	C	11599.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.09;DB;DP=425;ExcessHet=3.9794;FS=1.103;MQ=59.95;MQRankSum=1.37;QD=13.20;ReadPosRankSum=1.66;SOR=0.606;VQSLOD=0.685;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:223,202:425:99:5398,0,5499
chr1	152192631	rs6587647	C	T	32928.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=493;ExcessHet=3.9794;FS=0.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=-7.600e-01;SOR=0.625;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:240,253:493:99:6545,0,5915
chr1	152192687	rs6587648	T	C	48903.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=472;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=0.977;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,472:472:99:14779,1415,0
chr1	152192978	rs6587649	T	C	40427.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=423;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=0.952;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,423:423:99:13543,1268,0
chr1	152193052	rs6587650	A	G	44647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=485;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=0.782;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,485:485:99:14771,1455,0
chr1	152193121	rs6587651	G	T	28425.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.311e+00;DB;DP=466;ExcessHet=3.9794;FS=5.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=0.762;SOR=0.717;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:236,230:466:99:5993,0,6763
chr1	152193291	rs6587652	G	T	45139.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.17;DB;DP=634;ExcessHet=3.9794;FS=1.179;MQ=59.98;MQRankSum=0.00;QD=24.19;ReadPosRankSum=-6.100e-02;SOR=0.575;VQSLOD=5.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:337,297:634:99:8070,0,8451
chr1	152193544	rs7535536	A	G	24040.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=312;ExcessHet=3.9794;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.16;ReadPosRankSum=0.751;SOR=0.767;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:147,165:312:99:0|1:152193544_A_G:4274,0,3874:152193544
chr1	152193547	rs6587653	G	A	37947.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=304;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=1.819;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,304:304:99:1|1:152193544_A_G:12184,923,0:152193544
chr1	152193851	rs11204937	C	T	5915.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=117;ExcessHet=3.9794;FS=5.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=0.194;SOR=0.482;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,53:117:99:1307,0,1470
chr1	152193990	rs11204938	A	G	2444.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=1.26;SOR=0.830;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,22:34:99:653,0,324
chr1	152195579	rs74127901	G	A	2463.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=80;ExcessHet=3.9794;FS=4.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=1.08;SOR=0.422;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1057,0,814
chr1	152195728	rs34061715	AT	A	4747.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.420;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.60;ReadPosRankSum=1.61;SOR=0.564;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1639,177,0
chr1	152195851	rs370014740	TAGTC	T	529.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.42;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=1.15;SOR=0.963;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,1:4:33:33,0,176
chr1	152276149	rs77422831	C	T	11361.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=449;ExcessHet=3.9794;FS=0.000;MQ=59.70;MQRankSum=-1.507e+00;QD=12.74;ReadPosRankSum=0.381;SOR=0.639;VQSLOD=-8.273e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:239,210:449:99:5170,0,5967
chr1	152276671	rs7518080	C	T	8334.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.91;DB;DP=296;ExcessHet=1.5490;FS=4.076;MQ=55.40;MQRankSum=7.14;QD=16.03;ReadPosRankSum=-1.613e+00;SOR=1.016;VQSLOD=-4.767e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:230,66:296:99:0|1:152276659_T_C:1761,0,9996:152276659
chr1	152276772	rs72697000	C	A	10884.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478e+00;DB;DP=584;ExcessHet=3.9794;FS=1.751;MQ=58.94;MQRankSum=-8.330e-01;NEGATIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=2.77;SOR=0.818;VQSLOD=-1.545e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:319,265:584:99:5977,0,8477
chr1	152276871	rs3126066	A	G	13656.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DB;DP=466;ExcessHet=3.9794;FS=0.533;MQ=59.95;MQRankSum=-1.423e+00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.576;SOR=0.760;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:237,229:466:99:5731,0,6002
chr1	152276889	rs3126067	A	G	12334.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.110e-01;DB;DP=427;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=-1.400e-01;QD=15.02;ReadPosRankSum=2.34;SOR=0.641;VQSLOD=0.472;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:220,207:427:99:5036,0,5905
chr1	152277055	rs2065955	C	G	5675.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.50;DB;DP=219;ExcessHet=3.9794;FS=3.562;MQ=53.87;MQRankSum=6.10;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=3.78;SOR=0.528;VQSLOD=-2.414e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:137,82:219:99:2629,0,4015
chr1	152277168	rs3091276	A	G	9779.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498e+00;DB;DP=448;ExcessHet=3.9794;FS=1.777;MQ=54.21;MQRankSum=-1.760e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=1.15;SOR=0.544;VQSLOD=-1.920e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:240,208:448:99:4974,0,6133
chr1	152277345	rs2065956	C	T	12640.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=613;ExcessHet=3.9794;FS=0.531;MQ=59.88;MQRankSum=1.72;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.740;SOR=0.748;VQSLOD=2.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:368,245:613:99:6030,0,9510
chr1	152277396	rs6681433	T	C	11190.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=534;ExcessHet=3.9794;FS=2.512;MQ=59.81;MQRankSum=0.796;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.119;SOR=0.519;VQSLOD=1.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:328,206:534:99:5116,0,8770
chr1	152277717	rs9436066	C	A	6309.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125e+00;DB;DP=303;ExcessHet=3.9794;FS=13.879;MQ=52.82;MQRankSum=-4.604e+00;NEGATIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=3.15;SOR=1.032;VQSLOD=-4.279e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:188,115:303:99:2629,0,5154
chr1	152278555	rs80221306	T	C	4120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.21;DB;DP=300;ExcessHet=3.9794;FS=0.675;MQ=47.27;MQRankSum=0.465;QD=6.59;ReadPosRankSum=0.283;SOR=0.797;VQSLOD=-3.984e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:223,77:300:99:1842,0,6711
chr1	152278670	rs150427834	C	G	1171.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=1097;ExcessHet=3.9794;FS=5.251;MQ=52.20;MQRankSum=-6.608e+00;QD=0.57;ReadPosRankSum=-1.141e+00;SOR=1.412;VQSLOD=-4.297e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:994,103:1097:99:0|1:152278662_A_G:712,0,41262:152278662
chr1	152278689	rs57672167	C	A	41647.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.503e+00;DB;DP=1282;ExcessHet=3.9794;FS=2.612;MQ=52.92;MQRankSum=-6.082e+00;QD=17.21;ReadPosRankSum=-5.340e-01;SOR=0.934;VQSLOD=-3.766e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:504,778:1282:99:21858,0,13155
chr1	152278775	.	T	A	7110.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DP=1692;ExcessHet=3.9794;FS=0.000;MQ=55.21;MQRankSum=-5.306e+00;QD=2.20;SOR=0.676;VQSLOD=-5.188e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1484,208:1692:99:0|1:152278762_A_C:4245,0,63150:152278762
chr1	152278856	rs11582087	T	G	7556.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.186e+00;DB;DP=1058;ExcessHet=3.9794;FS=0.000;MQ=53.80;MQRankSum=2.23;NEGATIVE_TRAIN_SITE;QD=3.62;ReadPosRankSum=1.89;SOR=0.686;VQSLOD=-3.605e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:828,230:1058:99:4072,0,24359
chr1	152279729	rs3126072	C	T	20345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.701e+00;DB;DP=745;ExcessHet=3.9794;FS=1.101;MQ=59.94;MQRankSum=-9.170e-01;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-8.650e-01;SOR=0.591;VQSLOD=1.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:356,389:745:99:9828,0,9239
chr1	152279841	rs3126074	G	C	15675.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=511;ExcessHet=3.9794;FS=2.551;MQ=59.90;MQRankSum=-8.980e-01;QD=15.41;ReadPosRankSum=1.88;SOR=0.503;VQSLOD=0.297;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:233,278:511:99:7662,0,6000
chr1	152279920	rs55650366	A	G	9560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=277;ExcessHet=3.9794;FS=4.235;MQ=59.87;MQRankSum=0.00;QD=17.29;ReadPosRankSum=-1.570e-01;SOR=0.447;VQSLOD=5.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,151:277:99:4593,0,3617
chr1	152280032	rs71625200	T	C	9545.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=303;ExcessHet=3.9794;FS=1.744;MQ=59.94;MQRankSum=-9.140e-01;QD=14.04;ReadPosRankSum=-5.330e-01;SOR=0.566;VQSLOD=0.631;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:139,164:303:99:4351,0,3319
chr1	152280170	rs71625201	C	G	5787.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913e+00;DB;DP=242;ExcessHet=3.9794;FS=13.622;MQ=48.88;MQRankSum=0.871;QD=11.46;ReadPosRankSum=1.46;SOR=1.447;VQSLOD=-3.770e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:134,108:242:99:2744,0,3580
chr1	152280782	rs2184953	A	G	28392.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=635;ExcessHet=3.9794;FS=1.188;MQ=58.81;MQRankSum=-5.525e+00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=2.19;SOR=0.592;VQSLOD=-1.123e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:222,413:635:99:13784,0,5007
chr1	152280864	rs2184954	A	G	16873.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=390;ExcessHet=3.9794;FS=0.580;MQ=57.68;MQRankSum=-6.024e+00;QD=20.68;ReadPosRankSum=1.07;SOR=0.647;VQSLOD=-3.069e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:134,256:390:99:7866,0,3669
chr1	152281007	rs7512553	A	G	10808.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.49;DB;DP=535;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=-2.213e+00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=1.18;SOR=0.654;VQSLOD=1.12;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:380,155:535:99:0|1:152281007_A_G:5358,0,18754:152281007
chr1	152281008	rs7512554	A	G	10808.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=536;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=-2.216e+00;QD=10.86;ReadPosRankSum=1.06;SOR=0.645;VQSLOD=-5.988e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:381,155:536:99:0|1:152281007_A_G:5358,0,18754:152281007
chr1	152281039	rs7522925	G	A	6864.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=556;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=1.03;SOR=0.642;VQSLOD=6.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:394,162:556:99:3330,0,10181
chr1	152281479	rs3126079	G	T	25703.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.61;DB;DP=669;ExcessHet=3.9794;FS=1.868;MQ=59.23;MQRankSum=-2.898e+00;QD=19.82;ReadPosRankSum=1.09;SOR=0.740;VQSLOD=-1.131e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:227,442:669:99:12464,0,5088
chr1	152281621	rs34806697	T	C	8720.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750e-01;DB;DP=751;ExcessHet=3.0103;FS=1.108;MQ=59.62;MQRankSum=2.82;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-6.600e-02;SOR=0.805;VQSLOD=0.173;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:396,355:751:99:8729,0,9858
chr1	152281690	rs12407748	C	T	19855.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.77;DB;DP=820;ExcessHet=3.9794;FS=1.101;MQ=59.99;MQRankSum=1.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=1.28;SOR=0.799;VQSLOD=2.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:410,410:820:99:10158,0,9920
chr1	152281948	rs12405241	G	A	9024.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=329;ExcessHet=3.9794;FS=2.423;MQ=60.00;MQRankSum=0.00;QD=14.30;ReadPosRankSum=-9.020e-01;SOR=0.615;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:163,166:329:99:4460,0,4201
chr1	152282267	rs12405278	G	A	8587.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.920e-01;DB;DP=317;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=2.14;SOR=0.675;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:156,161:317:99:4116,0,4173
chr1	152282311	rs12407807	C	T	7900.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=280;ExcessHet=3.9794;FS=0.523;MQ=59.99;MQRankSum=1.04;QD=13.93;ReadPosRankSum=0.169;SOR=0.620;VQSLOD=0.681;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:146,134:280:99:3752,0,3836
chr1	152282917	rs11204978	G	T	5770.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644e+00;DB;DP=271;ExcessHet=3.9794;FS=1.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=1.10;SOR=0.828;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,123:271:99:2990,0,4135
chr1	152283236	rs11581433	T	C	10955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e+00;DB;DP=368;ExcessHet=3.9794;FS=1.744;MQ=57.41;MQRankSum=-8.319e+00;QD=14.55;ReadPosRankSum=1.33;SOR=0.577;VQSLOD=-5.251e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:157,211:368:99:5650,0,4107
chr1	152283283	rs11586631	C	T	11104.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=366;ExcessHet=3.9794;FS=1.104;MQ=57.50;MQRankSum=-8.655e+00;QD=15.29;ReadPosRankSum=0.140;SOR=0.601;VQSLOD=-5.096e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:158,208:366:99:5719,0,4177
chr1	152283862	rs58001094	G	C	6992.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DB;DP=250;ExcessHet=3.9794;FS=1.108;MQ=56.08;MQRankSum=-1.856e+00;NEGATIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.12;SOR=0.809;VQSLOD=-3.020e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,105:250:99:3027,0,4220
chr1	152283975	rs66831674	A	G	11176.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.740e-01;DB;DP=394;ExcessHet=3.9794;FS=0.525;MQ=55.05;MQRankSum=-1.639e+00;NEGATIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=1.41;SOR=0.652;VQSLOD=-3.165e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:197,197:394:99:5239,0,5133
chr1	152284854	rs3120653	A	G	8157.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DB;DP=295;ExcessHet=3.9794;FS=0.532;MQ=59.98;MQRankSum=-8.460e-01;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=1.31;SOR=0.629;VQSLOD=1.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:145,146:295:99:3886,0,3424
chr1	152285099	rs74129461	C	T	11262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.424e+00;DB;DP=487;ExcessHet=3.9794;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=2.000e-03;SOR=0.728;VQSLOD=5.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:252,235:487:99:5834,0,6692
chr1	152285930	rs11584340	G	A	8231.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.751e+00;DB;DP=324;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.241;SOR=0.675;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:162,162:324:99:4213,0,4365
chr1	152286002	rs2011331	T	C	10256.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=358;ExcessHet=3.9794;FS=2.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=0.723;SOR=0.919;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:177,181:358:99:4971,0,4553
chr1	152286032	rs11588170	C	T	11960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DB;DP=409;ExcessHet=3.9794;FS=6.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-7.590e-01;SOR=1.105;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:189,220:409:99:5731,0,4612
chr1	152286367	rs41267154	C	A	7848.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562e+00;DB;DP=335;ExcessHet=3.9794;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-5.570e-01;SOR=0.638;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:183,152:335:99:3921,0,4882
chr1	152287341	rs34224823	CT	C	300.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.140e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.54;ReadPosRankSum=0.061;SOR=0.859;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,10:15:85:233,0,85
chr1	152323132	rs12568784	G	T	1650.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.175e+00;DB;DP=103;ExcessHet=3.0103;FS=4.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-7.220e-01;SOR=1.216;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,58:103:99:1659,0,1387
chr1	152325732	rs12022217	G	A	7287.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e+00;DB;DP=585;ExcessHet=3.0103;FS=2.457;MQ=59.99;MQRankSum=-9.000e-02;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-2.460e+00;SOR=0.524;VQSLOD=1.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:312,273:585:99:7296,0,9131
chr1	152329435	rs2282303	C	T	2182.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DB;DP=195;ExcessHet=3.0103;FS=1.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-1.432e+00;SOR=0.579;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,88:195:99:2191,0,2686
chr1	152331240	rs3818831	G	A	621.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DB;DP=47;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-5.550e-01;SOR=0.293;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:630,0,724
chr1	152331533	rs2275264	T	G	62.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:71,0,68
chr1	152382062	rs10888486	C	T	1033.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.310e-01;DB;DP=64;ExcessHet=3.0103;FS=1.070;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=1.41;SOR=0.449;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:1042,0,964
chr1	152382120	rs3829868	C	T	1884.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=135;ExcessHet=3.0103;FS=6.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-3.020e-01;SOR=1.244;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,68:135:99:1893,0,1757
chr1	152384498	rs3215709	G	GT	578.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=1.47;SOR=1.708;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:17:221,0,17
chr1	152384759	rs7521839	A	G	913.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=82;ExcessHet=3.0103;FS=2.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-6.010e-01;SOR=1.064;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,37:82:99:922,0,1058
chr1	152384833	rs1923492	T	C	2778.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DB;DP=37;ExcessHet=3.9794;FS=2.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=1.40;SOR=0.458;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:402,0,543
chr1	152484129	rs2105117	G	A	20640.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830e-01;DB;DP=383;ExcessHet=3.9794;FS=1.152;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=0.968;SOR=0.606;VQSLOD=6.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:202,181:383:99:4192,0,5240
chr1	152487979	rs2282296	C	T	5141.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DB;DP=90;ExcessHet=3.9794;FS=2.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-1.120e+00;SOR=0.562;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1116,0,1237
chr1	152488063	rs1053588	C	T	3560.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120e-01;DB;DP=61;ExcessHet=3.9794;FS=5.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.14;ReadPosRankSum=1.61;SOR=1.144;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:716,0,960
chr1	152552285	rs512208	C	A	8561.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.611e+00;DB;DP=210;ExcessHet=6.9897;FS=0.532;MQ=57.63;MQRankSum=-1.479e+00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-6.780e-01;SOR=0.617;VQSLOD=0.400;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,99:210:99:2494,0,2914
chr1	152552461	rs4845313	C	A	1556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.118e+00;DB;DP=111;ExcessHet=3.0103;FS=0.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-2.950e-01;SOR=0.872;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,57:111:99:1565,0,1602
chr1	152636843	rs9793541	A	T	5672.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.371e+00;DB;DP=194;ExcessHet=3.9794;FS=2.460;MQ=59.88;MQRankSum=0.00;QD=12.38;ReadPosRankSum=1.36;SOR=0.903;VQSLOD=4.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,92:194:99:2402,0,3058
chr1	152637150	rs1855080	A	T	776.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.955;SOR=0.368;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:202,0,355
chr1	152659194	rs35748742	G	T	1960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.991e+00;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=-1.140e-01;SOR=1.014;VQSLOD=6.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,31:49:99:1122,0,603
chr1	152659805	rs41310873	G	A	1989.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403e+00;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.11;SOR=0.597;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,21:52:99:628,0,1039
chr1	152659848	rs41308367	A	G	1189.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-1.140e-01;SOR=1.655;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:331,0,414
chr1	152681543	rs1332496	T	C	31583.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=313;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.06;SOR=1.287;VQSLOD=4.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,313:313:99:9103,936,0
chr1	152681680	rs11269814	C	CAGCTCTGGGGGCTGCTGT	10801.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087e+00;DB;DP=163;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-4.094e+00;SOR=0.707;VQSLOD=4.30;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:84,79:163:99:3250,0,4763
chr1	152691943	rs1332499	G	A	1882.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048e+00;DB;DP=53;ExcessHet=3.9794;FS=0.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-5.010e-01;SOR=0.819;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:787,0,696
chr1	152692074	rs1332500	G	C	5400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107e+00;DB;DP=162;ExcessHet=3.9794;FS=0.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=1.01;SOR=0.634;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,77:162:99:2151,0,2501
chr1	152692472	rs873775	A	C	5132.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=198;ExcessHet=3.9794;FS=3.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.580;SOR=0.875;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,101:198:99:2562,0,2461
chr1	152692588	rs944682	A	G	5119.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921e+00;DB;DP=176;ExcessHet=3.9794;FS=1.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.735;SOR=0.643;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,96:176:99:2462,0,2045
chr1	152692781	rs3814350	G	T	2280.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.380e-01;DB;DP=77;ExcessHet=3.9794;FS=0.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-7.920e-01;SOR=0.741;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,37:77:99:988,0,1095
chr1	152692862	rs3814351	G	C	1472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DB;DP=50;ExcessHet=3.9794;FS=2.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.447;SOR=0.970;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,27:50:99:727,0,746
chr1	152692948	rs3814352	T	A	672.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.800e-01;DB;DP=23;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=1.15;SOR=1.777;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,10:23:99:0|1:152692948_T_A:381,0,484:152692948
chr1	152692952	rs3814353	G	A	719.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=21;ExcessHet=3.9794;FS=4.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.282;SOR=1.638;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,10:21:99:0|1:152692948_T_A:387,0,432:152692948
chr1	152732106	rs17612167	A	T	1265.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418e+00;DB;DP=102;ExcessHet=3.0103;FS=0.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.47;SOR=0.541;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,54:102:99:1274,0,1252
chr1	152732436	rs4845480	G	C	5610.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.81;DB;DP=109;ExcessHet=6.9897;FS=3.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-2.480e-01;SOR=0.945;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,42:109:99:1210,0,1782
chr1	152733301	rs4329520	T	A	13514.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=331;ExcessHet=6.9897;FS=0.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.145;SOR=0.735;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:182,149:331:99:4085,0,5140
chr1	152749091	rs41268480	C	T	2287.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.64;DB;DP=172;ExcessHet=3.0103;FS=0.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.392;SOR=0.753;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,80:172:99:2296,0,2407
chr1	152759678	rs1034109	C	T	8924.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=183;ExcessHet=6.9897;FS=0.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.382;SOR=0.619;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,86:183:99:2422,0,2661
chr1	152759950	rs11205106	A	G	10390.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.443e+00;DB;DP=202;ExcessHet=6.9897;FS=0.000;MQ=59.66;MQRankSum=-2.356e+00;QD=14.84;ReadPosRankSum=-1.900e-02;SOR=0.679;VQSLOD=-9.963e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:88,114:202:99:3157,0,2481
chr1	152760106	rs56313719	G	A	4171.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=358;ExcessHet=3.0103;FS=2.242;MQ=58.23;MQRankSum=-5.013e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-6.620e-01;SOR=0.575;VQSLOD=-1.086e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:188,170:358:99:4180,0,4498
chr1	152777465	rs1048535	A	G	1084.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=1.17;SOR=0.631;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:272,0,606
chr1	152777868	rs36107483	A	G	7925.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.60;DB;DP=255;ExcessHet=3.9794;FS=3.655;MQ=59.67;MQRankSum=-2.663e+00;NEGATIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.902;SOR=0.997;VQSLOD=-2.125e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:148,107:255:99:3420,0,4466
chr1	152777964	rs17624493	G	A	8907.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=385;ExcessHet=3.9794;FS=1.113;MQ=59.93;MQRankSum=-1.051e+00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-2.160e-01;SOR=0.792;VQSLOD=2.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:209,176:385:99:4134,0,5050
chr1	152778118	rs35436039	G	A	1252.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=0.718;SOR=0.538;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,16:40:99:517,0,821
chr1	152882982	.	C	CAGCAGCAGGAGGGGCAGCTGGAGCTCTCTG	1258.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.410e-01;DP=11;ExcessHet=1.5490;FS=0.000;MQ=54.99;MQRankSum=-1.282e+00;QD=31.49;ReadPosRankSum=-1.372e+00;SOR=0.976;VQSLOD=0.189;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:53:790,53,0
chr1	152944594	rs3170863	C	T	6637.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.110e+00;DB;DP=130;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=-1.750e-01;SOR=0.711;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4200,390,0
chr1	152957573	rs1611760	T	C	2215.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.52;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.510;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1287,96,0
chr1	152957832	rs1611762	C	A	6366.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.471;DB;DP=101;ExcessHet=3.9794;FS=2.928;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=0.392;SOR=0.557;VQSLOD=6.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3435,302,0
chr1	152957887	rs1611764	G	A	5937.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=89;ExcessHet=3.9794;FS=4.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=1.82;SOR=0.498;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3147,267,0
chr1	152975495	rs2075739	G	A	4649.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.735;DB;DP=65;ExcessHet=3.9794;FS=12.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-2.440e-01;SOR=1.281;VQSLOD=16.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2260,195,0
chr1	152975763	rs1977734	C	A	3689.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.601e+00;DB;DP=46;ExcessHet=3.9794;FS=6.525;MQ=59.78;MQRankSum=0.00;QD=25.45;ReadPosRankSum=-2.069e+00;SOR=0.417;VQSLOD=4.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,46:46:99:1|1:152975763_C_A:2000,141,0:152975763
chr1	152975829	rs1970328	A	G	5292.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=82;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=0.144;SOR=0.667;VQSLOD=6.47;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,82:82:99:1|1:152975763_C_A:3054,249,0:152975763
chr1	152975941	rs1055935	C	G	5512.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.246e+00;DB;DP=98;ExcessHet=3.9794;FS=13.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.50;ReadPosRankSum=-3.970e-01;SOR=0.399;VQSLOD=16.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3163,293,0
chr1	152976108	rs1015996	C	T	2060.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.829e+00;DB;DP=25;ExcessHet=3.9794;FS=1.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=2.16;SOR=1.142;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:152976108_C_T:1109,75,0:152976108
chr1	152976114	rs1015995	G	C	1960.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=23;ExcessHet=3.9794;FS=1.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=2.47;SOR=1.230;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:72:1|1:152976108_C_T:1071,72,0:152976108
chr1	153004519	rs1334850	G	T	331.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.16;ReadPosRankSum=1.47;SOR=2.494;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr1	153004652	rs1334849	G	A	1962.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.662e+00;DB;DP=20;ExcessHet=3.9794;FS=8.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.724;SOR=0.180;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:761,60,0
chr1	153004721	rs1334848	A	T	3814.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.05;DB;DP=56;ExcessHet=3.9794;FS=1.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=2.41;SOR=0.864;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1953,168,0
chr1	153004778	rs3820141	C	T	6149.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.760e-01;DB;DP=107;ExcessHet=3.9794;FS=3.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=-1.513e+00;SOR=0.957;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3362,320,0
chr1	153004809	rs3181787	T	C	7107.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.34;DB;DP=121;ExcessHet=3.9794;FS=2.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.311;SOR=0.904;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3747,363,0
chr1	153004848	rs3795381	T	C	11599.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=141;ExcessHet=3.9794;FS=3.279;MQ=59.97;MQRankSum=-1.144e+00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=0.851;SOR=0.489;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,141:141:99:1|1:153004848_T_C:6301,427,0:153004848
chr1	153004853	rs3795382	C	T	11409.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.420e-01;DB;DP=136;ExcessHet=3.9794;FS=2.509;MQ=59.94;MQRankSum=-1.115e+00;POSITIVE_TRAIN_SITE;QD=24.64;ReadPosRankSum=0.658;SOR=0.514;VQSLOD=1.77;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,136:136:99:1|1:153004848_T_C:6139,412,0:153004848
chr1	153004983	rs12195	C	T	6383.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.68;DB;DP=94;ExcessHet=3.9794;FS=6.269;MQ=59.62;MQRankSum=-9.480e-01;NEGATIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=0.428;SOR=0.436;VQSLOD=-1.409e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3127,269,0
chr1	153005156	rs2711	C	T	10437.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=177;ExcessHet=3.9794;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=1.78;SOR=0.601;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5243,530,0
chr1	153066262	rs1933388	T	C	282.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474e+00;DB;DP=18;ExcessHet=3.9794;FS=1.598;MQ=57.49;MQRankSum=-1.347e+00;NEGATIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=1.98;SOR=0.352;VQSLOD=-2.283e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:110,0,427
chr1	153085306	rs34115170	G	A	406.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=-6.230e-01;SOR=2.833;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr1	153122310	rs510277	G	A	1868.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.476e+00;DB;DP=47;ExcessHet=1.5490;FS=0.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=-7.480e-01;SOR=0.843;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1388,139,0
chr1	153122620	rs513555	T	C	3832.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=98;ExcessHet=1.5490;FS=1.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-1.494e+00;SOR=0.821;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2996,294,0
chr1	153190376	rs12062833	G	C	220.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=3.912;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	153190419	rs12058098	A	G	293.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.31;SOR=2.303;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:310,30,0
chr1	153190590	rs35221508	G	GT	2691.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=1.244;VQSLOD=5.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2708,264,0
chr1	153233488	rs150026164	C	CGGCGGT	2292.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085e+00;DB;DP=54;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=-1.541e+00;SOR=0.641;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,53:54:91:2309,91,0
chr1	153233701	rs1143390	A	C	1573.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.10;SOR=0.818;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1590,147,0
chr1	153233991	rs11272549	A	ACTCTGGCGGCGG	6363.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.300e-02;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.60;ReadPosRankSum=-1.440e-01;SOR=0.697;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2207,158,0
chr1	153234295	rs12043009	G	A	3263.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=0.4576;FS=0.000;MQ=59.84;POSITIVE_TRAIN_SITE;QD=31.38;SOR=1.146;VQSLOD=4.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3280,311,0
chr1	153234602	rs11205255	T	C	1383.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=-6.450e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=-5.970e-01;SOR=3.202;VQSLOD=-3.169e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:354,24,0
chr1	153279274	rs1655319	A	G	280.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=4.174;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr1	153279365	rs115564514	C	T	223.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.370e+00;SOR=1.270;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:232,0,310
chr1	153279462	rs377019962	TAAG	T	9387.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.352e+00;DB;DP=82;ExcessHet=3.0103;FS=0.650;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.69;ReadPosRankSum=-1.170e-01;SOR=0.621;VQSLOD=6.83;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3651,247,0
chr1	153282796	rs3006472	C	A	425.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=0.700;SOR=1.493;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
chr1	153283004	rs821423	C	T	5590.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DB;DP=64;ExcessHet=3.0103;FS=1.999;MQ=59.96;MQRankSum=-1.113e+00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=-1.045e+00;SOR=0.909;VQSLOD=2.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1979,192,0
chr1	153283179	rs3006473	A	G	3135.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.172e+00;DB;DP=38;ExcessHet=3.0103;FS=0.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=-9.200e-02;SOR=0.554;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1151,114,0
chr1	153303638	rs2987767	A	G	2416.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.003e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=-8.100e-01;SOR=0.766;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1327,120,0
chr1	153309981	rs12139503	G	A	1767.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.770e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=-6.540e-01;SOR=0.878;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:860,90,0
chr1	153310156	rs3006444	C	T	325.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.668e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=-1.981e+00;SOR=1.802;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:134,12,0
chr1	153312644	rs2771122	A	G	2989.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.563e+00;DB;DP=36;ExcessHet=3.0103;FS=8.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=0.474;SOR=0.172;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1104,108,0
chr1	153313912	rs3014859	A	G	937.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.26;ReadPosRankSum=0.914;SOR=0.613;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:267,21,0
chr1	153314153	rs3006448	C	A	4938.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;DB;DP=55;ExcessHet=3.0103;FS=2.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.98;ReadPosRankSum=-2.249e+00;SOR=0.633;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1734,165,0
chr1	153314347	rs3006449	C	T	1141.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.120e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.05;ReadPosRankSum=-6.250e-01;SOR=1.157;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
chr1	153315467	rs5777858	T	TAAG	2742.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.851e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=-1.186e+00;SOR=0.929;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:765,51,0
chr1	153315579	rs3014863	A	G	5252.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.00;DB;DP=60;ExcessHet=3.0103;FS=6.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-7.930e-01;SOR=1.249;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1844,180,0
chr1	153315784	rs1865234	T	C	2698.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=38;ExcessHet=3.0103;FS=3.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=0.071;SOR=1.649;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1311,114,0
chr1	153317370	rs3006452	C	G	250	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.10;SOR=3.912;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr1	153320125	rs2916208	A	T	405.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=0.00;SOR=0.610;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	153320159	rs2916207	G	C	693.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.005e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.92;ReadPosRankSum=-1.930e-01;SOR=1.092;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr1	153320334	rs3006457	T	C	4714.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.996;DB;DP=66;ExcessHet=3.0103;FS=2.326;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=1.01;SOR=0.958;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2133,198,0
chr1	153320372	rs3006458	T	G	6739.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=101;ExcessHet=3.0103;FS=4.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=-1.762e+00;SOR=1.015;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3104,303,0
chr1	153320581	rs3006459	T	C	2503.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.69;ReadPosRankSum=-6.430e-01;SOR=0.660;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1047,78,0
chr1	153320675	rs2916206	G	A	604.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.459;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.21;ReadPosRankSum=-6.510e-01;SOR=2.531;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	153346263	rs4772	A	G	322.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.360e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.640;SOR=1.061;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:331,0,226
chr1	153362507	rs3006488	A	G	221.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-7.880e-01;SOR=0.346;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:230,0,450
chr1	153363105	rs3795391	T	C	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=41;ExcessHet=3.0103;FS=3.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=0.821;SOR=1.565;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:725,0,386
chr1	153391396	rs3006413	G	C	56.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,120
chr1	153391555	.	TC	T	790.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DP=55;ExcessHet=3.0103;FS=1.038;MQ=56.58;MQRankSum=-2.785e+00;QD=14.37;ReadPosRankSum=-4.130e-01;SOR=0.910;VQSLOD=0.169;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,28:55:99:799,0,740
chr1	153391729	rs3006414	G	A	2631.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=234;ExcessHet=3.0103;FS=1.590;MQ=59.65;MQRankSum=-1.443e+00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-1.016e+00;SOR=0.819;VQSLOD=0.607;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:121,113:234:99:2640,0,2682
chr1	153391786	rs3014813	T	C	2915.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DB;DP=251;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=-2.032e+00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.684;SOR=0.711;VQSLOD=0.086;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:127,124:251:99:2924,0,2918
chr1	153410822	rs10888561	C	A	1940.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097e+00;DB;DP=41;ExcessHet=1.5490;FS=1.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=-1.470e-01;SOR=1.008;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,16:41:99:397,0,724
chr1	153412392	rs3006428	T	G	6860.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.533;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3616,339,0
chr1	153430249	rs35971850	TG	T	2278.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=156;ExcessHet=3.0103;FS=2.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-1.032e+00;SOR=0.962;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:76,80:156:99:2287,0,2082
chr1	153431200	rs3014836	T	C	2859.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=57.99;POSITIVE_TRAIN_SITE;QD=32.32;SOR=3.855;VQSLOD=4.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1142,87,0
chr1	153431406	rs3014837	C	G	10398.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.546e+00;DB;DP=100;ExcessHet=3.0103;FS=1.200;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.80;ReadPosRankSum=-5.990e-01;SOR=0.611;VQSLOD=6.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3330,300,0
chr1	153507959	rs659403	G	C	138.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=1.83;SOR=0.307;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:59:59,0,135
chr1	153509890	rs3795393	T	C	3447.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=160;ExcessHet=3.9794;FS=0.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=2.14;SOR=0.621;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:91,69:160:99:0|1:153509890_T_C:1758,0,3594:153509890
chr1	153509892	rs2248745	A	G	3664.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.661e+00;DB;DP=158;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-6.480e-01;SOR=0.709;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:68,90:158:99:1|0:153509890_T_C:2165,0,2596:153509890
chr1	153512347	rs4017737	A	G	156.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.43;ReadPosRankSum=1.83;SOR=0.175;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:58:58,0,137
chr1	153517092	rs138957616	GC	G	1498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.234;SOR=0.613;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,53:106:99:1507,0,1462
chr1	153517172	rs1050923	T	C	2323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=195;ExcessHet=3.0103;FS=4.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.695;SOR=0.553;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,94:195:99:2332,0,2471
chr1	153520138	rs41265162	C	T	1209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=85;ExcessHet=3.0103;FS=3.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-3.500e-02;SOR=1.219;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,41:85:99:1218,0,1150
chr1	153520203	rs41265164	G	A	1969.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=153;ExcessHet=3.0103;FS=2.070;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-7.830e-01;SOR=0.877;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,78:153:99:1978,0,1735
chr1	153520400	rs56089062	T	C	957.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=51;ExcessHet=3.0103;FS=6.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=1.99;SOR=2.368;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:966,0,602
chr1	153520520	rs56350425	T	C	140.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-7.120e-01;SOR=1.609;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:149,0,187
chr1	153520714	rs34557489	T	TC	161.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.246e+00;DB;DP=21;ExcessHet=3.0103;FS=10.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.68;ReadPosRankSum=0.747;SOR=0.018;VQSLOD=3.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,7:21:99:170,0,418
chr1	153520784	rs28718953	C	A	1660.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.971e+00;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=-1.988e+00;SOR=0.759;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,43:81:99:0|1:153520784_C_A:1669,0,1657:153520784
chr1	153520790	rs28594230	G	C	1717.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.608e+00;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.29;ReadPosRankSum=-1.023e+00;SOR=0.693;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,46:89:99:0|1:153520784_C_A:1726,0,1752:153520784
chr1	153520804	rs28452456	A	G	1306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650e-01;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.390;SOR=0.752;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,53:104:99:1315,0,1369
chr1	153520954	rs36022742	C	T	1972.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255e+00;DB;DP=136;ExcessHet=3.0103;FS=0.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=1.48;SOR=0.621;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,80:136:99:1981,0,1342
chr1	153521018	rs28548347	A	C	1042.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.525e+00;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-1.830e+00;SOR=0.769;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,41:73:99:1051,0,885
chr1	153533898	rs8401	A	G	613.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.010;SOR=0.765;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:622,0,514
chr1	153534027	rs1047325	C	T	741.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-9.210e-01;SOR=0.512;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,28:39:99:750,0,291
chr1	153534150	rs189082738	G	A	105.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.54;ReadPosRankSum=-8.420e-01;SOR=0.368;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:45:114,0,45
chr1	153587256	rs11548102	A	T	1779.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=26;ExcessHet=3.9794;FS=1.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=0.708;SOR=0.976;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:802,78,0
chr1	153587308	rs11548104	C	T	2828.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.877;DB;DP=37;ExcessHet=3.9794;FS=12.611;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=1.45;SOR=1.831;VQSLOD=1.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1227,110,0
chr1	153588208	rs9792963	G	A	2549.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.281e+00;DB;DP=38;ExcessHet=3.9794;FS=0.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.24;ReadPosRankSum=0.365;SOR=0.859;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1284,113,0
chr1	153588279	rs9792967	G	A	6055.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.159e+00;DB;DP=97;ExcessHet=3.9794;FS=0.996;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=1.90;SOR=0.608;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2895,287,0
chr1	153591652	rs9726753	G	A	644.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.203;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=0.497;SOR=1.697;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:288,21,0
chr1	153600778	rs3806233	G	A	4281.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.560e+00;DB;DP=45;ExcessHet=3.9794;FS=2.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.511;SOR=1.059;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1857,135,0
chr1	153602861	rs3790411	G	C	876.99	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.32;ReadPosRankSum=0.755;SOR=1.209;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:313,24,0
chr1	153604029	rs1046379	C	T	6134.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.010e-01;DB;DP=64;ExcessHet=3.0103;FS=8.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=0.584;SOR=0.292;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2158,192,0
chr1	153604112	rs1046381	G	A	5219.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.034e+00;DB;DP=87;ExcessHet=3.9794;FS=4.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.897;SOR=0.505;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2715,259,0
chr1	153604422	rs1128894	T	C	108.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=2.833;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	153609039	rs4845557	T	C	2277.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=46;ExcessHet=3.9794;FS=2.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=0.015;SOR=1.015;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1502,138,0
chr1	153617773	rs11680	C	G	854.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;DB;DP=76;ExcessHet=3.0103;FS=3.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-8.800e-02;SOR=1.068;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:863,0,872
chr1	153631071	rs3806234	G	A	522.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=1.28;SOR=3.737;VQSLOD=14.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:205,18,0
chr1	153635425	rs3795396	G	A	3235.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.181;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=2.14;SOR=0.692;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1340,111,0
chr1	153636468	rs369602600	CTA	C	884.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.42;ReadPosRankSum=0.347;SOR=0.395;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,7:13:99:0|1:153636468_CTA_C:261,0,212:153636468
chr1	153636471	rs372540759	CT	C	884.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.42;ReadPosRankSum=0.330;SOR=0.395;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,7:13:99:0|1:153636468_CTA_C:261,0,212:153636468
chr1	153636472	rs4515830	T	*,C	699.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.717e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.250;SOR=0.685;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,7,6:13:99:892,233,212,321,0,261
chr1	153636860	rs4351684	A	G	8489.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=141;ExcessHet=3.9794;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.487;SOR=0.666;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4692,423,0
chr1	153637617	rs3862047	G	A	1622.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;DB;DP=31;ExcessHet=3.9794;FS=2.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=-1.390e-01;SOR=1.096;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:92:854,92,0
chr1	153640665	rs10797096	G	A	1076.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.850e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.789;SOR=0.559;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:434,33,0
chr1	153642012	rs4845564	C	T	309.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr1	153642835	rs6663046	G	C	8339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=1.383;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2558,225,0
chr1	153642909	rs11265625	A	G	2774.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.303;DB;DP=43;ExcessHet=3.9794;FS=5.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=1.85;SOR=0.362;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1472,129,0
chr1	153656352	rs9662664	T	G	2541.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.23;DB;DP=38;ExcessHet=3.9794;FS=10.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=0.674;SOR=0.127;VQSLOD=18.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1404,114,0
chr1	153656405	rs9661993	C	G	1576.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DB;DP=23;ExcessHet=3.9794;FS=7.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=1.47;SOR=0.077;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:902,69,0
chr1	153660514	rs11295572	AC	A	1307.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=1.81;SOR=0.629;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:716,69,0
chr1	153661374	rs34402066	CG	C	11460.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.870e-01;DB;DP=149;ExcessHet=3.9794;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=0.182;SOR=0.489;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,149:149:99:5576,449,0
chr1	153662617	rs149726910	T	A	469.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=54.22;MQRankSum=0.00;QD=32.94;ReadPosRankSum=-6.740e-01;SOR=1.981;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:22:289,22,0
chr1	153665919	rs5777879	T	TC	1112.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.370e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=0.00;SOR=0.614;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:572,51,0
chr1	153701376	rs12074957	G	C	1111.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=2.694;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:348,30,0
chr1	153731750	rs11296120	GA	G	507.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DB;DP=18;ExcessHet=3.9794;FS=2.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=1.29;SOR=1.432;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,13:18:70:266,0,70
chr1	153743234	rs6675978	T	C	2174.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-3.160e-01;SOR=0.696;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,40:73:99:1017,0,724
chr1	153751799	rs141529824	CTG	C	6013.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730e-01;DB;DP=337;ExcessHet=3.0103;FS=3.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=0.809;SOR=0.757;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:180,157:337:99:6022,0,7306
chr1	153752065	rs12067325	A	G	366.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=18;ExcessHet=3.0103;FS=2.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.311;SOR=1.609;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:375,0,269
chr1	153752139	rs10158450	T	C	1170.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.190e-01;DB;DP=17;ExcessHet=1.5490;FS=4.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=0.376;SOR=1.706;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:252,0,299
chr1	153784029	rs12136094	G	C	89.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-7.320e-01;SOR=0.283;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:98:98,0,242
chr1	153784666	rs11264420	CT	C,CTT	781.71	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.295;DB;DP=15;ExcessHet=3.0103;FS=2.185;MQ=59.71;MQRankSum=-2.110e-01;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-1.250e-01;SOR=1.833;VQSLOD=0.486;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,8,4:15:24:168,24,86,127,0,230
chr1	153790790	rs35175263	CT	C	322.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=8;ExcessHet=6.9897;FS=4.914;MQ=59.09;MQRankSum=0.00;QD=11.52;ReadPosRankSum=0.00;SOR=3.014;VQSLOD=3.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:56:56,0,64
chr1	153800931	rs144104082	TACACACAC	T	460.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=2.10;SOR=2.712;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:46:246,0,46
chr1	153906397	rs11264621	A	G	3180.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=92;ExcessHet=6.9897;FS=5.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.240;SOR=0.452;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,41:92:99:1002,0,1214
chr1	153913684	rs2297895	C	A	859.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260e-01;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.033;SOR=0.596;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:868,0,818
chr1	153913770	rs2252508	A	G	4099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=123;ExcessHet=6.9897;FS=0.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-2.730e-01;SOR=0.625;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,61:123:99:1450,0,1514
chr1	153915881	rs12044455	C	T	69.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=2.303;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	153954674	rs10908578	T	C	1908.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=35;ExcessHet=6.9897;FS=1.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.236;SOR=0.693;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:614,0,303
chr1	153954778	rs56853500	AACAC	A	405.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290e-01;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.80;ReadPosRankSum=0.760;SOR=0.749;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:16:99:314,0,233
chr1	153964396	rs34521811	C	CAA	4330.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-02;DB;DP=60;ExcessHet=6.9897;FS=4.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.167;SOR=0.473;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,32:60:99:1292,0,1128
chr1	153967487	rs376157395	CA	C	56.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.733;DB;DP=15;ExcessHet=3.9794;FS=1.983;MQ=60.00;MQRankSum=0.00;QD=2.08;ReadPosRankSum=1.74;SOR=0.297;VQSLOD=4.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:29:29,0,221
chr1	153973171	rs11264824	C	T	106.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=2.833;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	153991711	rs12758402	G	A	103.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.484;SOR=0.223;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:93:112,0,93
chr1	153998315	.	C	A	49.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:58,0,29
chr1	154026642	rs34752019	A	G	261.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-1.056e+00;SOR=0.489;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:270,0,503
chr1	154061855	rs2066135	T	G	5494.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.34;SOR=1.565;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1333,125,0
chr1	154076366	rs7521047	T	C	412.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.125;DB;DP=14;ExcessHet=6.9897;FS=2.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=0.141;SOR=1.557;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:115,0,358
chr1	154100029	rs36097360	CT	C	38.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=12.84;SOR=2.833;VQSLOD=0.721;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:51,9,0
chr1	154108387	rs3001361	G	A	4503.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.64;SOR=1.282;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1474,146,0
chr1	154112167	rs2500223	A	C	1215.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=0.992;SOR=0.820;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:99:128,0,234
chr1	154125067	rs3001363	C	T	617.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=0.00;SOR=1.893;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:58:241,0,58
chr1	154141908	rs4845364	A	G	5687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.770e-01;DB;DP=136;ExcessHet=6.9897;FS=2.912;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.300;SOR=0.862;VQSLOD=6.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,76:136:99:2085,0,1579
chr1	154144681	rs34335016	A	T	1262.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=101;ExcessHet=3.0103;FS=5.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-5.580e-01;SOR=1.293;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,48:101:99:1271,0,1319
chr1	154145532	rs28372838	C	G	983.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181e+00;DB;DP=73;ExcessHet=3.0103;FS=1.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=1.82;SOR=0.954;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,41:73:99:992,0,813
chr1	154163526	rs11802893	G	C	285.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.432;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:294,0,290
chr1	154164082	rs3811455	C	T	367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.277;SOR=0.839;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:376,0,406
chr1	154178185	rs370938534	CT	C	120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928e+00;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.69;ReadPosRankSum=-5.710e-01;SOR=0.770;VQSLOD=5.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,5:32:25:25,0,618
chr1	154192143	rs9803862	G	A	2498.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e+00;DB;DP=57;ExcessHet=6.9897;FS=8.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-1.137e+00;SOR=0.307;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,23:57:99:625,0,1055
chr1	154192463	rs34176728	G	GT	625.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=26;ExcessHet=6.9897;FS=1.030;MQ=59.91;MQRankSum=0.00;QD=6.80;ReadPosRankSum=0.077;SOR=0.521;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,12:26:99:0|1:154192463_G_GT:246,0,299:154192463
chr1	154199543	rs4845365	T	C	2544.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.89;SOR=3.511;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:567,48,0
chr1	154207635	rs12023901	G	T	253.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.070e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.07;ReadPosRankSum=1.42;SOR=1.022;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:262,0,309
chr1	154209169	rs3762340	A	T	163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=1.09;SOR=0.693;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:172,0,185
chr1	154209490	rs2274993	T	C	743.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-7.800e-02;SOR=0.678;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,26:46:99:752,0,524
chr1	154215973	rs1194582	A	G	430.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=0.414;SOR=0.283;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:184,0,23
chr1	154218550	rs11301778	CT	C	1099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DB;DP=16;ExcessHet=6.9897;FS=1.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=0.326;SOR=1.035;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:296,0,154
chr1	154227239	rs1194604	C	A	2871.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368e+00;DB;DP=66;ExcessHet=6.9897;FS=3.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=-8.250e-01;SOR=1.034;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,36:66:99:1113,0,881
chr1	154227292	rs11412846	G	GT	2785.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-02;DB;DP=140;ExcessHet=6.9897;FS=0.851;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=0.119;SOR=0.625;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,63:140:99:1389,0,929
chr1	154228287	rs1194603	T	C	1088.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=44;ExcessHet=6.9897;FS=2.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=-1.013e+00;SOR=0.506;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:351,0,722
chr1	154231675	rs34806160	C	CT	178.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=22;ExcessHet=3.0103;FS=2.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.10;ReadPosRankSum=-1.639e+00;SOR=1.302;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,9:22:99:187,0,300
chr1	154232610	rs3828077	A	G	381.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972e+00;DB;DP=26;ExcessHet=3.0103;FS=2.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.848;SOR=0.165;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:390,0,463
chr1	154232768	rs3790614	G	A	58.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,70
chr1	154243097	rs2282227	G	A	304.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.071;SOR=1.179;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,10:14:99:0|1:154243097_G_A:313,0,124:154243097
chr1	154243115	rs1044013	C	T	760.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.960e+00;DB;DP=11;ExcessHet=1.5490;FS=4.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=0.213;SOR=0.180;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:36:1|1:154243097_G_A:524,36,0:154243097
chr1	154245142	rs11265425	T	G	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-6.260e-01;SOR=0.770;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:567,0,420
chr1	154245512	rs1194593	A	G	628.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.730e-01;DB;DP=8;ExcessHet=1.5490;FS=8.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-1.143e+00;SOR=2.368;VQSLOD=18.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:334,24,0
chr1	154245626	.	TA	T	624.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DP=19;ExcessHet=6.9897;FS=0.977;MQ=59.81;MQRankSum=0.00;QD=8.93;ReadPosRankSum=0.853;SOR=0.543;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:19:72:166,0,72
chr1	154284894	rs35800693	A	G	1119.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=71;ExcessHet=3.9794;FS=1.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=1.45;SOR=0.525;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,34:71:99:896,0,991
chr1	154285078	rs11581043	T	G	767.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DB;DP=42;ExcessHet=3.9794;FS=2.948;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=-1.366e+00;SOR=0.423;VQSLOD=5.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:333,0,711
chr1	154285487	rs7528167	A	G	4484.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.90;DB;DP=145;ExcessHet=3.9794;FS=6.151;MQ=49.30;MQRankSum=0.549;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.356;SOR=1.019;VQSLOD=-8.014e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:89,56:145:99:0|1:154285487_A_G:2014,0,4756:154285487
chr1	154285494	rs7523757	C	T	4621.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e+00;DB;DP=148;ExcessHet=3.9794;FS=5.895;MQ=50.08;MQRankSum=0.740;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.320;SOR=0.983;VQSLOD=-6.609e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:88,60:148:99:0|1:154285487_A_G:2109,0,4797:154285487
chr1	154285522	rs7514795	G	A	3321.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DB;DP=173;ExcessHet=3.9794;FS=2.236;MQ=52.56;MQRankSum=1.13;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=0.985;SOR=0.829;VQSLOD=-1.357e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,73:173:99:1620,0,2447
chr1	154293675	rs6668968	G	A	2573.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=92;ExcessHet=3.9794;FS=2.264;MQ=59.91;MQRankSum=-9.500e-01;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=1.42;SOR=0.868;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,34:92:99:834,0,1395
chr1	154294656	rs1194607	T	C	3655.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=104;ExcessHet=3.9794;FS=12.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.189;SOR=0.266;VQSLOD=16.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,53:104:99:1561,0,1559
chr1	154294805	rs1194608	T	C	389.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=-6.740e-01;SOR=1.292;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,5:6:8:177,8,0
chr1	154295592	rs6685323	C	T	3809.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=150;ExcessHet=3.9794;FS=7.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.679;SOR=0.911;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,77:150:99:2054,0,1829
chr1	154301246	rs1194611	C	A	1444.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.52;SOR=3.312;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:44:507,44,0
chr1	154303705	rs12727865	C	T	1065.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.244e+00;DB;DP=28;ExcessHet=3.9794;FS=5.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.10;ReadPosRankSum=0.436;SOR=2.215;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,18:28:99:654,0,342
chr1	154303976	rs6702754	T	C	1810.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-01;DB;DP=81;ExcessHet=3.9794;FS=9.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.628;SOR=0.289;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,45:81:99:1110,0,837
chr1	154305010	rs1209264	A	G	1922.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.69;SOR=2.303;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:594,51,0
chr1	154305190	rs12077870	G	C	1460.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450e-01;DB;DP=65;ExcessHet=3.9794;FS=0.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-1.580e-01;SOR=0.601;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,29:65:99:653,0,978
chr1	154310048	rs1760795	C	G	8757.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=156;ExcessHet=3.9794;FS=4.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=0.209;SOR=0.501;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,86:156:99:2159,0,1758
chr1	154313232	rs1194588	T	C	3219.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=3.886;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1043,81,0
chr1	154313689	rs34968830	G	A	1377.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=42;ExcessHet=3.9794;FS=5.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.25;SOR=0.255;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:755,0,522
chr1	154313764	rs35463210	C	A	522.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=-1.103e+00;SOR=0.693;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:213,0,221
chr1	154316434	rs2274988	C	T	4708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=156;ExcessHet=3.9794;FS=2.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.733;SOR=0.571;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,87:156:99:2276,0,1639
chr1	154317153	rs1194587	C	T	6880.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=106;ExcessHet=3.9794;FS=12.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=0.073;SOR=1.188;VQSLOD=17.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,60:106:99:1487,0,1222
chr1	154317418	rs1194586	T	C	4159.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DB;DP=63;ExcessHet=3.9794;FS=2.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.61;ReadPosRankSum=-1.800e-01;SOR=0.969;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,33:63:99:991,0,780
chr1	154318564	rs1194585	G	A	1111.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=9;ExcessHet=3.9794;FS=7.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=-2.310e-01;SOR=0.125;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:138,0,162
chr1	154319349	rs10664836	T	TTTTA	1021.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=10;ExcessHet=1.5490;FS=4.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=0.00;SOR=3.180;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:194,0,249
chr1	154320942	rs2297607	A	G	2662.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970e-01;DB;DP=140;ExcessHet=3.9794;FS=1.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.929;SOR=0.586;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,54:140:99:1357,0,2330
chr1	154321072	rs1194591	A	G	6739.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.06;SOR=1.034;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,64:64:99:1|1:154321072_A_G:2431,195,0:154321072
chr1	154321084	rs2297606	G	T	1581.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360e+00;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.151;SOR=0.723;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,29:59:99:0|1:154321072_A_G:826,0,909:154321072
chr1	154321623	rs41310887	G	A	574.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232e+00;DB;DP=38;ExcessHet=3.0103;FS=1.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-3.380e-01;SOR=0.452;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:583,0,480
chr1	154321663	rs12729561	C	T	434.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.874;SOR=1.414;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:276,0,227
chr1	154351073	rs16865579	T	C	3645.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=107;ExcessHet=3.9794;FS=2.054;MQ=59.75;MQRankSum=1.09;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=1.53;SOR=0.636;VQSLOD=1.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,53:107:99:1308,0,1440
chr1	154351199	rs34437053	G	A	2423.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=71;ExcessHet=3.9794;FS=0.591;MQ=59.71;MQRankSum=-1.701e+00;QD=14.69;ReadPosRankSum=0.556;SOR=0.790;VQSLOD=-7.674e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,26:71:99:778,0,1226
chr1	154409893	rs71586015	A	AT	495.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.195;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.75;ReadPosRankSum=1.01;SOR=0.618;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,5:24:58:58,0,425
chr1	154420333	rs113580743	G	A	69.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:77,0,35
chr1	154437896	rs2229238	T	C	12263.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.06;ReadPosRankSum=1.00;SOR=0.790;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,75:142:99:2235,0,1787
chr1	154442960	rs11265621	G	A	3752.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=51;ExcessHet=3.0103;FS=4.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.904;SOR=1.320;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:643,0,771
chr1	154458932	rs4845632	A	G	728.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.61;SOR=4.407;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr1	154459197	rs4845633	C	G	2611.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=1.085;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:852,78,0
chr1	154459477	rs10908840	C	T	118.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=6.9897;FS=2.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=0.385;SOR=0.654;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:66:66,0,101
chr1	154473660	rs6700296	T	C	1082.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.50;ReadPosRankSum=0.171;SOR=0.848;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:170,0,323
chr1	154473726	rs6683078	G	A	3680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.66;SOR=2.517;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1303,111,0
chr1	154474131	rs4845635	C	G	16228.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.12;SOR=0.769;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5112,477,0
chr1	154474557	rs6703672	T	C	2653.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.92;SOR=3.442;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1019,87,0
chr1	154479486	rs146563764	G	A	846.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.041e+00;DB;DP=49;ExcessHet=3.0103;FS=1.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=-1.801e+00;SOR=1.236;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,29:49:99:855,0,564
chr1	154479657	rs10654618	C	CAT	4249.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=1.711;VQSLOD=5.08;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,27:27:84:1254,84,0
chr1	154479670	rs6664608	C	T	2954.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145e+00;DB;DP=35;ExcessHet=3.0103;FS=5.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=-9.670e-01;SOR=0.274;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,15:35:99:425,0,621
chr1	154481158	rs7513603	T	C	1000.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=6.358;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr1	154492702	rs10908842	G	A	5456.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e+00;DB;DP=48;ExcessHet=3.0103;FS=6.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=-1.550e-01;SOR=0.210;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:734,0,747
chr1	154493721	rs6684225	T	C	3019.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=1.809;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:870,78,0
chr1	154494082	rs4269769	G	C	428.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=5.136;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	154514203	rs41313910	C	G	120.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.72;SOR=1.981;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:128,0,103
chr1	154514331	rs4845647	C	A	1101.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=18;ExcessHet=3.0103;FS=7.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=0.790;SOR=2.712;VQSLOD=17.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,5:18:99:142,0,410
chr1	154514942	rs72999422	G	A	55.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.990e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.60;ReadPosRankSum=-1.074e+00;SOR=0.368;VQSLOD=22.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:63:63,0,203
chr1	154515193	rs58881140	C	T	665.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.820e-01;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-4.340e-01;SOR=0.706;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:674,0,864
chr1	154516571	rs6678164	T	C	26590.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.19;SOR=1.526;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,246:246:99:1|1:154516571_T_C:9672,740,0:154516571
chr1	154516578	rs3811448	G	A	3100.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=224;ExcessHet=3.0103;FS=1.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-8.000e-01;SOR=0.790;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:110,114:224:99:0|1:154516571_T_C:3109,0,2837:154516571
chr1	154517217	rs6681207	T	C	1022.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DB;DP=66;ExcessHet=3.0103;FS=3.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-1.308e+00;SOR=0.757;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,36:66:99:1031,0,788
chr1	154517504	rs3811449	G	A	1179.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.244e+00;DB;DP=74;ExcessHet=3.0103;FS=1.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-1.839e+00;SOR=0.997;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1188,0,897
chr1	154519800	rs113168174	C	CA	545.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007e+00;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=0.181;SOR=0.922;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,18:33:99:554,0,463
chr1	154523215	rs4520411	C	T	3339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=3.767;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1039,87,0
chr1	154523588	rs10908849	T	G	2680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=3.706;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1042,81,0
chr1	154528086	rs4078519	T	C	6458.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.62;SOR=1.208;VQSLOD=4.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1917,180,0
chr1	154531090	rs368389808	TCCG	T	667.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.15;SOR=0.941;VQSLOD=6.11;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	154557685	rs9427094	C	T	1744.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996e+00;DB;DP=51;ExcessHet=3.9794;FS=0.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-3.880e-01;SOR=0.561;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:672,0,792
chr1	154559036	rs6683149	G	C	882.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.95;SOR=2.925;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:178,15,0
chr1	154561261	rs9427095	G	C	5092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=1.642;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1886,168,0
chr1	154562625	rs7532276	G	*,C	2224.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.75;QD=29.27;SOR=2.043;VQSLOD=3.59;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,10,14:24:99:985,322,276,294,0,206
chr1	154571174	rs143817514	T	TGGA	1900.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.94;SOR=5.283;VQSLOD=5.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:630,42,0
chr1	154573967	rs2229857	T	C	6965.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.89;DB;DP=136;ExcessHet=1.5490;FS=4.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=-8.950e-01;SOR=0.647;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4540,408,0
chr1	154574820	rs1466731	T	C	13651.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=0.749;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4336,418,0
chr1	154575040	rs1802645	C	T	8493.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=33.31;SOR=1.174;VQSLOD=4.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2652,246,0
chr1	154575315	rs3738030	A	C	158.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.46;SOR=1.609;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr1	154575336	rs4845381	A	G	149.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.29;SOR=1.609;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr1	154580458	rs58655370	C	A	4620.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920e+00;DB;DP=398;ExcessHet=3.0103;FS=3.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.956;SOR=0.534;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:202,196:398:99:4629,0,5099
chr1	154600372	rs6426859	A	G	17003.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=59.69;POSITIVE_TRAIN_SITE;QD=30.42;SOR=0.802;VQSLOD=3.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,165:165:99:4841,494,0
chr1	154687641	rs9919337	C	T	132.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.949;SOR=1.981;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:140,0,100
chr1	154709682	rs35539682	TG	T	500.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=-4.840e-01;SOR=0.368;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:63:92,0,63
chr1	154744852	rs1131820	A	G	8638.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.750e-01;DB;DP=116;ExcessHet=3.9794;FS=2.795;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=-3.910e-01;SOR=0.532;VQSLOD=7.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,45:116:99:1188,0,1990
chr1	154745031	rs11584403	T	G	467.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.241;SOR=0.399;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:65:65,0,141
chr1	154832304	rs4845397	T	C	4648.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=68;ExcessHet=1.5490;FS=5.372;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=0.439;SOR=1.149;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,68:68:99:1|1:154832304_T_C:2832,205,0:154832304
chr1	154832322	rs1218586	A	C	5360.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.85;DB;DP=49;ExcessHet=3.9794;FS=3.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=0.824;SOR=0.912;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,49:49:99:1|1:154832304_T_C:2205,147,0:154832304
chr1	154841376	.	ATCTC	A	314.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.36;MQRankSum=0.00;QD=14.30;ReadPosRankSum=1.20;SOR=0.540;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,267
chr1	154841415	rs57846577	TCTCTCTCTCTCACA	T	638.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=19;ExcessHet=3.9794;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.079;SOR=0.182;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:19:99:427,0,550
chr1	154842199	rs367921715	GGCT	G,GGCTGCTGCTGCTGCT	3635.22	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.323e+00;DB;DP=20;ExcessHet=3.0103;FS=3.302;MQ=59.76;MQRankSum=0.00;QD=28.91;ReadPosRankSum=-8.050e-01;SOR=0.477;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,10,8:20:99:848,541,679,320,0,294
chr1	154909268	rs1109815	A	G	1718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.08;DB;DP=52;ExcessHet=3.9794;FS=4.493;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=2.13;SOR=1.758;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:911,0,806
chr1	154917701	rs906594	A	G	3890.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=1.342;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1019,93,0
chr1	154918352	rs41264253	G	A	2380.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e+00;DB;DP=197;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=1.74;SOR=0.714;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,95:197:99:2389,0,2740
chr1	154919080	rs2061690	C	T	4969.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=171;ExcessHet=3.9794;FS=6.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-5.980e-01;SOR=0.987;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,75:171:99:2015,0,2655
chr1	154941593	rs4845401	C	G	398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=17;ExcessHet=3.9794;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=2.40;SOR=1.284;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:227,0,265
chr1	154948327	rs12087657	G	T	2533.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.04;DB;DP=77;ExcessHet=3.9794;FS=2.926;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.372;SOR=1.048;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1224,0,1136
chr1	154948434	.	GA	G	33.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278e+00;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.38;ReadPosRankSum=-5.450e-01;SOR=0.105;VQSLOD=5.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:42:42,0,267
chr1	154983539	rs6686021	C	T	2225.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.480e-01;DB;DP=38;ExcessHet=3.9794;FS=0.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.857;SOR=0.616;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1174,114,0
chr1	154987526	rs11264295	C	T	12878.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.763e+00;DB;DP=221;ExcessHet=3.9794;FS=1.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=2.65;SOR=0.573;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,117:221:99:2904,0,2788
chr1	154988957	rs2242195	A	G	17930.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=274;ExcessHet=3.9794;FS=1.926;MQ=60.00;MQRankSum=0.00;QD=21.14;ReadPosRankSum=-3.320e-01;SOR=0.902;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:151,123:274:99:3255,0,3901
chr1	154995503	rs2242193	G	A	2041.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DB;DP=28;ExcessHet=3.9794;FS=3.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=0.00;SOR=1.351;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:370,0,339
chr1	155001929	rs10908452	T	C	3187.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=37;ExcessHet=3.9794;FS=6.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=2.33;SOR=0.294;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:582,0,377
chr1	155004000	.	A	C	50.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DP=26;ExcessHet=3.0103;FS=16.561;MQ=59.36;MQRankSum=-2.239e+00;NEGATIVE_TRAIN_SITE;QD=1.94;ReadPosRankSum=-2.490e-01;SOR=3.229;VQSLOD=-4.470e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,4:26:58:0|1:155003991_T_TTG:58,0,1829:155003991
chr1	155006091	rs10908453	A	G	15009.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=282;ExcessHet=3.9794;FS=0.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=0.885;SOR=0.619;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:150,132:282:99:3165,0,3573
chr1	155006999	rs6680600	C	T	9097.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.947e+00;DB;DP=131;ExcessHet=3.9794;FS=1.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=0.147;SOR=0.559;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,77:131:99:1993,0,1472
chr1	155007293	rs4845404	C	T	1874.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=0.962;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=1.50;SOR=0.462;VQSLOD=2.25;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,9:21:99:0|1:155007293_C_T:322,0,719:155007293
chr1	155007302	rs4845405	C	A	1689.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.84;MQRankSum=0.674;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=2.20;SOR=1.255;VQSLOD=0.921;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:155007293_C_T:306,0,638:155007293
chr1	155012778	.	CA	C	362.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DP=13;ExcessHet=6.9897;FS=1.347;MQ=59.46;MQRankSum=0.00;QD=7.56;ReadPosRankSum=-5.680e-01;SOR=1.051;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:63:63,0,114
chr1	155019710	rs11264300	A	C	4589.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=91;ExcessHet=3.9794;FS=3.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-7.950e-01;SOR=0.520;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,45:91:99:1203,0,1094
chr1	155020836	rs11264301	C	T	458.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.58;ReadPosRankSum=-1.150e+00;SOR=1.739;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:110,0,27
chr1	155021893	.	AT	A	928.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DP=27;ExcessHet=3.9794;FS=1.417;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-1.082e+00;SOR=1.271;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:27:99:185,0,240
chr1	155026114	rs6660884	C	T	2637.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.548e+00;DB;DP=36;ExcessHet=3.0103;FS=7.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.67;ReadPosRankSum=-1.058e+00;SOR=0.121;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1281,108,0
chr1	155026942	rs6427128	A	C	5679.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.02;SOR=1.199;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1866,174,0
chr1	155028522	rs11264302	G	A	22419.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.722e+00;DB;DP=290;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=-9.810e-01;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=-4.600e-02;SOR=0.739;VQSLOD=2.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,290:290:99:8470,863,0
chr1	155030557	rs11264303	A	C	31936.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693e+00;DB;DP=449;ExcessHet=3.0103;FS=0.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.150;SOR=0.742;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,448:449:99:14081,1324,0
chr1	155033317	rs11264304	T	C	9191.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=133;ExcessHet=3.0103;FS=5.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=0.597;SOR=1.048;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,58:133:99:1422,0,1796
chr1	155033334	rs12743272	G	A	1564.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=117;ExcessHet=3.0103;FS=1.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-2.720e-01;SOR=0.525;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,66:117:99:1573,0,1284
chr1	155033918	rs41264285	C	T	2964.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831e+00;DB;DP=113;ExcessHet=3.9794;FS=0.498;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.788;SOR=0.630;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,51:113:99:1172,0,1745
chr1	155034632	rs45444697	C	G	844.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161e+00;DB;DP=26;ExcessHet=3.9794;FS=1.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.117;SOR=0.988;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,21:26:99:638,0,128
chr1	155057499	rs3766918	A	G	6453.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=81;ExcessHet=3.0103;FS=2.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.18;ReadPosRankSum=-5.140e-01;SOR=0.476;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2746,243,0
chr1	155100265	rs11264331	A	G	220.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.55;SOR=2.584;VQSLOD=18.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:121,12,0
chr1	155106550	rs9297	A	G	7636.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=135;ExcessHet=3.9794;FS=3.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=0.753;SOR=0.993;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4461,405,0
chr1	155106697	rs12904	G	A	2064.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.696;DB;DP=29;ExcessHet=3.9794;FS=0.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=1.13;SOR=0.906;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1063,87,0
chr1	155108287	rs11264333	G	A	1776.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.930e+00;DB;DP=21;ExcessHet=3.9794;FS=2.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=-5.400e-02;SOR=0.473;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:735,63,0
chr1	155108663	rs56367425	A	AG	3810.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=6.753;VQSLOD=7.27;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1207,114,0
chr1	155142210	rs4421576	A	G	7395.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590e+00;DB;DP=83;ExcessHet=3.0103;FS=3.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.56;ReadPosRankSum=-5.670e-01;SOR=0.461;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2733,248,0
chr1	155142229	rs4276914	G	A	7263.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;DB;DP=83;ExcessHet=3.0103;FS=4.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.37;ReadPosRankSum=-1.140e-01;SOR=0.443;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2760,249,0
chr1	155148781	rs4971059	G	A	3068.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.45;DB;DP=39;ExcessHet=3.9794;FS=4.329;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=0.577;SOR=1.431;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1408,117,0
chr1	155149718	rs3814316	G	A	19146.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=233;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=-2.730e-01;SOR=0.647;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,233:233:99:7778,699,0
chr1	155151493	rs11264341	C	T	1617.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.648e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.02;ReadPosRankSum=-1.980e+00;SOR=3.056;VQSLOD=19.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:44:538,44,0
chr1	155154509	rs143128193	C	T	1511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.941e+00;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.28;ReadPosRankSum=-5.440e-01;SOR=0.736;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,65:147:99:1520,0,2307
chr1	155162067	rs4072037	C	T	7726.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.79;DB;DP=83;ExcessHet=3.0103;FS=0.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=-5.500e-02;SOR=0.649;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2882,249,0
chr1	155172379	rs2066981	G	A	2357.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.600e-01;DB;DP=19;ExcessHet=3.0103;FS=1.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=-1.724e+00;SOR=0.465;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:666,57,0
chr1	155173374	rs185081382	G	A	775.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DB;DP=60;ExcessHet=3.0103;FS=1.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-1.406e+00;SOR=0.958;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:784,0,681
chr1	155174376	.	CA	C	384.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DP=25;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=4.53;ReadPosRankSum=-6.970e-01;SOR=0.696;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,7:25:76:76,0,395
chr1	155175892	rs914615	A	G	1242.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.88;ReadPosRankSum=0.566;SOR=1.981;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:437,30,0
chr1	155178782	rs760077	A	T	14212.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.780;DB;DP=155;ExcessHet=3.0103;FS=0.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=-1.068e+00;SOR=0.885;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:5053,465,0
chr1	155181843	rs2974935	G	T	3740.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.620e-01;DB;DP=44;ExcessHet=3.0103;FS=2.051;MQ=58.33;MQRankSum=-1.130e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.80;ReadPosRankSum=1.14;SOR=1.078;VQSLOD=-1.550e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,43:44:91:1380,91,0
chr1	155182164	rs2075570	C	T	17684.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.142;DB;DP=198;ExcessHet=3.0103;FS=0.682;MQ=57.25;MQRankSum=-5.990e-01;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=-1.680e-01;SOR=0.618;VQSLOD=-3.904e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,197:198:99:6166,546,0
chr1	155184057	rs114312440	G	A	866.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.91;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=47.57;MQRankSum=-3.992e+00;QD=20.64;ReadPosRankSum=-1.210e-01;SOR=1.005;VQSLOD=-3.304e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr1	155184975	rs140081212	A	G	21042.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=263;ExcessHet=3.0103;FS=3.483;MQ=55.75;MQRankSum=-2.394e+00;NEGATIVE_TRAIN_SITE;QD=26.84;ReadPosRankSum=-9.040e-01;SOR=0.940;VQSLOD=-2.064e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,263:263:99:8397,787,0
chr1	155186729	rs28445596	T	C	9716.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.360;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=59.00;MQRankSum=-9.920e-01;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=0.865;SOR=0.705;VQSLOD=0.639;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3634,354,0
chr1	155186742	rs1057941	G	A	8489.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.230e-01;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=58.49;MQRankSum=-9.320e-01;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=0.753;SOR=0.745;VQSLOD=1.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3096,318,0
chr1	155202689	rs10796940	A	C	5143.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=85;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.789;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=-4.590e-01;SOR=0.677;VQSLOD=2.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2942,255,0
chr1	155203060	rs56310840	G	A	9038.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.77;DB;DP=159;ExcessHet=3.9794;FS=0.000;MQ=56.11;MQRankSum=0.785;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=-1.960e-01;SOR=0.688;VQSLOD=-8.624e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4945,476,0
chr1	155205331	rs28373017	T	C	2512.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.39;DB;DP=28;ExcessHet=3.9794;FS=2.805;MQ=42.82;MQRankSum=-3.958e+00;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=0.637;SOR=0.457;VQSLOD=-2.547e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1140,84,0
chr1	155205669	rs28559737	G	T	23797.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MQ=54.18;POSITIVE_TRAIN_SITE;QD=34.09;SOR=1.006;VQSLOD=3.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,208:208:99:7244,624,0
chr1	155206341	rs9628662	T	G	4173.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.086e+00;DB;DP=86;ExcessHet=3.9794;FS=0.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-1.191e+00;SOR=0.600;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2613,247,0
chr1	155207549	rs762488	T	C	1574.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=1.26;SOR=0.653;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:743,60,0
chr1	155208647	rs7416991	T	G	2759.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=57.30;NEGATIVE_TRAIN_SITE;QD=29.14;SOR=8.608;VQSLOD=5.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:796,57,0
chr1	155209360	rs2075569	C	T	2811.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.821;SOR=0.948;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1357,108,0
chr1	155217435	.	AGG	A	2596.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.267;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.92;ReadPosRankSum=0.300;SOR=0.641;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:155217435_AGG_A:1485,99,0:155217435
chr1	155217438	rs199735676	A	ATT	2596.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.890e-01;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.23;ReadPosRankSum=-1.260e-01;SOR=0.693;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:155217435_AGG_A:1485,99,0:155217435
chr1	155218168	rs2075568	T	C	11665.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.11;DB;DP=195;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=2.01;SOR=0.712;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,195:195:99:6640,585,0
chr1	155218365	rs734073	T	C	2186.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=29;ExcessHet=3.9794;FS=2.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=-4.980e-01;SOR=0.335;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1080,87,0
chr1	155218446	rs734074	A	G	912.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.854;DB;DP=14;ExcessHet=3.9794;FS=2.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.67;ReadPosRankSum=1.61;SOR=0.174;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:509,42,0
chr1	155219868	rs741756	C	A	221.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=1.15;SOR=1.402;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
chr1	155221837	rs2072647	C	A	2044.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330e+00;DB;DP=42;ExcessHet=3.9794;FS=0.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=1.35;SOR=0.804;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1290,126,0
chr1	155224091	rs2075566	C	A	5619.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.469e+00;DB;DP=89;ExcessHet=3.9794;FS=0.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-3.400e-01;SOR=0.655;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3100,267,0
chr1	155224301	rs2242577	C	A	8027.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.029e+00;DB;DP=146;ExcessHet=3.9794;FS=1.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=-3.090e-01;SOR=0.614;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4714,438,0
chr1	155227642	rs34278239	AT	A	208.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.10;SOR=2.833;VQSLOD=6.18;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:114,12,0
chr1	155230131	rs1142287	C	T	6300.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.38;DB;DP=94;ExcessHet=3.9794;FS=1.464;MQ=59.97;MQRankSum=0.975;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.043;SOR=0.610;VQSLOD=2.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3155,282,0
chr1	155230705	rs60762712	GT	G	1256.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.320e-01;DB;DP=24;ExcessHet=3.9794;FS=2.029;MQ=59.96;MQRankSum=0.00;QD=16.76;ReadPosRankSum=-1.850e-01;SOR=1.463;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,23:24:45:595,45,0
chr1	155231545	rs2242576	T	G	5932.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=86;ExcessHet=3.9794;FS=1.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=0.159;SOR=0.798;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3010,258,0
chr1	155232074	rs1046188	C	T	813.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.051e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=-9.400e-02;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:251,21,0
chr1	155234821	rs1076556	A	G	155	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=3.258;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr1	155235493	rs1078699	T	C	768.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.875;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.63;ReadPosRankSum=-4.800e-01;SOR=1.536;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:414,30,0
chr1	155237639	rs34395206	C	T	403.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.792;SOR=0.277;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:96:96,0,223
chr1	155239624	rs2361543	G	A	6367.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.910e-01;DB;DP=95;ExcessHet=3.9794;FS=3.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=-4.100e-01;SOR=0.490;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3124,284,0
chr1	155241103	rs2236864	A	G	283.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=1.65;SOR=0.582;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:218,18,0
chr1	155247707	rs12749306	G	T	1638.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.187e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.01;ReadPosRankSum=-2.350e-01;SOR=0.793;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:790,57,0
chr1	155253583	rs7520184	G	A	1150.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.134e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=-3.040e-01;SOR=0.278;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:428,33,0
chr1	155255837	rs11264352	T	C	1580.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.15;DB;DP=21;ExcessHet=3.9794;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=1.49;SOR=1.142;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:765,63,0
chr1	155255906	rs11264353	G	C	642.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=1.01;SOR=1.981;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:294,24,0
chr1	155257492	rs11264355	C	G	3595.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=56;ExcessHet=3.9794;FS=0.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=0.316;SOR=0.645;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1938,157,0
chr1	155260350	rs1052177	A	G	6149.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.900e-02;DB;DP=109;ExcessHet=3.9794;FS=1.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.463;SOR=0.579;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3373,326,0
chr1	155260383	rs1052176	G	T	7607.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=144;ExcessHet=3.9794;FS=2.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=1.35;SOR=0.508;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4360,432,0
chr1	155265177	rs2071053	A	G	12308.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.000e-01;DB;DP=194;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=3.05;SOR=0.684;VQSLOD=21.88;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,194:194:99:6380,584,0
chr1	155269776	rs3020781	A	G	1944.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.87;DB;DP=32;ExcessHet=3.9794;FS=0.961;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=1.11;SOR=0.960;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1105,95,0
chr1	155279482	rs2297480	T	G	518.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=12;ExcessHet=3.9794;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=1.50;SOR=0.141;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:391,36,0
chr1	155280104	rs35556344	C	CT	3483.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=137;ExcessHet=6.9897;FS=0.584;MQ=59.85;MQRankSum=-1.245e+00;QD=9.84;ReadPosRankSum=-5.840e-01;SOR=0.626;VQSLOD=0.517;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,81:137:99:1930,0,543
chr1	155280164	rs11264358	T	C	4838.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.358e+00;DB;DP=69;ExcessHet=3.9794;FS=3.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=-4.820e-01;SOR=1.240;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2425,207,0
chr1	155289545	rs11264361	T	G	4129.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.800e-02;DB;DP=68;ExcessHet=3.9794;FS=2.234;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=-3.600e-01;SOR=0.543;VQSLOD=6.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2040,204,0
chr1	155291431	rs12741581	C	T	688.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299e+00;DB;DP=48;ExcessHet=3.0103;FS=10.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-1.796e+00;SOR=0.060;VQSLOD=19.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,25:48:99:697,0,775
chr1	155294274	rs914616	A	G	14646.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.33;SOR=1.636;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4745,449,0
chr1	155294772	rs4971075	A	G	10500.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=30.54;SOR=0.866;VQSLOD=4.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3321,262,0
chr1	155300097	rs35117735	G	A	533.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.182e+00;DB;DP=27;ExcessHet=3.0103;FS=2.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=-1.441e+00;SOR=0.278;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,18:27:99:542,0,325
chr1	155311658	rs80187273	C	T	551.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743e+00;DB;DP=30;ExcessHet=3.0103;FS=1.938;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-1.014e+00;SOR=0.380;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:560,0,296
chr1	155313047	rs4971051	T	C	2579.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=3.105;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:610,57,0
chr1	155326924	rs11264364	T	A	200.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.45;SOR=3.912;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr1	155330237	.	AT	A	100.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190e-01;DP=38;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=1.32;ReadPosRankSum=-1.082e+00;SOR=0.573;VQSLOD=4.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,5:38:14:14,0,668
chr1	155408635	rs4971053	T	C	8818.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.78;SOR=0.746;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3126,290,0
chr1	155429490	rs10796946	A	T	1689.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=23;ExcessHet=3.9794;FS=9.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=0.566;SOR=0.136;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:836,69,0
chr1	155429725	rs10908466	A	C	1462.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.62;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=-3.980e-01;SOR=0.562;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:631,54,0
chr1	155532316	rs12403379	T	C	21992.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.13;SOR=1.103;VQSLOD=19.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,158:158:99:1|1:155532316_T_C:7012,479,0:155532316
chr1	155532325	rs12403380	T	C	22208.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.31;SOR=1.179;VQSLOD=19.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,157:157:99:1|1:155532316_T_C:7151,479,0:155532316
chr1	155532332	rs34869594	T	C	23160.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.54;SOR=1.273;VQSLOD=18.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,163:163:99:1|1:155532316_T_C:7567,512,0:155532316
chr1	155532341	rs61812107	T	C	22608.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.29;SOR=1.331;VQSLOD=18.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,170:170:99:1|1:155532316_T_C:7515,515,0:155532316
chr1	155560679	rs369096071	CAA	C	2249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083e+00;DB;DP=134;ExcessHet=3.0103;FS=3.122;MQ=59.77;MQRankSum=-1.096e+00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.235;SOR=0.705;VQSLOD=1.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:74,60:134:99:2258,0,3082
chr1	155581311	rs141265144	T	C	4068.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=102;ExcessHet=6.9897;FS=1.319;MQ=40.40;MQRankSum=-2.025e+00;QD=12.64;ReadPosRankSum=-4.520e-01;SOR=0.721;VQSLOD=-5.000e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,50:102:99:1238,0,1199
chr1	155585135	.	C	CA	84.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DP=11;ExcessHet=3.9794;FS=5.699;MQ=60.00;MQRankSum=0.00;QD=3.24;ReadPosRankSum=-6.100e-02;SOR=0.030;VQSLOD=4.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,2:11:17:17,0,177
chr1	155618415	rs5777949	CT	C	11264.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=56.46;POSITIVE_TRAIN_SITE;QD=34.24;SOR=0.788;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2766,243,0
chr1	155618630	rs2048431	G	A	436.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-7.100e-02;SOR=0.315;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,111
chr1	155630752	rs3738590	A	G	4852.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DB;DP=113;ExcessHet=6.9897;FS=0.390;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.16;SOR=0.732;VQSLOD=6.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,48:113:99:1292,0,1634
chr1	155631307	rs367914660	AAC	A,AACACACACACAC	953.35	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.430e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=58.56;MQRankSum=-2.300e-01;QD=22.70;ReadPosRankSum=0.114;SOR=0.997;VQSLOD=2.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,4,3:11:54:230,134,176,54,0,197
chr1	155658085	rs2666826	T	C	6060.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=146;ExcessHet=6.9897;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=0.182;SOR=0.751;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,70:146:99:1874,0,1739
chr1	155658341	rs678157	T	C	3205.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748e+00;DB;DP=81;ExcessHet=6.9897;FS=1.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.577;SOR=0.583;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1059,0,1068
chr1	155658940	rs4824	T	G	1209.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=24;ExcessHet=6.9897;FS=2.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-8.550e-01;SOR=0.986;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:423,0,270
chr1	155679543	rs372695062	C	CT	102.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DB;DP=54;ExcessHet=3.9794;FS=0.973;MQ=60.00;MQRankSum=0.00;QD=0.95;ReadPosRankSum=0.811;SOR=0.880;VQSLOD=5.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,8:54:39:39,0,1012
chr1	155686739	rs377724521	CA	C	246.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706e+00;DB;DP=27;ExcessHet=6.9897;FS=4.096;MQ=59.76;MQRankSum=0.00;QD=3.80;ReadPosRankSum=0.625;SOR=0.283;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,8:27:99:100,0,345
chr1	155691191	rs71862030	GTA	G	166.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.16;ReadPosRankSum=1.83;SOR=0.551;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,127
chr1	155695904	rs377658512	CT	C	159.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=34;ExcessHet=6.9897;FS=3.180;MQ=59.90;MQRankSum=0.00;QD=2.39;ReadPosRankSum=0.00;SOR=1.479;VQSLOD=4.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,6:34:58:58,0,504
chr1	155701055	.	CA	C	30.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DP=39;ExcessHet=3.0103;FS=1.223;MQ=59.98;MQRankSum=0.00;QD=0.78;ReadPosRankSum=0.083;SOR=0.900;VQSLOD=5.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:33,6:39:39:39,0,685
chr1	155702024	rs202209826	C	CT	998.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038e+00;DB;DP=31;ExcessHet=6.9897;FS=1.990;MQ=59.87;MQRankSum=0.00;QD=12.33;ReadPosRankSum=-7.190e-01;SOR=0.433;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,26:31:39:527,0,39
chr1	155702111	rs9426933	T	C	544.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.93;ReadPosRankSum=-3.000e-03;SOR=1.828;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,9:10:13:324,0,13
chr1	155715641	rs11264409	G	A	1257.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=30;ExcessHet=6.9897;FS=0.783;MQ=46.36;MQRankSum=-4.940e-01;QD=13.82;ReadPosRankSum=0.042;SOR=0.807;VQSLOD=-3.759e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:407,0,357
chr1	155722557	rs4278368	G	A	653.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=13;ExcessHet=6.9897;FS=3.117;MQ=58.80;MQRankSum=-1.221e+00;NEGATIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=0.431;SOR=2.303;VQSLOD=-1.467e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:216,0,173
chr1	155723297	rs6427286	T	C	620.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.456;SOR=0.593;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:268,0,167
chr1	155735012	rs2297775	T	C	5989.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=140;ExcessHet=6.9897;FS=0.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.903;SOR=0.730;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,66:140:99:1723,0,1993
chr1	155737385	rs849712	C	T	3148.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=49.99;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.426;VQSLOD=1.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:938,90,0
chr1	155737425	rs10538735	AACAC	A	1288.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=55.10;MQRankSum=-1.104e+00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.398;SOR=0.795;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:297,0,522
chr1	155746340	rs60525991	CT	C	3652.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.443e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=-1.648e+00;SOR=0.847;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1379,150,0
chr1	155753676	rs822019	A	G	1432.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=32.56;SOR=1.662;VQSLOD=5.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:411,36,0
chr1	155754117	rs822020	G	A	2145.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=2.265;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:471,42,0
chr1	155755097	rs822021	G	A	5226.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.57;SOR=1.026;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1278,122,0
chr1	155755239	rs822022	T	C	1716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=2.746;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:455,42,0
chr1	155774599	rs822016	T	C	3097.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.05;SOR=7.353;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:155774574_GA_G:773,60,0:155774574
chr1	155783763	rs822012	C	T	1487.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=2.252;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:62:610,62,0
chr1	155784372	rs822013	G	A	1430.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.49;SOR=5.838;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:401,33,0
chr1	155785578	rs148569012	CAACT	C	17041.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=1.131;VQSLOD=4.76;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,116:116:99:5204,349,0
chr1	155822971	rs822490	C	T	1559.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=35;ExcessHet=6.9897;FS=11.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.392;SOR=2.715;VQSLOD=13.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,12:35:99:382,0,668
chr1	155823002	rs822491	T	C	5251.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.81;SOR=3.273;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1798,159,0
chr1	155829360	rs1749412	C	A	3068.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=5.838;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1025,78,0
chr1	155829511	rs3820594	C	T	6313.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.816e+00;DB;DP=156;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-1.180e-01;SOR=0.654;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,75:156:99:1834,0,2098
chr1	155837865	rs822522	G	C	9562.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=30.95;SOR=0.838;VQSLOD=4.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3413,333,0
chr1	155838267	rs822521	T	C	18010.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.48;SOR=1.596;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5604,508,0
chr1	155838796	rs822520	T	C	645.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=4.174;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr1	155850558	rs822508	T	C	2240.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213e+00;DB;DP=42;ExcessHet=6.9897;FS=2.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.184;SOR=1.042;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,27:42:99:737,0,351
chr1	155850811	rs822509	G	A	397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=1.15;SOR=0.223;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:117,0,31
chr1	155870416	rs1749409	G	A	11211.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.60;ReadPosRankSum=-6.090e-01;SOR=0.513;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,111:113:99:3875,290,0
chr1	155873960	rs1765275	A	G	1313.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=5.421;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:354,24,0
chr1	155880159	rs867549	T	C	1501.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e-01;DB;DP=35;ExcessHet=6.9897;FS=2.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.663;SOR=1.061;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:383,0,476
chr1	155880391	rs867550	T	C	5486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.000e-03;DB;DP=111;ExcessHet=6.9897;FS=1.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-3.130e-01;SOR=0.610;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,58:111:99:1602,0,1618
chr1	155880573	rs493446	C	G	13102.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.60;SOR=1.462;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:4101,363,0
chr1	155880760	rs5777961	C	CA	3024.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=2.494;VQSLOD=5.18;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:69:918,69,0
chr1	155880952	rs490498	G	A	227.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=-5.980e-01;SOR=0.223;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,100
chr1	155891045	rs625658	A	C	1219.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=27;ExcessHet=6.9897;FS=1.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.864;SOR=0.941;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:498,0,301
chr1	155891857	rs34107786	A	AT	351.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.64;ReadPosRankSum=-9.700e-01;SOR=0.897;VQSLOD=6.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,4:22:63:63,0,276
chr1	155891877	rs4020747	C	CAG	2610.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.72;POSITIVE_TRAIN_SITE;QD=31.39;SOR=3.767;VQSLOD=6.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:971,66,0
chr1	155891936	.	CTTTT	C	190.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.85;ReadPosRankSum=0.967;SOR=1.402;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:23:81,0,23
chr1	155895155	rs822502	T	C	1140.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=4.407;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:370,27,0
chr1	155899020	rs539602	A	T	1333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-1.400e-02;SOR=0.665;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:317,0,363
chr1	155903310	rs4661150	T	C	2966.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=36.04;SOR=2.642;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1000,81,0
chr1	155903408	rs4661151	C	T	2077.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DB;DP=67;ExcessHet=6.9897;FS=3.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.232;SOR=0.912;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,26:67:99:625,0,1080
chr1	155904177	rs2275079	T	C	36274.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=363;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.41;SOR=0.827;VQSLOD=4.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,363:363:99:11222,1088,0
chr1	155904392	rs2275081	G	A	5004.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=7.428;VQSLOD=24.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1069,81,0
chr1	155912486	rs2152051	T	C	32765.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=350;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=1.206;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,350:350:99:10592,1050,0
chr1	155917389	rs41264995	G	C	55.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=-1.834e+00;SOR=0.307;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,146
chr1	155917880	rs1010033	T	A	18408.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=1.257;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,208:208:99:5988,623,0
chr1	155922195	rs12081057	C	T	627.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=40;ExcessHet=3.0103;FS=3.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=0.081;SOR=1.396;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:636,0,443
chr1	155924505	rs4661162	A	G	711.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.47;SOR=5.892;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:221,18,0
chr1	155927752	rs2364403	G	A	3172.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940e-01;DB;DP=79;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-6.720e-01;SOR=0.660;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,28:79:99:743,0,1439
chr1	155928232	rs2364404	T	C	2963.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=1.681;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:69:1|1:155928232_T_C:997,69,0:155928232
chr1	155928242	rs2886069	C	T	2953.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=1.897;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:155928232_T_C:984,69,0:155928232
chr1	155931266	rs1964951	T	C	1247.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.82;POSITIVE_TRAIN_SITE;QD=36.47;SOR=6.932;VQSLOD=5.45;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,9:9:27:374,27,0
chr1	155931368	rs4661175	G	A	2330.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594e+00;DB;DP=72;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.174e+00;SOR=0.643;VQSLOD=6.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,31:72:99:708,0,1224
chr1	155933135	.	CT	C	253.96	PASS	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.36;QD=19.54;SOR=5.421;VQSLOD=3.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:14:74,14,0
chr1	155934683	rs11295795	CA	C	477.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.970e-01;DB;DP=34;ExcessHet=6.9897;FS=1.233;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.289;SOR=0.495;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,7:34:99:135,0,338
chr1	155935244	rs2297649	C	A	2798.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858e+00;DB;DP=57;ExcessHet=6.9897;FS=0.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.592;SOR=0.697;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,22:57:99:537,0,1042
chr1	155947930	rs1889533	C	T	321.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.00;SOR=0.914;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:19:192,0,19
chr1	155955076	rs4661216	A	G	4575.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=1.318;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1490,144,0
chr1	155981310	rs11288216	AT	A	235.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.11;SOR=4.615;VQSLOD=5.35;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chr1	155981489	rs1475766	C	G	2107.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.52;DB;DP=42;ExcessHet=3.9794;FS=8.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=-4.800e-01;SOR=1.488;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:536,0,631
chr1	156007177	rs2095402	A	G	640.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.51;ReadPosRankSum=0.524;SOR=1.101;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:34:34,0,99
chr1	156011444	rs2297792	T	C	5169.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013e+00;DB;DP=59;ExcessHet=3.0103;FS=0.691;MQ=58.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=-3.150e-01;SOR=0.620;VQSLOD=1.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,25:59:99:499,0,792
chr1	156013676	rs34673835	C	T	1245.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253e+00;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-3.800e-02;SOR=0.628;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,48:82:99:1254,0,953
chr1	156021891	rs10796957	C	T	371.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.48;SOR=4.615;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr1	156025096	rs7541	C	T	1786.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730e-01;DB;DP=164;ExcessHet=3.0103;FS=4.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-5.450e-01;SOR=0.410;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,74:164:99:1795,0,2412
chr1	156027550	rs6427299	C	T	142.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-1.440e-01;SOR=0.368;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:151,0,285
chr1	156107534	rs4641	C	T	725.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=-2.845e+00;SOR=0.730;VQSLOD=22.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,28:50:99:734,0,563
chr1	156108510	rs142000963	C	T	1953.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=178;ExcessHet=3.0103;FS=3.501;MQ=60.00;MQRankSum=0.00;QD=10.97;ReadPosRankSum=-5.600e-02;SOR=0.481;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,79:178:99:1962,0,2527
chr1	156131095	rs201004039	C	CGGGGCGG	836.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.35;SOR=3.611;VQSLOD=4.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:27:369,27,0
chr1	156133038	rs7555253	T	C	1751.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=43;ExcessHet=3.9794;FS=0.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=1.49;SOR=0.833;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:718,0,511
chr1	156146218	rs12401573	C	T	1702.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920e-01;DB;DP=75;ExcessHet=3.9794;FS=1.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.270;SOR=0.541;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,31:75:99:812,0,1275
chr1	156163906	rs41265025	C	T	759.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=22;ExcessHet=3.9794;FS=4.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.756;SOR=0.242;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:331,0,321
chr1	156169610	rs2072499	A	G	2884.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.45;DB;DP=40;ExcessHet=6.9897;FS=6.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-1.920e-01;SOR=1.273;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,17:40:99:587,0,630
chr1	156182710	rs2241107	T	C	1470.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872e+00;DB;DP=31;ExcessHet=6.9897;FS=1.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-6.500e-02;SOR=0.373;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,9:31:99:275,0,731
chr1	156195205	rs2758600	C	T	1991.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=41;ExcessHet=6.9897;FS=2.344;MQ=59.90;MQRankSum=-7.920e-01;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.804;SOR=1.119;VQSLOD=1.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,24:41:99:688,0,449
chr1	156202173	rs1052053	A	G	5189.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178e+00;DB;DP=156;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.600e-01;SOR=0.688;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,69:156:99:1608,0,2253
chr1	156206121	rs1052067	G	A	14976.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582e+00;DB;DP=409;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-6.970e-01;SOR=0.704;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:191,218:409:99:5480,0,5167
chr1	156215562	rs2075166	G	A	4687.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271e+00;DB;DP=221;ExcessHet=3.9794;FS=4.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=-4.000e-02;SOR=0.467;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,101:221:99:2370,0,3113
chr1	156215899	rs2075165	G	A	10421.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.235;DB;DP=138;ExcessHet=3.0103;FS=2.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=-1.242e+00;SOR=0.497;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4286,412,0
chr1	156219450	rs1804999	A	G	1345.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.51;ReadPosRankSum=0.949;SOR=3.202;VQSLOD=18.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:435,30,0
chr1	156220056	rs1043165	T	C	12096.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=147;ExcessHet=3.0103;FS=0.753;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=1.14;SOR=0.859;VQSLOD=6.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4798,441,0
chr1	156223056	rs75854315	G	A	131.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=0.484;SOR=0.941;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:140,0,112
chr1	156230002	rs2287026	G	A	339.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.712;SOR=0.693;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:174,15,0
chr1	156230141	rs2287025	T	A	1472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=28;ExcessHet=3.9794;FS=0.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=0.814;SOR=0.552;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:580,0,209
chr1	156230206	rs2287024	C	A	2066.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=2.19;SOR=0.739;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:720,0,486
chr1	156230429	rs12139321	A	G	2304.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=70;ExcessHet=3.9794;FS=2.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=1.06;SOR=0.921;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,42:70:99:1236,0,699
chr1	156230546	rs12142808	G	A	1070.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=31;ExcessHet=3.9794;FS=2.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=1.15;SOR=0.416;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,24:31:99:679,0,132
chr1	156230936	rs759329	A	G	898.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=6.184;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:473,33,0
chr1	156231266	rs759328	G	C	2832.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=113;ExcessHet=3.9794;FS=4.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.202;SOR=1.003;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,53:113:99:1560,0,1552
chr1	156233143	rs2273832	A	G	2637.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=82;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.571;SOR=0.693;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1112,0,1116
chr1	156233189	rs2273833	C	T	3086.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139e+00;DB;DP=110;ExcessHet=3.9794;FS=6.453;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-1.690e-01;SOR=0.410;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,52:110:99:1294,0,1659
chr1	156233479	rs4661036	T	C	3231.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=65;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-7.780e-01;SOR=0.673;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,34:65:99:865,0,839
chr1	156236592	rs370875877	CT	C	1155.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=38;ExcessHet=6.9897;FS=0.000;MQ=59.90;MQRankSum=0.00;QD=11.56;ReadPosRankSum=-3.480e-01;SOR=0.725;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,18:38:99:388,0,218
chr1	156236674	rs2758614	T	C	1381.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.50;SOR=7.276;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:371,30,0
chr1	156244559	rs12122180	G	A	746.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=31;ExcessHet=3.9794;FS=1.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=1.12;SOR=0.474;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,10:31:99:183,0,531
chr1	156246728	rs2277872	T	G	286.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=1.38;SOR=1.179;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,71
chr1	156246742	rs2277871	A	G	186.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.189;SOR=0.859;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:99,0,66
chr1	156247481	rs10908493	C	T	241.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.360e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.19;ReadPosRankSum=0.949;SOR=0.818;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:107,0,138
chr1	156247665	rs114416960	C	T	696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233e+00;DB;DP=69;ExcessHet=3.0103;FS=7.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-1.082e+00;SOR=0.216;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,29:69:99:705,0,1104
chr1	156248609	rs10752615	T	C	1498.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-6.430e-01;SOR=0.720;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:679,0,491
chr1	156252137	rs3806408	C	A	305.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=1.47;SOR=0.941;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:189,18,0
chr1	156252291	rs3806409	A	G	1137.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.914;SOR=0.743;VQSLOD=6.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,21:31:99:616,0,186
chr1	156255456	rs6684514	G	A	10920.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.75;DB;DP=461;ExcessHet=3.9794;FS=1.729;MQ=59.97;MQRankSum=-1.002e+00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=2.00;SOR=0.815;VQSLOD=1.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:245,216:461:99:5269,0,6028
chr1	156255833	rs2842883	G	C	3287.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.485;DB;DP=37;ExcessHet=3.0103;FS=3.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.25;ReadPosRankSum=1.30;SOR=1.714;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1389,111,0
chr1	156256000	rs6679145	T	C	386.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=1.60;SOR=0.446;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:134,0,292
chr1	156261491	rs3795728	G	C	6033.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DB;DP=116;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.609;SOR=0.731;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,59:116:99:1558,0,1611
chr1	156262653	rs6800	A	C	779.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=21;ExcessHet=3.9794;FS=6.100;MQ=59.82;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.811;SOR=2.613;VQSLOD=0.896;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:343,0,306
chr1	156263097	rs10908494	A	G	3168.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.26;DB;DP=104;ExcessHet=3.9794;FS=1.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=-1.060e+00;SOR=0.659;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,50:104:99:1587,0,1344
chr1	156263940	rs10908495	T	C	2095.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=72;ExcessHet=3.9794;FS=5.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.664;SOR=0.607;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1047,0,1007
chr1	156264000	rs10908496	G	A	3002.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050e-01;DB;DP=91;ExcessHet=3.9794;FS=1.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.126;SOR=0.566;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,55:91:99:1536,0,1057
chr1	156268330	rs7523827	C	G	459.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=6;ExcessHet=6.9897;FS=2.038;MQ=60.00;MQRankSum=0.00;QD=17.69;ReadPosRankSum=-1.593e+00;SOR=1.329;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:97:97,0,108
chr1	156269113	rs78320178	G	A	66.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:75,0,31
chr1	156279176	rs10908499	G	C	2336.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.470e-01;DB;DP=67;ExcessHet=3.9794;FS=4.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.399;SOR=0.433;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,39:67:99:1066,0,791
chr1	156279210	rs3001784	T	C	5337.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=3.372;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1592,126,0
chr1	156280671	rs10908500	A	T	1161.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.089e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=1.24;SOR=0.646;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:381,0,407
chr1	156281020	rs12132794	G	C	2846.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=76;ExcessHet=3.9794;FS=3.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-5.840e-01;SOR=0.998;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,54:76:99:1580,0,579
chr1	156287403	rs2296374	T	C	1958.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.204;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=-5.530e-01;SOR=0.693;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:639,59,0
chr1	156288906	.	G	GT	286.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.60;ReadPosRankSum=0.812;SOR=0.776;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:22:138,0,22
chr1	156290656	rs11548200	T	C	295.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DB;DP=53;ExcessHet=3.0103;FS=1.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.57;ReadPosRankSum=0.575;SOR=0.438;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,14:53:99:304,0,1035
chr1	156294585	rs148501476	A	AT	178.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.91;ReadPosRankSum=1.56;SOR=0.392;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:41:41,0,135
chr1	156304782	rs3762281	A	G	2284.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.56;ReadPosRankSum=0.668;SOR=0.675;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:841,75,0
chr1	156306918	rs11264475	G	A	1708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=60;ExcessHet=3.9794;FS=3.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.24;SOR=1.036;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,22:60:99:575,0,971
chr1	156308031	rs139949895	GGA	G	2599.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=65;ExcessHet=3.9794;FS=2.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-8.210e-01;SOR=0.443;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1178,0,1047
chr1	156309372	rs2296375	G	C	413.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=-2.720e-01;SOR=0.990;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,147
chr1	156314147	rs12022657	A	G	181.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:74,0,65
chr1	156314627	rs2274226	A	G	226.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=3.912;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	156339378	rs56027890	C	CT	570.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.818;SOR=0.339;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,21:42:99:579,0,593
chr1	156341063	rs2985713	G	C	345.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=3.056;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:137,12,0
chr1	156347007	.	A	G	965.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.717e+00;DP=65;ExcessHet=3.0103;FS=5.499;MQ=60.00;MQRankSum=0.00;QD=14.85;ReadPosRankSum=-9.570e-01;SOR=0.203;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,36:65:99:974,0,909
chr1	156347309	rs56353055	A	G	598.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.800e-02;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=0.665;SOR=0.669;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,20:63:99:607,0,1459
chr1	156351699	rs3748569	G	A	6014.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697e+00;DB;DP=163;ExcessHet=6.9897;FS=1.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.08;SOR=0.558;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,71:163:99:1627,0,2277
chr1	156351792	rs3748568	G	A	4654.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087e+00;DB;DP=122;ExcessHet=6.9897;FS=0.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-1.051e+00;SOR=0.650;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,57:122:99:1262,0,1823
chr1	156352870	rs4618959	G	A	81.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=-4.800e-01;SOR=0.283;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:90:90,0,221
chr1	156353970	rs6668419	A	G	432.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=2.35;SOR=0.507;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:441,0,560
chr1	156354293	rs6668731	A	G	1287.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.412;DB;DP=151;ExcessHet=3.0103;FS=0.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.52;ReadPosRankSum=1.49;SOR=0.775;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,59:151:99:1296,0,2213
chr1	156354347	rs11303415	TC	T	841.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DB;DP=124;ExcessHet=3.0103;FS=3.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=-2.780e-01;SOR=1.036;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:84,40:124:99:850,0,2160
chr1	156354367	rs6668857	A	G	3804.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=120;ExcessHet=6.9897;FS=7.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=8.000e-03;SOR=1.068;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,39:120:99:926,0,2015
chr1	156374256	rs3431	C	T	441.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=18;ExcessHet=3.9794;FS=3.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.845;SOR=0.197;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:269,0,220
chr1	156376680	rs6662064	A	G	1393.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=6.994;VQSLOD=24.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:350,24,0
chr1	156439000	rs1109751	T	C	630.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.17;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=1.26;SOR=0.512;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:305,0,204
chr1	156446242	rs2274316	C	A	1773.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.350e-01;DB;DP=67;ExcessHet=3.9794;FS=0.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-5.700e-02;SOR=0.632;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,28:67:99:592,0,962
chr1	156446450	rs12131289	C	T	820.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-3.420e-01;SOR=0.859;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:281,0,195
chr1	156446903	rs2274317	T	C	1121.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=58;ExcessHet=3.9794;FS=0.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.555;SOR=0.606;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,19:58:99:472,0,942
chr1	156447203	rs2274318	G	A	69.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.77;SOR=2.303;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	156450719	rs1185700	G	A	4411.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;DB;DP=148;ExcessHet=3.9794;FS=0.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-3.610e-01;SOR=0.656;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,82:148:99:2020,0,1589
chr1	156450740	rs1925950	G	A	3116.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=142;ExcessHet=3.9794;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.79;SOR=0.848;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,65:142:99:1558,0,1869
chr1	156450873	rs2274319	T	C	938.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=33;ExcessHet=3.9794;FS=1.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=1.46;SOR=1.012;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:471,0,637
chr1	156452093	rs1171558	G	A	201.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.00;SOR=0.141;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:75,0,29
chr1	156452783	rs1171559	A	T	1174.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.810e-01;DB;DP=14;ExcessHet=3.9794;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.70;ReadPosRankSum=0.317;SOR=1.646;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:537,42,0
chr1	156452870	rs2282286	G	A	1309.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.04;DB;DP=51;ExcessHet=3.9794;FS=2.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.805;SOR=1.309;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,16:51:99:459,0,1049
chr1	156453247	rs2274320	T	A	435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.756;SOR=1.179;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:186,0,254
chr1	156496188	rs6427315	A	G	5117.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=2.423;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1725,144,0
chr1	156498673	rs1171564	T	A	4903.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471e+00;DB;DP=140;ExcessHet=6.9897;FS=1.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.251;SOR=0.788;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,66:140:99:1615,0,1998
chr1	156499708	.	CA	C,CAAAAAAA	604.18	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.311;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.65;MQRankSum=0.00;QD=18.88;ReadPosRankSum=0.550;SOR=1.828;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,6,7:21:51:271,152,252,51,0,393
chr1	156499969	rs1171566	T	C	8409.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.98;DB;DP=269;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=1.04;SOR=0.723;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,124:269:99:3261,0,3519
chr1	156500128	rs746505	T	C	235.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.896e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=-2.343e+00;SOR=0.245;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:244,0,657
chr1	156502991	rs1609666	A	G	3660.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.683e+00;DB;DP=33;ExcessHet=3.9794;FS=7.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-5.170e-01;SOR=0.108;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:586,0,515
chr1	156503541	rs6699212	T	C	2835.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=3.198;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:992,78,0
chr1	156504104	rs7552082	A	C	1196.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=17;ExcessHet=6.9897;FS=2.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=-6.470e-01;SOR=1.032;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:378,0,238
chr1	156504728	rs728918	G	A	363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.885e+00;DB;DP=21;ExcessHet=3.0103;FS=10.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=1.24;SOR=2.453;VQSLOD=15.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:372,0,359
chr1	156505061	rs942965	C	T	657.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=60;ExcessHet=3.0103;FS=2.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-1.985e+00;SOR=1.255;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,23:60:99:666,0,997
chr1	156507025	rs34980426	C	T	1773.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DB;DP=201;ExcessHet=3.0103;FS=4.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=-1.664e+00;SOR=0.759;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,80:201:99:1782,0,2959
chr1	156508477	rs1177696	G	A	457.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-6.080e-01;SOR=0.569;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,197
chr1	156509552	rs1171570	C	G	6821.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.40;SOR=1.692;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2437,189,0
chr1	156510806	rs74327053	C	T	262.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-1.983e+00;SOR=1.302;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:271,0,422
chr1	156513556	rs1171576	G	T	58.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,74
chr1	156513579	rs60989774	C	CT	287.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=1.07;SOR=0.412;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:60:60,0,181
chr1	156518379	rs744224	G	A	5243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050e-01;DB;DP=123;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.046;SOR=0.690;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,57:123:99:1475,0,1643
chr1	156520173	rs1778819	T	A	5203.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.43;SOR=0.882;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1883,197,0
chr1	156524221	rs6694580	G	T	3802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610e-01;DB;DP=92;ExcessHet=6.9897;FS=8.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-6.560e-01;SOR=1.271;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,41:92:99:1227,0,1452
chr1	156524344	rs6686323	T	G	1562.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.11;SOR=7.328;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:386,30,0
chr1	156526234	rs2489139	C	T	5499.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=1.485;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1386,131,0
chr1	156526387	rs11264498	C	G	4233.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=120;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-6.640e-01;SOR=0.695;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,60:120:99:1318,0,1550
chr1	156526444	rs2488269	T	C	8411.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=1.145;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2989,287,0
chr1	156526564	rs2489138	C	A	966.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020e+00;DB;DP=20;ExcessHet=6.9897;FS=1.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-5.790e-01;SOR=1.112;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:289,0,346
chr1	156531474	rs1171544	A	G	2773.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=1.936;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:843,75,0
chr1	156531871	rs1171545	A	G	7369.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=1.918;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2095,189,0
chr1	156532207	rs1171546	T	C	702.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.28;SOR=5.892;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:149,12,0
chr1	156532250	rs1778828	T	C	2085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.89;SOR=6.229;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:36:1|1:156532250_T_C:532,36,0:156532250
chr1	156532252	rs1778827	C	T	2085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=6.316;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:156532250_T_C:532,36,0:156532250
chr1	156532344	rs7548309	T	G	2261.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DB;DP=49;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.882;SOR=0.742;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,23:49:99:552,0,701
chr1	156532733	rs4661183	T	C	711.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.480e-01;DB;DP=14;ExcessHet=6.9897;FS=1.147;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.730e-01;SOR=0.440;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:166,0,337
chr1	156532908	rs16837492	C	A	3347.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200e-02;DB;DP=117;ExcessHet=6.9897;FS=3.503;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=-1.500e-01;SOR=0.886;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,54:117:99:1281,0,1573
chr1	156532977	rs1171547	T	C	10619.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=1.038;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3424,323,0
chr1	156534525	rs4661184	A	C	785.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=18;ExcessHet=6.9897;FS=1.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-1.080e-01;SOR=1.209;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:344,0,202
chr1	156534539	rs4661185	G	A	479.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521e+00;DB;DP=13;ExcessHet=6.9897;FS=1.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-1.050e-01;SOR=1.270;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:171,0,221
chr1	156536123	rs2066378	T	C	2184.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.48;SOR=3.033;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:57:1|1:156536123_T_C:852,57,0:156536123
chr1	156536133	rs4382715	A	G	2516.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=3.990;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:156536123_T_C:1053,72,0:156536123
chr1	156536221	rs2066377	G	C	5350.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.03;SOR=2.188;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1978,186,0
chr1	156536251	rs947662	T	C	6918.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=1.668;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2240,204,0
chr1	156536353	rs947663	A	G	10006.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=33.47;SOR=0.813;VQSLOD=4.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2639,231,0
chr1	156536480	rs947664	T	C	4502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.93;SOR=2.000;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1146,102,0
chr1	156536567	rs947665	G	A	1518.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=7.428;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr1	156536653	rs1778824	C	T	420.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.81;SOR=4.804;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr1	156538973	rs1778825	A	G	528.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.18;SOR=4.047;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:110,9,0
chr1	156539019	rs11332475	CA	C	1117.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.26;SOR=3.664;VQSLOD=6.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:195,21,0
chr1	156539154	rs6427319	T	C	6264.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=1.818;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1719,168,0
chr1	156539320	.	C	CTT	274.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.31;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=-1.400e-01;SOR=0.723;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:17:99:115,0,154
chr1	156551848	rs6682716	A	G	3177.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=47;ExcessHet=1.5490;FS=0.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=0.608;SOR=0.530;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:678,0,803
chr1	156552720	rs6688600	T	G	1514.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.38;SOR=4.351;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:373,27,0
chr1	156553762	rs11264502	A	C	2037.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=4.450;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:834,60,0
chr1	156555200	rs10796960	G	A	914.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.68;SOR=2.400;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	156556321	rs10796961	G	A	13608.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=1.015;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5194,498,0
chr1	156556606	rs6699526	A	G	1746.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=7.523;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:664,48,0
chr1	156561414	rs6698493	T	C	2526.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.39;SOR=0.914;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:855,81,0
chr1	156561557	rs149629319	G	GGGGCCGGGCC	6676.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.98;SOR=2.087;VQSLOD=4.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:42:99:2157,146,0
chr1	156561651	rs7516274	G	C	12475.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=32.74;SOR=1.339;VQSLOD=4.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4047,372,0
chr1	156562008	rs1925949	G	A	9244.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=2.063;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2811,251,0
chr1	156562143	rs942959	G	A	3376.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=32.19;SOR=1.119;VQSLOD=4.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:695,63,0
chr1	156563375	rs6427321	G	A	10846.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=114;ExcessHet=3.0103;FS=3.340;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.07;ReadPosRankSum=-1.085e+00;SOR=0.474;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3583,341,0
chr1	156563726	rs6427322	A	C	9159.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=0.752;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2943,270,0
chr1	156563813	rs6668178	G	A	6440.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=31.11;SOR=1.371;VQSLOD=3.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1888,180,0
chr1	156563852	rs942963	C	T	4736.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=32.67;SOR=2.099;VQSLOD=5.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1372,132,0
chr1	156563898	rs1270	T	C	2333.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=3.370;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:556,39,0
chr1	156563992	rs1271	C	G	277.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=4.174;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	156564640	rs3795732	G	A	1614.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.33;ReadPosRankSum=-5.860e-01;SOR=1.085;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:493,39,0
chr1	156564922	rs3795733	C	T	14803.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=199;ExcessHet=3.0103;FS=0.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=-6.480e-01;SOR=0.790;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,197:199:99:6148,546,0
chr1	156565049	rs72559129	A	AAC	30993.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.86;SOR=0.762;VQSLOD=5.54;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,205:205:99:9273,625,0
chr1	156566366	rs138066315	G	C	469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.41;DB;DP=28;ExcessHet=3.0103;FS=6.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.715;SOR=2.973;VQSLOD=17.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:478,0,421
chr1	156567496	rs879461	C	T	3428.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.569;DB;DP=43;ExcessHet=3.0103;FS=3.569;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=0.822;SOR=1.073;VQSLOD=7.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1333,128,0
chr1	156594656	rs12567958	C	A	2104.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.244e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=0.435;SOR=0.625;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:631,54,0
chr1	156616442	rs113490499	ACCCTGGC	A,GCCCTGGC	663.17	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.180e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.87;ReadPosRankSum=-1.534e+00;SOR=1.460;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,3:10:99:416,124,105,294,0,285
chr1	156617968	rs2277873	G	A	3677.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=68;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=1.05;SOR=0.677;VQSLOD=6.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,44:68:99:1243,0,621
chr1	156618768	rs4661209	T	G	1039.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;DB;DP=19;ExcessHet=6.9897;FS=2.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=1.32;SOR=0.269;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:378,0,199
chr1	156622252	rs1056695	G	A	4541.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498e+00;DB;DP=108;ExcessHet=6.9897;FS=4.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.031;SOR=0.932;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,51:108:99:1327,0,1669
chr1	156626358	rs6700323	C	A	1286.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971e+00;DB;DP=25;ExcessHet=6.9897;FS=6.350;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.328;SOR=0.202;VQSLOD=6.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:405,0,375
chr1	156626920	rs7524611	T	C	28667.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=341;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=-4.400e-02;QD=30.24;ReadPosRankSum=0.019;SOR=1.242;VQSLOD=3.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,341:341:99:9992,1023,0
chr1	156628717	rs951964	C	A	1814.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.450e-01;DB;DP=64;ExcessHet=3.9794;FS=11.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-2.560e-01;SOR=0.797;VQSLOD=17.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:723,0,848
chr1	156629037	rs11360	A	G	1076.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-7.730e-01;SOR=0.653;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,25:63:99:555,0,845
chr1	156639753	rs11582300	G	A	22401.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=260;ExcessHet=3.0103;FS=1.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=-4.550e-01;SOR=0.510;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:135,125:260:99:3649,0,3688
chr1	156640156	rs3748570	G	A	21308.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925e+00;DB;DP=273;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=-2.210e-01;SOR=0.666;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,135:273:99:3415,0,3773
chr1	156640678	rs2886443	G	A	6692.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=93;ExcessHet=3.0103;FS=5.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=1.23;SOR=1.445;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,45:93:99:989,0,1124
chr1	156641537	rs951781	C	T	687.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=66;ExcessHet=3.0103;FS=3.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=-9.070e-01;SOR=1.232;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,27:66:99:696,0,975
chr1	156646668	rs4278369	A	G	19900.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.64;SOR=0.976;VQSLOD=18.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,245:245:99:7527,735,0
chr1	156670545	rs4661213	C	T	3500.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.22;SOR=1.046;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:932,72,0
chr1	156670983	rs7519545	T	C	2002.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.99;SOR=5.136;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:518,42,0
chr1	156693018	rs11579761	C	G	83.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.94;ReadPosRankSum=-1.456e+00;SOR=0.582;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:92:92,0,313
chr1	156696603	rs35890195	G	A	852.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-9.300e-01;SOR=0.903;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,31:62:99:861,0,837
chr1	156703456	rs10908518	G	C	1318.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=1.022;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:506,39,0
chr1	156705593	rs4311877	G	C	17103.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.43;SOR=0.700;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:5462,555,0
chr1	156706559	rs8658	A	C	2961.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.60;SOR=2.804;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:788,54,0
chr1	156707697	rs11581044	G	A	1575.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=-1.057e+00;SOR=0.734;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:999,75,0
chr1	156707775	rs6670122	T	G	7319.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.56;SOR=2.584;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2105,171,0
chr1	156708244	rs28697076	C	G	3251.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=298;ExcessHet=3.0103;FS=1.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.639;SOR=0.791;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:164,134:298:99:3260,0,4004
chr1	156713512	rs4437869	C	T	7897.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=0.709;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2592,244,0
chr1	156752048	rs2274503	C	G	5037.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.93;SOR=0.875;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1513,141,0
chr1	156752231	rs367770256	AT	A	1165.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.74;SOR=3.611;VQSLOD=4.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:286,24,0
chr1	156760887	rs11264554	C	A	4243.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.370e-01;DB;DP=56;ExcessHet=3.0103;FS=1.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=-9.000e-03;SOR=0.523;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1666,167,0
chr1	156784186	rs34887185	C	A	3809.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.123e+00;DB;DP=290;ExcessHet=3.0103;FS=3.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-1.215e+00;SOR=0.881;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,154:290:99:3818,0,3759
chr1	156784982	rs926103	T	C	4343.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.40;DB;DP=61;ExcessHet=3.0103;FS=2.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=1.85;SOR=0.406;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1908,183,0
chr1	156785356	rs2150906	T	C	2360.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=1.644;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:797,72,0
chr1	156785617	rs1800601	G	A	15228.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.750e-01;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=0.771;SOR=0.120;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,154:155:99:4925,428,0
chr1	156785762	rs11325907	AG	A	17160.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.828e+00;DB;DP=153;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=-1.186e+00;SOR=0.633;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,152:153:99:1|1:156785762_AG_A:6939,406,0:156785762
chr1	156785771	rs7546838	A	G	17384.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.222;DB;DP=160;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.35;ReadPosRankSum=-1.627e+00;SOR=0.610;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,159:160:99:1|1:156785762_AG_A:7292,430,0:156785762
chr1	156785779	rs1800600	G	A	18743.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.849e+00;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.98;ReadPosRankSum=-1.438e+00;SOR=0.290;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,158:159:99:1|1:156785762_AG_A:7032,421,0:156785762
chr1	156786574	rs12738727	T	A	2998.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.809e+00;DB;DP=143;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.97;ReadPosRankSum=-8.030e-01;SOR=0.664;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,78:143:99:0|1:156786574_T_A:3007,0,3857:156786574
chr1	156786575	rs12753240	C	A	2998.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720e+00;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=-5.790e-01;SOR=0.664;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,76:141:99:0|1:156786574_T_A:3007,0,3857:156786574
chr1	156815921	rs12064115	C	T	1248.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=111;ExcessHet=3.0103;FS=1.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.308;SOR=0.558;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,50:111:99:1257,0,1525
chr1	156816612	rs61813769	G	C	98.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.27;ReadPosRankSum=0.041;SOR=0.527;VQSLOD=22.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,4:23:99:107,0,673
chr1	156818647	rs11590051	T	C	2634.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324e+00;DB;DP=205;ExcessHet=3.0103;FS=5.959;MQ=59.95;MQRankSum=-1.377e+00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.111;SOR=0.417;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:100,105:205:99:2643,0,2712
chr1	156823952	rs199848379	T	A	1510.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=118;ExcessHet=3.0103;FS=0.710;MQ=60.00;MQRankSum=0.00;QD=12.80;ReadPosRankSum=-1.235e+00;SOR=0.791;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,54:118:99:1519,0,1809
chr1	156828454	rs12129392	C	A	1377.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=103;ExcessHet=3.0103;FS=0.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=1.70;SOR=0.563;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,52:103:99:1386,0,1261
chr1	156831060	rs140662359	ACGCAGCCTTCGGCGCTGCCCGGGCGTTCCTC	A	257.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=17;ExcessHet=3.0103;FS=3.140;MQ=60.00;MQRankSum=0.00;QD=15.13;ReadPosRankSum=-6.840e-01;SOR=2.093;VQSLOD=5.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:266,0,2761
chr1	156834269	rs1800878	G	T	628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.738e+00;DB;DP=48;ExcessHet=3.0103;FS=2.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.785;SOR=0.384;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,25:48:99:637,0,735
chr1	156836838	rs2274497	T	C	537.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.644e+00;DB;DP=41;ExcessHet=3.0103;FS=4.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-1.151e+00;SOR=0.139;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:546,0,736
chr1	156838141	rs1800879	T	C	1306.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.12;ReadPosRankSum=-1.021e+00;SOR=0.826;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:361,0,150
chr1	156838808	.	CTCCCTTCCTTCCTTCCT	C	60.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.09;SOR=0.693;VQSLOD=4.33;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
chr1	156841259	rs2644614	A	C	2028.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=31.15;SOR=5.018;VQSLOD=6.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:334,24,0
chr1	156844979	rs151240002	A	C	210.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=1.25;SOR=0.495;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:219,0,334
chr1	156845492	.	AGT	AGTGTGT,A	4047.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.480;DP=38;ExcessHet=3.0103;FS=7.712;MQ=59.97;MQRankSum=0.00;QD=33.17;ReadPosRankSum=-1.700e-01;SOR=3.210;VQSLOD=3.38;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,18,15:38:99:1117,451,567,722,0,810
chr1	156848794	rs2768756	C	T	408.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=-3.280e-01;SOR=1.609;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:101,0,31
chr1	156848808	rs2768757	T	C	499.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=0.598;SOR=1.402;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,101
chr1	156848909	rs1799770	CA	C	548.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=30;ExcessHet=3.0103;FS=1.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-3.290e-01;SOR=0.412;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,16:30:99:557,0,470
chr1	156848995	rs6337	C	T	7574.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=92;ExcessHet=3.9794;FS=2.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=-3.500e-02;SOR=0.882;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,48:92:99:1293,0,1217
chr1	156850104	rs2274499	G	C	883.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=4.615;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:156850104_G_C:495,33,0:156850104
chr1	156850112	rs2274500	T	G	883.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=4.514;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:156850104_G_C:495,33,0:156850104
chr1	156851041	rs2768758	T	G	1357.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=3.611;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:305,21,0
chr1	156873697	.	G	A	1258.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262e+00;DP=127;ExcessHet=3.0103;FS=7.549;MQ=60.00;MQRankSum=0.00;QD=9.91;ReadPosRankSum=1.11;SOR=0.286;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,56:127:99:1267,0,1883
chr1	156875092	rs4661074	G	A	5879.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150e-01;DB;DP=65;ExcessHet=3.9794;FS=1.847;MQ=60.00;MQRankSum=0.00;QD=27.74;ReadPosRankSum=3.62;SOR=0.553;VQSLOD=19.89;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,65:65:99:1|1:156875092_G_A:2925,196,0:156875092
chr1	156875097	rs4661075	G	A	6132.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=66;ExcessHet=3.9794;FS=3.346;MQ=60.00;MQRankSum=0.00;QD=28.26;ReadPosRankSum=3.99;SOR=0.500;VQSLOD=19.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,66:66:99:1|1:156875092_G_A:3036,205,0:156875092
chr1	156875107	rs2644590	C	A	6276.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.119e+00;DB;DP=73;ExcessHet=3.9794;FS=3.996;MQ=60.00;MQRankSum=0.00;QD=26.71;ReadPosRankSum=4.23;SOR=0.467;VQSLOD=19.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,73:73:99:1|1:156875092_G_A:3204,220,0:156875092
chr1	156875377	rs2644591	G	C	1727.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.683e+00;DB;DP=16;ExcessHet=3.0103;FS=1.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=-2.158e+00;SOR=0.314;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:561,48,0
chr1	156875764	rs2644592	G	A	336.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.00;SOR=0.627;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:181,18,0
chr1	156875985	rs2644593	G	A	6401.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=1.696;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2023,193,0
chr1	156877457	rs1952294	T	C	16655.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.27;SOR=1.278;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,168:168:99:5670,504,0
chr1	156882996	rs822441	G	C	16296.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=412;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=-1.341e+00;SOR=0.662;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:221,191:412:99:4727,0,5352
chr1	156883215	rs822442	C	A	2884.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377e+00;DB;DP=248;ExcessHet=3.0103;FS=0.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-2.880e-01;SOR=0.740;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:131,117:248:99:2893,0,3436
chr1	156884103	rs703156	T	A	93.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-5.240e-01;SOR=0.223;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:102,0,67
chr1	156884365	rs749256	T	C	6950.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=64;ExcessHet=3.0103;FS=9.831;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.70;ReadPosRankSum=-7.290e-01;SOR=0.179;VQSLOD=4.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2324,192,0
chr1	156884584	rs56260937	C	T	1738.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DB;DP=162;ExcessHet=3.0103;FS=1.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=1.52;SOR=0.857;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,70:162:99:1747,0,2316
chr1	156890672	rs41273221	T	C	1198.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.47;DB;DP=69;ExcessHet=3.0103;FS=12.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=1.83;SOR=2.193;VQSLOD=14.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,39:69:99:1207,0,600
chr1	156894006	rs822438	C	G	2246.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.81;DB;DP=31;ExcessHet=3.9794;FS=1.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=1.31;SOR=0.915;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:468,0,426
chr1	156894613	rs12117221	G	T	1173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.618e+00;DB;DP=68;ExcessHet=3.0103;FS=13.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-1.500e-01;SOR=0.106;VQSLOD=14.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,40:68:99:1182,0,894
chr1	156894825	rs72698699	C	T	972.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DB;DP=74;ExcessHet=3.0103;FS=4.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.390;SOR=1.383;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,35:74:99:981,0,1016
chr1	156897967	rs866068	G	C	520.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.614e+00;DB;DP=31;ExcessHet=3.0103;FS=1.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.751;SOR=0.352;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:529,0,343
chr1	156898155	rs199986096	CTCTTCT	CTCTTCTTCTTCTTCTTCTTCT,C	984.94	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.50;QD=27.17;SOR=1.445;VQSLOD=4.74;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,5,16:21:99:794,596,578,194,0,219
chr1	156899288	rs11264584	G	A	578.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307e+00;DB;DP=41;ExcessHet=3.0103;FS=6.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-5.350e-01;SOR=1.296;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:587,0,701
chr1	156899592	rs822427	A	G	166.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540e-01;DB;DP=12;ExcessHet=3.0103;FS=6.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.312;SOR=3.180;VQSLOD=15.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:175,0,197
chr1	156899682	rs12122442	G	A	57.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-8.420e-01;SOR=0.446;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,111
chr1	156901888	rs822429	T	C	545.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=24;ExcessHet=3.0103;FS=2.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=0.429;SOR=0.269;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:554,0,268
chr1	156902222	rs12119908	G	A	242.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-1.430e-01;SOR=0.760;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:251,0,312
chr1	156902259	rs822430	G	A	3437.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.01;DB;DP=49;ExcessHet=3.9794;FS=0.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=1.02;SOR=0.794;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,21:49:99:611,0,646
chr1	156902281	rs822431	T	G	867.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=66;ExcessHet=3.0103;FS=3.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-1.059e+00;SOR=1.411;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,33:66:99:876,0,813
chr1	156902574	rs11415803	A	AT	325.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040e+00;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=0.073;SOR=0.473;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,17:38:99:334,0,469
chr1	156906881	rs2275198	G	A	440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e+00;DB;DP=37;ExcessHet=3.0103;FS=1.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-1.027e+00;SOR=0.877;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:449,0,625
chr1	156906910	rs868187	C	T	567.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-1.698e+00;SOR=0.551;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:576,0,635
chr1	156907031	rs4570419	C	T	871.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DB;DP=96;ExcessHet=3.0103;FS=1.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-3.000e-02;SOR=0.512;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,38:96:99:880,0,1450
chr1	156907081	rs945508	T	C	4947.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=93;ExcessHet=3.9794;FS=1.343;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.459;SOR=0.779;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,34:93:99:731,0,1440
chr1	156907550	rs3765790	C	A	70.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=2.303;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	156909303	rs3818807	T	A	748.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.490e-01;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-3.340e-01;SOR=0.634;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,33:60:99:757,0,624
chr1	156909695	rs2275199	G	A	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=44;ExcessHet=3.0103;FS=1.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=0.353;SOR=0.454;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,14:44:99:354,0,852
chr1	156911379	rs2275200	A	G	416.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DB;DP=31;ExcessHet=3.0103;FS=6.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-3.810e-01;SOR=0.117;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:425,0,623
chr1	156914070	rs16837807	C	A	855.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=-2.380e-01;SOR=0.721;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:864,0,685
chr1	156914240	rs112088642	CCATTCATT	C	4725.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-02;DB;DP=46;ExcessHet=3.9794;FS=4.181;MQ=60.00;MQRankSum=0.00;QD=28.99;ReadPosRankSum=1.09;SOR=0.401;VQSLOD=5.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,24:46:99:944,0,1852
chr1	156915038	rs2275201	C	T	324.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807e+00;DB;DP=32;ExcessHet=3.0103;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=0.646;SOR=1.284;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:333,0,543
chr1	156916640	rs111988963	G	GCCTATCCCTT	656.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-2.813e+00;SOR=0.538;VQSLOD=5.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:30,18:48:99:665,0,3447
chr1	156925435	rs2275204	T	C	1436.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125e+00;DB;DP=88;ExcessHet=3.0103;FS=0.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=1.81;SOR=0.551;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,54:88:99:1445,0,848
chr1	156927751	rs12132684	T	C	144.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=0.700;SOR=1.508;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:153,0,100
chr1	156928776	rs1572409	A	T	1087.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961e+00;DB;DP=96;ExcessHet=3.0103;FS=3.875;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-5.320e-01;SOR=0.379;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,46:96:99:1096,0,1406
chr1	156930053	rs56372341	C	T	119.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.010;SOR=0.527;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:128,0,182
chr1	156939067	rs2275206	G	A	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.270e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-9.100e-01;SOR=0.720;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:341,0,546
chr1	156939175	rs1336149	C	T	2422.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.210e-01;DB;DP=54;ExcessHet=3.9794;FS=2.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-6.670e-01;SOR=0.786;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:529,0,667
chr1	156941412	rs12136088	T	G	2374.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.109e+00;DB;DP=204;ExcessHet=3.0103;FS=1.110;MQ=59.94;MQRankSum=-1.000e+00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-2.701e+00;SOR=0.587;VQSLOD=1.66;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:103,101:204:99:2383,0,2745
chr1	156946898	rs1006168	T	G	1196.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=89;ExcessHet=3.0103;FS=1.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.48;SOR=0.468;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,47:89:99:1205,0,909
chr1	156947928	rs16837897	T	C	1950.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=142;ExcessHet=3.0103;FS=0.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.577;SOR=0.644;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,71:142:99:1959,0,1698
chr1	156947953	rs12141806	A	T	1862.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=126;ExcessHet=3.0103;FS=2.234;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=1.08;SOR=0.582;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,65:126:99:1871,0,1516
chr1	156948880	rs1007604	C	A	238.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=19;ExcessHet=3.0103;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=1.61;SOR=0.105;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:247,0,369
chr1	156949153	rs36031299	C	CT	502.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.67;MQRankSum=0.00;QD=13.57;ReadPosRankSum=0.316;SOR=0.572;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:64:64,0,76
chr1	156954267	rs6427339	C	T	2824.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.820e-01;DB;DP=117;ExcessHet=3.9794;FS=3.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.900;SOR=0.940;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,60:117:99:1504,0,1508
chr1	156954384	rs6427340	T	C	703.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.591e+00;DB;DP=21;ExcessHet=3.9794;FS=3.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-7.470e-01;SOR=0.121;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:274,0,427
chr1	156954433	rs7541702	T	C	43.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.41;ReadPosRankSum=1.61;SOR=0.169;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:52:52,0,221
chr1	157043491	rs11264609	A	G	3162.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.720e-01;DB;DP=62;ExcessHet=1.5490;FS=1.571;MQ=59.87;MQRankSum=-1.184e+00;POSITIVE_TRAIN_SITE;QD=23.43;ReadPosRankSum=-1.572e+00;SOR=0.925;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,25:62:99:635,0,1028
chr1	157062739	rs12136960	C	G	2443.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=1.678;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2460,207,0
chr1	157063171	rs1177849	G	A	78.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.04;SOR=1.179;VQSLOD=19.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr1	157069154	rs16838075	A	G	1000.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=69;ExcessHet=3.0103;FS=3.243;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-1.990e-01;SOR=1.106;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,37:69:99:1009,0,729
chr1	157105790	rs3737269	T	C	63.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:72,0,31
chr1	157485561	rs3811035	G	A	4416.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=40;ExcessHet=3.0103;FS=0.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=3.50;SOR=0.844;VQSLOD=21.76;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,14:40:99:451,0,839
chr1	157485720	rs1002967	T	C	1878.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=4.615;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:437,39,0
chr1	157489307	rs3811033	G	A	61.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,115
chr1	157490710	rs6696309	G	A	1225.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=3.0103;FS=10.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.05;ReadPosRankSum=1.29;SOR=6.244;VQSLOD=12.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:171,0,100
chr1	157491173	rs6427383	T	A	4808.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=1.706;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1333,114,0
chr1	157491322	rs6696922	G	A	491.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=5.283;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr1	157497263	rs3761961	T	C	4997.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=2.902;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1441,129,0
chr1	157508801	rs1972239	C	T	1666.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=6.091;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:450,36,0
chr1	157508882	rs6427384	C	T	3503.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.09;SOR=3.477;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1353,117,0
chr1	157509025	rs2012199	C	T	11281.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=0.737;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3890,387,0
chr1	157514091	rs12036228	C	T	564.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-1.049e+00;SOR=0.806;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,24:61:99:0|1:157514091_C_T:573,0,957:157514091
chr1	157514097	rs6679793	A	G	6065.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=60;ExcessHet=3.0103;FS=3.262;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.73;ReadPosRankSum=0.663;SOR=0.376;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,60:60:99:1|1:157514091_C_T:2220,183,0:157514091
chr1	157517127	rs7531685	C	T	638.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413e+00;DB;DP=71;ExcessHet=3.0103;FS=3.195;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-1.263e+00;SOR=0.732;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,33:71:99:647,0,1000
chr1	157522016	rs7552348	G	A	123.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-9.100e-02;SOR=0.330;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,267
chr1	157545231	rs849827	G	T	131.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=-4.310e-01;SOR=1.329;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:28:140,0,28
chr1	157548669	rs1885561	T	A	204.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.039e+00;DB;DP=22;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=0.264;SOR=0.138;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:213,0,424
chr1	157550066	rs10489673	T	C	5693.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=115;ExcessHet=3.9794;FS=1.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-7.400e-01;SOR=0.628;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,53:115:99:1097,0,1462
chr1	157557701	rs2777962	G	A	3891.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=37;ExcessHet=3.0103;FS=0.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=0.725;SOR=0.604;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1105,110,0
chr1	157559122	rs11582663	C	T	1351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895e+00;DB;DP=116;ExcessHet=3.0103;FS=1.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.298;SOR=0.773;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,60:116:99:1360,0,1399
chr1	157565970	rs1885560	A	G	369.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=0.00;SOR=1.244;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr1	157567365	rs2758672	T	G	74.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:80,0,33
chr1	157567751	rs1361889	A	G	3218.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=39;ExcessHet=3.0103;FS=0.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=0.079;SOR=0.889;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1198,117,0
chr1	157648371	rs2282283	T	G	31.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:40,0,35
chr1	157651032	rs7546300	T	A	177.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.125;SOR=1.402;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:186,0,233
chr1	157651104	rs7546376	T	C	67.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.91;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:76,0,68
chr1	157668390	rs7522061	T	C	2353.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.120e-01;DB;DP=78;ExcessHet=3.9794;FS=1.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-3.550e-01;SOR=0.823;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,36:78:99:977,0,1120
chr1	157668427	rs12140725	G	A	699.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=53;ExcessHet=3.0103;FS=9.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-8.400e-01;SOR=2.595;VQSLOD=16.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:708,0,873
chr1	157669668	rs10489678	G	A	162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-02;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=0.412;SOR=0.446;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:171,0,248
chr1	157670290	rs945635	C	G	1528.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;DB;DP=81;ExcessHet=3.9794;FS=2.131;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=1.21;SOR=0.523;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,42:81:99:943,0,820
chr1	157718283	rs6696643	A	T	4870.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.48;ReadPosRankSum=-7.450e-01;SOR=0.789;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:477,0,555
chr1	157737504	rs2873413	G	A	93.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:102,0,69
chr1	157740186	rs10540465	GTC	G	1127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-01;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=-5.450e-01;SOR=0.683;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,29:53:99:0|1:157740186_GTC_G:1136,0,1485:157740186
chr1	157740189	rs57139984	A	G	1127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DB;DP=55;ExcessHet=3.0103;FS=1.096;MQ=60.00;MQRankSum=0.00;QD=20.50;ReadPosRankSum=0.051;SOR=0.446;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,29:55:99:0|1:157740186_GTC_G:1136,0,1485:157740186
chr1	157744142	rs6700883	A	T	524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.970e-01;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=1.02;SOR=0.752;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:533,0,714
chr1	157768000	rs3811024	G	C	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=-2.240e-01;SOR=0.534;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,10:32:99:237,0,598
chr1	157771880	rs4971154	C	T	16896.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=162;ExcessHet=3.0103;FS=2.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=0.392;SOR=0.475;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,82:162:99:2105,0,2049
chr1	157802714	rs2765499	T	A	624.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.969e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=-7.550e-01;SOR=1.143;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,104
chr1	157802748	rs2777815	C	G	946.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=13;ExcessHet=6.9897;FS=3.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.50;ReadPosRankSum=0.141;SOR=2.139;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:169,0,245
chr1	157802877	rs2765500	T	C	3188.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125e+00;DB;DP=71;ExcessHet=6.9897;FS=1.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-6.900e-01;SOR=0.806;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,31:71:99:740,0,1041
chr1	157802979	rs2261295	C	T	7703.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.871e+00;DB;DP=115;ExcessHet=3.9794;FS=0.549;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=0.775;SOR=0.777;VQSLOD=6.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,49:115:99:1197,0,1781
chr1	157804648	rs2765501	G	A	1311.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.121e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.541;SOR=0.990;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:31:99:620,0,458
chr1	157806006	rs2765503	G	A	15074.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135e+00;DB;DP=189;ExcessHet=3.9794;FS=0.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.654;SOR=0.762;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,111:189:99:2725,0,1846
chr1	157811392	rs2260040	G	A	2208.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=27;ExcessHet=3.9794;FS=5.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=-1.950e-01;SOR=0.257;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:452,0,339
chr1	157963314	.	T	TGC	1122.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.10;ReadPosRankSum=-6.860e-01;SOR=0.899;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,34:62:99:1131,0,880
chr1	158045655	rs11264899	A	G	822.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.37;ReadPosRankSum=0.674;SOR=1.112;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,250
chr1	158045749	rs11264900	A	G	2353.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.250e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=0.805;SOR=0.606;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:282,0,594
chr1	158045764	rs7365258	G	A	622.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DB;DP=33;ExcessHet=3.0103;FS=1.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=-1.733e+00;SOR=1.358;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:631,0,317
chr1	158047601	rs11264901	A	G	2127.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=10.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.25;ReadPosRankSum=-9.920e-01;SOR=3.877;VQSLOD=12.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:73:73,0,176
chr1	158048152	rs34648101	C	T	517.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.51;ReadPosRankSum=0.212;SOR=0.631;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,15:22:99:526,0,234
chr1	158054379	rs927662	A	G	1644.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.924e+00;DB;DP=129;ExcessHet=3.0103;FS=0.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.106;SOR=0.566;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,63:129:99:1653,0,1842
chr1	158056549	rs41273463	G	C	932.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119e+00;DB;DP=52;ExcessHet=3.0103;FS=5.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=2.24;SOR=1.748;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,32:52:99:941,0,475
chr1	158056651	rs7364493	A	G	1359.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=6.994;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:462,33,0
chr1	158057420	rs7514301	A	T	2536.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DB;DP=36;ExcessHet=3.9794;FS=4.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=0.301;SOR=1.242;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,13:36:99:347,0,612
chr1	158058109	rs6427419	C	A	6259.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DB;DP=95;ExcessHet=3.9794;FS=3.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=3.06;SOR=0.902;VQSLOD=22.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1185,0,1098
chr1	158058266	.	CTTTT	C,CTT	1252.13	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.030e-01;DP=16;ExcessHet=3.0103;FS=27.495;MQ=58.35;MQRankSum=-7.400e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=0.609;SOR=3.166;VQSLOD=-2.650e-02;culprit=FS	GT:AD:DP:GQ:PL	1/2:4,4,6:16:51:258,56,264,51,0,99
chr1	158059929	rs10908618	T	C	1264.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=2.235;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:193,15,0
chr1	158066834	rs6427420	A	G	7627.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=126;ExcessHet=3.9794;FS=11.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=0.632;SOR=0.358;VQSLOD=18.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,76:126:99:1937,0,1154
chr1	158067047	rs874844	A	C	1562.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.69;DB;DP=13;ExcessHet=3.9794;FS=2.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.49;ReadPosRankSum=1.91;SOR=1.680;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,12:13:2:341,0,2
chr1	158067060	rs11339854	TG	T	1211.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=0.340;SOR=0.665;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:327,30,0
chr1	158151218	rs859013	A	G	729.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932e+00;DB;DP=50;ExcessHet=3.0103;FS=1.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-2.026e+00;SOR=0.927;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,27:50:99:738,0,640
chr1	158153996	rs426336	T	C	9495.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.34;SOR=2.676;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2763,230,0
chr1	158224575	rs71084271	CTGTGTGTGTGTGTGTGTG	C,CTGTGTGTGTGTGTG	3326.27	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.34;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=3.70;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.88;ReadPosRankSum=1.45;SOR=1.448;VQSLOD=0.825;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,15,3:38:99:969,327,869,648,0,604
chr1	158224579	rs74762105	G	*,C	268.19	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=59.92;NEGATIVE_TRAIN_SITE;QD=3.67;SOR=1.467;VQSLOD=-8.137e-01;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,31,8:39:85:1573,208,85,1173,0,1229
chr1	158224595	.	G	C	313.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;DP=56;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=-1.162e+00;QD=6.52;ReadPosRankSum=0.457;SOR=0.722;VQSLOD=0.034;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,15:56:99:599,0,1206
chr1	158224825	rs411089	C	T	3113.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=1.274;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3130,290,0
chr1	158224904	rs2269714	C	T	1609.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=125;ExcessHet=3.0103;FS=3.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-1.338e+00;SOR=0.994;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,59:125:99:1618,0,1724
chr1	158225019	rs2269715	C	G	1872.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DB;DP=175;ExcessHet=3.0103;FS=7.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.746;SOR=0.919;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,75:175:99:1881,0,2641
chr1	158225243	rs2269716	A	T	382.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=-1.457e+00;SOR=0.632;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,15:45:99:391,0,807
chr1	158225396	rs440419	G	T	145.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.40;SOR=1.609;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr1	158226667	rs1042388	C	T	2617.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=190;ExcessHet=3.0103;FS=1.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.329;SOR=0.837;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,100:190:99:2626,0,2123
chr1	158263123	rs115515212	C	T	1560.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680e+00;DB;DP=126;ExcessHet=3.0103;FS=1.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-7.190e-01;SOR=0.878;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,59:126:99:1569,0,1873
chr1	158297960	rs16840096	C	T	943.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.860e-01;DB;DP=99;ExcessHet=3.0103;FS=0.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=2.59;SOR=0.610;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,45:99:99:952,0,1297
chr1	158299840	rs35841099	C	T	708.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DB;DP=52;ExcessHet=3.0103;FS=4.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.440;SOR=0.275;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:717,0,723
chr1	158300306	rs962879	G	C	513.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672e+00;DB;DP=32;ExcessHet=3.0103;FS=1.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=0.701;SOR=0.294;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,20:32:99:522,0,332
chr1	158322961	rs858565	T	C	521.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=5.283;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
chr1	158323863	rs71632610	C	T	927.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065e+00;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-1.281e+00;SOR=0.586;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,35:70:99:936,0,990
chr1	158324425	rs1065457	A	G	3496.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.060e-01;DB;DP=70;ExcessHet=1.5490;FS=8.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=-2.954e+00;SOR=1.281;VQSLOD=20.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2213,209,0
chr1	158326447	rs35184522	C	CT	882.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=52;ExcessHet=3.9794;FS=4.591;MQ=60.00;MQRankSum=0.00;QD=7.60;ReadPosRankSum=1.47;SOR=0.964;VQSLOD=5.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,17:52:99:293,0,806
chr1	158368309	rs10489826	T	G	679.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=1.18;SOR=0.779;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,22:38:99:688,0,409
chr1	158368541	rs34465440	A	G	6065.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.17;DB;DP=116;ExcessHet=1.5490;FS=3.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=4.000e-03;SOR=0.910;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3844,348,0
chr1	158368846	rs6662382	T	C	2865.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=64;ExcessHet=1.5490;FS=2.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=-3.760e-01;SOR=0.864;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2019,191,0
chr1	158368964	rs61818749	C	T	1437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.330e-01;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=-5.610e-01;SOR=0.681;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,39:76:99:0|1:158368964_C_T:1446,0,1897:158368964
chr1	158368974	rs61818750	A	G	1405.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=0.313;SOR=0.648;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,37:75:99:0|1:158368964_C_T:1414,0,1960:158368964
chr1	158369064	rs41488350	A	G	938.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DB;DP=79;ExcessHet=3.0103;FS=4.319;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.981;SOR=1.122;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,40:79:99:947,0,933
chr1	158369319	rs6696357	C	A	397.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.072;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=0.108;SOR=0.892;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr1	158389209	.	A	AG	710.14	PASS	AC=2;AF=1.00;AN=2;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.10;SOR=2.419;VQSLOD=5.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:727,57,0
chr1	158389630	rs57525598	G	C	584.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=2.179;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:601,51,0
chr1	158389659	rs58605957	T	C	729.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.14;SOR=1.609;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:746,66,0
chr1	158390252	rs12239443	T	G	4393.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.78;SOR=0.723;VQSLOD=18.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4410,402,0
chr1	158390501	rs34616883	G	A	4296.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.660e-01;DB;DP=139;ExcessHet=0.4576;FS=3.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=1.62;SOR=0.316;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,138:139:99:4313,376,0
chr1	158390834	rs10489830	C	A	974.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=1.536;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:991,90,0
chr1	158435250	rs1002599	C	T	2752.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=83;ExcessHet=0.4576;FS=0.000;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=-1.023e+00;SOR=0.941;VQSLOD=6.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,82:83:99:2769,238,0
chr1	158435278	rs1573519	G	A	2941.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=95;ExcessHet=0.4576;FS=0.000;MQ=59.89;MQRankSum=-7.300e-02;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=1.36;SOR=1.584;VQSLOD=0.394;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,93:95:99:2958,235,0
chr1	158436299	rs4657080	T	C	3146.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=1.686;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3163,281,0
chr1	158436354	rs67123344	AT	A	1205.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=2.948;VQSLOD=5.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1222,120,0
chr1	158450238	rs3820678	G	A	1483.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=128;ExcessHet=3.0103;FS=1.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.070;SOR=0.846;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,57:128:99:1492,0,1904
chr1	158450314	rs6679056	A	G	1515.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=121;ExcessHet=3.0103;FS=5.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-9.610e-01;SOR=0.353;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,55:121:99:1524,0,1790
chr1	158450382	rs1418843	C	T	1283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.160e-01;DB;DP=99;ExcessHet=3.0103;FS=0.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.16;SOR=0.803;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,44:99:99:1292,0,1671
chr1	158507157	rs2051665	A	T	1151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.250e-01;DB;DP=72;ExcessHet=3.0103;FS=1.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-1.326e+00;SOR=0.489;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,32:72:99:0|1:158507157_A_T:1160,0,1918:158507157
chr1	158507160	rs2051666	T	G	1172.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=73;ExcessHet=3.0103;FS=2.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-1.369e+00;SOR=0.437;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,33:73:99:0|1:158507157_A_T:1181,0,1915:158507157
chr1	158507184	rs2051068	A	G	886.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970e-01;DB;DP=86;ExcessHet=3.0103;FS=0.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.325;SOR=0.575;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,39:86:99:895,0,1191
chr1	158507222	rs5778082	GA	G	1007.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DB;DP=89;ExcessHet=3.0103;FS=0.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=1.12;SOR=0.856;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,42:89:99:1016,0,1162
chr1	158507398	rs2051067	G	T	208.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=1.78;SOR=0.784;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:217,0,365
chr1	158532405	rs7526514	T	G	264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=0.281;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:273,0,163
chr1	158533140	rs12080815	A	G	1359.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=91;ExcessHet=3.0103;FS=2.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=-3.030e-01;SOR=1.094;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,50:91:99:1368,0,1112
chr1	158533224	rs12081915	A	G	779.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;DB;DP=68;ExcessHet=3.0103;FS=0.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-4.740e-01;SOR=0.856;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,31:68:99:788,0,942
chr1	158549264	rs863360	G	A	899.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DB;DP=66;ExcessHet=3.0103;FS=1.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-1.163e+00;SOR=0.593;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,35:66:99:908,0,715
chr1	158549420	rs863361	C	T	899.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.610;SOR=0.631;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,33:65:99:908,0,880
chr1	158549492	rs863362	C	T	795.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DB;DP=75;ExcessHet=3.0103;FS=3.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-3.630e-01;SOR=0.960;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,33:75:99:804,0,1048
chr1	158549511	rs863363	A	G	834.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-4.540e-01;SOR=0.660;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,33:75:99:843,0,1044
chr1	158577109	rs857685	A	C	1187.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DB;DP=94;ExcessHet=3.0103;FS=1.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.023;SOR=0.466;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,47:94:99:1196,0,1246
chr1	158580921	rs66981873	GCA	G	2204.30	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.031e+00;DB;DP=21;ExcessHet=3.0103;FS=1.082;MQ=59.77;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=0.881;SOR=1.019;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:21:63:604,63,0
chr1	158582426	rs2518489	G	A	209.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-1.163e+00;SOR=0.275;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:218,0,480
chr1	158582543	rs2251963	G	A	932.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641e+00;DB;DP=69;ExcessHet=3.0103;FS=0.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-7.870e-01;SOR=0.892;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,26:69:99:0|1:158582543_G_A:941,0,2698:158582543
chr1	158582552	rs2251964	G	A	1032.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672e+00;DB;DP=76;ExcessHet=3.0103;FS=2.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-9.360e-01;SOR=1.051;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,30:76:99:0|1:158582543_G_A:1041,0,2746:158582543
chr1	158582646	rs2251969	T	C	3390.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138e+00;DB;DP=95;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.499;SOR=0.678;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1032,0,1304
chr1	158582838	rs2157691	G	C	114.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=0.457;SOR=0.160;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:123,0,417
chr1	158584091	rs952094	A	G	2393.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=36;ExcessHet=6.9897;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-1.060e-01;SOR=0.762;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,10:36:99:0|1:158584091_A_G:330,0,1336:158584091
chr1	158584103	rs373704896	G	GAA	2314.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741e+00;DB;DP=31;ExcessHet=6.9897;FS=1.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=-1.660e-01;SOR=0.856;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,9:31:99:0|1:158584091_A_G:266,0,1263:158584091
chr1	158585230	rs2518491	C	T	1017.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537e+00;DB;DP=81;ExcessHet=3.0103;FS=1.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.38;SOR=0.954;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1026,0,1067
chr1	158585355	rs2852634	T	C	163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=0.655;SOR=0.260;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:172,0,370
chr1	158587143	rs2022002	C	T	126.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;DB;DP=7;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=-6.520e-01;SOR=2.494;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:72:134,0,72
chr1	158587390	rs857716	C	T	3083.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DB;DP=66;ExcessHet=6.9897;FS=2.207;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.084;SOR=0.565;VQSLOD=6.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,40:66:99:1169,0,670
chr1	158587784	rs857717	T	G	2324.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.19;SOR=1.263;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:838,69,0
chr1	158592516	rs1619	T	C	225.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-7.120e-01;SOR=2.584;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:14:156,0,14
chr1	158596438	rs2482963	G	T	94.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.91;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:74:103,0,74
chr1	158597309	rs12044097	A	G	1109.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;DB;DP=31;ExcessHet=3.9794;FS=3.863;MQ=59.82;MQRankSum=1.11;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.099;SOR=1.375;VQSLOD=0.904;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,16:31:99:473,0,393
chr1	158607788	rs2518492	T	G	4193.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=2.794;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1331,108,0
chr1	158607935	rs857725	T	G	1087.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=112;ExcessHet=3.0103;FS=1.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-2.240e-01;SOR=0.766;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,43:112:99:1096,0,1607
chr1	158612236	rs863931	A	G	2470.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DB;DP=52;ExcessHet=6.9897;FS=2.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-7.490e-01;SOR=0.538;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:658,0,607
chr1	158612548	rs857721	T	A	249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.047e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=-1.636e+00;SOR=0.551;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:258,0,537
chr1	158618223	rs857677	C	T	744.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DB;DP=22;ExcessHet=6.9897;FS=2.252;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.045;SOR=1.023;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:244,0,350
chr1	158618455	rs2246434	G	A	330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DB;DP=28;ExcessHet=3.0103;FS=8.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-1.417e+00;SOR=1.930;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:339,0,403
chr1	158619728	rs2482965	A	C	5712.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.41;SOR=0.855;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1714,153,0
chr1	158619822	rs857689	A	C	571.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-1.057e+00;SOR=0.892;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:580,0,338
chr1	158624779	rs2276401	T	C	154.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=-6.190e-01;SOR=1.329;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:25:163,0,25
chr1	158626378	rs857691	C	T	793.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300e-02;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=1.41;SOR=0.766;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,36:91:99:802,0,1344
chr1	158631171	rs2518493	A	C	1703.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-3.380e-01;SOR=0.650;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,71:144:99:1712,0,1877
chr1	158637865	rs140998442	GAAA	G	800.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DB;DP=20;ExcessHet=6.9897;FS=5.503;MQ=59.98;MQRankSum=0.00;QD=12.51;ReadPosRankSum=1.51;SOR=1.464;VQSLOD=4.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:20:99:256,0,405
chr1	158639601	rs2298801	A	G	2212.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.400e-02;DB;DP=62;ExcessHet=6.9897;FS=1.783;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.120;SOR=0.549;VQSLOD=6.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,24:62:99:497,0,849
chr1	158639742	rs71632628	C	T	271.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-2.340e-01;SOR=0.760;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:52:280,0,52
chr1	158647312	rs325997	A	G	1108.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.65;SOR=5.549;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:29:319,29,0
chr1	158647495	rs325996	A	T	8486.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.64;SOR=0.745;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2717,264,0
chr1	158647522	rs703121	A	G	4845.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.750e-01;DB;DP=79;ExcessHet=3.9794;FS=5.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=-4.830e-01;SOR=0.846;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,78:79:99:2408,195,0
chr1	158647631	rs325995	T	A	3212.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.55;SOR=2.380;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:915,78,0
chr1	158647669	rs703122	T	C	1217.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.961;DB;DP=16;ExcessHet=3.9794;FS=3.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.96;ReadPosRankSum=-7.590e-01;SOR=1.439;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,15:16:4:520,4,0
chr1	158654786	rs385096	C	T	2217.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=4.840;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:462,39,0
chr1	158654852	rs857937	A	G	3828.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=47;ExcessHet=3.9794;FS=5.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=1.16;SOR=0.337;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1663,141,0
chr1	158655036	rs435080	G	A	10776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=0.986;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2921,288,0
chr1	158655162	rs2564859	C	A	4983.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.45;SOR=2.104;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1338,129,0
chr1	158655315	rs366221	T	A	423.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=4.977;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	158656146	rs376249566	TTAAAAG	T	68.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=2.303;VQSLOD=5.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	158656281	rs2564858	T	C	2912.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.75;SOR=2.162;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:882,78,0
chr1	158656347	rs111674514	C	CAGAG,CAG	4110.05	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.14;SOR=1.305;VQSLOD=5.54;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,28,4:32:45:1342,133,45,971,0,883
chr1	158656432	rs367824971	G	GA	1877.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.504;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.61;ReadPosRankSum=-1.520e-01;SOR=0.690;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,44:48:35:1054,35,0
chr1	158656632	rs200475602	G	GA	1098.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.68;SOR=4.977;VQSLOD=5.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:21:261,21,0
chr1	158656641	rs12096997	C	A	826.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.43;SOR=4.977;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
chr1	158656653	rs452233	A	T	895.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=6.184;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr1	158669342	rs112483049	T	TGTTTG	289.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.33;ReadPosRankSum=0.00;SOR=0.818;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:70:0|1:158669342_T_TGTTTG:105,0,70:158669342
chr1	158669350	rs71270453	T	TTGGTC	61.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.28;ReadPosRankSum=1.65;SOR=0.446;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:70:1|0:158669342_T_TGTTTG:70,0,105:158669342
chr1	158687163	rs28568406	G	A	2619.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.46;SOR=0.920;VQSLOD=18.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2636,228,0
chr1	158687224	rs857703	G	A	3249.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.24;SOR=0.946;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3266,312,0
chr1	158724537	rs34126693	T	C	200.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078e+00;DB;DP=18;ExcessHet=3.0103;FS=2.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-5.340e-01;SOR=0.197;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:209,0,338
chr1	158735595	rs857824	C	T	12028.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=0.982;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3686,347,0
chr1	158735691	rs857825	T	C	13902.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=0.789;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4249,404,0
chr1	158735740	rs857826	A	G	13468.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=0.865;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4170,380,0
chr1	158735892	rs857827	A	G	9054.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=0.725;VQSLOD=19.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2804,240,0
chr1	158736215	rs6666753	G	A	8730.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=0.795;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2299,211,0
chr1	158746336	rs2518524	T	C	558.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-4.460e-01;SOR=1.101;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:238,0,278
chr1	158746678	rs41273541	T	C	2721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299e+00;DB;DP=105;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.520;SOR=0.709;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1216,0,1483
chr1	158746847	rs16841094	A	G	1869.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.030e-01;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.334;SOR=0.696;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,33:65:99:895,0,885
chr1	158907812	rs16841352	G	A	38.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.00;SOR=0.693;VQSLOD=12.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	158909164	rs2325704	C	A	5386.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.564e+00;DB;DP=57;ExcessHet=3.0103;FS=2.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=-3.680e-01;SOR=0.443;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2090,171,0
chr1	158913525	rs856082	A	G	3708.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=2.920;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:96:1|1:158913525_A_G:1409,96,0:158913525
chr1	158913532	rs4656498	C	T	3100.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=33;ExcessHet=3.0103;FS=1.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.68;ReadPosRankSum=-1.610e+00;SOR=1.118;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:158913525_A_G:1446,99,0:158913525
chr1	158914644	.	CA	C	487.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DP=32;ExcessHet=3.0103;FS=1.470;MQ=60.00;MQRankSum=0.00;QD=15.23;ReadPosRankSum=0.840;SOR=0.368;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,19:32:99:496,0,289
chr1	158943295	rs370309729	T	TCA	1089.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.43;ReadPosRankSum=-9.370e-01;SOR=2.833;VQSLOD=6.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,9:10:1:265,1,0
chr1	158943799	rs1633296	T	C	227.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=2.584;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	158946145	rs1772440	G	A	525.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.36;SOR=5.136;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:158946145_G_A:180,12,0:158946145
chr1	158946147	rs1772439	T	G	525.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.35;SOR=5.136;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:158946145_G_A:180,12,0:158946145
chr1	158984259	rs200554406	AATT	A	1111.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.56;SOR=6.518;VQSLOD=4.95;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	158986225	rs856042	T	C	1012.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=6.593;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	158986477	rs866484	G	C	14870.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.19;SOR=0.802;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4360,422,0
chr1	158987941	rs856046	A	G	1851.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=4.712;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:350,24,0
chr1	159002155	rs856058	T	A	908.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=6.273;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr1	159002222	rs861318	A	G	2495.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.60;SOR=5.421;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:782,54,0
chr1	159002301	rs2518553	T	C	5805.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=1.718;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1673,159,0
chr1	159002377	rs1057027	C	A	8261.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=0.789;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2548,234,0
chr1	159002389	rs1057028	T	A	7730.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=0.876;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2195,215,0
chr1	159002557	rs1633256	A	G	1412.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=7.112;VQSLOD=23.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:414,30,0
chr1	159002577	rs147007436	TGGATTG	T	1057.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.46;SOR=6.439;VQSLOD=6.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	159032255	rs2793845	G	T	604.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=5.549;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	159162024	rs4656165	G	C	618.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=53;ExcessHet=3.0103;FS=1.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.795;SOR=0.472;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:627,0,924
chr1	159163119	rs862990	C	T	1451.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=0.608;SOR=3.312;VQSLOD=18.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:585,42,0
chr1	159169211	rs862998	G	A	829.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=14;ExcessHet=3.9794;FS=2.558;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=0.405;SOR=0.162;VQSLOD=6.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:487,42,0
chr1	159169463	rs3027001	C	T	3715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DB;DP=169;ExcessHet=3.9794;FS=0.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-7.530e-01;SOR=0.669;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,71:169:99:1558,0,2443
chr1	159169641	rs862999	T	C	7431.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.212e+00;DB;DP=92;ExcessHet=3.0103;FS=1.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=1.17;SOR=0.571;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2930,276,0
chr1	159170308	rs71086906	GCACACACACA	G,GCA	890.07	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.78;SOR=4.804;VQSLOD=5.92;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,1,5:6:42:249,207,204,42,0,63
chr1	159170318	.	A	*,G	217.70	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=14.51;SOR=4.804;VQSLOD=14.64;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,1,5:6:42:249,207,204,42,0,63
chr1	159170353	rs59956986	TC	T	841.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=19;ExcessHet=3.9794;FS=1.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=-8.300e-01;SOR=0.262;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:19:99:304,0,369
chr1	159174824	rs863001	G	C	18428.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=30.46;SOR=0.710;VQSLOD=4.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5237,530,0
chr1	159174885	rs7550207	T	C	3370.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.340e-01;DB;DP=125;ExcessHet=3.9794;FS=5.396;MQ=59.95;MQRankSum=0.946;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=1.49;SOR=1.017;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:67,58:125:99:1494,0,1762
chr1	159174920	rs863002	C	T	2889.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.810e-01;DB;DP=94;ExcessHet=3.9794;FS=3.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-2.350e-01;SOR=0.979;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,50:94:99:1402,0,1227
chr1	159175004	rs17838198	CT	C	4060.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.320e-01;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=-3.130e-01;SOR=0.760;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1515,132,0
chr1	159175193	rs3027016	A	G	1522.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.610e-01;DB;DP=50;ExcessHet=3.9794;FS=9.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=2.52;SOR=0.196;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:619,0,875
chr1	159175354	rs12075	G	A	14160.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.361e+00;DB;DP=234;ExcessHet=3.9794;FS=1.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=-1.262e+00;SOR=0.594;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,233:234:99:7198,662,0
chr1	159175527	rs13962	G	A	2867.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.262e+00;DB;DP=227;ExcessHet=3.0103;FS=1.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.05;SOR=0.835;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,112:227:99:2876,0,3186
chr1	159272060	rs2251746	T	C	648.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e-01;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=1.60;SOR=0.770;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,25:43:99:657,0,439
chr1	159276153	rs2252226	C	T	249.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=4.174;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr1	159320979	rs10908710	G	A	5033.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.460e-01;DB;DP=117;ExcessHet=1.5490;FS=0.000;MQ=59.99;MQRankSum=-9.610e-01;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.873;SOR=0.715;VQSLOD=2.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3569,350,0
chr1	159321259	rs10908711	G	A	1348.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.11;DB;DP=12;ExcessHet=3.0103;FS=8.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.10;ReadPosRankSum=0.449;SOR=0.042;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:390,36,0
chr1	159402584	rs11419544	G	GT	14092.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=0.994;VQSLOD=5.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4987,427,0
chr1	159402695	rs4491058	A	C	5742.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=1.981;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1827,165,0
chr1	159409196	rs6691297	T	C	4218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=2.265;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1256,117,0
chr1	159409533	rs10908721	G	A	4573.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=1.686;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1550,132,0
chr1	159409734	rs10908722	G	T	16105.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=0.904;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4619,441,0
chr1	159409857	rs12048482	A	G	6682.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.770;DB;DP=157;ExcessHet=1.5490;FS=9.485;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=0.706;SOR=0.330;VQSLOD=5.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:5019,471,0
chr1	159505297	rs4656837	C	T	8167.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.65;DB;DP=151;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.608;SOR=0.749;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,150:151:99:4672,414,0
chr1	159558258	rs2808661	A	G	7963.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.47;SOR=0.737;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1943,174,0
chr1	159684047	.	CCACACACA	C	2086.17	PASS	AC=2;AF=1.00;AN=2;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.63;SOR=0.994;VQSLOD=5.90;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,13:13:40:586,40,0
chr1	159684121	rs58518386	CT	C	257.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228e+00;DB;DP=27;ExcessHet=3.9794;FS=7.414;MQ=59.94;MQRankSum=0.00;QD=4.95;ReadPosRankSum=0.575;SOR=0.194;VQSLOD=3.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,8:27:87:87,0,367
chr1	159684186	rs1417938	T	A	2254.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.240e-01;DB;DP=50;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=-6.210e-01;SOR=0.622;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:669,0,697
chr1	159750731	rs113309030	G	GT	459.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.620;SOR=0.693;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:159750731_G_GT:201,0,193:159750731
chr1	159750732	rs3806188	A	C	457.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.05;ReadPosRankSum=0.672;SOR=0.693;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:159750731_G_GT:201,0,193:159750731
chr1	159750802	rs3806189	G	C	503.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333e+00;DB;DP=39;ExcessHet=3.0103;FS=1.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-6.940e-01;SOR=1.089;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:512,0,691
chr1	159778699	rs12042065	G	A	7880.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.120e-01;DB;DP=179;ExcessHet=1.5490;FS=3.961;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=0.749;SOR=0.982;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,179:179:99:6047,537,0
chr1	159785284	rs4411129	C	G	13396.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.589;DB;DP=179;ExcessHet=3.0103;FS=0.832;MQ=59.97;MQRankSum=-8.390e-01;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=1.52;SOR=0.633;VQSLOD=1.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,179:179:99:5628,537,0
chr1	159796430	rs75087057	G	A	213.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=2.13;SOR=1.270;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:222,0,119
chr1	159799599	rs11422063	C	CA	10235.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=1.981;VQSLOD=4.41;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2853,258,0
chr1	159824205	rs11807946	C	T	68.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=2.303;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	159824967	rs2501340	G	C	16086.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=1.075;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4374,408,0
chr1	159825061	rs2501339	G	C	1431.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=159;ExcessHet=3.0103;FS=2.073;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=1.09;SOR=0.925;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,58:159:99:1440,0,2642
chr1	159825916	rs11587021	C	T	13839.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598e+00;DB;DP=214;ExcessHet=3.0103;FS=1.432;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-1.386e+00;SOR=0.851;VQSLOD=6.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,93:214:99:2251,0,3218
chr1	159826048	rs2494500	C	T	5431.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=2.500;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1638,131,0
chr1	159826561	rs111861505	C	CCA	275.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.47;ReadPosRankSum=0.322;SOR=0.430;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,10:24:99:284,0,429
chr1	159826648	rs34413912	C	T	958.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=1.43;SOR=3.193;VQSLOD=18.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:176,0,189
chr1	159827222	rs2494502	A	G	150.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=1.609;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	159827365	rs10683798	C	CAAA	1066.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.49;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.40;ReadPosRankSum=0.00;SOR=2.352;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:7:64:131,0,64
chr1	159827416	rs4477268	C	A	303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=28;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.912;SOR=1.562;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:312,0,573
chr1	159827456	rs2494503	A	G	6960.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.43;SOR=2.578;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2250,176,0
chr1	159827475	rs11584200	G	A	495.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.058e+00;DB;DP=64;ExcessHet=3.0103;FS=6.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.74;ReadPosRankSum=-1.141e+00;SOR=0.212;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,23:64:99:504,0,1310
chr1	159828128	rs2494504	A	G	6619.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.58;SOR=1.546;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2352,210,0
chr1	159828746	rs2501337	G	A	4796.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.25;SOR=3.722;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1480,119,0
chr1	159832425	rs2494507	G	A	5634.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=29.74;SOR=3.337;VQSLOD=4.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1615,135,0
chr1	159842088	rs2494518	T	A	4791.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.93;SOR=3.056;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1413,122,0
chr1	159842103	rs11265289	C	T	5465.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.29;SOR=2.774;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1536,135,0
chr1	159842566	rs4545332	T	A	2862.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.33;SOR=1.061;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:919,72,0
chr1	159842691	rs4460634	C	G	9062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=1.263;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3016,276,0
chr1	159843131	rs7527219	A	G	185.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=3.611;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr1	159854392	rs2501325	C	A	2658.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=3.073;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:799,63,0
chr1	159860259	rs2501320	G	A	5291.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=106;ExcessHet=1.5490;FS=2.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=0.354;SOR=0.515;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,46:106:99:1160,0,1516
chr1	159860547	rs35075962	C	CT	296.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=59.50;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-1.135e+00;SOR=0.581;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:16:42:42,0,117
chr1	159889686	rs2252815	G	A	9235.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.101e+00;DB;DP=152;ExcessHet=3.9794;FS=2.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.335;SOR=0.936;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,80:152:99:1948,0,1844
chr1	159890459	rs11265297	T	C	1744.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=61;ExcessHet=3.9794;FS=0.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.657;SOR=0.582;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,24:61:99:640,0,1063
chr1	159897126	rs13052	C	T	1141.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862e+00;DB;DP=31;ExcessHet=6.9897;FS=5.340;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-3.800e-02;SOR=0.283;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:357,0,518
chr1	159897388	rs1934074	C	T	2487.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=61;ExcessHet=6.9897;FS=1.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-1.700e-02;SOR=0.587;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:696,0,1005
chr1	159897681	rs142211405	TAA	T,TA	4396.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.60;DB;DP=55;ExcessHet=3.0103;FS=3.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=1.21;SOR=0.108;VQSLOD=6.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,28,25:55:99:1427,541,521,655,0,540
chr1	159898100	rs3747615	A	G	6407.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=139;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-2.200e-01;SOR=0.749;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,77:139:99:2172,0,1817
chr1	159898913	rs7543462	A	G	975.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DB;DP=22;ExcessHet=6.9897;FS=1.020;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=-2.590e-01;SOR=0.469;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,17:22:99:554,0,142
chr1	159902526	rs3827531	T	C	3020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753e+00;DB;DP=65;ExcessHet=6.9897;FS=5.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-3.940e-01;SOR=1.066;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:678,0,1078
chr1	159906156	rs10908750	A	G	2940.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=79;ExcessHet=6.9897;FS=2.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-1.800e-01;SOR=0.577;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,28:79:99:722,0,1531
chr1	159906849	rs10797055	A	G	868.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-3.720e-01;SOR=1.488;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:296,0,229
chr1	159907173	rs35861479	G	GC	148.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=1.07;SOR=1.402;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:45:45,0,143
chr1	159907362	rs7524321	A	G	2290.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531e+00;DB;DP=36;ExcessHet=6.9897;FS=0.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.41;ReadPosRankSum=-1.430e-01;SOR=0.908;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,17:36:99:0|1:159907362_A_G:654,0,1262:159907362
chr1	159907367	rs7526647	T	C	2342.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740e-01;DB;DP=38;ExcessHet=6.9897;FS=0.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=0.500;SOR=0.859;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,17:38:99:0|1:159907362_A_G:651,0,1298:159907362
chr1	159912533	rs112448119	AGTGT	A	723.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=20;ExcessHet=3.9794;FS=1.463;MQ=60.00;MQRankSum=0.00;QD=19.03;ReadPosRankSum=0.304;SOR=1.270;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,9:20:99:345,0,516
chr1	159913053	rs41264841	C	T	911.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-1.375e+00;SOR=0.737;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,32:63:99:920,0,895
chr1	159913388	rs1316275	G	A	746.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.330e-01;DB;DP=9;ExcessHet=3.9794;FS=6.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=0.908;SOR=0.055;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:56:0|1:159913388_G_A:56,0,431:159913388
chr1	159922369	rs2840583	C	T	6205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.98;SOR=1.556;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1507,126,0
chr1	159922458	rs1317520	A	G	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;DB;DP=25;ExcessHet=3.0103;FS=3.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-5.400e-02;SOR=1.755;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:363,0,367
chr1	159922632	rs2789418	G	A	134.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=3.258;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	159922959	rs2249707	C	T	1316.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.45;ReadPosRankSum=-8.020e-01;SOR=2.948;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:83:330,0,83
chr1	159923111	rs2789417	T	G	10143.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.93;ReadPosRankSum=1.24;SOR=0.561;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3348,312,0
chr1	159924257	rs3806199	G	A	91.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-6.080e-01;SOR=0.495;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,138
chr1	159924320	rs2789415	T	G	418.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.55;SOR=4.804;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr1	160012493	rs3120973	G	A	739.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.697e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-1.245e+00;SOR=1.536;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:473,36,0
chr1	160054894	rs11587172	G	T	190.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=1.46;SOR=0.892;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:99:123,0,292
chr1	160061853	rs72704745	G	A	460.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.031e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-8.540e-01;SOR=0.519;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:469,0,447
chr1	160061934	rs12408242	T	C	989.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=55;ExcessHet=3.0103;FS=3.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.531;SOR=1.251;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,26:55:99:0|1:160061934_T_C:998,0,1172:160061934
chr1	160061959	rs12401728	C	T	1131.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=62;ExcessHet=3.0103;FS=1.018;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-2.100e-02;SOR=0.990;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,31:62:99:0|1:160061934_T_C:1140,0,1202:160061934
chr1	160062472	rs2295622	C	T	2838.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491e+00;DB;DP=239;ExcessHet=3.0103;FS=6.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=1.52;SOR=0.415;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:114,125:239:99:2847,0,2823
chr1	160062727	rs2295621	A	G	2061.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=172;ExcessHet=3.0103;FS=1.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.049;SOR=0.790;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,85:172:99:2070,0,1979
chr1	160064592	rs12044027	T	C	1331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-1.980e-01;SOR=0.822;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:518,0,372
chr1	160068068	rs12046504	A	C	1574.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DB;DP=34;ExcessHet=1.5490;FS=1.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.50;ReadPosRankSum=-9.720e-01;SOR=0.963;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,33:34:59:1052,59,0
chr1	160085868	rs2854244	A	C	1468.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=28;ExcessHet=1.5490;FS=3.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=1.06;SOR=0.338;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:531,0,375
chr1	160085955	rs2070700	A	C	317.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-02;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=1.27;SOR=1.473;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:94:94,0,167
chr1	160090674	rs2854246	T	C	6932.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.80;SOR=1.687;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2560,237,0
chr1	160090681	rs373796693	CCCTT	C	10723.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.14;SOR=1.710;VQSLOD=5.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3894,265,0
chr1	160093222	rs2820581	C	T	18715.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=1.115;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,209:209:99:6489,627,0
chr1	160093648	rs41265763	G	A	878.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.257e+00;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-1.960e-01;SOR=0.593;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,33:68:99:887,0,1075
chr1	160093911	rs2820582	T	C	10076.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=1.198;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3034,273,0
chr1	160093927	rs2854248	T	A	2794.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673e+00;DB;DP=78;ExcessHet=3.9794;FS=1.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=2.30;SOR=0.889;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1041,0,974
chr1	160094458	rs1321655	A	G	867.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=6.273;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:352,27,0
chr1	160095127	rs7548116	T	A	2325.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=28;ExcessHet=3.9794;FS=6.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=0.023;SOR=1.486;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:504,0,275
chr1	160097315	rs2295623	C	A	562.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.012e+00;DB;DP=44;ExcessHet=3.0103;FS=10.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.203e+00;SOR=0.032;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:571,0,854
chr1	160097666	rs6695366	G	A	8778.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=97;ExcessHet=3.0103;FS=4.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=-8.940e-01;SOR=0.507;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3092,289,0
chr1	160098927	rs5778151	A	AG	1255.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=-1.061e+00;SOR=0.551;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:469,39,0
chr1	160100201	rs17846713	C	G	2625.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=269;ExcessHet=3.0103;FS=3.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=-1.127e+00;SOR=0.705;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:162,107:269:99:2634,0,4218
chr1	160104721	rs72706621	A	C	102.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:111,0,66
chr1	160121746	rs746362	C	T	1346.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=12;ExcessHet=3.9794;FS=4.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=-4.930e-01;SOR=2.303;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:94:162,0,94
chr1	160122826	rs11265335	G	A	2788.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.610e-01;DB;DP=38;ExcessHet=3.9794;FS=3.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=0.570;SOR=0.384;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:602,0,655
chr1	160124875	rs6427504	G	A	686.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=23;ExcessHet=3.9794;FS=1.118;MQ=59.55;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=2.00;SOR=0.495;VQSLOD=2.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:274,0,267
chr1	160128671	rs4656888	G	A	2047.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.000e+00;DB;DP=30;ExcessHet=3.9794;FS=4.243;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=1.25;SOR=1.481;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1130,90,0
chr1	160128994	rs10908764	C	T	2951.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.86;SOR=2.925;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:960,78,0
chr1	160134205	rs11265338	C	T	11173.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=2.968;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3972,348,0
chr1	160136208	rs10797062	G	A	760.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=11;ExcessHet=3.9794;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=0.366;SOR=2.925;VQSLOD=19.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:94:94,0,301
chr1	160136225	rs41288135	A	G	358.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-7.350e-01;SOR=0.784;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:194,0,456
chr1	160136350	rs7529215	G	A	2608.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=131;ExcessHet=3.9794;FS=4.390;MQ=59.14;MQRankSum=-2.964e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.553;SOR=1.008;VQSLOD=-6.621e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,58:131:99:1472,0,1885
chr1	160137300	rs4656889	A	C	2556.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=36;ExcessHet=3.9794;FS=1.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=0.892;SOR=0.904;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:519,0,658
chr1	160140998	rs1209804	G	A	682.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=1.29;SOR=0.467;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:327,0,254
chr1	160141196	rs625549	C	T	7437.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=0.790;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2579,265,0
chr1	160141285	rs669162	C	T	3211.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=76;ExcessHet=3.9794;FS=1.319;MQ=60.00;MQRankSum=0.00;QD=21.41;ReadPosRankSum=0.259;SOR=0.842;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,45:76:99:0|1:160141285_C_T:1796,0,1965:160141285
chr1	160141286	rs625129	C	G	5564.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228e+00;DB;DP=76;ExcessHet=3.9794;FS=2.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=0.143;SOR=0.541;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,45:76:99:0|1:160141285_C_T:1796,0,1965:160141285
chr1	160141636	rs1891265	C	T	2559.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=47;ExcessHet=3.9794;FS=7.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.775;SOR=1.318;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,18:47:99:478,0,804
chr1	160145586	rs2180750	G	T	331.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DB;DP=13;ExcessHet=3.9794;FS=2.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=1.60;SOR=1.609;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:89:89,0,232
chr1	160145688	rs1884996	C	G	4159.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=43;ExcessHet=3.0103;FS=0.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=-1.079e+00;SOR=0.853;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1513,129,0
chr1	160145707	rs11805919	C	T	1623.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.750e-01;DB;DP=48;ExcessHet=3.9794;FS=5.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-1.915e+00;SOR=1.316;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:742,0,586
chr1	160146173	rs881291	T	C	4584.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.421e+00;DB;DP=85;ExcessHet=1.5490;FS=7.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=0.344;SOR=0.805;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2795,214,0
chr1	160147502	rs731852	T	G	9059.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=82;ExcessHet=3.0103;FS=17.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.90;ReadPosRankSum=-4.310e-01;SOR=0.940;VQSLOD=11.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,82:82:99:1|1:160147502_T_G:3567,250,0:160147502
chr1	160147510	rs731853	G	A	4822.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.313;DB;DP=80;ExcessHet=1.5490;FS=1.972;MQ=60.00;MQRankSum=0.00;QD=25.38;ReadPosRankSum=-6.190e-01;SOR=0.879;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,80:80:99:1|1:160147502_T_G:3499,243,0:160147502
chr1	160151345	rs113684338	CA	C	560.61	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.52;ReadPosRankSum=1.33;SOR=1.067;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:5:14:93,14,0
chr1	160151421	rs11265350	G	C	3084.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.624e+00;DB;DP=59;ExcessHet=1.5490;FS=3.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.68;ReadPosRankSum=-3.600e-01;SOR=0.341;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1913,177,0
chr1	160151450	rs7519748	T	C	6199.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.35;DB;DP=73;ExcessHet=3.0103;FS=0.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=1.25;SOR=0.583;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2301,219,0
chr1	160151624	rs36097870	G	GC	7446.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=135;ExcessHet=1.5490;FS=1.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-1.018e+00;SOR=0.812;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:70,65:135:99:1754,0,2006
chr1	160156027	rs12131640	C	G	1167.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-3.100e-01;SOR=0.635;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,23:54:99:575,0,901
chr1	160164668	rs1186693	T	C	1201.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.38;SOR=3.026;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:367,33,0
chr1	160165095	rs2275703	A	C	3522.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.87;SOR=2.376;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1326,114,0
chr1	160165451	rs10908769	C	T	4001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=34.06;SOR=1.841;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1195,99,0
chr1	160169473	rs959166	T	C	3220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=3.808;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:827,69,0
chr1	160170868	rs11276892	CTAACCCA	C	1021.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.66;SOR=6.358;VQSLOD=7.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	160178356	rs667306	A	G	5527.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=1.334;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1603,150,0
chr1	160178725	rs911233	A	C	450.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=1.765;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:232,21,0
chr1	160187173	rs11265357	A	G	467.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.45;POSITIVE_TRAIN_SITE;QD=25.19;SOR=2.670;VQSLOD=3.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	160214027	rs2275700	T	C	1244.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=6.804;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr1	160232806	rs947494	A	G	461.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=5.283;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr1	160233265	rs11455653	C	CA	158	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:108,15,0
chr1	160233345	rs6688586	C	A	161.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=1.981;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	160236470	rs11265366	T	A	14529.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=59.21;MQRankSum=-2.910e-01;QD=31.05;ReadPosRankSum=1.22;SOR=0.773;VQSLOD=-6.867e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,123:124:99:3931,362,0
chr1	160246989	.	CT	C	75.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.470e-01;DP=17;ExcessHet=3.9794;FS=11.080;MQ=60.00;MQRankSum=0.00;QD=1.75;ReadPosRankSum=0.084;SOR=0.042;VQSLOD=1.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,5:17:82:82,0,266
chr1	160247185	rs10594	G	C	4949.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=1.121;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1362,132,0
chr1	160251792	rs2795067	A	G	8298.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=1.553;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2586,234,0
chr1	160260233	rs2298104	T	C	5307.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.52;SOR=1.195;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1387,120,0
chr1	160262678	rs2369474	T	C	1280.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.61;SOR=2.494;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:470,42,0
chr1	160263124	rs1317944	C	T	15025.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=0.866;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3983,398,0
chr1	160263286	rs368176604	A	AT	135.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DB;DP=12;ExcessHet=6.9897;FS=2.632;MQ=60.00;MQRankSum=0.00;QD=2.42;ReadPosRankSum=0.970;SOR=1.566;VQSLOD=4.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:11:11,0,180
chr1	160265515	rs3789042	T	C	4083.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.67;SOR=2.998;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:744,69,0
chr1	160275434	rs2066320	A	G	16019.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=31.11;SOR=1.152;VQSLOD=4.28;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4603,456,0
chr1	160276709	rs7522166	T	C	681.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=2.303;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr1	160276728	rs77371247	G	C	153.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=1.022;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr1	160302444	rs4656897	G	A	1239.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.28;SOR=3.675;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:423,36,0
chr1	160303416	rs1802778	G	A	9275.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.670e+00;DB;DP=86;ExcessHet=3.0103;FS=3.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=-1.623e+00;SOR=0.353;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2501,257,0
chr1	160309509	rs1886420	T	A	1152.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.02;SOR=6.804;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:194,15,0
chr1	160309664	rs1886419	T	G	8625.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.37;ReadPosRankSum=0.669;SOR=1.221;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,76:77:99:2261,220,0
chr1	160313733	rs1886417	C	A	4858.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.750e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.15;ReadPosRankSum=-1.427e+00;SOR=0.674;VQSLOD=6.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,44:45:89:1279,89,0
chr1	160313744	.	GTT	G,GT	887.55	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.070e-01;DP=22;ExcessHet=3.0103;FS=3.016;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.366;SOR=0.307;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,5,15:22:32:345,220,292,55,0,32
chr1	160318940	rs6669689	A	G	6328.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.21;SOR=1.622;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1696,162,0
chr1	160319074	rs41266883	A	T	463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=16;ExcessHet=3.0103;FS=6.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=-3.370e-01;SOR=2.080;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,13:16:75:472,0,75
chr1	160319136	.	T	A	32.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405e+00;DP=15;ExcessHet=3.0103;FS=6.368;MQ=58.01;MQRankSum=-1.226e+00;NEGATIVE_TRAIN_SITE;QD=2.17;ReadPosRankSum=-3.670e-01;SOR=2.964;VQSLOD=-3.048e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,5:15:40:40,0,255
chr1	160320243	rs5778159	CA	C	52.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=13.16;SOR=3.258;VQSLOD=0.624;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:11:64,11,0
chr1	160320850	rs7540865	G	T	521.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.97;ReadPosRankSum=0.272;SOR=2.303;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr1	160327203	rs3831925	CT	C	2386.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.333e+00;DB;DP=20;ExcessHet=3.0103;FS=12.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=0.861;SOR=0.036;VQSLOD=2.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:590,60,0
chr1	160386082	rs17371401	A	G	554.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.076e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=-1.525e+00;SOR=0.495;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:487,39,0
chr1	160393905	rs12086448	A	G	5594.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.843;DB;DP=114;ExcessHet=1.5490;FS=1.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.41;ReadPosRankSum=-2.500e-02;SOR=0.557;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3948,342,0
chr1	160394173	rs12087593	A	G	4688.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.050e-01;DB;DP=92;ExcessHet=1.5490;FS=6.321;MQ=59.95;MQRankSum=1.14;POSITIVE_TRAIN_SITE;QD=23.68;ReadPosRankSum=0.270;SOR=0.343;VQSLOD=1.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3075,276,0
chr1	160394937	rs17380127	A	C	6308.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.24;DB;DP=136;ExcessHet=1.5490;FS=3.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=0.370;SOR=0.537;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4274,407,0
chr1	160395003	rs17380141	G	A	6001.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.591e+00;DB;DP=130;ExcessHet=1.5490;FS=4.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-3.100e-01;SOR=0.424;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4043,390,0
chr1	160395276	rs5778163	C	CT	108.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=0.319;SOR=0.180;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:16:72,0,16
chr1	160456712	rs3795329	G	C	1305.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.356e+00;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.79;ReadPosRankSum=-3.430e-01;SOR=0.752;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1010,81,0
chr1	160457127	rs1041067	C	T	240.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=59.84;MQRankSum=0.589;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	160459909	rs12119876	C	A	2709.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.091e+00;DB;DP=56;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=-1.701e+00;SOR=0.784;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1672,168,0
chr1	160460099	rs11265413	T	A	701.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.13;DB;DP=7;ExcessHet=1.5490;FS=8.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.154;SOR=2.948;VQSLOD=16.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr1	160466356	rs3795326	A	G	743.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.319e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=-7.340e-01;SOR=1.329;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:508,42,0
chr1	160493178	rs71579673	AT	A	301.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.870e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.18;ReadPosRankSum=1.34;SOR=0.283;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:131,15,0
chr1	160520849	rs114207034	C	T	644.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-02;DB;DP=68;ExcessHet=3.0103;FS=0.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=-1.727e+00;SOR=0.867;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,28:68:99:653,0,1010
chr1	160548880	rs1466933	T	G	520.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=5.136;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	160580015	rs1061217	A	G	1399.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;DB;DP=27;ExcessHet=3.9794;FS=9.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=-1.700e-01;SOR=1.842;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:855,81,0
chr1	160580807	rs349251	T	C	1435.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.63;DB;DP=15;ExcessHet=3.0103;FS=3.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=-9.900e-02;SOR=2.252;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:627,45,0
chr1	160582213	rs2025515	C	A	1017.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.220e-01;DB;DP=20;ExcessHet=1.5490;FS=6.361;MQ=60.00;MQRankSum=0.00;QD=24.83;ReadPosRankSum=-1.422e+00;SOR=1.865;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:713,60,0
chr1	160582248	rs11265449	C	G	1357.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.328e+00;DB;DP=25;ExcessHet=1.5490;FS=1.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=0.968;SOR=1.167;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:962,75,0
chr1	160585554	rs149160	C	G	5780.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.25;SOR=0.892;VQSLOD=4.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1659,171,0
chr1	160585706	rs151607	C	T	1911.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.233;DB;DP=20;ExcessHet=3.0103;FS=3.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.97;ReadPosRankSum=-2.660e-01;SOR=1.700;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:666,60,0
chr1	160604172	rs164287	T	G	329.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.01;SOR=4.407;VQSLOD=19.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	160604863	rs3766362	A	T	715.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.59;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=-1.840e-01;SOR=1.022;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:537,45,0
chr1	160650913	rs4656926	A	G	4779.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;DB;DP=60;ExcessHet=3.0103;FS=0.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=-4.800e-02;SOR=0.570;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2001,180,0
chr1	160681775	rs352684	A	G	1401.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.441e+00;DB;DP=27;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=-5.780e-01;SOR=0.555;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,26:27:39:823,39,0
chr1	160681863	rs2070931	G	T	184.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.16;SOR=3.611;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr1	160717693	rs57058601	G	GT	253.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=7;ExcessHet=3.9794;FS=7.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.366;SOR=3.145;VQSLOD=4.49;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,5:7:43:138,0,43
chr1	160717741	rs17313062	A	G	364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=1.70;SOR=0.892;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,7:24:99:163,0,421
chr1	160717872	rs527733	T	G	7461.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=0.877;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2318,222,0
chr1	160722064	rs527342	A	G	3274.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=3.069;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:854,75,0
chr1	160771761	rs1556517	C	A	4385.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=159;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=1.50;SOR=0.678;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,87:159:99:2060,0,1735
chr1	160788131	rs3817407	T	C	1167.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320e-01;DB;DP=36;ExcessHet=3.9794;FS=2.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=1.10;SOR=0.446;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:624,0,375
chr1	160788270	rs508166	C	T	820.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=6.184;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:273,21,0
chr1	160789196	rs537540	A	C	8913.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.15;SOR=1.922;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2501,216,0
chr1	160789308	rs522897	C	T	1727.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=16;ExcessHet=3.0103;FS=2.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.60;ReadPosRankSum=-7.210e-01;SOR=1.688;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:247,0,228
chr1	160789421	rs539433	A	T	329.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=4.615;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	160793442	rs474131	A	G	11597.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.47;DB;DP=189;ExcessHet=3.9794;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=0.944;SOR=0.751;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,85:189:99:2223,0,2370
chr1	160793560	rs509749	A	G	9207.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=141;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=2.18;SOR=0.748;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,83:141:99:2196,0,1365
chr1	160793962	rs506081	G	C	4913.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595e+00;DB;DP=85;ExcessHet=3.9794;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=-1.290e-01;SOR=0.622;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1262,0,1182
chr1	160797323	rs577453	T	G	1338.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=14;ExcessHet=3.9794;FS=6.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=0.870;SOR=2.465;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:358,0,114
chr1	160797514	rs576334	C	G	4917.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DB;DP=120;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=0.733;SOR=0.710;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,46:120:99:932,0,1769
chr1	160797684	rs574610	A	G	1344.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=20;ExcessHet=3.9794;FS=6.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.087;SOR=2.200;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,5:20:99:146,0,449
chr1	160802643	rs10643819	C	CAT	32.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=1.609;VQSLOD=5.62;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr1	160803802	rs11265493	A	G	2862.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=1.92;SOR=0.638;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1732,177,0
chr1	160808476	rs1319651	C	G	284.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=5.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=0.00;SOR=2.419;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,102
chr1	160809003	rs6682654	G	A	1027.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-1.120e+00;SOR=1.289;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:300,0,580
chr1	160811830	rs2990703	A	G	458.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=9;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=1.24;SOR=0.368;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:55:245,0,55
chr1	160848993	rs3766357	G	A	357.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.86;ReadPosRankSum=1.75;SOR=1.179;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	160849030	rs3766358	T	A	1176.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.308e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.15;ReadPosRankSum=0.931;SOR=1.426;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:488,39,0
chr1	160849060	rs3766359	G	A	1709.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=-7.230e-01;SOR=0.657;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:686,60,0
chr1	160849082	rs3820094	A	G	2610.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.247e+00;DB;DP=40;ExcessHet=3.9794;FS=4.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=0.478;SOR=0.273;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1267,120,0
chr1	160849367	rs2274905	G	T	1121.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.840e-01;DB;DP=14;ExcessHet=3.9794;FS=2.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=-1.700e-01;SOR=1.923;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:575,42,0
chr1	160849420	rs2274906	G	A	366.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.712;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-7.120e-01;SOR=0.527;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr1	160850280	rs4656957	G	A	2218.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DB;DP=40;ExcessHet=3.9794;FS=4.964;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=0.434;SOR=1.210;VQSLOD=7.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1354,120,0
chr1	160850804	.	G	A	493.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497e+00;DP=25;ExcessHet=3.0103;FS=3.565;MQ=60.00;MQRankSum=0.00;QD=19.73;ReadPosRankSum=-3.840e-01;SOR=2.133;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:502,0,363
chr1	160850936	rs2236515	T	C	14866.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.475;DB;DP=244;ExcessHet=3.9794;FS=0.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=0.354;SOR=0.748;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,244:244:99:7647,732,0
chr1	160851534	rs7532133	A	G	1105.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.44;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=1.37;SOR=1.863;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:658,45,0
chr1	160851564	rs6427551	C	G	1403.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.72;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.67;MQRankSum=0.00;QD=28.08;ReadPosRankSum=0.572;SOR=1.179;VQSLOD=3.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:683,54,0
chr1	160851594	rs56380748	GAAAAAAA	G	2825.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.500e-02;DB;DP=30;ExcessHet=3.9794;FS=3.427;MQ=59.63;MQRankSum=-2.410e-01;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=0.402;SOR=1.638;VQSLOD=0.604;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,27:30:99:1366,99,0
chr1	160851619	rs10908808	A	G	4428.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=46;ExcessHet=3.9794;FS=3.578;MQ=59.76;MQRankSum=-4.010e-01;NEGATIVE_TRAIN_SITE;QD=32.33;ReadPosRankSum=1.84;SOR=1.198;VQSLOD=-1.793e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2021,142,0
chr1	160851826	rs2274907	A	T	7529.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=120;ExcessHet=3.9794;FS=1.252;MQ=59.91;MQRankSum=1.61;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=1.65;SOR=0.772;VQSLOD=2.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3971,360,0
chr1	160851894	rs2274908	G	A	5776.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.62;DB;DP=84;ExcessHet=3.9794;FS=2.525;MQ=59.76;MQRankSum=1.43;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=0.259;SOR=0.854;VQSLOD=1.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2862,250,0
chr1	160852022	rs2274909	C	T	5142.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=78;ExcessHet=3.9794;FS=0.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.510;SOR=0.731;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2332,233,0
chr1	160852046	rs2274910	T	C	4568.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=64;ExcessHet=3.9794;FS=0.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.551;SOR=0.760;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2043,192,0
chr1	160852167	rs6427552	C	T	1042.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.726e+00;DB;DP=11;ExcessHet=3.9794;FS=3.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=0.636;SOR=2.303;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:429,33,0
chr1	160854445	rs2039415	T	C	286.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.368e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.816;SOR=0.976;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	160854526	rs2297559	G	A	1072.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.882e+00;DB;DP=15;ExcessHet=3.9794;FS=1.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=-1.070e-01;SOR=0.390;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:563,45,0
chr1	160917902	rs1556519	T	C	741.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.977;SOR=0.569;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:425,0,308
chr1	160917957	rs114657146	G	T	218.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=-5.420e-01;SOR=1.270;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:227,0,137
chr1	160920809	rs3829790	A	G	5748.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=162;ExcessHet=6.9897;FS=3.217;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.057;SOR=0.905;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:92,70:162:99:0|1:160920809_A_G:1645,0,2073:160920809
chr1	160920813	rs790059	A	G	19297.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.82;SOR=0.887;VQSLOD=3.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,161:161:99:1|1:160920809_A_G:5938,484,0:160920809
chr1	160920966	rs6680969	C	T	4618.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=85;ExcessHet=6.9897;FS=2.521;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-8.100e-02;SOR=0.844;VQSLOD=6.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,59:85:99:1648,0,657
chr1	160921230	rs4656971	T	G	1544.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=37;ExcessHet=6.9897;FS=2.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-1.280e-01;SOR=0.252;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,12:37:99:386,0,895
chr1	160922195	rs2252389	A	G	459.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=3.912;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:121,12,0
chr1	160922751	rs4596920	C	T	31.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.94;SOR=1.609;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
chr1	160968609	rs41269993	G	A	2087.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.11;SOR=1.341;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2104,195,0
chr1	160969008	rs3831190	T	TG	3763.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.930e-01;DB;DP=39;ExcessHet=3.0103;FS=0.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.60;ReadPosRankSum=0.088;SOR=0.820;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1267,117,0
chr1	160969110	rs2297222	T	C	3273.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=1.945;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3290,294,0
chr1	160969585	rs790056	C	T	9553.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.648e+00;DB;DP=119;ExcessHet=3.0103;FS=2.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.13;ReadPosRankSum=0.632;SOR=0.865;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3697,356,0
chr1	160969930	rs869985	A	C	3146.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.43;SOR=1.099;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3163,291,0
chr1	160970968	rs2297221	G	A	1482.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=1.666;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1499,123,0
chr1	160971015	rs2297220	G	C	1101.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=0.760;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1118,87,0
chr1	160971146	rs790055	A	G	6851.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.37;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=-4.410e-01;SOR=0.683;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,65:65:99:1|1:160971146_A_G:3007,202,0:160971146
chr1	160971155	rs2297219	G	C	3105.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=1.042;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,71:71:99:1|1:160971146_A_G:3122,214,0:160971146
chr1	160990906	rs2481085	G	A	5572.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.95;DB;DP=104;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=-1.466e+00;SOR=0.665;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3558,312,0
chr1	161007326	rs4339888	G	C	69.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=2.303;VQSLOD=18.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	161009523	rs3737787	G	A	66.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=0.967;SOR=2.225;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:75,0,30
chr1	161010762	rs2073658	C	T	1213.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=3.126;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1230,96,0
chr1	161010774	rs2516841	A	G	2655.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.431e+00;DB;DP=30;ExcessHet=3.0103;FS=5.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=0.984;SOR=0.191;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1121,90,0
chr1	161010791	rs2073657	C	T	800.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.79;SOR=3.352;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:817,68,0
chr1	161011051	.	CAA	C	423.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DP=24;ExcessHet=6.9897;FS=5.749;MQ=58.22;MQRankSum=0.00;QD=8.31;ReadPosRankSum=0.814;SOR=1.547;VQSLOD=4.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,7:24:99:182,0,280
chr1	161011317	rs2516840	A	G	1728.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.642e+00;DB;DP=15;ExcessHet=3.0103;FS=1.297;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.33;ReadPosRankSum=-2.358e+00;SOR=0.998;VQSLOD=5.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:564,45,0
chr1	161011355	rs2073656	G	C	549.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.35;SOR=2.303;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:566,42,0
chr1	161011716	rs2774276	G	C	4576.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.06;DB;DP=53;ExcessHet=3.0103;FS=1.829;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.53;ReadPosRankSum=-2.560e-01;SOR=0.463;VQSLOD=7.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1825,158,0
chr1	161012590	rs2073655	G	A	2046.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=0.826;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2063,186,0
chr1	161013121	rs2516839	C	T	4463.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.411e+00;DB;DP=90;ExcessHet=1.5490;FS=2.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=0.021;SOR=0.519;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2882,270,0
chr1	161013410	rs34611572	CTTT	C	139.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=59.14;MQRankSum=0.00;QD=32.56;ReadPosRankSum=1.38;SOR=1.609;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:99,9,0
chr1	161019040	rs3813609	G	C	8162.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.668e+00;DB;DP=161;ExcessHet=1.5490;FS=1.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=0.931;SOR=0.803;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,159:161:99:4749,399,0
chr1	161020997	rs55728374	C	T	457.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=58.47;POSITIVE_TRAIN_SITE;QD=29.66;SOR=4.977;VQSLOD=4.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:472,33,0
chr1	161021819	rs60840323	AC	A	182.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=31.75;SOR=3.258;VQSLOD=4.72;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:15:1|1:161021819_AC_A:195,15,0:161021819
chr1	161021822	.	ACCACCACCACCACCACCACCACC	A	180.95	PASS	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=29.60;SOR=3.611;VQSLOD=4.47;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:161021819_AC_A:195,15,0:161021819
chr1	161022380	rs4396136	G	A	7570.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=76;ExcessHet=3.0103;FS=4.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=-4.150e-01;SOR=1.030;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2373,228,0
chr1	161022639	rs3813610	C	G	194.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.345e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=1.24;SOR=0.307;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr1	161023353	rs3829791	T	C	380.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=0.618;SOR=1.473;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr1	161024782	rs12728349	C	T	544.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.18;ReadPosRankSum=1.07;SOR=1.136;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:319,24,0
chr1	161024822	rs12748157	A	C	247.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.823e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-3.980e-01;SOR=0.976;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr1	161030059	rs66818503	CA	C	487.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.191;DB;DP=12;ExcessHet=3.9794;FS=1.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.125;SOR=1.287;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:320,36,0
chr1	161043735	rs4656285	A	C	2443.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.232e+00;DB;DP=31;ExcessHet=3.0103;FS=2.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=-1.424e+00;SOR=1.111;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1111,93,0
chr1	161043764	rs4656978	G	A	2279.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=26;ExcessHet=3.0103;FS=1.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=0.487;SOR=0.874;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1012,78,0
chr1	161047125	rs60601836	CTATA	C	2580.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.340e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.41;ReadPosRankSum=1.22;SOR=1.197;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1058,72,0
chr1	161049358	rs3820097	G	A	12830.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=0.860;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3303,332,0
chr1	161068240	rs3813611	G	A	1076.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263e+00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.178;SOR=0.519;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:287,0,448
chr1	161068836	rs11576830	A	C	12530.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.129e+00;DB;DP=391;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-9.160e-01;SOR=0.654;VQSLOD=6.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:207,184:391:99:4483,0,5158
chr1	161088695	rs41270019	A	C	1224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.650e-01;DB;DP=82;ExcessHet=3.0103;FS=4.329;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.790;SOR=0.895;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,49:82:99:1233,0,777
chr1	161089450	rs111473243	C	CTAAACT	5482.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.107;DB;DP=46;ExcessHet=3.9794;FS=1.145;MQ=60.00;MQRankSum=0.00;QD=27.55;ReadPosRankSum=-7.000e-02;SOR=0.607;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2096,141,0
chr1	161101890	rs7517289	A	C	295.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=3.056;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:237,21,0
chr1	161126975	rs12031437	C	G	4586.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.560e-01;DB;DP=66;ExcessHet=3.9794;FS=5.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.174;SOR=0.442;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2048,198,0
chr1	161130701	rs34779722	C	T	6484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.882e+00;DB;DP=495;ExcessHet=3.0103;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-1.113e+00;SOR=0.736;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:248,247:495:99:6493,0,6651
chr1	161136843	rs2301287	C	G	8284.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.492;DB;DP=130;ExcessHet=3.9794;FS=2.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=-6.700e-02;SOR=0.583;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4758,390,0
chr1	161139951	rs12741203	C	T	520.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=6;ExcessHet=3.9794;FS=11.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=1.90;SOR=1.793;VQSLOD=16.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:210,18,0
chr1	161141432	rs6779	C	G	697.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.855;DB;DP=8;ExcessHet=3.9794;FS=2.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.85;ReadPosRankSum=0.803;SOR=1.463;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:355,24,0
chr1	161142230	rs34878968	GA	G	295.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.000e-02;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.86;ReadPosRankSum=0.241;SOR=0.776;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:180,18,0
chr1	161143312	rs11579514	T	C	1434.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=1.33;SOR=0.827;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:862,80,0
chr1	161143969	rs11265561	A	G	2363.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.159e+00;DB;DP=32;ExcessHet=3.9794;FS=1.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=1.83;SOR=0.458;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1208,96,0
chr1	161160872	rs34884997	T	C	712.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DB;DP=10;ExcessHet=6.9897;FS=3.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=0.497;SOR=0.089;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:182,0,176
chr1	161162173	rs7512012	G	A	5580.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.80;DB;DP=56;ExcessHet=3.0103;FS=5.142;MQ=59.92;MQRankSum=-8.980e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.04;ReadPosRankSum=1.42;SOR=1.216;VQSLOD=0.969;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1901,168,0
chr1	161163037	rs4233367	T	C	3584.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506e+00;DB;DP=45;ExcessHet=3.0103;FS=4.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=1.52;SOR=0.296;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1528,135,0
chr1	161163633	rs3813622	C	T	7800.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.27;DB;DP=104;ExcessHet=3.0103;FS=3.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.200;SOR=0.614;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3176,311,0
chr1	161164166	rs11265564	A	G	984.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=0.623;SOR=1.007;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:364,30,0
chr1	161165724	rs146187785	GACAC	G	656.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=11;ExcessHet=3.9794;FS=6.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=1.29;SOR=0.861;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:11:99:155,0,151
chr1	161166723	rs35630547	G	T	1700.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DB;DP=39;ExcessHet=6.9897;FS=5.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-2.300e-01;SOR=1.270;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,15:39:99:474,0,546
chr1	161167698	rs4589131	T	G	3609.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.67;DB;DP=31;ExcessHet=3.0103;FS=3.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.26;ReadPosRankSum=0.590;SOR=2.158;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1294,93,0
chr1	161168004	rs33941127	C	T	5402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=177;ExcessHet=3.9794;FS=3.753;MQ=59.97;MQRankSum=1.02;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=1.44;SOR=0.537;VQSLOD=2.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:88,89:177:99:2394,0,2379
chr1	161172525	rs10908826	C	T	860.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e+00;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=0.327;SOR=1.096;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:287,0,219
chr1	161176137	rs4656993	A	G	10587.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.11;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=-2.610e-01;SOR=0.693;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4277,377,0
chr1	161176519	rs79181095	G	A	284.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-1.500e-02;SOR=1.244;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:108,0,100
chr1	161179877	rs4656994	G	A	3559.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548e+00;DB;DP=87;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-6.790e-01;SOR=0.711;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,42:87:99:1166,0,1181
chr1	161183516	rs1136207	C	T	2577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.890e-01;DB;DP=61;ExcessHet=6.9897;FS=4.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.294;SOR=0.443;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,35:61:99:1086,0,608
chr1	161184059	rs10629771	C	CTG,CTGTGTG	2127.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.080e-01;DB;DP=30;ExcessHet=3.0103;FS=2.282;MQ=60.00;MQRankSum=0.00;QD=30.39;ReadPosRankSum=0.456;SOR=0.277;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,10,14:30:99:732,431,530,171,0,421
chr1	161184097	rs1136224	A	G	375.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.050e-01;DB;DP=23;ExcessHet=3.0103;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=1.60;SOR=1.445;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:383,0,339
chr1	161185058	rs2070901	G	T	1890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.714;SOR=0.715;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,40:60:99:1160,0,462
chr1	161187665	rs2070902	C	T	1086.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=41;ExcessHet=3.9794;FS=5.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-7.810e-01;SOR=1.538;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:507,0,736
chr1	161188936	rs11421	T	C	787.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=0.589;SOR=1.148;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:54:284,0,54
chr1	161191228	rs67857806	G	A	1474.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.694e+00;DB;DP=25;ExcessHet=6.9897;FS=4.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.660;SOR=0.206;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:406,0,410
chr1	161191450	.	CTTTTTTT	C,CTTTTT	2134.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.240e-01;DP=19;ExcessHet=3.0103;FS=7.179;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=-4.090e-01;SOR=2.946;VQSLOD=5.27;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,12,2:19:57:878,57,115,826,0,820
chr1	161191462	.	T	C	507.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188e+00;DP=20;ExcessHet=6.9897;FS=1.260;MQ=59.57;MQRankSum=1.16;QD=9.07;SOR=0.446;VQSLOD=-8.265e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,12:20:99:217,0,207
chr1	161191463	.	T	C	38.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=19;ExcessHet=3.0103;FS=1.764;MQ=59.57;MQRankSum=0.548;NEGATIVE_TRAIN_SITE;QD=2.01;SOR=1.141;VQSLOD=-2.175e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:46:46,0,378
chr1	161191522	rs685	A	G	640.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=-1.116e+00;SOR=0.544;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,7:8:21:0|1:161191522_A_G:260,0,21:161191522
chr1	161191555	rs12143180	G	A	427.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.77;ReadPosRankSum=-6.740e-01;SOR=0.914;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:30:0|1:161191522_A_G:165,0,30:161191522
chr1	161192511	rs5085	C	G	482.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=8;ExcessHet=6.9897;FS=3.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=0.810;SOR=1.659;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:154,0,146
chr1	161192845	rs72374375	CCACACACACACA	C,CCACACA	5435.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.89;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=-8.100e-01;POSITIVE_TRAIN_SITE;QD=34.84;ReadPosRankSum=-3.440e-01;SOR=0.655;VQSLOD=1.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,27,28:68:99:2345,1213,1180,1137,0,1031
chr1	161196166	rs3813628	A	C	1681.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=36;ExcessHet=6.9897;FS=2.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-8.300e-02;SOR=0.992;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:501,0,577
chr1	161197244	rs4233368	C	A	737.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.016e+00;DB;DP=22;ExcessHet=3.9794;FS=2.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=1.22;SOR=0.331;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:327,0,367
chr1	161200487	rs4073054	C	A	3029.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.92;ReadPosRankSum=-1.127e+00;SOR=1.342;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:1139,86,0
chr1	161200586	rs2307418	T	G	2939.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=120;ExcessHet=3.9794;FS=2.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-1.659e+00;SOR=0.869;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,61:120:99:1625,0,1471
chr1	161202605	rs2307424	G	A	4763.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=94;ExcessHet=6.9897;FS=6.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-2.370e-01;SOR=1.032;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,52:94:99:1440,0,907
chr1	161205046	.	GTTTTTT	G	449.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.62;MQRankSum=0.00;QD=29.96;ReadPosRankSum=1.83;SOR=1.329;VQSLOD=5.44;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,8:9:50:0|1:161205046_GTTTTTT_G:305,0,50:161205046
chr1	161205056	.	T	C	452.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.56;MQRankSum=-1.400e-01;QD=34.81;SOR=0.941;VQSLOD=2.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,8:9:50:0|1:161205046_GTTTTTT_G:305,0,50:161205046
chr1	161205966	rs12122674	G	T	387.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767e+00;DB;DP=16;ExcessHet=3.0103;FS=2.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-1.578e+00;SOR=0.223;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:396,0,124
chr1	161206516	rs113093711	G	GTTTTCT	2105.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.43;SOR=7.743;VQSLOD=6.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:23:350,23,0
chr1	161228274	rs4657000	A	C	62.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=54.92;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.71;SOR=1.179;VQSLOD=-5.359e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:75,9,0
chr1	161228800	rs4078110	C	T	3599.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.15;DB;DP=76;ExcessHet=6.9897;FS=0.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-1.247e+00;SOR=0.804;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,35:76:99:1126,0,1196
chr1	161253657	rs4255401	C	T	1468.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.960e-01;DB;DP=25;ExcessHet=1.5490;FS=3.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.25;ReadPosRankSum=-8.320e-01;SOR=1.565;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:458,0,287
chr1	161254280	rs4477295	G	C	621.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=21;ExcessHet=3.9794;FS=1.482;MQ=59.66;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.296;SOR=0.368;VQSLOD=4.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:294,0,346
chr1	161276376	rs6685495	G	A	955.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.283e+00;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.07;SOR=0.629;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,34:70:99:964,0,1155
chr1	161276434	rs6674383	A	G	5941.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.87;SOR=1.309;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1345,108,0
chr1	161279882	rs28703151	A	G	264.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=4.7712;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=1.28;SOR=1.492;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:155,0,66
chr1	161310719	rs11265592	C	T	66.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:75,0,29
chr1	161479745	rs1801274	A	G	13291.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=222;ExcessHet=3.9794;FS=1.925;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-2.470e-01;SOR=0.657;VQSLOD=6.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,120:222:99:2852,0,2322
chr1	161483843	rs145947252	A	G	1049.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=59;ExcessHet=3.0103;FS=3.335;MQ=58.13;MQRankSum=1.59;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=-5.020e-01;SOR=1.545;VQSLOD=-2.937e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,33:59:99:1058,0,666
chr1	161487863	rs143182858	C	T	1330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.229e+00;DB;DP=96;ExcessHet=3.0103;FS=1.668;MQ=47.19;MQRankSum=-9.130e-01;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-5.900e-02;SOR=0.772;VQSLOD=-1.806e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,54:96:99:1339,0,1009
chr1	161488017	rs150991486	T	C	924.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240e-01;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=54.53;MQRankSum=0.633;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.743;SOR=0.829;VQSLOD=-9.430e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,35:54:99:933,0,462
chr1	161495040	rs63749092	C	T	6259.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e+00;DB;DP=419;ExcessHet=3.0103;FS=1.103;MQ=58.17;MQRankSum=-1.380e-01;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=1.90;SOR=0.808;VQSLOD=0.604;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:199,220:419:99:6268,0,5925
chr1	161495477	rs72633678	A	T	39148.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=486;ExcessHet=3.0103;FS=0.000;MQ=58.54;MQRankSum=-1.392e+00;QD=26.15;ReadPosRankSum=-3.500e-02;SOR=0.631;VQSLOD=-6.604e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:250,236:486:99:6051,0,6359
chr1	161495885	rs404508	T	C	19218.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=235;ExcessHet=3.0103;FS=0.709;MQ=59.77;MQRankSum=0.971;POSITIVE_TRAIN_SITE;QD=26.80;ReadPosRankSum=0.876;SOR=0.702;VQSLOD=0.854;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:122,113:235:99:2745,0,3154
chr1	161496134	rs753856	C	G	1083.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=57.33;MQRankSum=-5.923e+00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-5.770e-01;SOR=0.753;VQSLOD=-1.739e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:72,40:112:99:1092,0,2143
chr1	161496178	rs368844	G	A	1260.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.20;DB;DP=110;ExcessHet=3.0103;FS=7.827;MQ=53.44;MQRankSum=-9.393e+00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.109e+00;SOR=1.031;VQSLOD=-2.694e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:70,40:110:99:1269,0,1862
chr1	161514542	rs396991	A	C	1572.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430e+00;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=56.60;MQRankSum=-5.128e+00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-3.360e-01;SOR=0.793;VQSLOD=-1.672e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,57:106:99:1581,0,1441
chr1	161518159	rs200225944	C	T	1367.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=105;ExcessHet=3.9794;FS=3.826;MQ=38.66;MQRankSum=-3.112e+00;QD=5.67;ReadPosRankSum=-9.240e-01;SOR=0.407;VQSLOD=-4.750e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,28:105:99:653,0,2527
chr1	161518314	rs114535887	C	T	4696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.910e-01;DB;DP=581;ExcessHet=3.0103;FS=0.000;MQ=54.58;MQRankSum=7.96;POSITIVE_TRAIN_SITE;QD=8.08;ReadPosRankSum=-4.150e-01;SOR=0.681;VQSLOD=-4.649e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:371,210:581:99:4705,0,9677
chr1	161518908	rs138032965	C	T	293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=25;ExcessHet=3.0103;FS=1.799;MQ=47.37;MQRankSum=-1.396e+00;QD=11.73;ReadPosRankSum=0.521;SOR=1.193;VQSLOD=-3.238e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:302,0,375
chr1	161559256	rs114945036	C	T	524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DB;DP=36;ExcessHet=3.0103;FS=1.648;MQ=60.00;MQRankSum=0.00;QD=14.56;ReadPosRankSum=-2.187e+00;SOR=0.361;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:533,0,568
chr1	161559327	rs3933769	A	G	4511.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193e+00;DB;DP=105;ExcessHet=1.5490;FS=0.000;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.962;SOR=0.662;VQSLOD=6.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,48:105:99:1190,0,1536
chr1	161559571	rs138747765	C	T	2194.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548e+00;DB;DP=149;ExcessHet=3.0103;FS=2.139;MQ=47.12;MQRankSum=-3.828e+00;QD=14.73;ReadPosRankSum=1.62;SOR=0.504;VQSLOD=-3.656e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,85:149:99:2203,0,1645
chr1	161559720	rs78603008	G	A	690.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DB;DP=51;ExcessHet=3.0103;FS=1.128;MQ=59.94;MQRankSum=-9.410e-01;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=1.12;SOR=0.933;VQSLOD=1.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,26:51:99:699,0,610
chr1	161561716	rs116188507	G	A	347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.55;DB;DP=71;ExcessHet=3.0103;FS=2.472;MQ=52.24;MQRankSum=-5.813e+00;QD=4.89;ReadPosRankSum=1.11;SOR=1.414;VQSLOD=-4.143e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,17:71:99:356,0,1679
chr1	161561734	rs1771555	G	A	923.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100e-01;DB;DP=81;ExcessHet=3.9794;FS=7.420;MQ=48.14;MQRankSum=-2.701e+00;POSITIVE_TRAIN_SITE;QD=6.50;ReadPosRankSum=2.89;SOR=1.886;VQSLOD=-2.395e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,15:81:99:252,0,2157
chr1	161563039	rs61801817	T	C	208.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=57.67;POSITIVE_TRAIN_SITE;QD=34.73;SOR=2.303;VQSLOD=3.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:5:1|1:161563039_T_C:88,5,0:161563039
chr1	161563052	rs116307552	G	A	75.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.89;SOR=2.303;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:5:1|1:161563039_T_C:88,5,0:161563039
chr1	161565324	rs61801822	C	T	3831.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622e+00;DB;DP=78;ExcessHet=1.5490;FS=3.460;MQ=51.89;MQRankSum=-5.322e+00;QD=22.95;ReadPosRankSum=-1.311e+00;SOR=1.065;VQSLOD=-2.834e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,32:78:99:760,0,1398
chr1	161565479	rs111504845	G	A	2097.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DB;DP=69;ExcessHet=3.9794;FS=1.317;MQ=57.17;MQRankSum=-8.350e-01;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-4.450e-01;SOR=0.860;VQSLOD=-8.167e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,29:69:99:721,0,1165
chr1	161565622	rs115243106	A	G	164.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=8;ExcessHet=3.0103;FS=4.260;MQ=47.81;MQRankSum=-2.369e+00;QD=20.53;ReadPosRankSum=1.61;SOR=2.833;VQSLOD=-3.475e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:67:173,0,67
chr1	161577204	rs200837054	G	T	6313.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.189e+00;DB;DP=225;ExcessHet=3.9794;FS=0.000;MQ=50.42;MQRankSum=2.25;NEGATIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-1.069e+00;SOR=0.711;VQSLOD=-3.832e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,118:225:99:3295,0,3262
chr1	161577669	rs61802307	G	A	3184.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.904e+00;DB;DP=122;ExcessHet=3.9794;FS=0.454;MQ=57.78;MQRankSum=0.953;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=1.42;SOR=0.744;VQSLOD=-1.084e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,57:122:99:1416,0,1979
chr1	161594226	rs61803008	C	T	1893.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=52.76;QD=31.98;SOR=2.303;VQSLOD=1.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:682,66,0
chr1	161594246	rs61803009	G	T	2178.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=51.51;QD=32.52;SOR=1.946;VQSLOD=0.740;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:860,87,0
chr1	161594525	rs61803010	G	C	5926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=47.72;QD=34.58;SOR=1.828;VQSLOD=-2.115e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,71:71:99:1|1:161594525_G_C:3097,214,0:161594525
chr1	161594526	rs61803011	T	G	5926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=47.17;QD=28.30;SOR=1.944;VQSLOD=-2.101e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,68:68:99:1|1:161594525_G_C:3097,214,0:161594525
chr1	161594561	rs61803012	C	G	2635.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.263e+00;DB;DP=46;ExcessHet=3.0103;FS=2.381;MQ=47.06;MQRankSum=2.62;QD=30.65;ReadPosRankSum=1.40;SOR=0.309;VQSLOD=-3.952e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1513,138,0
chr1	161596283	rs418215	G	A	8429.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=0.4576;FS=0.000;MQ=44.72;POSITIVE_TRAIN_SITE;QD=33.76;SOR=4.768;VQSLOD=-3.375e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4214,351,0
chr1	161599693	rs76714703	T	C	10044.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=39.32;MQRankSum=1.46;POSITIVE_TRAIN_SITE;QD=30.53;ReadPosRankSum=0.610;SOR=0.789;VQSLOD=-4.671e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,125:127:99:3766,331,0
chr1	161600287	rs143868437	AT	A	1047.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.620e-01;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=48.97;MQRankSum=-1.677e+00;QD=23.82;ReadPosRankSum=0.870;SOR=0.693;VQSLOD=0.415;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,16:26:99:448,0,258
chr1	161600787	rs3883928	G	C	895.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=53.14;QD=24.57;SOR=4.804;VQSLOD=1.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:345,24,0
chr1	161600792	rs76732376	A	C	224.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=48.08;MQRankSum=-2.369e+00;QD=20.40;ReadPosRankSum=-4.140e-01;SOR=0.859;VQSLOD=-3.183e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:105,0,186
chr1	161600832	rs3883934	G	T	1293.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.904e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=57.26;MQRankSum=1.74;NEGATIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=-1.228e+00;SOR=1.101;VQSLOD=-2.288e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:326,0,174
chr1	161600995	rs34085961	C	T	2537.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.234e+00;DB;DP=122;ExcessHet=1.5490;FS=4.541;MQ=60.00;MQRankSum=0.00;QD=14.76;ReadPosRankSum=1.04;SOR=0.813;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,54:122:99:1041,0,1644
chr1	161601118	rs61803026	G	C	628.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.66;ReadPosRankSum=0.922;SOR=0.573;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:326,0,488
chr1	161601133	rs61803027	T	C	1699.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=5.186;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:794,60,0
chr1	161601173	rs34322334	A	T	241.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.13;ReadPosRankSum=-7.180e-01;SOR=0.818;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:126,0,249
chr1	161642985	rs182968886	G	A	2877.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-02;DB;DP=84;ExcessHet=3.9794;FS=7.219;MQ=44.06;MQRankSum=6.33;QD=14.53;ReadPosRankSum=1.41;SOR=0.371;VQSLOD=-4.310e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,53:84:99:1288,0,727
chr1	161643044	rs74870676	A	G	1092.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=65;ExcessHet=3.9794;FS=13.476;MQ=51.28;MQRankSum=-6.168e+00;QD=7.69;ReadPosRankSum=-1.313e+00;SOR=0.534;VQSLOD=-4.133e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,13:65:99:211,0,1627
chr1	161643546	rs1771554	T	C	144.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DB;DP=26;ExcessHet=3.0103;FS=2.918;MQ=55.13;MQRankSum=-3.785e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.55;ReadPosRankSum=-1.529e+00;SOR=0.148;VQSLOD=-1.611e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,4:26:99:0|1:161643546_T_C:153,0,1610:161643546
chr1	161643547	rs373333031	G	A	144.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.931e+00;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=52.26;MQRankSum=-3.925e+00;NEGATIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-2.077e+00;SOR=0.260;VQSLOD=-4.024e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,6:30:99:0|1:161643546_T_C:153,0,1610:161643546
chr1	161644976	rs1674758	C	A	159.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=57.64;POSITIVE_TRAIN_SITE;QD=31.83;SOR=1.981;VQSLOD=5.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:176,15,0
chr1	161645259	rs1674759	T	G	667.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=1.47;SOR=1.519;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:63:150,0,63
chr1	161647533	rs844	A	G	345.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.30;ReadPosRankSum=0.366;SOR=0.693;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:30:184,0,30
chr1	161676904	rs1340977	T	C	637.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-03;DB;DP=13;ExcessHet=1.5490;FS=3.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=-7.000e-02;SOR=2.303;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:238,0,172
chr1	161676970	rs1340978	A	G	1405.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=0.911;SOR=0.760;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:576,0,348
chr1	161680258	rs6427618	G	A	5660.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.960e-01;DB;DP=123;ExcessHet=1.5490;FS=1.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=0.519;SOR=0.564;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,65:123:99:1545,0,1471
chr1	161680868	rs1934908	T	C	826.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.347;DB;DP=20;ExcessHet=1.5490;FS=1.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.97;ReadPosRankSum=0.988;SOR=0.411;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:268,0,351
chr1	161681661	rs1105238	C	G	2579.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470e+00;DB;DP=122;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.215e+00;SOR=0.680;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,56:122:99:1304,0,1695
chr1	161681780	rs2275603	A	G	5731.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012e+00;DB;DP=137;ExcessHet=1.5490;FS=11.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=-1.406e+00;SOR=0.319;VQSLOD=18.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,61:137:99:1434,0,2137
chr1	161683136	rs11746	G	A	5581.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DB;DP=105;ExcessHet=1.5490;FS=1.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=0.984;SOR=0.531;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,54:105:99:1331,0,1201
chr1	161695381	rs1847382	G	C	673.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.74;SOR=4.407;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
chr1	161695639	rs7520519	G	T	13572.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.19;SOR=1.022;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4155,378,0
chr1	161696088	rs1417582	T	C	12598.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=186;ExcessHet=3.0103;FS=1.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=0.169;SOR=0.553;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5858,558,0
chr1	161696782	rs11585450	G	C	4974.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.33;SOR=1.902;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3014,300,0
chr1	161696998	rs1875763	C	G	1825.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.36;SOR=5.630;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:865,72,0
chr1	161721351	rs7540096	A	G	1635.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=31;ExcessHet=6.9897;FS=3.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.238;SOR=1.210;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:443,0,481
chr1	161721707	rs1063178	C	T	2862.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=122;ExcessHet=3.9794;FS=4.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=0.480;SOR=0.823;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,43:122:99:1005,0,1944
chr1	161722272	rs10917852	C	A	1366.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;DB;DP=46;ExcessHet=3.9794;FS=3.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-2.860e-01;SOR=0.428;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:554,0,450
chr1	161722779	rs35439833	C	CAAA	2615.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.21;DB;DP=21;ExcessHet=3.0103;FS=9.698;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=-6.810e-01;SOR=2.867;VQSLOD=4.07;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:21:67:1014,67,0
chr1	161736035	rs2298019	A	G	5408.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=1.201;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1727,150,0
chr1	161751741	rs1058405	A	G	870.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990e-01;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.059;SOR=0.771;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,37:70:99:879,0,796
chr1	161822959	rs2340717	C	T	1348.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.72;SOR=2.191;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:301,27,0
chr1	161823011	rs2257107	T	A	1292.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=1.75;SOR=0.641;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:767,78,0
chr1	161823197	rs3215134	G	GT	4758.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.387;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=-5.800e-02;SOR=0.728;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1872,159,0
chr1	161832834	rs2340719	G	A	526.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=5.283;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:161832834_G_A:90,6,0:161832834
chr1	161832842	rs2340720	T	G	181.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=0.135;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:161832834_G_A:90,6,0:161832834
chr1	161833233	rs3767632	G	A	546.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DB;DP=20;ExcessHet=3.9794;FS=1.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-7.100e-02;SOR=0.373;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:279,0,222
chr1	161928327	rs9482	A	G	3851.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.57;SOR=1.057;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2015,198,0
chr1	161928568	rs13401	G	A	109.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=2.833;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	161954365	rs9427066	C	G	882.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.21;SOR=3.160;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr1	161954448	rs12726227	C	T	1185.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.48;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=0.388;SOR=1.017;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:529,42,0
chr1	161967515	rs201490367	CT	C	193.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=1.53;SOR=1.426;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:202,0,272
chr1	161967681	rs2499836	A	G	13812.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.29;SOR=0.915;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4048,399,0
chr1	161968297	rs12756866	T	G	1345.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=4.743;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:461,33,0
chr1	161976234	rs12022536	A	G	6435.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=92;ExcessHet=3.0103;FS=1.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=-1.222e+00;SOR=0.744;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2627,275,0
chr1	161976272	rs34863451	G	GA	5877.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.200e-01;DB;DP=78;ExcessHet=3.0103;FS=5.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=0.689;SOR=0.115;VQSLOD=6.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,74:78:99:2102,208,0
chr1	161989418	rs6427645	T	C	288.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.58;SOR=2.833;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
chr1	162123945	rs10918776	G	C	701.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=4.294;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:718,51,0
chr1	162257033	rs10800405	C	G	251.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e-01;DB;DP=28;ExcessHet=3.0103;FS=1.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=-4.180e-01;SOR=0.368;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:260,0,382
chr1	162270055	rs2812136	T	C	155.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.04;SOR=3.258;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr1	162302635	rs347306	T	C	1390.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.758;DB;DP=23;ExcessHet=3.9794;FS=3.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.785;SOR=1.382;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:355,0,273
chr1	162302689	rs347307	C	T	2755.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=48;ExcessHet=3.9794;FS=7.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=-7.100e-02;SOR=1.307;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:533,0,612
chr1	162313518	rs3751285	A	G	1709.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=113;ExcessHet=3.0103;FS=3.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.950;SOR=0.385;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,62:113:99:1718,0,1341
chr1	162313597	rs347278	T	C	16232.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.587;DB;DP=204;ExcessHet=3.0103;FS=0.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=-4.800e-01;SOR=0.574;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,204:204:99:6240,612,0
chr1	162313735	rs3751284	C	T	1466.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=146;ExcessHet=3.0103;FS=4.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.083;SOR=1.034;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,61:146:99:1475,0,2021
chr1	162325369	rs34771279	G	A	122.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=-1.718e+00;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:131,0,150
chr1	162330927	rs7521206	C	G	427.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-01;DB;DP=10;ExcessHet=3.9794;FS=7.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=1.23;SOR=3.126;VQSLOD=16.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:153,0,149
chr1	162335052	rs905721	C	T	2030.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=47;ExcessHet=3.9794;FS=1.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.82;SOR=0.533;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,28:47:99:810,0,474
chr1	162335256	rs348624	C	T	3110.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=120;ExcessHet=3.9794;FS=4.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=1.78;SOR=0.496;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,64:120:99:1412,0,1357
chr1	162335424	rs1964052	T	C	1524.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e-01;DB;DP=16;ExcessHet=3.9794;FS=3.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=0.511;SOR=0.199;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:219,0,259
chr1	162343774	rs7512126	A	G	2279.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;DB;DP=88;ExcessHet=3.9794;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=2.00;SOR=0.916;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,38:88:99:943,0,1219
chr1	162344102	rs2282397	C	T	3500.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.818;DB;DP=140;ExcessHet=3.9794;FS=1.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=1.91;SOR=0.785;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,66:140:99:1578,0,1917
chr1	162344390	rs164159	A	G	8832.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=1.999;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3026,276,0
chr1	162345091	rs164181	G	A	8546.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=2.479;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2628,236,0
chr1	162345294	rs3737312	G	T	3640.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672e+00;DB;DP=118;ExcessHet=3.9794;FS=2.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.97;SOR=0.834;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,59:118:99:1488,0,1657
chr1	162345472	rs164183	C	T	2632.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=3.198;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:943,78,0
chr1	162345629	rs164184	C	T	118.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=1.609;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	162346256	rs11350412	CA	C	573.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.06;SOR=4.407;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:2:124,0,2
chr1	162346433	rs150155141	CA	C	1715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=72;ExcessHet=3.9794;FS=7.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.644;SOR=1.226;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,36:72:99:884,0,878
chr1	162348662	rs164188	C	T	3467.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.22;SOR=3.684;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1428,117,0
chr1	162352111	rs164189	G	A	1340.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.27;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.00;SOR=0.784;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:489,42,0
chr1	162367071	rs17852003	C	T	2223.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.274e+00;DB;DP=39;ExcessHet=3.9794;FS=2.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.088;SOR=0.492;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1262,117,0
chr1	162372718	rs3121196	G	A	965.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=4.804;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:385,27,0
chr1	162372800	rs11589974	G	A	32	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=1.609;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
chr1	162467014	rs10919549	C	G	5613.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=100;ExcessHet=3.9794;FS=5.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=2.26;SOR=0.998;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,52:100:99:1254,0,1172
chr1	162470164	rs59937530	AGGG	A	682.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=-1.282e+00;SOR=3.500;VQSLOD=5.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	162470191	rs2342714	C	T	376.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.04;ReadPosRankSum=0.431;SOR=2.670;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:71,0,36
chr1	162470503	rs905718	G	A	184.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.87;ReadPosRankSum=-3.190e-01;SOR=1.179;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,1:4:29:29,0,102
chr1	162470961	rs5778280	A	AT	490.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=2.18;SOR=0.954;VQSLOD=6.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,4:14:49:49,0,236
chr1	162473401	.	CAA	C	664.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DP=14;ExcessHet=3.9794;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=-1.260e-01;SOR=0.394;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:14:72:119,0,72
chr1	162482820	rs3844250	G	A	139.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,75
chr1	162557578	rs41271987	C	T	330.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.9794;FS=3.010;MQ=59.59;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-6.970e-01;SOR=0.169;VQSLOD=3.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:64:209,0,64
chr1	162558536	.	T	G	454.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DP=33;ExcessHet=3.0103;FS=1.475;MQ=60.00;MQRankSum=0.00;QD=13.77;ReadPosRankSum=-1.067e+00;SOR=1.270;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:463,0,405
chr1	162558705	rs12022205	C	T	1213.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=50;ExcessHet=3.9794;FS=2.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.143;SOR=1.024;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:556,0,656
chr1	162562775	rs1510267	A	G	1730.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=7.569;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:314,24,0
chr1	162722846	rs1632311	C	G	5229.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=1.656;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1848,165,0
chr1	162725655	rs1115570	A	C	1687.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=5.507;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:266,21,0
chr1	162731404	rs2684867	C	T	2696.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.11;SOR=5.580;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:618,45,0
chr1	162736821	rs5778290	G	GA	461.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=-3.660e-01;SOR=1.802;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,7:8:6:179,6,0
chr1	162736851	rs200135034	G	GAAAA	2087.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=5.283;VQSLOD=7.11;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:162736851_G_GAAAA:720,48,0:162736851
chr1	162736856	rs1533083	C	A	2119.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.32;SOR=5.507;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:162736851_G_GAAAA:720,48,0:162736851
chr1	162740327	rs1780003	T	C	15847.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=1.328;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4999,465,0
chr1	162742180	rs1704762	T	C	2679.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.44;SOR=2.537;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:888,69,0
chr1	162743418	rs1355287	G	T	4888.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.26;SOR=2.072;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1855,179,0
chr1	162748147	rs1848861	G	A	303.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.89;SOR=4.407;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr1	162748588	rs907074	C	A	3071.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.43;SOR=3.509;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:909,75,0
chr1	162749761	rs1510315	T	C	1393.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.52;SOR=5.670;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:543,39,0
chr1	162750208	rs1972086	C	T	1222.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.21;SOR=3.407;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:162750208_C_T:370,27,0:162750208
chr1	162750210	rs5778295	CTT	C	1197.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=3.258;VQSLOD=6.09;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:27:1|1:162750208_C_T:370,27,0:162750208
chr1	162754049	rs11338	G	A	2113.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.802e+00;DB;DP=17;ExcessHet=3.0103;FS=1.425;MQ=58.03;MQRankSum=0.334;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=-1.153e+00;SOR=0.461;VQSLOD=-1.237e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:50:551,50,0
chr1	162754244	rs61812969	T	G	3030.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=38.67;POSITIVE_TRAIN_SITE;QD=29.21;SOR=3.086;VQSLOD=-4.614e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:712,51,0
chr1	162760551	rs1704754	C	T	17438.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.152e+00;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=54.26;MQRankSum=2.10;NEGATIVE_TRAIN_SITE;QD=33.47;ReadPosRankSum=-6.400e-02;SOR=0.686;VQSLOD=-3.006e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,175:175:99:1|1:162760551_C_T:7867,539,0:162760551
chr1	162760554	rs71519246	T	C	22467.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=54.51;QD=33.84;SOR=1.453;VQSLOD=0.924;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,177:177:99:1|1:162760551_C_T:7867,539,0:162760551
chr1	162765475	rs2684884	G	C	5535.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=45.30;QD=30.42;SOR=1.105;VQSLOD=-3.734e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1507,159,0
chr1	162766476	rs1780019	C	T	12042.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=166;ExcessHet=3.0103;FS=2.266;MQ=59.59;MQRankSum=1.40;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=-9.800e-02;SOR=0.645;VQSLOD=0.856;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5117,498,0
chr1	162768784	rs58731372	CA	C	305.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.070e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.95;ReadPosRankSum=-1.184e+00;SOR=0.646;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:11:42:136,0,42
chr1	162768939	rs71096414	TA	T	684.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.17;SOR=1.981;VQSLOD=6.27;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr1	162822771	rs2684878	A	C	2008.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.11;ReadPosRankSum=1.75;SOR=0.929;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:814,69,0
chr1	163038613	rs7515900	C	A	961.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e+00;DB;DP=19;ExcessHet=6.9897;FS=1.470;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-1.386e+00;SOR=0.412;VQSLOD=6.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:229,0,281
chr1	163038853	rs10917671	G	A	1687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994e+00;DB;DP=38;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-9.100e-02;SOR=0.741;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:430,0,680
chr1	163042020	rs5778312	C	CAA	478.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=4.977;VQSLOD=6.78;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr1	163043088	rs10799897	A	G	577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DB;DP=10;ExcessHet=6.9897;FS=1.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-4.050e-01;SOR=0.368;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:158,0,125
chr1	163117351	rs3768560	G	T	2734.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=32;ExcessHet=3.9794;FS=4.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=-2.530e-01;SOR=1.192;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:319,0,494
chr1	163122528	rs1354939	G	C	1316.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.281;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=0.623;SOR=1.157;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:618,45,0
chr1	163142168	rs10917690	A	G	684.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.852;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:115,0,64
chr1	163142537	rs10917691	G	A	1805.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=18;ExcessHet=3.9794;FS=1.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=0.776;SOR=1.413;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:352,0,222
chr1	163142555	rs12035879	G	A	1277.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=1.14;SOR=1.519;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:212,0,170
chr1	163187232	rs56177331	T	C	104.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.13;ReadPosRankSum=0.850;SOR=0.941;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:99:113,0,440
chr1	163187263	rs2814368	G	A	1648.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349e+00;DB;DP=27;ExcessHet=6.9897;FS=5.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-4.680e-01;SOR=1.330;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:210,0,570
chr1	163298768	.	TA	T	744.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.230e-01;DP=40;ExcessHet=6.9897;FS=1.636;MQ=59.83;MQRankSum=0.00;QD=5.52;ReadPosRankSum=0.095;SOR=0.526;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,6:40:57:57,0,624
chr1	163308027	rs11330875	TA	T	204.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=20.49;SOR=4.804;VQSLOD=2.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:105,12,0
chr1	163309302	rs2999852	C	T	3673.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.70;SOR=2.552;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1167,102,0
chr1	163310259	rs61812220	A	G	668.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320e-01;DB;DP=46;ExcessHet=3.0103;FS=1.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=0.132;SOR=0.941;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:677,0,522
chr1	164529469	rs146379931	T	TTG	1807.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=70;ExcessHet=3.9794;FS=0.644;MQ=60.00;MQRankSum=0.00;QD=12.38;ReadPosRankSum=1.61;SOR=0.765;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,27:70:99:761,0,1875
chr1	164529471	rs2275559	G	C	1149.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DB;DP=77;ExcessHet=3.0103;FS=0.933;MQ=60.00;MQRankSum=0.00;QD=15.32;ReadPosRankSum=1.77;SOR=0.942;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,41:77:99:1319,0,1164
chr1	164529666	rs2275560	G	A	275.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:141,0,27
chr1	164559449	rs35639960	G	GA	223.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.74;ReadPosRankSum=0.095;SOR=1.022;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:15:67,0,15
chr1	164559536	rs1780335	A	G	1608.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.755e+00;DB;DP=28;ExcessHet=3.9794;FS=2.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.973;SOR=0.402;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:873,84,0
chr1	164789444	rs1538488	A	G	3861.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=2.465;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1309,99,0
chr1	165173216	rs1354509	A	G	7076.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.38;SOR=1.621;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2622,252,0
chr1	165175374	rs4656435	G	A	3407.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=0.4576;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.85;SOR=2.071;VQSLOD=5.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1585,149,0
chr1	165180089	rs1532815	T	A	3632.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=0.726;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1919,188,0
chr1	165180139	rs115716247	T	C	670.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.037;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.870;SOR=0.622;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:679,0,645
chr1	165218476	rs138515582	AAGAGATTACTCTG	A	139.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.91;ReadPosRankSum=0.967;SOR=0.412;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,119
chr1	165218533	rs12747984	A	G	267.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.36;ReadPosRankSum=1.25;SOR=0.527;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:193,0,169
chr1	165218679	rs9970062	C	T	4161.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540e+00;DB;DP=95;ExcessHet=6.9897;FS=1.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-3.540e-01;SOR=0.828;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,54:95:99:1404,0,1117
chr1	165218792	rs10753668	G	A	4339.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DB;DP=187;ExcessHet=3.9794;FS=2.870;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.55;SOR=0.742;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,94:187:99:2442,0,2324
chr1	165322654	rs145554599	G	GA	245.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.699;SOR=0.914;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:44:106,0,44
chr1	165375835	rs283698	A	G	1375.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=-2.210e-01;SOR=0.754;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:748,60,0
chr1	165375895	rs283697	A	C	2382.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.25;DB;DP=37;ExcessHet=3.9794;FS=0.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=0.309;SOR=0.773;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1241,111,0
chr1	165376043	rs283696	T	C	4721.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=90;ExcessHet=3.9794;FS=1.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=1.48;SOR=0.743;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2717,270,0
chr1	165376227	rs111545739	C	CCG	1673.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DB;DP=24;ExcessHet=3.9794;FS=1.043;MQ=60.00;MQRankSum=0.00;QD=22.93;ReadPosRankSum=-7.500e-02;SOR=0.880;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:165376227_C_CCG:1069,72,0:165376227
chr1	165376231	rs113398546	CTG	C	1636.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.039;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.74;ReadPosRankSum=0.112;SOR=0.678;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:165376227_C_CCG:1035,69,0:165376227
chr1	165377389	rs283692	T	C	2690.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=29.11;SOR=7.054;VQSLOD=6.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:874,69,0
chr1	165378729	rs58727696	TACAC	T	3318.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=2.168;VQSLOD=4.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1357,93,0
chr1	165386158	rs2281985	T	C	606.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=0.413;SOR=1.708;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
chr1	165386567	rs2281986	C	T	1050.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.461e+00;DB;DP=24;ExcessHet=1.5490;FS=2.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.63;ReadPosRankSum=-8.310e-01;SOR=0.361;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:869,72,0
chr1	165386650	rs190800	G	T	1084.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=6.666;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr1	165406087	rs455696	G	A	221.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=-6.740e-01;SOR=1.863;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:71,0,69
chr1	165406187	rs79627842	T	C	175.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-1.465e+00;SOR=1.085;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:184,0,135
chr1	165406243	rs77182452	C	T	604.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.273;SOR=0.565;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:613,0,431
chr1	165406313	rs77875554	T	G	976.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462e+00;DB;DP=82;ExcessHet=3.0103;FS=2.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-5.710e-01;SOR=0.428;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,42:82:99:985,0,1068
chr1	165513439	rs285446	A	C	194.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
chr1	165513456	rs285445	A	T	389.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=0;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.83;ReadPosRankSum=0.144;SOR=0.399;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,0:0:12:136,12,0
chr1	165513463	rs285444	C	G	622.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.531e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=0.312;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:240,21,0
chr1	165532746	rs17407838	T	A	1573.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=152;ExcessHet=3.0103;FS=4.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=0.787;SOR=0.411;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,67:152:99:1582,0,2149
chr1	165533075	rs6676948	C	T	1374.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DB;DP=107;ExcessHet=3.0103;FS=0.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-1.408e+00;SOR=0.849;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,57:107:99:1383,0,1157
chr1	165601215	rs4147595	G	C	1759.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.63;SOR=5.235;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
chr1	165601566	rs9333379	T	C	1552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040e+00;DB;DP=32;ExcessHet=6.9897;FS=1.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-3.120e-01;SOR=0.473;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,20:32:99:537,0,287
chr1	165619424	rs9333468	G	T	1407.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=3.797;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:407,30,0
chr1	165621129	rs10642555	C	CAAAAAA,CAAAAAAA	1242.57	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.53;POSITIVE_TRAIN_SITE;QD=24.95;SOR=2.049;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,5,1:6:1:431,36,1,104,0,70
chr1	165621322	rs77176546	TATTATC	T	2767.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=51;ExcessHet=6.9897;FS=1.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=-8.040e-01;SOR=0.582;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,27:51:99:1062,0,1934
chr1	165624799	rs8133	G	T	2547.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.67;ReadPosRankSum=-1.270e+00;SOR=0.766;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:213,0,314
chr1	165630372	rs7554409	T	G	829.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=3.816;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:254,18,0
chr1	165630475	rs7544840	C	T	4833.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.43;SOR=2.919;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1399,126,0
chr1	165630495	rs7511691	T	C	6270.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=2.381;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1754,153,0
chr1	165630698	rs6667681	A	G	6988.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=2.189;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1845,171,0
chr1	165630784	rs11458950	C	CA	416.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.546;SOR=1.765;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:66:66,0,144
chr1	165634425	rs3820362	C	G	3337.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.537e+00;DB;DP=39;ExcessHet=3.0103;FS=0.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=-1.485e+00;SOR=0.980;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:382,0,694
chr1	165636749	rs2176151	A	G	1479.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.000e-03;DB;DP=12;ExcessHet=3.0103;FS=15.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.17;ReadPosRankSum=-4.870e-01;SOR=4.228;VQSLOD=11.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:123,0,264
chr1	165648480	rs6662419	A	G	783.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.27;ReadPosRankSum=0.00;SOR=3.816;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:149,0,65
chr1	165648559	rs4646897	T	G	2987.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970e-01;DB;DP=30;ExcessHet=3.0103;FS=3.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=-1.249e+00;SOR=0.260;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:519,0,313
chr1	165648709	rs1143661	C	T	1173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-02;DB;DP=108;ExcessHet=3.0103;FS=1.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.315;SOR=0.887;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,49:108:99:1182,0,1481
chr1	165648886	rs4646896	G	A	3432.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=37;ExcessHet=3.0103;FS=2.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.78;ReadPosRankSum=1.13;SOR=1.085;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,14:37:99:0|1:165648886_G_A:519,0,1459:165648886
chr1	165648894	rs4646895	C	G	3258.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=36;ExcessHet=3.0103;FS=2.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.26;ReadPosRankSum=1.19;SOR=1.133;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,14:36:99:0|1:165648886_G_A:522,0,1420:165648886
chr1	165649467	rs139558109	GAC	G	449.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=-1.282e+00;SOR=3.611;VQSLOD=4.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:29:163,0,29
chr1	165667412	rs41267568	G	T	137.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=-1.282e+00;SOR=1.981;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:146,0,29
chr1	165667980	rs4646881	C	T	224.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=-1.368e+00;SOR=0.399;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:70:70,0,155
chr1	165721223	rs7512095	T	C	1815.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=12;ExcessHet=3.0103;FS=5.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.02;ReadPosRankSum=0.258;SOR=3.300;VQSLOD=17.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:469,36,0
chr1	165721489	.	AT	A	279.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e-01;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.56;MQRankSum=0.00;QD=5.18;ReadPosRankSum=-6.670e-01;SOR=0.922;VQSLOD=5.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:13:35:87,0,35
chr1	165723726	rs72699931	T	C	273.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.126;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:94:94,0,105
chr1	165723770	rs10800155	A	G	537.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.14;SOR=5.283;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr1	165727274	rs368377165	CTCT	C	5290.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=72;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=-2.870e-01;SOR=0.644;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,37:72:99:1442,0,1587
chr1	165737704	rs2790053	C	G	8002.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=1.013;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2453,227,0
chr1	165859630	rs477033	C	G	14104.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.022;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4304,395,0
chr1	165865300	rs4656465	G	A	200.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649e+00;DB;DP=15;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-5.730e-01;SOR=0.086;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:209,0,314
chr1	165865478	rs11553301	G	A	914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539e+00;DB;DP=99;ExcessHet=3.0103;FS=1.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-2.920e-01;SOR=0.900;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,40:99:99:923,0,1585
chr1	165865694	rs2241965	G	A	1241.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=1.66;SOR=1.436;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:245,0,230
chr1	166029970	rs4353067	T	C	3543.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=68;ExcessHet=1.5490;FS=4.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=-1.170e-01;SOR=1.148;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2360,204,0
chr1	166030079	rs10655378	A	AAG	2054.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.32;SOR=5.464;VQSLOD=6.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:302,21,0
chr1	166124134	rs896402	A	G	10305.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=1.379;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3620,333,0
chr1	166591043	rs530513	T	C	2394.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.490e-01;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.71;ReadPosRankSum=-5.590e-01;SOR=1.759;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,30:31:51:1014,51,0
chr1	166593683	rs496095	G	A	292.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.51;SOR=4.615;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:145,12,0
chr1	166826655	rs6675033	C	T	475.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr1	166826773	rs6675153	C	T	3015.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.120e-01;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=0.440;SOR=0.719;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1308,111,0
chr1	166827224	rs6675750	G	A	1023.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=0.307;SOR=0.839;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,14:15:2:528,2,0
chr1	166827674	rs6691431	T	C	623.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=0.319;SOR=1.270;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0
chr1	166829320	rs3215444	C	CT	348.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.129;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.586;SOR=0.551;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr1	166831404	rs2075947	A	C	1344.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=1.51;SOR=0.384;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:647,48,0
chr1	166831703	rs35181816	C	CA	3032.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.156;DB;DP=49;ExcessHet=3.9794;FS=1.526;MQ=60.00;MQRankSum=0.00;QD=18.96;ReadPosRankSum=0.282;SOR=0.532;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1643,147,0
chr1	166831872	rs760537	G	A	322.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.894;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=0.319;SOR=1.329;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	166833199	rs2272793	C	A	2943.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.360e-01;DB;DP=54;ExcessHet=3.9794;FS=1.728;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-9.500e-02;SOR=0.839;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1657,162,0
chr1	166845122	rs6427038	C	G	512.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=3;ExcessHet=3.9794;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-7.550e-01;SOR=2.964;VQSLOD=18.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr1	166925806	rs2075981	A	C	693.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.91;ReadPosRankSum=0.712;SOR=2.925;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:41:481,41,0
chr1	166944256	rs59211434	TTC	T	385.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=0.549;SOR=0.269;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:42:288,0,42
chr1	166944273	rs67253020	T	A	850.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890e-01;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=1.18;SOR=0.643;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:0,7:7:39:261,0,39
chr1	166958601	rs2296837	T	C	5634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=279;ExcessHet=3.9794;FS=1.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.946;SOR=0.812;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:149,130:279:99:3181,0,3640
chr1	166958710	rs11578336	T	G	4435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=179;ExcessHet=3.9794;FS=1.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.822;SOR=0.615;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,96:179:99:2553,0,2124
chr1	166958937	rs41269702	G	T	1124.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=0.209;SOR=0.613;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:588,0,407
chr1	166961857	rs7511933	G	A	217.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.467e+00;SOR=0.425;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:226,0,381
chr1	166963234	rs3736988	T	C	722.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=85;ExcessHet=3.0103;FS=5.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.50;ReadPosRankSum=2.09;SOR=1.387;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,31:85:99:731,0,1199
chr1	166974420	rs1041238	T	C	1217.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=64;ExcessHet=3.0103;FS=2.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=-5.410e-01;SOR=1.009;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,40:64:99:1226,0,634
chr1	167042762	rs2274531	C	T	631.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DB;DP=47;ExcessHet=3.0103;FS=1.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.596;SOR=0.478;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:640,0,652
chr1	167059336	rs2281964	C	T	748.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=5.892;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:765,54,0
chr1	167059462	rs2281963	G	C	4696.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.310e-01;DB;DP=114;ExcessHet=1.5490;FS=0.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=0.233;SOR=0.749;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3462,342,0
chr1	167059575	rs28384507	G	T	2861.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=1.489;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2878,282,0
chr1	167059760	rs2281962	A	G	181.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=3.611;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr1	167082869	rs12122365	G	A	3236.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.370e-01;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=1.55;SOR=0.681;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1849,165,0
chr1	167094889	rs34184501	GA	G	3164.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.78;ReadPosRankSum=0.555;SOR=0.984;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1157,87,0
chr1	167095163	rs267745	G	C	11650.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.539e+00;DB;DP=122;ExcessHet=3.0103;FS=2.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.42;ReadPosRankSum=-1.936e+00;SOR=0.597;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4011,366,0
chr1	167096931	rs267746	A	C	3686.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=137;ExcessHet=3.9794;FS=0.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.588;SOR=0.617;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,58:137:99:1585,0,2222
chr1	167097567	rs61748784	G	A	4986.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349e+00;DB;DP=116;ExcessHet=6.9897;FS=3.414;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.402;SOR=0.544;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,61:116:99:1643,0,1574
chr1	167097739	rs2281959	C	A	1669.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241e+00;DB;DP=65;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=0.295;SOR=0.683;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,26:65:99:655,0,1074
chr1	167097945	rs267747	G	A	356.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.69;ReadPosRankSum=1.09;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:200,0,469
chr1	167098062	rs3834066	C	CT	132.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=-1.006e+00;SOR=1.022;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:140,0,100
chr1	167190251	.	G	GC	211.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DP=17;ExcessHet=3.9794;FS=3.111;MQ=60.00;MQRankSum=0.00;QD=6.06;ReadPosRankSum=0.539;SOR=1.325;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:150,0,237
chr1	167272512	rs16858893	A	C	111.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:119,0,250
chr1	167339632	rs3736846	A	C	254.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.64;SOR=4.174;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:140,12,0
chr1	167345218	rs2273963	A	C	671.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.150e-01;DB;DP=19;ExcessHet=3.9794;FS=4.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.338;SOR=0.260;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:148,0,339
chr1	167353258	rs35617253	AT	A	1248.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.121e+00;DB;DP=18;ExcessHet=3.0103;FS=3.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=0.820;SOR=0.198;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:508,54,0
chr1	167356198	rs4507986	G	A	261.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.77;SOR=2.584;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	167367193	rs7524019	C	T	1310.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.830e-01;DB;DP=37;ExcessHet=6.9897;FS=2.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-1.750e-01;SOR=0.418;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,24:37:99:679,0,398
chr1	167370988	rs2273964	C	A	486.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=3.767;VQSLOD=18.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:294,24,0
chr1	167381640	rs35736613	A	AG	1192.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.24;ReadPosRankSum=0.249;SOR=3.086;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:526,39,0
chr1	167381696	rs143277551	CTTTGA	C	513.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.16;ReadPosRankSum=1.15;SOR=3.767;VQSLOD=4.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	167382374	rs10753757	A	C	3462.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.560e-01;DB;DP=46;ExcessHet=3.0103;FS=1.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=0.316;SOR=0.524;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1528,138,0
chr1	167382399	rs112044990	AGTGT	A	2366.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.820e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=-1.380e-01;SOR=0.682;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,20:20:61:901,61,0
chr1	167385178	rs35216157	G	GA	1225.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322e+00;DB;DP=42;ExcessHet=6.9897;FS=5.767;MQ=60.00;MQRankSum=0.00;QD=8.28;ReadPosRankSum=0.592;SOR=0.390;VQSLOD=4.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,15:42:99:231,0,438
chr1	167385324	.	TAA	T,TA	1229.39	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.667;DP=29;ExcessHet=3.0103;FS=5.909;MQ=59.67;MQRankSum=0.00;QD=13.81;ReadPosRankSum=0.882;SOR=0.232;VQSLOD=4.93;culprit=FS	GT:AD:DP:GQ:PL	1/2:5,10,14:29:99:439,164,273,117,0,140
chr1	167400666	rs34484379	TACCTGCACC	T	189.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=-4.140e-01;SOR=0.892;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:198,0,396
chr1	167403504	rs952962	A	G	1970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=4.575;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:491,39,0
chr1	167404078	rs3108156	G	A	4470.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=1.545;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1220,123,0
chr1	167404179	rs61806155	G	A	643.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.37;ReadPosRankSum=1.95;SOR=0.732;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:452,0,335
chr1	167407686	rs2462553	T	C	2696.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=5.580;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1162,87,0
chr1	167408073	rs2258497	C	A	2552.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.42;SOR=6.059;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1017,75,0
chr1	167408306	rs2462552	T	C	506.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=0.598;SOR=2.093;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:120,0,63
chr1	167408670	rs840016	C	T	3016.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310e+00;DB;DP=65;ExcessHet=6.9897;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.583;SOR=0.783;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,23:65:99:552,0,1401
chr1	167511595	rs41270716	A	T	1090.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.820e-01;DB;DP=33;ExcessHet=3.9794;FS=1.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=1.42;SOR=0.478;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,23:33:99:653,0,243
chr1	167515132	rs10918711	C	T	455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=0.524;SOR=0.368;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:95:95,0,180
chr1	167515272	rs7513428	T	C	5723.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=1.308;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1732,171,0
chr1	167522453	rs2995069	C	T	1455.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.08;SOR=2.200;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:569,54,0
chr1	167523004	rs12410167	G	A	545.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020e-01;DB;DP=12;ExcessHet=3.9794;FS=2.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=0.353;SOR=0.257;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,11:12:7:323,0,7
chr1	167654598	rs74586478	C	T	1751.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.610e-01;DB;DP=113;ExcessHet=3.0103;FS=0.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=-1.720e-01;SOR=0.784;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,67:113:99:1760,0,1131
chr1	167673695	rs2862866	A	C	2019.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.160e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.95;ReadPosRankSum=-8.660e-01;SOR=3.021;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,12:15:62:365,0,62
chr1	167673738	rs34762939	T	TA	2338.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=1.30;SOR=1.051;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,15:26:99:357,0,252
chr1	167778843	rs3213588	G	A	2366.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.710e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=1.54;SOR=0.965;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:283,0,456
chr1	167779865	rs74486783	A	C	2016.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=49;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=0.092;SOR=0.586;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,29:49:99:752,0,456
chr1	167792079	rs2269673	G	T	464.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.21;ReadPosRankSum=-1.282e+00;SOR=2.303;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:31:144,0,31
chr1	167793477	rs1476073	T	C	163.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=1.022;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	167793670	rs1476074	C	T	583.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=48;ExcessHet=3.0103;FS=4.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-1.064e+00;SOR=1.497;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:592,0,621
chr1	167803432	rs12069151	C	T	239.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133e+00;DB;DP=24;ExcessHet=3.0103;FS=2.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-1.522e+00;SOR=0.283;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:248,0,540
chr1	167803896	rs2863273	T	A	126.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-1.856e+00;SOR=0.527;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:135,0,172
chr1	167805439	rs7550383	G	A	4103.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=0.064;SOR=0.791;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,32:57:99:878,0,608
chr1	167806647	rs1034463	T	A	6400.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.66;SOR=2.034;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1626,157,0
chr1	167806696	rs1034464	T	C	3124.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=2.780;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1093,93,0
chr1	167806714	rs1034465	G	A	2045.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=23;ExcessHet=3.0103;FS=2.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.09;ReadPosRankSum=-5.490e-01;SOR=1.599;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:477,0,192
chr1	167814605	rs16859798	T	C	873.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.21;ReadPosRankSum=-1.350e-01;SOR=0.914;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:68:68,0,175
chr1	167815167	rs2269678	T	C	877.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=67;ExcessHet=3.0103;FS=2.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.260e-01;SOR=0.978;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,30:67:99:886,0,1025
chr1	167815610	rs2269679	C	A	825.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=3.352;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:842,69,0
chr1	167817639	rs203795	A	G	8277.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.56;SOR=0.895;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3177,325,0
chr1	167823512	rs3738236	T	C	3296.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=20;ExcessHet=3.0103;FS=4.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.30;ReadPosRankSum=0.755;SOR=2.584;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:631,60,0
chr1	167825485	rs2071921	T	C	5671.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050e+00;DB;DP=89;ExcessHet=3.0103;FS=1.277;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=-2.100e-02;SOR=0.809;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,43:89:99:929,0,1214
chr1	167825718	rs7537851	C	T	171.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380e-01;DB;DP=14;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.19;SOR=0.061;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:180,0,221
chr1	167871297	rs71735758	GA	G	32.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=56;ExcessHet=3.0103;FS=1.356;MQ=59.89;MQRankSum=0.459;QD=0.58;ReadPosRankSum=1.14;SOR=0.850;VQSLOD=0.144;culprit=QD	GT:AD:DP:GQ:PL	0/1:48,8:56:41:41,0,1078
chr1	167873320	.	CTTT	C	116.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.80;MQRankSum=0.00;QD=8.34;ReadPosRankSum=0.842;SOR=0.593;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:61:61,0,120
chr1	167906239	rs203788	A	C	4474.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.74;SOR=1.228;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1050,96,0
chr1	167988529	rs6700210	A	G	1187.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=16;ExcessHet=3.0103;FS=8.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=0.057;SOR=5.283;VQSLOD=12.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:349,0,153
chr1	168013850	rs11558511	T	C	1572.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.11;SOR=0.762;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1589,173,0
chr1	168025409	rs3977722	A	G	307.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=9;ExcessHet=4.7712;FS=2.077;MQ=55.89;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=-8.120e-01;SOR=0.235;VQSLOD=-2.353e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:60:60,0,349
chr1	168025538	rs3977723	T	C	476.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=8;ExcessHet=3.0103;FS=9.031;MQ=56.07;MQRankSum=0.854;NEGATIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=0.921;SOR=1.414;VQSLOD=-1.579e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:56:163,0,56
chr1	168025577	rs7535741	C	T	184.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=9;ExcessHet=1.5490;FS=2.808;MQ=53.14;MQRankSum=1.28;NEGATIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-7.320e-01;SOR=0.991;VQSLOD=-2.676e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:64:150,0,64
chr1	168025664	rs7535844	C	A	56.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=3.680;MQ=50.57;MQRankSum=-1.465e+00;NEGATIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-1.068e+00;SOR=2.258;VQSLOD=-2.710e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,150
chr1	168035104	rs380095	G	C	1659.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.45;SOR=3.816;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:449,39,0
chr1	168106716	rs6664903	T	C	14527.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=2.028;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4270,384,0
chr1	168165767	rs35234155	CT	C	39.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=1.06;ReadPosRankSum=-5.200e-01;SOR=0.495;VQSLOD=6.51;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,6:37:48:48,0,702
chr1	168200733	rs11588504	T	C	2585.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-02;DB;DP=40;ExcessHet=1.5490;FS=1.349;MQ=60.00;MQRankSum=0.00;QD=27.51;ReadPosRankSum=-1.533e+00;SOR=1.185;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,26:40:99:726,0,356
chr1	168206118	rs55947108	GTTTAA	G	1053.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=-3.300e-01;SOR=1.022;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:309,0,600
chr1	168208308	rs12142742	T	C	6071.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=1.037;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2494,240,0
chr1	168218725	rs182231271	C	T	538.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.83;ReadPosRankSum=1.28;SOR=0.826;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:547,0,396
chr1	168260725	rs76187324	A	G	635.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=1.03;SOR=0.821;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:396,0,399
chr1	168262289	rs7543224	A	G	3128.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=2.660;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:81:1|1:168262289_A_G:1131,81,0:168262289
chr1	168262299	rs7520743	C	T	2038.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=31;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=0.434;SOR=0.739;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,20:31:99:0|1:168262289_A_G:557,0,253:168262289
chr1	168262522	.	A	AGTGT	873.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=1.27;SOR=0.631;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,7:17:99:0|1:168262522_A_AGTGT:228,0,364:168262522
chr1	168262527	rs12096093	G	T	216.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=23;ExcessHet=4.7712;FS=1.273;MQ=60.00;MQRankSum=0.00;QD=4.17;ReadPosRankSum=2.27;SOR=0.446;VQSLOD=20.36;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,8:23:99:1|0:168262522_A_AGTGT:224,0,487:168262522
chr1	168262624	rs10800350	A	G	545.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=2.985;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	168266901	rs78189582	G	A	827.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.701e+00;DB;DP=76;ExcessHet=3.0103;FS=3.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=1.35;SOR=0.530;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,39:76:99:836,0,1063
chr1	168269930	rs4656578	G	A	191.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=3.912;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr1	168274201	rs4656579	G	A	4856.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=1.056;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2151,209,0
chr1	168278264	rs1883148	G	A	1832.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.00;SOR=0.762;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:431,0,442
chr1	168511325	rs4301615	G	C	2639.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=93;ExcessHet=6.9897;FS=1.229;MQ=55.33;MQRankSum=-7.335e+00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-2.786e+00;SOR=0.796;VQSLOD=-3.734e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,47:93:99:0|1:168511321_C_T:1829,0,2577:168511321
chr1	168545692	rs35735040	CT	C	371.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=4;ExcessHet=3.9794;FS=2.706;MQ=57.78;MQRankSum=0.00;QD=15.50;ReadPosRankSum=0.430;SOR=0.269;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:9:42,0,9
chr1	168545758	rs28433337	C	T	2156.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.78;DB;DP=18;ExcessHet=3.0103;FS=5.012;MQ=58.00;MQRankSum=1.95;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=1.54;SOR=0.125;VQSLOD=-5.517e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,17:18:28:629,28,0
chr1	168545949	rs34933908	G	A	11463.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.048e+00;DB;DP=170;ExcessHet=3.0103;FS=0.000;MQ=58.39;MQRankSum=-3.734e+00;NEGATIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=1.35;SOR=0.656;VQSLOD=-1.612e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,170:170:99:4880,507,0
chr1	168546028	rs143444344	A	G	1557.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.263;SOR=0.722;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,61:112:99:1566,0,1161
chr1	168549422	rs6427130	C	T	12297.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=192;ExcessHet=3.9794;FS=1.249;MQ=58.90;MQRankSum=10.33;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=3.18;SOR=0.790;VQSLOD=-4.546e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,192:192:99:5676,573,0
chr1	168550535	rs79981832	A	G	898.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=4.091;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:915,72,0
chr1	168665747	rs78760104	C	CT	2170.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=52;ExcessHet=6.9897;FS=3.761;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-3.880e-01;SOR=1.001;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,17:52:99:528,0,1258
chr1	168665974	rs524705	T	C	811.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=0.00;SOR=1.473;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:277,0,134
chr1	168670140	rs113747482	TGTGTGG	T	1251.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DB;DP=19;ExcessHet=6.9897;FS=4.754;MQ=59.83;MQRankSum=0.00;QD=15.08;ReadPosRankSum=0.726;SOR=1.539;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:268,0,648
chr1	168698173	rs1052591	C	T	4291.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475e+00;DB;DP=116;ExcessHet=6.9897;FS=1.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=1.14;SOR=0.811;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,52:116:99:1289,0,1720
chr1	169076212	rs1200128	G	C	2758.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.909e+00;DB;DP=71;ExcessHet=1.5490;FS=5.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=-1.125e+00;SOR=0.257;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2103,213,0
chr1	169079805	.	CT	C	402.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294e+00;DP=9;ExcessHet=6.9897;FS=3.444;MQ=59.45;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.428;SOR=0.242;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:50:50,0,55
chr1	169080837	rs1200138	C	T	1210.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=16;ExcessHet=3.9794;FS=3.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=1.13;SOR=1.532;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:204,0,324
chr1	169094100	rs968304	T	A	2032.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=64;ExcessHet=3.9794;FS=1.343;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=5.000e-03;SOR=0.550;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:785,0,887
chr1	169094459	rs1892094	C	T	269.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.652;SOR=0.392;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:127,0,350
chr1	169099037	rs10919070	A	C	527.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210e-01;DB;DP=16;ExcessHet=3.9794;FS=1.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.668;SOR=0.324;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:169099037_A_C:351,0,452:169099037
chr1	169099061	rs1200157	G	A	882.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.588e+00;DB;DP=26;ExcessHet=3.9794;FS=7.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=0.130;SOR=0.148;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,15:26:99:0|1:169099037_A_C:489,0,567:169099037
chr1	169099483	rs10919071	A	G	370.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.9794;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.253;SOR=2.303;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:102,0,63
chr1	169101273	rs1779796	T	G	3315.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=64;ExcessHet=3.9794;FS=4.056;MQ=59.95;MQRankSum=1.24;QD=23.02;ReadPosRankSum=1.45;SOR=1.006;VQSLOD=0.472;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,38:64:99:0|1:169101269_T_TG:1428,0,1063:169101269
chr1	169159866	rs7526721	G	T	731.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=-2.510e-01;SOR=0.752;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,20:51:99:433,0,836
chr1	169216412	rs2040445	C	G	1875.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.19;SOR=4.133;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:626,54,0
chr1	169272299	rs10919130	A	T	896.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=60;ExcessHet=3.9794;FS=2.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=0.222;SOR=1.016;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:652,0,701
chr1	169272451	rs10800427	A	T	2560.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=4.029;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:169272451_A_T:495,33,0:169272451
chr1	169272453	rs10800428	G	A	2560.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=3.952;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:169272451_A_T:495,33,0:169272451
chr1	169279181	rs200103104	C	T	953.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DB;DP=59;ExcessHet=3.0103;FS=1.174;MQ=60.00;MQRankSum=0.00;QD=16.16;ReadPosRankSum=-1.435e+00;SOR=0.446;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,37:59:99:962,0,546
chr1	169279196	rs34054662	T	TA	1857.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385e+00;DB;DP=68;ExcessHet=3.9794;FS=2.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.800;SOR=0.498;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,42:68:99:1087,0,585
chr1	169293721	rs1140523	G	A	1415.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;DB;DP=40;ExcessHet=3.9794;FS=0.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.266;SOR=0.555;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,30:40:99:801,0,209
chr1	169345704	rs12563090	G	A	1384.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295e+00;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-7.920e-01;SOR=0.781;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:567,0,839
chr1	169347813	rs150391978	A	T	1249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DB;DP=101;ExcessHet=3.0103;FS=16.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-2.210e-01;SOR=0.134;VQSLOD=12.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,53:101:99:1258,0,1189
chr1	169349608	rs3830533	C	CTA	592.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.67;ReadPosRankSum=1.72;SOR=1.270;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:198,0,163
chr1	169351596	rs3905328	A	G	673.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=22;ExcessHet=3.9794;FS=1.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-4.950e-01;SOR=0.976;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:319,0,265
chr1	169391154	rs3820059	A	G	1943.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DB;DP=84;ExcessHet=3.9794;FS=0.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=1.31;SOR=0.782;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,49:84:99:1155,0,845
chr1	169394226	rs10919168	A	G	1526.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.09;DB;DP=57;ExcessHet=3.9794;FS=5.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-2.960e-01;SOR=1.260;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,18:57:99:518,0,972
chr1	169435027	rs2678166	C	T	1615.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.13;SOR=3.209;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:513,42,0
chr1	169455435	rs2056926	G	C	1698.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230e-01;DB;DP=136;ExcessHet=3.0103;FS=2.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.240;SOR=0.906;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,65:136:99:1707,0,1907
chr1	169483561	rs6027	T	C	511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-5.340e-01;SOR=0.704;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:520,0,605
chr1	169483762	rs2227243	T	G	154.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.03;SOR=1.371;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:163,0,218
chr1	169484442	rs3835452	CT	C	63.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.60;ReadPosRankSum=0.385;SOR=0.693;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:69:72,0,69
chr1	169484552	rs3820060	T	G	2543.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=18;ExcessHet=3.0103;FS=4.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.92;ReadPosRankSum=-1.557e+00;SOR=2.001;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:367,0,209
chr1	169487821	rs6013	G	T	1136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;DB;DP=83;ExcessHet=3.0103;FS=0.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.165;SOR=0.588;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1145,0,824
chr1	169489489	rs9332659	C	G	149.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.380e-01;SOR=1.179;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:158,0,183
chr1	169493895	rs9332639	A	G	208.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.961e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-1.323e+00;SOR=0.892;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:217,0,342
chr1	169494196	rs2301515	C	T	1400.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DB;DP=14;ExcessHet=3.0103;FS=3.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=0.192;SOR=1.655;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:129,0,242
chr1	169498834	rs6009	T	C	3636.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=2.663;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:631,60,0
chr1	169498975	rs6030	T	C	7631.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=68;ExcessHet=3.0103;FS=0.653;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=-1.885e+00;SOR=0.592;VQSLOD=6.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,31:68:99:820,0,941
chr1	169499190	rs2157581	A	G	982.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.949e+00;DB;DP=13;ExcessHet=3.0103;FS=3.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.91;ReadPosRankSum=-9.260e-01;SOR=2.448;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:153,0,272
chr1	169505557	rs58033656	CT	C	751.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.78;ReadPosRankSum=-6.970e-01;SOR=3.611;VQSLOD=3.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:70:70,0,84
chr1	169509483	rs9332609	T	G	1071.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=65;ExcessHet=3.0103;FS=1.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-7.880e-01;SOR=0.512;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1080,0,773
chr1	169510348	rs1800595	T	C	4686.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e+00;DB;DP=384;ExcessHet=3.0103;FS=0.769;MQ=59.83;MQRankSum=0.141;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.42;SOR=0.643;VQSLOD=1.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:173,211:384:99:4695,0,6165
chr1	169510380	rs9287090	G	A	27617.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.840e-01;DB;DP=411;ExcessHet=3.0103;FS=2.301;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.40;ReadPosRankSum=0.176;SOR=0.620;VQSLOD=6.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:234,177:411:99:3916,0,8512
chr1	169510524	rs1800594	A	G	35018.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.523e+00;DB;DP=333;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=-9.900e-02;QD=32.04;ReadPosRankSum=-2.670e-01;SOR=0.268;VQSLOD=0.996;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,333:333:99:10615,997,0
chr1	169511555	rs6032	T	C	11383.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=137;ExcessHet=3.0103;FS=1.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=-8.810e-01;SOR=0.912;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,70:137:99:1891,0,1666
chr1	169511734	rs4525	T	C	13386.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=175;ExcessHet=3.0103;FS=0.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=0.270;SOR=0.633;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,74:175:99:1804,0,2526
chr1	169511755	rs4524	T	C	14013.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=168;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.06;SOR=0.656;VQSLOD=6.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,69:168:99:1741,0,2459
chr1	169511878	rs6018	T	G	1627.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-02;DB;DP=106;ExcessHet=3.0103;FS=4.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.257;SOR=0.384;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,62:106:99:1636,0,1072
chr1	169512027	rs6021	T	C	7019.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.790e-01;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=0.238;SOR=0.657;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,38:92:99:926,0,1534
chr1	169512039	rs6024	T	C	1558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.526;SOR=0.667;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,55:94:99:1567,0,988
chr1	169512093	rs6017	A	G	8372.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.520e-01;DB;DP=101;ExcessHet=3.0103;FS=1.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=-5.070e-01;SOR=0.798;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,40:101:99:999,0,1781
chr1	169512120	rs6016	G	A	8411.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724e+00;DB;DP=106;ExcessHet=3.0103;FS=2.373;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.52;ReadPosRankSum=-6.760e-01;SOR=0.685;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,43:106:99:1032,0,1763
chr1	169512497	rs2239851	C	A	2670.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.360e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.41;ReadPosRankSum=-4.650e-01;SOR=0.642;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:540,0,323
chr1	169512524	rs2239852	C	T	2481.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.676e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.23;ReadPosRankSum=0.263;SOR=1.559;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:62:689,62,0
chr1	169512562	rs6675244	T	C	1403.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-6.740e-01;SOR=4.235;VQSLOD=13.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:26:201,0,26
chr1	169512594	rs6662593	G	A	760.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=-5.240e-01;SOR=4.615;VQSLOD=14.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:146,0,28
chr1	169512643	rs6686805	A	C	560.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.85;SOR=5.421;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:11:1|1:169512643_A_C:140,11,0:169512643
chr1	169512651	rs6662696	G	A	530.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=5.283;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:11:1|1:169512643_A_C:140,11,0:169512643
chr1	169513436	rs9287092	C	A	2336.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.750e-01;DB;DP=26;ExcessHet=3.0103;FS=1.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=0.580;SOR=0.361;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:380,0,291
chr1	169513583	rs6037	G	T	914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e+00;DB;DP=65;ExcessHet=3.0103;FS=2.070;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.133;SOR=0.861;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,38:65:99:923,0,774
chr1	169515536	rs6672595	C	T	446.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=1.04;SOR=1.493;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:139,0,103
chr1	169515726	rs6036	C	T	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=54;ExcessHet=3.0103;FS=1.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.45;ReadPosRankSum=0.459;SOR=0.914;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,18:54:99:465,0,882
chr1	169515874	rs13306345	T	A	956.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=16;ExcessHet=3.9794;FS=3.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.36;ReadPosRankSum=-4.220e-01;SOR=1.445;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:155,0,300
chr1	169515916	rs13306344	G	A	550.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.9794;FS=3.358;MQ=60.00;MQRankSum=0.00;QD=28.99;ReadPosRankSum=0.792;SOR=1.981;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,1:7:24:0|1:169515916_G_A:24,0,307:169515916
chr1	169515936	rs79186925	T	C	518.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=0.674;SOR=1.085;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:67:0|1:169515916_G_A:67,0,203:169515916
chr1	169518872	rs55717622	CA	C,CAA	719.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.253;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=-1.834e+00;SOR=3.321;VQSLOD=4.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,3,5:10:32:133,82,157,32,0,85
chr1	169519049	rs6025	T	C	12044.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.054;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2579,228,0
chr1	169519894	rs6015	G	A	684.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=59;ExcessHet=3.0103;FS=3.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-1.070e-01;SOR=1.193;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,26:59:99:693,0,732
chr1	169520098	rs10800456	A	G	399.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=-1.036e+00;SOR=2.833;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr1	169521853	rs6033	A	G	629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679e+00;DB;DP=50;ExcessHet=3.0103;FS=4.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-1.379e+00;SOR=0.307;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:638,0,581
chr1	169525766	rs2239853	T	C	1188.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DB;DP=26;ExcessHet=1.5490;FS=9.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=1.81;SOR=2.546;VQSLOD=16.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:226,0,538
chr1	169525808	rs2239854	G	A	980.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.098;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-2.770e-01;SOR=0.776;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,12:44:99:278,0,943
chr1	169551682	rs6028	T	C	693.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.760e-01;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.757;SOR=0.806;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:702,0,488
chr1	169560727	rs35706397	T	TA	1376.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;DB;DP=45;ExcessHet=3.9794;FS=9.121;MQ=60.00;MQRankSum=0.00;QD=16.78;ReadPosRankSum=0.751;SOR=0.213;VQSLOD=3.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,22:45:99:445,0,441
chr1	169563951	rs6136	T	G	1267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=0.717;SOR=0.638;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,52:85:99:1276,0,708
chr1	169564167	rs742127	G	C	107.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:116,0,67
chr1	169565565	rs2205896	T	G	326.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.431;SOR=0.610;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,146
chr1	169566313	rs6127	C	T	6651.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440e-01;DB;DP=93;ExcessHet=3.9794;FS=0.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.51;ReadPosRankSum=2.61;SOR=0.788;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,42:93:99:946,0,1232
chr1	169572545	rs201543202	CTGTGTGTG	C	1256.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-01;DB;DP=10;ExcessHet=3.9794;FS=2.089;MQ=59.38;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.377;SOR=1.414;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,5:10:99:0|1:169572545_CTGTGTGTG_C:195,0,238:169572545
chr1	169572555	rs201923719	G	C	900.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=9;ExcessHet=3.9794;FS=2.869;MQ=60.00;MQRankSum=0.00;QD=24.33;ReadPosRankSum=1.28;SOR=0.214;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:169572545_CTGTGTGTG_C:195,0,238:169572545
chr1	169572557	rs199963384	G	C	903.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=9;ExcessHet=3.9794;FS=2.915;MQ=60.00;MQRankSum=0.00;QD=25.09;ReadPosRankSum=-1.268e+00;SOR=0.197;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:169572545_CTGTGTGTG_C:198,0,196:169572545
chr1	169572645	rs2205895	C	T	235.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:74:98,0,74
chr1	169576568	rs3917751	G	A	174.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.319;SOR=1.863;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:105,0,31
chr1	169578586	rs2076074	G	A	134.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.39;ReadPosRankSum=-4.310e-01;SOR=1.329;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:56:143,0,56
chr1	169580717	rs3917731	T	C	670.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;DB;DP=21;ExcessHet=3.9794;FS=2.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-1.092e+00;SOR=0.399;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:245,0,254
chr1	169580972	rs3917730	C	CAT	687.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=-1.240e-01;SOR=1.017;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:359,0,240
chr1	169599254	rs732314	T	C	1817.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DB;DP=74;ExcessHet=3.9794;FS=1.266;MQ=59.90;MQRankSum=1.24;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.191;SOR=0.554;VQSLOD=2.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,44:74:99:1174,0,837
chr1	169660781	rs12938	A	G	2024.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294e+00;DB;DP=66;ExcessHet=3.9794;FS=5.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-1.970e-01;SOR=1.131;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,44:66:99:1124,0,512
chr1	169665551	rs4987358	G	T	1312.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.220e-01;DB;DP=46;ExcessHet=3.9794;FS=0.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.521;SOR=0.564;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:506,0,719
chr1	169665632	rs2223286	T	C	1631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=1.24;SOR=0.704;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:480,0,629
chr1	169672343	rs4987314	C	T	480.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=15;ExcessHet=3.9794;FS=1.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.656;SOR=0.267;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:114,0,338
chr1	169672360	rs4987313	G	A	262.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.615;SOR=0.892;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:271,0,146
chr1	169673544	rs4987311	CA	C	48.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.26;SOR=2.303;VQSLOD=5.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
chr1	169673838	rs2229569	G	A	601.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=38;ExcessHet=3.9794;FS=4.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.33;ReadPosRankSum=1.08;SOR=0.314;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,12:38:99:252,0,668
chr1	169676293	rs2205848	G	A	318.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=4.407;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:247,18,0
chr1	169677507	rs4987288	C	G	479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.900;SOR=0.252;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,2:13:49:49,0,340
chr1	169677709	rs1051091	A	G	4726.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=156;ExcessHet=3.9794;FS=1.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=1.30;SOR=0.809;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,72:156:99:1729,0,2059
chr1	169678024	rs4987285	T	C	2292.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.559;DB;DP=43;ExcessHet=1.5490;FS=5.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=0.014;SOR=0.187;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1627,129,0
chr1	169679358	rs4987282	G	A	59.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,81
chr1	169679472	rs4987281	G	GCT	1506.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;DB;DP=40;ExcessHet=3.9794;FS=1.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=-9.760e-01;SOR=1.257;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,19:40:99:744,0,791
chr1	169679772	rs4987278	A	G	1010.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.828;SOR=0.766;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,35:72:99:1019,0,929
chr1	169694695	rs3917434	C	T	580.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=5.421;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr1	169694918	rs5356	A	G	3461.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.000e-03;DB;DP=124;ExcessHet=3.9794;FS=4.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.333;SOR=0.954;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,66:124:99:1563,0,1356
chr1	169695110	rs3917432	T	A	1474.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.82;DB;DP=25;ExcessHet=3.9794;FS=1.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=1.09;SOR=0.435;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:435,0,338
chr1	169695984	rs3917428	G	A	1938.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=73;ExcessHet=3.9794;FS=1.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=1.07;SOR=0.569;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,35:73:99:925,0,1119
chr1	169696946	rs5368	G	A	2135.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.080e-01;DB;DP=86;ExcessHet=3.9794;FS=4.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=1.61;SOR=1.101;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,40:86:99:989,0,1227
chr1	169697444	rs1076637	C	T	1561.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.779;SOR=0.627;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:646,0,483
chr1	169697591	rs1076638	T	C	140.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=-2.720e-01;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:148,0,138
chr1	169698825	rs1534904	T	G	7445.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=1.052;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3127,279,0
chr1	169699081	rs3917421	G	C	152.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=-1.282e+00;SOR=1.981;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:161,0,27
chr1	169699466	rs60426343	CA	C	1707.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.031;DB;DP=36;ExcessHet=1.5490;FS=4.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=1.35;SOR=0.268;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1013,108,0
chr1	169702278	rs3917406	A	G	309.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=0.189;SOR=0.275;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,111
chr1	169702509	rs78121884	T	C	303.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.710e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=-1.140e-01;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:311,0,169
chr1	169702705	rs932307	G	A	1613.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=72;ExcessHet=3.9794;FS=1.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=0.534;SOR=0.822;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,26:72:99:634,0,1254
chr1	169702974	rs5353	T	C	78.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=2.303;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	169764568	rs3766132	C	G	1154.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.97;SOR=1.819;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:419,42,0
chr1	169768033	rs6680938	T	C	3930.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=34.18;SOR=2.242;VQSLOD=3.45;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1753,156,0
chr1	169768080	rs6668114	C	A	5330.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=0.4576;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=32.11;SOR=1.445;VQSLOD=4.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2851,251,0
chr1	169768372	rs3766134	C	T	542.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.04;SOR=5.421;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:241,18,0
chr1	169769856	rs3062253	C	CTT	105.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=57.88;QD=26.48;SOR=3.258;VQSLOD=4.52;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:119,12,0
chr1	169773160	rs3766138	T	C	1071.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.020e-01;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-2.360e-01;SOR=0.846;VQSLOD=6.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,20:44:99:532,0,677
chr1	169773317	rs11590604	G	A	3731.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162e+00;DB;DP=137;ExcessHet=3.9794;FS=0.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=1.11;SOR=0.756;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,73:137:99:1758,0,1719
chr1	169777169	rs34657513	T	C	917.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=1.70;SOR=0.735;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:296,0,330
chr1	169792331	rs10919251	T	G	207.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=1.329;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr1	169795214	rs57068023	CT	C	1731.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.35;SOR=1.773;VQSLOD=5.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:640,66,0
chr1	169795276	rs6682137	A	C	1020.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=3.690;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:342,24,0
chr1	169798745	rs17529513	C	G	417.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.564;SOR=0.518;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:175,0,310
chr1	169800062	rs10489175	C	T	520.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=16;ExcessHet=3.9794;FS=4.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-5.400e-02;SOR=0.077;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:199,0,324
chr1	169812765	rs3062271	ATTC	A	1394.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-01;DB;DP=40;ExcessHet=3.9794;FS=4.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=1.55;SOR=1.270;VQSLOD=6.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,20:40:99:760,0,918
chr1	169818880	rs2272918	G	A	167.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-2.980e-01;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:175,0,156
chr1	169819605	rs6664099	A	G	3369.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=1.879;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1596,147,0
chr1	169823296	rs112604424	G	GCTTGA	577.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082e+00;DB;DP=12;ExcessHet=3.9794;FS=1.882;MQ=60.00;MQRankSum=0.00;QD=21.38;ReadPosRankSum=0.786;SOR=0.338;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:189,0,450
chr1	169823660	rs1062976	C	T	3178.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=103;ExcessHet=3.9794;FS=1.001;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-6.120e-01;SOR=0.793;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,56:103:99:1356,0,1113
chr1	169823718	rs4656197	T	C	8542.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=0.761;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3592,351,0
chr1	169828601	rs10753797	T	A	395.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.39;SOR=4.804;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr1	169831690	rs3062287	CTCTT	C	2082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;DB;DP=61;ExcessHet=3.9794;FS=3.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=0.609;SOR=1.033;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,25:61:99:941,0,1988
chr1	169831993	rs7525259	A	G	1678.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=2.786;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:626,57,0
chr1	169833822	rs1883436	T	C	1446.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=2.833;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:696,60,0
chr1	169835950	rs12133843	A	C	529.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.30;SOR=2.833;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr1	169838278	rs17603022	G	A	1117.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DB;DP=35;ExcessHet=3.9794;FS=3.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-9.580e-01;SOR=1.261;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:579,0,430
chr1	169847683	rs6683056	G	A	576.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.57;SOR=5.549;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr1	169890574	rs4519	T	A	689.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=5.784;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr1	169890933	rs518928	A	G	7219.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=1.487;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2677,267,0
chr1	169891056	rs3838393	CT	C	1017.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.27;SOR=3.383;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:401,42,0
chr1	169930005	rs3215641	G	GA	152.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.47;SOR=3.912;VQSLOD=5.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr1	169930049	rs542570	C	T	1174.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.00;SOR=6.439;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:24:1|1:169930049_C_T:350,24,0:169930049
chr1	169930051	rs615485	T	C	1174.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.35;SOR=6.593;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:169930049_C_T:350,24,0:169930049
chr1	169941761	rs511443	A	T	1599.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=2.400;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:257,24,0
chr1	169946953	rs850771	A	G	240.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.40;SOR=4.174;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:105,9,0
chr1	169947146	rs11396984	C	CA	3447.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=-1.321e+00;SOR=1.048;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,33:40:35:841,35,0
chr1	169950991	.	A	G	65.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.32;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:74,0,71
chr1	169951748	rs638486	A	G	1077.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=5.421;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:275,24,0
chr1	169952385	rs2057249	G	T	2034.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.89;SOR=4.575;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:462,39,0
chr1	170115156	rs550297	G	A	2692.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=0.158;SOR=0.712;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:483,0,355
chr1	170120831	rs535709	C	T	301.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=4.407;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	170135510	rs576572	T	C	1588.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=54.57;QD=31.47;SOR=5.994;VQSLOD=3.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:368,27,0
chr1	170135828	rs41272487	C	T	901.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.960e-01;DB;DP=75;ExcessHet=3.0103;FS=6.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-1.395e+00;SOR=1.505;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:910,0,1130
chr1	170136787	rs12075997	C	T	1279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=153;ExcessHet=3.0103;FS=2.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=-7.960e-01;SOR=0.971;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,58:153:99:1288,0,2352
chr1	170501385	rs7531125	A	C	13285.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=180;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.54;ReadPosRankSum=0.665;SOR=0.543;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5500,539,0
chr1	170501521	rs112197426	AC	A	2768.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=96;ExcessHet=3.9794;FS=3.655;MQ=60.00;MQRankSum=0.00;QD=18.58;ReadPosRankSum=0.559;SOR=0.411;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1688,0,1598
chr1	170502517	rs1412892	A	G	567.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.14;SOR=5.283;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr1	170511604	rs7538037	T	C	915.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DB;DP=23;ExcessHet=3.9794;FS=2.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=0.935;SOR=1.302;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:373,0,286
chr1	170521376	rs913257	G	A	523.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DB;DP=56;ExcessHet=3.0103;FS=2.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-1.896e+00;SOR=0.399;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,22:56:99:532,0,944
chr1	170521650	rs7552922	T	G	712.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=24;ExcessHet=3.9794;FS=3.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.44;SOR=1.652;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:317,0,340
chr1	170633066	rs645196	C	G	165.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.02;SOR=1.022;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	170633111	rs564020	T	G	435.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=27.99;SOR=2.093;VQSLOD=4.78;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:15:1|1:170633111_T_G:225,15,0:170633111
chr1	170633119	rs563991	T	G	435.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=29.82;SOR=1.609;VQSLOD=4.92;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:170633111_T_G:225,15,0:170633111
chr1	170633142	rs645617	C	G	479.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.67;POSITIVE_TRAIN_SITE;QD=30.50;SOR=2.494;VQSLOD=4.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:170633111_T_G:269,18,0:170633111
chr1	170633173	rs563216	A	G	616.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.77;QD=32.95;SOR=2.049;VQSLOD=4.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:194,18,0
chr1	170633186	rs11286665	A	AT	506.32	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.210;DB;DP=6;ExcessHet=3.0103;FS=6.021;MQ=58.49;MQRankSum=-4.310e-01;POSITIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=-2.100e-01;SOR=2.350;VQSLOD=0.482;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,3:6:6:89,6,0
chr1	170633248	.	C	CTCTCT	63.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=12.66;ReadPosRankSum=0.674;SOR=0.061;VQSLOD=5.44;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:72:0|1:170633248_C_CTCTCT:72,0,162:170633248
chr1	170633250	.	A	T	64.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=10.75;ReadPosRankSum=0.967;SOR=0.039;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:72:0|1:170633248_C_CTCTCT:72,0,162:170633248
chr1	170633252	.	TAC	T	64.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=10.75;ReadPosRankSum=-2.530e-01;SOR=0.039;VQSLOD=5.14;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:72:0|1:170633248_C_CTCTCT:72,0,162:170633248
chr1	170633256	.	C	T	57.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=9.54;SOR=0.039;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:66:0|1:170633248_C_CTCTCT:66,0,246:170633248
chr1	170633258	.	C	T	57.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.18;ReadPosRankSum=-5.660e-01;SOR=0.368;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,1:7:66:0|1:170633248_C_CTCTCT:66,0,246:170633248
chr1	170916646	rs4656817	G	T	3233.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=127;ExcessHet=3.9794;FS=2.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.342;SOR=0.537;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,57:127:99:1259,0,1721
chr1	170927570	rs374865486	CT	C	869.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DB;DP=95;ExcessHet=3.9794;FS=0.540;MQ=59.92;MQRankSum=0.00;QD=4.60;ReadPosRankSum=3.17;SOR=0.767;VQSLOD=4.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:76,15:95:42:42,0,2287
chr1	170927572	rs35425940	T	TC	2422.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=112;ExcessHet=3.9794;FS=0.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=2.54;SOR=0.647;VQSLOD=6.40;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:80,32:112:99:411,0,2407
chr1	170928671	rs2294740	T	C	5640.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980e-01;DB;DP=120;ExcessHet=1.5490;FS=5.110;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=0.095;SOR=0.576;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,58:120:99:1390,0,1553
chr1	170928973	rs2294741	T	C	2599.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.96;ReadPosRankSum=-5.220e-01;SOR=0.587;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:659,0,380
chr1	170958912	.	A	G	1311.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.96;ReadPosRankSum=0.261;SOR=0.581;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,45:73:99:1320,0,747
chr1	170993444	rs3077629	G	GGT	1216.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=23.85;ReadPosRankSum=1.19;SOR=1.463;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:156,0,190
chr1	171061990	rs2064074	A	G	2711.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DB;DP=69;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.00;SOR=0.728;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:984,0,904
chr1	171069959	rs12076145	A	G	46.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:55:55,0,143
chr1	171076966	rs2266782	G	A	3876.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.239e+00;DB;DP=76;ExcessHet=6.9897;FS=0.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.500;SOR=0.642;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,46:76:99:1065,0,680
chr1	171077198	rs1920149	G	A	4000.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268e+00;DB;DP=128;ExcessHet=6.9897;FS=0.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.393;SOR=0.669;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,59:128:99:1321,0,1823
chr1	171077372	rs2066534	C	G	3014.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=94;ExcessHet=6.9897;FS=6.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-1.054e+00;SOR=1.071;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,42:94:99:1103,0,1394
chr1	171112490	rs1736565	C	T	1330.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376e+00;DB;DP=35;ExcessHet=6.9897;FS=0.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-8.870e-01;SOR=0.851;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,12:35:99:314,0,798
chr1	171112621	rs9663011	C	G	253.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=-1.890e-01;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:103,0,114
chr1	171120956	rs7882954	C	G	1049.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=0.474;SOR=0.729;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:260,0,253
chr1	171123432	rs182955300	A	C	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;DB;DP=41;ExcessHet=3.0103;FS=1.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-1.523e+00;SOR=0.435;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:660,0,408
chr1	171130346	rs16864125	G	A	5224.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479e+00;DB;DP=184;ExcessHet=3.9794;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.980;SOR=0.766;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,96:184:99:2376,0,2274
chr1	171130539	rs72714112	G	C	2734.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=85;ExcessHet=3.9794;FS=10.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=1.34;SOR=1.423;VQSLOD=18.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,47:85:99:1484,0,1076
chr1	171130598	rs145126383	CACACA	C	2310.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441e+00;DB;DP=35;ExcessHet=6.9897;FS=2.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.438;SOR=1.011;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,20:35:99:765,0,758
chr1	171155103	rs6657314	C	T	1275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.921e+00;DB;DP=27;ExcessHet=6.9897;FS=7.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-9.550e-01;SOR=1.828;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:393,0,413
chr1	171162438	rs28969551	C	T	922.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DB;DP=26;ExcessHet=3.9794;FS=2.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=1.09;SOR=1.163;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:210,0,443
chr1	171162551	rs2020868	T	TGAC	2678.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=56;ExcessHet=3.9794;FS=4.372;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=0.518;SOR=0.625;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,26:56:99:1001,0,1391
chr1	171162583	rs2020860	T	C	1631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=51;ExcessHet=3.9794;FS=0.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=0.510;SOR=0.814;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:555,0,649
chr1	171165802	rs28369860	TG	T	1247.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=47;ExcessHet=3.9794;FS=1.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=1.41;SOR=0.442;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,22:47:99:743,0,851
chr1	171168302	rs2205723	G	C	366.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=6;ExcessHet=6.9897;FS=3.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.189;SOR=0.129;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:112,0,113
chr1	171168584	rs2020862	C	T	2911.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-01;DB;DP=59;ExcessHet=6.9897;FS=2.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-1.500e+00;SOR=0.933;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,29:59:99:0|1:171168584_C_T:1104,0,1662:171168584
chr1	171168585	rs2020861	A	G	2911.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=59;ExcessHet=6.9897;FS=2.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-2.002e+00;SOR=0.916;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,29:59:99:0|1:171168584_C_T:1104,0,1662:171168584
chr1	171176912	rs2020865	T	G	1464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=61;ExcessHet=3.9794;FS=0.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.30;SOR=0.767;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,34:61:99:814,0,659
chr1	171227216	rs10912675	T	C	4237.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=101;ExcessHet=6.9897;FS=0.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-8.070e-01;SOR=0.662;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,55:101:99:1349,0,1240
chr1	171227487	rs12141555	A	G	2913.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=47;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-2.990e-01;SOR=0.677;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:588,0,662
chr1	171244806	rs12730181	C	A	250.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.140;SOR=0.307;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:95:95,0,199
chr1	171250044	rs742350	C	T	2623.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=72;ExcessHet=6.9897;FS=0.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-3.130e-01;SOR=0.636;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,30:72:99:682,0,1002
chr1	171251509	rs12091482	G	T	1239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=32;ExcessHet=6.9897;FS=2.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-7.660e-01;SOR=1.065;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,11:32:99:304,0,679
chr1	171251663	rs10399952	A	G	245.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=-4.310e-01;SOR=1.270;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:109,0,70
chr1	171252287	rs1126692	A	G	1995.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DB;DP=47;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.884;SOR=0.690;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:581,0,500
chr1	171254297	.	GT	G	143.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.51;ReadPosRankSum=-2.117e+00;SOR=0.527;VQSLOD=4.65;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,7:22:99:152,0,400
chr1	171481592	rs2038042	G	A	111.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.80;SOR=2.833;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	171486369	rs72717818	C	T	154.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=1.981;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr1	171487092	rs80115932	TG	T	462.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.676e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=-6.840e-01;SOR=0.569;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr1	171491264	rs3736679	T	A	1602.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.942e+00;DB;DP=22;ExcessHet=3.9794;FS=3.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=-1.100e-02;SOR=0.346;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:657,66,0
chr1	171496752	rs10913176	A	G	238.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=-2.410e-01;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	171496895	rs10753126	A	G	1474.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=28;ExcessHet=3.9794;FS=2.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=0.579;SOR=0.435;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:883,83,0
chr1	171506261	rs2272809	A	G	553.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=2.88;SOR=1.721;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr1	171509058	rs2015996	G	A	636.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.89;DB;DP=7;ExcessHet=3.9794;FS=6.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=0.00;SOR=2.742;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr1	171509327	rs760644	G	A	4354.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.764;DB;DP=87;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=2.17;SOR=0.716;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2595,261,0
chr1	171511039	rs1687064	C	G	2810.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.960;SOR=0.674;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1230,120,0
chr1	171511442	rs2272810	A	G	1487.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=23;ExcessHet=3.9794;FS=3.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=0.248;SOR=1.341;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:793,69,0
chr1	171514731	rs235468	C	G	1198.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.120;DB;DP=21;ExcessHet=3.9794;FS=4.262;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=1.71;SOR=0.280;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:669,63,0
chr1	171519128	rs11358319	GT	G	340.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.800e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.464;SOR=3.056;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:123,15,0
chr1	171519487	rs235470	A	C	1116.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.359e+00;DB;DP=11;ExcessHet=3.9794;FS=2.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.381;SOR=1.054;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:348,33,0
chr1	171526570	rs1687057	G	A	11667.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=183;ExcessHet=3.9794;FS=0.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-7.280e-01;SOR=0.734;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,183:183:99:5889,549,0
chr1	171526910	rs12025905	G	A	3385.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.44;SOR=0.859;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3402,342,0
chr1	171527322	rs235482	A	G	1850.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.200e-01;DB;DP=23;ExcessHet=3.9794;FS=1.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=-2.120e-01;SOR=1.402;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:809,69,0
chr1	171535180	rs1626990	C	T	596.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.42;ReadPosRankSum=-1.350e-01;SOR=2.200;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr1	171536106	rs11580526	G	A	88.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.02;ReadPosRankSum=0.091;SOR=0.283;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:97:97,0,232
chr1	171546833	rs6685179	C	A	2369.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.495;DB;DP=31;ExcessHet=3.9794;FS=3.253;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=-5.470e-01;SOR=1.173;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:92:1072,92,0
chr1	171546911	rs377281015	T	TAA	83.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:42:91,0,42
chr1	171546912	rs28569034	T	A	35.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.99;ReadPosRankSum=-4.310e-01;SOR=0.307;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:42:0|1:171546912_T_A:42,0,91:171546912
chr1	171546913	rs6693043	T	A	35.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.99;ReadPosRankSum=-4.310e-01;SOR=0.307;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:42:0|1:171546912_T_A:42,0,91:171546912
chr1	171548617	rs3817772	G	A	4492.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=1.163;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4509,440,0
chr1	171548868	rs235489	T	C	2086.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.815;DB;DP=31;ExcessHet=3.9794;FS=0.926;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=1.13;SOR=0.542;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1076,93,0
chr1	171553851	rs235496	C	T	190.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=3.611;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	171556165	rs235501	G	C	9338.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DB;DP=174;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.490;SOR=0.702;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5039,519,0
chr1	171557762	rs72717849	G	T	63.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=-9.670e-01;SOR=0.693;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:72,0,67
chr1	171558447	.	GT	G	293.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DP=16;ExcessHet=6.9897;FS=4.782;MQ=59.73;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.39;ReadPosRankSum=1.04;SOR=1.594;VQSLOD=6.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:16:38:134,0,38
chr1	171558516	rs235503	C	T	3714.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.162;DB;DP=51;ExcessHet=3.9794;FS=8.282;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=-3.140e-01;SOR=1.352;VQSLOD=5.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1798,153,0
chr1	171606054	rs12076134	T	G	365.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=0.842;SOR=1.765;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:316,24,0
chr1	171607702	rs2032555	C	T	3341.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.84;SOR=0.844;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1529,153,0
chr1	171750774	rs2294717	C	T	224.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.183e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=58.95;MQRankSum=-6.740e-01;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.621;SOR=0.693;VQSLOD=1.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:233,0,251
chr1	171751051	rs2294719	A	G	3257.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=113;ExcessHet=3.9794;FS=2.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=1.31;SOR=0.530;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,53:113:99:1338,0,1680
chr1	171751236	rs2294720	T	C	808.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.578;SOR=0.621;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:476,0,638
chr1	171753039	rs2232816	A	G	1401.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.550e-01;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.197;SOR=0.756;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,57:110:99:1410,0,1253
chr1	171754799	rs732305	G	A	262.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-8.160e-01;SOR=0.693;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:136,0,117
chr1	171754865	rs732304	A	G	795.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=22;ExcessHet=3.9794;FS=1.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=-3.360e-01;SOR=1.308;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:419,0,277
chr1	171755170	rs2232818	G	A	938.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=69;ExcessHet=3.0103;FS=5.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-8.170e-01;SOR=0.302;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:947,0,872
chr1	171763522	rs909958	C	A	713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297e+00;DB;DP=52;ExcessHet=3.0103;FS=4.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.15;SOR=0.267;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:722,0,638
chr1	171765591	rs2232826	G	A	1337.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.110e-01;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.532;SOR=0.717;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,52:114:99:1346,0,1741
chr1	171810960	rs12239702	A	G	703.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=-1.350e-01;SOR=0.551;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:200,0,329
chr1	171891263	rs56072056	T	TTGTG	147.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.80;SOR=3.258;VQSLOD=2.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	172038079	rs12760234	T	C	1590.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-8.560e-01;SOR=0.762;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,39:65:99:1047,0,688
chr1	172222629	rs139551857	TCTCTCCTCTCCTCTCCTCTC	T,TCTCTC	1504.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.04;ReadPosRankSum=1.59;SOR=1.508;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,6:12:99:492,254,418,239,0,219
chr1	172292205	rs6694387	T	C	74.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=2.303;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	172307678	rs17368942	T	C	155.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.040e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=0.154;SOR=0.836;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:164,0,263
chr1	172308238	rs6697844	C	T	1345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=1.36;SOR=0.662;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,53:98:99:1354,0,1100
chr1	172356437	rs6688654	A	G	4084.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.33;SOR=2.021;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1485,147,0
chr1	172356582	rs2269612	G	A	547.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=3.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.42;ReadPosRankSum=-5.240e-01;SOR=2.368;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,76
chr1	172376809	rs9425600	T	C	1910.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496e+00;DB;DP=49;ExcessHet=1.5490;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=0.120;SOR=0.494;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:674,0,665
chr1	172399346	rs200979934	TAA	T	1769.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=50;ExcessHet=3.9794;FS=2.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,18:50:99:660,0,1392
chr1	172411496	rs2230471	A	G	3309.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.390e-01;DB;DP=33;ExcessHet=3.0103;FS=6.060;MQ=59.84;MQRankSum=-7.970e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=0.675;SOR=0.695;VQSLOD=1.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,19:33:99:525,0,437
chr1	172411768	rs13932	T	C	3118.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=126;ExcessHet=3.9794;FS=1.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.916;SOR=0.610;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,66:126:99:1590,0,1653
chr1	172417781	rs2157451	A	G	1207.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=0.325;SOR=0.495;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:246,0,128
chr1	172422209	rs2285175	C	T	1396.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DB;DP=51;ExcessHet=3.9794;FS=4.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.68;SOR=1.182;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:696,0,594
chr1	172422649	rs929098	A	G	302.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=0.825;SOR=0.804;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:94:180,0,94
chr1	172431210	rs4916261	G	A	2230.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.641e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=0.821;SOR=0.856;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:302,0,471
chr1	172434375	rs2901655	G	A	4074.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.686e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.35;ReadPosRankSum=-1.620e+00;SOR=0.565;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:562,0,267
chr1	172434812	rs2901656	C	T	2942.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=61;ExcessHet=3.9794;FS=4.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=0.315;SOR=1.054;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,20:61:99:478,0,1027
chr1	172437592	rs1129942	G	A	5044.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380e-01;DB;DP=66;ExcessHet=3.0103;FS=0.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=-1.800e-01;SOR=0.800;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,33:66:99:889,0,854
chr1	172501643	rs2239816	T	C	6248.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.192;DB;DP=106;ExcessHet=3.9794;FS=5.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=0.047;SOR=0.476;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3197,318,0
chr1	172502041	rs10798043	A	G	961.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.49;SOR=3.442;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:214,18,0
chr1	172502340	rs2285143	T	C	2481.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.300e-02;DB;DP=45;ExcessHet=3.9794;FS=1.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=1.46;SOR=0.912;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1362,135,0
chr1	172502479	rs2285144	T	C	3874.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.776;DB;DP=72;ExcessHet=3.9794;FS=0.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=2.47;SOR=0.771;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2416,216,0
chr1	172502727	rs55696309	TA	T	5201.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;DB;DP=80;ExcessHet=3.9794;FS=5.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=2.93;SOR=1.060;VQSLOD=5.66;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,80:80:99:3210,241,0
chr1	172522602	rs1159378	G	A	742.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.831;DB;DP=13;ExcessHet=3.9794;FS=5.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=-3.980e-01;SOR=0.102;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:452,39,0
chr1	172524788	rs2239817	T	A	201.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=-1.383e+00;SOR=1.863;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:149,12,0
chr1	172539442	rs3752515	A	G	249	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.20;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=-1.500e-01;SOR=0.495;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	172544967	rs56928843	GT	G	205.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.470e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-7.320e-01;SOR=0.976;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:155,15,0
chr1	172547134	rs3214152	T	TA	200.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-3.450e-01;SOR=0.976;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:84,9,0
chr1	172547465	rs2285664	A	G	4001.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.938;DB;DP=53;ExcessHet=3.9794;FS=1.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=0.157;SOR=0.816;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1564,159,0
chr1	172554867	rs10752995	T	A	1343.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.489e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.17;ReadPosRankSum=0.186;SOR=1.382;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:801,60,0
chr1	172559323	rs3738736	A	G	178	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.67;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr1	172560287	rs113070747	A	C	561.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=1.12;SOR=0.622;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:570,0,558
chr1	172571568	rs3830150	A	G	449.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=3;ExcessHet=3.9794;FS=7.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=0.272;SOR=2.670;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr1	172577795	rs111441187	G	A	302.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=21;ExcessHet=3.0103;FS=4.419;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=2.04;SOR=1.897;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:311,0,212
chr1	172633350	rs5030772	A	G	180.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=-1.437e+00;SOR=0.892;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:189,0,131
chr1	172634734	rs2639653	T	C	7656.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.49;SOR=0.786;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1948,174,0
chr1	173490407	rs5778771	TA	T	249.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=20;ExcessHet=6.9897;FS=9.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.46;ReadPosRankSum=0.517;SOR=2.283;VQSLOD=3.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,2:20:20:20,0,289
chr1	173550784	.	C	A	69.51	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.76;SOR=2.303;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	173556699	rs301698	G	T	948.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=3.098;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:356,27,0
chr1	173795803	.	CT	C	319.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DP=31;ExcessHet=6.9897;FS=8.376;MQ=59.98;MQRankSum=0.00;QD=2.73;ReadPosRankSum=0.774;SOR=0.254;VQSLOD=3.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,7:31:75:75,0,480
chr1	173819421	rs201467171	C	CA	293.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DB;DP=12;ExcessHet=3.9794;FS=3.291;MQ=60.00;MQRankSum=0.00;QD=9.16;ReadPosRankSum=-3.930e-01;SOR=1.911;VQSLOD=5.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,2:12:13:13,0,196
chr1	173819743	.	CT	C	128.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.98;ReadPosRankSum=0.765;SOR=0.765;VQSLOD=6.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:99:100,0,157
chr1	173834332	.	TA	T	196.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.96;ReadPosRankSum=0.455;SOR=0.565;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:14:77:77,0,155
chr1	173837091	rs79315403	A	G	243.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870e-01;DB;DP=16;ExcessHet=3.0103;FS=2.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-1.863e+00;SOR=0.223;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:252,0,207
chr1	173839907	rs36119794	C	T	2846.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=0.972;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2863,260,0
chr1	173941617	rs11579488	T	C	1229.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=117;ExcessHet=3.0103;FS=3.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=1.07;SOR=0.390;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,50:117:99:1238,0,1758
chr1	173961839	rs12754931	G	C	991.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e+00;DB;DP=30;ExcessHet=1.5490;FS=11.725;MQ=60.00;MQRankSum=0.00;QD=15.73;ReadPosRankSum=-2.775e+00;SOR=0.091;VQSLOD=15.00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,29:30:99:1751,176,0
chr1	174417231	rs7516240	G	A	9175.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=1.564;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3218,338,0
chr1	174926860	.	CTT	C,CT	1006.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.30;DP=38;ExcessHet=3.9794;FS=0.000;MQ=59.30;MQRankSum=0.00;QD=13.60;ReadPosRankSum=0.453;SOR=0.807;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,11,15:38:99:570,190,228,219,0,178
chr1	174927388	rs10798329	G	C	3622.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.70;SOR=4.247;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:894,69,0
chr1	174945171	rs142125254	CTGTATGACTGTGA	C	1100.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.03;SOR=1.136;VQSLOD=4.32;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,25:25:76:1117,76,0
chr1	174969271	rs1046439	C	T	12575.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.594;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=0.880;SOR=0.582;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4445,411,0
chr1	174978103	rs1984418	G	A	527.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.22;ReadPosRankSum=0.967;SOR=3.912;VQSLOD=15.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr1	174984073	rs201408977	TC	*,T	81.44	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.643;DB;DP=25;ExcessHet=0.4576;FS=1.306;MQ=59.43;MQRankSum=1.37;QD=1.70;ReadPosRankSum=1.14;SOR=0.430;VQSLOD=0.115;culprit=QD	GT:AD:DP:GQ:PL	1/2:1,20,4:25:17:701,51,17,509,0,468
chr1	175046488	rs2072033	G	A	947.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DB;DP=85;ExcessHet=3.0103;FS=2.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.762;SOR=0.460;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,40:85:99:956,0,1208
chr1	175046789	rs2072032	A	G	2757.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-01;DB;DP=207;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-2.300e+00;SOR=0.714;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,111:207:99:2766,0,2314
chr1	175053098	rs11577778	T	C	3170.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DB;DP=162;ExcessHet=3.0103;FS=4.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.204;SOR=1.096;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:79,83:162:99:0|1:175053098_T_C:3179,0,4109:175053098
chr1	175053101	rs2072030	A	T	3170.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=158;ExcessHet=3.0103;FS=4.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=0.473;SOR=1.037;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:77,81:158:99:0|1:175053098_T_C:3179,0,4109:175053098
chr1	175054418	rs1573759	A	G	46.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.61;ReadPosRankSum=0.366;SOR=0.223;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:55:55,0,182
chr1	175054548	rs1573758	C	T	915.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=67;ExcessHet=3.0103;FS=1.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-4.330e-01;SOR=0.962;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,33:67:99:924,0,873
chr1	175063571	rs12068982	A	G	201.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=0.992;SOR=1.402;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:210,0,100
chr1	175068011	rs744008	T	A	97.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=1.65;SOR=1.022;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:106,0,62
chr1	175086461	rs6690229	A	G	2947.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.143e+00;DB;DP=38;ExcessHet=1.5490;FS=2.327;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.08;ReadPosRankSum=-1.124e+00;SOR=0.350;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,22:38:99:615,0,539
chr1	175087606	rs10912888	T	C	703.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273e+00;DB;DP=49;ExcessHet=3.0103;FS=1.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-2.551e+00;SOR=1.056;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:712,0,729
chr1	175087677	rs6656284	G	A	1629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.328e+00;DB;DP=142;ExcessHet=3.0103;FS=3.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=1.23;SOR=0.454;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,70:142:99:1638,0,2022
chr1	175087683	rs149150350	A	AT	1619.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.197e+00;DB;DP=145;ExcessHet=3.0103;FS=3.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.599;SOR=0.457;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,74:145:99:1628,0,1567
chr1	175087729	rs6696455	T	C	2233.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.407e+00;DB;DP=168;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-1.665e+00;SOR=0.710;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,91:168:99:2242,0,1934
chr1	175092674	rs2285215	C	T	4320.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=127;ExcessHet=3.9794;FS=5.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.903;SOR=1.015;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,62:127:99:1797,0,1635
chr1	175092840	rs2072041	T	C	5628.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=179;ExcessHet=3.9794;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.209;SOR=0.628;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,89:179:99:2375,0,2063
chr1	175092992	rs10568684	GGAGT	G	2411.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=2.670;VQSLOD=6.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1125,75,0
chr1	175096333	rs2072040	A	G	3599.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.28;SOR=3.890;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1721,147,0
chr1	175096389	rs10798334	C	T	1937.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.85;SOR=6.358;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:750,54,0
chr1	175097331	rs10912891	G	A	2054.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DB;DP=98;ExcessHet=3.9794;FS=6.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=2.10;SOR=1.137;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,42:98:99:980,0,1405
chr1	175097349	rs7547567	C	T	2261.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=87;ExcessHet=3.9794;FS=1.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.068;SOR=0.593;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,49:87:99:1286,0,1450
chr1	175097357	rs2269652	C	G	1937.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.266;DB;DP=84;ExcessHet=3.9794;FS=0.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=1.26;SOR=0.615;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,35:84:99:825,0,1948
chr1	175097864	rs12022593	G	A	3402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=139;ExcessHet=3.9794;FS=5.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-2.090e-01;SOR=1.027;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,71:139:99:1695,0,1574
chr1	175097991	rs10798335	C	T	1246.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223e+00;DB;DP=33;ExcessHet=3.9794;FS=2.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-1.080e-01;SOR=0.362;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:541,0,551
chr1	175104790	rs4651323	T	C	439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-1.410e-01;SOR=0.970;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,6:18:99:0|1:175104790_T_C:154,0,399:175104790
chr1	175104796	rs4651324	G	T	2020.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.97;SOR=2.584;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:175104790_T_C:827,63,0:175104790
chr1	175105778	rs2072038	T	C	348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.770e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=-4.570e-01;SOR=0.307;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,12:14:36:357,0,36
chr1	175105880	rs2072037	G	A	2294.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842e+00;DB;DP=44;ExcessHet=3.9794;FS=1.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=0.079;SOR=0.511;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:389,0,889
chr1	175105942	rs4650703	G	A	6341.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=0.996;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2358,240,0
chr1	175105996	rs2072036	C	T	885.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DB;DP=86;ExcessHet=3.0103;FS=4.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=0.234;SOR=0.728;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,40:86:99:894,0,1090
chr1	175113578	rs10912897	T	C	7939.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.183e+00;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=-1.000e+00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=1.91;SOR=0.698;VQSLOD=1.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1069,0,1245
chr1	175116046	rs11450833	C	CT	1584.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e-01;DB;DP=48;ExcessHet=6.9897;FS=1.932;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.828;SOR=0.885;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,15:48:99:222,0,588
chr1	175116252	rs4651335	C	G	1939.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=19;ExcessHet=3.0103;FS=2.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=0.723;SOR=1.250;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,17:19:8:589,8,0
chr1	175129945	rs60195884	TC	T	2176.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DB;DP=46;ExcessHet=6.9897;FS=0.663;MQ=60.00;MQRankSum=0.00;QD=14.81;ReadPosRankSum=0.019;SOR=0.793;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,19:46:99:0|1:175129945_TC_T:687,0,2945:175129945
chr1	175129947	.	TTCTTCTTG	T	2162.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490e-01;DP=50;ExcessHet=6.9897;FS=1.377;MQ=60.00;MQRankSum=0.00;QD=13.78;ReadPosRankSum=0.382;SOR=0.871;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,20:50:99:0|1:175129945_TC_T:684,0,2967:175129945
chr1	175130204	rs1057239	G	A	1568.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-02;DB;DP=49;ExcessHet=6.9897;FS=8.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.118;SOR=1.506;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,18:49:99:501,0,897
chr1	175130276	rs1135289	G	A	2066.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.548e+00;DB;DP=21;ExcessHet=3.0103;FS=3.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.71;ReadPosRankSum=1.07;SOR=1.473;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:238,0,375
chr1	175293424	rs2213635	T	C	1658.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=9;ExcessHet=3.0103;FS=5.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.53;ReadPosRankSum=1.08;SOR=3.702;VQSLOD=15.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:326,27,0
chr1	175299301	rs2027867	T	C	10607.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.800e-01;DB;DP=135;ExcessHet=3.0103;FS=1.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.92;ReadPosRankSum=1.84;SOR=0.614;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4459,405,0
chr1	175323386	rs10912966	G	A	253.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.980e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=-3.850e-01;SOR=1.609;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr1	175323446	rs2301432	A	G	2342.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.88;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.95;ReadPosRankSum=1.10;SOR=1.408;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:529,39,0
chr1	175324518	rs55715761	GCA	G	7632.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=44;ExcessHet=3.0103;FS=6.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.48;ReadPosRankSum=-3.920e-01;SOR=0.254;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:175324518_GCA_G:2005,135,0:175324518
chr1	175324521	rs55973835	A	T	7632.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.070e-01;DB;DP=45;ExcessHet=3.0103;FS=4.550;MQ=60.00;MQRankSum=0.00;QD=27.54;ReadPosRankSum=-3.100e-02;SOR=0.338;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:175324518_GCA_G:2005,135,0:175324518
chr1	175329083	rs2239820	A	T	660.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=2.531;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:331,33,0
chr1	175335412	rs1385540	A	C	2924.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.519;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.50;ReadPosRankSum=-1.701e+00;SOR=0.941;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1150,84,0
chr1	175336185	rs16848304	G	C	295.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.710e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=0.936;SOR=1.329;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr1	175348462	rs859425	T	G	1098.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.05;SOR=5.486;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:181,15,0
chr1	175348543	rs859426	T	C	4112.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=34.27;SOR=2.342;VQSLOD=2.76;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1155,105,0
chr1	175348723	rs859427	C	T	11662.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=0.896;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3295,312,0
chr1	175355128	rs859436	C	G	7567.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.500e-01;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.78;ReadPosRankSum=-5.620e-01;SOR=0.976;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,73:74:99:2282,180,0
chr1	175355391	rs859437	A	G	9620.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.60;SOR=1.946;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3064,252,0
chr1	175355618	rs859438	T	C	1941.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.858;DB;DP=27;ExcessHet=3.0103;FS=1.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=1.44;SOR=1.091;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:962,81,0
chr1	175360690	rs859444	C	T	4048.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.19;DB;DP=38;ExcessHet=3.0103;FS=1.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.17;ReadPosRankSum=-1.341e+00;SOR=0.974;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1290,114,0
chr1	175362638	rs10912968	G	A	178.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=-1.036e+00;SOR=1.179;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	175362736	rs3752517	G	A	1518.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=17;ExcessHet=3.0103;FS=6.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.31;ReadPosRankSum=0.966;SOR=2.025;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:585,51,0
chr1	175363204	rs12023965	C	T	553.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.362e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.063;SOR=0.826;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr1	175363227	rs12042417	T	A	451.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.013e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr1	175365663	rs859446	G	A	5867.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.98;DB;DP=103;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-2.290e-01;SOR=0.684;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3100,306,0
chr1	175375334	rs859400	C	T	3139.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.316e+00;DB;DP=39;ExcessHet=3.9794;FS=0.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.565;SOR=0.546;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1396,117,0
chr1	175375683	rs859399	T	C	17365.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.999e+00;DB;DP=213;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=-8.010e-01;SOR=0.708;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,213:213:99:6784,639,0
chr1	175375802	rs859398	T	C	19473.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.178e+00;DB;DP=281;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.16;ReadPosRankSum=0.250;SOR=0.727;VQSLOD=6.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,281:281:99:8310,843,0
chr1	175376019	rs60974501	AG	A	2165.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.860e-01;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=-9.670e-01;SOR=2.737;VQSLOD=6.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:946,93,0
chr1	175911397	rs10436864	T	C	656.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.57;ReadPosRankSum=0.00;SOR=2.200;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:263,18,0
chr1	175914531	rs7522442	A	G	655.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=5.670;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	175916267	rs6674353	T	C	15052.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.06;SOR=0.838;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4154,383,0
chr1	175916506	rs34272809	AT	A	234.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.640e-01;DB;DP=18;ExcessHet=6.9897;FS=3.551;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.98;ReadPosRankSum=1.24;SOR=1.477;VQSLOD=6.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,8:18:99:117,0,163
chr1	175937315	rs7545043	T	G	819.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.52;ReadPosRankSum=0.241;SOR=2.303;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr1	175937540	rs4534339	C	T	7514.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=0.861;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2155,212,0
chr1	175951347	rs10798430	T	A	7400.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=0.879;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2407,243,0
chr1	175955649	rs16849486	C	T	349.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.50;ReadPosRankSum=-1.292e+00;SOR=0.892;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:115,0,63
chr1	175955688	rs141197532	TCTCC	T	568.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=0.773;SOR=0.582;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,156
chr1	175955734	rs9783047	T	A	1649.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.099;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.13;ReadPosRankSum=0.858;SOR=2.833;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:700,54,0
chr1	175997035	rs10712525	TA	T	288.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=1.15;SOR=3.912;VQSLOD=4.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:89,12,0
chr1	176012807	rs4233165	G	A	2630.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=2.073;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:680,63,0
chr1	176050138	rs2502828	G	A	803.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=5.994;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr1	176050430	rs56720201	GA	G	558.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DB;DP=31;ExcessHet=6.9897;FS=2.736;MQ=59.99;MQRankSum=0.00;QD=4.62;ReadPosRankSum=0.581;SOR=1.008;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:31:99:185,0,335
chr1	176050676	rs2481647	A	T	69.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=2.303;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	176102974	rs2481662	T	C	2100.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.720e-01;DB;DP=50;ExcessHet=6.9897;FS=1.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-8.080e-01;SOR=0.597;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,32:50:99:799,0,409
chr1	176103053	rs34010407	TAC	T	2196.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=0.907;SOR=0.739;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,27:52:99:1037,0,930
chr1	176103954	rs2502845	C	T	1144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.460e-01;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-1.031e+00;SOR=0.674;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:406,0,413
chr1	176118219	rs3748618	G	A	1138.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DB;DP=47;ExcessHet=3.9794;FS=2.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=1.36;SOR=0.964;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:514,0,630
chr1	176129276	rs520661	G	A	3792.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.720e-01;DB;DP=68;ExcessHet=6.9897;FS=0.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.341;SOR=0.748;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,26:68:99:599,0,1005
chr1	176129391	.	CTT	C	519.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.560e-01;DP=6;ExcessHet=3.9794;FS=10.786;MQ=59.77;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-2.530e-01;SOR=2.673;VQSLOD=3.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,3:6:48:71,0,48
chr1	176132292	rs704828	C	T	4467.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=1.851;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:946,84,0
chr1	176145277	rs471534	T	C	674.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.84;ReadPosRankSum=-9.670e-01;SOR=4.407;VQSLOD=13.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:258,18,0
chr1	176153658	rs791744	T	C	1730.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=1.08;SOR=1.054;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:530,48,0
chr1	176665102	.	ATGTG	ATG,A	726	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.13;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.11;ReadPosRankSum=1.67;SOR=0.770;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,4,5:9:84:310,145,118,99,0,84
chr1	176671912	rs371785478	TGA	T	227.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=20;ExcessHet=6.9897;FS=7.778;MQ=58.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.74;ReadPosRankSum=0.506;SOR=2.704;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,4:20:48:48,0,473
chr1	176759336	rs2076336	A	G	203.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=1.38;SOR=0.859;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:68,0,63
chr1	176760806	rs6425396	C	T	153.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.00;SOR=0.551;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:57:57,0,202
chr1	176837817	rs12025402	A	G	106.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.75;SOR=2.833;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	176845386	rs2076339	C	T	461.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.82;SOR=1.609;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:478,48,0
chr1	176845410	rs2076340	G	C	2140.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.332e+00;DB;DP=21;ExcessHet=3.0103;FS=1.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.93;ReadPosRankSum=-1.939e+00;SOR=0.516;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:676,63,0
chr1	176845528	rs2076341	C	T	6223.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.96;SOR=1.775;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1640,146,0
chr1	176851747	rs2076337	G	A	200.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.74;SOR=3.611;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
chr1	176857347	rs2072935	A	G	6142.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.32;SOR=0.847;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1923,183,0
chr1	176857498	rs2076338	G	A	974.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=1.942;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:991,86,0
chr1	176863836	rs2281180	G	C	10260.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=0.842;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2892,279,0
chr1	176863867	rs2228956	T	C	10025.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=0.706;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3190,312,0
chr1	176913215	rs35968661	AT	A	385.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DB;DP=20;ExcessHet=6.9897;FS=3.008;MQ=59.90;MQRankSum=0.00;QD=6.89;ReadPosRankSum=-2.340e-01;SOR=1.230;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:209,0,159
chr1	176918136	rs4652208	A	C	96.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:104,0,104
chr1	176984208	rs228019	C	A	139.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=3.258;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr1	176992553	rs172917	A	G	4670.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=0.733;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4687,458,0
chr1	176992676	rs10798496	C	T	2077.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=2.129;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2094,194,0
chr1	176998368	rs10753142	T	A	180.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.73;SOR=3.611;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr1	177000203	rs6682507	C	T	228.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.09;SOR=3.912;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr1	177199323	rs3176442	C	T	2358.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DB;DP=101;ExcessHet=3.9794;FS=6.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-9.900e-01;SOR=1.172;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,53:101:99:1352,0,1281
chr1	177225400	rs2861919	G	C	299.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=0.854;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:111,0,154
chr1	177247854	rs3176443	C	G	4594.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.836e+00;DB;DP=111;ExcessHet=1.5490;FS=1.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=0.782;SOR=0.570;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3539,333,0
chr1	177898799	rs623479	C	T	128.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=-1.006e+00;SOR=0.941;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:137,0,109
chr1	177899562	rs626976	C	T	136.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:145,0,28
chr1	177901619	rs7531399	G	A	712.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.055e+00;DB;DP=69;ExcessHet=3.0103;FS=0.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=-7.220e-01;SOR=0.495;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:721,0,1031
chr1	177901655	rs3748792	G	A	1661.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377e+00;DB;DP=102;ExcessHet=3.0103;FS=6.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=0.754;SOR=0.310;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,44:102:99:0|1:177901655_G_A:1670,0,2545:177901655
chr1	177901658	rs7554597	C	T	1763.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693e+00;DB;DP=109;ExcessHet=3.0103;FS=5.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.747;SOR=0.361;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,47:109:99:0|1:177901655_G_A:1772,0,2600:177901655
chr1	177901713	rs522367	T	C	1541.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=158;ExcessHet=3.0103;FS=2.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-2.130e-01;SOR=0.481;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,66:158:99:1550,0,2238
chr1	177901741	rs684227	A	G	1295.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.130e-01;DB;DP=162;ExcessHet=3.0103;FS=3.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=0.963;SOR=0.563;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,62:162:99:1304,0,2469
chr1	177902387	rs61745560	C	A	1208.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=103;ExcessHet=3.0103;FS=6.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.768;SOR=1.354;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,45:103:99:1217,0,2269
chr1	177902388	rs3813647	G	A	2503.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=103;ExcessHet=3.9794;FS=0.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.221;SOR=0.625;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,57:103:99:1341,0,1748
chr1	177902482	rs3813648	G	A	1426.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=131;ExcessHet=3.0103;FS=3.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=0.141;SOR=0.605;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,58:131:99:1435,0,1874
chr1	177902725	rs3813649	C	T	1235.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=95;ExcessHet=3.0103;FS=6.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=1.39;SOR=0.301;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,46:95:99:1244,0,1273
chr1	177902753	rs591120	G	C	1355.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=119;ExcessHet=3.0103;FS=2.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-1.265e+00;SOR=0.505;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,56:119:99:1364,0,1538
chr1	177905469	rs7522194	C	A	875.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=68;ExcessHet=3.0103;FS=3.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-2.090e-01;SOR=1.121;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,33:68:99:884,0,845
chr1	177906292	rs61816275	C	T	95.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DB;DP=25;ExcessHet=3.0103;FS=2.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.81;ReadPosRankSum=-6.400e-02;SOR=1.483;VQSLOD=21.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,6:25:99:104,0,512
chr1	177913980	rs532842	T	C	944.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.98;SOR=4.091;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	177915474	rs842192	A	C	5334.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=1.145;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1948,180,0
chr1	177915698	rs75650660	G	A	81.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=-1.413e+00;SOR=0.180;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:90:90,0,302
chr1	177916890	.	A	AAGGGACAGGGAGGGGAGGTGAGGGG	704	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=22.35;SOR=4.615;VQSLOD=3.87;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:15:224,15,0
chr1	177917479	rs6695715	G	A	389.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-2.100e-02;SOR=0.540;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:398,0,448
chr1	177920754	rs3828137	G	A	355.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=1.28;SOR=3.258;VQSLOD=18.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:154,0,23
chr1	177921434	rs4652282	T	A	3041.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=1.31;SOR=0.649;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:352,0,398
chr1	177927654	rs16828589	C	A	53.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=-8.420e-01;SOR=0.307;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,156
chr1	177929379	rs16828594	C	T	205.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402e+00;DB;DP=16;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.020e-01;SOR=0.065;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:214,0,284
chr1	177929940	rs7413442	G	A	2021.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=55;ExcessHet=3.9794;FS=1.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=1.15;SOR=0.953;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:813,0,773
chr1	177929987	rs12040910	T	C	7725.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=83;ExcessHet=3.0103;FS=0.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=0.197;SOR=0.640;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,37:83:99:929,0,1247
chr1	177930642	rs945640	G	A	671.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.687;SOR=0.602;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,24:57:99:680,0,757
chr1	177930894	rs945641	C	T	2125.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-01;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=0.429;SOR=0.650;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,8:31:99:186,0,725
chr1	177933443	rs3813651	G	A	1775.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=150;ExcessHet=3.0103;FS=0.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-7.100e-02;SOR=0.608;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,72:150:99:1784,0,1941
chr1	177934044	rs10798587	T	C	122.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.712;SOR=0.527;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:131,0,164
chr1	177935203	rs954502	A	G	212.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=30;ExcessHet=3.0103;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=0.566;SOR=0.343;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,9:30:99:221,0,547
chr1	177935275	rs1415085	A	G	1606.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.270e-01;DB;DP=12;ExcessHet=3.0103;FS=5.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.90;ReadPosRankSum=-3.910e-01;SOR=2.257;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:193,0,139
chr1	178062359	rs964993	G	A	5752.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=122;ExcessHet=6.9897;FS=4.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.063;SOR=0.698;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,60:122:99:1463,0,1448
chr1	178063551	rs316255	A	C	1717.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.64;SOR=6.043;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:457,33,0
chr1	178408795	rs10913550	A	G	829.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=16;ExcessHet=6.9897;FS=4.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-1.033e+00;SOR=0.169;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:208,0,270
chr1	178410425	rs9803679	T	C	319.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=-6.520e-01;SOR=0.836;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:71:0|1:178410425_T_C:81,0,71:178410425
chr1	178410442	rs72482621	C	T	356.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=1.38;SOR=1.244;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:178410425_T_C:78,0,105:178410425
chr1	178421901	rs12691482	T	G	2156.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767e+00;DB;DP=67;ExcessHet=6.9897;FS=5.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.032;SOR=0.418;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,28:67:99:655,0,1016
chr1	178433200	rs6699087	G	T	306.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=0.524;SOR=0.602;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:75:103,0,75
chr1	178433368	rs12039605	C	T	936.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=49;ExcessHet=3.9794;FS=1.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-5.520e-01;SOR=0.468;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,24:49:99:607,0,604
chr1	178436678	rs10913556	C	T	405.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.890e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.914;SOR=1.609;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:215,18,0
chr1	178442031	rs6688185	C	T	2213.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.560e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.09;ReadPosRankSum=0.082;SOR=1.255;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:689,54,0
chr1	178442190	rs10913557	C	T	2774.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531e+00;DB;DP=107;ExcessHet=3.9794;FS=1.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-1.850e-01;SOR=0.840;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,45:107:99:1091,0,1723
chr1	178494428	rs6664493	C	T	716.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=28;ExcessHet=3.9794;FS=1.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=0.876;SOR=0.395;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:383,0,449
chr1	178499068	rs6675811	T	A	669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=33;ExcessHet=3.9794;FS=1.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=2.28;SOR=0.432;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,9:33:99:205,0,717
chr1	178513895	rs10798615	T	G	479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=18;ExcessHet=3.9794;FS=4.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=1.69;SOR=0.141;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:264,0,309
chr1	178514165	rs12141152	C	T	1266.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=1.52;SOR=0.664;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,27:64:99:684,0,1004
chr1	178514560	rs34632529	A	AT	2643.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=110;ExcessHet=3.9794;FS=5.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.292;SOR=0.738;VQSLOD=6.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,50:110:99:1280,0,1629
chr1	178515135	rs4650992	A	T	900.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=30;ExcessHet=3.9794;FS=5.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=2.28;SOR=1.447;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:466,0,386
chr1	178515187	rs4650993	A	G	782.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=27;ExcessHet=3.9794;FS=3.450;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.790;SOR=1.150;VQSLOD=6.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,16:27:99:459,0,311
chr1	178515312	rs4650994	G	A	171.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.380e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=0.875;SOR=0.693;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:137,0,181
chr1	178646752	rs2773075	A	C	3131.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.32;SOR=1.265;VQSLOD=18.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:882,90,0
chr1	178647084	rs71108073	CAA	CA,C	181.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.74;SOR=2.833;VQSLOD=4.91;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,2:6:34:152,51,34,87,0,81
chr1	178776985	rs6690324	G	A	614.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.13;SOR=4.174;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:215,18,0
chr1	178847940	.	G	A	165.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.02;ReadPosRankSum=-1.349e+00;SOR=0.892;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:174,0,149
chr1	178854978	.	G	C	260.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361e+00;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.02;ReadPosRankSum=-3.550e-01;SOR=1.179;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:269,0,179
chr1	178863023	rs112670005	C	T	430.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464e+00;DB;DP=37;ExcessHet=3.0103;FS=1.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-2.290e-01;SOR=0.368;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:439,0,437
chr1	179019186	rs12733622	A	G	999.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.48;ReadPosRankSum=-8.700e-02;SOR=2.910;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:787,54,0
chr1	179023879	rs12735672	T	G	458.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.18;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=-6.200e-02;SOR=1.493;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:218,18,0
chr1	179040930	rs10913689	T	C	1036.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DB;DP=29;ExcessHet=1.5490;FS=4.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=1.02;SOR=0.297;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:952,87,0
chr1	179041011	rs3820163	A	G	6124.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.75;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=-9.250e-01;SOR=0.691;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2119,191,0
chr1	179041398	rs2025584	A	G	5117.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.308e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=-3.125e+00;SOR=1.919;VQSLOD=22.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2062,150,0
chr1	179051300	rs2296377	T	C	4314.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=45;ExcessHet=3.0103;FS=1.261;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=0.585;SOR=1.118;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1750,135,0
chr1	179052006	rs2274227	G	T	5729.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.862e+00;DB;DP=126;ExcessHet=1.5490;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=-1.589e+00;SOR=0.792;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4042,378,0
chr1	179052480	rs60513555	A	ACT	738.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=0.00;SOR=3.611;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	179054692	rs912758	T	G	15156.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=200;ExcessHet=3.0103;FS=0.713;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=0.925;SOR=0.563;VQSLOD=6.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,200:200:99:6090,597,0
chr1	179057504	rs11589113	G	A	69.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.65;SOR=2.303;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	179067071	rs10913690	C	A	1415.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.068;DB;DP=7;ExcessHet=3.0103;FS=10.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.42;ReadPosRankSum=-3.280e-01;SOR=5.838;VQSLOD=12.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr1	179079190	rs3818433	T	C	426.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=5.283;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr1	179080115	.	CTTTT	C,CTT	2359.49	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.32;DP=33;ExcessHet=3.0103;FS=11.224;MQ=59.84;MQRankSum=0.00;QD=27.76;ReadPosRankSum=1.11;SOR=3.285;VQSLOD=1.28;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,10,10:33:99:759,304,495,299,0,241
chr1	179080221	rs113450962	C	T	773.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.77;ReadPosRankSum=5.000e-03;SOR=2.670;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:579,45,0
chr1	179087934	rs2171959	T	C	3978.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.293e+00;DB;DP=41;ExcessHet=3.0103;FS=4.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=1.60;SOR=0.321;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1291,123,0
chr1	179089213	rs1858551	C	T	2793.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.821e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.87;ReadPosRankSum=-2.067e+00;SOR=0.757;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1089,96,0
chr1	179089475	rs9726961	C	G	2618.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.280e-01;DB;DP=22;ExcessHet=3.0103;FS=1.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=0.455;SOR=1.230;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:787,66,0
chr1	179089491	rs9728480	A	C	2434.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.46;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=0.222;SOR=0.651;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:765,63,0
chr1	179089518	rs9727252	C	G	1352.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.256e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.77;MQRankSum=0.822;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=1.42;SOR=0.466;VQSLOD=0.771;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:486,39,0
chr1	179100291	rs2486998	T	C	112.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.31;SOR=2.833;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	179102268	rs28914510	A	T	743.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.70;SOR=3.500;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:760,54,0
chr1	179112145	rs1318056	C	G	2331.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=1.270;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2348,228,0
chr1	179198653	rs2306941	T	C	216.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=2.584;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	179307047	rs10913726	T	A	1417.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=1.203;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1434,138,0
chr1	179310612	rs12755434	T	G	319.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.28;SOR=4.407;VQSLOD=18.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:336,24,0
chr1	179312235	rs10913728	G	A	1694.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.041;DB;DP=29;ExcessHet=1.5490;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-5.920e-01;SOR=0.323;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1063,87,0
chr1	179312525	rs12691483	G	A	849.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.479e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.76;ReadPosRankSum=-1.813e+00;SOR=1.292;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:44:520,44,0
chr1	179317895	rs200924427	ATGTGTGTGTGTG	A	3601.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=23;ExcessHet=3.0103;FS=7.238;MQ=59.78;MQRankSum=0.00;QD=26.61;SOR=2.955;VQSLOD=3.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:70:1036,70,0
chr1	179339334	rs6666358	G	A	1411.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.13;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=1.27;SOR=0.925;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:520,39,0
chr1	179348646	rs141815555	T	TG	3470.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.976;DB;DP=60;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.27;ReadPosRankSum=0.456;SOR=0.671;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2164,180,0
chr1	179351606	rs4625243	G	C	634.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=-7.030e-01;SOR=1.101;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:334,27,0
chr1	179354304	rs7541905	A	G	2734.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.76;DB;DP=27;ExcessHet=3.0103;FS=3.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.08;ReadPosRankSum=-3.570e-01;SOR=1.525;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1070,81,0
chr1	179380472	rs5779024	GT	G	3440.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.781;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=-1.250e-01;SOR=0.665;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1434,141,0
chr1	179398536	rs6662859	G	A	1204.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.43;ReadPosRankSum=-1.085e+00;SOR=4.743;VQSLOD=13.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:467,36,0
chr1	179398563	rs4652382	C	G	1528.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.53;ReadPosRankSum=0.210;SOR=3.442;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:598,51,0
chr1	179398875	rs4652383	T	A	1509.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.803;DB;DP=28;ExcessHet=1.5490;FS=3.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=0.620;SOR=0.281;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:982,84,0
chr1	179399415	rs7555895	A	G	62.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=2.303;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr1	179401379	rs11314780	CT	C	570.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=-8.600e-02;SOR=0.538;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:538,57,0
chr1	179401526	rs7550638	C	G	1913.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.080e+00;DB;DP=49;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.36;ReadPosRankSum=0.615;SOR=0.648;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1417,106,0
chr1	179401559	rs7550656	C	T	1341.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=32;ExcessHet=1.5490;FS=5.282;MQ=60.00;MQRankSum=0.00;QD=19.17;ReadPosRankSum=1.46;SOR=0.287;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,29:32:42:873,42,0
chr1	179401564	rs10706073	CT	C	2904.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.766;DB;DP=33;ExcessHet=3.0103;FS=1.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=0.028;SOR=0.956;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,32:33:95:1338,95,0
chr1	179401599	rs7550736	C	T	931.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;DB;DP=25;ExcessHet=1.5490;FS=3.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-7.050e-01;SOR=1.483;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,23:25:25:643,25,0
chr1	179401896	rs6673472	G	A	1108.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.640e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.18;ReadPosRankSum=0.567;SOR=0.960;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:311,30,0
chr1	179402037	rs199738366	C	CA	1187.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.050e-01;DB;DP=33;ExcessHet=1.5490;FS=2.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.028;SOR=0.413;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:854,99,0
chr1	179414105	rs11577579	A	C	2613.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=59;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=0.376;SOR=0.623;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1988,177,0
chr1	179418056	rs10913769	G	T	103.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.46;SOR=2.833;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	179418132	rs10913770	C	T	325.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:265,21,0
chr1	179418181	rs10913771	T	C	804.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=0.623;SOR=1.329;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:559,51,0
chr1	179418562	rs7522064	A	T	432.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.04;ReadPosRankSum=0.703;SOR=1.292;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	179437827	rs7514278	G	A	828.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.63;SOR=6.184;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
chr1	179462149	rs7549194	A	G	3163.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.46;SOR=6.518;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:942,69,0
chr1	179494612	rs35486954	CTACA	C	483.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=10;ExcessHet=1.5490;FS=6.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.24;ReadPosRankSum=-4.310e-01;SOR=0.069;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:428,30,0
chr1	179494665	rs4620484	C	T	613.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.085;DB;DP=7;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=1.11;SOR=2.419;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr1	179497359	rs6698201	T	C	994.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.006e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=0.484;SOR=0.693;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:490,42,0
chr1	179497725	rs12724901	C	T	193.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=3.611;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr1	179520151	rs1410590	C	T	1689.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.97;DB;DP=13;ExcessHet=3.0103;FS=3.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.18;ReadPosRankSum=0.438;SOR=2.480;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:533,39,0
chr1	179520254	rs1410591	C	G	6223.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.560e-01;DB;DP=69;ExcessHet=3.0103;FS=0.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=1.48;SOR=0.607;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2322,207,0
chr1	179520506	rs1410592	G	A	6441.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=83;ExcessHet=3.0103;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=-1.553e+00;SOR=0.627;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2706,249,0
chr1	179526214	rs61747728	C	T	7139.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.463e+00;DB;DP=162;ExcessHet=1.5490;FS=2.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=-1.297e+00;SOR=0.572;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:4929,484,0
chr1	179528917	rs12401708	G	A	2214.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.350e-01;DB;DP=58;ExcessHet=1.5490;FS=3.234;MQ=59.99;MQRankSum=0.775;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=-7.090e-01;SOR=0.439;VQSLOD=2.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1645,171,0
chr1	179528942	rs12401711	G	A	2295.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.23;DB;DP=54;ExcessHet=1.5490;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=-3.140e-01;SOR=0.703;VQSLOD=6.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1743,162,0
chr1	179529150	rs10913817	T	C	392.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.69;ReadPosRankSum=0.967;SOR=3.611;VQSLOD=17.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:147,12,0
chr1	179530141	rs17278707	A	C	103.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=2.833;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr1	179544898	rs1079292	T	C	11949.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.87;SOR=1.101;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4059,398,0
chr1	179545050	rs12406197	C	A	1586.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.67;ReadPosRankSum=1.54;SOR=0.564;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,35:36:97:1148,97,0
chr1	179590352	rs61826406	C	T	3299.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.054e+00;DB;DP=66;ExcessHet=1.5490;FS=0.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=-2.380e-01;SOR=0.558;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2139,198,0
chr1	179631242	rs35448215	G	A	2691.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.230e-01;DB;DP=58;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.61;ReadPosRankSum=0.148;SOR=0.710;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1814,173,0
chr1	179852074	rs1281378	T	C	17889.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.643e+00;DB;DP=184;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.74;ReadPosRankSum=1.05;SOR=0.792;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,184:184:99:5622,552,0
chr1	179852552	rs605807	T	G	2693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=3.675;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:760,63,0
chr1	179858333	rs1300068	C	T	2412.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=4.047;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:548,48,0
chr1	179858444	rs2245425	G	A	8148.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.83;SOR=0.993;VQSLOD=5.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2394,224,0
chr1	179876900	rs1281380	A	T	1951.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=60;ExcessHet=3.9794;FS=0.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.00;SOR=0.602;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:745,0,625
chr1	179876988	rs609521	C	G	5226.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639e+00;DB;DP=75;ExcessHet=3.0103;FS=3.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.016;SOR=0.606;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,33:75:99:653,0,994
chr1	179877048	rs34218138	C	CT	641.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.270e-01;DB;DP=24;ExcessHet=3.0103;FS=3.768;MQ=59.92;MQRankSum=0.00;QD=16.44;ReadPosRankSum=0.064;SOR=0.247;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:24:78:78,0,159
chr1	179882450	rs524166	A	T	720.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=5.994;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	179887125	rs627897	G	A	10645.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.79;SOR=0.719;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2842,258,0
chr1	179972581	rs185626097	G	A	32.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.69;ReadPosRankSum=-6.450e-01;SOR=0.072;VQSLOD=22.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:41:41,0,386
chr1	180010911	rs16855164	A	G	949.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.570;SOR=0.768;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,39:91:99:958,0,1157
chr1	180013103	rs56271885	CT	C	232.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=0.233;SOR=1.085;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:241,0,166
chr1	180022760	rs2040083	A	T	961.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.01;SOR=6.439;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	180067913	.	C	T	82.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112e+00;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.14;ReadPosRankSum=-6.240e-01;SOR=0.301;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:91:91,0,301
chr1	180080629	rs79555092	C	T	70.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.42;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:79,0,35
chr1	180124379	rs35481032	T	C	1036.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.54;ReadPosRankSum=0.510;SOR=2.303;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,13:15:6:454,0,6
chr1	180124450	rs3820312	A	C	517.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.37;ReadPosRankSum=-3.190e-01;SOR=1.127;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:52:198,0,52
chr1	180144291	rs71118443	C	CA	1161.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.168;DB;DP=27;ExcessHet=3.9794;FS=1.151;MQ=59.89;MQRankSum=0.00;QD=16.14;ReadPosRankSum=1.48;SOR=0.564;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,26:27:54:639,54,0
chr1	180145088	rs2298206	A	G	9208.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=0.756;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3877,381,0
chr1	180151666	rs2242110	A	T	515.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=3.767;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:328,24,0
chr1	180155376	rs2298207	C	G	1303.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=10;ExcessHet=3.0103;FS=2.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.43;ReadPosRankSum=-4.500e-02;SOR=1.721;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:180155376_C_G:445,30,0:180155376
chr1	180155382	rs3216058	AG	A	1524.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.47;SOR=4.112;VQSLOD=6.67;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:30:1|1:180155376_C_G:445,30,0:180155376
chr1	180159797	rs3215795	TC	T	1096.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.900e-02;DB;DP=9;ExcessHet=3.0103;FS=3.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=-9.840e-01;SOR=2.476;VQSLOD=6.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:321,27,0
chr1	180167774	rs17299812	C	T	192.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-3.070e-01;SOR=1.863;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:201,0,195
chr1	180180439	rs355609	G	C,T	499.13	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.09;SOR=5.283;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,1,6:7:21:261,223,220,39,0,21
chr1	180180669	rs164980	A	G	3655.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=55;ExcessHet=3.0103;FS=2.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=-1.517e+00;SOR=0.456;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1754,165,0
chr1	180180756	rs355610	C	T	770.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=1.74;SOR=0.813;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:393,0,293
chr1	180217136	rs57664116	G	A	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=0.921;SOR=1.863;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:63:216,0,63
chr1	180217152	rs61809133	C	T	286.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.322;SOR=0.446;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:295,0,155
chr1	180217192	rs61809134	C	A	413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-3.960e-01;SOR=0.990;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:422,0,402
chr1	180217250	rs4652490	C	T	920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;DB;DP=76;ExcessHet=3.0103;FS=3.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.319e+00;SOR=0.412;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,41:76:99:929,0,729
chr1	180217791	rs3911334	C	T	97.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,112
chr1	180235407	rs7538065	G	A	371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324e+00;DB;DP=28;ExcessHet=3.0103;FS=1.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.441;SOR=0.394;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:380,0,344
chr1	180240752	rs3845397	C	T	3268.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.94;DB;DP=37;ExcessHet=3.0103;FS=2.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.99;ReadPosRankSum=1.78;SOR=1.297;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1290,109,0
chr1	180243524	rs7536561	A	G	12723.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=168;ExcessHet=3.0103;FS=1.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=1.69;SOR=0.691;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,168:168:99:5268,503,0
chr1	180257692	rs2254465	A	C	2267.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=1.810;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:596,57,0
chr1	180283659	rs2764433	T	C	962.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=2.303;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:271,24,0
chr1	180366483	rs10798759	G	C	684.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=2.712;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr1	180382782	rs4421553	T	A	303.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=4.407;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr1	180471053	rs200762440	AC	A	538.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630e-01;DB;DP=23;ExcessHet=6.9897;FS=3.571;MQ=59.98;MQRankSum=0.00;QD=5.99;ReadPosRankSum=-4.200e-01;SOR=0.223;VQSLOD=5.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,8:23:91:91,0,279
chr1	180471054	rs12723183	C	*,A	755.20	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=1.492;MQ=59.97;QD=8.39;SOR=1.092;VQSLOD=0.189;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,8,15:23:91:1217,381,279,197,0,91
chr1	180757117	rs34984251	G	GT	1430.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.14;SOR=3.797;VQSLOD=6.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:442,33,0
chr1	180849494	rs10914123	T	C	1292.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280e+00;DB;DP=26;ExcessHet=3.9794;FS=7.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=0.329;SOR=3.010;VQSLOD=16.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:283,0,530
chr1	180885430	rs10732273	T	C	21246.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=247;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=0.908;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,247:247:99:7481,740,0
chr1	180886216	rs77695365	C	T	3572.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008e+00;DB;DP=134;ExcessHet=3.9794;FS=0.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=1.02;SOR=0.651;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,73:134:99:1860,0,1755
chr1	180886730	rs75226400	C	T	50.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=0.431;SOR=0.892;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,169
chr1	180887289	rs7551076	G	A	242.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=0.842;SOR=1.270;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,150
chr1	180897521	rs7544551	C	T	9988.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.920e-01;DB;DP=135;ExcessHet=3.0103;FS=1.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.96;ReadPosRankSum=0.072;SOR=0.519;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4273,403,0
chr1	180897569	rs3747958	C	T	2345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340e-01;DB;DP=173;ExcessHet=3.0103;FS=1.192;MQ=59.91;MQRankSum=-9.270e-01;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-1.160e-01;SOR=0.569;VQSLOD=2.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:81,92:173:99:2354,0,2001
chr1	180897792	rs35197779	ATGC	A	4600.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=-1.727e+00;SOR=1.166;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,24:47:99:903,0,996
chr1	180904063	rs12079084	T	A	467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=1.80;SOR=0.569;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:476,0,567
chr1	180905448	rs3795504	G	T	11691.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=474;ExcessHet=3.9794;FS=2.453;MQ=60.00;MQRankSum=0.991;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.100;SOR=0.869;VQSLOD=2.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:242,232:474:99:6009,0,5865
chr1	180913597	rs2331995	A	G	16339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=153;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=0.736;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4783,459,0
chr1	180913874	rs944234	C	T	1436.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=5.784;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:331,27,0
chr1	180914304	rs944235	C	T	2045.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=3.219;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:777,63,0
chr1	180919255	rs2297185	C	T	238.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.210;SOR=0.836;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:61:61,0,162
chr1	180933498	rs4652543	C	T	2404.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=26;ExcessHet=3.9794;FS=6.001;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=1.20;SOR=0.223;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:444,0,382
chr1	180957130	rs7528255	C	A	662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=1.54;SOR=0.399;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:113,0,202
chr1	181022517	rs35459172	CA	C	431.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DB;DP=22;ExcessHet=6.9897;FS=1.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.58;ReadPosRankSum=-1.820e-01;SOR=1.127;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,3:22:8:8,0,372
chr1	181058643	rs1361365	A	G	2931.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.35;SOR=0.948;VQSLOD=17.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:383,39,0
chr1	181144597	rs77633435	C	G	1016.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-1.260e-01;SOR=0.796;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:528,0,504
chr1	181549547	rs10494540	T	G	1364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.79;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.396;SOR=0.773;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:680,0,313
chr1	181680082	rs17743547	G	A	1674.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.000e-03;DB;DP=139;ExcessHet=3.0103;FS=0.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-3.940e-01;SOR=0.790;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,69:139:99:1683,0,1705
chr1	181684605	rs12407563	A	G	4710.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=1.517;VQSLOD=15.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1231,128,0
chr1	181686216	rs7540850	T	C	2252.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DB;DP=73;ExcessHet=3.9794;FS=1.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=0.076;SOR=0.828;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,40:73:99:1048,0,808
chr1	181688868	rs4651113	G	A	895.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.070e-01;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.239;SOR=0.641;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:553,0,614
chr1	181701423	rs2280865	C	T	588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=1.04;SOR=0.314;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:378,0,278
chr1	181701799	rs35737760	T	A	3378.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.91;DB;DP=155;ExcessHet=3.9794;FS=3.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-3.000e-03;SOR=0.903;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,55:155:99:1503,0,2648
chr1	181702616	rs41304253	G	A	4293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-01;DB;DP=146;ExcessHet=3.9794;FS=0.424;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=1.55;SOR=0.664;VQSLOD=5.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,74:146:99:1986,0,1994
chr1	181703276	rs12139677	T	G	402.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=3.258;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr1	181706552	rs2280866	G	A	798.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=0.867;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:266,0,387
chr1	181706685	rs34488539	C	T	3218.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.070e-01;DB;DP=155;ExcessHet=3.9794;FS=1.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-8.650e-01;SOR=0.822;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,86:155:99:2104,0,1624
chr1	181708168	rs73045109	A	G	1192.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357e+00;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-3.700e-02;SOR=0.624;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,25:43:99:698,0,480
chr1	181714172	rs3843280	G	A	571.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=5.549;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:182,15,0
chr1	181714466	rs375841404	AT	A	79.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.18;ReadPosRankSum=1.10;SOR=0.740;VQSLOD=5.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:56,11:67:88:88,0,1245
chr1	181719679	rs704332	C	T	4987.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=67;ExcessHet=3.9794;FS=1.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=-1.478e+00;SOR=0.827;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,33:67:99:814,0,852
chr1	181724209	rs704331	A	G	74.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=0.135;SOR=0.368;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:83:83,0,177
chr1	181725110	rs4652678	T	C	1776.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650e-01;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.754;SOR=0.727;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,20:45:99:493,0,630
chr1	181726413	rs704330	G	A	2066.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.31;SOR=3.729;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:503,45,0
chr1	181727030	rs12564606	A	T	3822.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=135;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=1.03;SOR=0.684;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,73:135:99:2017,0,1556
chr1	181727273	rs704329	G	A	2456.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=94;ExcessHet=3.9794;FS=1.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.05;SOR=0.849;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,49:94:99:1287,0,1066
chr1	181727661	rs59106703	G	C	233.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.9794;FS=4.393;MQ=58.96;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=0.598;SOR=2.833;VQSLOD=-2.223e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:98:98,0,108
chr1	181731667	rs149636359	T	TC	1975.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=71;ExcessHet=3.9794;FS=4.417;MQ=60.00;MQRankSum=0.00;QD=13.91;ReadPosRankSum=0.937;SOR=0.394;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,32:71:99:1078,0,1233
chr1	181732695	rs72735265	A	G	709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.04;SOR=0.807;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:301,0,580
chr1	181740201	rs199928	T	C	271.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.31;SOR=4.174;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:286,21,0
chr1	181741301	rs199930	C	T	5119.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DB;DP=217;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.425;SOR=0.708;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,109:217:99:2484,0,2542
chr1	181745580	rs199932	G	A	1415.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e-01;DB;DP=50;ExcessHet=3.9794;FS=1.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.745;SOR=0.925;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,27:50:99:757,0,661
chr1	181750469	rs704328	G	T	1132.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=55;ExcessHet=3.9794;FS=2.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-3.810e-01;SOR=1.051;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,13:55:99:342,0,1159
chr1	181752769	rs144664284	A	AT	866.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290e-01;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=0.00;QD=13.54;ReadPosRankSum=-3.550e-01;SOR=0.756;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,12:29:99:212,0,424
chr1	181752783	rs201160192	T	TG	351.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.671;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.33;ReadPosRankSum=0.793;SOR=0.503;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,11:33:99:360,0,598
chr1	181752923	rs36163765	AAGCTT	A	7045.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=1.551;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2361,160,0
chr1	181753030	rs546191	T	C	1465.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=7.112;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:789,54,0
chr1	181754059	rs576602	A	C	156.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=1.5490;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=-9.670e-01;SOR=3.229;VQSLOD=18.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	181754314	rs579105	G	C	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=1.45;SOR=1.609;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:363,0,365
chr1	181754803	rs473200	C	T	862.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-1.562e+00;SOR=0.762;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,36:90:99:871,0,1415
chr1	181759417	rs593875	C	G	166.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.56;MQRankSum=-1.273e+00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.798;SOR=0.260;VQSLOD=0.040;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,5:15:99:175,0,376
chr1	181759426	.	CT	C	376.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.130e-01;DP=16;ExcessHet=6.9897;FS=0.000;MQ=59.67;MQRankSum=0.738;QD=5.89;ReadPosRankSum=-2.900e-01;SOR=0.941;VQSLOD=0.318;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,3:16:46:46,0,325
chr1	181759443	rs34600959	T	TTA	369.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=59.75;MQRankSum=0.712;POSITIVE_TRAIN_SITE;QD=7.69;ReadPosRankSum=1.58;SOR=0.476;VQSLOD=1.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,8:23:99:244,0,526
chr1	181759473	rs593942	T	A	470.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=39;ExcessHet=3.0103;FS=1.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-1.170e+00;SOR=1.002;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:479,0,511
chr1	181759657	rs704326	G	A	2371.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;DB;DP=103;ExcessHet=3.9794;FS=18.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-2.110e-01;SOR=1.165;VQSLOD=12.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,52:103:99:1315,0,1411
chr1	182026813	rs12568050	G	C	2094.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=165;ExcessHet=3.0103;FS=4.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=2.03;SOR=1.060;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,82:165:99:2103,0,2069
chr1	182027022	rs12564283	C	T	1852.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.744;SOR=0.722;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,76:163:99:1861,0,2138
chr1	182354850	rs2296520	A	G	1071.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.324;SOR=0.732;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:211,0,386
chr1	182355046	rs2296519	A	G	2161.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=54;ExcessHet=6.9897;FS=2.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=0.268;SOR=0.902;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:517,0,759
chr1	182356399	rs1058111	A	G	1996.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DB;DP=57;ExcessHet=6.9897;FS=8.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.081;SOR=1.244;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,23:57:99:655,0,799
chr1	182368630	rs36049878	CA	C	159.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=7;ExcessHet=3.9794;FS=3.136;MQ=60.00;MQRankSum=0.00;QD=12.28;ReadPosRankSum=1.07;SOR=0.136;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:31:31,0,103
chr1	182369078	rs6698722	G	A	11074.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=1.036;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3131,291,0
chr1	182369233	rs6674281	A	G	7585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=164;ExcessHet=6.9897;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.329;SOR=0.808;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,91:164:99:2545,0,1740
chr1	182369738	rs7551829	G	A	1072.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=6.666;VQSLOD=23.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr1	182419624	rs12092257	T	C	139.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.618;SOR=0.120;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:148,0,191
chr1	182429295	rs10572829	CTG	C	359.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.49;ReadPosRankSum=-1.198e+00;SOR=0.778;VQSLOD=6.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,11:31:99:292,0,583
chr1	182429728	rs266508	T	C	346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.680e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.170;SOR=0.610;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:355,0,602
chr1	182429995	rs10911080	C	A	545.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=-3.070e-01;SOR=0.382;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:204,0,230
chr1	182443462	rs649437	T	C	2884.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DB;DP=57;ExcessHet=1.5490;FS=1.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=-2.067e+00;SOR=0.892;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:626,0,870
chr1	182491107	rs607269	A	C	2912.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.08;SOR=2.899;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:60:841,60,0
chr1	182491111	rs12142736	T	C	1427.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.73;ReadPosRankSum=-4.010e-01;SOR=0.677;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:415,0,258
chr1	182491490	rs490273	T	A	326.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=4.407;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	182496829	rs7535533	A	G	1781.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090e-01;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-5.770e-01;SOR=0.736;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,26:67:99:602,0,1049
chr1	182497021	rs266511	C	A	132.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=-1.150e+00;SOR=0.941;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,1:4:28:28,0,121
chr1	182499673	rs370626197	T	TAC,TACACACACAC	429.35	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.34;SOR=1.085;VQSLOD=4.39;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,1,0:1:29:95,65,62,32,0,29
chr1	182501933	rs266534	C	A	5857.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=153;ExcessHet=1.5490;FS=0.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=-1.223e+00;SOR=0.643;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,81:153:99:1858,0,1876
chr1	182502033	rs266535	G	T	7852.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.99;SOR=2.192;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2891,240,0
chr1	182509269	rs266531	G	A	5406.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.38;SOR=2.553;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1663,141,0
chr1	182509292	rs3856115	A	G	1601.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=59;ExcessHet=3.9794;FS=4.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.691;SOR=1.148;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,31:59:99:877,0,684
chr1	182509617	rs3911280	C	A	806.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.199e+00;DB;DP=19;ExcessHet=3.9794;FS=9.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.073;SOR=0.086;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:261,0,298
chr1	182509646	rs12749557	T	C	447.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=-2.720e-01;SOR=0.963;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:151,0,132
chr1	182517357	rs6657620	G	C	1321.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=25;ExcessHet=3.9794;FS=2.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=1.18;SOR=1.162;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:444,0,288
chr1	182517642	rs10911094	C	A	2248.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-02;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=1.67;SOR=0.775;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:661,0,689
chr1	182522552	rs266544	C	T	3611.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=57;ExcessHet=3.9794;FS=1.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=1.20;SOR=0.797;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,28:57:99:679,0,783
chr1	182522952	rs10911096	A	G	410.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.54;ReadPosRankSum=-1.036e+00;SOR=2.833;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:100,0,67
chr1	182523503	rs561686	A	G	159.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.96;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:61:0|1:182523503_A_G:81,0,61:182523503
chr1	182523504	rs561684	A	G	159.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.96;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:61:0|1:182523503_A_G:81,0,61:182523503
chr1	182523591	rs266547	A	C	607.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=9;ExcessHet=3.9794;FS=5.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=-1.200e-01;SOR=2.303;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:138,0,103
chr1	182544815	rs11807829	T	C	1166.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DB;DP=22;ExcessHet=1.5490;FS=3.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=0.410;SOR=1.412;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:209,0,379
chr1	182549019	rs533259	A	G	10197.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.484e+00;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=1.60;SOR=0.747;VQSLOD=6.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3923,384,0
chr1	182549336	rs579006	A	G	262.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=-1.036e+00;SOR=2.303;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:86,0,68
chr1	182550200	rs501286	A	G	1697.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=4.317;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:448,36,0
chr1	182551337	rs627928	A	C	4680.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DB;DP=96;ExcessHet=1.5490;FS=1.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.50;ReadPosRankSum=0.375;SOR=0.828;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,45:96:99:1137,0,1318
chr1	182554557	rs486907	C	T	5711.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=129;ExcessHet=1.5490;FS=2.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=0.399;SOR=0.866;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,56:129:99:1478,0,1881
chr1	182569626	rs1144566	T	C	11526.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.02;SOR=1.140;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3507,363,0
chr1	182571003	rs610367	C	T	644.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=16;ExcessHet=3.9794;FS=6.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=2.90;SOR=2.215;VQSLOD=18.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:196,0,286
chr1	182571277	rs569790	C	T	2491.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=105;ExcessHet=3.9794;FS=4.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.37;SOR=1.008;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1205,0,1350
chr1	182573227	rs509476	T	C	16473.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.14;SOR=0.834;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5342,513,0
chr1	182778094	.	TA	T,TAA	393.36	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.431e+00;DP=24;ExcessHet=3.9794;FS=3.017;MQ=60.00;MQRankSum=0.00;QD=9.37;ReadPosRankSum=0.707;SOR=0.292;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,12,4:24:7:220,7,59,199,0,359
chr1	182778367	rs971040	G	A	4685.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=2.042;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1558,138,0
chr1	182784022	rs2275171	T	C	7855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=1.549;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2171,186,0
chr1	182836261	.	C	T	47.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915e+00;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.27;ReadPosRankSum=-8.120e-01;SOR=0.132;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:56:56,0,280
chr1	182850727	rs6677840	T	C	6810.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=0.766;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2357,221,0
chr1	182993025	rs10911194	C	T	17445.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536e+00;DB;DP=456;ExcessHet=6.9897;FS=2.450;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.929;SOR=0.545;VQSLOD=6.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:236,220:456:99:5543,0,6112
chr1	182993358	rs12030652	G	T	3420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.038e+00;DB;DP=54;ExcessHet=6.9897;FS=8.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-9.100e-01;SOR=0.247;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:923,0,778
chr1	182993438	rs10911195	T	C	820.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=1.01;SOR=0.732;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:87:87,0,181
chr1	183072590	rs2296288	T	C	6067.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080e-01;DB;DP=132;ExcessHet=6.9897;FS=1.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.952;SOR=0.625;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,73:132:99:1801,0,1405
chr1	183072701	rs2296289	C	T	4546.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=81;ExcessHet=6.9897;FS=9.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-5.360e-01;SOR=1.114;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1332,0,832
chr1	183072908	rs10797835	T	C	1332.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.790e-01;DB;DP=29;ExcessHet=6.9897;FS=6.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-6.940e-01;SOR=1.451;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:29:99:302,0,445
chr1	183077296	rs3835273	A	AG	804.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=-9.800e-02;SOR=1.009;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:352,0,232
chr1	183077615	rs3765521	C	T	694.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.962e+00;DB;DP=7;ExcessHet=6.9897;FS=3.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=0.412;SOR=0.186;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:99:0|1:183077615_C_T:199,0,156:183077615
chr1	183077618	rs3765522	C	T	672.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=0.863;SOR=0.504;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:183077615_C_T:199,0,156:183077615
chr1	183079376	rs3818417	G	A	146.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:74,0,35
chr1	183079412	rs2296290	C	T	233.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:71,0,31
chr1	183079509	rs2296291	C	T	1420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=17;ExcessHet=6.9897;FS=6.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=-9.800e-02;SOR=1.697;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:248,0,280
chr1	183079853	rs6672093	T	C	1173.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.032e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=0.213;SOR=0.682;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:341,0,193
chr1	183084607	rs3736888	A	G	4435.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=76;ExcessHet=6.9897;FS=1.147;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=-9.430e-01;SOR=0.604;VQSLOD=6.28;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,40:76:99:0|1:183084607_A_G:1605,0,1759:183084607
chr1	183084608	rs2027082	C	A	4435.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=77;ExcessHet=6.9897;FS=1.145;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=-7.390e-01;SOR=0.601;VQSLOD=6.33;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,41:77:99:0|1:183084607_A_G:1605,0,1759:183084607
chr1	183085568	rs6424887	C	T	1256.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.073e+00;DB;DP=19;ExcessHet=6.9897;FS=2.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=-5.380e-01;SOR=0.377;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:200,0,376
chr1	183085611	rs10689020	C	CAA	1373.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.370e-01;DB;DP=35;ExcessHet=6.9897;FS=0.840;MQ=59.95;MQRankSum=0.00;QD=13.74;ReadPosRankSum=-1.273e+00;SOR=0.572;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:35:99:390,0,582
chr1	183085696	rs6424888	A	G	3420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551e+00;DB;DP=92;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.098;SOR=0.714;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,45:92:99:971,0,1123
chr1	183085755	rs20563	A	G	4445.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=100;ExcessHet=6.9897;FS=4.018;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-1.690e-01;SOR=0.744;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1126,0,1195
chr1	183086238	rs10752900	G	A	828.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377e+00;DB;DP=17;ExcessHet=6.9897;FS=2.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-9.800e-02;SOR=0.704;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:232,0,342
chr1	183086757	rs2296292	A	C	5758.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052e+00;DB;DP=162;ExcessHet=6.9897;FS=1.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.186;SOR=0.749;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,92:162:99:2346,0,1751
chr1	183090751	rs2333621	A	G	1118.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=27;ExcessHet=6.9897;FS=0.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.62;SOR=0.518;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:207,0,375
chr1	183093875	rs20557	T	C	2985.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004e+00;DB;DP=89;ExcessHet=6.9897;FS=2.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.861;SOR=0.859;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1056,0,1221
chr1	183094191	rs2093982	T	C	182.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=-1.036e+00;SOR=0.446;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
chr1	183094210	rs2093983	T	C	134.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.15;ReadPosRankSum=-9.670e-01;SOR=0.368;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	183094418	rs5779155	A	AC	631.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=0.00;SOR=1.002;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:124,0,126
chr1	183094547	rs20558	T	C	3741.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.332e+00;DB;DP=111;ExcessHet=6.9897;FS=6.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-2.000e-02;SOR=0.456;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,51:111:99:1125,0,1470
chr1	183095185	rs55856623	TAA	T	1289.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079e+00;DB;DP=22;ExcessHet=6.9897;FS=22.126;MQ=60.00;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=0.990;SOR=0.023;VQSLOD=0.409;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,13:22:99:408,0,238
chr1	183095234	rs1886501	A	G	2278.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=39;ExcessHet=6.9897;FS=1.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-1.000e-01;SOR=0.556;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,23:39:99:678,0,480
chr1	183095477	rs2296293	G	A	2749.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720e+00;DB;DP=53;ExcessHet=6.9897;FS=0.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=1.19;SOR=0.779;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:654,0,741
chr1	183096253	rs3066017	T	TATA	652.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=10;ExcessHet=6.9897;FS=3.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=0.105;SOR=2.517;VQSLOD=6.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:99:105,0,332
chr1	183096634	rs1413390	G	A	983.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;DB;DP=18;ExcessHet=6.9897;FS=1.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=1.49;SOR=0.924;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:251,0,279
chr1	183096668	rs1413389	C	T	918.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.882e+00;DB;DP=15;ExcessHet=6.9897;FS=3.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-1.450e-01;SOR=0.148;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:213,0,301
chr1	183096694	rs1413388	T	C	473.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-3.950e-01;SOR=0.434;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:103,0,245
chr1	183097956	rs113559578	G	GTTA	2038.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DB;DP=45;ExcessHet=6.9897;FS=2.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-3.100e-01;SOR=0.889;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,19:45:99:708,0,1147
chr1	183098001	rs10797851	A	G	987.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DB;DP=27;ExcessHet=6.9897;FS=3.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.815;SOR=1.288;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:329,0,415
chr1	183099701	rs2296300	G	A	734.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DB;DP=35;ExcessHet=6.9897;FS=1.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=-2.900e-01;SOR=0.509;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,13:35:99:325,0,589
chr1	183100307	.	C	CAA	287.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DP=2;ExcessHet=3.9794;FS=0.000;MQ=59.34;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=0.517;SOR=0.368;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:9:80,9,0
chr1	183100555	rs2333620	T	C	1757.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.010e-01;DB;DP=35;ExcessHet=6.9897;FS=1.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-3.040e-01;SOR=1.028;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,15:35:99:575,0,742
chr1	183100563	rs4997370	G	GGT,GTGTGTGT	1909.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.039e+00;DB;DP=13;ExcessHet=3.0103;FS=4.401;MQ=59.90;MQRankSum=0.00;QD=32.28;ReadPosRankSum=-1.011e+00;SOR=2.885;VQSLOD=4.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,6:13:99:732,568,563,188,0,704
chr1	183100596	rs2333619	A	G	898.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-02;DB;DP=12;ExcessHet=6.9897;FS=3.445;MQ=59.81;MQRankSum=0.00;QD=21.40;ReadPosRankSum=0.236;SOR=1.999;VQSLOD=3.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:189,0,278
chr1	183100598	rs4047797	T	G	898.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.80;MQRankSum=0.00;QD=24.97;ReadPosRankSum=0.236;SOR=1.697;VQSLOD=4.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:189,0,278
chr1	183101427	rs148796825	AAAT	A	372.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.22;ReadPosRankSum=-5.240e-01;SOR=3.056;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:9:1|1:183101427_AAAT_A:135,9,0:183101427
chr1	183101444	rs12071514	A	C	592.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=6;ExcessHet=6.9897;FS=4.260;MQ=60.00;MQRankSum=0.00;QD=24.71;ReadPosRankSum=0.179;SOR=2.613;VQSLOD=19.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:183101427_AAAT_A:117,0,238:183101427
chr1	183101471	rs12061219	G	A	1131.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=0.123;SOR=0.717;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,8:13:99:0|1:183101427_AAAT_A:249,0,304:183101427
chr1	183101686	rs12095664	G	A	2075.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250e-01;DB;DP=51;ExcessHet=6.9897;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-1.240e-01;SOR=0.894;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,21:51:99:538,0,772
chr1	183102719	rs73036945	C	T	1383.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=0.411;SOR=0.934;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:456,0,362
chr1	183103653	rs3768614	T	A	97.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=0.967;SOR=1.329;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:53,0,32
chr1	183104003	rs3831074	GGTCTGT	G	2164.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=32;ExcessHet=6.9897;FS=1.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=-4.280e-01;SOR=0.889;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,14:32:99:534,0,787
chr1	183104079	rs2296298	C	G	1221.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751e+00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.553;SOR=0.787;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:363,0,331
chr1	183104340	rs35182436	AT	A	1603.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DB;DP=46;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.387;SOR=0.692;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,15:46:99:285,0,729
chr1	183105324	rs2296297	C	T	864.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=12;ExcessHet=6.9897;FS=2.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-3.000e-03;SOR=1.493;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:274,0,122
chr1	183105399	rs2296296	C	G	2389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=39;ExcessHet=6.9897;FS=1.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-2.870e-01;SOR=0.545;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:657,0,466
chr1	183105534	rs20560	T	C	4879.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;DB;DP=100;ExcessHet=6.9897;FS=1.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-7.120e-01;SOR=0.764;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,53:100:99:1461,0,1215
chr1	183105855	rs11306131	CT	C	30.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-6.740e-01;SOR=0.446;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,1:3:19:19,0,47
chr1	183106739	rs10797854	G	A	1282.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184e+00;DB;DP=30;ExcessHet=6.9897;FS=1.078;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-8.610e-01;SOR=0.497;VQSLOD=6.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:334,0,578
chr1	183112041	rs3359	G	C	701.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=10;ExcessHet=6.9897;FS=2.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.50;ReadPosRankSum=-1.240e-01;SOR=1.609;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:202,0,104
chr1	183155399	rs2276542	A	G	676.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999e+00;DB;DP=20;ExcessHet=3.9794;FS=2.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.913;SOR=1.802;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:196,0,446
chr1	183155715	rs60707856	CT	C	3360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DB;DP=86;ExcessHet=3.9794;FS=5.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=-1.251e+00;SOR=0.389;VQSLOD=6.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,41:86:99:0|1:183155715_CT_C:1579,0,2283:183155715
chr1	183155717	rs61418038	C	A	3360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.155e+00;DB;DP=85;ExcessHet=3.9794;FS=6.322;MQ=60.00;MQRankSum=0.00;QD=17.78;ReadPosRankSum=-1.441e+00;SOR=0.367;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,41:85:99:0|1:183155715_CT_C:1579,0,2283:183155715
chr1	183155778	rs6703054	A	C	1059.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.39;DB;DP=37;ExcessHet=3.9794;FS=14.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.426;SOR=3.702;VQSLOD=11.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,12:37:99:402,0,729
chr1	183176970	.	G	GT	1906.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.910e-01;DP=52;ExcessHet=3.9794;FS=0.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-1.840e-01;SOR=0.775;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,22:52:99:304,0,523
chr1	183184428	rs2274982	C	T	208.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.973;SOR=0.569;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:217,0,251
chr1	183184524	rs2274981	C	T	834.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=30;ExcessHet=3.9794;FS=12.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.31;SOR=2.595;VQSLOD=13.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:383,0,535
chr1	183184616	rs2274980	C	T	1628.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.28;SOR=0.636;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,25:72:99:573,0,1334
chr1	183184848	rs875794	T	G	2722.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985e+00;DB;DP=104;ExcessHet=3.9794;FS=1.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=0.951;SOR=0.790;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1098,0,1568
chr1	183184960	rs875795	C	T	718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.03;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.173;SOR=1.296;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:160,0,299
chr1	183187494	rs10911285	T	C	2073.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;DB;DP=85;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.563;SOR=0.690;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,35:85:99:880,0,1235
chr1	183187603	rs1129723	C	T	3604.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210e-01;DB;DP=129;ExcessHet=3.9794;FS=0.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.48;SOR=0.763;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,60:129:99:1474,0,1736
chr1	183191144	rs2296307	C	T	830.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e-02;DB;DP=38;ExcessHet=3.9794;FS=4.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=1.05;SOR=1.329;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:436,0,629
chr1	183192304	rs1047980	T	G	2698.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=121;ExcessHet=3.9794;FS=4.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=1.08;SOR=0.460;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,63:121:99:1607,0,1532
chr1	183192496	rs3738824	A	G	627.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=-3.880e-01;SOR=0.631;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,25:68:99:636,0,1175
chr1	183194619	rs2021956	A	G	810.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.792;SOR=0.685;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:277,0,418
chr1	183197305	rs6658628	A	G	708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.77;DB;DP=19;ExcessHet=3.9794;FS=3.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=0.491;SOR=0.105;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:341,0,296
chr1	183201970	rs2296303	G	C	947.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DB;DP=67;ExcessHet=3.0103;FS=4.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-5.800e-01;SOR=0.384;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,37:67:99:956,0,721
chr1	183204477	rs2296302	G	A	647.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.920e-01;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.388;SOR=0.856;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:225,0,333
chr1	183205480	rs3738823	C	T	103.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=0.842;SOR=1.609;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:32:112,0,32
chr1	183205523	.	CAA	C,CA	788.82	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.683;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.22;MQRankSum=-2.040e-01;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=0.908;SOR=0.500;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,7:14:87:276,119,131,103,0,87
chr1	183206573	rs1047981	G	A	1172.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037e+00;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-6.190e-01;SOR=0.639;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:400,0,777
chr1	183207603	rs1925043	T	C	892.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=36;ExcessHet=3.9794;FS=2.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.569;SOR=1.121;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,14:36:99:392,0,636
chr1	183208521	rs147657304	C	T	1553.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.543e+00;DB;DP=136;ExcessHet=3.0103;FS=1.357;MQ=60.00;MQRankSum=0.00;QD=11.42;ReadPosRankSum=0.997;SOR=0.710;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,67:136:99:1562,0,1909
chr1	183208842	rs648809	T	G	99.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=0.319;SOR=0.916;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:108,0,29
chr1	183209086	rs2477436	C	A	1909.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=59;ExcessHet=3.9794;FS=0.747;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-8.940e-01;SOR=0.819;VQSLOD=6.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,36:59:99:945,0,559
chr1	183212171	rs3768594	C	A	1038.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504e+00;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=1.81;SOR=0.524;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:430,0,509
chr1	183212548	rs3768593	T	G	1386.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=1.28;SOR=0.743;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,25:61:99:633,0,963
chr1	183222013	rs503243	G	A	496.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=0.265;SOR=0.678;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:287,0,289
chr1	183229954	.	CA	C	409.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.48;ReadPosRankSum=-5.660e-01;SOR=0.430;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:20:60,0,20
chr1	183230519	rs76816476	C	T	83.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=8.35;SOR=4.804;VQSLOD=9.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	183253213	rs607332	G	A	209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=15;ExcessHet=3.0103;FS=2.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.619;SOR=0.252;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:218,0,256
chr1	183253959	rs603850	T	G	1220.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=44;ExcessHet=3.9794;FS=4.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.282;SOR=1.391;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,22:44:99:604,0,556
chr1	183259454	.	G	T	943.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.470e-01;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.25;ReadPosRankSum=-8.300e-01;SOR=0.801;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,35:49:99:952,0,304
chr1	183261710	rs944189	A	G	1980.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.940e-01;DB;DP=43;ExcessHet=3.9794;FS=0.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=-4.370e-01;SOR=0.892;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:509,0,571
chr1	183387149	.	G	C	57.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.54;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,104
chr1	183441977	rs3905118	C	T	1416.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.98;DB;DP=36;ExcessHet=3.9794;FS=0.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.722;SOR=0.565;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:613,0,425
chr1	183441991	rs6671819	G	A	373.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.880e-01;DB;DP=28;ExcessHet=3.0103;FS=12.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-1.069e+00;SOR=3.767;VQSLOD=11.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:382,0,493
chr1	183471295	rs789193	G	T	1975.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.460e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.49;ReadPosRankSum=-5.580e-01;SOR=0.622;VQSLOD=6.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:710,60,0
chr1	183481943	.	CT	C	267.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;DP=31;ExcessHet=6.9897;FS=0.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.60;ReadPosRankSum=0.990;SOR=0.564;VQSLOD=6.70;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,11:31:99:0|1:183481943_CT_C:114,0,260:183481943
chr1	183486859	rs789169	G	A	7019.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.512e+00;DB;DP=104;ExcessHet=3.0103;FS=1.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.29;ReadPosRankSum=-4.400e-02;SOR=0.540;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:2820,308,0
chr1	183496658	rs2877978	A	G	351.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.210e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.453;SOR=0.420;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:123,0,351
chr1	183502195	rs116336622	A	G	138.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-1.437e+00;SOR=0.527;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:147,0,173
chr1	183502233	rs34309744	AT	A	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.01;ReadPosRankSum=1.52;SOR=0.250;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,8:23:99:216,0,464
chr1	183502731	rs189528237	G	C	452.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=34;ExcessHet=3.0103;FS=9.910;MQ=59.89;MQRankSum=0.896;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.683;SOR=2.833;VQSLOD=-6.434e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,14:34:99:461,0,576
chr1	183515428	rs2298083	G	A	476.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DB;DP=37;ExcessHet=3.0103;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.973;SOR=0.395;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:485,0,438
chr1	183516100	rs699246	G	C	382.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-2.230e-01;SOR=0.569;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:196,0,297
chr1	183525452	rs699244	T	G	8363.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=89;ExcessHet=3.0103;FS=0.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=0.419;SOR=0.605;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2754,266,0
chr1	183525620	rs789180	A	T	167.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=0.272;SOR=1.179;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:176,0,105
chr1	183534935	rs2296164	C	T	1423.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DB;DP=63;ExcessHet=3.9794;FS=2.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-1.759e+00;SOR=0.457;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,34:63:99:779,0,630
chr1	183542387	rs2274064	T	C	2453.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.057e+00;DB;DP=86;ExcessHet=3.9794;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.569;SOR=0.777;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,42:86:99:1108,0,1232
chr1	183542747	rs3818364	G	T	310.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=0.306;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,109
chr1	183556291	rs789192	A	G	576.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DB;DP=11;ExcessHet=1.5490;FS=2.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=0.091;SOR=0.269;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:98:196,0,98
chr1	183592416	rs2761573	G	T	5250.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370e+00;DB;DP=96;ExcessHet=1.5490;FS=0.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.480;SOR=0.782;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,56:96:99:1381,0,978
chr1	183592570	rs17488675	C	T	6043.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800e-02;DB;DP=114;ExcessHet=1.5490;FS=1.991;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=-3.510e-01;SOR=0.886;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,63:114:99:1535,0,1153
chr1	183604905	rs2767305	A	G	4754.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116e+00;DB;DP=83;ExcessHet=1.5490;FS=11.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=-1.148e+00;SOR=2.459;VQSLOD=15.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,41:83:99:1362,0,1382
chr1	183616926	rs1174657	T	C	2632.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050e-01;DB;DP=40;ExcessHet=1.5490;FS=10.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=-1.475e+00;SOR=0.463;VQSLOD=18.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:485,0,522
chr1	183617105	rs1174658	A	G	3074.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=87;ExcessHet=1.5490;FS=6.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=1.03;SOR=0.905;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1171,0,1159
chr1	183775704	rs368701909	CT	C	68.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.90;ReadPosRankSum=0.181;SOR=0.720;VQSLOD=5.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,6:31:74:74,0,572
chr1	183852914	rs10797919	G	C	2407.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=75;ExcessHet=3.9794;FS=1.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.026;SOR=0.703;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,38:75:99:1033,0,966
chr1	183857394	rs10911460	A	G	625.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.9794;FS=5.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.18;ReadPosRankSum=1.38;SOR=0.119;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,109
chr1	183860895	.	G	T	37.64	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=18.82;SOR=2.303;VQSLOD=14.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr1	183867085	rs3814330	C	T	1962.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=49;ExcessHet=6.9897;FS=3.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.034;SOR=0.430;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:714,0,640
chr1	183871637	rs4604659	G	A	4125.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=48;ExcessHet=3.9794;FS=2.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=1.31;SOR=0.892;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:680,0,466
chr1	183873898	rs10797920	A	G	1293.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.53;DB;DP=29;ExcessHet=6.9897;FS=1.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.405;SOR=1.295;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:401,0,511
chr1	183876182	rs11591089	C	T	2278.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=112;ExcessHet=3.9794;FS=4.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=-1.950e-01;SOR=0.590;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,49:112:99:1227,0,1494
chr1	183876287	rs16861715	T	C	2587.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.770e-01;DB;DP=76;ExcessHet=6.9897;FS=1.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.024;SOR=0.581;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,34:76:99:785,0,1092
chr1	183876489	rs12098028	C	A	585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=-5.920e-01;SOR=1.302;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:100,0,172
chr1	183876526	rs148826550	G	GT	70.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.64;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:183876526_G_GT:78,0,78:183876526
chr1	183876527	rs115896819	G	A	70.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.63;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:183876526_G_GT:78,0,78:183876526
chr1	183885406	rs10911467	A	G	337.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=1.21;SOR=0.507;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:232,0,202
chr1	183886016	rs10797921	A	G	372.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.83;ReadPosRankSum=0.524;SOR=3.442;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr1	183891159	rs11803613	C	G	707.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.565e+00;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=0.289;SOR=0.303;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:323,0,272
chr1	183895178	rs4328036	G	A	4659.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.582;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=-7.320e-01;SOR=0.804;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1642,164,0
chr1	183920391	rs2986549	C	T	778.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=4.712;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	183938304	rs4651158	C	A	856.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.16;ReadPosRankSum=1.05;SOR=0.859;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:30:425,30,0
chr1	183938313	rs10667502	G	GTT,GT	1023.27	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.33;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=1.50;SOR=0.952;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,11,3:14:36:546,81,36,283,0,240
chr1	183942950	rs2296714	C	T	1154.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=2.235;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:295,27,0
chr1	183944089	rs2077202	A	C	1715.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.94;SOR=4.712;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:431,33,0
chr1	183944444	rs2378795	C	T	1686.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=4.664;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:304,24,0
chr1	183947757	rs3833521	G	GA	1606.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.21;SOR=5.174;VQSLOD=6.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:464,48,0
chr1	184024203	rs11359086	TA	T	607.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.43;ReadPosRankSum=-1.150e+00;SOR=1.981;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:317,33,0
chr1	184476621	rs9633308	T	C	343.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=1.28;SOR=0.941;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:22:155,0,22
chr1	184537506	rs148172331	ACTC	A	1095.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.473e+00;DB;DP=49;ExcessHet=3.0103;FS=2.735;MQ=60.00;MQRankSum=0.00;QD=22.35;ReadPosRankSum=-2.600e-01;SOR=0.316;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,28:49:99:1104,0,877
chr1	184567463	rs10465489	G	T	290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.200e-02;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.900;SOR=0.657;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:299,0,508
chr1	184662181	rs1061508	C	T	4558.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=58;ExcessHet=3.9794;FS=6.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=0.700;SOR=1.165;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,29:58:99:878,0,741
chr1	184663537	rs9425343	A	C	4461.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=61;ExcessHet=3.9794;FS=1.096;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.642;SOR=0.587;VQSLOD=6.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,35:61:99:1030,0,696
chr1	184663581	rs9425634	T	C	3442.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=0.696;SOR=0.706;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,28:45:99:779,0,377
chr1	184663643	rs34236444	TA	T	1082.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=17;ExcessHet=3.9794;FS=1.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=1.11;SOR=1.545;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,11:17:99:292,0,135
chr1	184675814	rs1062994	G	A	7948.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178e+00;DB;DP=161;ExcessHet=3.9794;FS=1.135;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=-5.010e-01;SOR=0.594;VQSLOD=6.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,65:161:99:1443,0,2517
chr1	184677464	rs3736757	G	A	4426.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=69;ExcessHet=3.9794;FS=4.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=0.241;SOR=1.057;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,31:69:99:813,0,954
chr1	184681081	rs7525074	A	G	2151.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.11;ReadPosRankSum=0.619;SOR=0.896;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:57:229,0,57
chr1	184681802	rs4651230	T	C	495.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=2.10;SOR=0.622;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,211
chr1	184692999	rs71101940	T	TA	604.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e-01;DB;DP=22;ExcessHet=6.9897;FS=0.867;MQ=59.85;MQRankSum=-7.080e-01;QD=7.12;ReadPosRankSum=-7.240e-01;SOR=0.921;VQSLOD=0.391;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:22:99:135,0,157
chr1	184695571	rs10752941	C	T	2183.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=0.241;SOR=0.675;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:363,0,436
chr1	184706212	rs10711907	GT	G	4451.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305e+00;DB;DP=66;ExcessHet=3.9794;FS=1.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-3.920e-01;SOR=0.839;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,31:66:99:958,0,1094
chr1	184718750	rs35957626	GAAA	G	3423.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.62;ReadPosRankSum=-3.720e-01;SOR=1.006;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,16:25:99:598,0,226
chr1	184767628	rs338559	A	G	63.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.32;SOR=1.179;VQSLOD=16.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:75,9,0
chr1	184787619	.	G	T	119.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e+00;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.84;ReadPosRankSum=0.738;SOR=0.330;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:128,0,271
chr1	184800757	rs484847	T	C	618.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.36;ReadPosRankSum=0.524;SOR=2.833;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	184801065	rs487675	T	C	2381.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=54;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.835;SOR=0.708;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,22:54:99:538,0,836
chr1	184868251	rs3753575	G	A	1849.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=1.19;SOR=0.638;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:799,0,814
chr1	185061018	rs12408074	G	A	567.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=0.464;SOR=2.419;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:172,0,144
chr1	185093267	rs3036579	C	CATCTTT	79.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.43;SOR=2.303;VQSLOD=5.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	185094277	rs7523448	G	T	1862.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=28;ExcessHet=1.5490;FS=1.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=1.13;SOR=0.381;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:537,0,250
chr1	185106512	.	T	C	120.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.980e-01;DP=17;ExcessHet=3.0103;FS=2.336;MQ=60.00;MQRankSum=0.00;QD=7.07;ReadPosRankSum=0.504;SOR=0.223;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:129,0,311
chr1	185114837	rs6684586	G	A	821.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.88;ReadPosRankSum=-7.000e-01;SOR=3.014;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:178,0,130
chr1	185119794	rs1544051	C	T	1503.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.05;SOR=3.716;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:407,33,0
chr1	185119849	rs3753569	T	C	350.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.85;ReadPosRankSum=0.319;SOR=3.442;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:101,0,29
chr1	185135745	rs950327	A	G	3496.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.894e+00;DB;DP=89;ExcessHet=1.5490;FS=1.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-7.630e-01;SOR=0.559;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,38:89:99:728,0,1317
chr1	185137454	rs58809696	T	TAAATGATAGAC	4654.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=69;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.09;ReadPosRankSum=-8.960e-01;SOR=0.726;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,18:69:99:0|1:185137454_T_TAAATGATAGAC:643,0,10386:185137454
chr1	185137461	rs56166198	A	T	2740.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=69;ExcessHet=1.5490;FS=1.376;MQ=60.00;MQRankSum=0.00;QD=18.77;ReadPosRankSum=-1.031e+00;SOR=0.853;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,18:69:99:0|1:185137454_T_TAAATGATAGAC:599,0,10432:185137454
chr1	185137464	.	T	TAA	3954.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DP=70;ExcessHet=1.5490;FS=2.153;MQ=60.00;MQRankSum=0.00;QD=26.19;ReadPosRankSum=-1.262e+00;SOR=0.891;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,18:70:99:0|1:185137454_T_TAAATGATAGAC:599,0,10432:185137454
chr1	185137628	rs10797999	C	T	527.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.05;ReadPosRankSum=-4.840e-01;SOR=1.402;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:147,0,111
chr1	185143721	rs10489579	A	G	2139.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DB;DP=81;ExcessHet=3.9794;FS=5.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=1.50;SOR=0.816;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,49:81:99:1186,0,695
chr1	185149263	rs12028408	T	C	182.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-5.980e-01;SOR=1.085;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,106
chr1	185153545	rs76544683	G	GT	1562.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.220e-01;DB;DP=41;ExcessHet=3.9794;FS=3.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.842;SOR=1.103;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,19:41:99:628,0,766
chr1	185171869	rs6698109	A	G	2306.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DB;DP=98;ExcessHet=3.9794;FS=1.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=1.69;SOR=0.825;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,53:98:99:1231,0,989
chr1	185176015	rs2146328	A	G	499.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=1.52;SOR=1.329;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:86:272,0,86
chr1	185201061	rs12096987	T	C	1202.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.908;SOR=0.634;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:516,0,568
chr1	185240474	rs12041704	A	G	3989.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=118;ExcessHet=1.5490;FS=3.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.36;ReadPosRankSum=-4.600e-02;SOR=0.450;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,63:118:99:1496,0,1245
chr1	185259731	rs2378909	A	G	665.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=-7.230e-01;SOR=0.544;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:226,0,124
chr1	185267114	rs10174	A	G	1315.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=0.342;SOR=0.877;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:350,0,293
chr1	185269916	rs10798006	T	C	865.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.440e-01;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.93;ReadPosRankSum=2.19;SOR=2.093;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:198,0,252
chr1	185833565	rs7556537	A	C	2035.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=50;ExcessHet=1.5490;FS=2.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=-4.080e-01;SOR=0.331;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:728,0,828
chr1	185833880	rs41458549	A	G	840.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.820e-01;DB;DP=76;ExcessHet=3.0103;FS=5.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=1.31;SOR=0.291;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,32:76:99:849,0,1260
chr1	185834714	.	TACACACACAC	T	182.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,209
chr1	185834847	rs34137386	GTTTC	G	641.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DB;DP=47;ExcessHet=3.0103;FS=1.151;MQ=60.00;MQRankSum=0.00;QD=13.64;ReadPosRankSum=0.201;SOR=0.934;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,19:47:99:650,0,1452
chr1	185951573	.	C	CT	98.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.420e-01;DP=24;ExcessHet=3.9794;FS=1.558;MQ=60.00;MQRankSum=0.00;QD=1.72;ReadPosRankSum=1.55;SOR=0.331;VQSLOD=5.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,5:24:52:52,0,340
chr1	185964136	rs146418772	C	T	1138.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=90;ExcessHet=3.0103;FS=7.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.198;SOR=1.448;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1147,0,1123
chr1	185988567	rs11290212	CT	C	468.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.400e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=-1.003e+00;SOR=2.494;VQSLOD=6.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:197,21,0
chr1	186022032	rs10911808	T	G	1388.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=23;ExcessHet=1.5490;FS=3.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-1.220e+00;SOR=0.200;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:769,68,0
chr1	186026474	rs12129650	T	C	4716.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=111;ExcessHet=1.5490;FS=3.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=-1.532e+00;SOR=0.600;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3402,332,0
chr1	186030902	rs10737266	G	T	972.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.60;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=0.541;SOR=0.910;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:645,51,0
chr1	186031041	rs7522627	C	T	3193.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.104;DB;DP=71;ExcessHet=1.5490;FS=1.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.96;ReadPosRankSum=0.850;SOR=0.690;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2138,213,0
chr1	186039006	rs761905	C	T	987.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.852e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=-1.332e+00;SOR=0.693;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:564,42,0
chr1	186040062	rs10911811	G	C	565.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.697e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=1.19;SOR=2.303;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:350,30,0
chr1	186050417	rs10798035	A	G	2548.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=-4.260e-01;SOR=0.675;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1664,159,0
chr1	186055371	rs6425017	A	G	2681.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.47;DB;DP=56;ExcessHet=1.5490;FS=0.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=-3.040e-01;SOR=0.836;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,54:56:99:1804,116,0
chr1	186057181	rs10911816	T	C	5964.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.12;DB;DP=126;ExcessHet=1.5490;FS=4.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=-1.468e+00;SOR=0.989;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4104,378,0
chr1	186064760	rs1022671	A	T	781.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.723e+00;DB;DP=16;ExcessHet=1.5490;FS=2.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=0.667;SOR=0.209;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:465,48,0
chr1	186064781	rs2180480	A	T	880.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.841e+00;DB;DP=15;ExcessHet=1.5490;FS=2.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.260;SOR=0.208;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:490,45,0
chr1	186076291	rs6701244	C	T	520.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.881e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.298;SOR=2.093;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:369,30,0
chr1	186077463	rs1555495	A	G	1669.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.61;DB;DP=24;ExcessHet=1.5490;FS=2.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=-1.083e+00;SOR=0.323;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:988,72,0
chr1	186081918	rs7555520	C	T	2678.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.919e+00;DB;DP=64;ExcessHet=1.5490;FS=1.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-6.060e-01;SOR=0.494;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1871,192,0
chr1	186086578	rs10157742	G	A	4314.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.230e+00;DB;DP=103;ExcessHet=1.5490;FS=4.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=-1.678e+00;SOR=0.394;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3177,308,0
chr1	186089072	rs2891230	G	A	5763.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;DB;DP=143;ExcessHet=1.5490;FS=1.807;MQ=59.99;MQRankSum=-9.920e-01;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=0.239;SOR=0.568;VQSLOD=2.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4217,427,0
chr1	186089112	rs2383434	T	C	4474.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=0.4576;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=28.32;SOR=0.868;VQSLOD=3.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,158:159:99:4491,503,0
chr1	186089363	rs10752962	C	A	1364.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.498e+00;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.25;ReadPosRankSum=0.267;SOR=0.591;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:922,75,0
chr1	186092076	rs2057388	A	C	2955.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.587;DB;DP=64;ExcessHet=1.5490;FS=7.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=0.924;SOR=0.283;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2055,192,0
chr1	186092540	rs6698064	A	G	94.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=-5.240e-01;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:44,3,0
chr1	186095023	rs58905983	T	TA	194.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.720e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=58.70;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=1.61;SOR=1.179;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:146,15,0
chr1	186101539	rs10911825	A	G	1487.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.444;DB;DP=26;ExcessHet=1.5490;FS=1.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=-7.470e-01;SOR=0.519;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:801,78,0
chr1	186113931	rs3737941	T	G	3972.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.25;DB;DP=72;ExcessHet=1.5490;FS=1.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.402;SOR=0.582;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2404,216,0
chr1	186114325	rs1322374	A	G	640.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.303;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.52;ReadPosRankSum=-1.559e+00;SOR=2.200;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:477,33,0
chr1	186114441	rs12133166	G	T	2716.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.95;SOR=2.133;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2733,240,0
chr1	186114443	rs5779272	CT	C	3104.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.085;DB;DP=82;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=-1.060e+00;SOR=0.733;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2430,246,0
chr1	186123223	rs180941412	T	C	336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.17;MQRankSum=-5.240e-01;QD=22.42;ReadPosRankSum=1.78;SOR=1.112;VQSLOD=-6.620e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:345,0,208
chr1	186135236	rs6425021	G	A	677.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.75;DB;DP=22;ExcessHet=0.4576;FS=3.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=0.457;SOR=2.531;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,20:22:17:694,17,0
chr1	186136156	rs181933883	T	C	588.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-02;DB;DP=42;ExcessHet=3.0103;FS=2.799;MQ=60.00;MQRankSum=0.00;QD=14.71;ReadPosRankSum=-2.280e-01;SOR=1.264;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:42:99:597,0,542
chr1	186136289	rs7549613	T	C	380.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.55;SOR=2.494;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:397,33,0
chr1	186140742	rs34112316	C	CTA	424.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=4.804;VQSLOD=6.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:441,30,0
chr1	186141301	rs4651302	G	A	4250.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.839e+00;DB;DP=101;ExcessHet=1.5490;FS=3.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=1.29;SOR=0.453;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2968,262,0
chr1	186151493	rs16825040	C	G	1453.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=1.426;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1470,144,0
chr1	186265948	rs1293987	T	A	2947.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e+00;DB;DP=74;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=-1.032e+00;SOR=0.649;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:978,0,1042
chr1	186266293	rs1293988	A	G	52.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.17;SOR=2.303;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
chr1	186270894	rs1547084	A	G	1723.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=77;ExcessHet=3.9794;FS=5.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-9.700e-02;SOR=1.155;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1036,0,828
chr1	186273994	rs2273779	C	T	1433.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=53;ExcessHet=3.9794;FS=0.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-7.580e-01;SOR=0.802;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:548,0,715
chr1	186274133	rs6425024	C	T	573.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=1.02;SOR=0.976;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:199,0,231
chr1	186274157	rs6425025	G	T	463.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=-3.190e-01;SOR=1.292;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:99:0|1:186274157_G_T:246,0,104:186274157
chr1	186274159	rs2273778	G	A	463.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=-3.190e-01;SOR=1.179;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:99:0|1:186274157_G_T:246,0,104:186274157
chr1	186274175	rs2273777	G	A	235.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=-6.740e-01;SOR=0.836;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:24:183,0,24
chr1	186275760	rs16825150	G	A	3021.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349e+00;DB;DP=96;ExcessHet=3.9794;FS=1.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-3.740e-01;SOR=0.850;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1385,0,1341
chr1	186277088	rs68069719	G	C	100912.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=1078;ExcessHet=3.0103;FS=0.000;MQ=59.66;QD=31.94;SOR=0.765;VQSLOD=2.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1078:1078:99:33236,3234,0
chr1	186277989	rs3737940	A	G	1531.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=54;ExcessHet=3.9794;FS=13.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.194;SOR=0.920;VQSLOD=14.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:733,0,688
chr1	186281696	rs7756	T	G	411.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.07;SOR=1.085;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	186284023	rs76559138	G	A	332.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.753;SOR=0.387;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:57:57,0,215
chr1	186286782	rs34585917	A	G	375.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-6.130e-01;SOR=1.022;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:157,0,143
chr1	186291339	rs6425026	T	C	653.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=5.784;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	186291941	rs3835510	AAC	A	77.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=2.303;VQSLOD=6.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	186295021	rs76057663	A	G	2094.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=60;ExcessHet=3.9794;FS=3.474;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=0.610;SOR=1.028;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,33:60:99:893,0,611
chr1	186295524	rs28715477	C	T	347.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=1.07;SOR=0.223;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:132,0,315
chr1	186296926	rs11582844	T	C	274.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=1.25;SOR=0.693;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:59:104,0,59
chr1	186305914	rs12085497	A	C	873.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=12;ExcessHet=3.9794;FS=3.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=0.259;SOR=0.275;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:83:347,0,83
chr1	186305993	rs16825183	T	C	332.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.137;SOR=0.735;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:93:93,0,143
chr1	186307064	rs16825185	T	G	596.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=15;ExcessHet=3.9794;FS=3.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.635;SOR=0.152;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:131,0,397
chr1	186312913	rs3753567	T	C	131.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=0.431;SOR=1.329;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:140,0,60
chr1	186313249	rs2950829	A	G	4495.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=2.000;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1062,93,0
chr1	186313293	rs76557279	G	A	545.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-1.280e+00;SOR=0.675;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:251,0,301
chr1	186313830	rs16825201	A	G	267.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=1.15;SOR=0.593;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:92:181,0,92
chr1	186314949	rs2272412	C	T	585.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094e+00;DB;DP=9;ExcessHet=3.9794;FS=2.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.261;SOR=1.358;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:194,0,107
chr1	186316488	rs3753565	C	T	2465.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DB;DP=114;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=1.26;SOR=0.722;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,45:114:99:1039,0,1673
chr1	186316656	rs3753564	G	C	1800.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.36;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=1.67;SOR=0.748;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,24:37:99:834,0,365
chr1	186319580	rs6667940	C	A	629.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=1.49;SOR=0.804;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:233,0,272
chr1	186321242	rs61744267	C	T	1591.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.470e-01;DB;DP=52;ExcessHet=3.9794;FS=9.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-6.340e-01;SOR=0.225;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,24:52:99:635,0,715
chr1	186323067	rs72711793	A	T	493.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-1.840e-01;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:502,0,414
chr1	186327536	rs2383476	G	A	460.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.57;SOR=2.833;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:390,30,0
chr1	186329235	rs12093440	G	C	655.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=9;ExcessHet=3.9794;FS=1.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=1.48;SOR=1.179;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:192,0,103
chr1	186329257	rs878041	C	A	1106.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=1.302;VQSLOD=18.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:375,27,0
chr1	186329869	rs2026187	C	G	5804.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=0.4576;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.07;SOR=1.731;VQSLOD=5.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2633,249,0
chr1	186330643	rs10494586	T	C	1554.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.01;SOR=4.565;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:833,66,0
chr1	186330700	rs36117514	A	AG	1579.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e-01;DB;DP=50;ExcessHet=3.9794;FS=7.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.181;SOR=1.689;VQSLOD=6.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,23:50:99:747,0,781
chr1	186339878	rs3124814	C	A	353.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=4.804;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr1	186342323	rs7514615	C	G	174.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=1.04;SOR=0.892;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr1	186344876	rs3831933	A	AG	304.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743e+00;DB;DP=15;ExcessHet=3.9794;FS=4.960;MQ=59.48;MQRankSum=0.524;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=-5.140e-01;SOR=0.050;VQSLOD=-9.790e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:137,0,230
chr1	186352347	rs4651309	A	T	693.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490e+00;DB;DP=19;ExcessHet=3.9794;FS=4.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=1.17;SOR=0.197;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:351,0,241
chr1	186357523	rs1290390	T	C	1759.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.20;SOR=1.791;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:604,57,0
chr1	186358588	rs1003127	A	G	241.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.209e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.04;ReadPosRankSum=0.712;SOR=0.188;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:99:99,0,477
chr1	186363119	rs12084264	C	G	1816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.65;SOR=0.703;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,40:73:99:1011,0,606
chr1	186368338	rs59324641	A	AT	713.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.730e-01;DB;DP=63;ExcessHet=6.9897;FS=3.689;MQ=59.95;MQRankSum=0.00;QD=5.25;ReadPosRankSum=-4.730e-01;SOR=1.122;VQSLOD=5.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,17:63:99:214,0,605
chr1	186648197	rs5277	C	G	856.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;DB;DP=25;ExcessHet=3.9794;FS=2.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=1.47;SOR=0.307;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:375,0,268
chr1	186649221	rs2745557	A	G	4219.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.480e-01;DB;DP=48;ExcessHet=3.0103;FS=3.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=-1.969e+00;SOR=0.974;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1660,144,0
chr1	186862512	rs7542180	G	A	364.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=-2.830e-01;SOR=1.473;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	186863050	.	CAA	CA,C	214.28	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.431;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.60;ReadPosRankSum=0.703;SOR=1.371;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,3:6:56:158,73,57,64,0,56
chr1	186901738	rs12720584	TTCTTCTTTTAAAA	T	2209.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.48;ReadPosRankSum=0.165;SOR=1.085;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1432,96,0
chr1	186915585	rs12720622	G	GT	103.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.80;ReadPosRankSum=0.319;SOR=1.981;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:3:32,3,0
chr1	186915663	rs10911965	C	A	923.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.57;SOR=6.091;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:18:1|1:186915663_C_A:262,18,0:186915663
chr1	186915664	rs10911966	A	G	923.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.35;SOR=6.184;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:186915663_C_A:262,18,0:186915663
chr1	186919732	rs4650709	A	T	2791.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=3.884;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1002,81,0
chr1	186919993	rs969357	G	A	4013.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=3.086;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1434,125,0
chr1	186925168	rs5007825	A	G	1462.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=28.09;SOR=4.461;VQSLOD=4.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:536,45,0
chr1	186925194	rs5007824	T	C	2695.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=30.51;SOR=4.680;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:891,66,0
chr1	186925552	rs2307199	T	C	4321.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=2.874;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1162,90,0
chr1	186925636	rs7547623	T	G	1446.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.81;SOR=4.351;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
chr1	186934871	rs6695108	G	A	1387.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=7.168;VQSLOD=24.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:407,30,0
chr1	186946912	rs2307198	G	A	5839.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=1.868;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2222,207,0
chr1	187610537	rs10159161	A	G	909.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.930e-01;DB;DP=57;ExcessHet=3.0103;FS=2.243;MQ=60.00;MQRankSum=0.00;QD=15.95;ReadPosRankSum=0.667;SOR=0.442;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,34:57:99:0|1:187610537_A_G:918,0,596:187610537
chr1	187610538	rs10157977	C	G	4262.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.46;SOR=0.822;VQSLOD=17.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,56:56:99:1|1:187610537_A_G:2237,168,0:187610537
chr1	187610698	rs10157987	C	A	5945.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=0.4576;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.63;SOR=1.179;VQSLOD=5.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2704,260,0
chr1	187610777	rs61822202	C	G	5652.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=142;ExcessHet=1.5490;FS=4.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=0.390;SOR=0.464;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,55:142:99:1353,0,2224
chr1	187610852	rs10159182	A	C	8323.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.100e-01;DB;DP=163;ExcessHet=0.4576;FS=3.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.38;ReadPosRankSum=0.312;SOR=0.862;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:4820,488,0
chr1	190068427	rs199870835	TACACAC	T	332.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.29;ReadPosRankSum=-9.670e-01;SOR=3.258;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:11:81,0,11
chr1	192128183	rs4454527	G	A	2632.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.62;ReadPosRankSum=1.77;SOR=0.716;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:308,0,285
chr1	192129370	rs4329489	G	A	1353.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.77;ReadPosRankSum=0.071;SOR=0.665;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:220,0,172
chr1	192544754	rs11420006	C	CT	257.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.703;SOR=1.230;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:56:56,0,115
chr1	192544795	rs2984920	A	G	970.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=0.500;SOR=1.248;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:227,0,185
chr1	192545099	rs7535818	G	A	829.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=14;ExcessHet=6.9897;FS=1.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.001e+00;SOR=0.368;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:238,0,230
chr1	192613481	rs373283464	G	A	494.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.590e-01;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.69;ReadPosRankSum=0.151;SOR=0.627;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:503,0,632
chr1	192778159	rs12130714	A	T	1902.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.20;SOR=3.098;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1919,162,0
chr1	192780498	rs17647363	A	G	802.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.45;SOR=3.160;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:819,63,0
chr1	192991920	rs36034206	T	G	886.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.18;SOR=4.615;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:192991920_T_G:180,12,0:192991920
chr1	192991921	rs11385250	G	GT	886.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.38;SOR=4.615;VQSLOD=6.40;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:192991920_T_G:180,12,0:192991920
chr1	192991924	rs34849704	A	C	886.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.00;SOR=4.615;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:192991920_T_G:180,12,0:192991920
chr1	193018534	rs6670714	T	C	252.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.76;SOR=1.609;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr1	193028121	rs4657842	A	T	223.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-5.660e-01;SOR=1.022;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr1	193039658	.	CT	C	146.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DP=32;ExcessHet=3.9794;FS=4.144;MQ=60.00;MQRankSum=0.00;QD=2.25;ReadPosRankSum=-1.400e-02;SOR=1.193;VQSLOD=4.83;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,8:32:99:111,0,484
chr1	193051685	rs2275444	G	A	2796.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.19;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=-1.411e+00;SOR=0.844;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:890,87,0
chr1	193051893	.	AT	A	174.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DP=15;ExcessHet=3.9794;FS=1.619;MQ=60.00;MQRankSum=0.00;QD=6.45;ReadPosRankSum=0.114;SOR=0.368;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:15:96:116,0,96
chr1	193054088	rs72740218	C	T	1890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460e-01;DB;DP=57;ExcessHet=3.9794;FS=3.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.36;SOR=0.780;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:724,0,845
chr1	193054154	rs10921309	G	A	637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=61;ExcessHet=3.0103;FS=1.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.697;SOR=0.928;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,25:61:99:646,0,878
chr1	193074371	rs10801175	A	G	861.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.609e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=-6.320e-01;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:348,30,0
chr1	193074651	rs10921310	T	A	10478.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.054;DB;DP=132;ExcessHet=3.0103;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=1.61;SOR=0.623;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4227,392,0
chr1	193075108	rs912071	C	T	244.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=3.912;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:193075108_C_T:173,12,0:193075108
chr1	193075118	rs3079948	C	CAA	244.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=3.912;VQSLOD=6.38;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:193075108_C_T:173,12,0:193075108
chr1	193090865	rs10737621	C	A	7921.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.438e+00;DB;DP=130;ExcessHet=3.9794;FS=7.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=1.34;SOR=1.179;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4162,389,0
chr1	193094375	rs4466634	T	C	2525.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.38;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.716;SOR=0.688;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1185,111,0
chr1	193104827	rs10921318	G	A	874.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=1.86;SOR=0.892;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:281,21,0
chr1	193111228	rs147167392	TGA	T	107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184e+00;DB;DP=44;ExcessHet=3.0103;FS=7.621;MQ=60.00;MQRankSum=0.00;QD=2.44;ReadPosRankSum=0.562;SOR=0.051;VQSLOD=3.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,7:44:99:116,0,1201
chr1	193202001	rs10921328	C	G	541.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=6;ExcessHet=3.9794;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=0.732;SOR=2.712;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:268,18,0
chr1	193205272	rs3738244	T	A	5006.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.312e+00;DB;DP=75;ExcessHet=3.9794;FS=4.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=1.90;SOR=1.034;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2318,225,0
chr1	196227526	rs977157	A	G	7741.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=1.343;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2581,237,0
chr1	196242764	rs558895	T	G	3556.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.53;SOR=2.517;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:977,86,0
chr1	196251522	rs2477357	T	C	1507.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=1.880;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:723,54,0
chr1	196254970	rs2477360	C	T	1935.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.05;SOR=4.493;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:601,45,0
chr1	196311513	rs6658788	G	A	665.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.27;ReadPosRankSum=0.700;SOR=2.303;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:137,0,182
chr1	196398619	rs1538684	T	C	1401.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196e+00;DB;DP=15;ExcessHet=3.9794;FS=1.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=-2.090e-01;SOR=1.382;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:164,0,289
chr1	196398974	rs12121250	T	A	1005.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=0.619;SOR=0.730;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:55:179,0,55
chr1	196461513	rs4607811	C	T	3493.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=5.307;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:815,63,0
chr1	196551385	rs7548553	T	G	305.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=-5.240e-01;SOR=0.473;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr1	196620917	rs3753394	C	T	648.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-1.630e-01;SOR=0.735;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:258,0,131
chr1	196654324	rs1061147	A	C	8096.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.76;DB;DP=146;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=-2.140e-01;SOR=0.691;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,70:146:99:1561,0,1922
chr1	196658497	rs482934	G	T	1886.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.009e+00;DB;DP=18;ExcessHet=3.9794;FS=5.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=0.178;SOR=0.162;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:247,0,283
chr1	196658905	rs12029785	G	A	889.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=12;ExcessHet=3.9794;FS=2.823;MQ=59.67;MQRankSum=0.502;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.42;ReadPosRankSum=1.000e-03;SOR=0.232;VQSLOD=0.157;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:204,0,195
chr1	196659237	rs1061170	C	T	6709.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=86;ExcessHet=3.9794;FS=0.908;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.39;ReadPosRankSum=-2.230e-01;SOR=0.615;VQSLOD=6.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,32:86:99:752,0,1431
chr1	196682947	rs2274700	G	A	1336.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DB;DP=64;ExcessHet=3.9794;FS=1.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.91;ReadPosRankSum=1.36;SOR=0.813;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,26:64:99:601,0,978
chr1	196684574	rs6664877	C	T	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=1.35;SOR=0.859;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,6:11:99:0|1:196684574_C_T:237,0,320:196684574
chr1	196684575	rs6677460	A	G	375.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=1.35;SOR=0.560;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,6:11:99:0|1:196684574_C_T:237,0,320:196684574
chr1	196684625	rs203674	G	T	2516.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=1.41;SOR=0.896;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:289,0,487
chr1	196705926	rs375046	C	A	549.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=0.967;SOR=0.569;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:27:72,0,27
chr1	196710916	rs16840522	T	C	198.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DB;DP=10;ExcessHet=3.9794;FS=2.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=-4.440e-01;SOR=0.175;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:86:86,0,222
chr1	196712875	rs464798	C	T	134.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=45.83;MQRankSum=-2.450e+00;QD=16.78;ReadPosRankSum=2.19;SOR=0.693;VQSLOD=-3.812e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:143,0,149
chr1	196715335	rs34231058	G	A	262.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=13;ExcessHet=3.0103;FS=3.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=0.422;SOR=0.141;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:271,0,167
chr1	196874356	rs10801578	G	T	9099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=31.38;SOR=1.024;VQSLOD=4.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2701,258,0
chr1	196876458	rs7417769	A	G	8330.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=144;ExcessHet=1.5490;FS=1.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=-1.846e+00;SOR=0.854;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,72:144:99:2008,0,1890
chr1	196883372	rs72468003	G	A	328.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=1.83;SOR=1.329;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,145
chr1	196887181	rs1971579	T	G	1080.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=15;ExcessHet=1.5490;FS=9.777;MQ=59.43;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=1.70;SOR=3.841;VQSLOD=-2.229e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,2:15:43:43,0,422
chr1	196887274	rs3795341	G	A	1472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674e+00;DB;DP=63;ExcessHet=3.9794;FS=2.387;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.702;SOR=0.927;VQSLOD=6.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,22:63:99:512,0,1195
chr1	196887457	rs10494745	G	A	2506.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e-01;DB;DP=169;ExcessHet=3.0103;FS=2.724;MQ=59.97;MQRankSum=1.16;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-7.190e-01;SOR=0.937;VQSLOD=2.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,96:169:99:2515,0,1747
chr1	196920178	rs3828032	C	T	2828.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270e+00;DB;DP=34;ExcessHet=1.5490;FS=6.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=0.910;SOR=0.200;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:533,0,429
chr1	196926956	rs3748556	C	T	824.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.45;ReadPosRankSum=-5.240e-01;SOR=2.226;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:88:88,0,260
chr1	196926973	rs3748555	C	A	1501.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=18;ExcessHet=1.5490;FS=6.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=-4.220e-01;SOR=3.767;VQSLOD=14.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:196,0,384
chr1	196946869	rs3748557	T	A	1856.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DB;DP=150;ExcessHet=3.0103;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=1.14;SOR=0.623;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,77:150:99:1865,0,1694
chr1	196947030	rs12755054	T	C	363.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.930;SOR=0.693;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:195,0,131
chr1	196952268	rs45489701	C	T	1136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=118;ExcessHet=3.0103;FS=1.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-6.000e-02;SOR=0.837;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,49:118:99:1145,0,1656
chr1	196952498	rs1759016	C	T	170.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=1.65;SOR=0.892;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:36:71,0,36
chr1	197008365	rs698859	C	T	295.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=0.061;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,68
chr1	197008597	rs5990	A	C	2663.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=60;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-2.090e-01;SOR=0.686;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,26:60:99:545,0,894
chr1	197009798	rs5998	A	G	2287.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=64;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-5.250e-01;SOR=0.723;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:805,0,850
chr1	197026672	rs1759009	A	G	1514.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.49;SOR=3.716;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:366,30,0
chr1	197029345	rs1332661	G	A	314.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=6.9897;FS=3.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-4.310e-01;SOR=0.126;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,147
chr1	197030201	rs5997	T	C	4075.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.052e+00;DB;DP=39;ExcessHet=3.0103;FS=2.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=-2.820e-01;SOR=0.502;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1259,117,0
chr1	197030237	rs17549277	CT	C	495.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-2.530e-01;SOR=0.302;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:104,0,102
chr1	197030317	rs1615413	A	G	129.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=1.04;SOR=0.941;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	197031021	rs6003	C	T	4370.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=51;ExcessHet=3.0103;FS=5.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=-1.864e+00;SOR=0.348;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1600,153,0
chr1	197032345	rs5996	C	G	294.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.76;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:111,0,33
chr1	197053373	rs12677	G	A	3167.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.99;DB;DP=38;ExcessHet=3.0103;FS=3.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-3.000e-02;SOR=0.380;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1142,114,0
chr1	197053561	rs200839523	T	TA	673.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DB;DP=31;ExcessHet=3.9794;FS=2.958;MQ=59.93;MQRankSum=0.00;QD=9.62;ReadPosRankSum=0.874;SOR=1.101;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,17:31:99:280,0,240
chr1	197055782	rs10733087	T	C	1353.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.270e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=-7.900e-02;SOR=3.912;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:526,39,0
chr1	197055925	rs10754213	T	C	6869.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=-1.575e+00;SOR=0.718;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2338,238,0
chr1	197059878	rs4915315	G	A	1505.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.23;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.46;ReadPosRankSum=-1.637e+00;SOR=2.170;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:566,45,0
chr1	197059892	rs10754214	A	G	2047.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.596e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.57;ReadPosRankSum=-1.089e+00;SOR=0.601;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:829,63,0
chr1	197059928	rs4915316	A	G	3303.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.85;DB;DP=36;ExcessHet=3.0103;FS=5.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.59;ReadPosRankSum=0.380;SOR=0.191;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1388,108,0
chr1	197063352	rs41304071	C	T	2110.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640e-01;DB;DP=61;ExcessHet=3.9794;FS=0.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-2.560e-01;SOR=0.577;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,36:61:99:940,0,635
chr1	197070442	rs3762271	G	T	1660.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.600e-02;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-5.270e-01;SOR=0.735;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,34:67:99:962,0,940
chr1	197070697	rs41310927	T	C	6202.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.950e-01;DB;DP=143;ExcessHet=3.9794;FS=4.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=0.106;SOR=0.952;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,84:143:99:0|1:197070697_T_C:3393,0,3420:197070697
chr1	197070707	rs41308365	G	A	6340.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=150;ExcessHet=3.9794;FS=4.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=0.326;SOR=0.934;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,89:150:99:0|1:197070697_T_C:3465,0,3446:197070697
chr1	197070815	rs1412640	T	C	16563.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.87;DB;DP=180;ExcessHet=3.0103;FS=0.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-1.416e+00;SOR=0.609;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5837,539,0
chr1	197070901	rs964201	A	G	17285.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.50;SOR=1.063;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5187,480,0
chr1	197072420	rs41310925	T	C	3063.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=85;ExcessHet=3.9794;FS=0.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.502;SOR=0.748;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,31:85:99:888,0,1400
chr1	197073932	rs2878749	T	C	3057.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=123;ExcessHet=3.9794;FS=0.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=1.37;SOR=0.637;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,53:123:99:1335,0,1653
chr1	197091537	rs4915337	A	T	6916.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=72;ExcessHet=3.0103;FS=1.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=0.193;SOR=0.908;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,71:72:99:2250,205,0
chr1	197091808	rs61819088	T	C	660.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=0.660;SOR=0.402;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:352,0,191
chr1	197093098	rs6685259	A	T	606.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=5.670;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr1	197094030	rs6676084	C	T	2683.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DB;DP=50;ExcessHet=6.9897;FS=5.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-6.340e-01;SOR=0.409;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,30:50:99:788,0,472
chr1	197097473	.	G	GA	282.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.00;SOR=2.200;VQSLOD=6.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:11:110,0,11
chr1	197098143	rs6695300	G	C	978.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.30;SOR=5.136;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:253,21,0
chr1	197101303	rs3737110	C	A	58.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.524;SOR=1.609;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,74
chr1	197101621	rs3737111	T	C	592.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.936;SOR=0.922;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:72:198,0,72
chr1	197104149	rs35659894	TA	T	731.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.581;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=0.565;SOR=0.914;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:321,27,0
chr1	197108693	rs10737687	C	T	614.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.765;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.73;ReadPosRankSum=-2.310e-01;SOR=0.693;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	197109042	rs1332663	C	T	1797.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.690e+00;DB;DP=17;ExcessHet=3.0103;FS=6.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.305;SOR=1.910;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:602,51,0
chr1	197112533	rs6677082	G	A	13123.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.23;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.17;ReadPosRankSum=1.15;SOR=0.700;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:5060,464,0
chr1	197113073	rs1571964	G	A	4193.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.215e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=0.270;SOR=0.651;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1384,120,0
chr1	197141243	rs6428389	A	C	3392.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=40;ExcessHet=3.0103;FS=1.817;MQ=60.00;MQRankSum=0.00;QD=22.47;ReadPosRankSum=-3.180e-01;SOR=0.504;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1143,120,0
chr1	197144383	rs10801593	T	G	1329.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.372e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=-1.337e+00;SOR=2.780;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:385,30,0
chr1	197147471	rs61819118	A	C	676.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.637;SOR=1.002;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:392,0,231
chr1	197147800	rs61819119	T	A	255.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=0.366;SOR=1.609;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:73,0,31
chr1	197297540	rs12042179	A	T	380.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=1.68;SOR=0.446;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:149,0,441
chr1	197298373	rs580067	T	C	699.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=5.994;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	197316239	rs1337168	C	G	288.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=4.174;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr1	197316435	rs1337167	T	C	7728.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.920e-01;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.60;ReadPosRankSum=-2.940e-01;SOR=0.728;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2747,253,0
chr1	197325908	rs2786098	T	G	4829.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.080e-01;DB;DP=47;ExcessHet=3.0103;FS=2.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=0.561;SOR=0.441;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1411,141,0
chr1	197390368	rs3902057	A	G	10252.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=0.753;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3003,270,0
chr1	197398086	rs7534863	A	G	1661.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DB;DP=51;ExcessHet=3.9794;FS=0.748;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.15;SOR=0.607;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,34:51:99:963,0,401
chr1	197404954	rs927511	T	C	1296.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.56;SOR=6.869;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:308,21,0
chr1	197407942	rs980371	A	G	1190.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.32;SOR=4.680;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:358,30,0
chr1	197446702	rs1135810	G	T	1789.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.274;SOR=0.635;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,23:65:99:609,0,1120
chr1	197479378	rs1421389	C	A	585.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=5.421;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr1	197480927	rs12142127	C	T	1037.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DB;DP=87;ExcessHet=3.0103;FS=1.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-6.000e-02;SOR=1.002;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1046,0,1166
chr1	197482167	rs2013617	C	G	1310.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=6.994;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:219,18,0
chr1	197510025	rs3902061	G	T	3433.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.80;SOR=3.454;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:965,87,0
chr1	197510299	rs3850628	G	A	1946.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=5.018;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:407,33,0
chr1	197515253	rs11276673	ATGTTCAG	A	1149.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.08;SOR=5.136;VQSLOD=3.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:396,27,0
chr1	197515715	rs4303099	G	A	1393.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.29;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.18;ReadPosRankSum=0.295;SOR=3.365;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	197515777	rs4316386	A	T	3321.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.570e-01;DB;DP=24;ExcessHet=3.0103;FS=5.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=1.15;SOR=0.283;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:728,72,0
chr1	197515981	rs10922249	T	C	291.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=2.00;SOR=0.512;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:300,0,355
chr1	197576307	rs11411505	A	AT	5478.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.450e-01;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=1.59;SOR=0.992;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2114,177,0
chr1	197580898	.	T	C	359.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.95;ReadPosRankSum=-2.331e+00;SOR=1.473;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:368,0,156
chr1	197704717	rs17641524	C	T	2078.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240e+00;DB;DP=154;ExcessHet=3.0103;FS=0.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-1.359e+00;SOR=0.637;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,84:154:99:2087,0,1722
chr1	197741951	rs2477067	C	A	5298.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=27.31;SOR=1.345;VQSLOD=4.13;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1316,150,0
chr1	197742171	rs2488396	C	T	2216.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.98;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.67;ReadPosRankSum=0.924;SOR=1.638;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:668,54,0
chr1	197744098	rs117405403	G	C	1580.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.13;DB;DP=18;ExcessHet=3.9794;FS=1.803;MQ=59.91;MQRankSum=0.00;QD=24.70;ReadPosRankSum=1.36;SOR=0.417;VQSLOD=5.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,11:18:99:339,0,200
chr1	197874949	rs2270763	T	C	3873.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668e+00;DB;DP=93;ExcessHet=1.5490;FS=0.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=-3.580e-01;SOR=0.773;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,50:93:99:1089,0,992
chr1	197876533	rs1546244	C	A	1332.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.89;SOR=3.737;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:389,30,0
chr1	197886220	rs5779892	A	ATG	158.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=0.319;SOR=0.804;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:66,6,0
chr1	197890422	rs12122995	C	G	7992.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=2.600;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2696,228,0
chr1	197890802	rs13376365	T	C	13819.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.418;DB;DP=299;ExcessHet=1.5490;FS=0.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=0.291;SOR=0.576;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,299:299:99:9822,898,0
chr1	197897943	rs35606364	CTG	C	122.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.51;SOR=2.833;VQSLOD=6.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	197898023	rs10664707	C	CA	409.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.44;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=1.37;SOR=2.093;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:3:162,0,3
chr1	198492454	rs1055160	T	C	2129.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=1.30;SOR=0.784;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,40:62:99:1118,0,497
chr1	198677420	rs2274368	T	A	327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-3.710e-01;SOR=0.793;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:336,0,495
chr1	198679093	rs10753834	G	T	623.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.817e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=0.525;SOR=1.302;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	198687114	rs34800651	AC	A	234.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=0.480;SOR=0.446;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:198687114_AC_A:243,0,188:198687114
chr1	198687125	rs12407767	A	G	299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=0.409;SOR=0.495;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:198687114_AC_A:308,0,216:198687114
chr1	198701289	rs1932433	T	C	169.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=1.38;SOR=0.892;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:71,0,70
chr1	198717218	.	GT	G	2245.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030e-01;DP=52;ExcessHet=6.9897;FS=3.237;MQ=60.00;MQRankSum=0.00;QD=17.01;ReadPosRankSum=0.337;SOR=0.440;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,29:52:99:521,0,369
chr1	199996685	rs2816948	C	G	226.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:81,0,33
chr1	199996821	rs59429274	AT	A	1040.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DB;DP=26;ExcessHet=6.9897;FS=4.553;MQ=60.00;MQRankSum=0.00;QD=14.26;ReadPosRankSum=-2.222e+00;SOR=0.281;VQSLOD=4.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,20:26:91:486,0,91
chr1	199998281	rs112399233	G	T	11399.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DB;DP=428;ExcessHet=3.9794;FS=0.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-8.580e-01;SOR=0.786;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:201,227:428:99:5572,0,4775
chr1	199998491	rs2816950	C	G	547.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.00;SOR=0.504;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:147,0,114
chr1	200008941	rs113762480	G	T	3629.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-02;DB;DP=106;ExcessHet=3.9794;FS=0.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.074;SOR=0.640;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,65:106:99:1517,0,1069
chr1	200014560	rs41300849	C	T	802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.845;SOR=0.539;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,29:49:99:811,0,562
chr1	200014762	rs2817008	A	G	3684.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=42;ExcessHet=3.9794;FS=6.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.50;ReadPosRankSum=0.817;SOR=0.271;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,29:42:99:0|1:200014762_A_G:1123,0,824:200014762
chr1	200014766	rs2363454	G	T	1935.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=38;ExcessHet=3.9794;FS=4.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=0.467;SOR=0.265;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,27:38:99:0|1:200014762_A_G:1105,0,795:200014762
chr1	200014859	rs2363455	G	A	189.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=1.83;SOR=0.569;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:138,0,109
chr1	200080462	rs111949351	A	AT	571.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.780e-01;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.53;ReadPosRankSum=1.62;SOR=0.223;VQSLOD=5.23;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,14:15:33:1|1:200080462_A_AT:588,33,0:200080462
chr1	200080464	.	C	A	777.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.41;ReadPosRankSum=0.070;SOR=0.571;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,15:16:33:1|1:200080462_A_AT:588,33,0:200080462
chr1	200080614	rs2737672	T	G	324.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.87;SOR=4.407;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	200089872	rs10494808	C	T	1572.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.70;SOR=3.109;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1589,129,0
chr1	200090120	rs3762398	G	A	801.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893e+00;DB;DP=82;ExcessHet=3.0103;FS=0.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=2.44;SOR=0.549;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,33:82:99:810,0,1394
chr1	200090219	rs3762397	C	T	593.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.56;SOR=4.174;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:610,48,0
chr1	200143064	rs3034024	CTTTT	CTTT,C	1408.43	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.210e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.60;MQRankSum=0.00;QD=25.15;ReadPosRankSum=1.13;SOR=0.941;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,8,7:18:99:367,216,243,111,0,370
chr1	200143281	rs1060060	C	T	2005.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=81;ExcessHet=3.9794;FS=2.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-3.750e-01;SOR=0.864;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,38:81:99:934,0,1016
chr1	200143442	rs1060061	T	C	840.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=0.734;SOR=1.483;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:99:123,0,402
chr1	200182654	rs6427805	T	C	4187.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.04;DB;DP=56;ExcessHet=3.0103;FS=2.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.98;ReadPosRankSum=0.535;SOR=1.145;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2054,168,0
chr1	200182664	rs6427806	C	T	2927.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=59;ExcessHet=3.9794;FS=8.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=0.077;SOR=1.412;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,25:59:99:679,0,801
chr1	200182721	rs61826220	G	C	1425.47	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e-01;DB;DP=61;ExcessHet=3.9794;FS=6.556;MQ=60.00;MQRankSum=0.00;QD=10.04;ReadPosRankSum=1.76;SOR=1.230;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,23:61:99:953,0,1510
chr1	200182725	rs76632737	G	A	1423.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=62;ExcessHet=1.5490;FS=4.127;MQ=60.00;MQRankSum=0.00;QD=15.14;ReadPosRankSum=1.88;SOR=1.238;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,23:62:99:944,0,1636
chr1	200182732	rs116503230	A	G	1215.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=2.68;SOR=0.746;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,23:62:99:811,0,1604
chr1	200182733	rs80112494	C	T	1738.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.75;ReadPosRankSum=2.68;SOR=0.708;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:1125,0,1582
chr1	200182834	rs12028402	A	G	6630.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.564e+00;DB;DP=108;ExcessHet=3.9794;FS=5.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=0.949;SOR=0.450;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,58:108:99:1550,0,1524
chr1	200183398	rs10919847	C	A	4777.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DB;DP=103;ExcessHet=3.9794;FS=0.965;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=0.476;SOR=0.630;VQSLOD=6.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,54:103:99:1306,0,1289
chr1	200183460	rs10919848	C	T	2988.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246e+00;DB;DP=60;ExcessHet=3.9794;FS=2.491;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=0.371;SOR=0.979;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,34:60:99:988,0,866
chr1	200311514	rs2790111	T	G	164.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.27;SOR=3.258;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr1	200311674	rs2790110	C	A	889.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410e-01;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.80;ReadPosRankSum=-4.330e-01;SOR=0.576;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:170,0,204
chr1	200311868	rs2790109	C	G	3261.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.764;DB;DP=47;ExcessHet=3.9794;FS=4.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-1.135e+00;SOR=0.960;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1613,141,0
chr1	200312546	.	CA	C	1275.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.977;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.26;ReadPosRankSum=1.74;SOR=2.551;VQSLOD=4.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,15:18:28:385,28,0
chr1	200338053	rs80323082	T	C	216.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=-1.492e+00;SOR=0.141;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:225,0,284
chr1	200342046	rs6677545	A	C	240.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.886e+00;DB;DP=19;ExcessHet=3.0103;FS=13.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=1.20;SOR=0.017;VQSLOD=15.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:249,0,276
chr1	200522351	rs10800708	A	T	326.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=0.674;SOR=2.494;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:74,0,69
chr1	200522566	rs12120084	G	C	2351.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=81;ExcessHet=3.9794;FS=1.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-8.200e-02;SOR=0.532;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1022,0,1066
chr1	200523514	rs7548174	A	G	1005.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;DB;DP=12;ExcessHet=1.5490;FS=3.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=1.24;SOR=2.584;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:92:243,0,92
chr1	200534248	rs7543730	C	T	5449.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696e+00;DB;DP=139;ExcessHet=1.5490;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=-6.170e-01;SOR=0.540;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,69:139:99:1549,0,1732
chr1	200538962	rs73070685	G	A	61.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-02;DB;DP=24;ExcessHet=3.0103;FS=4.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.55;ReadPosRankSum=-1.672e+00;SOR=1.957;VQSLOD=19.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,5:24:70:70,0,478
chr1	200544650	rs35571944	TAC	T	1066.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.260e-01;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=0.570;SOR=0.693;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,9:20:99:258,0,326
chr1	200549590	rs10753877	T	C	805.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=11;ExcessHet=1.5490;FS=2.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=-1.104e+00;SOR=2.066;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:146,0,179
chr1	200555482	rs6691410	C	T	531.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.224;SOR=0.760;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:220,0,223
chr1	200558363	rs6665951	T	C	4941.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.610e-01;DB;DP=109;ExcessHet=1.5490;FS=0.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=0.911;SOR=0.634;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,58:109:99:1380,0,1343
chr1	200558650	rs6677626	A	AAATATCACTAGTCAAACTT	643.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=-6.740e-01;SOR=2.833;VQSLOD=6.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:99:120,0,110
chr1	200562494	rs6667081	G	A	74.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.35;SOR=2.303;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	200567596	rs2809358	T	G	1155.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662e+00;DB;DP=23;ExcessHet=1.5490;FS=5.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=0.308;SOR=3.442;VQSLOD=16.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:357,0,400
chr1	200569392	rs2809357	C	A	7799.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.51;SOR=0.824;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2207,200,0
chr1	200573258	rs2808237	C	G	722.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=3.500;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
chr1	200574959	rs2808238	T	C	1811.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DB;DP=29;ExcessHet=1.5490;FS=1.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=-3.300e-01;SOR=0.480;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:482,0,299
chr1	200575744	rs10577607	CTAAA	C	3433.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.160e-01;DB;DP=47;ExcessHet=1.5490;FS=1.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.02;ReadPosRankSum=1.87;SOR=0.457;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,23:47:99:894,0,1293
chr1	200575794	rs2794410	A	G	4947.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DB;DP=85;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=-1.370e+00;SOR=0.769;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,47:85:99:1310,0,1050
chr1	200578093	rs2794409	G	A	4271.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=1.076;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1468,143,0
chr1	200583380	rs2808241	T	G	1757.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e+00;DB;DP=35;ExcessHet=1.5490;FS=2.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=0.663;SOR=1.179;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:524,0,461
chr1	200594240	rs2809350	G	A	3627.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.98;SOR=3.868;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1251,102,0
chr1	200610525	rs5780032	TA	T	694.20	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;DB;DP=8;ExcessHet=3.0103;FS=5.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=1.53;SOR=3.407;VQSLOD=4.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:8:23:177,23,0
chr1	200618168	rs202090004	T	A	265.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.54;ReadPosRankSum=0.308;SOR=0.569;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:274,0,304
chr1	200618238	rs6665604	T	C	4418.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=0.887;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1287,143,0
chr1	200619478	rs2808230	C	A	2334.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.05;SOR=4.977;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:529,42,0
chr1	200619530	rs2809365	T	C	4339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=34.44;SOR=3.084;VQSLOD=5.75;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,30:30:89:964,89,0
chr1	200801621	rs1874080	T	A	416.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=7;ExcessHet=3.9794;FS=3.183;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=-6.000e-02;SOR=0.105;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr1	200816521	rs2172666	G	T	1645.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.56;SOR=2.973;VQSLOD=18.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:883,78,0
chr1	200816643	rs115765157	C	T	87.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=-9.080e-01;SOR=0.693;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:96:0|1:200816643_C_T:96,0,256:200816643
chr1	200816658	rs2131834	T	C	2366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=3.575;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:200816643_C_T:629,48,0:200816643
chr1	200821536	rs10800743	C	T	509.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=5.283;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr1	200824978	rs61825260	C	T	835.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=10;ExcessHet=3.9794;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=-1.400e-01;SOR=0.166;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:200824978_C_T:450,30,0:200824978
chr1	200824980	rs2029752	C	T	832.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=10;ExcessHet=3.9794;FS=2.634;MQ=60.00;MQRankSum=0.00;QD=30.85;ReadPosRankSum=-1.400e-01;SOR=0.166;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:200824978_C_T:450,30,0:200824978
chr1	200824981	rs2029753	C	T	832.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.210e-01;DB;DP=10;ExcessHet=3.9794;FS=5.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=0.00;SOR=0.133;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:200824978_C_T:450,30,0:200824978
chr1	200842005	rs61825263	T	A	763.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.09;ReadPosRankSum=-4.890e-01;SOR=1.085;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:18:1|1:200842005_T_A:262,18,0:200842005
chr1	200842006	rs35650485	C	G	763.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.67;ReadPosRankSum=-4.890e-01;SOR=1.179;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:200842005_T_A:262,18,0:200842005
chr1	200842146	rs375388146	G	C	409.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650e-01;DB;DP=42;ExcessHet=3.0103;FS=1.356;MQ=60.00;MQRankSum=0.00;QD=9.74;ReadPosRankSum=-1.400e-01;SOR=0.384;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:418,0,622
chr1	200843305	rs3738250	G	T	3186.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449e+00;DB;DP=98;ExcessHet=6.9897;FS=8.059;MQ=60.00;MQRankSum=0.00;QD=9.81;ReadPosRankSum=-1.230e-01;SOR=1.150;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,39:98:99:1012,0,1797
chr1	200867492	rs2271018	C	G	656.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=63;ExcessHet=3.0103;FS=5.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.496;SOR=1.243;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,24:63:99:665,0,922
chr1	200877786	rs2279837	T	C	1429.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=2.038;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1446,123,0
chr1	200880978	rs296520	C	T	5714.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.400e+00;DB;DP=71;ExcessHet=3.0103;FS=13.577;MQ=44.78;MQRankSum=-7.880e+00;QD=25.40;ReadPosRankSum=1.61;SOR=0.197;VQSLOD=-5.273e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2263,213,0
chr1	200881172	rs296521	C	A	3026.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=49.87;MQRankSum=0.551;NEGATIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=0.427;SOR=0.680;VQSLOD=-3.102e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1873,183,0
chr1	200943793	rs201905676	CAGGA	C	16194.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.29;SOR=2.004;VQSLOD=5.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,120:120:99:5357,361,0
chr1	200944840	rs296563	T	G	2393.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=18;ExcessHet=3.0103;FS=2.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.50;ReadPosRankSum=0.203;SOR=0.351;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:666,54,0
chr1	200967778	rs7538954	G	T	1442.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-5.070e-01;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:695,0,767
chr1	200969409	.	G	A	135.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.03;ReadPosRankSum=0.952;SOR=0.941;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:144,0,119
chr1	200975040	rs6657915	T	C	1016.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.43;SOR=3.528;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:303,21,0
chr1	201009556	rs1546416	A	G	3447.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DB;DP=114;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.346;SOR=0.722;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,54:114:99:1288,0,1462
chr1	201009897	rs6427875	T	C	4248.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=2.215;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1400,135,0
chr1	201010862	rs6675915	T	C	1500.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=26;ExcessHet=6.9897;FS=6.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=0.052;SOR=0.116;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:503,0,375
chr1	201012484	rs13374149	C	T	2884.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=190;ExcessHet=3.0103;FS=4.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=1.18;SOR=0.465;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,109:190:99:2893,0,1936
chr1	201013336	rs2297906	T	C	2737.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.83;DB;DP=49;ExcessHet=6.9897;FS=6.234;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-8.550e-01;SOR=2.428;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,22:49:99:788,0,894
chr1	201017602	rs7535428	T	G	714.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-3.940e-01;SOR=0.793;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:723,0,671
chr1	201020105	rs6702590	A	G	5722.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.057e+00;DB;DP=74;ExcessHet=3.0103;FS=2.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=1.50;SOR=1.079;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2355,222,0
chr1	201020574	rs3861928	T	G	697.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.710e-01;DB;DP=8;ExcessHet=3.0103;FS=2.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.84;ReadPosRankSum=1.19;SOR=0.307;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:296,24,0
chr1	201021619	rs12029212	C	G	1122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.17;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=-4.220e-01;SOR=0.841;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:613,0,320
chr1	201023436	rs3818873	C	T	274.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=0.598;SOR=2.303;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	201030138	rs12046840	G	A	161.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.006e+00;SOR=0.412;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,110
chr1	201030668	rs2297904	G	A	2754.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=65;ExcessHet=6.9897;FS=0.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-3.540e-01;SOR=0.777;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1014,0,966
chr1	201030988	rs61614423	C	T	2426.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=68;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=0.025;SOR=0.637;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,41:68:99:1280,0,729
chr1	201031307	rs2297903	A	C	2381.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.97;DB;DP=35;ExcessHet=6.9897;FS=8.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=-2.350e-01;SOR=2.303;VQSLOD=18.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:696,0,543
chr1	201035087	rs113792034	G	A	2673.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DB;DP=229;ExcessHet=3.0103;FS=1.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-9.830e-01;SOR=0.676;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,120:229:99:2682,0,2511
chr1	201035607	rs2297901	G	T	887.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786e+00;DB;DP=22;ExcessHet=6.9897;FS=4.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-6.140e-01;SOR=0.095;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:210,0,523
chr1	201037962	rs1272740	T	C	217.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=1.38;SOR=1.863;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr1	201038687	rs7415038	A	G	3341.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.250e-01;DB;DP=108;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-4.030e-01;SOR=0.694;VQSLOD=6.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,64:108:99:1491,0,1033
chr1	201042153	rs3767506	C	T	631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DB;DP=20;ExcessHet=3.9794;FS=2.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.10;SOR=0.343;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:270,0,231
chr1	201042618	rs9333652	G	A	1932.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670e-01;DB;DP=34;ExcessHet=3.9794;FS=2.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.22;ReadPosRankSum=0.363;SOR=1.230;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:532,0,443
chr1	201043301	rs10800757	C	T	697.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.84;ReadPosRankSum=1.72;SOR=0.880;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:147,0,151
chr1	201043302	rs34878705	GC	G	87.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.73;ReadPosRankSum=-9.360e-01;SOR=0.412;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:96:96,0,218
chr1	201043316	rs10920106	C	T	782.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=2.06;SOR=0.693;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:213,0,99
chr1	201043845	rs373486562	ACT	A	1816.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.712e+00;DB;DP=20;ExcessHet=3.0103;FS=2.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.01;ReadPosRankSum=-1.602e+00;SOR=0.402;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,20:20:60:888,60,0
chr1	201044748	rs1998721	A	G	13557.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=182;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=-6.970e-01;SOR=0.658;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,182:182:99:5249,545,0
chr1	201046379	rs925060	T	G	831.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.90;SOR=4.514;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:201046379_T_G:261,18,0:201046379
chr1	201046388	rs6672094	A	G	795.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=4.407;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:201046379_T_G:225,15,0:201046379
chr1	201047075	rs4915477	A	G	9828.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=1.443;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2841,288,0
chr1	201047111	rs9427714	A	G	1321.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=105;ExcessHet=3.0103;FS=9.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=2.32;SOR=0.494;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1330,0,1413
chr1	201047135	rs16847674	G	A	4241.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=121;ExcessHet=3.9794;FS=4.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.432;SOR=0.883;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,60:121:99:1673,0,1535
chr1	201052310	rs12742169	A	T	2825.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995e+00;DB;DP=146;ExcessHet=3.0103;FS=2.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=-1.960e-01;SOR=0.491;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,73:146:99:0|1:201052310_A_T:2834,0,4174:201052310
chr1	201052312	rs12742170	A	C	2825.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020e-01;DB;DP=146;ExcessHet=3.0103;FS=3.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=-1.190e-01;SOR=0.449;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,73:146:99:0|1:201052310_A_T:2834,0,4174:201052310
chr1	201052474	rs12724643	T	C	1650.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241e+00;DB;DP=118;ExcessHet=3.0103;FS=7.875;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-3.570e-01;SOR=0.276;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,68:118:99:1659,0,1394
chr1	201052562	rs12743065	G	T	522.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.650e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-8.110e-01;SOR=1.096;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:531,0,528
chr1	201052640	rs4915478	G	A	811.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.51;ReadPosRankSum=-6.740e-01;SOR=4.804;VQSLOD=13.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:24:155,0,24
chr1	201058692	rs2296384	T	C	1064.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.88;SOR=6.518;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:470,33,0
chr1	201060865	rs2296383	G	A	5272.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.355e+00;DB;DP=121;ExcessHet=1.5490;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=1.02;SOR=0.653;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3594,360,0
chr1	201079088	rs1325311	G	A	855.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.73;SOR=6.184;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:496,36,0
chr1	201079235	rs1325310	C	T	2718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=129;ExcessHet=3.9794;FS=2.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=1.04;SOR=0.929;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,53:129:99:1468,0,2195
chr1	201079458	rs1325309	T	A	13788.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=1.399;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,198:198:99:6110,587,0
chr1	201079590	rs7513829	C	A	3207.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=8.789;VQSLOD=24.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1310,99,0
chr1	201084589	rs80231714	A	G	578.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DB;DP=42;ExcessHet=3.0103;FS=1.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=1.44;SOR=0.495;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:587,0,488
chr1	201112981	rs8158	A	G	6128.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=0.048;SOR=0.657;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2486,231,0
chr1	201113118	rs3738266	A	G	8181.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.457;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2384,231,0
chr1	201115822	rs3752978	A	G	3580.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=122;ExcessHet=3.9794;FS=0.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.955;SOR=0.729;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,56:122:99:1605,0,1641
chr1	201116018	rs3752979	C	G	5999.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.15;ReadPosRankSum=-1.076e+00;SOR=0.909;VQSLOD=6.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1533,132,0
chr1	201122784	rs6684980	C	T	3952.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.420e-01;DB;DP=39;ExcessHet=3.0103;FS=5.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=1.19;SOR=0.266;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1286,117,0
chr1	201122947	rs1925361	T	G	10561.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=-1.790e-01;SOR=0.257;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2924,303,0
chr1	201162411	rs12089471	G	A	986.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.65;SOR=0.859;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1003,110,0
chr1	201162643	rs10800761	G	A	115.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.90;SOR=1.609;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr1	201164764	rs17508253	T	C	215.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.89;SOR=1.179;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:232,24,0
chr1	201165243	rs4915220	C	T	402.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=0.568;SOR=1.911;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr1	201166435	rs11589317	T	C	8320.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.02;SOR=1.262;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3316,309,0
chr1	201166598	rs12759657	C	T	552.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.11;SOR=3.126;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:569,45,0
chr1	201166650	rs180770319	T	G	168.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.135;SOR=2.833;VQSLOD=19.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:177,0,104
chr1	201168168	rs6686078	G	A	188.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.95;SOR=3.611;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr1	201169601	rs35998091	C	T	2041.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.91;SOR=4.615;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2058,159,0
chr1	201170772	rs10157730	A	G	3924.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.83;SOR=2.428;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1355,117,0
chr1	201170824	rs10158976	C	G	6553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=1.114;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1891,189,0
chr1	201171007	rs10800762	T	G	2734.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.64;POSITIVE_TRAIN_SITE;QD=29.43;SOR=2.124;VQSLOD=4.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:884,75,0
chr1	201173104	rs832160	C	T	3950.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=76;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=-6.440e-01;SOR=0.752;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,32:76:99:857,0,1154
chr1	201174204	rs12725611	C	T	1202.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DB;DP=85;ExcessHet=3.0103;FS=1.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-8.150e-01;SOR=0.909;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1211,0,1041
chr1	201175227	rs832156	C	A	4545.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.780e-01;DB;DP=100;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=0.911;SOR=0.661;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,55:100:99:1334,0,1142
chr1	201175274	rs9651057	A	G	5012.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269e+00;DB;DP=114;ExcessHet=1.5490;FS=6.132;MQ=59.96;MQRankSum=-1.134e+00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=-2.200e-01;SOR=0.828;VQSLOD=2.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:65,49:114:99:1128,0,1828
chr1	201175715	rs1341631	G	T	4881.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DB;DP=96;ExcessHet=1.5490;FS=4.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=0.899;SOR=0.436;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,53:96:99:1485,0,1110
chr1	201176018	rs10753895	A	G	2685.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=1.67;SOR=0.715;VQSLOD=6.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,30:48:99:997,0,487
chr1	201176108	rs12094334	G	A	811.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240e+00;DB;DP=52;ExcessHet=3.0103;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=1.52;SOR=0.474;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,32:52:99:820,0,499
chr1	201176968	rs12063867	A	G	1117.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.120e-01;DB;DP=70;ExcessHet=3.0103;FS=2.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-1.342e+00;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,41:70:99:1126,0,788
chr1	201177246	rs72751165	T	C	1676.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DB;DP=112;ExcessHet=3.0103;FS=1.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=-2.476e+00;SOR=0.690;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,63:112:99:1685,0,1163
chr1	201177278	rs7551098	C	T	1700.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.560e-01;DB;DP=121;ExcessHet=3.0103;FS=1.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.335;SOR=0.716;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,69:121:99:1709,0,1271
chr1	201177538	rs7551538	G	T	1797.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.127e+00;DB;DP=122;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=1.79;SOR=1.011;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,70:122:99:1806,0,1432
chr1	201178470	rs12757706	G	A	2770.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675e+00;DB;DP=195;ExcessHet=3.0103;FS=1.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-7.770e-01;SOR=0.557;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,99:195:99:2779,0,2707
chr1	201180084	rs61396495	G	T	1897.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205e+00;DB;DP=115;ExcessHet=3.0103;FS=2.431;MQ=59.15;MQRankSum=0.497;QD=16.50;ReadPosRankSum=1.40;SOR=0.942;VQSLOD=-1.138e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,68:115:99:1906,0,1217
chr1	201180340	rs139390045	A	G	5989.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;DB;DP=442;ExcessHet=3.0103;FS=0.517;MQ=59.42;MQRankSum=-3.330e-01;QD=13.64;ReadPosRankSum=-3.130e-01;SOR=0.638;VQSLOD=-4.944e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:213,226:442:99:5998,0,5534
chr1	201180501	rs71635536	T	C	5547.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=465;ExcessHet=3.0103;FS=0.522;MQ=59.33;MQRankSum=-1.513e+00;QD=11.93;ReadPosRankSum=-1.000e-01;SOR=0.625;VQSLOD=-7.445e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:245,220:465:99:5556,0,6138
chr1	201181217	rs12070918	A	G	1643.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=131;ExcessHet=3.0103;FS=1.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-1.028e+00;SOR=0.807;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:71,60:131:99:0|1:201181217_A_G:1652,0,1914:201181217
chr1	201181223	rs12070919	A	G	16024.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.77;SOR=0.907;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,133:133:99:1|1:201181217_A_G:5142,403,0:201181217
chr1	201181920	rs12060924	G	T	1707.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326e+00;DB;DP=119;ExcessHet=3.0103;FS=5.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-9.750e-01;SOR=1.189;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,68:119:99:1716,0,1273
chr1	201182779	rs2282413	A	G	964.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.280e-01;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-2.900e-02;SOR=0.597;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,34:71:99:973,0,1034
chr1	201183363	rs2282415	C	T	1650.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=1.28;SOR=0.661;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,69:144:99:1659,0,1832
chr1	201183402	rs1568810	T	C	1688.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674e+00;DB;DP=153;ExcessHet=3.0103;FS=2.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.745;SOR=0.687;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,75:153:99:1697,0,2031
chr1	201183773	rs4915495	A	G	31.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:40,0,29
chr1	201184097	rs4915496	G	A	4596.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=77;ExcessHet=1.5490;FS=1.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=-4.690e-01;SOR=0.794;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1000,0,862
chr1	201184275	rs2275673	C	T	188.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.97;ReadPosRankSum=0.954;SOR=0.511;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:197,0,377
chr1	201187764	rs10920144	T	C	9821.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=0.912;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3652,374,0
chr1	201187828	rs3738268	T	C	7445.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=1.494;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2577,264,0
chr1	201187954	rs6667020	C	T	1497.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.51;SOR=3.003;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:524,42,0
chr1	201190732	rs3738269	G	A	7989.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.868e+00;DB;DP=171;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=-5.900e-02;SOR=0.685;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,82:171:99:1879,0,2282
chr1	201191657	rs6427886	C	G	346.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=2.303;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:201,18,0
chr1	201193499	rs6687300	G	T	200.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=0.524;SOR=0.569;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,111
chr1	201193601	rs10920145	C	T	2008.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-3.380e-01;SOR=0.623;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,17:31:99:504,0,405
chr1	201193668	rs6687494	G	T	9059.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=77;ExcessHet=3.0103;FS=5.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.98;ReadPosRankSum=1.34;SOR=2.068;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2687,231,0
chr1	201195119	rs3738270	C	T	10247.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.280e-01;DB;DP=293;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.459;SOR=0.726;VQSLOD=6.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:159,134:293:99:3472,0,4328
chr1	201195296	rs3738271	G	A	2604.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.171e+00;DB;DP=86;ExcessHet=3.9794;FS=6.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.117;SOR=1.422;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1335,0,1361
chr1	201195437	rs4915498	T	A	769.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=4.712;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr1	201197331	rs3753971	G	A	2113.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.28;DB;DP=22;ExcessHet=3.0103;FS=2.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.77;ReadPosRankSum=1.03;SOR=0.418;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:749,66,0
chr1	201252701	rs861275	A	T	1456.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=16;ExcessHet=3.9794;FS=2.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=0.869;SOR=0.296;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:212,0,356
chr1	201252866	rs2268147	C	T	3983.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=173;ExcessHet=3.9794;FS=1.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=1.79;SOR=0.596;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,94:173:99:2475,0,1977
chr1	201282167	rs1772860	C	G	3353.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.84;DB;DP=37;ExcessHet=3.9794;FS=1.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=1.98;SOR=1.028;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:552,0,710
chr1	201285759	rs1779297	A	G	6228.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.09;SOR=0.915;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2030,207,0
chr1	201285909	rs1534051	A	G	1502.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.777e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.98;ReadPosRankSum=-6.680e-01;SOR=0.779;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:362,0,122
chr1	201286614	rs11336457	GA	G	5886.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.350e-01;DB;DP=47;ExcessHet=3.0103;FS=3.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=0.154;SOR=0.415;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,47:47:99:1|1:201286614_GA_G:2140,144,0:201286614
chr1	201286628	rs1772823	C	G	7152.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.53;DB;DP=59;ExcessHet=3.0103;FS=0.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.88;ReadPosRankSum=-2.050e-01;SOR=0.829;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,59:59:99:1|1:201286614_GA_G:2534,178,0:201286614
chr1	201286678	rs1794867	C	T	802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.800e-01;DB;DP=97;ExcessHet=3.0103;FS=0.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=0.936;SOR=0.872;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,37:97:99:811,0,1550
chr1	201286771	rs1722779	C	T	1419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.027;SOR=0.678;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,64:133:99:1428,0,1564
chr1	201288007	rs1794868	G	A	1564.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.970;DB;DP=13;ExcessHet=3.0103;FS=1.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.94;ReadPosRankSum=0.529;SOR=1.112;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:477,39,0
chr1	201288898	rs1722759	A	C	8753.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=1.323;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2599,252,0
chr1	201288955	rs1626370	G	A	721.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983e+00;DB;DP=103;ExcessHet=3.0103;FS=0.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.00;ReadPosRankSum=1.60;SOR=0.825;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,36:103:99:730,0,1858
chr1	201289175	rs1628151	G	A	735.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=53;ExcessHet=3.0103;FS=1.054;MQ=59.73;MQRankSum=0.027;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-9.520e-01;SOR=0.919;VQSLOD=1.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,27:53:99:744,0,656
chr1	201289646	rs1628711	T	C	4231.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.62;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.13;ReadPosRankSum=-2.192e+00;SOR=1.965;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1483,105,0
chr1	201289703	rs1628556	C	A	67.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.061e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.80;ReadPosRankSum=-3.130e-01;SOR=0.105;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:76:76,0,429
chr1	201290968	rs1779292	T	G	6842.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.32;SOR=3.586;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1972,150,0
chr1	201291066	rs2071960	C	T	14095.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=219;ExcessHet=3.9794;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=-4.650e-01;SOR=0.613;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,116:219:99:3206,0,2764
chr1	201291283	rs1772832	C	T	2128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=154;ExcessHet=3.0103;FS=4.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.622;SOR=0.380;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,78:154:99:2137,0,2052
chr1	201292036	rs1779289	T	C	385.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-2.930e-01;SOR=0.507;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:394,0,495
chr1	201292110	rs1779288	T	C	7261.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.74;SOR=1.799;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2069,204,0
chr1	201292488	rs2239845	C	T	680.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=2.19;SOR=1.528;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:95:145,0,95
chr1	201292550	rs34882270	GCA	G	438.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.935;DB;DP=3;ExcessHet=3.0103;FS=4.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=-5.980e-01;SOR=2.670;VQSLOD=6.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	201293512	rs36076398	TG	T	4737.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=57;ExcessHet=3.9794;FS=7.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=0.779;SOR=1.288;VQSLOD=5.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,35:57:99:1076,0,601
chr1	201293970	rs1620046	C	T	2352.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.18;SOR=3.258;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:680,51,0
chr1	201293985	rs854505	G	A	2001.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=20;ExcessHet=3.0103;FS=9.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.44;ReadPosRankSum=1.07;SOR=2.381;VQSLOD=18.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:186,0,390
chr1	201328267	rs3730244	G	A	355.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=0.478;SOR=0.636;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:364,0,214
chr1	201330583	rs2275861	A	G	1242.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DB;DP=34;ExcessHet=3.9794;FS=1.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=-2.280e-01;SOR=0.468;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:594,0,326
chr1	201331335	rs11807637	A	G	458.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=12;ExcessHet=3.9794;FS=6.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=1.03;SOR=0.038;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:171,0,247
chr1	201331379	rs11806184	T	C	539.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=10;ExcessHet=3.9794;FS=1.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=2.26;SOR=1.112;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:176,0,126
chr1	201331554	rs1104859	T	G	3521.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=64;ExcessHet=3.9794;FS=1.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=1.17;SOR=0.534;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:908,0,850
chr1	201331664	rs2365652	C	A	1633.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757e+00;DB;DP=48;ExcessHet=6.9897;FS=0.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.00;SOR=0.562;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:583,0,913
chr1	201333703	rs2275860	C	T	761.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.240e-01;DB;DP=22;ExcessHet=3.9794;FS=3.079;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-1.577e+00;SOR=1.341;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:264,0,308
chr1	201334382	rs3729547	G	A	5766.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850e-01;DB;DP=80;ExcessHet=3.9794;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=-2.200e-01;SOR=0.945;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,50:80:99:1297,0,794
chr1	201335899	rs1573230	C	T	4554.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=1.888;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1531,135,0
chr1	201336984	rs3729843	C	T	2042.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=51;ExcessHet=3.9794;FS=3.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.627;SOR=0.959;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,31:51:99:793,0,570
chr1	201337170	rs3729842	A	G	4213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=1.479;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1238,111,0
chr1	201338553	rs10800776	T	C	3573.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.560e-01;DB;DP=59;ExcessHet=3.9794;FS=2.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=1.22;SOR=0.937;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,26:59:99:703,0,914
chr1	201338586	rs10920183	A	G	1625.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=39;ExcessHet=6.9897;FS=2.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.487;SOR=1.088;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,12:39:99:391,0,829
chr1	201338896	rs10920184	T	C	5027.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=102;ExcessHet=6.9897;FS=1.262;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-1.587e+00;SOR=0.768;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,49:102:99:1225,0,1313
chr1	201339043	rs12049476	C	T	3822.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406e+00;DB;DP=93;ExcessHet=6.9897;FS=0.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.615;SOR=0.657;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,48:93:99:0|1:201339043_C_T:1170,0,1716:201339043
chr1	201339044	rs45584633	G	A	2585.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=91;ExcessHet=3.9794;FS=0.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-2.030e-01;SOR=0.638;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,43:91:99:1|0:201339043_C_T:1165,0,1865:201339043
chr1	201341175	rs4019985	CAGAAG	C	2701.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=57;ExcessHet=6.9897;FS=1.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-7.510e-01;SOR=0.876;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,25:57:99:930,0,2140
chr1	201341341	rs868407	C	T	3220.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=35;ExcessHet=3.9794;FS=1.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=1.52;SOR=0.895;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:452,0,443
chr1	201351421	rs2275866	T	A	2404.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=108;ExcessHet=3.9794;FS=0.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-4.760e-01;SOR=0.780;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,37:108:99:803,0,1898
chr1	201353670	rs10920188	G	A	388.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=-9.670e-01;SOR=0.527;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:198,24,0
chr1	201353827	rs10920189	G	C	1009.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-6.900e-02;SOR=0.818;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:391,0,338
chr1	201354102	rs34070820	C	G	636.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.360e-01;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=1.90;SOR=0.789;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,12:38:99:248,0,720
chr1	201355445	rs138542999	G	A	256.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805e+00;DB;DP=16;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-6.510e-01;SOR=0.078;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:265,0,177
chr1	201355522	rs4128458	T	C	1540.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.468;SOR=0.629;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:397,0,234
chr1	201355943	rs2799677	C	T	5723.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=112;ExcessHet=3.9794;FS=0.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=0.472;SOR=0.631;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,58:112:99:1537,0,1433
chr1	201356428	rs4915230	C	A	1133.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-01;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=1.16;SOR=0.696;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,26:49:99:592,0,624
chr1	201358016	rs2799675	G	C	54.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-1.282e+00;SOR=0.446;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,118
chr1	201360281	rs2719184	A	G	1400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=1.72;SOR=0.727;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,38:65:99:984,0,650
chr1	201382471	rs74645245	G	A	120.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=11;ExcessHet=3.0103;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=0.456;SOR=0.061;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:129,0,267
chr1	201383616	rs2026593	A	G	2509.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.20;SOR=2.610;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:96:938,96,0
chr1	201383643	rs2026594	A	C	5652.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.28;SOR=2.494;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1987,174,0
chr1	201387172	rs11305284	CT	C,CTTT	172.17	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.608;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.86;MQRankSum=0.00;QD=5.94;ReadPosRankSum=0.700;SOR=0.852;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,4,4:11:22:87,47,116,22,0,138
chr1	201434740	rs1053592	G	A	4394.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=1.20;SOR=0.631;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1660,155,0
chr1	201438087	rs145312394	G	GGA	2162.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.456e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.89;ReadPosRankSum=-7.620e-01;SOR=1.240;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:670,45,0
chr1	201453289	rs576697	T	C	1703.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.77;POSITIVE_TRAIN_SITE;QD=32.15;SOR=2.437;VQSLOD=5.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:542,51,0
chr1	201457639	rs35324992	GA	G	914.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=13;ExcessHet=3.9794;FS=3.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.06;ReadPosRankSum=0.906;SOR=0.283;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:464,39,0
chr1	201459621	rs927901	C	T	917.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.26;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=-4.800e-01;SOR=1.075;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:561,42,0
chr1	201489286	rs4310467	C	G	1252.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.860e-01;DB;DP=35;ExcessHet=1.5490;FS=1.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=-2.110e-01;SOR=1.002;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1132,105,0
chr1	201489565	rs4345829	C	T	142.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.59;SOR=3.258;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	201687451	rs11576721	A	G	4953.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325e+00;DB;DP=79;ExcessHet=3.9794;FS=1.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-9.340e-01;SOR=0.587;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,42:79:99:1119,0,941
chr1	201688897	rs11811659	T	C	784.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.71;ReadPosRankSum=1.38;SOR=0.957;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:113,0,107
chr1	201754410	.	CTT	C,CT	853.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.700e-01;DP=25;ExcessHet=3.9794;FS=0.000;MQ=59.45;MQRankSum=0.00;QD=12.93;ReadPosRankSum=-5.280e-01;SOR=0.653;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,8,16:25:99:551,319,326,156,0,108
chr1	201754528	rs16849345	T	C	471.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078e+00;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.20;ReadPosRankSum=-1.111e+00;SOR=0.585;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,25:76:99:480,0,1303
chr1	201755469	rs12563363	C	G	1200.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=65;ExcessHet=3.0103;FS=1.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=0.968;SOR=0.963;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1209,0,702
chr1	201763184	rs564440	T	C	3581.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=109;ExcessHet=6.9897;FS=0.419;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-4.220e-01;SOR=0.657;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,51:109:99:1233,0,1233
chr1	201763499	rs567185	C	T	898.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e-01;DB;DP=13;ExcessHet=6.9897;FS=4.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-1.033e+00;SOR=0.281;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:85:85,0,360
chr1	201763912	rs481530	T	C	670.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.045;SOR=0.520;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:223,0,344
chr1	201772863	rs34105833	T	TG	4482.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.45;SOR=2.233;VQSLOD=2.40;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1071,96,0
chr1	201777250	rs2820289	C	T	665.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470e-01;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-8.050e-01;SOR=0.559;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:674,0,716
chr1	201788804	rs11803449	G	A	569.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=-3.660e-01;SOR=1.220;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:220,0,104
chr1	201816639	rs146207613	ATCTTTT	A	2996.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=57;ExcessHet=3.9794;FS=2.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=2.39;SOR=0.953;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,26:57:99:999,0,1991
chr1	201821443	rs1400875	T	C	1590.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.57;ReadPosRankSum=0.820;SOR=0.796;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:498,0,213
chr1	201824390	rs11576508	G	A	1153.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=46;ExcessHet=3.9794;FS=3.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.344;SOR=1.096;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:434,0,703
chr1	201825257	.	CT	C	36.34	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.08;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:1:44,1,0
chr1	201826340	rs2172935	C	T	4376.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=120;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-1.313e+00;SOR=0.677;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,59:120:99:1497,0,1542
chr1	201826482	rs2132363	C	T	1646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482e+00;DB;DP=39;ExcessHet=6.9897;FS=7.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-9.970e-01;SOR=0.228;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,24:39:99:681,0,527
chr1	201832451	rs2678206	T	G	2186.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.81;POSITIVE_TRAIN_SITE;QD=28.56;SOR=2.381;VQSLOD=5.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:512,45,0
chr1	201832864	rs2494115	G	C	2431.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=43;ExcessHet=6.9897;FS=9.243;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-9.720e-01;SOR=1.388;VQSLOD=19.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:551,0,707
chr1	201837934	rs34353605	CGT	C	7719.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=121;ExcessHet=3.0103;FS=1.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=0.259;SOR=0.756;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,119:121:99:4153,363,0
chr1	201838107	rs2820310	G	A	893.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688e+00;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.25;SOR=0.811;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,21:55:99:479,0,1028
chr1	201840059	rs112851536	GTTATT	G	7428.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=1.882;VQSLOD=6.43;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2147,146,0
chr1	201840464	rs2644124	T	C	5076.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=33.23;SOR=1.858;VQSLOD=5.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1458,120,0
chr1	201844128	rs2678203	G	A	4417.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=33.72;SOR=0.908;VQSLOD=3.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1182,110,0
chr1	201860626	rs2250377	A	G	3593.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DB;DP=64;ExcessHet=3.9794;FS=1.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=0.010;SOR=0.580;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,24:64:99:565,0,1013
chr1	201861016	rs2279681	C	G	3551.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.500e-02;DB;DP=105;ExcessHet=6.9897;FS=4.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.841;SOR=0.972;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,42:105:99:1081,0,1609
chr1	201865763	rs8028	A	G	10863.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=193;ExcessHet=3.9794;FS=0.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-2.600e-01;SOR=0.621;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,99:193:99:2504,0,2233
chr1	201869257	rs2820312	G	A	4702.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;DB;DP=186;ExcessHet=3.9794;FS=4.901;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.44;SOR=0.807;VQSLOD=6.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,94:186:99:2262,0,2257
chr1	201915055	rs2819370	C	T	322.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=-4.640e-01;SOR=0.941;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:331,0,218
chr1	201915658	rs2819371	A	C	831.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.40;SOR=5.994;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:354,24,0
chr1	201926169	rs2819374	G	A	655.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=1.01;SOR=2.636;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	201926403	rs61821487	T	G	959.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=120;ExcessHet=3.0103;FS=0.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=-2.850e-01;SOR=0.593;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,41:120:99:968,0,2001
chr1	201932615	rs141522636	TTG	T	334.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.430e-01;DB;DP=19;ExcessHet=3.0103;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=-7.780e-01;SOR=0.155;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:19:99:343,0,385
chr1	201933008	rs2790899	C	T	134.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-5.450e-01;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:143,0,146
chr1	201934578	rs4648	G	A	723.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DB;DP=75;ExcessHet=3.0103;FS=3.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=-2.950e-01;SOR=1.148;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,32:75:99:732,0,971
chr1	201938482	rs58623305	C	T	62.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-1.440e+00;SOR=0.132;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:71:71,0,112
chr1	201951612	rs80088584	C	A	59.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:67,0,32
chr1	201952294	rs73074403	C	G	1286.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213e+00;DB;DP=22;ExcessHet=6.9897;FS=0.971;MQ=60.00;MQRankSum=0.00;QD=13.41;ReadPosRankSum=-3.500e-01;SOR=0.555;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,4:22:94:0|1:201952294_C_G:94,0,1099:201952294
chr1	201952310	rs112370844	T	G	1042.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=17;ExcessHet=6.9897;FS=1.535;MQ=60.00;MQRankSum=0.00;QD=14.29;ReadPosRankSum=-7.560e-01;SOR=1.247;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,3:17:84:0|1:201952294_C_G:84,0,996:201952294
chr1	201952440	rs148969119	C	CCTT	478.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=-1.200e-01;SOR=0.941;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,4:17:99:129,0,602
chr1	201952574	rs4950806	T	C	2418.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-1.960e-01;SOR=0.688;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,34:58:99:939,0,687
chr1	201952598	rs56768485	G	A	1880.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DB;DP=68;ExcessHet=3.9794;FS=0.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.181;SOR=0.750;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,40:68:99:922,0,816
chr1	201952755	rs4950807	T	A	2983.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116e+00;DB;DP=62;ExcessHet=6.9897;FS=1.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=1.10;SOR=0.597;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,33:62:99:844,0,871
chr1	201966273	rs4950757	G	A	128.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=0.566;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:137,0,127
chr1	201966295	rs143195550	TG	T	136.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.44;SOR=0.551;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:145,0,181
chr1	201966985	rs4950814	G	A	72.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=56.82;MQRankSum=-3.190e-01;NEGATIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=-3.190e-01;SOR=0.446;VQSLOD=-1.994e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:80,0,31
chr1	201969082	rs1130790	G	A	586.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=69;ExcessHet=3.0103;FS=4.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.50;ReadPosRankSum=-8.760e-01;SOR=1.325;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,24:69:99:595,0,1113
chr1	201970562	rs4332408	T	C	18546.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.49;SOR=0.889;VQSLOD=18.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,183:183:99:5836,549,0
chr1	201970748	rs4131469	G	A	1030.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DB;DP=62;ExcessHet=3.0103;FS=0.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-1.210e-01;SOR=0.686;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,36:62:99:1039,0,685
chr1	201970986	rs35227221	C	CA	420.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=19;ExcessHet=3.0103;FS=10.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=1.45;SOR=4.271;VQSLOD=1.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,13:19:99:429,0,168
chr1	201972081	rs16849535	A	G	355.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-2.285e+00;SOR=0.941;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:81:364,0,81
chr1	201973565	rs3820439	G	A	383.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380e-01;DB;DP=32;ExcessHet=3.0103;FS=3.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-3.590e-01;SOR=0.208;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:392,0,417
chr1	201974503	rs10737577	C	T	865.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.15;SOR=6.439;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:169,15,0
chr1	201980095	rs60246030	AT	A	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=-6.350e-01;SOR=1.061;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:354,0,232
chr1	201980119	rs2819361	C	G	3334.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=5.524;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1121,81,0
chr1	201981005	.	C	CA	392.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DP=17;ExcessHet=6.9897;FS=4.437;MQ=59.93;MQRankSum=0.00;QD=9.82;ReadPosRankSum=1.54;SOR=2.670;VQSLOD=3.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:17:61:159,0,61
chr1	201981218	rs11543979	C	G	2677.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=85;ExcessHet=3.9794;FS=4.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=-2.160e-01;SOR=1.050;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1057,0,919
chr1	201981354	rs56310296	T	C	2825.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172e+00;DB;DP=41;ExcessHet=6.9897;FS=2.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=-1.370e-01;SOR=0.968;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,25:41:99:0|1:201981354_T_C:1002,0,1177:201981354
chr1	201981355	rs55666208	G	C	2245.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578e+00;DB;DP=41;ExcessHet=3.9794;FS=4.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=0.602;SOR=1.238;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,25:41:99:0|1:201981354_T_C:1002,0,1177:201981354
chr1	201981862	rs2819362	T	C	7340.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.280e-01;DB;DP=125;ExcessHet=3.9794;FS=4.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.446;SOR=0.507;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3646,375,0
chr1	202092046	rs3795593	C	T	557.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.894e+00;DB;DP=11;ExcessHet=1.5490;FS=5.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-1.033e+00;SOR=0.101;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:302,33,0
chr1	202092360	rs3795595	G	A	12052.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.137e+00;DB;DP=150;ExcessHet=3.0103;FS=1.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=-4.020e-01;SOR=0.528;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4908,450,0
chr1	202092415	rs3795596	A	G	15705.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=195;ExcessHet=3.0103;FS=3.392;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=1.05;SOR=0.456;VQSLOD=7.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,195:195:99:6500,585,0
chr1	202092580	rs7516762	T	C	16085.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.175e+00;DB;DP=241;ExcessHet=3.0103;FS=0.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=0.694;SOR=0.764;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,241:241:99:7159,721,0
chr1	202096815	rs3820380	G	A	3573.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.05;SOR=1.225;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3590,366,0
chr1	202107422	rs140055888	A	AAC	1950.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=32;ExcessHet=3.9794;FS=8.376;MQ=60.00;MQRankSum=0.00;QD=25.67;ReadPosRankSum=2.12;SOR=1.878;VQSLOD=3.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,12:32:99:265,0,430
chr1	202117975	.	CTT	C	257.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DP=14;ExcessHet=3.9794;FS=0.000;MQ=59.16;MQRankSum=-6.190e-01;QD=18.41;ReadPosRankSum=-3.190e-01;SOR=0.693;VQSLOD=0.663;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:14:59:59,0,272
chr1	202128768	rs59879043	C	G	1076.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=34;ExcessHet=6.9897;FS=0.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.229;SOR=0.841;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,10:34:99:237,0,614
chr1	202129826	rs4309039	T	C	4627.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DB;DP=170;ExcessHet=3.9794;FS=10.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=1.42;SOR=0.730;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,82:170:99:2099,0,2239
chr1	202130754	rs3934648	T	C	6657.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.371e+00;DB;DP=90;ExcessHet=3.0103;FS=5.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=-4.480e-01;SOR=0.380;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2690,270,0
chr1	202155543	rs2993432	A	C	15103.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.48;DB;DP=209;ExcessHet=3.0103;FS=1.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=1.000e-03;SOR=0.900;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,209:209:99:6522,626,0
chr1	202156135	rs139095833	C	CCCTCGCT,CCCTCGCTCCTCGCTCCTCGCT	4709.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.889;DB;DP=43;ExcessHet=3.0103;FS=0.761;MQ=60.00;MQRankSum=0.00;QD=34.63;ReadPosRankSum=-7.590e-01;SOR=0.798;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,34,9:43:99:2026,469,356,1439,0,1398
chr1	202156482	rs3010088	G	A	10039.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=175;ExcessHet=3.9794;FS=0.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=0.388;SOR=0.620;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,175:175:99:5173,523,0
chr1	202156628	rs3010089	A	C	12649.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.54;DB;DP=154;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.98;ReadPosRankSum=-2.700e-02;SOR=0.733;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:5089,461,0
chr1	202163063	rs2361431	T	C	1012.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.47;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=1.37;SOR=0.602;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:633,57,0
chr1	202163364	rs2077598	C	G	833.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=15;ExcessHet=3.9794;FS=1.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=1.10;SOR=0.446;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:452,45,0
chr1	202163516	rs1812761	C	A	2315.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187e+00;DB;DP=38;ExcessHet=3.9794;FS=3.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=1.25;SOR=1.152;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,37:38:73:1297,73,0
chr1	202163621	rs3120747	G	A	1865.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557e+00;DB;DP=86;ExcessHet=3.9794;FS=2.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=0.135;SOR=0.510;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,34:86:99:679,0,1322
chr1	202172769	rs12122827	T	G	337.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.398;SOR=0.242;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:63:63,0,176
chr1	202183308	rs10920362	C	T	4269.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050e-01;DB;DP=163;ExcessHet=3.9794;FS=0.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-8.500e-02;SOR=0.627;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,91:163:99:2163,0,1649
chr1	202194441	rs3010067	G	C	1653.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e-01;DB;DP=43;ExcessHet=6.9897;FS=5.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.075;SOR=1.512;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,16:43:99:485,0,838
chr1	202194838	rs4024094	TTCC	T	150.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=0.652;SOR=0.941;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,145
chr1	202196931	rs1452070	G	A	3493.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;DB;DP=36;ExcessHet=3.0103;FS=1.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=-3.590e-01;SOR=0.476;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1201,108,0
chr1	202197161	rs3795598	C	T	1391.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=35;ExcessHet=3.9794;FS=3.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.261;SOR=1.232;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,23:35:99:659,0,272
chr1	202266547	rs788827	C	T	5994.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.090e-01;DB;DP=72;ExcessHet=3.0103;FS=0.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=1.54;SOR=0.757;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,71:72:99:2067,175,0
chr1	202266607	rs788826	C	T	6161.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.646;DB;DP=98;ExcessHet=3.9794;FS=0.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=-1.032e+00;SOR=0.628;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3048,294,0
chr1	202269752	rs788821	C	T	540.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=-4.970e-01;SOR=0.495;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:264,21,0
chr1	202274936	rs705762	T	C	8833.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=174;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.891;SOR=0.682;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5277,522,0
chr1	202275198	rs10920384	C	A	247.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.06;ReadPosRankSum=-1.668e+00;SOR=1.270;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:205,18,0
chr1	202276494	rs896551	C	T	6671.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=114;ExcessHet=3.9794;FS=1.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=1.12;SOR=0.781;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3638,342,0
chr1	202278708	rs705764	G	A	71.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.36;SOR=0.693;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	202279319	rs146771876	C	G	1504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.680e-01;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.46;ReadPosRankSum=-1.582e+00;SOR=0.653;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,67:159:99:1513,0,2341
chr1	202283667	rs705770	A	G	1937.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.419e+00;DB;DP=29;ExcessHet=3.9794;FS=3.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=1.48;SOR=0.279;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:983,87,0
chr1	202287206	rs788795	T	C	8684.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.95;DB;DP=144;ExcessHet=3.9794;FS=5.344;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=0.552;SOR=0.509;VQSLOD=7.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4590,432,0
chr1	202287537	rs788794	G	A	13006.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.93;DB;DP=229;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=0.814;SOR=0.733;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,229:229:99:7843,686,0
chr1	202287813	rs788793	T	C	13854.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415e+00;DB;DP=244;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.06;ReadPosRankSum=0.396;SOR=0.725;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,244:244:99:7945,733,0
chr1	202288462	rs788792	C	A	1800.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.720e-01;DB;DP=29;ExcessHet=3.9794;FS=6.601;MQ=59.93;MQRankSum=1.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=1.11;SOR=1.541;VQSLOD=0.500;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:87:996,87,0
chr1	202302232	rs17490864	A	G	987.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DB;DP=63;ExcessHet=3.0103;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.873;SOR=0.368;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,37:63:99:996,0,665
chr1	202318316	rs930734	A	C	7043.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.235e+00;DB;DP=97;ExcessHet=3.0103;FS=2.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=0.451;SOR=0.880;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3057,291,0
chr1	202386075	rs2843413	T	C	5857.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.81;POSITIVE_TRAIN_SITE;QD=31.66;SOR=1.112;VQSLOD=5.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1476,143,0
chr1	202404058	rs12741420	A	G	291.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-3.220e-01;SOR=0.446;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:300,0,157
chr1	202457784	rs3820374	T	A	2810.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=33;ExcessHet=3.0103;FS=1.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=-3.830e-01;SOR=0.508;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1096,99,0
chr1	202457873	rs3767415	T	C	1023.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=11;ExcessHet=3.0103;FS=6.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.03;ReadPosRankSum=1.22;SOR=3.767;VQSLOD=14.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:462,33,0
chr1	202464280	rs12405771	G	A	1526.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.010e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.65;MQRankSum=-6.390e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.81;ReadPosRankSum=1.00;SOR=3.080;VQSLOD=-2.086e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr1	202531646	rs705750	T	G	246.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.78;SOR=4.174;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:146,12,0
chr1	202531741	rs2249811	C	T	1063.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.345;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.29;ReadPosRankSum=0.906;SOR=1.329;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:499,39,0
chr1	202533880	rs925532	C	T	412.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.38;ReadPosRankSum=0.00;SOR=3.611;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	202536848	rs2292489	C	T	4985.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.070e-01;DB;DP=55;ExcessHet=3.0103;FS=2.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=0.168;SOR=0.472;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1779,165,0
chr1	202565747	rs138552846	AAAAC	A	393.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.970e-01;DB;DP=31;ExcessHet=3.0103;FS=2.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-5.890e-01;SOR=2.093;VQSLOD=6.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,11:31:99:402,0,1100
chr1	202566200	rs9633344	T	C	726.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.61;ReadPosRankSum=-5.240e-01;SOR=4.712;VQSLOD=14.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	202569831	rs12047787	G	A	350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.620e-01;SOR=0.336;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:359,0,626
chr1	202569877	rs1467120	G	A	1461.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.47;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=0.158;SOR=1.292;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:370,30,0
chr1	202570918	rs61820902	G	A	116.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-9.840e-01;SOR=0.941;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:125,0,234
chr1	202572105	rs55968420	GCC	G	7617.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.810e-01;DB;DP=78;ExcessHet=3.0103;FS=14.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.90;ReadPosRankSum=0.687;SOR=0.138;VQSLOD=0.604;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3262,235,0
chr1	202573406	rs12037647	C	T	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=0.936;SOR=0.892;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:185,0,139
chr1	202574784	rs1968583	G	A	5608.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=128;ExcessHet=6.9897;FS=0.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.852;SOR=0.745;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,65:128:99:1679,0,1421
chr1	202702353	rs4950791	T	C	458.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.51;SOR=5.283;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
chr1	202703053	rs4310498	G	A	4667.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=1.695;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1203,113,0
chr1	202704860	rs4325196	G	A	1149.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.01;SOR=6.804;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:359,27,0
chr1	202705455	rs1141109	G	C	4838.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=0.693;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1525,162,0
chr1	202709624	rs71524469	G	A	589.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=58.51;MQRankSum=0.00;QD=34.70;ReadPosRankSum=0.00;SOR=3.383;VQSLOD=4.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	202711350	rs6658451	T	C	1586.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=3.716;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:480,36,0
chr1	202715244	rs3216061	G	GA	2991.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=0.925;VQSLOD=5.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,30:30:93:888,93,0
chr1	202715284	rs1141108	G	A	4930.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=0.992;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1400,135,0
chr1	202718028	rs1892163	A	G	3090.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.75;SOR=5.339;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:985,72,0
chr1	202718202	rs1892164	G	A	10418.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=1.035;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3270,329,0
chr1	202721848	rs12133311	G	A	893.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=6.358;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	202722277	rs4950742	G	A	2824.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.86;SOR=2.395;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:545,51,0
chr1	202722348	rs4950793	A	G	775.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.28;SOR=4.615;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr1	202725286	rs3820153	A	G	974.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=6.358;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:302,21,0
chr1	202729334	rs61246047	TGG	T	72.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.33;SOR=0.693;VQSLOD=5.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	202729906	rs7367771	A	G	712.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.89;SOR=5.892;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:212,18,0
chr1	202729932	rs10732290	C	T	453.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=4.977;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	202731986	rs140328663	C	CCTCAA	1270.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=4.479;VQSLOD=6.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr1	202733238	rs3196669	C	T	10353.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=30.10;SOR=0.882;VQSLOD=2.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3064,321,0
chr1	202735751	rs12140729	T	C	17194.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=0.716;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:4871,507,0
chr1	202743892	rs17497253	T	C	1349.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=32;ExcessHet=3.9794;FS=1.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=1.03;SOR=0.551;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:560,0,423
chr1	202827088	rs6687143	A	G	2314.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.36;SOR=6.091;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:576,48,0
chr1	202827551	rs11581105	A	G	360.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.253e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.269;SOR=1.061;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:241,18,0
chr1	202858107	.	G	A	1426.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-01;DP=124;ExcessHet=3.0103;FS=0.670;MQ=60.00;MQRankSum=0.00;QD=11.50;ReadPosRankSum=-1.083e+00;SOR=0.647;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,57:124:99:1435,0,1736
chr1	202861566	rs1042990	A	G	66.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.431;SOR=0.148;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,1:6:20:20,0,187
chr1	202866331	rs10920519	A	C	259.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:114,0,64
chr1	202878454	rs1539357	T	A	869.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=14;ExcessHet=3.9794;FS=2.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=0.728;SOR=0.194;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:575,42,0
chr1	202878492	rs3820152	T	A	363.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.180e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=-2.166e+00;SOR=0.914;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:299,21,0
chr1	202880547	rs36141808	A	AT	466	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=5.421;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:175,15,0
chr1	202887295	rs2275734	G	A	3280.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.71;DB;DP=53;ExcessHet=3.9794;FS=1.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-1.036e+00;SOR=0.609;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1583,159,0
chr1	202889207	rs7520522	T	C	796.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=2.737;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:305,24,0
chr1	202897431	rs10800882	A	G	687.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=11;ExcessHet=3.9794;FS=3.103;MQ=59.95;MQRankSum=0.464;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=-3.200e-01;SOR=0.117;VQSLOD=1.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:397,33,0
chr1	202934761	rs141825609	C	CT	32.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;QD=4.04;ReadPosRankSum=-1.611e+00;SOR=0.105;VQSLOD=4.58;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:41:0|1:202934761_C_CT:41,0,119:202934761
chr1	202934765	rs12125832	C	T	769.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=16.02;SOR=0.693;VQSLOD=11.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:202934761_C_CT:567,42,0:202934761
chr1	202955500	.	CAAAAA	C,CAA	446.78	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.221e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.37;ReadPosRankSum=-9.670e-01;SOR=3.767;VQSLOD=4.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,2:4:48:186,62,48,63,0,48
chr1	202956340	rs705754	T	G	1749.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=57;ExcessHet=0.4576;FS=3.941;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.69;ReadPosRankSum=1.67;SOR=0.942;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1766,161,0
chr1	202977665	rs3834027	G	GT	215.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.89;SOR=4.407;VQSLOD=6.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:232,24,0
chr1	202978032	rs1418444	C	G	1074.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=25;ExcessHet=1.5490;FS=1.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.37;ReadPosRankSum=-2.500e-01;SOR=1.329;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:840,75,0
chr1	202983752	rs71142584	CA	C	277.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.85;ReadPosRankSum=0.598;SOR=2.303;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:227,24,0
chr1	202987770	rs782788	T	C	2233.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.296;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2250,207,0
chr1	202987796	rs782787	G	A	1611.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.244;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1628,156,0
chr1	202987981	rs782786	A	C	383.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=4.615;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:400,27,0
chr1	202990110	.	CTTTT	C,CT	2804.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.290e-01;DP=62;ExcessHet=1.5490;FS=1.395;MQ=59.94;MQRankSum=0.584;QD=26.71;ReadPosRankSum=0.083;SOR=0.543;VQSLOD=0.532;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,13,45:62:99:2202,1137,1080,296,0,130
chr1	202990155	rs3041268	C	CT	289.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=59.82;MQRankSum=0.00;QD=5.17;ReadPosRankSum=0.379;SOR=0.693;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:16:93:112,0,93
chr1	202991830	rs72085275	CA	C	105.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.83;MQRankSum=0.00;QD=2.72;ReadPosRankSum=0.431;SOR=0.126;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:10:30:30,0,172
chr1	203003870	rs782800	G	A	4077.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=73;ExcessHet=1.5490;FS=0.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-9.010e-01;SOR=0.793;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2507,219,0
chr1	203004627	rs5780134	A	AC	5968.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.92;SOR=0.793;VQSLOD=5.61;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1622,153,0
chr1	203004980	rs11340451	CT	C	1194.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.99;ReadPosRankSum=0.00;SOR=5.670;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:260,21,0
chr1	203006243	rs782805	A	G	12406.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.541e+00;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=0.717;SOR=0.683;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,165:165:99:4756,494,0
chr1	203008174	rs61821060	G	C	19986.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.01;DB;DP=240;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=31.38;ReadPosRankSum=-1.230e-01;SOR=0.264;VQSLOD=5.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,239:240:99:7316,709,0
chr1	203008286	rs10920553	C	G	2506.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=1.842;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2523,222,0
chr1	203012705	rs7547566	C	G	4232.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=1.542;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4249,413,0
chr1	203012906	rs4950908	G	A	3777.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.12;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=-3.180e-01;SOR=0.637;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2404,201,0
chr1	203014196	rs4472812	T	C	185.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.44;SOR=0.941;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:202,21,0
chr1	203017087	rs754894	C	T	677.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.498;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.89;ReadPosRankSum=-1.097e+00;SOR=3.716;VQSLOD=16.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:370,27,0
chr1	203021116	rs3830381	C	CCT	1542.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.34;SOR=7.168;VQSLOD=5.47;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,15:15:45:662,45,0
chr1	203022647	rs12732801	G	T	68.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.10;SOR=2.303;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	203023122	rs2291691	A	C	6042.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.28;DB;DP=138;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=-6.820e-01;SOR=0.682;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4261,411,0
chr1	203023240	rs10635298	G	GGC	3225.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.928e+00;DB;DP=50;ExcessHet=1.5490;FS=1.075;MQ=60.00;MQRankSum=0.00;QD=34.32;ReadPosRankSum=-7.710e-01;SOR=0.941;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2250,150,0
chr1	203024421	rs12742983	A	T	1357.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.593e+00;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.86;ReadPosRankSum=-2.720e-01;SOR=1.179;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:981,78,0
chr1	203025209	rs11590950	G	C	3116.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=0.916;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3133,321,0
chr1	203026203	rs903362	T	G	2703.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=6.994;VQSLOD=23.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:975,72,0
chr1	203026214	rs10753933	T	G	1294.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=5.728;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:742,57,0
chr1	203028711	rs4590732	C	G	1717.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=0.824;SOR=3.816;VQSLOD=15.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:977,69,0
chr1	203030685	rs2270543	T	C	1822.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.115e+00;DB;DP=52;ExcessHet=1.5490;FS=1.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=-2.291e+00;SOR=0.680;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1495,156,0
chr1	203032922	rs1416262	C	T	4212.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;DB;DP=93;ExcessHet=1.5490;FS=3.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=7.000e-03;SOR=0.454;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2898,279,0
chr1	203036614	rs1389792	G	A	762.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.34;ReadPosRankSum=-8.700e-02;SOR=2.303;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:602,45,0
chr1	203036757	rs2275354	T	C	5599.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.000e-02;DB;DP=138;ExcessHet=1.5490;FS=3.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=-4.860e-01;SOR=0.451;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4475,414,0
chr1	203040673	rs9803710	A	G	2230.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.99;SOR=3.296;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:501,42,0
chr1	203040740	rs11583155	T	C	3095.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.00;SOR=2.679;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1082,96,0
chr1	203040816	rs2270540	G	C	3761.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.402e+00;DB;DP=95;ExcessHet=1.5490;FS=1.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.108;SOR=0.556;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2892,285,0
chr1	203045042	rs903365	T	C	1019.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.16;SOR=5.283;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:541,45,0
chr1	203053323	.	A	AGT	513.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.13;ReadPosRankSum=0.608;SOR=0.818;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:84:130,0,84
chr1	203053768	rs903356	T	C	15476.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=0.795;VQSLOD=19.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5299,513,0
chr1	203054523	rs923950	A	T	1688.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=4.125;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:477,36,0
chr1	203098275	rs2228079	T	G	12533.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.160e-01;DB;DP=271;ExcessHet=1.5490;FS=1.388;MQ=59.99;MQRankSum=1.07;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.565;SOR=0.562;VQSLOD=2.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,270:271:99:8665,770,0
chr1	203098455	rs10920569	T	C	1603.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.69;DB;DP=31;ExcessHet=1.5490;FS=1.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-1.014e+00;SOR=1.463;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1193,93,0
chr1	203134135	rs5780149	A	AT	1627.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DB;DP=29;ExcessHet=6.9897;FS=4.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-4.500e-01;SOR=1.345;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,15:29:99:402,0,370
chr1	203134241	rs41264023	G	A	1605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890e-01;DB;DP=116;ExcessHet=3.0103;FS=1.525;MQ=60.00;MQRankSum=0.00;QD=13.84;ReadPosRankSum=-6.790e-01;SOR=0.901;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,65:116:99:1614,0,1248
chr1	203137784	rs35823777	A	ACT	13732.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.14;SOR=1.285;VQSLOD=5.30;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,95:95:99:4314,289,0
chr1	203143446	.	C	T	877.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620e-01;DP=58;ExcessHet=3.0103;FS=2.593;MQ=60.00;MQRankSum=0.00;QD=15.13;ReadPosRankSum=1.07;SOR=1.215;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,32:58:99:886,0,644
chr1	203143725	rs2642531	G	C	3044.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=77;ExcessHet=6.9897;FS=5.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-2.090e-01;SOR=0.423;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1175,0,956
chr1	203144198	rs2791720	T	C	611.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.524;SOR=0.836;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,104
chr1	203148633	rs4950927	A	G	11647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=0.742;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3590,369,0
chr1	203149376	rs2297838	C	A	219.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-1.080e-01;SOR=1.402;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	203150073	rs2275351	C	T	661.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.09;ReadPosRankSum=0.967;SOR=1.292;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:26:75,0,26
chr1	203150179	rs2275352	G	A	728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.336e+00;DB;DP=10;ExcessHet=6.9897;FS=14.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.434;SOR=0.019;VQSLOD=14.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:210,0,149
chr1	203150208	rs2275353	G	A	1144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.597e+00;DB;DP=26;ExcessHet=6.9897;FS=8.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-2.600e-02;SOR=0.107;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:414,0,450
chr1	203152177	rs946259	C	T	482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=0.556;SOR=0.859;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:99:491,0,151
chr1	203152801	rs880633	T	C	939.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DB;DP=85;ExcessHet=3.0103;FS=1.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.290e-01;SOR=0.446;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,36:85:99:948,0,1375
chr1	203153555	rs12128727	C	T	268.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e-01;DB;DP=17;ExcessHet=3.0103;FS=3.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-9.770e-01;SOR=0.132;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:277,0,225
chr1	203153634	rs2071579	C	G	1016.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.88;DB;DP=75;ExcessHet=3.0103;FS=3.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.271;SOR=1.216;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:1025,0,967
chr1	203154532	rs1538372	A	G	3327.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.530e-01;DB;DP=44;ExcessHet=3.9794;FS=1.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=0.041;SOR=0.955;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1542,132,0
chr1	203155703	rs7515776	A	T	8573.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404e+00;DB;DP=184;ExcessHet=3.9794;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.143;SOR=0.790;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,99:184:99:2256,0,1987
chr1	203155882	rs4950928	G	C	4600.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.34;ReadPosRankSum=-1.220e-01;SOR=0.675;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2008,144,0
chr1	203155998	rs10399805	G	A	255.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=1.01;SOR=0.512;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,152
chr1	203175107	rs2494296	A	C	1374.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=21;ExcessHet=6.9897;FS=4.570;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.391;SOR=0.268;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:428,0,266
chr1	203186666	rs41308417	C	G	1095.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102e+00;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=-1.246e+00;SOR=0.651;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,37:65:99:1104,0,842
chr1	203187341	rs142759151	T	TGGTCAA	8159.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.530e-01;DB;DP=169;ExcessHet=3.9794;FS=0.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=-3.136e+00;SOR=0.750;VQSLOD=5.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:66,103:169:99:4220,0,3564
chr1	203188692	rs2486958	A	C	1866.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800e-02;DB;DP=46;ExcessHet=3.9794;FS=3.839;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=1.46;SOR=1.136;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,29:46:99:748,0,372
chr1	203192137	rs3820145	T	C	804.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.552;SOR=0.641;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:813,0,1425
chr1	203192567	rs2297949	G	T	830.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.380e-01;DB;DP=47;ExcessHet=3.0103;FS=1.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=0.575;SOR=1.003;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,28:47:99:839,0,508
chr1	203192820	rs10920586	C	T	1514.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249e+00;DB;DP=126;ExcessHet=3.0103;FS=0.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-9.440e-01;SOR=0.568;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,63:126:99:1523,0,1673
chr1	203194186	rs2297950	C	T	784.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=66;ExcessHet=3.0103;FS=3.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-9.530e-01;SOR=1.270;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:793,0,883
chr1	203198472	rs112477835	G	A	101.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=2.03;SOR=0.693;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:110,0,150
chr1	203274519	rs55650203	A	AGC	1052.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.60;SOR=6.358;VQSLOD=7.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr1	203274536	rs6682221	C	A	1255.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.05;ReadPosRankSum=-1.949e+00;SOR=2.833;VQSLOD=18.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
chr1	203317162	rs7543148	C	T	11124.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.560e-01;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-4.160e-01;SOR=0.699;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4580,433,0
chr1	203455754	rs2233731	G	A	1247.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.28;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=1.08;SOR=0.781;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:597,0,593
chr1	203465570	rs2242198	C	G	938.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956e+00;DB;DP=24;ExcessHet=6.9897;FS=4.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.260;SOR=0.222;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:310,0,324
chr1	203468228	rs146934199	C	T	96.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-1.100e+00;SOR=0.148;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:105,0,157
chr1	203468319	rs74137687	G	C	73.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:28:79,0,28
chr1	203473044	rs754754	T	C	830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=13;ExcessHet=6.9897;FS=3.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.211;SOR=1.390;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:261,0,181
chr1	203652444	rs1419114	A	G	7002.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=8.000e-03;DB;DP=90;ExcessHet=3.0103;FS=3.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=0.070;SOR=0.475;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2725,270,0
chr1	203652683	rs4951369	C	G	937.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.12;ReadPosRankSum=-2.638e+00;SOR=1.473;VQSLOD=22.33;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:203652683_C_G:274,21,0:203652683
chr1	203652698	rs4951070	T	C	809.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.44;ReadPosRankSum=-1.930e+00;SOR=1.893;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:203652683_C_G:225,15,0:203652683
chr1	203667141	rs12030160	T	G	618.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=4.047;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr1	203667409	rs2228445	T	C	7511.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=92;ExcessHet=3.0103;FS=3.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=-1.283e+00;SOR=0.585;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2771,276,0
chr1	203673020	rs72745730	C	T	1453.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=1.13;SOR=0.761;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,62:105:99:1462,0,889
chr1	203698672	rs5780193	CA	C	418.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.900e-02;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=5.44;ReadPosRankSum=-1.290e-01;SOR=0.671;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:24:99:145,0,237
chr1	203709034	rs955865	A	G	552.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:131,0,143
chr1	203734985	rs7540760	T	C	174.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=0.674;SOR=0.892;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:108,0,64
chr1	203740615	rs3737976	T	C	3359.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.990e-01;DB;DP=62;ExcessHet=6.9897;FS=0.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.093;SOR=0.623;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,36:62:99:862,0,663
chr1	203741368	rs3737973	C	A	600.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268e+00;DB;DP=13;ExcessHet=6.9897;FS=1.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-4.500e-01;SOR=0.375;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,2:13:42:42,0,365
chr1	203742915	rs6697274	G	A	669.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.183;DB;DP=23;ExcessHet=3.9794;FS=1.509;MQ=59.20;MQRankSum=-9.570e-01;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=1.08;SOR=1.115;VQSLOD=0.626;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:322,0,379
chr1	203743122	rs3820194	G	A	3633.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=151;ExcessHet=3.9794;FS=5.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=1.31;SOR=0.532;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,69:151:99:1731,0,2170
chr1	203743653	rs3766748	C	T	3043.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DB;DP=141;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=1.42;SOR=0.676;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,62:141:99:1396,0,2077
chr1	203766827	rs872032	T	C	5515.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=120;ExcessHet=3.9794;FS=0.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.660;SOR=0.749;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,70:120:99:1765,0,1268
chr1	203787700	rs4951260	T	C	2557.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=2.239;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:962,87,0
chr1	203798347	rs6665955	G	T	1443.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.07;SOR=7.168;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:367,27,0
chr1	203802746	.	GT	G	150.20	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.01;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=2.19;SOR=1.609;VQSLOD=6.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:33,6,0
chr1	203803016	rs6694647	A	G	7564.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.89;SOR=1.620;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2100,186,0
chr1	203818973	rs41299639	C	A	1440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=59.60;MQRankSum=-1.188e+00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.429;SOR=0.690;VQSLOD=0.322;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:81,56:137:99:1449,0,2117
chr1	203819177	rs11808915	T	C	962.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=1.45;SOR=0.620;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,41:92:99:971,0,1192
chr1	203821200	rs7512877	G	A	6202.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=2.944;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1613,126,0
chr1	203821314	rs41264265	G	A	1766.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=154;ExcessHet=3.0103;FS=0.616;MQ=53.47;MQRankSum=-2.178e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-7.560e-01;SOR=0.616;VQSLOD=-2.035e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,71:154:99:1775,0,1982
chr1	203833111	rs6697629	T	C	546.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.18;ReadPosRankSum=0.00;SOR=1.127;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:73,0,73
chr1	204005917	rs4951289	T	C	477.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=-2.530e-01;SOR=2.985;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	204005962	rs11462565	C	CA	640.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.111;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=17.30;ReadPosRankSum=-3.230e-01;SOR=1.112;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:420,48,0
chr1	204006538	rs4951291	T	C	2979.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=28;ExcessHet=3.0103;FS=14.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=0.598;SOR=0.073;VQSLOD=12.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1021,84,0
chr1	204006597	rs4951039	G	A	4561.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.091e+00;DB;DP=55;ExcessHet=3.0103;FS=7.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=-2.300e-01;SOR=0.328;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1618,164,0
chr1	204010389	rs10437107	G	T	4567.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.625e+00;DB;DP=51;ExcessHet=3.0103;FS=8.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=-2.040e-01;SOR=0.181;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1571,153,0
chr1	204081568	rs5780211	C	CA	474.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.27;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.47;SOR=2.584;VQSLOD=6.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:183,21,0
chr1	204081655	rs374243810	A	ACACACACT,ACACACACACT	3419.50	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.92;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.94;ReadPosRankSum=-7.450e-01;SOR=5.453;VQSLOD=1.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,4,10:14:73:1009,339,262,150,0,73
chr1	204082002	rs2293336	C	T	7008.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.35;DB;DP=105;ExcessHet=3.9794;FS=7.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=-7.680e-01;SOR=0.407;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3691,315,0
chr1	204082323	rs760312	C	T	1989.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.16;DB;DP=15;ExcessHet=3.0103;FS=2.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.70;ReadPosRankSum=-2.141e+00;SOR=1.814;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:581,45,0
chr1	204083802	.	C	T	322.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.433e+00;DP=21;ExcessHet=3.0103;FS=3.222;MQ=60.00;MQRankSum=0.00;QD=15.35;ReadPosRankSum=0.493;SOR=0.088;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:331,0,367
chr1	204094902	rs2692010	T	C	4972.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.87;SOR=7.460;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1501,114,0
chr1	204095426	rs41302109	C	T	335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e-01;DB;DP=8;ExcessHet=3.9794;FS=4.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=1.73;SOR=2.833;VQSLOD=18.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:112,0,113
chr1	204103440	rs11240675	A	G	292.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.37;SOR=1.863;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	204103618	rs2293335	G	A	3259.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=2.23;SOR=0.889;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1036,90,0
chr1	204110334	rs10793755	A	G	10198.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=1.595;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2814,275,0
chr1	204115548	rs1106778	C	T	269.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.46;ReadPosRankSum=-6.740e-01;SOR=0.859;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:33:35,0,33
chr1	204115586	rs940651	G	C	486.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=-1.981e+00;SOR=0.693;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	204128854	rs1464816	T	G	600.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.38;ReadPosRankSum=-3.190e-01;SOR=2.833;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:340,24,0
chr1	204129671	rs5707	A	C	890.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=73;ExcessHet=3.0103;FS=2.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-2.380e-01;SOR=1.127;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,33:73:99:899,0,978
chr1	204159611	rs71745629	CT	C	867.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.35;ReadPosRankSum=1.05;SOR=0.804;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,26:50:99:876,0,807
chr1	204159787	rs4889	G	C	1698.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001e+00;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=1.49;SOR=0.664;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,68:133:99:1707,0,1689
chr1	204167672	rs3795573	T	C	744.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.980e-01;DB;DP=77;ExcessHet=3.0103;FS=0.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-1.297e+00;SOR=0.816;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,33:77:99:753,0,1093
chr1	204170993	rs6700426	A	G	491.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=2.14;SOR=0.560;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:500,0,515
chr1	204172060	rs6689599	G	C	549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-02;DB;DP=47;ExcessHet=3.0103;FS=1.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.735;SOR=0.963;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:558,0,584
chr1	204172096	rs6689607	G	A	622.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650e-01;DB;DP=44;ExcessHet=3.0103;FS=4.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=2.50;SOR=0.431;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:631,0,486
chr1	204197625	rs12760824	C	T	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-5.240e-01;SOR=0.368;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,116
chr1	204214975	rs58927549	TACACAC	T	2441.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=0.847;SOR=0.613;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,20:31:99:802,0,609
chr1	204216410	rs4951329	C	T	4952.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-02;DB;DP=123;ExcessHet=6.9897;FS=0.530;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.408;SOR=0.638;VQSLOD=6.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,46:123:99:1039,0,2059
chr1	204216468	rs4512713	C	T	5332.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=148;ExcessHet=6.9897;FS=2.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-1.590e-01;SOR=0.751;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,56:148:99:1449,0,2363
chr1	204216601	rs4288652	G	A	3228.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=99;ExcessHet=6.9897;FS=3.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.399;SOR=0.511;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,43:99:99:1048,0,1594
chr1	204216762	rs4245724	C	T	1193.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-4.130e-01;SOR=0.582;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:399,0,200
chr1	204218478	rs190237162	G	A	1450.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.960;SOR=0.727;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,57:110:99:1459,0,1275
chr1	204218633	rs10900567	G	C	1393.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DB;DP=24;ExcessHet=6.9897;FS=0.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.072;SOR=0.833;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:165,0,426
chr1	204218714	rs12041137	T	C	1369.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.14;SOR=2.833;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr1	204219559	rs3795570	T	G	1288.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.00;SOR=0.639;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:372,0,336
chr1	204219850	rs4951331	G	A	3428.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;DB;DP=95;ExcessHet=6.9897;FS=1.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.339;SOR=0.575;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,46:95:99:1167,0,1252
chr1	204221032	rs4951332	C	T	497.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=0.00;SOR=0.473;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:114,0,23
chr1	204227165	rs4951336	C	T	426.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=1.10;SOR=0.627;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:106,0,271
chr1	204230581	rs3795569	G	A	3720.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=48;ExcessHet=3.9794;FS=1.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=-5.200e-02;SOR=0.576;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:649,0,686
chr1	204234196	rs367707561	GGT	G	7694.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-02;DB;DP=100;ExcessHet=3.9794;FS=3.276;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.97;ReadPosRankSum=-7.440e-01;SOR=0.893;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,59:100:99:0|1:204234196_GGT_G:2286,0,1978:204234196
chr1	204234222	rs4076020	T	C	8768.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e+00;DB;DP=98;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=27.15;ReadPosRankSum=0.468;SOR=0.698;VQSLOD=5.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,59:98:99:0|1:204234196_GGT_G:2430,0,1916:204234196
chr1	204236360	rs4951339	G	A	483.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.88;ReadPosRankSum=-3.190e-01;SOR=1.863;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:109,0,27
chr1	204236377	rs4951340	A	G	721.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=-4.310e-01;SOR=1.893;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:156,0,67
chr1	204237113	rs34083580	TC	T	1362.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DB;DP=10;ExcessHet=3.9794;FS=7.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=2.22;SOR=0.074;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:212,0,132
chr1	204237416	rs10900571	C	T	4531.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.070e-01;DB;DP=113;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=1.14;SOR=0.693;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,41:113:99:879,0,1966
chr1	204242731	rs35803438	C	A	448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e-02;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-8.120e-01;SOR=0.733;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:457,0,547
chr1	204242838	rs33911350	A	C	1167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.711e+00;SOR=0.745;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,49:94:99:1176,0,1086
chr1	204375119	rs375282063	TA	T	404.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DB;DP=45;ExcessHet=6.9897;FS=0.892;MQ=60.00;MQRankSum=0.00;QD=2.75;ReadPosRankSum=-4.300e-02;SOR=0.529;VQSLOD=5.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,10:45:99:130,0,823
chr1	204379617	rs3014626	T	C	12280.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=0.953;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3006,264,0
chr1	204397427	rs60317484	G	T	235.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DB;DP=50;ExcessHet=3.0103;FS=2.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.71;ReadPosRankSum=0.682;SOR=0.843;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,12:50:99:244,0,1087
chr1	204400783	rs2271421	A	G	304.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.049;SOR=0.446;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:313,0,404
chr1	204401059	rs949696	A	G	652.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e+00;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-1.440e-01;SOR=0.869;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:661,0,556
chr1	204403659	rs3747636	A	G	8186.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.217e+00;DB;DP=152;ExcessHet=3.9794;FS=2.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=2.30;SOR=0.548;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4442,456,0
chr1	204403856	rs16853666	T	C	1349.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.94;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=-5.550e-01;SOR=1.863;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:489,33,0
chr1	204408386	rs9658849	T	C	160.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=0.970;SOR=0.836;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:169,0,473
chr1	204409159	rs35627670	T	TC	1952.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.71;SOR=7.864;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:33:434,33,0
chr1	204409281	rs3014631	C	G	11872.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=3.536;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3839,300,0
chr1	204410447	rs2999496	A	G	942.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.30;SOR=6.593;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr1	204410861	rs2942125	T	C	761.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.47;ReadPosRankSum=-1.036e+00;SOR=1.402;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:239,21,0
chr1	204411942	rs1107339	C	T	134.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.38;ReadPosRankSum=-6.230e-01;SOR=3.258;VQSLOD=17.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:55:143,0,55
chr1	204413740	rs3014632	C	T	1179.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.660e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-4.050e-01;SOR=3.545;VQSLOD=17.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:459,33,0
chr1	204416501	rs3827534	C	T	2091.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107e+00;DB;DP=70;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=-1.461e+00;SOR=0.883;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,69:70:99:2108,168,0
chr1	204418145	rs2271426	C	T	396.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=1.609;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:413,39,0
chr1	204418645	rs3014636	C	T	449.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.84;SOR=4.977;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr1	204418671	rs6660789	T	G	150.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.22;SOR=3.258;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr1	204425028	rs3765156	G	A	3319.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=1.902;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3336,308,0
chr1	204426001	.	A	AACAC,AACACAC	357.96	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.35;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.83;ReadPosRankSum=0.967;SOR=2.179;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,3:6:61:240,79,61,85,0,84
chr1	204426295	rs1008833	A	G	1164.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.960e-01;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-2.130e-01;SOR=0.752;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,52:94:99:1173,0,963
chr1	204426373	rs2137255	C	T	2082.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=1.437;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2099,193,0
chr1	204429212	rs5013460	A	T	4216.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.57;SOR=1.714;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:204429212_A_T:1665,111,0:204429212
chr1	204429213	rs5013459	T	G	4216.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.85;SOR=1.686;VQSLOD=19.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:204429212_A_T:1665,111,0:204429212
chr1	204429215	rs5013458	T	A	4216.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.36;SOR=1.714;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:204429212_A_T:1665,111,0:204429212
chr1	204429216	rs5013457	A	G	4216.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.27;SOR=1.688;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:204429212_A_T:1665,111,0:204429212
chr1	204429285	rs2999485	A	G	2183.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=1.287;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:722,57,0
chr1	204429838	rs2271414	C	G	6538.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.784;DB;DP=110;ExcessHet=3.9794;FS=2.366;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=-1.270e+00;SOR=0.842;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3557,330,0
chr1	204433511	rs11455991	T	TC	5435.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=2.335;VQSLOD=4.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1510,123,0
chr1	204434277	rs2942149	T	C	1106.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.510e+00;DB;DP=9;ExcessHet=3.0103;FS=3.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.99;ReadPosRankSum=1.74;SOR=0.378;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:273,27,0
chr1	204434325	rs58247897	C	CCT	2120.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.050e-01;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.63;ReadPosRankSum=0.864;SOR=0.750;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:204434325_C_CCT:1687,114,0:204434325
chr1	204434326	rs17847779	A	G	2121.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.01;DB;DP=38;ExcessHet=1.5490;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=31.20;ReadPosRankSum=1.08;SOR=0.773;VQSLOD=5.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:204434325_C_CCT:1687,114,0:204434325
chr1	204436066	rs16853773	G	A	2570.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=1.068;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2587,237,0
chr1	204437759	rs2942151	C	G	853.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.368e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=-1.006e+00;SOR=3.528;VQSLOD=17.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
chr1	204438334	rs1124777	C	T	12633.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.402;DB;DP=171;ExcessHet=3.0103;FS=2.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=1.35;SOR=0.944;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5492,512,0
chr1	204438643	rs1553921	G	T	7225.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.944e+00;DB;DP=112;ExcessHet=3.0103;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=0.486;SOR=0.621;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3485,332,0
chr1	204494756	.	G	GT	240.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DP=40;ExcessHet=3.0103;FS=5.895;MQ=59.86;MQRankSum=0.00;QD=6.32;ReadPosRankSum=1.19;SOR=0.239;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,13:40:99:223,0,514
chr1	204495595	.	GTT	GTTT,G	809.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.750e-01;DP=24;ExcessHet=3.9794;FS=0.000;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-2.890e-01;SOR=0.798;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,8,12:24:99:559,395,456,198,0,406
chr1	204501383	rs4252697	C	T	676.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.880e-01;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.86;ReadPosRankSum=-4.000e-01;SOR=0.714;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,33:86:99:685,0,1293
chr1	204506107	rs4245738	C	T	1111.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=2.64;SOR=0.677;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,17:57:99:299,0,1057
chr1	204506174	rs4252704	CT	C	215.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DB;DP=40;ExcessHet=3.0103;FS=5.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.38;ReadPosRankSum=-1.410e-01;SOR=1.863;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,10:40:99:224,0,881
chr1	204512100	rs4252717	T	C	809.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=46;ExcessHet=3.9794;FS=3.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-1.320e-01;SOR=0.291;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:629,0,610
chr1	204512195	rs4252718	A	T	65.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:73,0,67
chr1	204515863	rs2290855	C	T	368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410e-01;DB;DP=20;ExcessHet=3.9794;FS=2.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.937;SOR=1.421;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:340,0,319
chr1	204516025	rs2290854	A	G	2829.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=120;ExcessHet=3.9794;FS=2.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=2.02;SOR=0.878;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,53:120:99:1414,0,1636
chr1	204518842	rs4245739	C	A	2828.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.846;DB;DP=44;ExcessHet=3.9794;FS=0.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=1.12;SOR=0.792;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1543,132,0
chr1	204586812	rs3789045	C	T	186.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=0.00;SOR=0.169;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:195,0,217
chr1	204587047	rs11588857	G	A	819.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628e+00;DB;DP=75;ExcessHet=3.0103;FS=0.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=0.213;SOR=0.885;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:828,0,1130
chr1	204587569	rs3747631	G	C	2845.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=254;ExcessHet=3.0103;FS=6.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-1.180e-01;SOR=1.042;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:150,104:254:99:2854,0,4090
chr1	204588140	rs3747630	G	A	5393.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.522e+00;DB;DP=185;ExcessHet=3.9794;FS=2.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.191;SOR=0.552;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,102:185:99:2847,0,2429
chr1	204589101	rs3789044	G	A	476.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030e-01;DB;DP=50;ExcessHet=3.0103;FS=1.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=0.865;SOR=0.876;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,21:50:99:485,0,797
chr1	204889532	rs11240310	C	T	184.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=57.90;MQRankSum=0.967;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.75;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=0.327;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	204913271	rs12061847	C	G	1259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=39;ExcessHet=3.9794;FS=0.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.576;SOR=0.595;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:494,0,532
chr1	204913652	rs2595961	A	G	793.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.62;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=-3.820e-01;SOR=0.793;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,235
chr1	204915393	rs2595960	A	G	4533.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DB;DP=63;ExcessHet=3.9794;FS=1.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=-6.670e-01;SOR=0.803;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,36:63:99:921,0,664
chr1	204915904	rs2449484	A	G	3603.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209e+00;DB;DP=50;ExcessHet=3.9794;FS=5.803;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=0.525;SOR=1.217;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:688,0,795
chr1	204915920	rs2490418	T	C	3002.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-01;DB;DP=47;ExcessHet=3.9794;FS=9.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=0.362;SOR=1.517;VQSLOD=19.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:555,0,715
chr1	204915939	rs10157992	T	C	1287.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=47;ExcessHet=3.9794;FS=8.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=1.20;SOR=1.543;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:556,0,601
chr1	204917680	rs2068667	C	T	952.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-3.290e-01;SOR=0.657;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,18:23:99:470,0,142
chr1	204926980	rs7519658	C	T	1268.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.310e-01;DB;DP=59;ExcessHet=3.9794;FS=0.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-3.980e-01;SOR=0.805;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,28:59:99:705,0,831
chr1	204927136	rs2275696	A	G	306.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=0.792;SOR=2.303;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	204942163	rs61817611	C	T	65.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:73,0,31
chr1	204943116	rs2246791	G	A	317.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.029e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-8.540e-01;SOR=0.602;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:204943116_G_A:136,0,272:204943116
chr1	204943121	rs2802807	C	T	927.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.006e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.37;ReadPosRankSum=-1.415e+00;SOR=3.180;VQSLOD=18.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:204943116_G_A:461,33,0:204943116
chr1	204943285	rs2595945	A	T	6896.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.970e-01;DB;DP=75;ExcessHet=3.0103;FS=1.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=0.041;SOR=0.535;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2304,224,0
chr1	204943613	rs144619576	G	C	470.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=29;ExcessHet=3.0103;FS=5.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.527;SOR=0.976;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:479,0,588
chr1	204943947	rs2246662	C	A	2550.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076e+00;DB;DP=100;ExcessHet=3.9794;FS=3.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.335;SOR=0.941;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,48:100:99:1106,0,1396
chr1	204943991	rs2246661	C	T	2091.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=83;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=1.62;SOR=0.698;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1020,0,975
chr1	204943992	rs2794861	A	G	7758.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.677;DB;DP=82;ExcessHet=3.0103;FS=1.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=0.668;SOR=0.538;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3146,246,0
chr1	204945618	rs12124296	G	A	2254.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=131;ExcessHet=3.9794;FS=1.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.680;SOR=0.796;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,53:131:99:1163,0,1983
chr1	204945871	rs17415240	C	T	1929.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648e+00;DB;DP=129;ExcessHet=3.0103;FS=2.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.858;SOR=0.884;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,78:129:99:1938,0,1270
chr1	204949767	rs2278798	T	C	156.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=1.04;SOR=1.179;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:67,0,33
chr1	204951209	rs2278796	C	T	1828.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=64;ExcessHet=3.9794;FS=0.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-2.770e-01;SOR=0.768;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:819,0,721
chr1	204952849	rs4951150	C	A	109.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=-5.240e-01;SOR=0.223;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:117,0,24
chr1	204953459	rs10641235	A	ATG	540.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=9;ExcessHet=6.9897;FS=6.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.00;SOR=3.180;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:99:0|1:204953459_A_ATG:258,0,167:204953459
chr1	204953485	rs10657459	A	ATATG	342.62	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=0.00;SOR=2.147;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:204953459_A_ATG:162,0,176:204953459
chr1	204954993	rs2278795	A	G	624.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.37;SOR=1.179;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:287,0,415
chr1	204955319	rs11240324	G	A	2541.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=-5.280e-01;SOR=0.602;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,32:74:99:0|1:204955319_G_A:1135,0,2633:204955319
chr1	204955329	rs11240325	A	G	2258.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.430e-01;DB;DP=64;ExcessHet=3.9794;FS=1.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=-3.010e-01;SOR=0.976;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,26:64:99:0|1:204955319_G_A:973,0,2552:204955319
chr1	204955416	rs11240326	G	A	378.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=5;ExcessHet=3.9794;FS=9.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=1.04;SOR=3.967;VQSLOD=12.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:105,0,71
chr1	204962660	rs12136572	G	A	128.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.03;ReadPosRankSum=-1.133e+00;SOR=0.693;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:136,0,189
chr1	204962662	rs2841629	A	G	154.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.14;ReadPosRankSum=0.231;SOR=0.892;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:162,0,153
chr1	204962718	rs2841628	A	G	1228.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.42;SOR=7.112;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:682,57,0
chr1	204966170	rs16854920	T	C	1144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DB;DP=15;ExcessHet=6.9897;FS=5.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=0.298;SOR=2.246;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,13:15:42:493,0,42
chr1	204966690	rs2794858	G	A	12760.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.82;SOR=2.111;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3772,332,0
chr1	204966749	rs2595944	A	G	5031.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.21;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.68;ReadPosRankSum=0.748;SOR=0.715;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1803,150,0
chr1	204970148	rs10716288	TC	T	1040.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780e-01;DB;DP=26;ExcessHet=1.5490;FS=1.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=-3.400e-01;SOR=1.270;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,9:26:99:232,0,483
chr1	204970243	rs4950976	A	G	4345.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=86;ExcessHet=1.5490;FS=3.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=-4.800e-01;SOR=1.066;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1264,0,1077
chr1	204970302	rs4951151	T	C	4963.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e-01;DB;DP=125;ExcessHet=1.5490;FS=5.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=1.76;SOR=0.934;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,61:125:99:1345,0,1488
chr1	204970495	rs4951152	C	A	1641.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.789e+00;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=-1.277e+00;SOR=0.971;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:537,0,433
chr1	204971553	rs6661381	A	G	330.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-6.520e-01;SOR=1.765;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:91:91,0,140
chr1	204978533	rs1530745	A	G	9276.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.934e+00;DB;DP=106;ExcessHet=3.9794;FS=3.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=1.11;SOR=0.458;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1258,0,1543
chr1	204978643	rs1530744	C	A	5190.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DB;DP=205;ExcessHet=3.9794;FS=2.638;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-7.860e-01;SOR=0.831;VQSLOD=6.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,94:205:99:2354,0,2935
chr1	205027561	rs9787409	G	T	878.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.216e+00;DB;DP=21;ExcessHet=1.5490;FS=1.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=-7.610e-01;SOR=0.437;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:61:698,61,0
chr1	205027737	rs2275697	G	A	2278.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.199e+00;DB;DP=56;ExcessHet=1.5490;FS=4.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-1.500e-02;SOR=0.376;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1669,167,0
chr1	205028152	rs57918586	A	AC	2436.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=1.708;VQSLOD=4.97;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2453,220,0
chr1	205028823	rs5780262	A	AG	2298.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.31;SOR=1.478;VQSLOD=5.61;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2315,208,0
chr1	205028974	rs871423	C	A	69.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.11;SOR=2.833;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:83,9,0
chr1	205031116	rs2229866	C	T	11000.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=263;ExcessHet=1.5490;FS=0.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.986;SOR=0.650;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,263:263:99:8342,785,0
chr1	205031449	rs7545698	A	G	2894.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=0.781;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:743,54,0
chr1	205033254	rs11329962	AG	A	614.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.831;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=1.11;SOR=3.098;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:156,15,0
chr1	205033283	rs1470637	G	A	964.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=1.98;SOR=1.179;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr1	205033374	rs2305277	T	C	3068.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.150e-01;DB;DP=72;ExcessHet=1.5490;FS=1.822;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=0.476;SOR=0.512;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2198,216,0
chr1	205034434	rs3901740	G	T	2328.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=1.708;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2345,218,0
chr1	205034488	rs4460698	A	G	1466.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=2.687;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1483,134,0
chr1	205034552	rs11240346	C	T	513.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=5.283;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:530,39,0
chr1	205034723	rs11588412	C	T	134.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=1.609;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr1	205035455	rs16937	A	G	1293.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=4.921;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:321,27,0
chr1	205035727	rs41264871	A	G	1474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=127;ExcessHet=3.0103;FS=0.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-7.760e-01;SOR=0.811;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,57:127:99:1483,0,1722
chr1	205038731	rs2305275	C	T	6130.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.142e+00;DB;DP=56;ExcessHet=3.0103;FS=2.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=-1.106e+00;SOR=1.044;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,18:56:99:510,0,1261
chr1	205039288	rs12134724	T	C	5485.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=99;ExcessHet=6.9897;FS=1.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-9.640e-01;SOR=0.826;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1363,0,1357
chr1	205040835	rs3820338	A	G	863.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=3.098;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:218,18,0
chr1	205040943	rs12117194	C	G	4647.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.38;ReadPosRankSum=-1.180e+00;SOR=0.768;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,21:50:99:653,0,920
chr1	205041015	rs11240349	G	A	4223.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DB;DP=130;ExcessHet=6.9897;FS=5.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.964;SOR=0.466;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,56:130:99:1319,0,1953
chr1	205041158	rs2229868	C	T	6677.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=178;ExcessHet=6.9897;FS=2.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-5.110e-01;SOR=0.875;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,98:178:99:2440,0,1880
chr1	205041465	rs6662930	T	C	680.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DB;DP=10;ExcessHet=6.9897;FS=2.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=0.405;SOR=1.329;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:51:244,0,51
chr1	205041480	rs56106622	C	T	32.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.48;ReadPosRankSum=0.692;SOR=0.593;VQSLOD=20.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,2:13:41:41,0,406
chr1	205041487	rs10664521	A	ATGGG	2140.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=4.712;VQSLOD=6.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:48:714,48,0
chr1	205041952	rs6696846	C	T	572.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.9794;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.179;SOR=1.270;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:75:99,0,75
chr1	205052939	rs4950979	G	A	7216.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=0.914;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1832,179,0
chr1	205053219	rs4951168	C	T	9260.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=1.140;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2599,234,0
chr1	205063949	rs3738154	C	T	1173.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.110e-01;DB;DP=27;ExcessHet=1.5490;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=0.428;SOR=0.331;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:901,81,0
chr1	205065733	rs11577406	G	T	2245.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.385e+00;DB;DP=57;ExcessHet=6.9897;FS=4.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.789;SOR=0.436;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:735,0,859
chr1	205069404	rs11240356	G	A	1038.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=90;ExcessHet=3.0103;FS=2.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.470;SOR=1.025;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,41:90:99:1047,0,1223
chr1	205070573	rs11240358	G	A	427.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=-1.791e+00;SOR=0.770;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:160,0,280
chr1	205071022	.	CTTTT	CT,C	403.06	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.59;SOR=2.670;VQSLOD=4.35;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,2:4:37:166,49,37,49,0,37
chr1	205074018	rs6683762	T	C	678.73	PASS	AC=1;AF=0.500;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.53;SOR=5.549;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:0,3:3:23:0|1:205074018_T_C:123,0,23:205074018
chr1	205074019	rs6692170	G	A	484.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=1.37;SOR=1.739;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:23:0|1:205074018_T_C:123,0,23:205074018
chr1	205074424	rs3738155	C	T	659.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=-5.250e-01;SOR=0.746;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:207,0,158
chr1	205083865	rs11240360	T	C	557.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.390e-01;DB;DP=16;ExcessHet=6.9897;FS=1.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.404;SOR=0.957;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,3:16:41:41,0,383
chr1	205084120	rs7515178	G	A	709.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.336;DB;DP=14;ExcessHet=3.9794;FS=1.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=1.20;SOR=1.085;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:120,0,368
chr1	205090885	rs61822619	C	G	4422.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DB;DP=113;ExcessHet=6.9897;FS=4.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-1.090e-01;SOR=0.526;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,54:113:99:1331,0,1502
chr1	205091105	rs12033568	G	C	1891.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-4.500e-02;SOR=0.965;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:750,0,770
chr1	205116635	rs11367	A	T	1585.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-01;DB;DP=56;ExcessHet=3.9794;FS=7.453;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.487;SOR=1.365;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,20:56:99:495,0,1022
chr1	205117043	rs35284794	T	TA	230.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.210;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.732;SOR=1.244;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:189,21,0
chr1	205119981	rs3851295	C	T	725.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.444;SOR=0.693;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:734,0,539
chr1	205129466	rs368449201	CT	C	35.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.90;ReadPosRankSum=1.04;SOR=2.093;VQSLOD=4.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:44:44,0,57
chr1	205130413	rs3851294	A	G	6958.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=1.095;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2555,251,0
chr1	205131059	rs10631913	G	GAC	3838.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=31;ExcessHet=3.0103;FS=4.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=0.924;SOR=2.678;VQSLOD=6.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:99:1227,99,0
chr1	205132350	rs34880166	T	TA	61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:22:69,0,22
chr1	205157100	rs10900464	T	C	297.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.310e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=-7.510e-01;SOR=0.976;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:205157100_T_C:225,15,0:205157100
chr1	205157108	rs6593929	A	G	641.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=5.549;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:205157100_T_C:225,15,0:205157100
chr1	205180308	.	G	A	94.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.47;ReadPosRankSum=0.180;SOR=0.495;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,150
chr1	205210415	rs1077883	G	T	445.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=5.136;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:229,18,0
chr1	205225457	rs1172147	G	A	1099.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.815e+00;DB;DP=50;ExcessHet=3.9794;FS=0.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-2.750e-01;SOR=0.853;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:828,0,611
chr1	205238275	rs1768586	A	G	4685.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393e+00;DB;DP=203;ExcessHet=3.9794;FS=0.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-9.810e-01;SOR=0.649;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,90:203:99:2138,0,2985
chr1	205238530	rs1779411	C	T	5153.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DB;DP=158;ExcessHet=3.9794;FS=1.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.972;SOR=0.762;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,72:158:99:2056,0,2386
chr1	205239031	rs1668870	C	G	1329.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DB;DP=40;ExcessHet=3.9794;FS=3.169;MQ=60.00;MQRankSum=0.00;QD=16.21;ReadPosRankSum=0.809;SOR=1.525;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:532,0,713
chr1	205239121	rs1768585	C	G	664.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.61;SOR=4.294;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr1	205240141	rs1668868	G	T	2314.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;DB;DP=46;ExcessHet=1.5490;FS=3.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=0.410;SOR=1.201;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,17:46:99:0|1:205240141_G_T:627,0,1474:205240141
chr1	205240145	rs1768584	A	G	2317.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=45;ExcessHet=1.5490;FS=4.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.93;ReadPosRankSum=0.152;SOR=1.320;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,17:45:99:0|1:205240141_G_T:630,0,1452:205240141
chr1	205240251	rs1668867	C	T	1388.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=71;ExcessHet=3.9794;FS=0.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.68;ReadPosRankSum=0.191;SOR=0.608;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,23:71:99:559,0,1338
chr1	205240659	rs4951184	T	A	95.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:34:103,0,34
chr1	205240913	rs9659978	A	G	3512.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.52;SOR=1.863;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1429,138,0
chr1	205272926	rs1106201	C	T	3426.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=1.157;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3443,305,0
chr1	205272983	rs1106202	C	G	4625.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=0.937;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4642,431,0
chr1	205274174	rs10793728	A	G	1110.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e+00;DB;DP=18;ExcessHet=3.9794;FS=5.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-5.850e-01;SOR=0.113;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,17:18:12:486,12,0
chr1	205275061	rs4951194	C	T	773.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.86;SOR=4.514;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:324,24,0
chr1	205275206	rs4951195	A	T	12894.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.12;ReadPosRankSum=1.27;SOR=0.580;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,97:98:99:1|1:205275206_A_T:4280,285,0:205275206
chr1	205275207	rs4951196	G	T	12894.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.96;ReadPosRankSum=1.26;SOR=0.580;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,97:98:99:1|1:205275206_A_T:4280,285,0:205275206
chr1	205275421	rs4951197	A	G	8142.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=1.639;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2824,252,0
chr1	205290794	rs3738746	G	A	2614.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=119;ExcessHet=3.9794;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-1.090e-01;SOR=0.739;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,52:119:99:1357,0,1738
chr1	205290965	rs35321028	C	T	697.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.176;SOR=0.836;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:435,0,325
chr1	205307789	rs11240441	G	A	719.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326e+00;DB;DP=66;ExcessHet=3.0103;FS=2.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.237;SOR=0.982;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,32:66:99:728,0,858
chr1	205308335	rs1105385	G	A	745.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-5.910e-01;SOR=0.811;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:754,0,793
chr1	205308368	rs1105387	C	T	1039.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127e+00;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=1.11;SOR=0.726;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,44:99:99:1048,0,1505
chr1	205308591	rs1105388	C	T	1613.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DB;DP=98;ExcessHet=3.0103;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-3.330e-01;SOR=0.988;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,55:98:99:1622,0,1198
chr1	205312280	rs7549293	C	G	3776.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.771e+00;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=1.47;SOR=0.902;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1946,162,0
chr1	205312848	rs7526701	G	A	796.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=-9.290e-01;SOR=1.040;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:318,0,205
chr1	205325458	rs2298251	G	A	715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022e+00;DB;DP=32;ExcessHet=3.9794;FS=7.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.136;SOR=1.877;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:287,0,591
chr1	205325609	rs2298250	C	A	4067.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=123;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=1.11;SOR=0.652;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,60:123:99:1336,0,1421
chr1	205353215	rs2274704	C	T	56.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,144
chr1	205385498	rs6688045	C	T	9187.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=111;ExcessHet=3.0103;FS=3.327;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=-7.050e-01;SOR=0.645;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,57:111:99:1433,0,1247
chr1	205389460	rs16855560	T	C	938.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=1.24;SOR=0.347;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:282,0,300
chr1	205417303	rs79887708	C	T	91.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=2.37;SOR=1.270;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:100,0,144
chr1	205417586	rs74141216	C	T	512.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=17;ExcessHet=3.9794;FS=1.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.454;SOR=1.018;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:229,0,223
chr1	205492756	rs7529442	A	G	16898.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=0.966;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:5191,454,0
chr1	205495392	rs2297837	A	G	14819.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.79;SOR=0.865;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4677,420,0
chr1	205495976	rs1544154	A	G	19514.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=1.056;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,220:220:99:6696,659,0
chr1	205497066	rs2297836	G	A	4348.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=63;ExcessHet=3.9794;FS=4.224;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=1.45;SOR=0.450;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,30:63:99:954,0,923
chr1	205497249	rs371519112	C	T	1309.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.59;ReadPosRankSum=0.349;SOR=0.730;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,56:104:99:1318,0,1000
chr1	205497940	rs12408209	C	G	245.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=0.189;SOR=1.445;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:93:93,0,108
chr1	205498021	rs7531230	T	C	2545.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.393e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.05;ReadPosRankSum=-2.910e-01;SOR=1.493;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:938,78,0
chr1	205499086	rs140033093	T	TA	116.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.54;ReadPosRankSum=0.816;SOR=0.693;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:125,0,126
chr1	205499577	rs6668356	C	G	4759.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.260e-01;DB;DP=58;ExcessHet=3.0103;FS=0.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=0.657;SOR=0.828;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1896,131,0
chr1	205499660	rs41264895	C	T	636.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.772;SOR=0.727;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:645,0,764
chr1	205500342	rs76069011	C	T	1157.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=1.04;SOR=0.223;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:684,0,474
chr1	205500543	rs11240507	T	C	2694.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=244;ExcessHet=3.0103;FS=2.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=1.42;SOR=0.536;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,115:244:99:2703,0,3069
chr1	205500719	rs74142375	T	A	822.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.078e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.496;SOR=0.622;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:212,0,259
chr1	205538585	rs11576414	A	G	925.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.25;SOR=2.833;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
chr1	205553346	.	AT	A,ATTT	403.30	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.28;DP=23;ExcessHet=3.9794;FS=4.599;MQ=59.73;MQRankSum=0.00;QD=9.17;ReadPosRankSum=0.325;SOR=2.041;VQSLOD=4.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,4,4:23:35:172,108,228,35,0,225
chr1	205554085	rs7526132	G	C	5819.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DB;DP=98;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.745;SOR=0.698;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,31:98:99:0|1:205554085_G_C:1080,0,3594:205554085
chr1	205554095	rs7515820	A	C	2847.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=95;ExcessHet=6.9897;FS=4.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.275;SOR=0.509;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,30:95:99:0|1:205554085_G_C:1064,0,3554:205554085
chr1	205555145	rs7531623	G	A	520.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:246,21,0
chr1	205561372	rs7529077	C	T	2833.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.14;SOR=1.396;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2850,281,0
chr1	205561511	rs6593956	T	A	1100.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=5;ExcessHet=3.9794;FS=2.675;MQ=59.65;MQRankSum=0.00;QD=25.00;ReadPosRankSum=0.524;SOR=0.197;VQSLOD=3.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:10:133,0,10
chr1	205600653	rs6593957	C	T	418.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.252e+00;DB;DP=3;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=19.95;ReadPosRankSum=0.184;SOR=2.235;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	205615594	rs4951249	T	C	232.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=0.00;SOR=0.330;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:67,0,34
chr1	205615791	rs6673283	A	G	2443.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e-01;DB;DP=108;ExcessHet=3.9794;FS=4.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=0.454;SOR=0.476;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,51:108:99:1135,0,1315
chr1	205615947	rs4951250	C	A	4292.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.956e+00;DB;DP=41;ExcessHet=3.0103;FS=1.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-6.550e-01;SOR=0.538;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1416,126,0
chr1	205631058	rs16856106	G	A	2013.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DB;DP=196;ExcessHet=3.0103;FS=2.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.961;SOR=0.516;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,85:196:99:2022,0,2801
chr1	205632932	rs11240547	A	G	1889.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=43;ExcessHet=6.9897;FS=4.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-2.200e-01;SOR=0.378;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:565,0,730
chr1	205686624	.	CT	C	36.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.90;MQRankSum=0.00;QD=1.02;ReadPosRankSum=0.296;SOR=0.693;VQSLOD=5.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:9:25:25,0,147
chr1	205687348	rs71709139	CTTTTTTCTTT	C	2255.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=37;ExcessHet=6.9897;FS=2.501;MQ=60.00;MQRankSum=0.00;QD=20.14;ReadPosRankSum=0.040;SOR=0.473;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,17:37:99:654,0,1881
chr1	205689807	rs823094	T	G	3992.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.81;DB;DP=76;ExcessHet=6.9897;FS=9.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.905;SOR=1.308;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:979,0,960
chr1	205696615	rs1775154	T	A	337.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=-1.150e+00;SOR=1.244;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:55:55,0,143
chr1	205696671	rs1772147	G	A	1355.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.90;ReadPosRankSum=-8.690e-01;SOR=1.519;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:448,33,0
chr1	205718858	rs7536483	A	T	898.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=-3.210e-01;SOR=0.730;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:369,0,315
chr1	205739192	rs823138	T	C	411.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.28;ReadPosRankSum=0.967;SOR=2.670;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:15:211,15,0
chr1	205739200	rs16856287	C	T	103.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:112,0,69
chr1	205739266	rs708723	C	T	638.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.520e-01;DB;DP=14;ExcessHet=6.9897;FS=1.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-1.190e+00;SOR=1.179;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:243,0,214
chr1	205739396	rs823139	T	G	2782.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=47;ExcessHet=3.9794;FS=2.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=0.742;SOR=1.000;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:603,0,572
chr1	205740403	rs823140	A	G	505.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=57.88;POSITIVE_TRAIN_SITE;QD=34.42;SOR=3.611;VQSLOD=5.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr1	205740474	rs147046832	G	GA	396.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.536e+00;DB;DP=28;ExcessHet=3.0103;FS=6.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-2.070e-01;SOR=0.084;VQSLOD=5.93;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,14:28:99:405,0,416
chr1	205740829	rs150275500	T	TC	510.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DB;DP=44;ExcessHet=3.0103;FS=1.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-3.500e-02;SOR=0.944;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,20:44:99:519,0,652
chr1	205740887	.	TC	T	140.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DP=16;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;QD=8.77;ReadPosRankSum=0.489;SOR=1.863;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:149,0,280
chr1	205741426	rs823141	T	C	161.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=6.9897;FS=2.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=0.282;SOR=1.501;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,108
chr1	205741816	rs823142	A	T	488.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=-4.640e-01;SOR=1.863;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr1	205744138	rs708725	G	T	2588.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=71;ExcessHet=6.9897;FS=9.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-7.280e-01;SOR=1.371;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,30:71:99:839,0,995
chr1	205764640	rs823156	G	A	7187.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.000e-03;DB;DP=113;ExcessHet=3.0103;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=0.112;SOR=0.879;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3275,334,0
chr1	205765795	rs823157	T	A	1190.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.64;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=0.518;SOR=2.242;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr1	205765980	rs115519405	C	T	889.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DB;DP=83;ExcessHet=3.0103;FS=1.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-3.830e-01;SOR=0.981;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,35:83:99:898,0,1323
chr1	205766159	rs5780304	CA	C	7855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=0.966;VQSLOD=5.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2889,244,0
chr1	205767885	rs708727	G	A	8035.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=228;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.55;SOR=0.718;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,113:228:99:2845,0,2849
chr1	205768309	rs4396169	C	T	537.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=-7.230e-01;SOR=2.303;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:264,0,141
chr1	205769223	rs9438392	C	T	141.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=0.674;SOR=0.941;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:26:150,0,26
chr1	205779231	rs11240569	G	A	1665.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=118;ExcessHet=3.0103;FS=1.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-3.980e-01;SOR=0.918;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,60:118:99:1674,0,1493
chr1	205798033	rs823085	G	A	1754.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.09;SOR=7.523;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
chr1	205801872	rs1361754	A	G	5304.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=171;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.04;SOR=0.737;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,82:171:99:1888,0,2069
chr1	205809642	rs10900525	G	C	4502.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.281e+00;DB;DP=46;ExcessHet=3.9794;FS=3.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=0.127;SOR=0.466;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,30:46:99:769,0,395
chr1	205812614	rs960603	C	T	667.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=5;ExcessHet=3.0103;FS=8.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=1.72;SOR=3.500;VQSLOD=14.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr1	205812912	rs7518979	A	G	792.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646e+00;DB;DP=69;ExcessHet=3.0103;FS=4.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.956e+00;SOR=1.395;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:801,0,1019
chr1	205813672	rs11240574	T	C	1223.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=0.426;SOR=0.610;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:205813672_T_C:116,0,101:205813672
chr1	205813677	rs4369285	T	C	1792.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=1.556;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:205813672_T_C:317,24,0:205813672
chr1	205814497	rs1891460	T	C	13373.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=0.939;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4359,441,0
chr1	205884062	rs9438438	T	C	2004.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DB;DP=195;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=0.151;SOR=0.732;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,84:195:99:2013,0,2812
chr1	205884274	rs6669481	T	C	1501.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.790e-01;DB;DP=110;ExcessHet=3.0103;FS=0.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-3.000e-03;SOR=0.561;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,55:110:99:1510,0,1519
chr1	205884646	rs142823003	C	CTG	747.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.210;SOR=2.765;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:411,39,0
chr1	205886169	rs60716530	T	C	323.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=2.46;SOR=0.223;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:117,0,67
chr1	205886225	.	T	TA	581.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e-01;DP=21;ExcessHet=6.9897;FS=2.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.46;ReadPosRankSum=1.24;SOR=0.402;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:21:99:189,0,344
chr1	205886243	rs60644810	A	G	1173.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=27;ExcessHet=3.9794;FS=1.160;MQ=60.00;MQRankSum=0.00;QD=16.76;ReadPosRankSum=1.85;SOR=0.454;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,16:27:99:0|1:205886243_A_G:639,0,414:205886243
chr1	205886258	rs57012703	A	AG	1230.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.51;SOR=0.776;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,17:31:99:0|1:205886243_A_G:701,0,502:205886243
chr1	205886376	rs35694044	T	A	2583.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DB;DP=124;ExcessHet=3.9794;FS=6.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-1.504e+00;SOR=1.075;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,56:124:99:1395,0,1721
chr1	205886647	rs41264907	C	T	516.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=40;ExcessHet=3.0103;FS=1.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-1.870e+00;SOR=1.091;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:525,0,531
chr1	205886780	rs16830370	C	T	468.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.830e-01;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=0.309;SOR=0.446;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:298,0,219
chr1	205887981	rs16856462	T	C	1667.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=72;ExcessHet=3.9794;FS=0.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-1.930e-01;SOR=0.831;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,35:72:99:883,0,821
chr1	205888272	rs7366689	T	C	1097.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.27;ReadPosRankSum=0.674;SOR=2.517;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:104,0,265
chr1	205888323	rs16856468	A	G	280.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=1.38;SOR=1.179;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:99,0,151
chr1	205889329	rs16856470	C	T	825.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061e+00;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.040e-01;SOR=0.786;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:447,0,399
chr1	205889532	rs16856473	G	A	281.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:109,0,68
chr1	205890679	rs12759719	T	C	8594.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=113;ExcessHet=3.0103;FS=2.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=-1.655e+00;SOR=0.846;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,36:113:99:843,0,1906
chr1	205893753	rs34907090	AT	A	1105.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=22;ExcessHet=6.9897;FS=1.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=1.34;SOR=1.044;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,15:22:99:412,0,156
chr1	205896235	rs11240594	G	A	3809.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693e+00;DB;DP=87;ExcessHet=6.9897;FS=0.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.086;SOR=0.775;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,43:87:99:1008,0,1167
chr1	205896475	rs7366204	C	T	5456.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612e+00;DB;DP=45;ExcessHet=3.0103;FS=7.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.15;ReadPosRankSum=0.679;SOR=0.235;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,28:45:99:761,0,458
chr1	205896647	rs34803033	A	G	1435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.375;SOR=0.726;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,26:65:99:610,0,958
chr1	205901000	rs33943971	G	A	1936.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=59;ExcessHet=3.9794;FS=6.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=1.23;SOR=0.299;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,33:59:99:873,0,655
chr1	205901788	rs3811423	G	T	955.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.191e+00;DB;DP=22;ExcessHet=6.9897;FS=8.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-1.484e+00;SOR=2.930;VQSLOD=15.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:225,0,460
chr1	205904458	rs1891310	G	T	132.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-2.530e-01;SOR=0.223;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:60:73,0,60
chr1	206243870	rs28689766	G	T	377.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=10.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=1.38;SOR=3.702;VQSLOD=12.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr1	206325655	rs55944445	C	T	256.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=-1.368e+00;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	206327510	rs61742539	T	C	1534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.567;SOR=0.763;VQSLOD=6.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,29:56:99:730,0,581
chr1	206327801	rs28602403	A	G	261.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=10;ExcessHet=3.9794;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.413e+00;SOR=0.260;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:93:186,0,93
chr1	206328647	rs28694519	G	C	971.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104e+00;DB;DP=29;ExcessHet=3.9794;FS=2.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.741;SOR=0.290;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,20:29:99:664,0,305
chr1	206328803	rs41302235	T	C	3915.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DB;DP=181;ExcessHet=3.9794;FS=6.996;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.195;SOR=0.435;VQSLOD=6.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,86:181:99:2251,0,2441
chr1	206516261	rs201036189	C	T	5422.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342e+00;DB;DP=116;ExcessHet=6.9897;FS=1.919;MQ=49.13;MQRankSum=0.260;QD=13.26;ReadPosRankSum=-3.900e-02;SOR=0.864;VQSLOD=-3.315e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,55:116:99:1450,0,1675
chr1	206566687	rs2255806	G	A	198.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=44.27;MQRankSum=-1.723e+00;QD=5.24;ReadPosRankSum=-1.970e-01;SOR=0.389;VQSLOD=-4.167e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:88:88,0,311
chr1	206567165	rs2480376	T	A	1971.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.737e+00;DB;DP=90;ExcessHet=6.9897;FS=0.844;MQ=59.16;MQRankSum=-1.931e+00;QD=5.90;ReadPosRankSum=-1.190e-01;SOR=0.509;VQSLOD=-1.228e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:72,18:90:99:380,0,2481
chr1	206603535	rs2297539	G	A	1846.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540e-01;DB;DP=71;ExcessHet=3.9794;FS=5.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=1.21;SOR=0.428;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,38:71:99:949,0,923
chr1	206623685	rs12725078	G	T	12627.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.490e-01;DB;DP=242;ExcessHet=3.9794;FS=1.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=1.36;SOR=0.804;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,242:242:99:7326,722,0
chr1	206623866	rs11809494	C	T	4469.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.82;DB;DP=60;ExcessHet=3.9794;FS=0.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=0.563;SOR=0.856;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,37:60:99:1104,0,551
chr1	206623952	rs2483060	T	C	1342.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=-8.020e-01;SOR=1.981;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:440,30,0
chr1	206624018	rs2480408	G	A	543.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.21;SOR=5.283;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	206626229	.	CAAAA	C	198.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.58;ReadPosRankSum=0.674;SOR=2.833;VQSLOD=6.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,1:2:39:39,0,39
chr1	206626256	rs11322684	A	T,G	819.31	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.140e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.43;ReadPosRankSum=-7.000e-01;SOR=3.056;VQSLOD=18.03;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,4,5:9:99:302,166,178,150,0,142
chr1	206626607	rs11120575	G	A	4974.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316e+00;DB;DP=127;ExcessHet=6.9897;FS=1.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-5.800e-02;SOR=0.597;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,71:127:99:1803,0,1485
chr1	206626779	rs2483059	A	G	2856.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.800e-02;DB;DP=38;ExcessHet=3.0103;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=1.68;SOR=0.455;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1287,114,0
chr1	206626828	rs2483058	C	G	758.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=1.06;SOR=0.446;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:321,0,110
chr1	206634429	rs17018890	A	G	1586.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=108;ExcessHet=3.0103;FS=1.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.289;SOR=0.509;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,57:108:99:1595,0,1273
chr1	206646311	rs2274902	C	T	475.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=-1.350e-01;SOR=1.730;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:191,0,102
chr1	206646427	rs1930437	C	A	1928.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150e+00;DB;DP=58;ExcessHet=3.9794;FS=3.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=1.50;SOR=0.333;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,31:58:99:964,0,905
chr1	206647476	rs41296002	C	T	64.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:73,0,32
chr1	206647742	rs1539242	A	G	16309.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.62;ReadPosRankSum=0.559;SOR=0.437;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,154:155:99:4791,455,0
chr1	206647787	rs1539243	T	C	17063.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=0.737;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:4885,483,0
chr1	206648037	rs2297546	C	G	2719.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;DB;DP=42;ExcessHet=3.9794;FS=3.172;MQ=59.99;MQRankSum=0.985;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=-6.300e-01;SOR=0.439;VQSLOD=2.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,22:42:99:594,0,530
chr1	206648378	rs1059704	G	A	1114.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=25;ExcessHet=6.9897;FS=9.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-9.510e-01;SOR=2.584;VQSLOD=16.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:355,0,446
chr1	206649372	rs11117901	T	C	884.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=-2.910e-01;SOR=3.180;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:276,21,0
chr1	206649952	rs11117909	G	A	2009.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.635e+00;DB;DP=65;ExcessHet=3.9794;FS=0.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=0.990;SOR=0.617;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,38:65:99:1146,0,856
chr1	206650296	rs41296036	C	T	224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.009e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-6.200e-02;SOR=0.693;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:233,0,263
chr1	206651107	rs2297545	G	A	3230.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=70;ExcessHet=6.9897;FS=4.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=1.02;SOR=1.054;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,39:70:99:1093,0,760
chr1	206651350	rs2297543	C	T	3039.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;DB;DP=55;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=-1.940e-01;SOR=0.690;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,43:55:99:1235,0,237
chr1	206651894	.	T	C	139.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.354e+00;DP=17;ExcessHet=3.0103;FS=4.523;MQ=60.00;MQRankSum=0.00;QD=8.19;ReadPosRankSum=0.352;SOR=0.061;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:148,0,398
chr1	206652404	rs17021877	G	A	3071.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=298;ExcessHet=3.0103;FS=0.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=1.17;SOR=0.644;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:169,129:298:99:3080,0,4035
chr1	206664396	rs7552033	A	T	1891.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.73;SOR=4.892;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:694,54,0
chr1	206664407	rs10863430	T	G	1643.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.72;SOR=3.716;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:644,51,0
chr1	206665896	rs2336940	C	G	10247.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.20;DB;DP=119;ExcessHet=3.0103;FS=1.863;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.05;ReadPosRankSum=-1.172e+00;SOR=0.859;VQSLOD=6.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:4345,357,0
chr1	206666584	rs17024884	A	G	1044.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.592;SOR=0.641;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,39:97:99:1053,0,1642
chr1	206666734	rs12026566	T	G	4092.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=99;ExcessHet=3.9794;FS=3.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=0.173;SOR=0.908;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,43:99:99:1123,0,1239
chr1	206667137	rs41299874	A	C	423.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=-5.100e-02;SOR=1.730;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:432,0,435
chr1	206669465	rs3748022	C	T	3035.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DB;DP=82;ExcessHet=6.9897;FS=0.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.428;SOR=0.743;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,38:82:99:951,0,1048
chr1	206680983	rs2095124	A	C	12970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=1.248;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:4839,486,0
chr1	206758077	rs4418597	T	A	4176.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.451e+00;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=1.29;SOR=0.742;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2158,206,0
chr1	206766843	.	AGAGTGTGTGTGTGC	A	112.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DP=27;ExcessHet=3.0103;FS=0.000;MQ=58.51;MQRankSum=-2.540e-01;QD=4.16;ReadPosRankSum=0.665;SOR=0.836;VQSLOD=0.355;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,7:27:99:0|1:206766819_AGAGC_A:121,0,576:206766819
chr1	206766845	.	AGTGTGTGTGTGCGTGTGT	*,AGTGTGT	1926.89	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.386;DP=27;ExcessHet=3.0103;FS=0.000;MQ=58.80;MQRankSum=-7.700e-02;QD=29.64;ReadPosRankSum=1.74;SOR=0.864;VQSLOD=0.274;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,20:27:99:1445,673,576,222,0,121
chr1	206770283	rs11284613	AC	A	1212.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=5.136;VQSLOD=7.09;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:352,36,0
chr1	206772194	rs373767533	ACT	A	1739.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.052;DB;DP=14;ExcessHet=3.0103;FS=2.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=0.626;SOR=0.330;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:629,42,0
chr1	206772753	rs4845116	A	G	2897.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=2.891;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:606,48,0
chr1	206773659	rs6662929	A	G	6658.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=1.206;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2159,206,0
chr1	206773822	rs6658201	C	T	1144.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.67;ReadPosRankSum=-1.068e+00;SOR=3.258;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:522,39,0
chr1	206776097	rs6658181	G	A	1360.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.638;DB;DP=14;ExcessHet=3.0103;FS=3.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=0.605;SOR=1.547;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:443,42,0
chr1	206776200	rs6668054	C	T	7026.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.60;SOR=2.287;VQSLOD=19.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,53:53:99:1|1:206776200_C_T:2410,163,0:206776200
chr1	206776203	rs6675741	T	C	7002.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.31;SOR=2.303;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,54:54:99:1|1:206776200_C_T:2410,163,0:206776200
chr1	206809998	rs11412564	T	TA	409.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=1.15;SOR=1.863;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:150,0,115
chr1	206810946	rs17013271	C	T	1537.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;DB;DP=27;ExcessHet=6.9897;FS=4.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.684;SOR=1.347;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:344,0,376
chr1	206901938	rs71633601	G	A	281.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=11;ExcessHet=3.9794;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=1.15;SOR=0.136;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:178,0,156
chr1	206904464	rs10863805	C	T	2771.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DB;DP=79;ExcessHet=3.9794;FS=0.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.175;SOR=0.625;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,38:79:99:1004,0,1048
chr1	206904644	rs58152125	C	CGT	2645.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DB;DP=29;ExcessHet=6.9897;FS=4.309;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.547;SOR=0.359;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,15:29:99:439,0,411
chr1	206905043	rs4073250	C	T	4904.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=110;ExcessHet=6.9897;FS=1.413;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.674;SOR=0.794;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,58:110:99:1592,0,1328
chr1	206941864	rs3024496	A	G	887.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.89;ReadPosRankSum=-2.000e-01;SOR=1.473;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:191,0,168
chr1	206943297	rs3024509	A	G	1266.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DB;DP=45;ExcessHet=3.9794;FS=4.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=1.20;SOR=0.340;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,24:45:99:626,0,552
chr1	206943351	rs3024494	T	C	2357.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=2.505;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:893,78,0
chr1	206944233	rs1554286	A	G	8117.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.04;DB;DP=85;ExcessHet=3.0103;FS=2.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=0.129;SOR=0.897;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2989,255,0
chr1	206944645	rs1518111	T	C	4748.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.95;DB;DP=43;ExcessHet=3.0103;FS=2.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.09;ReadPosRankSum=-6.540e-01;SOR=1.349;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1676,129,0
chr1	206944861	rs1518110	A	C	6820.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=1.19;SOR=0.719;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,66:66:99:1|1:206944845_AT_A:2136,197,0:206944845
chr1	206945046	rs3024491	C	A	33.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=1.609;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr1	206945381	rs2222202	G	A	249.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=0.210;SOR=1.609;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:72:72,0,75
chr1	206972072	rs4845141	C	T	275.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530e-01;DB;DP=11;ExcessHet=3.9794;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=1.36;SOR=1.140;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:58:58,0,225
chr1	207009910	rs2243170	T	C	997.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.200e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=0.189;SOR=0.586;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:424,33,0
chr1	207014472	rs2243188	A	C	7805.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.717e+00;DB;DP=94;ExcessHet=3.0103;FS=6.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=-3.430e-01;SOR=0.333;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3001,282,0
chr1	207014776	rs960326	C	T	930.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=-8.820e-01;SOR=1.075;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr1	207015957	rs2243191	T	C	6279.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=0.799;VQSLOD=19.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1981,183,0
chr1	207016225	rs2243193	A	G	320.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=4.407;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	207040577	rs2981573	G	A	1947.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817e+00;DB;DP=17;ExcessHet=3.0103;FS=2.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=0.782;SOR=1.981;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:212,0,380
chr1	207040659	rs2232360	G	A	5083.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801e+00;DB;DP=75;ExcessHet=3.0103;FS=6.734;MQ=59.88;MQRankSum=-1.503e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=-1.381e+00;SOR=1.333;VQSLOD=0.523;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,35:75:99:904,0,1158
chr1	207074746	.	G	A	365.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.433e+00;DP=30;ExcessHet=3.0103;FS=5.011;MQ=60.00;MQRankSum=0.00;QD=12.18;ReadPosRankSum=-1.352e+00;SOR=0.132;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:374,0,569
chr1	207091138	.	AT	A	194.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.29;ReadPosRankSum=-4.500e-01;SOR=0.486;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:8:36:71,0,36
chr1	207195779	rs2842726	A	G	12230.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=0.736;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4536,432,0
chr1	207201135	.	G	A	249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.66;ReadPosRankSum=0.285;SOR=0.693;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:81:258,0,81
chr1	207225266	rs4844372	T	C	160.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-2.720e-01;SOR=0.446;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,72
chr1	207235954	rs2075863	G	A	3185.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=106;ExcessHet=3.9794;FS=2.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-9.780e-01;SOR=0.840;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,57:106:99:1276,0,1055
chr1	207241440	rs4030464	A	AGTGTGTGTGT	1053.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.75;MQRankSum=0.00;QD=18.49;ReadPosRankSum=-3.600e-01;SOR=0.821;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:17:99:260,0,694
chr1	207243851	rs923109	A	G	1592.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=-7.700e-02;SOR=1.022;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:622,54,0
chr1	207245045	rs11120137	T	C	1016.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.580e-01;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-4.150e-01;SOR=0.646;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:451,0,459
chr1	207245080	rs35425352	A	AT	325.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=1.52;SOR=0.416;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:154,0,155
chr1	207262980	rs12711513	T	G	2559.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=100;ExcessHet=3.9794;FS=3.748;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.02;SOR=0.491;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,51:100:99:1341,0,1343
chr1	207263829	rs6690037	A	G	622.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=63;ExcessHet=3.0103;FS=2.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.380;SOR=0.416;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,25:63:99:631,0,968
chr1	207268779	rs7542292	A	G	1116.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.642e+00;DB;DP=55;ExcessHet=3.0103;FS=13.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=-1.023e+00;SOR=0.030;VQSLOD=14.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,37:55:99:1125,0,600
chr1	207268860	rs7529011	G	A	265.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.164e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=-1.252e+00;SOR=0.818;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:274,0,251
chr1	207269919	rs8942	C	T	4786.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.530e-01;DB;DP=113;ExcessHet=1.5490;FS=1.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=0.850;SOR=0.824;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3462,338,0
chr1	207271387	rs55926923	G	T	806.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304e+00;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.49;SOR=0.648;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,32:65:99:815,0,980
chr1	207273399	rs72742917	A	G	67.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.72;SOR=2.303;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	207286381	rs55867570	C	A	391.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=11;ExcessHet=3.9794;FS=2.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=1.92;SOR=1.292;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:16:197,0,16
chr1	207286671	rs74633105	T	A	57.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,73
chr1	207288258	rs147553990	T	C	76.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-02;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=-1.383e+00;SOR=1.022;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:85:85,0,181
chr1	207288897	rs12031629	T	C	1431.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.68;DB;DP=32;ExcessHet=3.9794;FS=10.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=0.908;SOR=1.973;VQSLOD=17.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,23:32:99:743,0,291
chr1	207297680	rs1126618	T	C	5152.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.280e-01;DB;DP=68;ExcessHet=3.0103;FS=3.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=-2.370e-01;SOR=0.467;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1892,204,0
chr1	207300259	rs2491393	A	G	6426.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.852e+00;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.97;ReadPosRankSum=-3.000e-02;SOR=0.701;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2896,257,0
chr1	207300381	rs2491394	T	A	872.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.33;ReadPosRankSum=1.12;SOR=3.180;VQSLOD=18.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:250,0,105
chr1	207304900	rs4844573	T	C	1931.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.568e+00;DB;DP=31;ExcessHet=0.4576;FS=5.477;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=-1.063e+00;SOR=1.939;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,30:31:49:971,49,0
chr1	207495427	rs7533852	G	T	550.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.40;ReadPosRankSum=0.598;SOR=0.776;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
chr1	207500293	rs4844591	C	T	1778.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=2.833;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:306,24,0
chr1	207504669	rs2184476	G	A	4291.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=2.494;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1200,111,0
chr1	207504748	rs1507757	C	A	1350.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.20;SOR=7.054;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
chr1	207510289	rs2490257	T	C	7760.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.12;SOR=2.655;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2118,174,0
chr1	207510548	rs10746462	A	G	1790.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.64;SOR=4.125;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
chr1	207510596	rs10746463	G	A	4347.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.99;SOR=3.538;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:921,84,0
chr1	207511004	rs55690559	T	TA	201.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.76;ReadPosRankSum=-1.036e+00;SOR=1.981;VQSLOD=5.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:78,9,0
chr1	207512577	rs10641442	T	TTAA	1740.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.34;SOR=7.328;VQSLOD=6.79;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:36:540,36,0
chr1	207532861	rs56253023	C	CTT,CTTT	1553.05	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.400e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.27;MQRankSum=-7.240e-01;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.702;SOR=0.925;VQSLOD=1.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,19,12:42:18:730,18,118,160,0,359
chr1	207639695	rs311311	C	G	956.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=6.273;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:350,24,0
chr1	207640345	rs1032980	G	T	430.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=3.611;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr1	207643949	rs10863322	G	A	597.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.02;SOR=5.549;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	207653395	rs17617	C	A	8117.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=0.814;VQSLOD=17.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2711,278,0
chr1	207679229	rs4844599	T	G	1002.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-2.038e+00;SOR=0.662;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,38:80:99:1011,0,1214
chr1	207679307	rs4844600	A	G	14027.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.500e-01;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.32;ReadPosRankSum=1.26;SOR=1.238;VQSLOD=6.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:3934,384,0
chr1	207726288	.	C	CT	57.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DP=5;ExcessHet=3.0103;FS=0.000;MQ=25.00;MQRankSum=0.00;QD=11.46;ReadPosRankSum=0.524;SOR=0.446;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,103
chr1	207737670	rs112003672	GAC	G	247.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-02;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.82;MQRankSum=-4.310e-01;QD=20.60;ReadPosRankSum=-1.154e+00;SOR=1.445;VQSLOD=-1.247e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:79:256,0,79
chr1	207739127	rs3886100	A	G	3684.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=37;ExcessHet=3.0103;FS=3.496;MQ=59.91;MQRankSum=1.03;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.44;ReadPosRankSum=-9.420e-01;SOR=2.334;VQSLOD=0.311;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,18:37:99:674,0,602
chr1	207748793	rs650877	A	G	2995.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=87;ExcessHet=3.9794;FS=2.156;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=1.16;SOR=0.899;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,52:87:99:1478,0,845
chr1	207753345	rs2274566	C	T	1188.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208e+00;DB;DP=10;ExcessHet=3.9794;FS=3.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.85;ReadPosRankSum=-2.100e-01;SOR=2.007;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:176,0,137
chr1	207753621	rs2274567	A	G	643.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.144e+00;DB;DP=54;ExcessHet=3.0103;FS=7.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=1.29;SOR=1.349;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,23:54:99:652,0,967
chr1	207757936	rs646817	A	G	634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-01;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-1.510e-01;SOR=0.811;VQSLOD=6.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,14:36:99:370,0,609
chr1	207758232	rs1752688	A	G	4811.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=183;ExcessHet=3.9794;FS=2.901;MQ=59.92;MQRankSum=1.17;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.696;SOR=0.555;VQSLOD=2.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,105:183:99:2568,0,1957
chr1	207760773	rs3737002	C	T	6027.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=76;ExcessHet=3.9794;FS=2.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=1.21;SOR=0.539;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1073,0,903
chr1	207782707	rs17259045	A	G	2086.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=81;ExcessHet=3.9794;FS=5.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=1.14;SOR=1.058;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,35:81:99:973,0,1133
chr1	207782916	rs4844609	A	T	7974.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.091;VQSLOD=4.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2496,249,0
chr1	207782931	rs6691117	A	G	1605.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=76;ExcessHet=3.9794;FS=3.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-3.880e-01;SOR=0.487;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:903,0,913
chr1	207784968	rs3818361	A	G	6224.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.875;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=-2.920e-01;SOR=0.736;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2478,234,0
chr1	207790088	rs3811381	C	G	2574.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.361e+00;DB;DP=214;ExcessHet=3.0103;FS=1.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-1.167e+00;SOR=0.804;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,111:214:99:2583,0,2591
chr1	207795320	rs2296160	A	G	8202.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=0.945;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2432,231,0
chr1	207804141	rs1408077	A	C	1232.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.41;SOR=6.804;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:387,27,0
chr1	207818719	rs11118237	G	A	1711.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410e-01;DB;DP=167;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.381;SOR=0.693;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,70:167:99:1720,0,2555
chr1	207850539	rs11118328	C	T	646.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=3.258;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:207850539_C_T:90,6,0:207850539
chr1	207850560	rs67422482	A	G	119.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.85;SOR=2.833;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:207850539_C_T:135,9,0:207850539
chr1	207850589	rs34451130	A	C	119.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.97;SOR=2.833;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:207850539_C_T:135,9,0:207850539
chr1	207850652	rs57151160	CAAAAAA	C	492.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DB;DP=16;ExcessHet=6.9897;FS=14.081;MQ=58.04;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=1.39;SOR=3.309;VQSLOD=0.345;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:16:83:408,0,83
chr1	207851169	rs2296156	T	C	146.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=58.31;MQRankSum=-4.310e-01;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=0.842;SOR=1.329;VQSLOD=0.212;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:67:155,0,67
chr1	207851361	rs12125256	C	T	49.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=55.03;MQRankSum=-1.981e+00;NEGATIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=0.712;SOR=0.223;VQSLOD=-3.212e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,191
chr1	207851611	rs2296158	A	G	1470.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544e+00;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-3.150e-01;SOR=0.659;VQSLOD=6.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,59:102:99:1479,0,1079
chr1	207851760	rs2296159	G	A	356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-1.099e+00;SOR=0.976;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:365,0,453
chr1	207857158	rs12411037	T	C	974.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.610;SOR=0.693;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,39:78:99:983,0,978
chr1	207872835	rs41308433	A	C	4772.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.68;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.93;ReadPosRankSum=-1.030e-01;SOR=0.853;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:794,0,577
chr1	207875175	rs4844614	G	T	2743.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.67;ReadPosRankSum=1.36;SOR=2.400;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:358,0,236
chr1	207881485	rs11302038	TA	T	2302.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940e-01;DB;DP=156;ExcessHet=3.0103;FS=0.599;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-6.210e-01;SOR=0.758;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:94,62:156:99:0|1:207881485_TA_T:2311,0,5604:207881485
chr1	207881489	rs35438924	T	G	2347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DB;DP=158;ExcessHet=3.0103;FS=0.000;MQ=59.77;MQRankSum=0.00;QD=14.86;ReadPosRankSum=-6.130e-01;SOR=0.663;VQSLOD=4.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:95,63:158:99:0|1:207881485_TA_T:2356,0,5590:207881485
chr1	207881491	rs34277355	C	A	2347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316e+00;DB;DP=157;ExcessHet=3.0103;FS=0.597;MQ=59.77;MQRankSum=0.00;QD=14.95;ReadPosRankSum=-1.030e-01;SOR=0.749;VQSLOD=4.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:96,61:157:99:0|1:207881485_TA_T:2356,0,5590:207881485
chr1	207881557	rs6683902	A	G	1051.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.760e-01;DB;DP=113;ExcessHet=3.0103;FS=0.723;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-1.050e-01;SOR=0.800;VQSLOD=4.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,46:113:99:1060,0,1770
chr1	207888626	rs6677310	C	T	3113.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DB;DP=63;ExcessHet=6.9897;FS=4.667;MQ=59.11;MQRankSum=-2.680e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-2.000e-02;SOR=0.994;VQSLOD=-4.447e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,29:63:99:739,0,828
chr1	207888704	rs2796255	T	C	4210.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.396e+00;DB;DP=96;ExcessHet=6.9897;FS=1.763;MQ=58.16;MQRankSum=-4.000e-03;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-2.860e-01;SOR=0.798;VQSLOD=-2.290e-02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1210,0,1262
chr1	207888739	rs7553211	G	T	1395.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=110;ExcessHet=3.0103;FS=0.700;MQ=59.28;MQRankSum=2.55;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-1.500e+00;SOR=0.622;VQSLOD=0.094;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,58:110:99:1404,0,1891
chr1	207888760	rs2796261	C	T	9147.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=103;ExcessHet=3.0103;FS=7.289;MQ=58.41;MQRankSum=-3.127e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=0.889;SOR=0.951;VQSLOD=-3.081e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:55,48:103:99:1117,0,2124
chr1	207890866	rs2796257	T	C	10835.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=176;ExcessHet=3.9794;FS=3.576;MQ=59.37;MQRankSum=-1.234e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=1.54;SOR=0.467;VQSLOD=-2.038e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:98,78:176:99:2031,0,2550
chr1	207933318	rs11370836	C	CA	57.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:28:66,0,28
chr1	207934487	rs2466572	A	C	186.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=58.25;MQRankSum=0.00;QD=14.38;ReadPosRankSum=1.38;SOR=0.569;VQSLOD=-8.283e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:41:66,0,41
chr1	207934849	rs4844390	A	G	2607.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.130e-01;DB;DP=55;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.219;SOR=0.716;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,22:55:99:539,0,926
chr1	207941191	rs2724374	G	T	1059.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.040;SOR=0.575;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:460,0,227
chr1	207956559	rs1962149	G	A	2082.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.06;ReadPosRankSum=-5.280e-01;SOR=0.776;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:177,0,186
chr1	207959070	rs11118580	T	C	3380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=74;ExcessHet=6.9897;FS=1.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.460;SOR=0.574;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:831,0,989
chr1	207959122	.	CTTTT	C,CT	4597.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.15;SOR=2.992;VQSLOD=5.51;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,11,13:24:99:974,407,370,391,0,330
chr1	207959136	rs373519619	T	TAA,TAAA	4603.05	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.62;SOR=3.000;VQSLOD=3.41;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,13,11:24:99:976,393,333,406,0,346
chr1	207975949	rs56075814	T	C	2298.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=44;ExcessHet=6.9897;FS=2.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-3.220e-01;SOR=0.927;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:553,0,570
chr1	207992546	rs12123251	G	A	2120.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=34;ExcessHet=3.9794;FS=17.179;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=0.111;SOR=2.703;VQSLOD=11.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:673,0,294
chr1	208050484	rs2745946	T	C	368.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.69;ReadPosRankSum=0.135;SOR=0.818;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:208050484_T_C:180,12,0:208050484
chr1	208050487	rs2785640	G	C	368.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.69;ReadPosRankSum=0.135;SOR=0.818;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:208050484_T_C:180,12,0:208050484
chr1	208061530	rs2235766	A	G	367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=41;ExcessHet=3.0103;FS=6.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.96;ReadPosRankSum=0.174;SOR=1.582;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,16:41:99:376,0,612
chr1	208062260	rs2745952	T	C	3343.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=32;ExcessHet=3.0103;FS=1.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.44;ReadPosRankSum=0.575;SOR=1.508;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1139,96,0
chr1	208063100	rs5780411	G	GA	1664.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.120e-01;DB;DP=34;ExcessHet=3.9794;FS=3.445;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-3.660e-01;SOR=1.022;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,32:34:51:785,51,0
chr1	208072626	rs12029239	A	C	1362.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=0.807;SOR=0.749;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,18:26:99:674,0,214
chr1	208072738	rs2724369	A	C	238.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=3.912;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr1	208084512	rs55864664	C	G	2416.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DB;DP=180;ExcessHet=3.0103;FS=1.249;MQ=60.00;MQRankSum=0.00;QD=13.42;ReadPosRankSum=-1.388e+00;SOR=0.569;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,92:180:99:2425,0,2332
chr1	208201070	rs657778	T	C	869.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.21;ReadPosRankSum=1.92;SOR=1.473;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr1	208204794	rs76190764	CTGTT	C	2450.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=47;ExcessHet=3.9794;FS=3.082;MQ=59.89;MQRankSum=0.00;QD=20.94;ReadPosRankSum=1.53;SOR=0.394;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,35:47:99:1391,0,618
chr1	208204919	rs138753762	C	A	2054.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090e+00;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-3.011e+00;SOR=0.723;VQSLOD=21.76;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:60,79:139:99:2063,0,1475
chr1	208206946	rs6702082	C	G	521.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DB;DP=15;ExcessHet=3.9794;FS=6.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.52;SOR=1.973;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:242,0,253
chr1	208207045	rs1193090	T	C	527.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.74;ReadPosRankSum=0.524;SOR=3.126;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr1	208207839	rs3736963	G	A	1876.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.74;DB;DP=80;ExcessHet=3.9794;FS=10.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.301;SOR=1.395;VQSLOD=18.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,35:80:99:946,0,1048
chr1	208208034	rs12128144	G	C	1198.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214e+00;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.118;SOR=0.752;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,24:48:99:597,0,649
chr1	208208124	rs6540448	C	A	266.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.9794;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-8.420e-01;SOR=0.124;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,149
chr1	208211850	rs148452011	G	A	948.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=2.72;SOR=0.824;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:957,0,854
chr1	208211887	rs905100	T	C	4513.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.580;DB;DP=36;ExcessHet=3.0103;FS=3.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.71;ReadPosRankSum=-1.418e+00;SOR=0.334;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1379,108,0
chr1	208212129	rs151009737	T	C	829.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=58;ExcessHet=3.0103;FS=2.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-2.833e+00;SOR=0.460;VQSLOD=21.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,30:58:99:838,0,694
chr1	208213125	rs1751580	A	G	15692.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=225;ExcessHet=3.0103;FS=1.489;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=-9.160e-01;SOR=0.794;VQSLOD=6.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,225:225:99:6878,674,0
chr1	208213241	rs41283118	C	T	2687.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=172;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.177;SOR=0.690;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,93:172:99:2696,0,1998
chr1	208213308	rs137999984	G	T	2720.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=195;ExcessHet=3.0103;FS=0.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-2.043e+00;SOR=0.714;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,100:195:99:2729,0,2270
chr1	208216304	rs2274448	C	A	311.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.22;ReadPosRankSum=1.07;SOR=1.329;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,145
chr1	208219164	rs1536471	A	C	3055.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.50;DB;DP=43;ExcessHet=3.9794;FS=0.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=-1.550e-01;SOR=0.862;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1615,129,0
chr1	208219545	rs74152180	T	C	1150.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=29;ExcessHet=3.9794;FS=3.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.101;SOR=0.210;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:477,0,495
chr1	208224579	rs139169481	T	A	346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-02;DB;DP=23;ExcessHet=3.0103;FS=3.976;MQ=60.00;MQRankSum=0.00;QD=15.05;ReadPosRankSum=2.37;SOR=0.180;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:355,0,341
chr1	208224955	rs1555948	G	C	763.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e+00;DB;DP=34;ExcessHet=3.9794;FS=1.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.09;SOR=0.404;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,18:34:99:0|1:208224955_G_C:477,0,430:208224955
chr1	208224957	rs681429	C	T	2475.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.783e+00;DB;DP=34;ExcessHet=3.0103;FS=1.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.74;ReadPosRankSum=0.217;SOR=0.404;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,34:34:99:1|1:208224955_G_C:1329,102,0:208224955
chr1	208234228	rs41283122	C	G	2144.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.760e-01;DB;DP=189;ExcessHet=3.0103;FS=3.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-1.093e+00;SOR=0.968;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,88:189:99:2153,0,2600
chr1	208252489	rs2274445	T	C	1662.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=68;ExcessHet=3.9794;FS=9.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.58;SOR=1.428;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,28:68:99:689,0,929
chr1	208255877	rs6540453	T	C	3954.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.574e+00;DB;DP=65;ExcessHet=3.9794;FS=2.032;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=1.32;SOR=0.545;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2118,195,0
chr1	208258102	rs10159299	T	C	631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.152;SOR=0.223;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:308,0,175
chr1	208266469	rs2478805	G	T	626.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.484e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.49;ReadPosRankSum=-1.637e+00;SOR=2.303;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	208269831	rs2274443	T	C	271.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=-5.240e-01;SOR=1.179;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:109,0,72
chr1	208276399	rs10654695	C	CCTCT	9970.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.400e-01;DB;DP=77;ExcessHet=3.0103;FS=5.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.67;ReadPosRankSum=0.690;SOR=0.357;VQSLOD=6.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3534,237,0
chr1	208390086	rs1664227	G	C	8423.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338e+00;DB;DP=181;ExcessHet=1.5490;FS=4.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=0.137;SOR=0.478;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,95:181:99:2341,0,2381
chr1	208391085	rs12120681	G	A	2164.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=214;ExcessHet=3.0103;FS=1.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.758;SOR=0.587;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,88:214:99:2173,0,3196
chr1	208391254	rs2782948	C	T	5705.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=114;ExcessHet=1.5490;FS=4.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=0.618;SOR=0.413;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,59:114:99:1526,0,1484
chr1	208391713	rs57226775	C	T	70.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.08;SOR=2.303;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	209346731	rs10863758	G	A	1164.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=29;ExcessHet=3.9794;FS=0.889;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=1.03;SOR=0.582;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,13:29:99:387,0,456
chr1	209602886	rs5780516	C	CA	885.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.250e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-3.070e-01;SOR=2.030;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:301,36,0
chr1	209603996	rs2294938	A	G	3311.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.967e+00;DB;DP=42;ExcessHet=3.0103;FS=6.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.67;ReadPosRankSum=0.102;SOR=1.515;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1345,126,0
chr1	209605636	rs3842530	TAGCAGCAGCAGC	T	3447.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.971;POSITIVE_TRAIN_SITE;QD=32.13;ReadPosRankSum=0.176;SOR=0.641;VQSLOD=1.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:80:1151,80,0
chr1	209773633	rs10641906	A	ATT	191.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:27:61,0,27
chr1	209779805	rs880783	G	A	524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DB;DP=45;ExcessHet=3.0103;FS=1.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=1.44;SOR=1.022;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:533,0,553
chr1	209781417	rs143460578	T	TAC	1271.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=7;ExcessHet=3.9794;FS=2.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.89;ReadPosRankSum=-7.120e-01;SOR=0.182;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:46:46,0,148
chr1	209792015	rs5780528	A	AC	17140.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.72;SOR=1.799;VQSLOD=5.32;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,141:141:99:1|1:209792015_A_AC:5789,424,0:209792015
chr1	209792018	rs199838217	C	T	2062.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.17;DB;DP=139;ExcessHet=3.0103;FS=1.435;MQ=59.89;MQRankSum=1.04;QD=14.84;ReadPosRankSum=0.622;SOR=0.900;VQSLOD=0.741;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:68,71:139:99:0|1:209792015_A_AC:2071,0,1607:209792015
chr1	209798771	rs9430008	G	A	1100.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.560e+00;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=0.691;SOR=1.085;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:737,66,0
chr1	209799253	rs2179402	A	G	13175.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.22;SOR=0.843;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4451,408,0
chr1	209801110	rs61822212	C	T	2213.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.44;SOR=6.630;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2230,166,0
chr1	209804095	rs4844863	G	A	5013.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=2.633;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1423,129,0
chr1	209807972	rs1130667	G	A	2930.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=1.396;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2947,282,0
chr1	209811595	rs2072941	T	C	288.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.91;SOR=1.609;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:305,21,0
chr1	209811886	rs2076356	T	G	5874.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=110;ExcessHet=3.9794;FS=1.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.914;SOR=0.795;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3260,329,0
chr1	209812063	rs2076357	T	C	2612.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.09;DB;DP=46;ExcessHet=3.9794;FS=1.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=-7.490e-01;SOR=0.934;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1687,138,0
chr1	209849002	rs3817870	T	C	8462.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.565;DB;DP=113;ExcessHet=3.0103;FS=2.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=0.763;SOR=0.555;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3464,339,0
chr1	209849399	rs3830766	AG	A	4865.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.108e+00;DB;DP=46;ExcessHet=3.0103;FS=10.195;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.05;ReadPosRankSum=-7.200e-02;SOR=0.178;VQSLOD=3.67;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,46:46:99:1|1:209849399_AG_A:2045,138,0:209849399
chr1	209849406	rs1473683	T	G	5996.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.99;SOR=1.737;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:209849399_AG_A:1970,132,0:209849399
chr1	209950681	rs649275	T	C	3691.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.10;SOR=1.219;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1309,126,0
chr1	209950760	rs669694	C	G	5007.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.16;SOR=0.878;VQSLOD=4.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1939,180,0
chr1	209952865	rs623360	C	G	674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.462e+00;DB;DP=23;ExcessHet=3.9794;FS=1.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-1.230e-01;SOR=0.428;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:323,0,367
chr1	209953706	rs11590807	C	T	186.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=1.44;SOR=1.609;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:73:73,0,99
chr1	209965587	rs2235375	G	C	6877.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=164;ExcessHet=3.9794;FS=2.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=-2.350e-01;SOR=0.841;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,83:164:99:1975,0,1932
chr1	209968319	rs6685182	A	C	164.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.930e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.414;SOR=1.911;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	209968411	rs2013196	C	T	1805.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.104e+00;DB;DP=26;ExcessHet=6.9897;FS=3.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=1.13;SOR=0.380;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:373,0,407
chr1	209968684	rs2013162	C	A	7379.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=121;ExcessHet=3.9794;FS=5.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=0.922;SOR=0.983;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,68:121:99:1839,0,1234
chr1	209969902	rs7552506	G	C	1008.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=17;ExcessHet=6.9897;FS=1.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=1.85;SOR=0.967;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:173,0,377
chr1	210001233	rs661849	C	T	934.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=6.358;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr1	210001543	rs12404886	A	T	3728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358e+00;DB;DP=74;ExcessHet=6.9897;FS=2.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-9.060e-01;SOR=0.883;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,34:74:99:859,0,1133
chr1	210001586	rs616227	A	G	1586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353e+00;DB;DP=47;ExcessHet=3.9794;FS=5.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.413;SOR=0.317;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,32:47:99:905,0,424
chr1	210001713	rs674346	C	A	307.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=-2.530e-01;SOR=0.346;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:66:178,0,66
chr1	210003388	rs599663	A	C	1366.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=54;ExcessHet=3.9794;FS=3.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=1.36;SOR=1.075;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:612,0,684
chr1	210003402	rs599649	T	C	4701.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.487e+00;DB;DP=63;ExcessHet=3.0103;FS=6.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=2.06;SOR=0.288;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1939,188,0
chr1	210004199	rs585627	C	G	7251.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.811;DB;DP=91;ExcessHet=3.0103;FS=1.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=0.627;SOR=0.836;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2980,273,0
chr1	210004613	rs627069	C	G	235.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=2.584;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr1	210004626	rs627087	A	G	159.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=1.981;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr1	210006371	rs4240837	T	G	32.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:35:39,0,35
chr1	210006437	rs655712	G	A	766.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.613;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=-7.120e-01;SOR=0.638;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:210006437_G_A:405,27,0:210006437
chr1	210006438	rs655713	C	T	766.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=-7.000e-01;SOR=0.638;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:210006437_G_A:405,27,0:210006437
chr1	210006603	rs656566	C	T	6937.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=63;ExcessHet=3.0103;FS=2.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=0.153;SOR=0.887;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2030,189,0
chr1	210006873	rs657844	T	G	830.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-8.600e-01;SOR=1.765;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr1	210006884	rs657861	C	G	555.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=-1.611e+00;SOR=2.093;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:135,12,0
chr1	210008367	rs685248	C	G	4876.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=42;ExcessHet=3.0103;FS=2.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.10;ReadPosRankSum=0.507;SOR=1.068;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:210008367_C_G:1632,129,0:210008367
chr1	210008374	rs41274838	C	T	2643.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e-01;DB;DP=44;ExcessHet=6.9897;FS=0.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.908;SOR=0.827;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,20:44:99:0|1:210008367_C_G:603,0,674:210008367
chr1	210008673	rs686582	T	G	1863.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.968e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=1.16;SOR=0.582;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:609,48,0
chr1	210012102	rs1962735	A	G	6357.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.00;SOR=1.392;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1862,165,0
chr1	210014093	rs654470	A	T	484.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.49;SOR=5.283;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr1	210014603	rs674804	C	G	741.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.86;SOR=5.994;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:301,24,0
chr1	210015568	rs10570454	GCT	G	9235.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.17;DB;DP=72;ExcessHet=3.0103;FS=2.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.84;ReadPosRankSum=-7.540e-01;SOR=1.909;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,70:72:99:2190,167,0
chr1	210111733	rs12025114	G	A	4931.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.742e+00;DB;DP=117;ExcessHet=1.5490;FS=0.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=1.00;SOR=0.620;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3849,348,0
chr1	210139069	rs10779518	G	A	367.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.750e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.50;ReadPosRankSum=-4.640e-01;SOR=2.147;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	210407339	rs34824193	T	A	2977.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=39;ExcessHet=1.5490;FS=1.457;MQ=60.00;MQRankSum=0.00;QD=33.46;ReadPosRankSum=-6.890e-01;SOR=0.882;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,18:39:99:453,0,573
chr1	210411266	rs11347154	GT	G	417.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;DB;DP=35;ExcessHet=3.0103;FS=2.651;MQ=60.00;MQRankSum=0.00;QD=11.92;ReadPosRankSum=-5.680e-01;SOR=1.030;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,22:35:99:426,0,249
chr1	210439986	.	C	CAAA	155.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.36;MQRankSum=0.00;QD=11.13;ReadPosRankSum=-1.036e+00;SOR=0.976;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:53:53,0,84
chr1	210522080	.	C	CGTGTGTGT	1431	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.560e-01;DP=15;ExcessHet=3.9794;FS=1.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=0.178;SOR=0.466;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,3:15:99:127,0,641
chr1	210536025	rs7527939	C	T	761.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.225e+00;DB;DP=58;ExcessHet=3.0103;FS=2.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.191e+00;SOR=0.342;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,30:58:99:770,0,858
chr1	210536078	rs2294848	C	G	4901.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=107;ExcessHet=3.9794;FS=0.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=-9.560e-01;SOR=0.646;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,59:107:99:1423,0,1261
chr1	210560682	rs3215543	A	AAT	390.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e-01;DB;DP=17;ExcessHet=3.0103;FS=6.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.96;ReadPosRankSum=0.391;SOR=0.061;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,10:17:99:399,0,281
chr1	210574267	rs4844526	G	T	567.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.33;ReadPosRankSum=0.967;SOR=3.258;VQSLOD=18.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:77,0,30
chr1	210577873	rs2066721	G	C	4163.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=76;ExcessHet=3.9794;FS=0.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=1.05;SOR=0.752;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,30:76:99:762,0,1091
chr1	210591742	rs3215542	TG	T	3341.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=0.483;SOR=0.837;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,31:50:99:837,0,450
chr1	210686570	rs4545340	A	G	6984.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.870;DB;DP=70;ExcessHet=3.0103;FS=6.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=0.011;SOR=1.270;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2097,208,0
chr1	210686614	rs12142231	A	G	2405.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=45;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-5.970e-01;SOR=0.735;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1450,134,0
chr1	210761462	rs4297293	G	C	5794.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=5.196;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1996,147,0
chr1	210804430	rs4951682	G	A	667.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931e+00;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.387e+00;SOR=0.752;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:676,0,652
chr1	210847314	rs7520525	T	A	98.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=54.16;QD=32.80;SOR=2.833;VQSLOD=2.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr1	210847514	rs1934615	A	T	670.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.774;SOR=0.650;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,26:58:99:679,0,847
chr1	210856585	rs3135473	G	T	1925.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433e+00;DB;DP=81;ExcessHet=3.9794;FS=0.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.288;SOR=0.801;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1078,0,979
chr1	210857457	rs1135317	A	G	2930.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.231e+00;DB;DP=75;ExcessHet=1.5490;FS=0.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=0.795;SOR=0.602;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,45:75:99:1135,0,824
chr1	210948383	rs1114880	C	T	103.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=2.833;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr1	210970823	rs142798110	T	TG	1623.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.707;SOR=0.783;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1632,0,1522
chr1	211192707	rs11119658	G	A	757.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=31;ExcessHet=3.9794;FS=3.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-4.650e-01;SOR=1.467;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:337,0,561
chr1	211192794	rs4951704	T	C	426.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=0.00;SOR=0.264;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:70:70,0,152
chr1	211276828	rs3762452	C	T	811.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.522e+00;DB;DP=82;ExcessHet=3.0103;FS=1.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=1.32;SOR=0.473;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,38:82:99:820,0,1087
chr1	211280873	rs17188881	T	C	271.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.14;ReadPosRankSum=-1.732e+00;SOR=2.093;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:51:280,0,51
chr1	211307033	.	G	C	201.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DP=10;ExcessHet=3.9794;FS=2.521;MQ=59.96;MQRankSum=0.00;QD=6.10;ReadPosRankSum=1.06;SOR=1.585;VQSLOD=3.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,3:10:27:0|1:211307033_G_C:27,0,331:211307033
chr1	211307038	.	G	C	199.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070e-01;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=5.38;ReadPosRankSum=1.60;SOR=0.804;VQSLOD=4.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,3:11:25:0|1:211307033_G_C:25,0,338:211307033
chr1	211433737	rs4951734	G	T	342.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=4.615;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	211441034	rs6540675	G	A	654.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=1.863;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	211444345	rs10746434	T	C	888.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=4.892;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:326,27,0
chr1	211447435	rs5780634	CT	C	1829.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.91;ReadPosRankSum=1.68;SOR=5.640;VQSLOD=0.839;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:431,45,0
chr1	211447625	rs11580084	G	A	13522.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=0.731;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3654,340,0
chr1	211449451	rs10732682	A	G	1097.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=6.593;VQSLOD=24.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:378,27,0
chr1	211452529	rs10708960	TA	T	1285.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.750e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=-1.930e-01;SOR=0.548;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,21:23:19:477,19,0
chr1	211452678	rs3767377	G	A	6105.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=0.965;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1489,146,0
chr1	211452728	rs3767378	G	A	3785.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=2.012;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:874,75,0
chr1	211477742	rs6692815	C	T	267.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.16;SOR=4.174;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	211527609	rs7530570	C	A	1558.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.88;SOR=4.565;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:520,39,0
chr1	211529569	rs7550702	T	C	1418.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.21;SOR=7.112;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr1	211530044	rs4951523	T	G	2454.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=0.290;SOR=6.804;VQSLOD=24.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,11:12:26:441,26,0
chr1	211545442	.	CT	C	2267.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.63;DP=33;ExcessHet=3.0103;FS=1.753;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=0.287;SOR=1.270;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,32:33:88:800,88,0
chr1	211652793	rs17017534	C	T	1812.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.165e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=0.756;SOR=1.512;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:371,0,293
chr1	211654216	rs4951525	A	G	679.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=0.524;SOR=0.504;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:113,0,106
chr1	211832096	rs146064437	GA	G	48.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=50.99;QD=24.47;SOR=2.303;VQSLOD=3.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:60,6,0
chr1	211836789	rs12031285	T	C	2465.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=0.744;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2482,234,0
chr1	211837396	rs11119789	C	T	67.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=2.303;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	211840498	rs2230489	T	C	1002.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.77;SOR=0.997;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1019,84,0
chr1	211842808	rs697004	A	C	726.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.28;ReadPosRankSum=2.10;SOR=0.976;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:269,18,0
chr1	211846876	rs701929	A	G	15053.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.256e+00;DB;DP=200;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=-5.070e-01;SOR=0.797;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,200:200:99:5827,599,0
chr1	211960797	rs12122929	G	A	164.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,96
chr1	211960831	.	CAA	C	132.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DP=6;ExcessHet=6.9897;FS=3.698;MQ=59.44;MQRankSum=0.00;QD=4.74;ReadPosRankSum=0.00;SOR=1.483;VQSLOD=5.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:73:77,0,73
chr1	212142054	rs11322485	GA	G	2030.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=38;ExcessHet=3.0103;FS=1.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.837;SOR=1.302;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,36:38:99:941,113,0
chr1	212152044	rs77214366	TAAC	T	141.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-1.026e+00;SOR=1.329;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:150,0,303
chr1	212190116	rs2993531	A	C	723.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=-8.760e-01;SOR=3.716;VQSLOD=16.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr1	212193383	rs12123762	A	G	1099.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DB;DP=59;ExcessHet=3.0103;FS=2.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=1.08;SOR=0.361;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,35:59:99:1108,0,763
chr1	212209367	rs3215984	T	TC	884.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.685;SOR=0.510;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,15:36:99:425,0,641
chr1	212217971	rs35704923	C	CTT	5316.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.118e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.75;ReadPosRankSum=0.501;SOR=0.714;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1796,123,0
chr1	212220847	rs2970592	G	A	1582.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.53;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.78;ReadPosRankSum=0.154;SOR=1.022;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:450,33,0
chr1	212236157	rs4951436	G	T	3668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=2.193;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1118,99,0
chr1	212245344	rs12145020	A	G	572.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DB;DP=22;ExcessHet=3.9794;FS=1.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.282;SOR=0.357;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:167,0,494
chr1	212251103	rs6658972	A	G	1446.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=3.258;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:363,33,0
chr1	212251367	rs5780675	GT	G	1539.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.05;SOR=3.056;VQSLOD=6.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:200,21,0
chr1	212273639	rs3135474	C	T	9205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=0.810;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3642,354,0
chr1	212274413	rs6540718	A	C	4311.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.773;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1014,84,0
chr1	212274503	rs11422325	C	CT	412.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=15.86;ReadPosRankSum=0.00;SOR=2.546;VQSLOD=4.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:11:70,0,11
chr1	212276023	rs12125159	A	T	432.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=0.405;SOR=1.493;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:54:215,0,54
chr1	212276276	rs17853180	A	G	539.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.844;SOR=0.859;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:548,0,454
chr1	212515613	rs1774249	C	T	3556.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=69;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=2.03;SOR=0.677;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,27:69:99:594,0,1008
chr1	212521639	rs701908	T	G	4235.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.652;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=1.69;SOR=0.703;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1287,108,0
chr1	212526288	rs792442	C	T	11620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e-01;DB;DP=143;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=-9.400e-01;POSITIVE_TRAIN_SITE;QD=26.17;ReadPosRankSum=0.460;SOR=0.688;VQSLOD=2.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4633,429,0
chr1	212530192	rs792439	T	C	7588.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=1.241;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2331,207,0
chr1	212553111	rs701905	G	C	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.322e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=1.45;SOR=0.874;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:423,0,407
chr1	212560327	rs792449	A	G	12330.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=1.188;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4020,393,0
chr1	212584183	rs12239580	C	T	145.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=3.258;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	212587530	.	T	C	233.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534e+00;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.66;ReadPosRankSum=-4.920e-01;SOR=0.693;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:242,0,320
chr1	212588206	rs518793	C	G	2584.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.19;DB;DP=164;ExcessHet=3.0103;FS=4.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=1.51;SOR=0.346;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,86:164:99:2593,0,2217
chr1	212615875	rs521469	T	C	3502.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=87;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=-1.853e+00;SOR=0.737;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,48:87:99:1217,0,888
chr1	212616080	rs150643811	C	CATTTT	221.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.66;ReadPosRankSum=-2.100e+00;SOR=1.863;VQSLOD=4.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:99:230,0,109
chr1	212617829	rs2275712	C	G	459.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480e-01;DB;DP=48;ExcessHet=3.0103;FS=1.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-2.502e+00;SOR=1.085;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,17:48:99:468,0,938
chr1	212617860	.	CGTGT	C	794.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DP=15;ExcessHet=1.5490;FS=2.403;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=0.184;SOR=1.911;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:15:99:278,0,217
chr1	212617909	rs71644492	GTA	G	259.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=17;ExcessHet=1.5490;FS=2.155;MQ=60.00;MQRankSum=0.00;QD=6.66;ReadPosRankSum=1.31;SOR=1.569;VQSLOD=5.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,6:17:99:213,0,396
chr1	212619339	rs4804	T	C	3598.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e-01;DB;DP=86;ExcessHet=1.5490;FS=5.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=-9.120e-01;SOR=1.142;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,42:86:99:969,0,1006
chr1	212788567	rs2229346	C	T	6174.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=127;ExcessHet=1.5490;FS=0.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=0.446;SOR=0.631;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,60:127:99:1604,0,1808
chr1	212791288	rs3839030	CGT	C	439.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=5;ExcessHet=3.0103;FS=5.798;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.40;ReadPosRankSum=1.07;SOR=3.611;VQSLOD=4.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:166,15,0
chr1	212791621	rs8192660	T	C	435.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=0.674;SOR=0.430;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:75:76,0,75
chr1	212798601	rs17019481	C	A	9338.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DB;DP=185;ExcessHet=1.5490;FS=2.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=-2.300e-02;SOR=0.563;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,95:185:99:2386,0,2233
chr1	212799139	rs146657378	A	G	2566.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DB;DP=201;ExcessHet=3.0103;FS=1.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.383;SOR=0.862;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,98:201:99:2575,0,2547
chr1	212799870	rs3122713	A	G	11723.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=0.727;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,178:178:99:5648,533,0
chr1	212799949	rs3795842	C	T	2159.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=165;ExcessHet=3.0103;FS=1.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=1.69;SOR=0.896;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,87:165:99:2168,0,1992
chr1	212870103	rs2456815	C	G	2267.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=3.150;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:567,42,0
chr1	212900434	rs3835160	C	CG	860.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=17;ExcessHet=1.5490;FS=6.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=-8.300e-01;SOR=2.215;VQSLOD=5.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,7:17:99:232,0,348
chr1	212900487	rs2244935	A	G	3183.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=1.584;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:921,84,0
chr1	212911836	rs15702	T	C	4073.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DB;DP=106;ExcessHet=1.5490;FS=0.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=-7.880e-01;SOR=0.789;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1230,0,1287
chr1	212912108	rs67229635	ATT	A	369.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.697;SOR=0.544;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:87:125,0,87
chr1	212939848	rs10863992	A	G	164.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.87;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:212939848_A_G:90,6,0:212939848
chr1	212939860	rs11120019	G	A	164.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.87;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:212939848_A_G:90,6,0:212939848
chr1	212955231	rs11120025	A	C	244.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:59:110,0,59
chr1	212955454	rs11120026	G	A	1587.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=71;ExcessHet=3.9794;FS=2.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=0.299;SOR=0.968;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,34:71:99:854,0,878
chr1	212960866	rs3738800	C	T	4530.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=96;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=-5.390e-01;SOR=0.724;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1272,0,1219
chr1	212961143	rs3820679	T	C	413.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=-5.360e-01;SOR=1.371;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:98:271,0,98
chr1	212969842	rs11421046	C	CT	424.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=15;ExcessHet=3.9794;FS=1.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.31;ReadPosRankSum=0.490;SOR=0.509;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,5:15:86:86,0,217
chr1	212970215	rs6540766	T	A	297.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.77;ReadPosRankSum=0.00;SOR=0.525;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:113,0,25
chr1	212970375	rs1284800	A	G	4057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.17;SOR=2.474;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1590,129,0
chr1	212975778	rs4951639	C	T	189.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.57;ReadPosRankSum=-9.670e-01;SOR=2.303;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:78,0,33
chr1	212985332	rs11120033	T	C	536.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.56;POSITIVE_TRAIN_SITE;QD=30.12;SOR=2.985;VQSLOD=4.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr1	212985466	rs12130945	C	T	692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DB;DP=36;ExcessHet=3.9794;FS=6.082;MQ=59.62;MQRankSum=1.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-2.640e-01;SOR=1.609;VQSLOD=-1.805e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,16:36:99:402,0,526
chr1	212985739	rs186925180	G	C	270.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=1.45;SOR=1.270;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:279,0,126
chr1	213003428	rs12038225	T	G	660.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=0.490;SOR=1.358;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:95:222,0,95
chr1	213009178	rs369495200	CA	C	351.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=16;ExcessHet=6.9897;FS=2.918;MQ=60.00;MQRankSum=0.00;QD=5.59;ReadPosRankSum=0.252;SOR=0.337;VQSLOD=5.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:128,0,149
chr1	213009469	rs10864004	A	G	2805.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.943e+00;DB;DP=57;ExcessHet=1.5490;FS=3.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=0.256;SOR=0.378;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,30:57:99:721,0,706
chr1	213031158	rs1047881	C	T	2613.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388e+00;DB;DP=61;ExcessHet=1.5490;FS=1.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=-8.240e-01;SOR=0.890;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:532,0,980
chr1	213031350	rs2220949	C	T	6196.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.790e-01;DB;DP=240;ExcessHet=1.5490;FS=5.808;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.692;SOR=0.484;VQSLOD=7.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:168,70:240:99:1450,0,4407
chr1	213031448	rs2201601	G	C	3366.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=170;ExcessHet=3.9794;FS=3.416;MQ=59.98;MQRankSum=1.09;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=2.73;SOR=0.510;VQSLOD=1.54;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:115,55:170:99:0|1:213031448_G_C:1807,0,5215:213031448
chr1	213031473	rs2201602	A	C	5637.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=134;ExcessHet=1.5490;FS=2.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.783;SOR=0.528;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:88,46:134:99:0|1:213031448_G_C:1677,0,4551:213031448
chr1	213031709	rs2201603	C	T	1266.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.447e+00;DB;DP=24;ExcessHet=1.5490;FS=5.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=-1.673e+00;SOR=0.150;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:442,0,354
chr1	213031948	rs11120047	G	C	8488.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205e+00;DB;DP=172;ExcessHet=1.5490;FS=2.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=-1.910e-01;SOR=0.555;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,76:172:99:2128,0,2920
chr1	213032568	rs12023052	T	A	4661.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=103;ExcessHet=1.5490;FS=1.326;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=0.307;SOR=0.650;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,59:103:99:1472,0,1045
chr1	213032826	rs3768551	G	A	277.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=0.674;SOR=0.582;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:71,0,67
chr1	213036924	rs3086478	C	CAAAA	879.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.34;ReadPosRankSum=0.995;SOR=0.394;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,6:18:99:216,0,459
chr1	213037310	rs3768548	T	C	893.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.920e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=59.93;MQRankSum=0.812;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=0.864;SOR=2.985;VQSLOD=0.297;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:229,0,158
chr1	213046236	rs1890932	G	A	249.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=-5.240e-01;SOR=1.270;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:26:26,0,116
chr1	213056819	rs2644547	A	G	10591.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=32.00;SOR=0.801;VQSLOD=5.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2692,245,0
chr1	213056892	rs12125982	A	G	3691.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-01;DB;DP=50;ExcessHet=1.5490;FS=0.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-5.960e-01;SOR=0.907;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:840,0,609
chr1	213057078	rs11803450	A	G	285.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=2.19;SOR=1.445;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,144
chr1	213058852	rs7536716	T	A	717.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.63;ReadPosRankSum=0.345;SOR=1.445;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:213058852_T_A:158,0,221:213058852
chr1	213058871	rs7522693	C	G	680.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.94;ReadPosRankSum=0.00;SOR=3.383;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:213058852_T_A:120,0,157:213058852
chr1	213061362	rs2291772	T	A	4342.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=97;ExcessHet=1.5490;FS=0.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.50;ReadPosRankSum=1.07;SOR=0.770;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,46:97:99:1128,0,1210
chr1	213061460	rs2291771	T	C	2292.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=33;ExcessHet=1.5490;FS=1.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.96;ReadPosRankSum=0.433;SOR=1.046;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:501,0,412
chr1	213062017	rs112024320	T	TTTG	5613.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.90;SOR=5.720;VQSLOD=6.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1634,111,0
chr1	213062067	rs10864022	T	C	1395.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.46;ReadPosRankSum=0.711;SOR=1.358;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:465,0,310
chr1	213062158	rs10779595	T	C	454.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=-2.630e-01;SOR=0.776;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:205,0,178
chr1	213062813	rs41300993	A	G	315.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=11;ExcessHet=1.5490;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=0.880;SOR=2.517;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:211,0,139
chr1	213068066	rs7530561	A	C	239.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.22;SOR=3.912;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	213068096	rs12405293	T	C	384.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=-1.000e-03;SOR=0.892;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:102,0,138
chr1	213068192	rs2792558	T	C	4720.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=26.69;SOR=3.056;VQSLOD=4.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1467,132,0
chr1	213068233	rs12408694	C	T	4786.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.640e-01;DB;DP=54;ExcessHet=3.0103;FS=1.727;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.02;ReadPosRankSum=0.914;SOR=0.548;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1688,162,0
chr1	213068404	rs17019870	T	C	3044.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-01;DB;DP=59;ExcessHet=1.5490;FS=0.763;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=0.456;SOR=0.804;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,27:59:99:642,0,820
chr1	213068436	rs17019873	A	G	2293.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667e+00;DB;DP=41;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.40;ReadPosRankSum=-2.230e-01;SOR=0.654;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:450,0,689
chr1	213068542	rs146462077	C	CTGAT	2314.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096e+00;DB;DP=32;ExcessHet=1.5490;FS=5.951;MQ=60.00;MQRankSum=0.00;QD=33.07;ReadPosRankSum=-5.320e-01;SOR=1.564;VQSLOD=4.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:534,0,714
chr1	213068595	rs3207090	C	T	1528.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DB;DP=48;ExcessHet=3.9794;FS=1.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-8.890e-01;SOR=0.864;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,29:48:99:672,0,386
chr1	213124871	rs3123305	G	A	1182.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DB;DP=21;ExcessHet=1.5490;FS=7.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.74;SOR=0.059;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:301,0,272
chr1	213139748	rs3738805	T	G	4285.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.51;DB;DP=68;ExcessHet=3.9794;FS=2.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=0.963;SOR=0.883;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2136,204,0
chr1	213140362	rs10779597	G	A	1246.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;DB;DP=17;ExcessHet=3.9794;FS=9.474;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-3.260e-01;SOR=1.899;VQSLOD=18.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:581,51,0
chr1	213140398	rs10779598	A	C	1771.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.767;DB;DP=27;ExcessHet=3.9794;FS=2.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.092;SOR=1.022;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:833,81,0
chr1	213140669	rs6689669	C	T	464.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.87;POSITIVE_TRAIN_SITE;QD=33.56;SOR=4.977;VQSLOD=5.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr1	213146944	rs7511930	A	G	2653.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.650e-01;DB;DP=28;ExcessHet=3.0103;FS=7.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.36;ReadPosRankSum=-5.500e-02;SOR=2.419;VQSLOD=19.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1072,84,0
chr1	213173457	rs3738806	C	T	1567.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.61;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=0.239;SOR=0.507;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:691,51,0
chr1	213178080	rs4951660	C	T	189.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=3.611;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	213178207	.	CAA	C	160.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DP=8;ExcessHet=3.9794;FS=0.000;MQ=57.70;MQRankSum=0.366;QD=10.72;ReadPosRankSum=0.699;SOR=1.371;VQSLOD=0.037;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:82:92,0,82
chr1	213178340	rs11120076	G	A	5746.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.521;DB;DP=99;ExcessHet=3.9794;FS=1.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.361;SOR=0.804;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2970,296,0
chr1	213181381	rs3124666	G	T	396.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.08;QD=30.98;SOR=3.258;VQSLOD=3.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	213224719	rs4951476	T	C	7746.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=95;ExcessHet=3.0103;FS=1.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=-2.520e-01;SOR=0.823;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3109,285,0
chr1	213234933	rs35327007	G	GT	1814.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.226e+00;DB;DP=45;ExcessHet=6.9897;FS=1.321;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.050;SOR=0.549;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,39:45:23:866,0,23
chr1	213405414	rs11271079	GGCAACTGAGGAT	G	2803.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.900e-01;DB;DP=31;ExcessHet=3.0103;FS=3.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.23;ReadPosRankSum=1.03;SOR=0.329;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:94:1365,94,0
chr1	213416197	rs4411110	G	A	922.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=4.892;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
chr1	214454471	rs71515198	G	A	52.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.79;ReadPosRankSum=-4.310e-01;SOR=0.307;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:61:0|1:214454465_A_C:61,0,261:214454465
chr1	214478459	rs6540819	G	A	1464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394e+00;DB;DP=48;ExcessHet=3.9794;FS=8.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.624;SOR=1.394;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:536,0,687
chr1	214492106	rs34932055	C	A	162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.540e-01;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:214492106_C_A:171,0,198:214492106
chr1	214492286	rs1134647	G	A	5490.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=0.762;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2802,279,0
chr1	214498226	rs3767843	C	T	189.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.663e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.31;SOR=0.293;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:198,0,426
chr1	214501190	rs3754136	C	A	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=-1.092e+00;SOR=0.693;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:207,0,227
chr1	214503489	rs2291830	T	G	3590.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.030e-01;DB;DP=82;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-9.570e-01;SOR=0.706;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2255,245,0
chr1	214504604	rs2270704	T	C	5046.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=1.625;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2259,213,0
chr1	214505282	rs56403982	G	A	47.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=0.431;SOR=0.307;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:56:56,0,130
chr1	214505596	rs1874804	C	T	784.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=81;ExcessHet=3.0103;FS=1.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.524;SOR=1.018;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,33:81:99:793,0,1149
chr1	214505689	rs870118	G	C	730.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-5.500e-02;SOR=0.425;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,23:34:99:739,0,331
chr1	214505716	rs6419474	T	C	1971.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.61;SOR=3.215;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:837,63,0
chr1	214509830	rs11580360	G	A	97.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,102
chr1	214538109	.	A	AGTGTGT	208.72	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.88;QD=30.52;SOR=3.611;VQSLOD=5.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr1	214542668	rs3002311	T	C	970.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DB;DP=11;ExcessHet=3.9794;FS=2.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.944;SOR=0.257;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:204,0,164
chr1	214542819	rs1135352	T	C	4080.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=72;ExcessHet=3.9794;FS=1.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=1.11;SOR=0.547;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,39:72:99:1005,0,797
chr1	214543098	rs3738425	A	G	748.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=62;ExcessHet=3.0103;FS=1.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.298;SOR=0.896;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,27:62:99:757,0,870
chr1	214551276	rs3013451	G	A	1858.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.960e-01;DB;DP=17;ExcessHet=3.9794;FS=1.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.720;SOR=1.031;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:157,0,309
chr1	214558228	rs3013446	A	G	1057.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=13;ExcessHet=3.9794;FS=2.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.16;ReadPosRankSum=1.33;SOR=1.329;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:70:70,0,327
chr1	214560293	rs2270703	G	T	3662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.074e+00;DB;DP=81;ExcessHet=6.9897;FS=2.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.978;SOR=0.519;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,37:81:99:973,0,1171
chr1	214564340	rs7550799	T	C	9547.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DB;DP=125;ExcessHet=3.9794;FS=7.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=1.19;SOR=0.354;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,54:125:99:1393,0,1939
chr1	214564442	rs11120307	C	G	3119.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=45;ExcessHet=6.9897;FS=4.913;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=0.150;SOR=1.123;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,26:45:99:738,0,499
chr1	214566845	rs7355212	A	G	2526.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=4.244;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:686,57,0
chr1	214566952	rs4655342	A	G	5993.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DB;DP=84;ExcessHet=3.0103;FS=3.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=0.023;SOR=0.998;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,31:84:99:756,0,1418
chr1	214567013	rs11322819	CG	C	8769.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=112;ExcessHet=3.0103;FS=3.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=-1.219e+00;SOR=0.905;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:66,46:112:99:1097,0,1703
chr1	214568471	rs11120308	C	A	1901.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.58;ReadPosRankSum=-2.810e-01;SOR=2.056;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:175,0,238
chr1	214575449	rs7524206	T	C	369.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.03;SOR=4.615;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	214576482	rs4636427	C	T	988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=41;ExcessHet=3.9794;FS=1.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.826;SOR=1.012;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:447,0,704
chr1	214576513	rs6657749	C	T	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.897e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.570;SOR=0.223;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:184,0,513
chr1	214637882	rs7528315	A	G	3961.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.13;ReadPosRankSum=0.166;SOR=3.631;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:556,0,537
chr1	214638172	rs10864100	C	T	14355.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=199;ExcessHet=3.0103;FS=0.711;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=0.458;SOR=0.824;VQSLOD=6.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,96:199:99:2367,0,2499
chr1	214638319	rs10864101	T	C	1862.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.05;ReadPosRankSum=1.74;SOR=2.483;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:225,0,200
chr1	214638347	rs10864102	A	G	931.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.57;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.51;ReadPosRankSum=-1.890e-01;SOR=3.690;VQSLOD=4.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:98:98,0,101
chr1	214826196	rs335524	G	A	9066.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=99;ExcessHet=3.0103;FS=3.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-8.550e-01;SOR=0.471;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3076,296,0
chr1	214826364	rs335523	G	A	5059.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.310;DB;DP=62;ExcessHet=3.0103;FS=0.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=1.12;SOR=0.849;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1999,185,0
chr1	214826810	rs11303309	CT	C	5437.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.147e+00;DB;DP=79;ExcessHet=3.0103;FS=3.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=-5.480e-01;SOR=1.041;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,72:79:99:1828,161,0
chr1	214826988	rs335522	A	C	1155.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=6.666;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:479,33,0
chr1	214828812	rs435043	A	G	3293.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;DB;DP=39;ExcessHet=3.0103;FS=2.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=0.647;SOR=0.471;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1206,117,0
chr1	214828967	rs448989	A	G	471.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.09;SOR=2.670;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr1	214829010	rs387535	G	A	333.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=2.093;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr1	214830165	rs11307420	TA	T	123.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.61;SOR=3.611;VQSLOD=4.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr1	214830617	rs438034	A	G	5874.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.780e-01;DB;DP=72;ExcessHet=3.0103;FS=0.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=0.985;SOR=0.795;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2261,216,0
chr1	214830908	rs417844	A	G	217.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.11;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr1	214837110	rs7289	C	G	7323.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=72;ExcessHet=3.0103;FS=1.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=-3.210e-01;SOR=1.068;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2594,216,0
chr1	215239896	rs1545505	T	C	893.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.08;SOR=6.184;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr1	215256888	rs61818297	G	A	935.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=4.977;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
chr1	215368514	rs1556907	A	G	1604.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.760e-01;DB;DP=15;ExcessHet=3.9794;FS=1.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=1.20;SOR=1.194;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:569,45,0
chr1	215408057	rs11120527	G	T	748.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.000e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=59.94;MQRankSum=1.13;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=0.00;SOR=0.425;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
chr1	215741053	rs2275768	T	G	886.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.880e-01;DB;DP=40;ExcessHet=3.9794;FS=2.800;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-1.782e+00;SOR=0.419;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:325,0,583
chr1	215753355	rs11803705	T	G	2194.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;DB;DP=64;ExcessHet=3.9794;FS=1.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.581;SOR=0.529;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:840,0,919
chr1	215781344	rs200976075	C	T	785.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.280e-01;DB;DP=45;ExcessHet=3.0103;FS=1.412;MQ=60.00;MQRankSum=0.00;QD=17.45;ReadPosRankSum=1.63;SOR=1.194;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,28:45:99:794,0,433
chr1	215781574	rs3767255	A	G	1342.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=43;ExcessHet=3.9794;FS=6.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.592;SOR=1.609;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:477,0,651
chr1	215793834	rs14137	G	A	3312.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=77;ExcessHet=1.5490;FS=2.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=0.127;SOR=0.491;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,38:77:99:929,0,910
chr1	215814186	.	CAA	C,CA	640.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.440e-01;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.72;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=0.212;SOR=1.061;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,6:11:65:219,99,117,74,0,65
chr1	215848587	rs2797234	T	C	4176.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385e+00;DB;DP=92;ExcessHet=6.9897;FS=6.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.39;SOR=1.004;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1142,0,1355
chr1	215848641	rs2797235	T	C	8982.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.400e+00;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.02;ReadPosRankSum=1.50;SOR=0.251;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,82:83:99:2593,207,0
chr1	215853748	rs5780842	GT	G	3695.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.260e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=1.18;SOR=0.703;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1113,120,0
chr1	215931928	rs12095085	T	A	853.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.760e-01;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-3.810e-01;SOR=0.746;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:862,0,614
chr1	215956304	rs7518466	A	G	1819.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DB;DP=33;ExcessHet=3.9794;FS=8.967;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.764;SOR=1.735;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,11:33:99:293,0,583
chr1	215960167	rs10864198	T	G	6400.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.31;DB;DP=74;ExcessHet=3.9794;FS=7.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=1.28;SOR=1.187;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,47:74:99:1283,0,696
chr1	215963374	rs11120629	G	A	191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=1.58;SOR=1.230;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:200,0,239
chr1	215972003	rs11120635	T	G	797.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:110,0,66
chr1	216052066	rs55713064	G	T	500.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.360e+00;DB;DP=25;ExcessHet=3.0103;FS=2.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.708;SOR=1.508;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:509,0,302
chr1	216062306	rs56385601	A	G	988.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=81;ExcessHet=3.0103;FS=4.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-1.082e+00;SOR=1.014;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,41:81:99:997,0,847
chr1	216062505	rs75163086	TG	T	127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=17;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;QD=7.49;ReadPosRankSum=-1.060e-01;SOR=1.911;VQSLOD=5.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,5:17:99:136,0,397
chr1	216107915	rs41277206	G	A	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141e+00;DB;DP=34;ExcessHet=3.0103;FS=1.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=-1.933e+00;SOR=0.407;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:567,0,365
chr1	216138953	rs12069955	C	T	70.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=-1.150e+00;SOR=0.446;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:79,0,32
chr1	216172380	rs10864219	A	G	4624.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.347e+00;DB;DP=61;ExcessHet=3.0103;FS=0.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=0.402;SOR=0.587;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1940,183,0
chr1	216221721	rs10864227	C	T	1801.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=31;ExcessHet=1.5490;FS=1.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=-1.012e+00;SOR=1.090;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:216221716_G_A:1160,93,0:216221716
chr1	216246675	rs35944387	AG	A	2160.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.990e-01;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=0.614;SOR=0.663;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,19:32:99:570,0,366
chr1	216258194	rs56110889	G	T	1025.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040e-01;DB;DP=27;ExcessHet=3.9794;FS=0.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.574;SOR=0.839;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:510,0,289
chr1	216348764	rs1805049	C	T	2364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=64;ExcessHet=6.9897;FS=0.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-3.370e-01;SOR=0.766;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:886,0,782
chr1	216370108	rs447102	C	T	1188.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=0.149;SOR=0.596;VQSLOD=6.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,17:46:99:0|1:216370108_C_T:455,0,880:216370108
chr1	216370130	rs386851	T	G	3829.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.72;POSITIVE_TRAIN_SITE;QD=26.78;SOR=5.376;VQSLOD=5.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:96:1|1:216370108_C_T:1325,96,0:216370108
chr1	216371934	rs646094	A	C	1350.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=17;ExcessHet=6.9897;FS=5.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=-5.870e-01;SOR=0.153;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:250,0,358
chr1	216390475	rs419767	C	T	76.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=2.303;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	216390694	rs1324330	C	T	2497.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e-02;DB;DP=62;ExcessHet=6.9897;FS=3.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-3.920e-01;SOR=1.036;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,20:62:99:548,0,1085
chr1	216592003	rs4253963	T	C	2856.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.021e+00;DB;DP=62;ExcessHet=1.5490;FS=2.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=-1.435e+00;SOR=0.946;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1865,186,0
chr1	216595306	rs10779261	C	T	2468.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.629e+00;DB;DP=53;ExcessHet=3.9794;FS=1.226;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.763;SOR=0.839;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1519,157,0
chr1	216679858	rs144848582	A	AT	211.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.39;SOR=4.407;VQSLOD=5.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:228,24,0
chr1	216692669	rs945453	C	T	4716.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.815;DB;DP=98;ExcessHet=1.5490;FS=1.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=-1.217e+00;SOR=0.561;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3061,293,0
chr1	216737861	rs11117622	G	T	489.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-9.440e-01;SOR=0.382;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:498,0,705
chr1	216737932	rs150591677	C	CT	90.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.524;SOR=1.981;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:14:99,0,14
chr1	216741314	rs11572766	C	T	1119.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.780e-01;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=1.22;SOR=0.777;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1128,0,1174
chr1	216824505	rs10863261	C	G	1044.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=2.694;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1061,93,0
chr1	216851005	rs11117657	T	C	210.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.99;SOR=3.912;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:227,18,0
chr1	216896444	rs2813709	A	G	1051.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.38;ReadPosRankSum=0.282;SOR=2.303;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:270,24,0
chr1	217604654	rs35737297	T	C	1362.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.280e-01;DB;DP=105;ExcessHet=3.0103;FS=1.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=3.06;SOR=0.527;VQSLOD=21.87;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:53,52:105:99:1371,0,1490
chr1	217665204	rs34921892	CT	C	32.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.39;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:41:41,0,52
chr1	217671771	rs724803	C	G	2230.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e-01;DB;DP=83;ExcessHet=3.9794;FS=1.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-6.100e-01;SOR=0.587;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,39:83:99:925,0,1068
chr1	217688408	rs17046538	C	T	393.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.24;ReadPosRankSum=0.431;SOR=1.473;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:72:128,0,72
chr1	217784092	rs17723306	A	G	104.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:112,0,61
chr1	217787730	rs17666909	T	G	63.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:72,0,34
chr1	217793938	rs111668135	T	TTAA	203.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349e+00;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=-3.490e-01;SOR=0.120;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:212,0,285
chr1	217804325	rs944730	G	A	8788.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=362;ExcessHet=3.9794;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.482;SOR=0.756;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:161,201:362:99:4809,0,3711
chr1	217842129	rs6692477	A	G	690.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771e+00;DB;DP=65;ExcessHet=3.0103;FS=0.950;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-4.200e-01;SOR=0.895;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,32:65:99:699,0,830
chr1	217842575	rs115200514	C	A	538.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=39;ExcessHet=3.0103;FS=1.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.606;SOR=0.936;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:547,0,550
chr1	217856803	rs12073566	T	C	608.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DB;DP=46;ExcessHet=3.0103;FS=4.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.51;SOR=1.619;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:617,0,591
chr1	217947738	rs6604561	G	A	1751.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.860e-01;DB;DP=39;ExcessHet=6.9897;FS=8.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-2.490e-01;SOR=1.359;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,14:39:99:304,0,665
chr1	218475533	rs2251169	C	T	830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634e+00;DB;DP=17;ExcessHet=6.9897;FS=1.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.422;SOR=0.995;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:249,0,217
chr1	218609702	rs6684205	A	G	485.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.39;ReadPosRankSum=-4.840e-01;SOR=2.448;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:97:147,0,97
chr1	218610662	rs11285412	CT	C	1582.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.071e+00;DB;DP=40;ExcessHet=6.9897;FS=7.828;MQ=60.00;MQRankSum=0.00;QD=14.13;ReadPosRankSum=1.08;SOR=0.258;VQSLOD=4.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,19:40:99:436,0,148
chr1	218683417	.	C	CT	1903.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DP=43;ExcessHet=3.9794;FS=1.839;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=1.71;SOR=0.791;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,22:43:99:436,0,355
chr1	218683528	rs7532546	A	G	1207.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=31;ExcessHet=3.9794;FS=2.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-4.570e-01;SOR=1.085;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,14:31:99:0|1:218683528_A_G:471,0,848:218683528
chr1	218683536	rs7532551	A	G	1082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=29;ExcessHet=3.9794;FS=3.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=-7.020e-01;SOR=1.292;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,13:29:99:0|1:218683528_A_G:464,0,850:218683528
chr1	218683666	rs150581539	T	TTCTC	349.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=0.366;SOR=1.981;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:99:111,0,112
chr1	218683684	rs72738855	C	T	222.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.72;ReadPosRankSum=1.38;SOR=1.402;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,1:3:34:34,0,79
chr1	218696903	rs41313742	C	T	1324.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;DB;DP=52;ExcessHet=3.9794;FS=1.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.308;SOR=0.520;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,29:52:99:759,0,529
chr1	218698728	rs72738863	G	A	1470.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.859;SOR=0.780;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:726,0,834
chr1	219366400	rs35359058	T	TG	2631.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=-1.390e-01;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=-1.790e-01;SOR=1.457;VQSLOD=4.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,26:28:47:665,47,0
chr1	219383848	rs3087015	A	ACTTTTT	6464.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.40;SOR=2.426;VQSLOD=5.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1718,120,0
chr1	219383867	rs940571	T	C	6405.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.531;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1802,174,0
chr1	219383905	rs940570	A	G	7522.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=0.966;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2125,226,0
chr1	219706327	rs2785986	A	G	3136.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502e+00;DB;DP=42;ExcessHet=6.9897;FS=0.660;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.331;SOR=0.627;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,29:42:99:776,0,325
chr1	219706428	rs10746385	T	C	4078.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.538e+00;DB;DP=161;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=1.15;SOR=0.714;VQSLOD=6.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,76:161:99:1688,0,2141
chr1	220089352	rs2231734	A	C	172.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.050e-01;DB;DP=16;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.217;SOR=1.863;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:181,0,307
chr1	220100497	.	CA	C	180.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370e-01;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.20;ReadPosRankSum=0.146;SOR=0.392;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,8:24:99:189,0,334
chr1	220100980	.	TAAAAAA	T	1364.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.26;MQRankSum=0.00;QD=34.67;ReadPosRankSum=0.489;SOR=2.584;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,10:15:45:484,0,45
chr1	220101002	.	A	C	555.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.290e-01;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.44;ReadPosRankSum=3.62;SOR=0.569;VQSLOD=20.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,14:21:99:0|1:220101002_A_C:564,0,294:220101002
chr1	220101005	rs76160931	A	C	549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.97;ReadPosRankSum=3.79;SOR=0.473;VQSLOD=19.96;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,14:22:99:0|1:220101002_A_C:558,0,378:220101002
chr1	220101008	rs79951865	A	C	2271.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.260e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=27.31;ReadPosRankSum=4.07;SOR=0.846;VQSLOD=-1.003e-01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,14:24:99:0|1:220101002_A_C:588,0,459:220101002
chr1	220101022	.	A	AC	661.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.570e-01;DP=39;ExcessHet=3.0103;FS=3.099;MQ=60.00;MQRankSum=0.00;QD=16.96;ReadPosRankSum=-2.114e+00;SOR=2.211;VQSLOD=4.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,18:39:99:1|0:220101002_A_C:670,0,828:220101002
chr1	220101024	.	A	AC	661.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148e+00;DP=39;ExcessHet=3.0103;FS=3.099;MQ=60.00;MQRankSum=0.00;QD=16.96;ReadPosRankSum=-2.100e+00;SOR=2.211;VQSLOD=4.44;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,18:39:99:1|0:220101002_A_C:670,0,828:220101002
chr1	220101029	.	A	AC	3322.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DP=41;ExcessHet=3.9794;FS=0.000;MQ=59.73;MQRankSum=0.00;QD=29.94;ReadPosRankSum=1.74;SOR=0.519;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,22:41:99:0|1:220101002_A_C:813,0,722:220101002
chr1	220142023	rs1061248	C	T	141.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=-3.660e-01;SOR=0.527;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:38:150,0,38
chr1	220142070	rs1061242	C	T	275.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040e-01;DB;DP=22;ExcessHet=3.0103;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.657;SOR=0.155;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:284,0,305
chr1	220145272	rs1982987	C	T	62.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.86;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:16:71,0,16
chr1	220145371	rs2795315	T	G	2254.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.71;SOR=2.231;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:639,54,0
chr1	220145584	rs1982986	C	T	163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.77;ReadPosRankSum=0.326;SOR=0.693;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:172,0,417
chr1	220145637	rs1982985	A	G	1003.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=10;ExcessHet=3.9794;FS=4.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=0.057;SOR=1.863;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:137,0,141
chr1	220145655	rs1982984	C	T	131.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-9.360e-01;SOR=0.941;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:140,0,101
chr1	220146873	.	GAA	G	696.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.82;ReadPosRankSum=1.28;SOR=4.615;VQSLOD=3.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:5:138,0,5
chr1	220151808	rs3215088	C	CAA	57.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=-1.242e+00;SOR=0.169;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,279
chr1	220152251	rs2647438	C	T	266.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=4.174;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	220153332	rs34917248	T	TAA	5858.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.81;SOR=2.694;VQSLOD=5.77;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,30:30:93:1386,93,0
chr1	220154246	rs35193743	AT	A	1234.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.629e+00;DB;DP=11;ExcessHet=3.0103;FS=5.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=-4.350e-01;SOR=2.015;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:306,33,0
chr1	220154602	rs1694599	T	C	1706.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=6.138;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr1	220154659	rs10595099	TAAA	T	3940.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=27.51;SOR=2.954;VQSLOD=5.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1190,84,0
chr1	220154768	rs1061160	C	T	7020.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603e+00;DB;DP=108;ExcessHet=3.0103;FS=6.852;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.546;SOR=0.603;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,61:108:99:1358,0,1067
chr1	220155920	rs2133194	G	A	136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-1.465e+00;SOR=0.330;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:145,0,106
chr1	220156090	rs2647462	T	C	7814.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=0.718;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2162,218,0
chr1	220156427	rs1391566	T	C	190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DB;DP=16;ExcessHet=3.0103;FS=9.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=1.41;SOR=0.023;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:199,0,356
chr1	220160360	rs2647435	A	G	2983.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=5.186;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:568,48,0
chr1	220160433	rs2647434	A	G	8027.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.45;SOR=2.282;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2229,204,0
chr1	220161751	rs2795310	A	G	1231.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.99;SOR=4.548;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:301,21,0
chr1	220162195	rs2254494	T	C	2531.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.45;SOR=4.139;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:524,36,0
chr1	220174732	rs1694575	C	T	983.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.49;ReadPosRankSum=-4.640e-01;SOR=4.407;VQSLOD=14.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:220174732_C_T:404,30,0:220174732
chr1	220174740	rs4379680	C	T	90.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.30;ReadPosRankSum=-1.350e-01;SOR=0.368;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:220174732_C_T:99,0,188:220174732
chr1	220178717	rs5781162	T	TA	5194.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=1.135;VQSLOD=6.20;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1444,129,0
chr1	220179322	rs2647420	A	T	2349.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=5.247;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:636,45,0
chr1	220184150	rs34170326	CA	C	1878.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.32;ReadPosRankSum=1.51;SOR=0.836;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:701,48,0
chr1	220184164	rs11118484	A	G	3415.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=5.994;VQSLOD=7.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:57:797,57,0
chr1	220191932	rs35962858	G	GA	1005.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153e+00;DB;DP=14;ExcessHet=3.0103;FS=7.696;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-4.970e-01;SOR=2.387;VQSLOD=5.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,7:14:99:117,0,140
chr1	220192171	rs34224725	T	TAAA	873.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.60;POSITIVE_TRAIN_SITE;QD=34.07;SOR=4.804;VQSLOD=6.42;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	220192192	.	TA	T	765.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DP=8;ExcessHet=3.0103;FS=8.352;MQ=59.78;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=0.106;SOR=5.031;VQSLOD=1.01;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:182,24,0
chr1	220192495	rs2245457	C	G	4776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.39;SOR=3.793;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1122,93,0
chr1	220197545	rs2577159	C	T	2961.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.39;SOR=4.174;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:981,84,0
chr1	220197625	rs2230301	G	T	8537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=1.609;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2515,245,0
chr1	220198770	rs11340220	GA	G	395.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.69;SOR=4.174;VQSLOD=5.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:121,15,0
chr1	220203596	rs2270711	T	C	312.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=9;ExcessHet=1.5490;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=0.241;SOR=2.494;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:92:92,0,188
chr1	220205583	rs57738676	ATT	A	619.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.62;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=-8.870e-01;SOR=4.712;VQSLOD=2.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:251,21,0
chr1	220205943	rs2789816	G	A	2243.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=3.477;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:800,72,0
chr1	220205980	rs2577138	A	C	1517.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.65;SOR=4.977;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:495,39,0
chr1	220206690	rs2577137	G	C	638.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.92;ReadPosRankSum=0.204;SOR=2.531;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	220207017	rs2647456	C	T	4827.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=1.708;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1131,110,0
chr1	220208154	rs2789817	C	A	6195.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.40;SOR=4.148;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1374,108,0
chr1	220208492	rs2647454	T	C	1329.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.25;SOR=3.981;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:388,27,0
chr1	220231180	rs34887640	CT	C	674.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=-1.261e+00;SOR=0.627;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,20:34:99:683,0,463
chr1	220232797	rs904328	C	T	356.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=3.056;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	220239448	rs1146773	T	C	3172.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.795;DB;DP=70;ExcessHet=1.5490;FS=1.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=1.00;SOR=0.512;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2133,209,0
chr1	220239640	rs1146774	A	G	484.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=5.283;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:343,27,0
chr1	220240862	rs17563262	A	G	569.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=-2.751e+00;SOR=1.022;VQSLOD=22.67;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:10,20:30:99:578,0,222
chr1	220243002	rs1612813	A	G	506.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=1.911;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr1	220275378	rs2789788	G	A	877.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.499e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=-3.940e-01;SOR=0.818;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:208,0,261
chr1	220291773	rs115660502	A	G	61.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,70
chr1	220308109	rs369443682	TG	T	63.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.04;ReadPosRankSum=1.01;SOR=0.446;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:71:71,0,119
chr1	220313715	rs141385141	A	G	122.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.204e+00;DB;DP=15;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=0.245;SOR=0.050;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:131,0,385
chr1	220314945	rs10442693	G	A	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=-1.368e+00;SOR=0.941;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:93:141,0,93
chr1	220321023	rs11095	A	G	496.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.610e-01;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-1.007e+00;SOR=0.764;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:505,0,762
chr1	220331319	rs3767654	T	G	323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978e+00;DB;DP=35;ExcessHet=3.0103;FS=3.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=1.01;SOR=0.297;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,14:35:99:332,0,637
chr1	220332552	rs2789792	C	T	1052.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DB;DP=20;ExcessHet=6.9897;FS=1.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-1.442e+00;SOR=0.476;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:162,0,398
chr1	220335430	rs2164790	A	G	55.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375e+00;DB;DP=13;ExcessHet=3.0103;FS=5.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.25;ReadPosRankSum=0.741;SOR=0.039;VQSLOD=22.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:64:64,0,321
chr1	220362857	rs58019188	AT	A	836.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=23.24;SOR=5.784;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:219,27,0
chr1	220369745	rs35396665	TA	T	439.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DB;DP=44;ExcessHet=3.0103;FS=1.085;MQ=59.90;MQRankSum=0.357;QD=9.98;ReadPosRankSum=0.905;SOR=0.826;VQSLOD=0.591;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,21:44:99:448,0,484
chr1	220375728	rs76473498	A	G	908.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DB;DP=53;ExcessHet=3.0103;FS=2.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=-3.250e-01;SOR=0.418;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,31:53:99:917,0,622
chr1	220406291	rs10863538	A	G	626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DB;DP=26;ExcessHet=6.9897;FS=1.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.94;ReadPosRankSum=-8.610e-01;SOR=0.920;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,7:26:99:143,0,538
chr1	220603310	rs10553491	TGTGA	T	3248	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=39;ExcessHet=3.0103;FS=4.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.53;ReadPosRankSum=2.11;SOR=2.970;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:39:99:1226,115,0
chr1	220603324	rs12402904	A	G	1953.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.170e-01;DB;DP=46;ExcessHet=1.5490;FS=12.160;MQ=60.00;MQRankSum=0.00;QD=24.42;ReadPosRankSum=1.98;SOR=2.376;VQSLOD=12.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:713,0,599
chr1	220603516	rs34808456	G	A	629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.160e-01;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=1.84;SOR=0.746;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:638,0,701
chr1	220607685	rs1361256	G	A	7754.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=1.112;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2184,203,0
chr1	220607891	rs1338767	A	G	5293.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=1.042;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1577,132,0
chr1	220608142	rs12032166	C	T	1627.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730e-01;DB;DP=27;ExcessHet=1.5490;FS=3.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=0.171;SOR=1.449;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:373,0,425
chr1	220789236	rs2786599	C	T	7699.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=0.732;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1982,207,0
chr1	220789355	rs369680057	AT	A	3030.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=0.062;SOR=0.755;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,13:22:99:386,0,148
chr1	220789362	rs12137627	T	A	2838.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.213;DB;DP=22;ExcessHet=3.0103;FS=2.464;MQ=59.87;MQRankSum=0.00;QD=25.35;ReadPosRankSum=2.20;SOR=0.375;VQSLOD=4.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,21:22:38:522,38,0
chr1	220808666	rs372845559	CT	C	684.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DB;DP=22;ExcessHet=3.9794;FS=3.672;MQ=59.34;MQRankSum=0.00;QD=12.44;ReadPosRankSum=0.181;SOR=1.532;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:22:99:166,0,123
chr1	220808921	rs10746403	T	C	1561.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=61;ExcessHet=3.9794;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-4.260e-01;SOR=1.054;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:809,0,757
chr1	220824115	rs12123306	G	C	1027.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.980e-01;DB;DP=77;ExcessHet=3.0103;FS=6.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=1.40;SOR=0.283;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1036,0,826
chr1	220825523	rs3737296	A	G	2380.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452e+00;DB;DP=81;ExcessHet=3.9794;FS=1.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=1.22;SOR=0.527;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,49:81:99:1232,0,787
chr1	220921945	rs337188	G	C	1921.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.070e-01;DB;DP=17;ExcessHet=3.0103;FS=9.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.57;ReadPosRankSum=-3.280e-01;SOR=2.272;VQSLOD=17.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:241,0,289
chr1	220927771	rs41314538	C	T	3041.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e-01;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=0.148;SOR=0.678;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:520,0,681
chr1	220934802	rs3753879	A	C	205.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=6;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-4.640e-01;SOR=0.141;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:73:73,0,101
chr1	220935081	rs2275575	G	A	3228.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.159;DB;DP=86;ExcessHet=6.9897;FS=1.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.418e+00;SOR=0.581;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,49:86:99:1231,0,918
chr1	220970028	rs2642438	A	G	8568.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.077;DB;DP=113;ExcessHet=3.0103;FS=0.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.98;ReadPosRankSum=1.15;SOR=0.645;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3670,339,0
chr1	220986516	rs12144830	C	T	4215.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=3.202;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1330,108,0
chr1	220986546	rs17650107	G	A	3381.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.67;DB;DP=52;ExcessHet=3.9794;FS=4.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.330;SOR=1.075;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1738,156,0
chr1	221053545	rs12141189	T	C	13746.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DB;DP=317;ExcessHet=1.5490;FS=1.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=0.913;SOR=0.609;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,317:317:99:9926,951,0
chr1	221054761	rs17597773	C	G	3367.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.302e+00;DB;DP=67;ExcessHet=1.5490;FS=2.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=-1.520e-01;SOR=0.457;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2336,201,0
chr1	221507141	rs7555947	C	T	3648.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=1.981;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1135,102,0
chr1	221509161	rs6685717	G	C	618.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.719e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.96;ReadPosRankSum=-1.692e+00;SOR=0.428;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:411,36,0
chr1	221912361	rs1141714	T	C	2448.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=57;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=0.579;SOR=0.652;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,21:57:99:568,0,965
chr1	221912808	rs1136448	T	C	1798.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=130;ExcessHet=3.0103;FS=0.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.305;SOR=0.814;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,67:130:99:1807,0,1711
chr1	222646811	rs371137431	G	A	340.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.850e-01;DB;DP=20;ExcessHet=3.0103;FS=1.922;MQ=53.28;MQRankSum=0.376;NEGATIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-8.250e-01;SOR=0.307;VQSLOD=-2.645e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:349,0,130
chr1	222646973	.	G	A	874.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-02;DP=15;ExcessHet=3.9794;FS=1.227;MQ=52.22;MQRankSum=-6.150e-01;NEGATIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=0.491;SOR=0.922;VQSLOD=-2.697e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,5:15:99:0|1:222646973_G_A:123,0,277:222646973
chr1	222646986	.	A	G	1518.69	PASS	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MQ=50.27;NEGATIVE_TRAIN_SITE;QD=30.41;SOR=0.793;VQSLOD=-1.480e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:222646973_G_A:497,42,0:222646973
chr1	222649341	rs34431997	A	C	669	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=53.58;QD=31.42;SOR=1.739;VQSLOD=1.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr1	222649491	rs71642766	C	G	126.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=28;ExcessHet=3.0103;FS=1.792;MQ=49.59;MQRankSum=-3.070e-01;NEGATIVE_TRAIN_SITE;QD=4.51;ReadPosRankSum=-2.700e-02;SOR=1.473;VQSLOD=-2.865e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,7:28:99:135,0,490
chr1	222649560	.	A	G	52.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838e+00;DP=29;ExcessHet=3.0103;FS=0.000;MQ=40.67;MQRankSum=-1.533e+00;QD=1.80;ReadPosRankSum=0.054;SOR=0.481;VQSLOD=-5.182e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,6:29:61:61,0,771
chr1	222650534	rs71642767	T	C	652.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795e+00;DB;DP=40;ExcessHet=3.0103;FS=1.364;MQ=57.75;MQRankSum=-2.424e+00;QD=16.31;ReadPosRankSum=0.355;SOR=0.401;VQSLOD=-1.376e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,26:40:99:661,0,355
chr1	222705111	rs4846372	G	A	861.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.99;SOR=3.912;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr1	222705270	rs4846373	T	C	3138.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=49;ExcessHet=3.9794;FS=4.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=1.72;SOR=1.067;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:665,0,556
chr1	222705546	rs17163175	G	A	935.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.740e-01;DB;DP=13;ExcessHet=1.5490;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.19;ReadPosRankSum=-1.410e-01;SOR=1.911;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:253,0,138
chr1	222713501	rs3748663	C	A	1065.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=97;ExcessHet=3.0103;FS=3.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-7.300e-01;SOR=0.839;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,43:97:99:1074,0,1195
chr1	222713621	rs3748665	C	T	879.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.598e+00;DB;DP=65;ExcessHet=3.0103;FS=2.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-3.820e-01;SOR=0.420;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,35:65:99:888,0,856
chr1	222713750	rs3828079	G	A	2631.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=39;ExcessHet=3.9794;FS=8.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.310;SOR=1.402;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,12:39:99:302,0,748
chr1	222715247	rs11487812	A	G	1146.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.67;ReadPosRankSum=-5.240e-01;SOR=1.051;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:99,0,64
chr1	222721288	rs4846382	C	T	6268.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380e+00;DB;DP=60;ExcessHet=3.9794;FS=0.551;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.84;ReadPosRankSum=1.09;SOR=0.622;VQSLOD=6.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,36:60:99:1069,0,716
chr1	222734803	rs1134898	G	C	659.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.475e+00;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=0.071;SOR=0.646;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,14:40:99:258,0,702
chr1	222737265	rs35877231	G	T	2073.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.78;POSITIVE_TRAIN_SITE;QD=28.01;SOR=2.342;VQSLOD=2.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:684,60,0
chr1	222737568	rs3008640	C	T	3511.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=3.865;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:961,81,0
chr1	222742434	rs3008642	A	C	274.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.45;SOR=4.174;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr1	222742676	rs4846766	T	C	4832.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=55;ExcessHet=3.0103;FS=2.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=-9.060e-01;SOR=0.518;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1763,165,0
chr1	222751034	rs2936033	T	C	3673.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=2.280;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1787,158,0
chr1	222761649	rs4525045	C	A	3315.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.595e+00;DB;DP=36;ExcessHet=3.0103;FS=3.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.28;ReadPosRankSum=-5.170e-01;SOR=2.558;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1344,108,0
chr1	222761771	rs2270705	A	G	2121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=179;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-3.680e-01;SOR=0.674;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,89:179:99:2130,0,2047
chr1	222798106	rs3008617	G	A	9810.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=0.831;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3007,321,0
chr1	222802006	rs2936053	A	G	6264.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=0.892;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2176,203,0
chr1	222802803	rs3748626	T	G	2226.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.420e-01;DB;DP=45;ExcessHet=1.5490;FS=1.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=-1.060e-01;SOR=0.485;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1511,135,0
chr1	222802926	rs3008620	C	T	4876.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=57;ExcessHet=3.0103;FS=2.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=0.875;SOR=0.457;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1735,171,0
chr1	222805706	rs78391833	T	G	587.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=38;ExcessHet=3.0103;FS=1.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=1.06;SOR=0.454;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:596,0,448
chr1	222806218	rs17163345	A	G	159.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=3.258;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr1	222819221	rs1909197	G	A	379.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.33;SOR=4.804;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	222821211	rs61824282	C	T	939.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.46;SOR=0.880;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:956,99,0
chr1	222823529	rs17465637	A	C	2088.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=54;ExcessHet=1.5490;FS=4.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=1.51;SOR=0.318;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1703,162,0
chr1	222823743	rs67180937	T	G	1528.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.321e+00;DB;DP=28;ExcessHet=1.5490;FS=8.120;MQ=60.00;MQRankSum=0.00;QD=19.86;ReadPosRankSum=0.601;SOR=0.150;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:949,84,0
chr1	222825088	rs17011681	C	G	318.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=7;ExcessHet=1.5490;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:270,21,0
chr1	222825403	rs3002150	G	A	4970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.36;SOR=1.674;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1371,129,0
chr1	222825717	rs10495198	T	C	2255.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.904;DB;DP=45;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=-7.280e-01;SOR=0.622;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1504,134,0
chr1	222825761	rs2936019	G	A	3189.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=34.67;SOR=2.154;VQSLOD=5.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1043,93,0
chr1	222826481	rs2291832	G	A	3273.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.155;DB;DP=77;ExcessHet=1.5490;FS=4.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=-8.210e-01;SOR=0.806;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2298,230,0
chr1	222826847	rs2291833	A	T	584.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=0.592;SOR=0.760;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
chr1	222832295	rs2291834	T	C	979.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=14;ExcessHet=1.5490;FS=2.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=0.299;SOR=0.223;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:522,42,0
chr1	222833601	rs3002153	T	C	8639.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=0.826;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2486,237,0
chr1	222836996	rs17465940	A	G	237.38	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.91;ReadPosRankSum=1.15;SOR=2.584;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr1	222837594	rs2270707	G	A	2505.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.72;SOR=4.112;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1243,101,0
chr1	222837939	rs17465982	G	A	184.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=3.611;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr1	222838216	rs2936026	C	T	8579.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.446;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2562,251,0
chr1	222838539	.	CA	C	233.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.36;MQRankSum=0.00;QD=19.49;ReadPosRankSum=0.792;SOR=0.836;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:22:35,0,22
chr1	222839107	.	G	A	164.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.43;ReadPosRankSum=-1.000e-01;SOR=0.693;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:173,0,171
chr1	222846882	rs12138316	G	A	354.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.515e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=-1.803e+00;SOR=0.368;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:279,21,0
chr1	222860734	rs3008638	C	T	857.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.06;SOR=4.003;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	222886119	rs3811465	A	G	24542.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=418;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=1.140;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,418:418:99:12940,1254,0
chr1	222892654	rs146216028	T	C	470.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063e+00;DB;DP=60;ExcessHet=3.0103;FS=1.003;MQ=60.00;MQRankSum=0.00;QD=7.84;ReadPosRankSum=-1.140e+00;SOR=0.632;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,25:60:99:479,0,895
chr1	222919748	rs2378606	G	A	298.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=2.29;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr1	222919895	rs2378607	T	G	2803.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.45;DB;DP=41;ExcessHet=3.9794;FS=8.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=0.301;SOR=1.548;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1531,123,0
chr1	222923001	rs2068814	A	G	3340.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.577;SOR=0.702;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1761,165,0
chr1	222923351	rs6683071	A	G	2483.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.261e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.59;ReadPosRankSum=-2.209e+00;SOR=0.779;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:866,75,0
chr1	223116240	rs61746477	G	A	1584.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DB;DP=143;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.94;SOR=0.658;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,62:143:99:1593,0,2220
chr1	223116472	rs2609383	G	A	7045.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DB;DP=171;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=-7.800e-02;SOR=0.680;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,97:171:99:0|1:223116472_G_A:3873,0,4641:223116472
chr1	223116474	rs2789975	G	T	7045.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.124e+00;DB;DP=173;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=0.151;SOR=0.715;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:76,97:173:99:0|1:223116472_G_A:3873,0,4641:223116472
chr1	223116923	rs2789976	A	T	583.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.825;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.70;ReadPosRankSum=0.303;SOR=1.179;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr1	223152868	rs1815607	G	A	3365.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.76;SOR=3.588;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:954,87,0
chr1	223156214	rs2926160	C	T	401.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.91;SOR=4.804;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	223156280	rs10626845	C	CTT	805.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=-6.950e-01;SOR=1.609;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:89:89,0,130
chr1	223156382	rs2926159	C	T	6057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.14;SOR=1.428;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1818,186,0
chr1	223168213	rs2609359	T	C	2654.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=34;ExcessHet=3.9794;FS=2.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=0.265;SOR=1.107;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:363,0,494
chr1	223177574	rs2609355	A	G	2279.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DB;DP=77;ExcessHet=3.9794;FS=0.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.653;SOR=0.598;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,37:77:99:1038,0,1171
chr1	223283910	rs7512943	A	G	7897.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.90;SOR=1.651;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2321,225,0
chr1	223284528	rs5744174	A	G	646.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=46;ExcessHet=3.0103;FS=2.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.429;SOR=1.148;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:655,0,615
chr1	223284599	rs2072493	T	C	947.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DB;DP=54;ExcessHet=3.0103;FS=2.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.607;SOR=0.421;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,35:54:99:956,0,491
chr1	223286551	rs1773727	A	C	166.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=2.000e-03;SOR=0.368;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,5:13:99:0|1:223286551_A_C:175,0,442:223286551
chr1	223286561	rs1773729	T	G	143.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=0.328;SOR=0.495;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:223286551_A_C:152,0,341:223286551
chr1	223397037	rs851149	T	C	1767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=137;ExcessHet=3.0103;FS=0.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-1.066e+00;SOR=0.593;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,66:137:99:1776,0,1695
chr1	223441672	rs3820596	A	G	384.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-9.650e-01;SOR=0.495;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:249,0,292
chr1	223465569	rs1713221	C	T	143.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.47;SOR=3.258;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr1	223532570	rs1547788	T	C	635.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DB;DP=50;ExcessHet=3.0103;FS=3.989;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=2.68;SOR=0.317;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:644,0,562
chr1	223567803	rs10907376	G	A	2067.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.659e+00;DB;DP=145;ExcessHet=3.0103;FS=3.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.301;SOR=0.461;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,74:145:99:2076,0,2135
chr1	223712863	rs75851519	C	A	377.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DB;DP=35;ExcessHet=3.0103;FS=2.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-9.060e-01;SOR=0.597;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,13:35:99:386,0,624
chr1	223714950	rs61823523	G	A	717.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.62;SOR=4.514;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	223716349	rs4072246	G	A	6099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=1.584;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1985,185,0
chr1	223717236	rs34276634	C	A	378.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=4.804;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:395,30,0
chr1	223717379	rs61823524	A	C	5848.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=73;ExcessHet=3.0103;FS=5.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.04;ReadPosRankSum=0.276;SOR=1.812;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2377,219,0
chr1	223717484	rs34158997	G	A	10845.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.57;SOR=0.882;VQSLOD=3.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3569,346,0
chr1	223718462	rs61823525	G	A	2635.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=35;ExcessHet=3.0103;FS=3.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.36;ReadPosRankSum=0.804;SOR=1.936;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1225,105,0
chr1	223718518	rs61823552	C	A	4779.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.08;ReadPosRankSum=-1.632e+00;SOR=0.996;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1967,180,0
chr1	223722646	rs34630115	T	TA	1014.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.456;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=2.02;SOR=1.958;VQSLOD=6.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:36:317,36,0
chr1	223722760	rs34588801	A	C	601.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236e+00;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.920e-01;SOR=0.752;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:610,0,684
chr1	223724559	rs77191447	G	A	653.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.51;SOR=3.500;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:670,54,0
chr1	223728083	rs202073012	A	T	67.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=43.00;QD=33.74;SOR=2.303;VQSLOD=-3.850e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	223799857	rs34786756	C	T	6105.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.770e-01;DB;DP=85;ExcessHet=3.0103;FS=2.728;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=-6.900e-02;SOR=0.513;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2595,254,0
chr1	223806211	rs34079465	T	A	571.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.09;ReadPosRankSum=0.674;SOR=0.941;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:338,30,0
chr1	223813299	rs34993691	G	A	1891.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.93;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=0.860;SOR=3.076;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:776,60,0
chr1	223813586	rs35539373	G	T	6143.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=90;ExcessHet=3.0103;FS=2.261;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.60;ReadPosRankSum=1.29;SOR=0.527;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2881,260,0
chr1	223814671	rs61825208	A	T	1764.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=21;ExcessHet=3.0103;FS=2.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=0.729;SOR=1.133;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:685,63,0
chr1	223815575	rs34187970	G	A	2973.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.701;DB;DP=33;ExcessHet=3.0103;FS=2.859;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.16;ReadPosRankSum=0.482;SOR=1.418;VQSLOD=6.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1108,99,0
chr1	223816322	rs66602040	A	G	8067.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.760e-01;DB;DP=95;ExcessHet=3.0103;FS=1.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=-6.250e-01;SOR=0.551;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3147,285,0
chr1	223816347	rs61825210	A	G	8437.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.146e+00;DB;DP=101;ExcessHet=3.0103;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=1.42;SOR=0.629;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,100:101:99:3106,263,0
chr1	223816383	rs71644745	G	A	3635.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=0.877;VQSLOD=19.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3652,348,0
chr1	223816577	rs61825211	T	C	1618.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.639e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=-1.494e+00;SOR=0.839;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:378,30,0
chr1	223841836	rs2105405	C	T	348.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.68;SOR=2.494;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:365,33,0
chr1	223841877	rs2105406	C	G	533.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=1.739;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:550,51,0
chr1	223853440	rs10916015	A	G	1315.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=6.994;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:313,24,0
chr1	223900408	rs25655	C	G	20351.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=1.072;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,213:213:99:6807,638,0
chr1	223905532	rs17596	G	A	5658.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.730e-01;DB;DP=86;ExcessHet=3.9794;FS=4.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=0.595;SOR=0.504;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2709,257,0
chr1	223931411	rs1222138	G	A	270.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=0.941;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	223931648	rs1222137	T	C	3091.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=28.04;SOR=2.356;VQSLOD=5.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:891,72,0
chr1	223933313	rs1222134	A	T	739.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.89;SOR=4.712;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:390,33,0
chr1	223934418	.	G	A	51.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=54.74;MQRankSum=-2.287e+00;NEGATIVE_TRAIN_SITE;QD=5.14;ReadPosRankSum=1.50;SOR=0.169;VQSLOD=-3.503e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:223934418_G_A:60,0,1193:223934418
chr1	223934420	.	G	A	51.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=54.74;MQRankSum=-2.287e+00;NEGATIVE_TRAIN_SITE;QD=5.14;ReadPosRankSum=1.50;SOR=0.169;VQSLOD=-3.503e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:223934418_G_A:60,0,1193:223934418
chr1	223934424	.	C	T	51.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=54.74;MQRankSum=-2.287e+00;NEGATIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=1.35;SOR=0.169;VQSLOD=-3.471e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:223934418_G_A:60,0,1193:223934418
chr1	223934433	.	C	T	39.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436e+00;DP=14;ExcessHet=3.0103;FS=2.963;MQ=56.30;MQRankSum=-3.445e+00;NEGATIVE_TRAIN_SITE;QD=2.81;ReadPosRankSum=1.46;SOR=0.148;VQSLOD=-3.695e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:223934418_G_A:48,0,1307:223934418
chr1	223934720	rs17600	G	A	9362.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=0.752;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4369,443,0
chr1	223938565	rs1153968	A	C	5089.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=104;ExcessHet=3.9794;FS=7.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.021;SOR=1.061;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,53:104:99:1320,0,1169
chr1	223954080	rs17599	A	C	3181.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=86;ExcessHet=6.9897;FS=2.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-5.330e-01;SOR=0.879;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1053,0,1025
chr1	224191284	rs3933009	A	G	1132.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.267;DB;DP=13;ExcessHet=3.0103;FS=5.069;MQ=42.01;MQRankSum=-3.309e+00;QD=17.17;ReadPosRankSum=-2.100e-02;SOR=0.267;VQSLOD=-3.117e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:431,39,0
chr1	224301749	rs6690695	C	T	698.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;DB;DP=10;ExcessHet=3.9794;FS=2.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=2.47;SOR=0.337;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:351,30,0
chr1	224302154	rs3066024	T	TGAG	12856.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=27.98;SOR=1.798;VQSLOD=6.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,93:93:99:4163,280,0
chr1	224302230	rs2280291	C	G	1575.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.230e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=1.16;SOR=1.002;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:804,60,0
chr1	224318001	rs1810344	A	G	366.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=1.981;VQSLOD=19.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
chr1	224318151	rs10651854	T	TTTG	4482.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.38;SOR=2.880;VQSLOD=6.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1260,84,0
chr1	224321984	rs1472167	C	T	4697.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=2.694;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1280,105,0
chr1	224345012	rs7543762	G	A	1981.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.60;SOR=3.570;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:382,30,0
chr1	224379893	.	C	CT	195.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.68;ReadPosRankSum=0.435;SOR=0.776;VQSLOD=5.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,10:23:99:171,0,251
chr1	224424442	rs1976788	A	G	847.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=4.804;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:209,18,0
chr1	224424469	rs1976787	T	C	482.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=5.136;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	224444628	rs10799556	C	T	7099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.083;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2320,225,0
chr1	224444901	rs2897055	G	C	720.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=5.784;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:263,18,0
chr1	224444982	rs2405063	A	C	312.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=4.407;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	224456027	rs3831972	C	CCA	184.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=0.524;SOR=1.911;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:76:120,0,76
chr1	224468921	rs79564051	C	T	1495.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=37;ExcessHet=6.9897;FS=0.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.03;SOR=0.812;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:420,0,511
chr1	224468986	rs112070546	C	CGTGT	1022.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.84;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.34;MQRankSum=0.00;QD=31.94;ReadPosRankSum=1.96;SOR=1.347;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr1	224473849	rs16846031	A	C	1570.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;DB;DP=44;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-1.521e+00;SOR=0.669;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:460,0,554
chr1	224473917	rs11341380	GT	G	411.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265e+00;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.36;ReadPosRankSum=-2.150e-01;SOR=0.646;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:18:95:95,0,219
chr1	224482216	rs2404783	T	C	900.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529e+00;DB;DP=13;ExcessHet=6.9897;FS=6.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.735;SOR=2.144;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:85:299,0,85
chr1	224484410	rs16846214	C	A	1414.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227e+00;DB;DP=21;ExcessHet=6.9897;FS=3.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-9.700e-02;SOR=1.432;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:462,0,217
chr1	224489411	rs73130464	A	G	110.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-1.350e-01;SOR=0.582;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:67:118,0,67
chr1	224491264	rs4654018	T	A	2764.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.43;SOR=8.526;VQSLOD=24.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:540,42,0
chr1	224492381	rs7522125	C	T	4158.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=2.488;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1024,84,0
chr1	224492746	rs3754090	C	T	6151.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133e+00;DB;DP=151;ExcessHet=6.9897;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=1.18;SOR=0.696;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,62:151:99:1455,0,2280
chr1	224493002	rs7532244	T	C	820.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.98;SOR=6.091;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr1	224495852	rs7534447	C	T	3123.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398e+00;DB;DP=73;ExcessHet=6.9897;FS=1.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.098;SOR=0.701;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,36:73:99:890,0,970
chr1	224499212	rs7531894	A	G	471.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.34;SOR=3.767;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:146,12,0
chr1	224505570	rs3066969	T	TAA	6765.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.88;SOR=1.609;VQSLOD=4.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1874,129,0
chr1	224505719	rs4436353	T	G	814.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=4.615;VQSLOD=17.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:291,21,0
chr1	224514275	rs4653578	G	A	2204.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.10;SOR=5.784;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:803,60,0
chr1	224517842	rs2896990	C	T	3784.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204e+00;DB;DP=103;ExcessHet=6.9897;FS=1.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-1.328e+00;SOR=0.820;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,47:103:99:1125,0,1464
chr1	224517907	rs4146965	A	T	2240.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.710e-01;DB;DP=63;ExcessHet=6.9897;FS=3.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.821;SOR=0.995;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:650,0,915
chr1	224518074	rs4146966	T	C	346.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311e+00;DB;DP=12;ExcessHet=6.9897;FS=5.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.199;SOR=2.139;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:113,0,255
chr1	224544529	rs7517754	A	G	1562.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=19;ExcessHet=1.5490;FS=13.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.65;ReadPosRankSum=-1.760e-01;SOR=3.886;VQSLOD=12.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:197,0,383
chr1	224567004	rs4654037	G	A	314.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=4.407;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr1	224585958	rs7522956	A	C	1124.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=37;ExcessHet=3.9794;FS=2.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-5.140e-01;SOR=0.462;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:500,0,566
chr1	224588373	rs35169600	G	A	97.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.545;SOR=0.693;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:97:105,0,97
chr1	224588825	rs7518109	T	A	368.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-01;DB;DP=12;ExcessHet=3.9794;FS=2.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-1.380e-01;SOR=0.260;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:186,0,180
chr1	224599406	rs372861471	C	CT	84.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=0.00;SOR=0.569;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:14:62,0,14
chr1	224600910	rs10916612	C	A	4394.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.810e+00;DB;DP=40;ExcessHet=3.0103;FS=15.405;MQ=59.93;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=32.80;ReadPosRankSum=-2.530e-01;SOR=0.315;VQSLOD=-7.102e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:224600910_C_A:1680,120,0:224600910
chr1	224600920	rs10916613	C	A	5451.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.93;QD=36.99;SOR=0.945;VQSLOD=1.84;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:224600910_C_A:1746,129,0:224600910
chr1	224605825	rs12739486	A	T	225.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-7.860e-01;SOR=0.425;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,104
chr1	224621368	rs2405033	G	C	5432.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=2.030;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1481,120,0
chr1	224868596	rs7525096	A	C	4714.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.697e+00;DB;DP=76;ExcessHet=3.9794;FS=0.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-5.300e-02;SOR=0.733;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2441,228,0
chr1	224872222	rs3738365	G	A	220.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=-4.310e-01;SOR=1.085;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr1	224872443	rs3738364	A	G	8038.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.81;DB;DP=82;ExcessHet=3.0103;FS=5.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=1.62;SOR=0.398;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2680,246,0
chr1	224872473	rs3738363	A	G	6559.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.270e+00;DB;DP=106;ExcessHet=3.9794;FS=1.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.701;SOR=0.610;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3109,318,0
chr1	224926997	.	CT	C	320.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.160e-01;DP=4;ExcessHet=3.0103;FS=3.699;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.00;SOR=0.180;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:5:42,5,0
chr1	225211684	rs2501114	G	A	861.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=6.184;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr1	225230608	rs2501107	C	T	11661.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=0.826;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3181,319,0
chr1	225237850	rs2501086	A	C	2130.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.96;SOR=5.247;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:525,48,0
chr1	225266966	rs3105559	C	G	6053.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=0.913;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1660,150,0
chr1	225268343	rs3128651	A	G	12432.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=0.972;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,95:95:99:1|1:225268343_A_G:4191,286,0:225268343
chr1	225268346	rs3128652	G	A	12374.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.11;SOR=1.046;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,93:93:99:1|1:225268343_A_G:4167,283,0:225268343
chr1	225270409	rs3128655	A	T	6164.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=1.767;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1712,165,0
chr1	225273248	rs3128658	G	T	5686.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=28.44;SOR=2.805;VQSLOD=5.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1411,135,0
chr1	225273633	rs3105565	T	A	1175.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.73;SOR=6.869;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:214,18,0
chr1	225477491	rs12024361	C	T	270.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-1.420e-01;SOR=0.223;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:279,0,229
chr1	225477546	rs12042076	A	C	385.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.130e-01;DB;DP=29;ExcessHet=3.0103;FS=4.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-7.210e-01;SOR=0.148;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:394,0,486
chr1	225477793	rs12042900	T	G	439.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149e+00;DB;DP=25;ExcessHet=3.0103;FS=2.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.962;SOR=0.257;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:448,0,225
chr1	225506262	rs4653418	G	A	4454.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.490e-01;DB;DP=64;ExcessHet=3.9794;FS=4.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=1.53;SOR=1.013;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2054,192,0
chr1	225510641	rs1532771	T	C	1071.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.52;ReadPosRankSum=1.55;SOR=1.347;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:500,36,0
chr1	225512402	rs75859387	GT	G	4422.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.04;DB;DP=59;ExcessHet=3.9794;FS=5.614;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-4.430e-01;SOR=1.049;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1928,178,0
chr1	225526103	rs12408441	C	T	472.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.79;ReadPosRankSum=-8.160e-01;SOR=2.179;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	225528183	rs3856145	C	A	8021.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.38;DB;DP=99;ExcessHet=3.0103;FS=2.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.63;ReadPosRankSum=-1.293e+00;SOR=0.930;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3134,297,0
chr1	225533684	rs6667999	A	G	3696.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=57;ExcessHet=3.0103;FS=3.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=-6.720e-01;SOR=0.996;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1647,122,0
chr1	225534219	rs7527925	T	C	9182.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.61;DB;DP=102;ExcessHet=3.0103;FS=1.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=-4.590e-01;SOR=0.781;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3279,306,0
chr1	225534348	rs7535953	G	A	4073.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.805;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.86;ReadPosRankSum=-8.340e-01;SOR=0.830;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1240,102,0
chr1	225539665	rs3856150	T	A	1165.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.960e-01;DB;DP=9;ExcessHet=3.0103;FS=8.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.31;ReadPosRankSum=-2.063e+00;SOR=5.042;VQSLOD=12.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:366,27,0
chr1	225541308	rs3856151	A	G	135.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.90;SOR=3.258;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr1	225541372	rs6676935	A	G	615.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.054e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.31;ReadPosRankSum=-3.190e-01;SOR=1.802;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:194,15,0
chr1	225545301	rs11274314	A	AATATGTGATAT	1094.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.62;SOR=5.784;VQSLOD=6.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:15:224,15,0
chr1	225545580	rs12745950	A	C	5466.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=-2.280e-01;SOR=0.682;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:225545580_A_C:1578,111,0:225545580
chr1	225545588	rs34993311	A	G	3938.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=31;ExcessHet=3.9794;FS=4.198;MQ=60.00;MQRankSum=0.00;QD=26.26;ReadPosRankSum=2.70;SOR=0.385;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:99:1|1:225545580_A_C:1477,99,0:225545580
chr1	225545756	rs12750410	T	G	518.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.42;ReadPosRankSum=1.15;SOR=3.258;VQSLOD=18.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr1	225546172	rs9659299	C	G	1224.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.224e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.62;ReadPosRankSum=0.864;SOR=3.611;VQSLOD=17.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:516,42,0
chr1	225552624	rs10495239	G	A	2657.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.180e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=1.07;SOR=0.701;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:899,95,0
chr1	225552650	rs12563830	C	T	2396.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.270e-01;DB;DP=26;ExcessHet=3.0103;FS=0.919;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=2.91;SOR=0.565;VQSLOD=21.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:78:794,78,0
chr1	225555512	rs11578981	C	T	2781.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=117;ExcessHet=3.9794;FS=0.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-3.770e-01;SOR=0.714;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,61:117:99:1551,0,1333
chr1	225555602	rs12737248	T	G	2467.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=97;ExcessHet=3.9794;FS=1.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=1.05;SOR=0.564;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,55:97:99:1465,0,1114
chr1	225562385	rs10915816	C	T	4325.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.050e-01;DB;DP=52;ExcessHet=3.0103;FS=7.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=-1.280e-01;SOR=0.264;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1640,156,0
chr1	225565015	rs3856154	T	C	1098.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-5.270e-01;SOR=0.716;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:455,0,545
chr1	225565073	rs3856155	C	T	808.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=37;ExcessHet=3.9794;FS=0.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.015;SOR=0.869;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:323,0,560
chr1	225567813	rs61615439	C	T	719.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=15;ExcessHet=3.9794;FS=3.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.196;SOR=1.660;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:284,0,172
chr1	225569241	rs950210	T	G	1718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.450e-01;DB;DP=53;ExcessHet=3.9794;FS=0.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.091;SOR=0.783;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,32:53:99:882,0,506
chr1	225576058	rs6679430	T	C	896.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=36;ExcessHet=3.9794;FS=0.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-1.750e+00;SOR=0.864;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:387,0,518
chr1	225576311	rs10753405	A	G	688.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=1.96;SOR=0.557;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:313,0,120
chr1	225577648	rs12134158	C	T	631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680e+00;DB;DP=26;ExcessHet=3.9794;FS=4.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-2.500e-02;SOR=0.181;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:382,0,499
chr1	225579918	rs41268717	A	T	767.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.296e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=1.12;SOR=0.578;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:251,0,517
chr1	225591893	rs10799305	G	T	594.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=5.549;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr1	225591995	rs77692907	C	T	813.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DB;DP=26;ExcessHet=3.9794;FS=6.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-4.440e-01;SOR=2.093;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:319,0,432
chr1	225597846	rs1011319	A	G	125.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=1.65;SOR=0.941;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr1	225598309	rs1538930	A	C	287.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.952;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:106,0,142
chr1	225600351	.	T	TA	178.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DP=22;ExcessHet=3.9794;FS=2.700;MQ=59.91;MQRankSum=0.00;QD=4.96;ReadPosRankSum=0.178;SOR=1.195;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,6:22:75:75,0,279
chr1	225601647	rs3766928	C	T	526.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=38;ExcessHet=3.9794;FS=3.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.11;ReadPosRankSum=-1.140e-01;SOR=0.382;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,11:38:99:230,0,726
chr1	225602823	rs6666171	A	T	925.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=24;ExcessHet=3.9794;FS=2.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-5.900e-02;SOR=1.215;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:261,0,364
chr1	225603103	rs6702433	C	T	1215.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=-1.242e+00;SOR=2.780;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:240,21,0
chr1	225607144	rs2230419	C	T	2620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DB;DP=18;ExcessHet=3.0103;FS=4.748;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=-5.900e-02;SOR=1.352;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:652,54,0
chr1	225609763	rs12410357	G	A	1404.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030e+00;DB;DP=48;ExcessHet=3.9794;FS=0.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.176;SOR=0.586;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:686,0,645
chr1	225609884	rs1056608	A	G	4109.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.830e-01;DB;DP=59;ExcessHet=3.9794;FS=2.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=1.26;SOR=0.675;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1934,177,0
chr1	225611661	rs1056607	C	T	1547.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=68;ExcessHet=3.9794;FS=1.402;MQ=59.93;MQRankSum=1.09;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.215;SOR=0.831;VQSLOD=2.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,28:68:99:700,0,1022
chr1	225611845	rs1340867	C	T	1209.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=34;ExcessHet=3.9794;FS=5.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.570;SOR=0.232;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:528,0,393
chr1	225685621	rs145776060	TAAG	T	2803.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=2.694;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:985,66,0
chr1	225707033	rs71170086	ATCCAGGCGTTCCTGCCGC	A	2772.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DB;DP=107;ExcessHet=3.9794;FS=2.134;MQ=59.95;MQRankSum=0.866;QD=13.20;ReadPosRankSum=-7.880e-01;SOR=0.514;VQSLOD=0.180;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,47:107:99:1185,0,2780
chr1	225707271	.	GA	G	69.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DP=28;ExcessHet=6.9897;FS=1.002;MQ=60.00;MQRankSum=0.00;QD=0.98;ReadPosRankSum=0.204;SOR=0.890;VQSLOD=5.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,4:28:11:11,0,484
chr1	225965832	rs1461957	G	T	1369.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.427e+00;DB;DP=126;ExcessHet=3.0103;FS=1.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=0.938;SOR=0.927;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,61:126:99:1378,0,1605
chr1	225970793	rs59058799	T	TAA	1276.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.90;SOR=6.804;VQSLOD=5.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:312,21,0
chr1	225974486	rs11441169	T	TG	7064.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.380e+00;DB;DP=82;ExcessHet=3.0103;FS=2.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.58;ReadPosRankSum=-1.381e+00;SOR=0.919;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3161,256,0
chr1	226016381	rs41266229	G	A	1249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=-1.333e+00;SOR=0.866;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,31:58:99:0|1:226016381_G_A:1258,0,1617:226016381
chr1	226016397	rs41266231	G	A	1519.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=-9.020e-01;SOR=0.600;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,42:78:99:0|1:226016381_G_A:1528,0,1811:226016381
chr1	226019371	rs3817268	G	T	62.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=0.00;SOR=2.225;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:71,0,34
chr1	226019774	rs2260863	G	C	732.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=13;ExcessHet=3.9794;FS=2.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=0.00;SOR=1.697;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:180,0,221
chr1	226026241	rs4149223	C	G	1919.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.850;DB;DP=18;ExcessHet=3.0103;FS=4.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=0.122;SOR=2.794;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:780,54,0
chr1	226026406	rs2234922	A	G	1831.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862e+00;DB;DP=160;ExcessHet=3.0103;FS=0.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-1.348e+00;SOR=0.590;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,77:160:99:1840,0,2200
chr1	226027067	.	GGTGT	G,GGTGTGTGT	1009.05	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.665;DP=21;ExcessHet=3.9794;FS=3.009;MQ=59.89;MQRankSum=0.00;QD=18.69;ReadPosRankSum=1.22;SOR=1.408;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,11,6:21:99:725,227,204,503,0,487
chr1	226033083	rs4653695	A	C	397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=-7.120e-01;SOR=0.616;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:59:196,0,59
chr1	226036309	rs360063	A	G	2167.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-01;DB;DP=43;ExcessHet=6.9897;FS=5.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=-6.820e-01;SOR=0.382;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:629,0,494
chr1	226040404	rs1009668	C	T	2640.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250e-01;DB;DP=47;ExcessHet=6.9897;FS=1.839;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.266;SOR=0.542;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:580,0,601
chr1	226040687	rs111990	A	C	682.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=0.439;SOR=0.804;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:389,33,0
chr1	226041842	rs151138548	CGTGCAGAAAT	C	203.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.64;ReadPosRankSum=0.674;SOR=2.303;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr1	226044489	rs60955535	G	GC	3692.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.39;SOR=0.881;VQSLOD=5.18;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1206,111,0
chr1	226044766	rs9919303	G	A	2430.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218e+00;DB;DP=84;ExcessHet=6.9897;FS=0.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-2.234e+00;SOR=0.790;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,38:84:99:972,0,1209
chr1	226046648	.	ATGTGTGTG	A	984.31	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.52;POSITIVE_TRAIN_SITE;QD=25.06;SOR=2.226;VQSLOD=4.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr1	226048744	rs34700682	CA	C	4398.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140e-01;DB;DP=80;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.161;SOR=0.683;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,35:80:99:1070,0,1424
chr1	226050815	rs360081	A	G	1661.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.45;SOR=3.912;VQSLOD=19.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:226050815_A_G:656,45,0:226050815
chr1	226050832	rs360082	T	C	1501.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.97;SOR=3.611;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:39:1|1:226050815_A_G:581,39,0:226050815
chr1	226053805	rs7515156	G	A	1442.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.484;SOR=0.769;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,25:39:99:734,0,260
chr1	226054656	rs360084	G	A	2359.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=6.770;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:683,51,0
chr1	226054681	rs360085	T	A	3047.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.25;SOR=5.892;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:778,66,0
chr1	226054714	rs2292563	G	A	1811.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=42;ExcessHet=6.9897;FS=2.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.233;SOR=1.115;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:605,0,576
chr1	226055595	rs2292564	G	A	3346.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.210e-01;DB;DP=117;ExcessHet=6.9897;FS=0.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-2.300e-02;SOR=0.763;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,52:117:99:1263,0,1746
chr1	226058534	rs360090	C	G	1952.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=3.528;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:700,54,0
chr1	226059115	rs74473459	C	T	185.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.88;ReadPosRankSum=-6.740e-01;SOR=2.303;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:26:194,0,26
chr1	226059166	rs146795542	G	C	70.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:79,0,31
chr1	226064745	rs360093	G	T	139.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=-1.036e+00;SOR=0.527;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr1	226064846	rs360094	A	G	649.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=6.9897;FS=1.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=0.660;SOR=0.458;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:78,0,66
chr1	226065409	rs360095	G	A	828.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=6.9897;FS=8.557;MQ=59.63;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=1.47;SOR=2.760;VQSLOD=-3.737e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:20:226,0,20
chr1	226074563	rs360057	T	G	12175.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.35;DB;DP=325;ExcessHet=6.9897;FS=3.215;MQ=58.86;MQRankSum=-5.676e+00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.494;SOR=0.635;VQSLOD=-1.094e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:177,148:325:99:4108,0,4670
chr1	226075410	rs57114136	GC	G	8994.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=253;ExcessHet=6.9897;FS=10.227;MQ=59.97;MQRankSum=0.00;QD=12.07;ReadPosRankSum=1.43;SOR=1.440;VQSLOD=2.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:109,144:253:99:3384,0,2441
chr1	226076919	rs360058	G	T	675.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=13;ExcessHet=6.9897;FS=1.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.345;SOR=0.789;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:173,0,177
chr1	226108200	rs73131849	C	T	1505.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.340e-01;DB;DP=42;ExcessHet=6.9897;FS=2.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.227;SOR=0.960;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:538,0,512
chr1	226108894	rs10915897	C	T	1633.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=-1.870e-01;SOR=0.818;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,40:64:99:0|1:226108894_C_T:1642,0,1418:226108894
chr1	226108899	rs41307726	T	G	1713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DB;DP=73;ExcessHet=3.0103;FS=0.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=0.221;SOR=0.500;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,45:73:99:0|1:226108894_C_T:1722,0,1446:226108894
chr1	226110243	rs10915898	G	A	346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461e+00;DB;DP=32;ExcessHet=3.0103;FS=3.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-1.064e+00;SOR=0.223;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:355,0,373
chr1	226112074	rs61584476	GC	G	558.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=4.174;VQSLOD=5.47;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,6:6:18:214,18,0
chr1	226125543	rs60825997	G	GA	6937.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=32.01;SOR=3.383;VQSLOD=5.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2663,217,0
chr1	226127443	rs74578461	G	C	13069.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DB;DP=282;ExcessHet=6.9897;FS=2.868;MQ=59.25;MQRankSum=-2.978e+00;NEGATIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-1.360e-01;SOR=0.946;VQSLOD=-1.625e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:136,146:282:99:4431,0,3761
chr1	226179909	rs1885254	A	G	968.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.40;ReadPosRankSum=0.700;SOR=1.609;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr1	226180026	rs72757014	C	T	925.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.340e-01;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=59.76;MQRankSum=-8.580e-01;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-8.860e-01;SOR=0.716;VQSLOD=0.960;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,34:61:99:934,0,679
chr1	226180816	rs61170616	C	CT	585.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690e-01;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.74;ReadPosRankSum=-6.120e-01;SOR=0.593;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,14:18:45:279,0,45
chr1	226182800	rs4653702	A	G	961.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=4.003;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:355,24,0
chr1	226252232	rs2036870	C	T	3574.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=1.959;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1095,104,0
chr1	226253127	rs1511056	T	G	1552.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=4.461;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
chr1	226253316	rs1849032	G	T	5290.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.49;SOR=1.040;VQSLOD=4.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1517,145,0
chr1	226334578	rs1219666	G	A	3423.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=2.718;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:835,66,0
chr1	226346856	rs113921278	A	G	969.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=75;ExcessHet=3.0103;FS=0.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-1.162e+00;SOR=0.941;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,36:75:99:978,0,1031
chr1	226349254	.	TTTC	T	2810.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470e+00;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.78;ReadPosRankSum=-5.380e-01;SOR=0.695;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,71:109:99:2819,0,1466
chr1	226352498	rs2306120	T	G	7514.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=101;ExcessHet=3.0103;FS=1.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-4.800e-01;SOR=0.597;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,100:101:99:3268,293,0
chr1	226352812	rs58322813	T	C	63.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.431;SOR=0.307;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:72:0|1:226352812_T_C:72,0,306:226352812
chr1	226352830	rs58416350	A	C	69.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:226352812_T_C:78,0,235:226352812
chr1	226353349	rs1219664	G	T	517.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.68;SOR=5.283;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr1	226353521	rs2306121	T	A	3450.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750e-01;DB;DP=55;ExcessHet=3.9794;FS=0.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=2.83;SOR=0.811;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:683,0,676
chr1	226411135	rs10915961	G	A	272.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=23.53;SOR=2.584;VQSLOD=18.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr1	226411317	rs10915962	C	T	2966.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=1.000;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1543,159,0
chr1	226420040	rs61836886	T	C	407.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.00;SOR=4.977;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:424,33,0
chr1	226420722	rs2306119	A	G	557.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.238e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=-8.010e-01;SOR=0.582;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr1	226438449	rs6678137	T	C	3645.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=-1.620e+00;SOR=0.604;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1213,108,0
chr1	226474132	rs10799347	G	A	3687.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.013;DB;DP=48;ExcessHet=3.0103;FS=0.989;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=-4.580e-01;SOR=0.508;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1430,143,0
chr1	226485327	rs11390947	A	AT	4700.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=2.272;VQSLOD=5.52;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2297,222,0
chr1	226550437	rs1891108	G	A	594.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.14;ReadPosRankSum=0.366;SOR=3.258;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:226550437_G_A:180,12,0:226550437
chr1	226550442	rs1891107	T	C	626.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.370e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.79;ReadPosRankSum=0.601;SOR=2.833;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:226550437_G_A:180,12,0:226550437
chr1	226550553	rs34228047	ATT	A,AT	1994.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.85;MQRankSum=0.00;QD=21.45;ReadPosRankSum=0.969;SOR=0.835;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,8,24:32:99:733,503,492,187,0,111
chr1	226550741	rs747659	C	T	3741.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.44;DB;DP=89;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=-3.360e-01;SOR=0.653;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2861,266,0
chr1	226551506	rs752308	T	C	402.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.58;ReadPosRankSum=-3.190e-01;SOR=3.611;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:311,24,0
chr1	226551529	rs752307	C	G	888.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.366;SOR=4.003;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:440,30,0
chr1	226553485	rs118165556	A	C	1890.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.540e-01;DB;DP=12;ExcessHet=3.0103;FS=6.853;MQ=59.71;MQRankSum=0.00;QD=33.17;ReadPosRankSum=-5.410e-01;SOR=2.187;VQSLOD=1.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:45:1|1:226553485_A_C:675,45,0:226553485
chr1	226553486	rs146042055	C	A	1935.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.41;DB;DP=14;ExcessHet=3.0103;FS=7.224;MQ=59.73;MQRankSum=0.00;QD=31.74;ReadPosRankSum=-4.780e-01;SOR=2.376;VQSLOD=0.292;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:48:1|1:226553485_A_C:720,48,0:226553485
chr1	226553490	rs34917861	C	A	2027.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.77;DB;DP=16;ExcessHet=3.0103;FS=7.434;MQ=59.74;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=31.20;ReadPosRankSum=-1.910e-01;SOR=2.551;VQSLOD=-5.854e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:226553485_A_C:720,48,0:226553485
chr1	226553494	rs11378196	C	CA	2107.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=18;ExcessHet=3.0103;FS=14.059;MQ=59.77;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=0.438;SOR=3.019;VQSLOD=1.05;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:226553485_A_C:777,54,0:226553485
chr1	226553934	rs2271349	A	C	906.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=5;ExcessHet=3.0103;FS=4.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.58;ReadPosRankSum=-8.160e-01;SOR=2.670;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr1	226556094	rs1805400	T	C	6609.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=1.711;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2213,186,0
chr1	226558030	.	C	CA	1254.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DP=88;ExcessHet=3.0103;FS=2.971;MQ=60.00;MQRankSum=0.00;QD=14.25;ReadPosRankSum=1.74;SOR=1.054;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,40:88:99:1263,0,1513
chr1	226566726	rs907190	A	C	2705.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DB;DP=40;ExcessHet=3.0103;FS=2.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-1.503e+00;SOR=1.390;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1267,120,0
chr1	226567008	rs732284	C	G	2398.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=0.859;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2415,228,0
chr1	226567563	rs2271343	C	G	845.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.62;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-1.120e-01;SOR=0.673;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:602,42,0
chr1	226568875	rs373462891	G	A	1907.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DB;DP=140;ExcessHet=3.0103;FS=2.112;MQ=60.00;MQRankSum=0.00;QD=13.62;ReadPosRankSum=-1.271e+00;SOR=0.532;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,74:140:99:1916,0,1647
chr1	226570840	rs1805415	T	C	5253.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=63;ExcessHet=3.0103;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=-1.156e+00;SOR=0.778;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2201,189,0
chr1	226573364	rs1805414	A	G	8170.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.716;DB;DP=163;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.082;SOR=0.732;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:4814,488,0
chr1	226573402	rs1805408	T	C	5614.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.110e-01;DB;DP=142;ExcessHet=1.5490;FS=5.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=-1.050e-01;SOR=1.071;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4309,425,0
chr1	226574554	rs3219053	C	T	150.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=3.258;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	226576296	rs2293464	G	A	1399.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.100e-02;DB;DP=24;ExcessHet=1.5490;FS=1.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=-9.400e-01;SOR=0.936;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:798,72,0
chr1	226578099	rs1805403	T	C	1586.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.62;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.50;ReadPosRankSum=0.063;SOR=1.938;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:513,36,0
chr1	226580021	rs1805405	G	T	4359.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.441e+00;DB;DP=90;ExcessHet=1.5490;FS=5.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-7.540e-01;SOR=0.382;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2992,269,0
chr1	226580093	rs2280712	C	T	2125.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.33;SOR=0.719;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2142,221,0
chr1	226580187	rs1002153	T	C	2608.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.61;DB;DP=58;ExcessHet=1.5490;FS=7.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=-2.551e+00;SOR=1.788;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2042,174,0
chr1	226580387	rs1000033	T	G	354.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.25;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:219,15,0
chr1	226589709	rs2666428	C	T	2852.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.218;DB;DP=50;ExcessHet=3.9794;FS=4.271;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.45;ReadPosRankSum=-1.374e+00;SOR=0.368;VQSLOD=7.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1630,150,0
chr1	226589833	rs1805407	T	C	3481.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.540e-01;DB;DP=80;ExcessHet=1.5490;FS=2.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=-2.290e-01;SOR=0.469;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2588,240,0
chr1	226595389	rs4653734	C	G	208.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.80;ReadPosRankSum=-5.240e-01;SOR=0.399;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:202,18,0
chr1	226595403	rs144361550	A	AGGGCCC	280.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=5.166;MQ=60.00;MQRankSum=0.00;QD=28.48;ReadPosRankSum=-3.190e-01;SOR=0.042;VQSLOD=4.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	226789446	rs731039	G	A	93.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=56.86;MQRankSum=-5.240e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=-2.600e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:102,0,61
chr1	226822689	rs116253179	C	T	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.82;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=-5.350e-01;SOR=0.427;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,18:56:99:534,0,1147
chr1	226829990	rs17522524	T	C	206.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.14;SOR=0.340;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:215,0,370
chr1	226835214	rs1144835	A	G	999.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;DB;DP=15;ExcessHet=6.9897;FS=3.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=0.374;SOR=2.133;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:261,0,190
chr1	226836590	rs2298169	A	G	1759.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.887;SOR=0.769;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:743,0,555
chr1	226923146	rs11337528	GT	G	3790.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=44;ExcessHet=3.9794;FS=14.891;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.221;SOR=1.748;VQSLOD=0.931;culprit=FS	GT:AD:DP:GQ:PL	0/1:25,19:44:99:574,0,799
chr1	226923264	rs708775	G	A	6751.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=78;ExcessHet=3.9794;FS=2.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=1.18;SOR=0.540;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,37:78:99:1075,0,1211
chr1	226923505	rs708776	G	T	20584.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=214;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.47;ReadPosRankSum=-1.006e+00;SOR=0.291;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,214:214:99:6883,642,0
chr1	226923938	rs6667260	A	C	12559.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.69;DB;DP=180;ExcessHet=3.9794;FS=0.565;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=-5.870e-01;SOR=0.653;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,94:180:99:2905,0,2449
chr1	226924875	rs11278152	ACTGCCGCTG	A	11510.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=144;ExcessHet=3.9794;FS=3.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.42;ReadPosRankSum=-2.710e-01;SOR=0.473;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:75,69:144:99:2578,0,6977
chr1	227068246	.	A	AGACAGCGATCACTCAGCCTCTG	844.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.77;MQRankSum=0.00;QD=27.24;ReadPosRankSum=0.230;SOR=0.756;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:440,0,379
chr1	227069367	rs116567356	G	A	59.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:28:68,0,28
chr1	227069677	rs11405	T	C	10016.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371e+00;DB;DP=166;ExcessHet=3.9794;FS=1.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=-2.280e-01;SOR=0.825;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,80:166:99:1827,0,2082
chr1	227069737	rs6759	C	T	2567.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044e+00;DB;DP=116;ExcessHet=3.9794;FS=2.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-5.590e-01;SOR=0.870;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,55:116:99:1300,0,1560
chr1	227071364	rs1295643	G	A	366.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=22;ExcessHet=3.9794;FS=1.852;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=0.727;SOR=1.179;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,6:22:99:141,0,508
chr1	227071377	rs1295644	T	C	506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210e-01;DB;DP=27;ExcessHet=3.9794;FS=3.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=-1.740e-01;SOR=1.371;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,7:27:99:208,0,703
chr1	227071525	rs1046240	C	T	2061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.630e-01;DB;DP=90;ExcessHet=3.9794;FS=1.155;MQ=59.95;MQRankSum=1.20;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.938;SOR=0.589;VQSLOD=2.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,38:90:99:845,0,1377
chr1	227073410	rs2236910	G	C	7821.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=148;ExcessHet=3.9794;FS=6.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=-9.400e-02;SOR=1.158;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,63:148:99:1661,0,2023
chr1	227075984	rs1800680	G	A	143.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.647;SOR=0.307;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:152,0,309
chr1	227078955	rs2802267	T	C	2051.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.283;DB;DP=31;ExcessHet=3.9794;FS=1.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=2.08;SOR=0.971;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:361,0,330
chr1	227079222	rs2236915	C	G	1273.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=38;ExcessHet=3.9794;FS=1.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.36;SOR=0.498;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:580,0,338
chr1	227081622	rs10753428	A	G	2159.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349e+00;DB;DP=46;ExcessHet=6.9897;FS=6.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.44;SOR=1.259;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:625,0,630
chr1	227081850	rs2855562	G	A	2142.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.794e+00;DB;DP=40;ExcessHet=1.5490;FS=1.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=0.00;SOR=0.990;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,14:40:99:368,0,813
chr1	227083550	rs8383	C	T	167.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:71,0,64
chr1	227085155	rs11802358	G	A	89.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.010e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=-1.803e+00;SOR=1.022;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,3:9:98:0|1:227085142_T_G:98,0,197:227085142
chr1	227149203	rs11549708	G	A	667.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.493;SOR=0.789;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:676,0,622
chr1	227165484	rs1888826	T	C	834.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.92;ReadPosRankSum=-8.120e-01;SOR=2.066;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:522,36,0
chr1	227169395	rs75045502	G	A	188.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=26.66;SOR=1.981;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr1	227170298	rs2297412	A	G	1976.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=2.760;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1028,90,0
chr1	227170543	rs2297413	C	G	3212.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347e+00;DB;DP=149;ExcessHet=3.9794;FS=1.500;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.458;SOR=0.593;VQSLOD=5.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,67:149:99:1600,0,2197
chr1	227171584	rs3215919	GT	G	1355.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.410e-01;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-5.070e-01;SOR=0.665;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:84:994,84,0
chr1	227171737	rs1574184	G	T	3995.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.370e+00;DB;DP=66;ExcessHet=1.5490;FS=6.116;MQ=59.89;MQRankSum=1.00;NEGATIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=-1.143e+00;SOR=0.203;VQSLOD=-8.041e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,32:66:99:927,0,976
chr1	227171738	rs377335668	G	T	875.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.575e+00;DB;DP=66;ExcessHet=3.0103;FS=12.682;MQ=59.79;MQRankSum=-9.700e-01;NEGATIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.51;SOR=3.215;VQSLOD=-2.566e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,33:66:99:884,0,1015
chr1	227171958	rs7530213	G	C	1909.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801e+00;DB;DP=135;ExcessHet=3.0103;FS=0.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-1.106e+00;SOR=0.790;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,71:135:99:1918,0,1729
chr1	227172290	rs12593	C	T	7799.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.330e-01;DB;DP=181;ExcessHet=1.5490;FS=3.841;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.523;SOR=0.513;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5421,542,0
chr1	227172518	rs1317490	C	T	1994.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=67;ExcessHet=3.9794;FS=0.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.294;SOR=0.799;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,37:67:99:1124,0,824
chr1	227172903	rs2297415	G	A	3135.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.39;DB;DP=57;ExcessHet=1.5490;FS=0.000;MQ=59.93;MQRankSum=-9.570e-01;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=-2.580e-01;SOR=0.665;VQSLOD=1.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1991,171,0
chr1	227172935	rs2297416	C	G	3871.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.340e-01;DB;DP=90;ExcessHet=1.5490;FS=2.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=-1.430e-01;SOR=0.490;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2770,270,0
chr1	227174122	rs41303131	C	G	1310.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=88;ExcessHet=3.0103;FS=0.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-4.430e-01;SOR=0.892;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1319,0,1205
chr1	227174145	rs7552783	T	C	8149.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=0.4576;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=34.39;SOR=2.253;VQSLOD=3.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4194,369,0
chr1	227174210	rs3738725	T	C	13116.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=0.4576;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.23;SOR=1.393;VQSLOD=5.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,230:230:99:6996,689,0
chr1	227174368	.	C	T	1828.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140e+00;DP=161;ExcessHet=3.0103;FS=1.343;MQ=60.00;MQRankSum=0.00;QD=11.36;ReadPosRankSum=0.318;SOR=0.567;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,69:161:99:1837,0,2741
chr1	227181923	rs3795451	C	T	975.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.273e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=0.925;SOR=0.929;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:670,51,0
chr1	227182033	rs2802269	G	A	3678.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.136;DB;DP=52;ExcessHet=3.0103;FS=0.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=-1.480e-01;SOR=0.614;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1455,155,0
chr1	227182179	rs61833999	C	T	151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.88;ReadPosRankSum=-7.100e-02;SOR=0.382;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:160,0,470
chr1	227182575	rs1045247	A	G	7123.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=1.355;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2148,225,0
chr1	227182754	rs2297419	G	A	1138.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DB;DP=27;ExcessHet=3.9794;FS=12.110;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=-9.230e-01;SOR=2.419;VQSLOD=14.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:385,0,373
chr1	227192579	rs2297418	A	C	1952.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=37;ExcessHet=1.5490;FS=2.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.15;ReadPosRankSum=0.733;SOR=1.675;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1431,111,0
chr1	227198434	rs10584341	AGAG	A	285.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=6.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr1	227198775	rs12403978	C	G	236.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DB;DP=19;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.86;SOR=1.426;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:245,0,296
chr1	227198868	rs12404219	C	G	97.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:74:106,0,74
chr1	227204557	rs17600747	T	C	2486.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567e+00;DB;DP=58;ExcessHet=1.5490;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=-1.149e+00;SOR=1.138;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,21:58:99:472,0,1043
chr1	227210820	rs11580229	G	A	1522.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.124;DB;DP=41;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=-2.730e-01;SOR=0.638;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1171,121,0
chr1	227210888	rs11578479	A	T	2411.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=61;ExcessHet=1.5490;FS=1.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.14;ReadPosRankSum=-2.700e-02;SOR=0.548;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1859,183,0
chr1	227213968	rs7535826	G	T	1763.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=2.480;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:832,77,0
chr1	227216662	rs1929861	T	C	4290.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=0.779;SOR=0.686;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,35:71:99:1004,0,1142
chr1	227216775	rs1929860	C	T	5943.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=95;ExcessHet=3.9794;FS=4.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=-3.360e-01;SOR=0.991;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,45:95:99:1142,0,1236
chr1	227218069	rs5781458	C	CAT	3253.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=29;ExcessHet=3.9794;FS=0.793;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=0.757;SOR=0.863;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,10:29:99:363,0,841
chr1	227219314	rs1319103	A	G	616.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=14;ExcessHet=1.5490;FS=4.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=-3.210e-01;SOR=2.726;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:165,0,296
chr1	227221123	rs11582863	G	A	2844.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.790e-01;DB;DP=109;ExcessHet=3.9794;FS=2.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.845;SOR=0.529;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,68:109:99:1669,0,906
chr1	227222515	rs112562427	G	GACAA	6684.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=32.50;SOR=1.625;VQSLOD=6.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1948,135,0
chr1	227239562	rs34111989	G	C	1969.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=96;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=1.07;SOR=0.709;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,41:96:99:944,0,1450
chr1	227288655	rs2104863	G	A	1175.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DB;DP=11;ExcessHet=3.9794;FS=1.351;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.61;ReadPosRankSum=0.951;SOR=0.478;VQSLOD=6.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:226,0,133
chr1	227330488	rs10916094	G	T	548.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-1.437e+00;SOR=1.358;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr1	227330759	rs12139502	A	G	3720.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;DB;DP=69;ExcessHet=3.9794;FS=1.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=1.00;SOR=0.838;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2047,206,0
chr1	227330783	rs58442036	G	C	1582.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=49;ExcessHet=3.9794;FS=9.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-3.300e-01;SOR=1.616;VQSLOD=18.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,26:49:99:742,0,619
chr1	227333055	rs6675599	A	G	466.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=0.547;SOR=1.270;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:224,18,0
chr1	227348473	rs3754418	T	C	609.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.08;ReadPosRankSum=0.589;SOR=2.419;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr1	227381326	rs6696485	C	T	1194.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.03;DB;DP=19;ExcessHet=3.9794;FS=4.349;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=1.24;SOR=2.613;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:63:808,63,0
chr1	227381373	rs3768436	G	T	2287.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.791e+00;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=-4.600e-02;SOR=0.699;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1159,102,0
chr1	227387143	rs3768435	A	G	1050.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.92;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=1.05;SOR=0.489;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:581,42,0
chr1	227387361	rs3768434	A	G	2561.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.531;DB;DP=41;ExcessHet=3.9794;FS=1.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=0.042;SOR=0.941;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,40:41:91:1331,91,0
chr1	227504613	rs4653822	G	C	880.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.508e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=0.723;SOR=0.446;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:293,0,231
chr1	227751602	rs4653853	C	A	714.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.515e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=0.241;SOR=1.863;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr1	227841981	rs72748099	A	G	240.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=2.584;VQSLOD=19.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:257,21,0
chr1	227923081	rs7419238	G	A	35198.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=393;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=0.848;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,393:393:99:11330,1171,0
chr1	228004140	rs10047088	T	C	790.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=3.056;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr1	228005023	rs185359363	A	G	3085.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=228;ExcessHet=3.0103;FS=0.484;MQ=59.94;MQRankSum=1.02;QD=13.53;ReadPosRankSum=0.445;SOR=0.655;VQSLOD=0.887;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:113,115:228:99:3094,0,2709
chr1	228033197	rs9426581	A	G	11939.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=-1.630e-01;SOR=0.669;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5338,477,0
chr1	228108932	rs3795767	A	G	3956.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DB;DP=48;ExcessHet=3.0103;FS=3.287;MQ=60.00;MQRankSum=0.00;QD=29.98;ReadPosRankSum=-1.667e+00;SOR=1.130;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:748,0,631
chr1	228109137	rs35718701	A	G	2694.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=208;ExcessHet=3.0103;FS=3.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.289;SOR=0.479;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,97:208:99:2703,0,2939
chr1	228112121	rs4653889	A	G	9730.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=87;ExcessHet=3.0103;FS=2.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.65;ReadPosRankSum=0.444;SOR=1.691;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2852,261,0
chr1	228112280	rs10916245	T	C	1442.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=5.136;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:590,51,0
chr1	228112776	rs945701	A	G	422.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.02;SOR=4.804;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	228113046	rs8192629	C	T	1789.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940e-01;DB;DP=138;ExcessHet=3.0103;FS=2.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-5.070e-01;SOR=0.901;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,68:138:99:1798,0,1881
chr1	228113163	rs3795768	A	G	12423.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.784;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=1.13;SOR=0.718;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3851,393,0
chr1	228129197	rs631768	T	C	7780.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=1.207;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2748,252,0
chr1	228155147	rs200611444	T	C	183.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=53.99;MQRankSum=-8.120e-01;NEGATIVE_TRAIN_SITE;QD=20.36;ReadPosRankSum=0.282;SOR=1.609;VQSLOD=-1.548e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:55:192,0,55
chr1	228155249	rs72472996	C	A	469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=40;ExcessHet=3.0103;FS=1.267;MQ=50.39;MQRankSum=-1.100e+00;NEGATIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-1.482e+00;SOR=1.015;VQSLOD=-3.327e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:478,0,559
chr1	228155300	rs184568518	C	T	455.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=43;ExcessHet=3.0103;FS=1.174;MQ=46.39;MQRankSum=-2.270e+00;QD=10.59;ReadPosRankSum=1.71;SOR=0.495;VQSLOD=-3.813e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:464,0,512
chr1	228155546	.	A	C	627.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DP=53;ExcessHet=3.0103;FS=5.752;MQ=47.11;MQRankSum=-5.419e+00;QD=11.83;ReadPosRankSum=0.808;SOR=1.371;VQSLOD=-3.505e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:636,0,908
chr1	228156074	rs370609364	C	T	344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=40;ExcessHet=3.0103;FS=1.452;MQ=51.57;MQRankSum=1.48;NEGATIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=-1.730e-01;SOR=1.130;VQSLOD=-3.216e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,13:40:99:353,0,807
chr1	228158920	.	C	T	393.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DP=16;ExcessHet=3.0103;FS=2.171;MQ=57.52;MQRankSum=-1.916e+00;NEGATIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=-5.970e-01;SOR=1.609;VQSLOD=-1.504e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,10:16:99:0|1:228158916_C_CG:402,0,292:228158916
chr1	228158950	rs182817948	T	C	186.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=55.57;MQRankSum=-1.094e+00;NEGATIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-1.529e+00;SOR=1.179;VQSLOD=-2.553e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:195,0,105
chr1	228159125	rs200489028	A	C	54.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=7.782;MQ=56.07;MQRankSum=-2.200e+00;NEGATIVE_TRAIN_SITE;QD=6.04;ReadPosRankSum=0.549;SOR=2.225;VQSLOD=-2.620e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,180
chr1	228159154	.	A	G	307.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DP=14;ExcessHet=3.9794;FS=10.588;MQ=48.62;MQRankSum=-7.370e-01;QD=11.81;ReadPosRankSum=1.45;SOR=3.047;VQSLOD=-4.769e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,2:14:44:44,0,282
chr1	228160112	rs143520683	C	T	94.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=51.45;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=0.842;SOR=1.179;VQSLOD=-2.496e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:34:103,0,34
chr1	228160147	rs146761735	C	T	92.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=52.87;MQRankSum=-1.803e+00;NEGATIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-1.570e-01;SOR=0.582;VQSLOD=-3.082e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:70:101,0,70
chr1	228160173	rs11584326	G	A	353.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=8;ExcessHet=3.9794;FS=1.808;MQ=57.06;MQRankSum=1.80;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=0.854;SOR=0.560;VQSLOD=-1.089e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:69:69,0,106
chr1	228160230	rs373426702	A	T	133.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=54.63;MQRankSum=-1.981e+00;NEGATIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=0.719;SOR=0.922;VQSLOD=-3.438e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:126,0,141
chr1	228160343	rs75227250	C	A	83.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e+00;DB;DP=13;ExcessHet=3.0103;FS=5.332;MQ=37.65;MQRankSum=-2.402e+00;QD=6.40;ReadPosRankSum=1.22;SOR=0.674;VQSLOD=-4.985e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:92:92,0,232
chr1	228160532	rs149175114	T	C	109.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=45.89;MQRankSum=-1.282e+00;QD=18.26;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=-3.665e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:228160532_T_C:117,0,161:228160532
chr1	228160539	rs373917998	C	G	108.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=45.89;MQRankSum=-1.282e+00;QD=18.07;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=-3.670e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:228160532_T_C:117,0,161:228160532
chr1	228160577	rs376343199	A	G	53.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=46.98;MQRankSum=-1.383e+00;QD=13.35;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=-3.552e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,67
chr1	228161413	rs621372	T	C	2649.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=57.00;POSITIVE_TRAIN_SITE;QD=33.97;SOR=1.670;VQSLOD=4.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1148,96,0
chr1	228161467	.	T	C	45.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.390e-01;DP=41;ExcessHet=3.0103;FS=2.112;MQ=59.61;MQRankSum=0.411;NEGATIVE_TRAIN_SITE;QD=1.10;ReadPosRankSum=2.70;SOR=0.273;VQSLOD=-2.003e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,4:41:54:0|1:228161467_T_C:54,0,1584:228161467
chr1	228161468	.	G	C	39.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e+00;DP=41;ExcessHet=3.0103;FS=2.112;MQ=59.61;MQRankSum=0.411;NEGATIVE_TRAIN_SITE;QD=0.96;ReadPosRankSum=2.59;SOR=0.273;VQSLOD=-1.970e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,4:41:48:0|1:228161467_T_C:48,0,1668:228161467
chr1	228161469	.	G	A	39.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728e+00;DP=41;ExcessHet=3.0103;FS=1.961;MQ=59.61;MQRankSum=0.411;NEGATIVE_TRAIN_SITE;QD=0.96;ReadPosRankSum=2.53;SOR=0.330;VQSLOD=-1.909e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,4:41:48:0|1:228161467_T_C:48,0,1668:228161467
chr1	228161479	rs140622693	C	T	643.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=-8.120e-01;SOR=0.784;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,26:44:99:652,0,492
chr1	228161480	.	G	A	39.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740e+00;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.89;ReadPosRankSum=2.80;SOR=0.446;VQSLOD=19.75;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,4:44:48:0|1:228161467_T_C:48,0,1668:228161467
chr1	228161482	.	C	T	39.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527e+00;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.91;ReadPosRankSum=2.53;SOR=0.478;VQSLOD=19.90;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,4:43:48:0|1:228161467_T_C:48,0,1668:228161467
chr1	228161500	rs187285535	A	G	30.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.69;ReadPosRankSum=0.960;SOR=0.602;VQSLOD=20.41;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,4:44:39:0|1:228161467_T_C:39,0,1791:228161467
chr1	228161508	rs373380705	A	G	39.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.550e-01;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.91;ReadPosRankSum=-4.200e-02;SOR=0.557;VQSLOD=20.54;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,4:43:48:0|1:228161467_T_C:48,0,1645:228161467
chr1	228161511	rs79139383	G	A	256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=42;ExcessHet=3.0103;FS=1.302;MQ=60.00;MQRankSum=0.00;QD=6.10;ReadPosRankSum=-2.700e-02;SOR=0.685;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,13:42:99:265,0,707
chr1	228161852	rs77517495	G	C	31.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.52;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:40,0,29
chr1	228161884	rs9662999	A	G	35.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=17.92;SOR=0.693;VQSLOD=12.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	228194775	rs76933265	C	G	3512.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.809e+00;DB;DP=274;ExcessHet=3.0103;FS=2.778;MQ=60.00;MQRankSum=0.00;QD=12.82;ReadPosRankSum=-3.750e-01;SOR=0.541;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,156:274:99:3521,0,2731
chr1	228210179	rs3094911	A	G	283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=1.02;SOR=1.609;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:292,0,358
chr1	228247351	rs752107	T	C	62.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-1.282e+00;SOR=0.307;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:70:70,0,111
chr1	228284991	rs2070960	C	T	2849.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.470e-01;DB;DP=140;ExcessHet=3.9794;FS=0.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-9.150e-01;SOR=0.750;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,63:140:99:1668,0,2099
chr1	228288701	.	T	G	122.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.47;ReadPosRankSum=0.484;SOR=0.941;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:131,0,102
chr1	228289843	rs1128456	C	T	1973.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.451e+00;DB;DP=41;ExcessHet=6.9897;FS=0.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-1.320e-01;SOR=0.856;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:720,0,630
chr1	228289976	rs2295995	A	G	3091.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.16;DB;DP=260;ExcessHet=3.0103;FS=2.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.515;SOR=0.867;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:140,120:260:99:3100,0,3242
chr1	228295919	rs370988261	TA	T	1290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.58;ReadPosRankSum=1.46;SOR=0.738;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,46:95:99:1299,0,1357
chr1	228327999	rs4653908	C	T	1421.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-01;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=1.03;SOR=0.712;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,62:155:99:1430,0,2456
chr1	228333328	rs200265279	G	A	1998.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245e+00;DB;DP=122;ExcessHet=3.0103;FS=2.471;MQ=60.00;MQRankSum=0.00;QD=16.38;ReadPosRankSum=-1.348e+00;SOR=0.459;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,80:122:99:2007,0,986
chr1	228333652	rs11577976	G	A	2574.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=133;ExcessHet=3.9794;FS=4.570;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.243;SOR=1.000;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,67:133:99:1681,0,1572
chr1	228334418	rs3216021	GAT	G	2743.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=33;ExcessHet=3.9794;FS=9.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=1.40;SOR=3.700;VQSLOD=3.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:576,0,786
chr1	228334436	rs55873533	G	A	2216.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=37;ExcessHet=6.9897;FS=3.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=1.22;SOR=1.398;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:541,0,641
chr1	228335125	rs1803695	C	T	2170.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DB;DP=69;ExcessHet=3.9794;FS=2.336;MQ=60.00;MQRankSum=0.00;QD=15.73;ReadPosRankSum=0.210;SOR=0.482;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,34:69:99:897,0,951
chr1	228335959	rs11580599	C	T	678.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=-1.363e+00;SOR=0.844;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,20:31:99:687,0,342
chr1	228346425	rs4653910	G	C	284.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084e+00;DB;DP=12;ExcessHet=3.0103;FS=3.802;MQ=60.00;MQRankSum=0.00;QD=23.70;ReadPosRankSum=-1.165e+00;SOR=1.033;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,11:12:2:293,0,2
chr1	228346936	rs45491398	G	A	77.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.95;SOR=1.179;VQSLOD=19.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr1	228352160	rs4348717	T	C	7847.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=1.054;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2081,204,0
chr1	228362213	rs12141488	C	G	1826.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.06;QD=31.92;SOR=5.058;VQSLOD=2.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:773,66,0
chr1	228362682	rs2298014	G	A	8981.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863e+00;DB;DP=130;ExcessHet=3.9794;FS=1.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=-1.250e-01;SOR=0.539;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,75:130:99:2143,0,1554
chr1	228399799	rs11582369	C	T	1149.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=86;ExcessHet=3.0103;FS=0.842;MQ=60.00;MQRankSum=0.00;QD=13.36;ReadPosRankSum=1.35;SOR=0.522;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1158,0,1085
chr1	228402283	rs1771486	C	G	2199.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.61;DB;DP=30;ExcessHet=3.0103;FS=1.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.43;ReadPosRankSum=-2.910e-01;SOR=1.463;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:535,0,452
chr1	228402508	rs2776853	C	T	8183.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=94;ExcessHet=3.0103;FS=2.630;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=0.671;SOR=1.056;VQSLOD=6.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3383,282,0
chr1	228404198	rs61501937	G	A	440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e+00;DB;DP=43;ExcessHet=3.0103;FS=1.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-4.630e-01;SOR=1.022;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:449,0,650
chr1	228404668	rs3795777	T	C	2339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.07;SOR=3.187;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:647,54,0
chr1	228405118	rs5781507	G	GA	950.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=1.47;SOR=5.784;VQSLOD=0.866;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:253,27,0
chr1	228407010	rs1757158	C	T	17311.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.503;DB;DP=208;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=-9.820e-01;SOR=0.743;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,208:208:99:6457,624,0
chr1	228407260	rs1771484	G	A	7217.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=88;ExcessHet=3.0103;FS=5.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=0.167;SOR=1.224;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3019,263,0
chr1	228412106	rs1771482	T	C	8230.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=1.544;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2284,216,0
chr1	228412227	rs1771480	T	C	17310.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.600e-02;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.90;ReadPosRankSum=-6.460e-01;SOR=0.393;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,117:118:99:1|1:228412227_T_C:5183,273,0:228412227
chr1	228412228	rs1757153	G	A	13789.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.260e-01;DB;DP=118;ExcessHet=3.0103;FS=7.221;MQ=60.00;MQRankSum=0.00;QD=34.05;ReadPosRankSum=0.375;SOR=0.340;VQSLOD=18.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,117:118:99:1|1:228412227_T_C:5183,273,0:228412227
chr1	228412308	rs1757152	G	A	16250.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.488;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.95;ReadPosRankSum=0.726;SOR=0.589;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,147:148:99:5072,408,0
chr1	228412692	rs79692312	C	T	280.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.965;SOR=0.818;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:289,0,255
chr1	228430697	rs1771456	A	G	2996.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=5.283;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1028,78,0
chr1	228431095	rs1771455	A	G	10562.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=1.160;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,104:104:99:1|1:228431095_A_G:3694,312,0:228431095
chr1	228431117	.	G	A	1130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DP=84;ExcessHet=3.0103;FS=5.831;MQ=60.00;MQRankSum=0.00;QD=13.46;ReadPosRankSum=-3.620e-01;SOR=1.432;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,42:84:99:0|1:228431095_A_G:1139,0,1017:228431095
chr1	228431235	rs11584385	G	A	1794.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.507e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.49;ReadPosRankSum=0.247;SOR=0.739;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:785,66,0
chr1	228431930	rs10916293	C	T	22314.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=237;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.12;SOR=1.216;VQSLOD=5.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,237:237:99:7053,709,0
chr1	228432199	rs368607358	G	A	1291.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=110;ExcessHet=3.0103;FS=1.572;MQ=60.00;MQRankSum=0.00;QD=11.74;ReadPosRankSum=-1.600e-01;SOR=0.510;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,48:110:99:1300,0,1686
chr1	228432860	rs1757130	T	C	1558.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.60;POSITIVE_TRAIN_SITE;QD=25.90;SOR=7.428;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:347,27,0
chr1	228432987	rs1757129	G	C	6634.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.421;DB;DP=76;ExcessHet=3.0103;FS=2.094;MQ=59.94;MQRankSum=-4.210e-01;QD=25.13;ReadPosRankSum=1.88;SOR=0.900;VQSLOD=0.288;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2476,228,0
chr1	228433217	rs2487384	A	G	12760.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=1.014;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3851,363,0
chr1	228433491	rs1888681	T	C	1808.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.20;SOR=7.523;VQSLOD=24.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:572,39,0
chr1	228433556	rs1888680	A	T	520.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=5.421;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:215,18,0
chr1	228434395	rs7517088	T	C	16742.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.347e+00;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.45;ReadPosRankSum=1.08;SOR=0.457;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4717,441,0
chr1	228434467	rs7517108	T	C	11535.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=1.317;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3633,357,0
chr1	228434602	rs1411915	A	T	2693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.10;SOR=4.434;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:79:835,79,0
chr1	228437603	rs6426494	T	C	27406.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.68;SOR=1.396;VQSLOD=4.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,246:246:99:7814,738,0
chr1	228444297	rs7532141	T	G	9380.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=142;ExcessHet=3.9794;FS=1.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=0.012;SOR=0.578;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,73:142:99:1976,0,1724
chr1	228444318	rs7532144	T	G	15388.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=1.201;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5175,489,0
chr1	228444565	rs7532342	T	A	16873.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.59;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.36;ReadPosRankSum=0.997;SOR=0.167;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5810,558,0
chr1	228444741	rs3795780	C	T	3833.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=4.037;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:89:1024,89,0
chr1	228444808	rs60268722	A	AG	1303.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.41;SOR=7.276;VQSLOD=7.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:392,33,0
chr1	228446993	rs11585491	A	G	399.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.172e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-2.670e-01;SOR=0.627;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:408,0,486
chr1	228447463	rs147633098	G	A	2045.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872e+00;DB;DP=151;ExcessHet=3.0103;FS=0.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.298;SOR=0.623;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,77:151:99:2054,0,2124
chr1	228447513	rs7525075	T	G	9558.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=75;ExcessHet=3.0103;FS=1.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=0.928;SOR=0.928;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,75:75:99:1|1:228447513_T_G:3285,226,0:228447513
chr1	228447519	rs7525078	T	A	9075.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.400e-01;DB;DP=69;ExcessHet=3.0103;FS=0.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=0.834;SOR=0.850;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,69:69:99:1|1:228447513_T_G:3187,217,0:228447513
chr1	228451562	rs4653545	C	G	2872.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.976e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=1.18;SOR=2.517;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1190,102,0
chr1	228455937	rs489926	T	C	2062.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.800e-02;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=-1.311e+00;SOR=4.693;VQSLOD=13.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:789,57,0
chr1	228456147	rs878388	T	C	16641.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=0.927;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5499,522,0
chr1	228456738	rs61825279	A	C	1791.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=0.410;SOR=2.387;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:186,0,209
chr1	228461129	rs1188724	A	G	11539.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.88;SOR=0.912;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3456,333,0
chr1	228461408	rs11398292	A	AG	7769.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.93;SOR=1.068;VQSLOD=6.03;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2770,250,0
chr1	228461757	rs474735	G	A	5276.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=147;ExcessHet=3.9794;FS=2.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.97;SOR=0.565;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,79:147:99:2175,0,1780
chr1	228464100	rs936884	G	A	807.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=17;ExcessHet=3.9794;FS=1.179;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-1.610e-01;SOR=0.469;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:243,0,292
chr1	228464248	rs1188721	T	G	13220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=1.043;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4073,399,0
chr1	228464276	rs1188722	T	C	15020.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=0.851;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4648,447,0
chr1	228464842	rs936885	C	G	18151.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=0.813;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,188:188:99:5973,563,0
chr1	228465346	rs493945	A	G	11787.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.225;DB;DP=166;ExcessHet=3.0103;FS=1.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=1.16;SOR=0.718;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,165:166:99:5162,457,0
chr1	228465370	rs867599	T	G	14803.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.70;SOR=0.722;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5463,483,0
chr1	228465674	rs2307995	C	CAAG	2409.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.160e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.33;ReadPosRankSum=-3.090e-01;SOR=1.416;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1080,72,0
chr1	228466750	rs3795782	T	C	6533.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.308e+00;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=1.16;SOR=0.744;VQSLOD=6.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2141,174,0
chr1	228466862	rs3820627	C	T	974.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.439e+00;DB;DP=98;ExcessHet=3.0103;FS=3.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=1.95;SOR=0.385;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,47:98:99:983,0,1528
chr1	228467333	rs11581037	C	G	634.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=28;ExcessHet=3.0103;FS=9.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=1.18;SOR=0.473;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,18:28:99:643,0,286
chr1	228468566	rs4653934	A	G	1014.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.870e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.74;ReadPosRankSum=1.61;SOR=3.056;VQSLOD=17.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr1	228469312	rs10626823	A	AGC	578.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.70;SOR=0.976;VQSLOD=5.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	228469343	rs11405164	G	GA	628	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.80;SOR=2.049;VQSLOD=5.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:318,24,0
chr1	228471046	rs41303079	C	T	3139.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=41;ExcessHet=3.9794;FS=0.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=0.835;SOR=0.627;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:629,0,620
chr1	228471379	rs56168609	G	C	16574.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.934e+00;DB;DP=219;ExcessHet=3.0103;FS=0.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=-1.359e+00;SOR=0.803;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,219:219:99:6839,657,0
chr1	228473600	rs1150907	A	G	878.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-3.680e-01;SOR=0.338;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:342,0,278
chr1	228474817	rs4653935	G	A	453.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.089;SOR=0.776;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:266,0,204
chr1	228474840	rs4653936	G	C	301.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=10;ExcessHet=3.9794;FS=1.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.159;SOR=1.071;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:147,0,185
chr1	228480282	rs1150908	A	G	18640.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.25;SOR=0.922;VQSLOD=4.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5799,558,0
chr1	228480962	.	G	A	1268.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978e+00;DP=110;ExcessHet=3.0103;FS=1.596;MQ=60.00;MQRankSum=0.00;QD=11.53;ReadPosRankSum=1.06;SOR=0.526;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,49:110:99:0|1:228480962_G_A:1277,0,1757:228480962
chr1	228480964	rs10158357	A	G	12076.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.82;SOR=1.473;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,110:110:99:1|1:228480962_G_A:4246,330,0:228480962
chr1	228482010	rs449133	C	T	11444.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=305;ExcessHet=6.9897;FS=0.521;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-6.730e-01;SOR=0.637;VQSLOD=6.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:154,151:305:99:0|1:228482010_C_T:3782,0,5897:228482010
chr1	228482028	rs4653547	G	C	9144.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922e+00;DB;DP=302;ExcessHet=3.9794;FS=1.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.914;SOR=0.676;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:148,154:302:99:1|0:228482010_C_T:4059,0,5601:228482010
chr1	228482285	rs1150909	T	C	10647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=1.765;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2729,210,0
chr1	228486404	rs56021350	C	T	4266.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=149;ExcessHet=3.9794;FS=1.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.73;SOR=0.783;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,70:149:99:1559,0,1962
chr1	228486784	rs287613	G	A	2430.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.947;DB;DP=25;ExcessHet=3.0103;FS=2.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.76;ReadPosRankSum=1.09;SOR=0.437;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:996,75,0
chr1	228491207	rs536515	C	A	1099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200e-01;DB;DP=23;ExcessHet=6.9897;FS=2.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-6.200e-02;SOR=0.993;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,7:23:99:124,0,523
chr1	228491633	rs11584418	G	A	1910.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=175;ExcessHet=3.0103;FS=7.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-7.200e-01;SOR=1.233;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,81:175:99:1919,0,2202
chr1	228492044	rs1150910	G	A	7905.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.430e-01;DB;DP=202;ExcessHet=6.9897;FS=1.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.288;SOR=0.800;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,101:202:99:2631,0,2442
chr1	228494357	rs3795795	C	T	8799.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.14;DB;DP=246;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=2.56;SOR=0.710;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,101:246:99:3583,0,5148
chr1	228494382	rs1150911	T	C,G	20643.67	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.23;SOR=1.524;VQSLOD=19.63;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,84,109:193:99:6680,3382,4264,3540,0,3214
chr1	228494438	rs3795797	C	T	3722.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.85;DB;DP=110;ExcessHet=3.9794;FS=4.688;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-5.900e-02;SOR=1.013;VQSLOD=6.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,45:110:99:1350,0,1857
chr1	228494696	rs4653939	G	A	4967.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DB;DP=97;ExcessHet=6.9897;FS=2.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-2.970e-01;SOR=0.703;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1211,0,1241
chr1	228494790	rs435776	G	A	5146.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=129;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-5.110e-01;SOR=0.721;VQSLOD=6.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,63:129:99:1643,0,1627
chr1	228495664	rs419338	T	A	2744.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=5.728;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:843,71,0
chr1	228495696	rs419173	T	C	3894.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.48;SOR=4.283;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1187,99,0
chr1	228495983	rs56306215	G	A	1921.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-02;DB;DP=138;ExcessHet=3.0103;FS=3.069;MQ=60.00;MQRankSum=0.00;QD=13.92;ReadPosRankSum=-1.960e-01;SOR=0.474;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,71:138:99:1930,0,1726
chr1	228496014	rs876180	G	A	3559.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.370e-01;DB;DP=124;ExcessHet=3.9794;FS=3.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.708;SOR=0.920;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,59:124:99:1553,0,1724
chr1	228497053	rs379620	A	G	20616.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=1.181;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:6352,554,0
chr1	228497470	rs378090	A	G	1495.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=7.223;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:539,39,0
chr1	228503677	rs1150912	A	G	23062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=0.898;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,253:253:99:7380,759,0
chr1	228504027	rs3119591	C	T	352.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.65;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-6.000e-03;SOR=1.270;VQSLOD=4.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:54:54,0,234
chr1	228504239	rs3119592	G	T	936.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=16;ExcessHet=6.9897;FS=2.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.123;SOR=1.162;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:172,0,297
chr1	228504472	rs1188732	T	C	12933.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.39;SOR=0.860;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4659,450,0
chr1	228504591	rs61825301	C	A	3427.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=146;ExcessHet=3.9794;FS=2.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.238;SOR=0.556;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,79:146:99:1969,0,1444
chr1	228504669	rs61825302	G	A	1952.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;DB;DP=70;ExcessHet=3.9794;FS=1.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.588;SOR=0.494;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,41:70:99:1058,0,1085
chr1	228504670	rs11810627	C	T	1825.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=69;ExcessHet=6.9897;FS=2.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-1.160e-01;SOR=0.936;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,28:69:99:671,0,1627
chr1	228504701	rs111792077	G	GCTCC	4614.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=2.723;VQSLOD=5.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1710,114,0
chr1	228504959	rs1188730	C	T	495.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=2.13;SOR=0.495;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:109,0,27
chr1	228505204	rs4653942	G	A	3868.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350e-01;DB;DP=110;ExcessHet=6.9897;FS=0.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.129;SOR=0.746;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,56:110:99:1289,0,1333
chr1	228505668	rs1188729	C	G	8853.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.110e-01;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.99;ReadPosRankSum=0.181;SOR=0.620;VQSLOD=6.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2940,217,0
chr1	228505699	rs1188728	T	C	10369.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330e-01;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.57;ReadPosRankSum=1.67;SOR=0.550;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,101:102:99:3358,267,0
chr1	228505739	rs3795801	G	A	3003.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DB;DP=144;ExcessHet=3.9794;FS=0.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.906;SOR=0.765;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,62:144:99:1448,0,2005
chr1	228509427	rs373610	A	G	23347.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=232;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.56;ReadPosRankSum=-4.910e-01;SOR=0.430;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,230:232:99:7275,645,0
chr1	228510740	rs1150914	T	G	154.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=0.566;SOR=0.892;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:162,0,142
chr1	228520382	rs429335	G	A	1253.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975e+00;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=-4.940e-01;SOR=0.642;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:335,0,532
chr1	228520763	rs384553	G	A	2317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=31;ExcessHet=6.9897;FS=5.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=1.13;SOR=1.315;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:591,0,485
chr1	228520880	rs416564	C	T	2047.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=55;ExcessHet=6.9897;FS=5.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.099;SOR=0.331;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,20:55:99:644,0,998
chr1	228520973	rs369909	C	G	4308.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324e+00;DB;DP=147;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=0.325;SOR=0.655;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,63:147:99:1349,0,2107
chr1	228522029	rs57891072	TA	T	601.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=14;ExcessHet=3.9794;FS=1.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.975;SOR=1.306;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:160,0,321
chr1	228522047	rs520552	A	T	440.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.510e-01;DB;DP=16;ExcessHet=6.9897;FS=1.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-5.100e-02;SOR=1.414;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:173,0,229
chr1	228522483	rs11581192	C	T	421.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e-02;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=1.14;SOR=0.653;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,19:54:99:430,0,953
chr1	228523442	rs1684868	T	C	3993.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-01;DB;DP=63;ExcessHet=3.9794;FS=1.995;MQ=60.00;MQRankSum=0.00;QD=23.77;ReadPosRankSum=0.770;SOR=0.549;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,32:63:99:0|1:228523442_T_C:1261,0,1202:228523442
chr1	228523447	rs10799473	T	C	6814.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.35;SOR=1.338;VQSLOD=18.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2538,198,0
chr1	228523448	rs1757161	G	A	2803.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DB;DP=68;ExcessHet=6.9897;FS=1.227;MQ=60.00;MQRankSum=0.00;QD=16.11;ReadPosRankSum=0.789;SOR=0.569;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,34:68:99:0|1:228523442_T_C:1288,0,1270:228523442
chr1	228523618	rs1757160	G	A	2720.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.760e-01;DB;DP=44;ExcessHet=3.9794;FS=17.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=0.493;SOR=0.568;VQSLOD=12.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,22:44:99:633,0,691
chr1	228524642	rs56063628	T	C	846.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=72;ExcessHet=3.0103;FS=0.959;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-6.880e-01;SOR=0.551;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:855,0,947
chr1	228524919	rs3795807	G	A	6870.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.880e-01;DB;DP=228;ExcessHet=6.9897;FS=4.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.037;SOR=0.997;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,111:228:99:2805,0,2910
chr1	228524961	rs3795808	C	A	7272.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DB;DP=230;ExcessHet=6.9897;FS=1.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-3.650e-01;SOR=0.612;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,109:230:99:2596,0,2958
chr1	228525627	rs1757127	C	A	4139.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660e-01;DB;DP=115;ExcessHet=6.9897;FS=1.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.859;SOR=0.819;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,48:115:99:1136,0,1643
chr1	228525898	rs1188717	C	G	7151.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DB;DP=104;ExcessHet=3.9794;FS=3.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=1.10;SOR=0.789;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,53:104:99:1588,0,1437
chr1	228526272	rs419808	G	A	753.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.440e-01;DB;DP=14;ExcessHet=6.9897;FS=1.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=-5.200e-02;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:238,0,244
chr1	228526486	rs58480216	G	A	2471.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=62;ExcessHet=6.9897;FS=2.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=1.78;SOR=0.935;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,34:62:99:890,0,652
chr1	228526665	rs505629	T	C	6091.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.980e-01;DB;DP=117;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.843;SOR=0.684;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,55:117:99:1232,0,1526
chr1	228526742	rs71180791	C	CCACA,CCACACA	1451.63	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.71;MQRankSum=-1.570e-01;QD=33.47;ReadPosRankSum=0.157;SOR=4.892;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,3,4:8:44:274,68,86,44,0,80
chr1	228527844	rs11588701	T	G	585.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DB;DP=40;ExcessHet=3.0103;FS=1.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.555;SOR=0.334;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:594,0,624
chr1	228528412	rs1150916	G	A	10225.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=320;ExcessHet=6.9897;FS=1.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.784;SOR=0.647;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:164,156:320:99:3913,0,4121
chr1	228528563	rs1188710	C	G	11872.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=251;ExcessHet=3.9794;FS=0.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=-8.360e-01;SOR=0.728;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,133:251:99:3400,0,2912
chr1	228529429	rs141828109	A	AGACGGCTCAGCCAGCCTGTGGCATGG	3202.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DB;DP=27;ExcessHet=3.9794;FS=5.189;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=-1.166e+00;SOR=3.126;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,14:27:99:541,0,2601
chr1	228537942	rs729258	T	C	918.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.67;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-2.450e-01;SOR=0.693;VQSLOD=5.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:248,0,298
chr1	228538829	rs11581897	C	T	244.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=10;ExcessHet=3.9794;FS=1.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.493;SOR=1.214;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:51:51,0,272
chr1	228539300	rs3795812	G	A	690.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.078;SOR=0.646;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,3:11:90:0|1:228539300_G_A:90,0,479:228539300
chr1	228539332	rs3795813	A	G	37.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.66;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=22.58;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:46:0|1:228539300_G_A:46,0,404:228539300
chr1	228540542	rs6695278	G	A	234.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=1.42;SOR=1.270;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:106,0,29
chr1	228550429	rs11585049	C	T	2261.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.555e+00;DB;DP=139;ExcessHet=3.0103;FS=1.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=1.06;SOR=0.941;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,78:139:99:2270,0,1926
chr1	228555270	rs115063573	C	T	96.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:105,0,67
chr1	228559994	rs500049	C	T	4758.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=200;ExcessHet=3.9794;FS=0.377;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-5.890e-01;SOR=0.656;VQSLOD=6.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,107:200:99:2631,0,2364
chr1	228560139	rs498382	A	G	9867.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.27;SOR=0.701;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2888,235,0
chr1	228560700	rs512253	T	C	7797.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719e+00;DB;DP=156;ExcessHet=6.9897;FS=1.741;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.394;SOR=0.768;VQSLOD=6.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,87:156:99:2217,0,1756
chr1	228560990	rs579897	G	A	647.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DB;DP=15;ExcessHet=6.9897;FS=2.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-5.160e-01;SOR=0.146;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:122,0,412
chr1	228561391	rs115303219	A	C	767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=2.62;SOR=0.859;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:776,0,551
chr1	228582335	rs56895565	C	T	138.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=1.25;SOR=0.368;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:147,0,180
chr1	228582643	rs34297060	C	T	2765.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=233;ExcessHet=3.0103;FS=4.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.467;SOR=0.985;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,104:233:99:2774,0,3466
chr1	228588680	rs11555960	A	C	2882.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=99;ExcessHet=3.9794;FS=7.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=-7.710e-01;SOR=0.350;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,58:99:99:1639,0,1184
chr1	228597022	rs113721058	G	A	1145.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;DB;DP=96;ExcessHet=3.0103;FS=2.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.650;SOR=1.056;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,42:96:99:1154,0,1410
chr1	228601422	rs3738688	C	T	447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-1.201e+00;SOR=0.368;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:456,0,443
chr1	228601638	rs472594	T	C	5062.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=139;ExcessHet=6.9897;FS=2.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.011;SOR=0.841;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,69:139:99:1747,0,1736
chr1	228602513	rs2291998	C	T	1653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760e-01;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.101;SOR=0.661;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,64:127:99:1662,0,1632
chr1	228602564	rs60640636	C	T	1868.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.950e-01;DB;DP=135;ExcessHet=3.0103;FS=0.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-1.500e-01;SOR=0.598;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,72:135:99:1877,0,1658
chr1	228612417	rs4653958	T	C	205.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=-8.160e-01;SOR=1.085;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:214,0,141
chr1	228612444	rs1188473	A	G	1566.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.522e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=-5.700e-02;SOR=2.644;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,14:15:4:446,4,0
chr1	228612838	rs2230656	G	T	14881.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.902e+00;DB;DP=169;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=-9.400e-02;SOR=0.728;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5915,506,0
chr1	228613052	rs1188474	T	C	11140.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=1.09;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=-1.432e+00;SOR=0.711;VQSLOD=1.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4444,440,0
chr1	228645063	rs10916317	A	G	9226.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.96;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.96;ReadPosRankSum=0.612;SOR=0.647;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3747,324,0
chr1	228646263	rs115835359	G	A	3977.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.151e+00;DB;DP=333;ExcessHet=3.0103;FS=3.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-2.720e-01;SOR=0.542;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:167,166:333:99:3986,0,4187
chr1	228646356	rs150880595	C	CGTGTGTGT	2284.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110e-01;DB;DP=31;ExcessHet=6.9897;FS=3.321;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=-3.250e-01;SOR=1.863;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,11:31:99:597,0,829
chr1	228649728	rs16841344	T	A	869.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135e+00;DB;DP=89;ExcessHet=3.0103;FS=0.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.467;SOR=0.559;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,39:89:99:878,0,1275
chr1	228681749	rs3795817	C	T	2354.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.29;DB;DP=25;ExcessHet=3.9794;FS=2.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=-1.500e-01;SOR=0.167;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:358,0,451
chr1	228699477	rs6665115	T	C	21336.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=314;ExcessHet=3.9794;FS=1.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=-7.730e-01;SOR=0.820;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:159,155:314:99:4006,0,3865
chr1	229052296	rs13376141	G	A	474.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=1.37;SOR=0.622;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	229178036	.	C	T	70.50	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.27;SOR=1.609;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:6:1|1:229178036_C_T:84,6,0:229178036
chr1	229178058	rs4654640	C	T	534.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.000e-03;DB;DP=3;ExcessHet=3.9794;FS=5.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=-1.500e-02;SOR=2.368;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:229178036_C_T:125,9,0:229178036
chr1	229385256	rs6695100	G	A	474.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=3.9794;FS=3.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=2.19;SOR=0.141;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:212,0,194
chr1	229385407	rs9435867	G	C	2137.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.114e+00;DB;DP=159;ExcessHet=3.0103;FS=4.800;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.17;SOR=0.415;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,93:159:99:2146,0,1656
chr1	229385669	rs140311590	TTC	T	335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-8.500e-01;SOR=0.602;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,10:24:99:344,0,523
chr1	229385897	rs71561727	C	CGT	283.65	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.26;ReadPosRankSum=-7.320e-01;SOR=0.976;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:18:201,18,0
chr1	229407233	rs7519709	G	C	1271.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=1.17;SOR=1.002;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,27:29:38:884,38,0
chr1	229422193	rs237764	T	C	2944.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=38;ExcessHet=3.9794;FS=3.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-2.320e-01;SOR=0.488;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1298,113,0
chr1	229434998	rs237778	A	G	68.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=2.303;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	229438828	rs237787	G	A	2115.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=31;ExcessHet=3.9794;FS=1.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=0.905;SOR=0.335;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1219,93,0
chr1	229461024	rs2282083	C	T	5744.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.43;DB;DP=127;ExcessHet=1.5490;FS=0.477;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=-5.460e-01;SOR=0.639;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3765,381,0
chr1	229476077	.	T	C	464.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460e-01;DP=41;ExcessHet=3.0103;FS=1.242;MQ=60.00;MQRankSum=0.00;QD=11.32;ReadPosRankSum=-1.071e+00;SOR=0.466;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:473,0,543
chr1	229568231	rs527621	T	G	2556.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.92;SOR=6.869;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:623,45,0
chr1	229580476	rs484940	T	C	701.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=4.407;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr1	229619516	rs568916	T	C	219.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=-1.282e+00;SOR=2.584;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	229663064	rs113712941	GAGGAA	G	8131.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.75;SOR=0.738;VQSLOD=4.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2071,139,0
chr1	229676617	rs56373110	T	C	395.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=1.45;SOR=0.892;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:137,0,296
chr1	229730452	rs2295625	G	A	6928.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.808e+00;DB;DP=177;ExcessHet=1.5490;FS=2.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.41;ReadPosRankSum=1.37;SOR=0.516;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5285,531,0
chr1	229738170	rs3753886	T	G	4409.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.161e+00;DB;DP=96;ExcessHet=1.5490;FS=0.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-2.180e-01;SOR=0.739;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2967,287,0
chr1	229738236	rs4925500	G	A	9599.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.577;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-6.890e-01;SOR=0.703;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3330,320,0
chr1	229746019	rs2273573	C	T	2214.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=44;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=-1.579e+00;SOR=0.700;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1374,132,0
chr1	229750343	rs2273574	T	G	5544.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.351;DB;DP=128;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-1.029e+00;SOR=0.766;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4117,384,0
chr1	229768297	rs1473719	C	T	1921.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.580e+00;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=0.494;SOR=0.626;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1265,108,0
chr1	229772693	rs3811473	T	G	4761.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;DB;DP=102;ExcessHet=1.5490;FS=1.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=1.36;SOR=0.552;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3588,306,0
chr1	229781532	rs881694	T	G	995.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.12;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=0.379;SOR=1.329;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:664,48,0
chr1	229781744	rs2274994	T	C	6752.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.23;DB;DP=148;ExcessHet=1.5490;FS=2.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=1.04;SOR=0.524;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,147:148:99:4455,401,0
chr1	229783236	rs6587349	T	C	10117.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.67;SOR=1.487;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,86:86:99:1|1:229783236_T_C:3858,259,0:229783236
chr1	229783240	rs2274995	T	C	5121.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=85;ExcessHet=1.5490;FS=1.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.81;ReadPosRankSum=0.437;SOR=0.535;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,85:85:99:1|1:229783236_T_C:3882,262,0:229783236
chr1	229790048	rs7521953	A	G	4516.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.48;DB;DP=97;ExcessHet=1.5490;FS=4.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=-5.440e-01;SOR=0.976;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3152,290,0
chr1	229795070	rs1048306	T	G	2670.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.460e-01;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=59.75;MQRankSum=-9.240e-01;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=-1.668e+00;SOR=0.812;VQSLOD=1.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1946,183,0
chr1	230398102	rs632557	A	G	139.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=3.258;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr1	230415025	rs6698963	A	G	6648.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=184;ExcessHet=6.9897;FS=1.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-2.530e-01;SOR=0.610;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,86:184:99:2158,0,2168
chr1	230415293	rs2273967	C	T	590.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=1.37;SOR=0.278;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:363,0,109
chr1	230415501	rs372552383	C	T	285.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.38;ReadPosRankSum=1.88;SOR=1.445;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:294,0,122
chr1	230451935	rs144363709	C	CAT	8710.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=27.57;SOR=1.573;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2130,144,0
chr1	230451978	rs11122492	G	A	9108.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.72;SOR=0.865;VQSLOD=17.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2145,216,0
chr1	230452233	rs11122493	C	T	626.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.32;ReadPosRankSum=0.105;SOR=1.708;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	230459433	rs35048134	GC	G	2203.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.120e-01;DB;DP=35;ExcessHet=3.9794;FS=2.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.963;SOR=0.357;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1082,105,0
chr1	230461423	rs10735524	C	G	510.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.64;SOR=2.985;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
chr1	230473103	rs10864744	A	C	4353.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.83;DB;DP=61;ExcessHet=3.9794;FS=2.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=1.10;SOR=0.460;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2369,183,0
chr1	230497814	rs828477	A	G	1164.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.689e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.48;ReadPosRankSum=-2.017e+00;SOR=3.442;VQSLOD=17.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:637,51,0
chr1	230497828	rs2003356	A	G	1878.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.870e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.03;ReadPosRankSum=-1.408e+00;SOR=3.702;VQSLOD=14.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:230497828_A_G:855,57,0:230497828
chr1	230497829	rs882067	C	A	1878.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.690;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.65;ReadPosRankSum=-8.080e-01;SOR=3.442;VQSLOD=16.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:230497828_A_G:855,57,0:230497828
chr1	230497844	rs828478	C	G	2241.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.76;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.09;ReadPosRankSum=0.933;SOR=3.223;VQSLOD=17.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1001,69,0
chr1	230497940	rs828479	G	T	9040.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=116;ExcessHet=3.0103;FS=0.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=0.926;SOR=0.782;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,115:116:99:3771,337,0
chr1	230498232	rs2820384	C	T	3508.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.201e+00;DB;DP=35;ExcessHet=3.0103;FS=2.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=1.14;SOR=1.727;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1443,105,0
chr1	230503576	rs112511460	GCATTCTCGCGTCCAATTT	G	693.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.29;SOR=2.093;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	230503684	rs2632571	C	T	3001.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=34;ExcessHet=3.0103;FS=2.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.80;ReadPosRankSum=-1.018e+00;SOR=0.336;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1155,102,0
chr1	230504070	rs2820377	C	G	767.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=0.980;SOR=0.643;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:328,24,0
chr1	230513128	rs828463	G	A	3580.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.49;DB;DP=42;ExcessHet=3.0103;FS=2.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.11;ReadPosRankSum=-8.390e-01;SOR=1.194;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1428,126,0
chr1	230561389	rs113202442	C	A	113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=16;ExcessHet=3.0103;FS=2.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=1.52;SOR=0.269;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:99:122,0,317
chr1	230561627	rs138134082	G	C	201.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=26;ExcessHet=3.0103;FS=1.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.74;ReadPosRankSum=1.00;SOR=0.399;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:210,0,416
chr1	230561700	.	G	GC	528.04	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.06;SOR=5.784;VQSLOD=5.46;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
chr1	230778243	rs11361885	AC	A	2364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=65;ExcessHet=6.9897;FS=2.236;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.928;SOR=0.914;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,30:65:99:761,0,917
chr1	230778491	rs4846864	G	C	9643.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=2.596;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2969,275,0
chr1	230795177	rs1359866	T	C	3234.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=2.808;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1013,95,0
chr1	230796375	rs3736982	A	C	1739.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362e+00;DB;DP=31;ExcessHet=6.9897;FS=6.226;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.171;SOR=1.706;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:396,0,552
chr1	230798808	rs2296802	G	A	874.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.154;SOR=0.656;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,18:27:99:445,0,164
chr1	230814431	rs76259161	A	G	2241.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DB;DP=71;ExcessHet=3.9794;FS=2.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.710;SOR=0.503;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,34:71:99:911,0,1026
chr1	230819155	rs35756888	TA	T	392.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-1.500e-01;SOR=1.027;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:18:10:156,0,10
chr1	230819295	rs5781596	ATTC	A	7479.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=74;ExcessHet=3.0103;FS=6.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.07;ReadPosRankSum=-6.140e-01;SOR=1.271;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,34:74:99:1307,0,1698
chr1	230819479	rs5781597	G	GT	1874.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.012e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=0.040;SOR=0.724;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,19:32:99:404,0,217
chr1	230820605	rs2296797	G	T	1173.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.85;ReadPosRankSum=0.674;SOR=3.258;VQSLOD=19.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,74
chr1	230825427	rs11122572	T	G	211.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.23;SOR=3.611;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:230825427_T_G:135,9,0:230825427
chr1	230825447	rs10864768	T	C	251.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.51;SOR=3.912;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:230825427_T_G:175,12,0:230825427
chr1	230828873	rs3789662	A	G	729.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.17;ReadPosRankSum=0.00;SOR=3.912;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,70
chr1	230829139	rs1051038	A	G	4298.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437e+00;DB;DP=52;ExcessHet=3.0103;FS=4.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.70;ReadPosRankSum=0.101;SOR=0.762;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:687,0,696
chr1	230840096	rs1926723	T	C	4067.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.830e-01;DB;DP=62;ExcessHet=3.9794;FS=5.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=1.59;SOR=1.135;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:971,0,744
chr1	230840197	rs1926722	C	A	902.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=0.027;SOR=0.919;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:121,0,273
chr1	230841509	rs2478523	A	G	412.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=9;ExcessHet=3.9794;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.309;SOR=2.461;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:152,0,143
chr1	230841687	rs7080	T	C	13050.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=1.165;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4364,438,0
chr1	230845794	rs699	A	G	20788.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=205;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.287;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,205:205:99:6139,614,0
chr1	230846679	rs11122576	T	C	4164.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=89;ExcessHet=3.9794;FS=0.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-4.350e-01;SOR=0.643;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,34:89:99:876,0,1432
chr1	230883466	rs12143120	C	T	6079.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=134;ExcessHet=1.5490;FS=0.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=1.37;SOR=0.767;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,133:134:99:4016,366,0
chr1	230883484	rs6690251	T	C	5613.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.84;DB;DP=119;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=-1.100e+00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.420;SOR=0.674;VQSLOD=1.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3810,357,0
chr1	230883499	rs6690254	T	C	4466.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.00;DB;DP=90;ExcessHet=1.5490;FS=2.261;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=0.325;SOR=0.519;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2959,270,0
chr1	230883656	rs4078405	C	G	242.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.21;ReadPosRankSum=0.503;SOR=1.022;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	230891248	rs2493145	C	T	440.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=17;ExcessHet=3.9794;FS=2.370;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.258;SOR=0.238;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:189,0,338
chr1	230895340	rs28359608	C	A	188.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302e+00;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.59;ReadPosRankSum=1.10;SOR=0.723;VQSLOD=22.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,11:41:99:197,0,848
chr1	230898231	rs2282318	T	A	985.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=26;ExcessHet=3.9794;FS=1.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=0.407;SOR=1.402;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:465,0,370
chr1	230898494	rs2282319	C	T	3505.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=106;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.476;SOR=0.695;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,42:106:99:981,0,1546
chr1	230898615	rs3215985	G	GA	631.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=31;ExcessHet=3.9794;FS=7.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.16;SOR=2.373;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,14:31:99:341,0,437
chr1	230903234	rs11122590	A	G	458.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.196e+00;DB;DP=12;ExcessHet=1.5490;FS=3.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=-1.076e+00;SOR=0.144;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:432,36,0
chr1	230903350	rs3828126	T	C	971.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.250e-01;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=0.201;SOR=0.664;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:553,0,801
chr1	230904911	rs11122593	C	T	1420.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.402;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.18;SOR=0.781;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,25:43:99:677,0,421
chr1	230910485	.	CTT	C,CT	672.53	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.09;DP=30;ExcessHet=3.9794;FS=0.000;MQ=59.89;MQRankSum=0.00;QD=10.04;ReadPosRankSum=0.090;SOR=0.869;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,13,9:30:99:607,163,142,327,0,266
chr1	230914612	rs12130847	A	G	897.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413e+00;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.12;ReadPosRankSum=0.853;SOR=0.630;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,15:58:99:255,0,1202
chr1	230914729	rs1933631	A	C	1894.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=55;ExcessHet=3.9794;FS=4.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.728;SOR=1.127;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,34:55:99:946,0,512
chr1	230915827	.	CGTGT	C	683.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.46;ReadPosRankSum=0.703;SOR=1.255;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:310,21,0
chr1	230916617	rs140820012	A	AT	212.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=2.963;MQ=59.42;MQRankSum=0.00;QD=14.16;ReadPosRankSum=0.490;SOR=0.105;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:19:45,0,19
chr1	230922001	rs11122602	G	C	306.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=1.69;SOR=1.329;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:87,0,30
chr1	230927353	rs6671302	T	A	921.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146e+00;DB;DP=13;ExcessHet=1.5490;FS=3.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=-4.440e-01;SOR=2.235;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:119,0,294
chr1	230927871	rs1933635	T	C	1288.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.30;ReadPosRankSum=-5.240e-01;SOR=0.726;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:419,0,342
chr1	230928351	rs2282321	C	T	947.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=29;ExcessHet=3.9794;FS=1.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=1.28;SOR=0.462;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:466,0,380
chr1	230928512	rs7522057	C	G	2395.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033e+00;DB;DP=94;ExcessHet=3.9794;FS=0.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.012e+00;SOR=0.752;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,44:94:99:1002,0,1340
chr1	230930776	rs28359726	A	C	143.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=0.703;SOR=0.330;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:98:152,0,98
chr1	230975454	rs1202550	A	G	1177.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DB;DP=15;ExcessHet=3.9794;FS=2.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-2.280e-01;SOR=0.167;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:141,0,336
chr1	230979822	rs116389751	G	A	58.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,74
chr1	231004431	rs1202587	T	C	288.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.56;SOR=4.407;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr1	231042732	rs3811502	T	A	3764.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.060e-01;DB;DP=39;ExcessHet=3.0103;FS=4.539;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=0.650;SOR=0.342;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,15:39:99:332,0,672
chr1	231047310	rs10568287	TAC	T	2292.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.01;ReadPosRankSum=-3.490e-01;SOR=0.786;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:237,0,191
chr1	231047392	rs2153049	G	A	701.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=0.00;SOR=1.708;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:70,0,33
chr1	231052183	rs7537655	G	T	852.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=5.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=-1.981e+00;SOR=3.611;VQSLOD=15.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:115,0,147
chr1	231056149	.	C	T	135.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.440e-01;DP=15;ExcessHet=3.0103;FS=2.447;MQ=60.00;MQRankSum=0.00;QD=9.02;ReadPosRankSum=-6.770e-01;SOR=0.223;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:144,0,201
chr1	231057247	rs2275333	A	T	144.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=17;ExcessHet=3.0103;FS=5.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=-8.970e-01;SOR=2.494;VQSLOD=19.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:153,0,337
chr1	231059784	rs3748774	C	T	1028.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660e-01;DB;DP=13;ExcessHet=3.0103;FS=1.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=1.37;SOR=1.317;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:125,0,224
chr1	231060736	rs3748775	T	C	7872.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;DB;DP=67;ExcessHet=3.0103;FS=5.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=-5.690e-01;SOR=0.350;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:1181,0,766
chr1	231061057	rs3828132	A	G	489.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=-5.240e-01;SOR=3.767;VQSLOD=16.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:162,0,25
chr1	231061564	rs4240944	A	C	354.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=1.04;SOR=0.527;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:78,0,64
chr1	231064546	rs1343674	T	C	856.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=3.816;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:384,30,0
chr1	231064578	rs5781609	T	TCTC	1367.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870e-01;DB;DP=15;ExcessHet=3.0103;FS=6.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.35;ReadPosRankSum=0.184;SOR=2.517;VQSLOD=6.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:437,0,172
chr1	231064611	rs950029	G	A	1729.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e-01;DB;DP=18;ExcessHet=3.0103;FS=1.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.83;ReadPosRankSum=-7.970e-01;SOR=1.371;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:329,0,151
chr1	231067236	rs11122624	C	T	3634.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990e-01;DB;DP=63;ExcessHet=3.0103;FS=3.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-7.400e-01;SOR=1.124;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,28:63:99:610,0,852
chr1	231067318	rs11122625	G	T	1828.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e+00;DB;DP=39;ExcessHet=3.0103;FS=1.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-1.311e+00;SOR=0.569;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:535,0,490
chr1	231069340	rs12749386	C	T	299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=0.778;SOR=1.802;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:87:308,0,87
chr1	231069652	rs1890351	A	C	3831.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.15;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:458,0,620
chr1	231079381	rs6541239	A	G	1151.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=6.736;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:378,30,0
chr1	231080937	.	C	G	266.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.48;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:275,0,170
chr1	231081304	rs6673085	T	G	1607.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=16;ExcessHet=3.0103;FS=5.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=1.85;SOR=3.306;VQSLOD=17.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:250,0,244
chr1	231091972	rs12044966	C	T	728.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.16;ReadPosRankSum=1.12;SOR=1.287;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:200,0,103
chr1	231092180	rs11122161	G	A	428.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-3.490e-01;SOR=0.663;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:437,0,441
chr1	231092211	rs34436246	T	TG	470.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.343e+00;DB;DP=30;ExcessHet=3.0103;FS=1.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=0.728;SOR=1.230;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,16:30:99:479,0,410
chr1	231093785	rs59207624	CT	C	1017.04	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.810e-01;DB;DP=8;ExcessHet=0.4576;FS=8.262;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=-4.600e-01;SOR=2.231;VQSLOD=5.34;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,8:8:24:230,24,0
chr1	231094050	rs60736833	GA	G	562.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720e-01;DB;DP=37;ExcessHet=6.9897;FS=0.000;MQ=59.93;MQRankSum=0.00;QD=4.98;ReadPosRankSum=-9.070e-01;SOR=0.729;VQSLOD=5.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,17:37:99:355,0,264
chr1	231114465	rs76376323	C	G	338.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.710e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.53;ReadPosRankSum=0.527;SOR=0.714;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:347,0,222
chr1	231114595	rs11122174	C	T	326.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.470e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.537;SOR=0.646;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:228,0,161
chr1	231124055	rs10779804	T	C	702.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=68;ExcessHet=3.0103;FS=0.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=-1.452e+00;SOR=0.856;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:711,0,904
chr1	231125686	rs12024261	A	T	84.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-2.410e-01;SOR=0.283;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,218
chr1	231126172	rs10864648	T	G	95.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=0.385;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:104,0,100
chr1	231131328	rs36036399	T	TA	93.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.26;SOR=2.833;VQSLOD=4.80;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:231131328_T_TA:108,9,0:231131328
chr1	231131341	rs6690341	C	A	129.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=32.27;SOR=3.258;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:231131328_T_TA:143,12,0:231131328
chr1	231132597	rs10864649	G	C	267.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.936;SOR=0.818;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:178,0,117
chr1	231155499	rs145296244	G	C	229.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=0.282;SOR=0.859;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:17:238,0,17
chr1	231156073	rs7513011	T	A	1002.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=4.255;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:244,18,0
chr1	231161817	.	TA	T	553.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.549;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQRankSum=0.00;QD=13.83;ReadPosRankSum=-3.970e-01;SOR=0.843;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,10:16:26:258,26,0
chr1	231162072	rs4133249	C	T	482.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.46;SOR=5.136;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	231298699	rs112692510	T	G	3910.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.243e+00;DB;DP=270;ExcessHet=3.0103;FS=2.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-9.490e-01;SOR=0.550;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:114,156:270:99:3919,0,3040
chr1	231298937	rs113255684	C	T	2364.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.991e+00;DB;DP=168;ExcessHet=3.0103;FS=0.618;MQ=60.00;MQRankSum=0.00;QD=14.07;ReadPosRankSum=-5.220e-01;SOR=0.629;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,82:168:99:2373,0,2757
chr1	231321642	rs12096753	T	C	115.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=2.833;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr1	231321943	rs12070228	C	A	2437.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;DB;DP=93;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=0.543;SOR=0.807;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,91:93:99:2454,228,0
chr1	231322043	rs12096847	A	G	1004.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.060e-01;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=-1.084e+00;SOR=0.843;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,31:32:54:1021,54,0
chr1	231323140	rs6693752	T	A	1418.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=5.728;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:308,24,0
chr1	231323339	rs16853942	A	G	1725.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=59.76;POSITIVE_TRAIN_SITE;QD=32.55;SOR=0.808;VQSLOD=4.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1742,159,0
chr1	231334780	rs11122249	C	A	1526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.472e+00;DB;DP=163;ExcessHet=3.0103;FS=0.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.587;SOR=0.727;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,74:163:99:1535,0,2331
chr1	231336124	rs12069815	T	C	200.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.59;SOR=3.611;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
chr1	231337031	rs11122252	C	A	3001.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.39;SOR=1.423;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,84:84:99:1|1:231337031_C_A:3018,254,0:231337031
chr1	231337037	rs78871549	C	T	887.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=89;ExcessHet=3.0103;FS=0.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-7.100e-02;SOR=0.887;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,35:89:99:0|1:231337031_C_A:896,0,1352:231337031
chr1	231355918	rs6541262	C	G	627.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.72;ReadPosRankSum=-1.006e+00;SOR=2.448;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:231355918_C_G:144,0,193:231355918
chr1	231355919	rs530363	G	T	522.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.23;ReadPosRankSum=-5.980e-01;SOR=2.303;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:231355918_C_G:144,0,193:231355918
chr1	231359931	rs16854007	C	T	681.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.230e-01;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=1.76;SOR=0.813;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:690,0,978
chr1	231360327	rs56106609	C	T	69.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=0.693;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	231361110	rs11590715	C	T	954.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=67;ExcessHet=3.0103;FS=8.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-6.900e-02;SOR=1.799;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,37:67:99:963,0,726
chr1	231362923	rs491182	G	A	1943.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.460e-01;DB;DP=47;ExcessHet=1.5490;FS=2.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=0.725;SOR=0.975;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:602,0,521
chr1	231377081	rs518686	C	T	5605.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.97;SOR=1.421;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2384,218,0
chr1	231386612	rs508908	T	A	502.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.48;SOR=5.283;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:97,9,0
chr1	231396116	rs3215759	T	TTA	1001.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=26.59;SOR=6.184;VQSLOD=6.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:30:436,30,0
chr1	231400905	rs849714	A	G	279.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.22;SOR=4.174;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr1	231401596	rs532226	T	C	5438.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=2.109;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2246,191,0
chr1	231401902	rs574553	G	A	10700.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=0.991;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4630,434,0
chr1	231403830	rs579924	C	T	277.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=1.863;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	231406295	rs3767758	T	C	1593.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.32;SOR=5.892;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:752,54,0
chr1	231406961	rs539699	C	T	582.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.46;SOR=5.421;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:383,27,0
chr1	231410845	rs3767756	A	G	149.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=-1.282e+00;SOR=1.329;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:158,0,60
chr1	231480507	rs1009227	A	G	1838.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=1.56;SOR=0.801;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:219,0,202
chr1	231486908	rs2749716	T	C	878.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.55;ReadPosRankSum=-1.282e+00;SOR=3.180;VQSLOD=18.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:100,0,149
chr1	231486951	.	TAAA	T	536.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.46;MQRankSum=-4.550e-01;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-5.020e-01;SOR=0.972;VQSLOD=1.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:13:70:70,0,311
chr1	231486989	rs2474633	A	C	5122.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=-1.150e+00;SOR=0.736;VQSLOD=6.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,24:45:99:702,0,640
chr1	231487017	rs2474634	T	C	7072.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.310e-01;DB;DP=76;ExcessHet=3.0103;FS=1.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.177;SOR=0.863;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1005,0,994
chr1	231488524	rs2437150	C	T	7415.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=73;ExcessHet=3.0103;FS=0.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.86;ReadPosRankSum=0.296;SOR=0.761;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,31:73:99:853,0,1169
chr1	231489353	rs2749717	G	T	311.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=0.431;SOR=1.445;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,137
chr1	231502245	rs1435167	T	A	1811.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.040e-01;DB;DP=36;ExcessHet=3.0103;FS=3.556;MQ=60.00;MQRankSum=0.00;QD=16.32;ReadPosRankSum=-4.920e-01;SOR=0.537;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:36:99:425,0,507
chr1	231502310	rs1435166	T	C	2543.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-2.650e-01;SOR=0.820;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:384,0,422
chr1	231506557	rs2256908	G	A	2463.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=25;ExcessHet=3.0103;FS=4.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=0.611;SOR=2.162;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:439,0,220
chr1	231509408	rs2572263	C	T	381.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=0.967;SOR=3.258;VQSLOD=18.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:61:81,0,61
chr1	231509421	.	TGC	T	377.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.72;ReadPosRankSum=0.967;SOR=3.258;VQSLOD=4.28;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:61:0|1:231509421_TGC_T:81,0,61:231509421
chr1	231509427	rs34584064	T	C	377.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.31;ReadPosRankSum=0.967;SOR=3.258;VQSLOD=17.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:61:0|1:231509421_TGC_T:81,0,61:231509421
chr1	231509436	.	GTGTGTGTGTGTGTA	G	452.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.29;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:58:119,0,58
chr1	231509517	rs12139834	G	A	261.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-3.750e-01;SOR=0.582;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:270,0,264
chr1	231699398	.	ATT	A,AT	596.27	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.99;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=1.56;SOR=2.303;VQSLOD=6.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,5,7:14:50:204,85,158,50,0,51
chr1	231727447	rs1655305	A	G	13720.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=1.260;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3985,368,0
chr1	231747989	rs7548847	G	A	998.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=23;ExcessHet=1.5490;FS=1.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=-2.150e-01;SOR=1.165;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:246,0,337
chr1	231752797	rs76202527	A	G	191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.618;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:200,0,206
chr1	231763004	rs1865225	A	G	275.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.25;SOR=4.174;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr1	231830295	rs3738401	G	A	8613.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=197;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.845;SOR=0.708;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,102:197:99:2934,0,2383
chr1	231906488	.	T	C	579.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DP=31;ExcessHet=3.0103;FS=2.004;MQ=60.00;MQRankSum=0.00;QD=18.69;ReadPosRankSum=0.386;SOR=1.302;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:588,0,309
chr1	231935699	rs4658884	T	C	267	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.37;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	231936016	rs2759354	A	G	5668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=1.900;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1846,177,0
chr1	231936150	rs2255340	T	C	545.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=0.00;SOR=4.047;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr1	231954427	rs1535530	C	T	1970.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=0.924;SOR=1.439;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,4:20:99:100,0,528
chr1	231954872	rs11588937	C	T	1784.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=35;ExcessHet=6.9897;FS=0.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.939;SOR=0.807;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,15:35:99:341,0,535
chr1	231956086	rs11122343	A	T	3264.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=0.329;SOR=0.727;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:545,0,844
chr1	231957460	rs376216011	CT	C	189	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.70;MQRankSum=0.00;QD=7.87;ReadPosRankSum=0.619;SOR=0.826;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:50:50,0,84
chr1	232534957	rs12043251	T	C	5170.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=101;ExcessHet=1.5490;FS=1.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=-2.272e+00;SOR=0.708;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,41:101:99:946,0,1514
chr1	232535030	rs629939	C	T	8618.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=1.323;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2745,267,0
chr1	232564074	rs147555124	G	A	184.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=1.16;SOR=0.074;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:193,0,157
chr1	232564096	.	CTT	C,CT	777.31	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.428;DP=15;ExcessHet=3.0103;FS=1.495;MQ=59.18;MQRankSum=-1.410e-01;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=-5.100e-01;SOR=0.466;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,6,7:15:50:224,85,139,52,0,50
chr1	232568293	rs1547741	A	G	4346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=2.814;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1454,120,0
chr1	232575539	rs6664207	G	A	499.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.31;ReadPosRankSum=0.00;SOR=4.047;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:72,0,34
chr1	232577281	rs573140	T	G	1635.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=53;ExcessHet=3.9794;FS=1.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=1.12;SOR=0.474;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,30:53:99:886,0,693
chr1	232579383	.	C	A	967.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.550e-01;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.30;ReadPosRankSum=-1.643e+00;SOR=0.709;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,41:104:99:976,0,1611
chr1	232650750	rs3795366	A	G	21468.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=0.851;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,207:207:99:6471,620,0
chr1	232650867	rs4649383	C	T	15680.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.710e-01;DB;DP=221;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=1.73;SOR=0.742;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,100:221:99:2285,0,3051
chr1	232941153	rs12409898	C	T	3293.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=52;ExcessHet=3.9794;FS=5.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=2.75;SOR=0.620;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,24:52:99:704,0,780
chr1	232941354	rs12567597	G	T	1846.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.730e-01;DB;DP=200;ExcessHet=3.0103;FS=0.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=1.51;SOR=0.618;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,88:200:99:1855,0,2627
chr1	233086456	rs13381	T	C	4898.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=112;ExcessHet=1.5490;FS=1.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=0.247;SOR=0.567;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,56:112:99:1490,0,1268
chr1	233105442	rs6658396	G	A	700.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.761e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.04;ReadPosRankSum=0.233;SOR=1.329;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:233105437_C_A:491,39,0:233105437
chr1	233111951	rs1885004	G	A	446.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=5.136;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr1	233113827	rs1045158	G	T	3433.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=2.212;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1607,144,0
chr1	233119951	rs2885	C	T	914.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.907e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=-4.890e-01;SOR=0.546;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:571,42,0
chr1	233121791	rs12038915	G	A	3067.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e-01;DB;DP=66;ExcessHet=1.5490;FS=2.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=1.28;SOR=0.470;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2263,198,0
chr1	233122127	rs41309639	C	T	3794.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=87;ExcessHet=1.5490;FS=1.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.80;ReadPosRankSum=1.12;SOR=0.904;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2856,260,0
chr1	233134086	rs56231757	C	T	5707.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810e-01;DB;DP=134;ExcessHet=1.5490;FS=7.365;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=-2.595e+00;SOR=1.172;VQSLOD=5.29;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:68,66:134:99:1578,0,1743
chr1	233134393	rs11586537	G	A	460.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-7.460e-01;SOR=1.179;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:226,0,422
chr1	233137139	rs113959320	C	T	37.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.81;SOR=0.693;VQSLOD=15.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	233137225	rs140788891	CATAA	C	248.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.58;SOR=2.303;VQSLOD=6.18;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	233150270	rs6424263	T	C	867.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=4.003;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:247,21,0
chr1	233152910	rs11271054	A	AAAAGCAAGATTTTGAGTCCTCACAGCTATTCT	3721.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.844;DB;DP=40;ExcessHet=3.0103;FS=1.261;MQ=60.00;MQRankSum=0.00;QD=30.66;ReadPosRankSum=-1.703e+00;SOR=1.054;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1795,118,0
chr1	233248707	rs114705323	G	A	1053.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456e+00;DB;DP=115;ExcessHet=3.0103;FS=3.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=-7.860e-01;SOR=1.035;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,49:115:99:1062,0,1701
chr1	233296399	rs35864442	A	AG	1844.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.38;SOR=3.258;VQSLOD=5.33;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:485,36,0
chr1	233296891	rs2296515	T	C	4826.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.406e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=-1.816e+00;SOR=0.656;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1579,145,0
chr1	233296908	rs2296516	T	G	4363.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.680;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=-1.671e+00;SOR=0.705;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1622,158,0
chr1	233395214	rs2139998	T	A	987.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=0.956;SOR=0.311;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:555,0,399
chr1	233397267	rs10489808	G	A	572.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=0.907;SOR=0.544;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:235,0,353
chr1	233397366	rs12122968	G	T	125.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,110
chr1	233397752	rs6701073	T	C	1691.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430e-01;DB;DP=73;ExcessHet=3.9794;FS=0.661;MQ=59.93;MQRankSum=0.936;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.43;SOR=0.626;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,33:73:99:829,0,1048
chr1	233398670	rs12132556	C	A	850.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=0.272;SOR=0.892;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:213,0,319
chr1	233398713	rs1033325	C	T	1373.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.690e-01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.667;SOR=0.704;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:493,0,414
chr1	233398927	rs1033324	C	G	766.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=36;ExcessHet=3.9794;FS=1.068;MQ=60.00;MQRankSum=0.00;QD=11.10;ReadPosRankSum=-2.580e-01;SOR=0.976;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,11:36:99:0|1:233398927_C_G:336,0,1091:233398927
chr1	233398931	rs5781734	G	GC	718.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=31;ExcessHet=3.9794;FS=4.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.02;SOR=1.310;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,8:31:99:0|1:233398927_C_G:288,0,1054:233398927
chr1	233398993	rs1033323	C	A	310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=1.54;SOR=0.264;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:131,0,259
chr1	233511913	rs35806537	TAGAG	T	1017.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DB;DP=48;ExcessHet=3.0103;FS=4.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=-2.402e+00;SOR=1.473;VQSLOD=5.85;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,26:48:99:1026,0,1178
chr1	233512313	rs1294248	C	T	843.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=91;ExcessHet=3.0103;FS=0.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=1.99;SOR=0.804;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,37:91:99:852,0,1403
chr1	233515413	rs1402815	G	A	864.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350e-01;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=1.33;SOR=0.595;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,33:56:99:873,0,608
chr1	233517808	rs1294237	G	A	351.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=-3.660e-01;SOR=0.914;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:187,18,0
chr1	233518682	rs1294236	G	A	70.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=2.303;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	233749855	rs2795294	A	G	483.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=-3.500e-02;SOR=1.292;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:61:61,0,233
chr1	233785786	rs4649241	A	C	5683.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.087e+00;DB;DP=80;ExcessHet=3.0103;FS=0.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.29;ReadPosRankSum=1.72;SOR=0.617;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2374,240,0
chr1	234040742	rs12136133	A	C	2522.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DB;DP=116;ExcessHet=3.9794;FS=2.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.257;SOR=0.522;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,59:116:99:1474,0,1400
chr1	234041129	rs9435566	G	C	2654.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.56;SOR=2.985;VQSLOD=18.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:725,51,0
chr1	234041422	rs57010808	G	C	10913.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=497;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.959;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.884;SOR=0.733;VQSLOD=1.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:263,234:497:99:5644,0,6362
chr1	234367549	rs2236220	T	C	2817.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616e+00;DB;DP=71;ExcessHet=6.9897;FS=1.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=1.29;SOR=0.795;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,28:71:99:633,0,1144
chr1	234442376	rs674385	G	A	1395.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.690e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=0.215;SOR=0.686;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:206,0,222
chr1	234444761	rs11359233	T	TAAA	1336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=0.755;SOR=1.981;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:71:202,0,71
chr1	234454405	rs657010	A	C	1306.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.13;SOR=4.921;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:286,27,0
chr1	234509136	rs141632934	C	T	481.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=37;ExcessHet=3.0103;FS=1.675;MQ=59.73;MQRankSum=-1.030e+00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.21;SOR=0.327;VQSLOD=0.329;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,17:37:99:490,0,609
chr1	234509259	rs10910420	G	C	13605.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.520e-01;DB;DP=165;ExcessHet=3.0103;FS=1.473;MQ=59.99;MQRankSum=-8.710e-01;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=0.028;SOR=0.864;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,165:165:99:5049,494,0
chr1	234509858	rs61077059	GT	G	594.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.120e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=1.07;SOR=0.430;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:234509858_GT_G:180,12,0:234509858
chr1	234509865	rs45577939	T	G	671.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.74;ReadPosRankSum=0.712;SOR=0.560;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:234509858_GT_G:257,18,0:234509858
chr1	234510262	rs4300255	A	G	3452.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.262;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.16;ReadPosRankSum=2.72;SOR=0.687;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1349,134,0
chr1	234519319	rs141657444	G	GACAC	401.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.04;ReadPosRankSum=0.00;SOR=3.442;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	234519385	rs10797539	T	C	920.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=0.376;SOR=1.493;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:220,18,0
chr1	234519452	rs58896934	C	CT	1499.65	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.240e-01;DB;DP=16;ExcessHet=3.0103;FS=6.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.435;SOR=0.235;VQSLOD=6.42;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,15:16:22:426,22,0
chr1	234527575	rs3862040	C	T	1234.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.621e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=-8.170e-01;SOR=0.706;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:345,33,0
chr1	234527992	rs3754318	A	G	1417.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=0.371;SOR=1.225;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:234527992_A_G:571,39,0:234527992
chr1	234528006	rs3754317	A	G	1603.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.948e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.47;ReadPosRankSum=1.04;SOR=1.697;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:234527992_A_G:566,39,0:234527992
chr1	234528373	rs7523423	C	T	1064.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.42;ReadPosRankSum=0.778;SOR=2.368;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr1	234529552	rs2175594	C	T	5091.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;DB;DP=46;ExcessHet=3.0103;FS=10.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.87;ReadPosRankSum=-1.237e+00;SOR=0.170;VQSLOD=17.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,46:46:99:1|1:234529552_C_T:1944,138,0:234529552
chr1	234529570	rs2175593	G	A	4311.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622e+00;DB;DP=39;ExcessHet=3.0103;FS=12.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.37;ReadPosRankSum=-1.446e+00;SOR=0.102;VQSLOD=15.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:234529552_C_T:1785,120,0:234529552
chr1	234546245	rs1141264	C	T	5448.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=53;ExcessHet=3.0103;FS=3.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-5.200e-02;SOR=0.561;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1783,159,0
chr1	234556362	rs61825881	T	C	697.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.20;SOR=3.160;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:714,63,0
chr1	234556630	rs6661926	C	T	3179.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.889e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=1.26;SOR=0.614;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1250,117,0
chr1	234556646	rs6669819	T	A	2844.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.927;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.26;ReadPosRankSum=-3.300e-02;SOR=0.724;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:950,78,0
chr1	234556774	rs6666922	A	T	489.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.84;SOR=5.136;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	234594958	.	A	C	483.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.51;ReadPosRankSum=-1.520e-01;SOR=0.869;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:492,0,598
chr1	234601456	.	TA	T	457.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=25;ExcessHet=6.9897;FS=2.684;MQ=59.87;MQRankSum=0.00;QD=5.32;ReadPosRankSum=0.911;SOR=0.997;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:25:99:188,0,143
chr1	234601586	rs270504	G	A	295.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=-1.656e+00;SOR=0.714;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:304,0,548
chr1	234603075	rs270503	G	T	1084.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.90;ReadPosRankSum=-2.148e+00;SOR=2.179;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:142,0,154
chr1	234603386	rs270502	G	T	382.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.772e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.520;SOR=1.127;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:391,0,313
chr1	234608725	rs34245359	A	AT	688.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.59;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=6.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:90:90,0,91
chr1	234614921	rs517558	G	T	89.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.589;SOR=0.527;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:98:98,0,174
chr1	234615018	rs516626	T	C	36.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.32;SOR=0.693;VQSLOD=15.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr1	234744250	rs8722	G	A	3200.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.800e-01;DB;DP=189;ExcessHet=3.0103;FS=2.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.089;SOR=0.519;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,122:189:99:3209,0,1523
chr1	234744413	rs4636	C	A	4392.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=96;ExcessHet=1.5490;FS=4.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.96;ReadPosRankSum=1.32;SOR=0.369;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,95:96:99:3270,276,0
chr1	234745009	rs7545855	A	G	3659.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=64;ExcessHet=3.9794;FS=2.039;MQ=60.00;MQRankSum=0.00;QD=20.33;ReadPosRankSum=0.032;SOR=0.544;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1941,192,0
chr1	234953834	rs200007946	A	C	2240.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.94;DB;DP=25;ExcessHet=3.0103;FS=7.221;MQ=41.88;MQRankSum=-4.792e+00;QD=27.67;ReadPosRankSum=-1.202e+00;SOR=1.895;VQSLOD=-4.941e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:898,75,0
chr1	234953875	rs138215498	C	CA	573.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.110;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=42.02;MQRankSum=-3.481e+00;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=-5.790e-01;SOR=1.609;VQSLOD=0.490;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:246,21,0
chr1	235301496	rs367780945	CA	C	734.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-02;DB;DP=47;ExcessHet=6.9897;FS=7.633;MQ=59.93;MQRankSum=0.00;QD=4.06;ReadPosRankSum=0.011;SOR=0.318;VQSLOD=3.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,17:47:99:352,0,546
chr1	235316185	rs11351017	CT	C	161.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-2.100e-01;SOR=0.818;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:17:67,0,17
chr1	235324047	rs66533903	A	C	1067.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=40;ExcessHet=3.9794;FS=13.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.548;SOR=0.108;VQSLOD=14.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:665,0,713
chr1	235324298	rs2295815	T	C	2960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=99;ExcessHet=3.9794;FS=0.526;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-8.800e-02;SOR=0.742;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,45:99:99:1270,0,1471
chr1	235324545	rs66929873	T	A	3181.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=278;ExcessHet=3.0103;FS=4.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-1.780e-01;SOR=0.585;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:140,138:278:99:3190,0,3118
chr1	235336270	rs6429413	G	A	765.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:277,0,154
chr1	235341346	rs7534107	T	C	136.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.632;SOR=1.112;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:145,0,219
chr1	235357303	rs34768226	A	ATG	2236.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-02;DB;DP=27;ExcessHet=1.5490;FS=3.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.86;ReadPosRankSum=0.257;SOR=1.571;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,18:27:99:729,0,341
chr1	235383188	rs4659654	A	G	6241.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DB;DP=92;ExcessHet=3.9794;FS=1.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=0.512;SOR=0.611;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,52:92:99:1313,0,1005
chr1	235392354	rs4659674	T	A	193.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.57;SOR=1.981;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	235392546	rs12731746	T	C	3275.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=-8.360e-01;SOR=0.714;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:829,0,746
chr1	235394217	rs7517863	A	T	56.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.524;SOR=0.061;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,108
chr1	235394510	rs11321831	TA	T	274.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=40;ExcessHet=3.0103;FS=1.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.86;ReadPosRankSum=0.610;SOR=0.368;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,14:40:99:283,0,881
chr1	235394541	rs7518225	A	C	1433.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=29;ExcessHet=3.9794;FS=0.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.19;SOR=0.854;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:195,0,537
chr1	235403595	rs11581220	G	T	336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290e-01;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=0.065;SOR=0.610;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,14:43:99:345,0,815
chr1	235490391	rs3840452	CA	C	846.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910e-01;DB;DP=13;ExcessHet=6.9897;FS=6.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=-1.525e+00;SOR=0.085;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,9:13:99:298,0,111
chr1	235543262	rs11425048	C	CA	246.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.180;SOR=0.368;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:8:32:32,0,54
chr1	235543476	.	TTGTGTGTGTGTGTGTG	T,TTG	2542.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.225;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.18;ReadPosRankSum=0.979;SOR=0.990;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,11:18:99:756,308,297,204,0,148
chr1	235594182	rs2291687	A	G	2930.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.558e+00;DB;DP=39;ExcessHet=3.0103;FS=1.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=1.80;SOR=0.473;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1203,116,0
chr1	235594250	rs2291688	A	G	1025.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.600e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=-3.950e-01;SOR=1.981;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
chr1	235596681	rs10802710	G	A	220.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr1	235597252	rs12405889	T	G	3758.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.788e+00;DB;DP=38;ExcessHet=3.0103;FS=2.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.04;ReadPosRankSum=-7.900e-02;SOR=0.460;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1221,114,0
chr1	235598973	rs2055127	C	T	3004.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.221;DB;DP=38;ExcessHet=3.9794;FS=1.813;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=1.09;SOR=0.930;VQSLOD=6.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1301,113,0
chr1	235600129	rs6429082	T	C	320.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.90;ReadPosRankSum=-7.030e-01;SOR=0.495;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:36,3,0
chr1	235601867	rs10667524	T	TAAA	424.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=1.41;SOR=0.874;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:14:156,14,0
chr1	235601958	rs3819974	G	T	2149.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.990e-01;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.746;SOR=0.762;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1413,121,0
chr1	235611535	.	CA	C	316.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DP=20;ExcessHet=6.9897;FS=0.000;MQ=59.62;MQRankSum=0.238;QD=6.46;ReadPosRankSum=1.62;SOR=0.614;VQSLOD=0.237;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:20:86:86,0,148
chr1	235612320	rs704705	C	T	6716.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415e+00;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=0.830;SOR=0.814;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1904,116,0
chr1	235657765	rs34730227	CT	C	215.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=1.60;SOR=0.793;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,2:11:20:20,0,184
chr1	235659621	.	GA	G	874.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DP=17;ExcessHet=3.9794;FS=0.850;MQ=60.00;MQRankSum=0.00;QD=10.80;ReadPosRankSum=-5.700e-02;SOR=0.570;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,4:17:54:54,0,273
chr1	235715523	rs14326	A	G	8152.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.61;SOR=1.788;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2557,240,0
chr1	235715556	rs423026	C	G	5855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=3.215;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1855,144,0
chr1	235715601	rs400948	A	G	3527.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=8.909;VQSLOD=25.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1113,81,0
chr1	235715617	rs452950	A	C	2615.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=8.497;VQSLOD=24.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:913,72,0
chr1	235715661	rs387492	A	G	1451.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.11;SOR=7.168;VQSLOD=24.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:668,48,0
chr1	235747005	rs2774335	C	T	2762.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.480e-01;DB;DP=33;ExcessHet=3.0103;FS=5.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=2.09;SOR=0.223;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1176,99,0
chr1	235747154	rs2774336	A	G	5611.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.933e+00;DB;DP=65;ExcessHet=3.0103;FS=2.959;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.19;ReadPosRankSum=1.65;SOR=0.987;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2136,195,0
chr1	235865865	.	C	T	94.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.87;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:103,0,69
chr1	235918688	rs149138177	C	CAAAAGAAAAG	1837.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=9;ExcessHet=3.0103;FS=3.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-7.800e-02;SOR=1.483;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:45:675,45,0
chr1	235945502	rs2011390	A	G	732.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=10;ExcessHet=3.9794;FS=6.812;MQ=59.69;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.54;ReadPosRankSum=0.00;SOR=4.174;VQSLOD=-5.240e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:389,30,0
chr1	236142565	rs1536132	T	C	2103.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=-1.730e+00;SOR=0.670;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:296,0,250
chr1	236149054	rs2182119	G	A	122.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=58.47;MQRankSum=0.00;QD=27.34;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=2.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:58:67,0,58
chr1	236154012	rs1041111	C	T	564.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.368;SOR=0.418;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:273,0,266
chr1	236175153	rs2031486	T	C	125.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.66;ReadPosRankSum=1.10;SOR=1.981;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:134,0,107
chr1	236175339	rs2031487	T	C	5153.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.310e-01;DB;DP=121;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-7.750e-01;SOR=0.674;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,62:121:99:1489,0,1462
chr1	236176990	rs10803217	T	C	334.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.870e-01;DB;DP=31;ExcessHet=3.0103;FS=1.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.277;SOR=0.404;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:343,0,425
chr1	236192673	rs6693929	C	G	268.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=-5.490e-01;SOR=1.609;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:94:277,0,94
chr1	236193145	rs2273586	G	C	2668.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DB;DP=72;ExcessHet=6.9897;FS=2.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-4.020e-01;SOR=0.532;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,29:72:99:774,0,1266
chr1	236195378	rs3830945	CTG	C	122.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.87;SOR=2.833;VQSLOD=5.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr1	236305885	rs7522547	G	A	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.76;DB;DP=37;ExcessHet=3.0103;FS=6.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=1.14;SOR=2.625;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:534,0,603
chr1	236306535	rs7512803	A	C	495.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=5;ExcessHet=6.9897;FS=3.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:74:74,0,76
chr1	236393637	rs114781164	C	T	575.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590e-01;DB;DP=44;ExcessHet=3.0103;FS=1.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-2.009e+00;SOR=1.179;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,22:44:99:584,0,563
chr1	236393654	rs2812471	A	G	3567.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.80;SOR=2.810;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1317,108,0
chr1	236395979	rs11388266	C	CT	485.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=2.47;SOR=0.399;VQSLOD=6.47;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:278,33,0
chr1	236396335	rs4659636	C	T	113.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.39;SOR=1.609;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr1	236399442	rs1254194	G	T	578.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=4.047;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:595,45,0
chr1	236413230	rs2477599	T	A	2770.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.11;DB;DP=99;ExcessHet=0.4576;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.98;ReadPosRankSum=0.963;SOR=0.556;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,98:99:99:2787,286,0
chr1	236433135	rs3834089	AT	A	2753.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.990e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.69;ReadPosRankSum=-5.690e-01;SOR=0.679;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1313,99,0
chr1	236444879	rs11281666	G	GGCCCGGCCCT	3657.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=2.368;VQSLOD=5.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:48:631,48,0
chr1	236445212	rs2764567	A	G	1878.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=6.273;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:497,36,0
chr1	236557771	rs966365	G	A	6345.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.400e+00;DB;DP=83;ExcessHet=3.0103;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.329;SOR=0.678;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2491,248,0
chr1	236557928	rs966364	G	A	1782.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.345e+00;DB;DP=16;ExcessHet=3.0103;FS=5.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.76;ReadPosRankSum=0.370;SOR=0.172;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:580,48,0
chr1	236572368	.	TA	T,TAA	558.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.843;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.63;ReadPosRankSum=-1.080e-01;SOR=0.570;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,7,3:13:41:333,41,141,286,0,313
chr1	236572389	rs659901	G	A	706.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=18;ExcessHet=3.9794;FS=4.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=0.317;SOR=0.152;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:407,0,235
chr1	236572475	rs669710	A	G	1524.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=64;ExcessHet=3.9794;FS=1.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-1.150e-01;SOR=0.865;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,28:64:99:765,0,935
chr1	236577761	rs625444	T	C	35.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.88;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:44:44,0,106
chr1	236577762	rs61021118	C	CT,T	855.94	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.52;SOR=6.804;VQSLOD=7.10;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,2:4:50:103,50,72,53,0,103
chr1	236590497	rs1759388	C	G	301.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=31;ExcessHet=3.0103;FS=1.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=-9.510e-01;SOR=1.230;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:310,0,561
chr1	236590563	rs1778861	C	T	607.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.325;SOR=0.710;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,24:62:99:616,0,936
chr1	236590629	rs636378	C	T	965.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=80;ExcessHet=3.0103;FS=1.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-1.084e+00;SOR=0.461;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,38:80:99:974,0,1075
chr1	236590659	rs636048	G	C	876.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=75;ExcessHet=3.0103;FS=3.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=1.46;SOR=0.418;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:885,0,1162
chr1	236590816	rs635487	T	G	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.451e+00;DB;DP=31;ExcessHet=3.0103;FS=6.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=-4.550e-01;SOR=0.107;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:396,0,461
chr1	236645440	rs603158	C	T	231.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.9794;FS=3.802;MQ=58.83;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.524;SOR=2.419;VQSLOD=0.079;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:95:136,0,95
chr1	236645609	rs114632254	C	T	978.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DB;DP=70;ExcessHet=3.0103;FS=2.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=1.19;SOR=0.994;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,34:70:99:987,0,952
chr1	236689568	rs2251642	A	G	460.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=0.566;SOR=0.770;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:139,0,176
chr1	236700628	rs1810661	C	A	284.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:131,0,139
chr1	236700673	rs62670060	GAGC	G	976.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327e+00;DB;DP=20;ExcessHet=6.9897;FS=6.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-1.157e+00;SOR=0.066;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:435,0,387
chr1	236700807	rs1126407	T	A	3043.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e-01;DB;DP=87;ExcessHet=6.9897;FS=2.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-1.794e+00;SOR=0.877;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,38:87:99:929,0,1304
chr1	236700823	rs1041934	T	C	2923.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156e+00;DB;DP=95;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-1.493e+00;SOR=0.700;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,37:95:99:845,0,1569
chr1	236700857	rs1041935	C	T	3167.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=97;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=1.36;SOR=0.679;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,41:97:99:952,0,1466
chr1	236700982	rs2737706	T	C	2040.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;DB;DP=53;ExcessHet=6.9897;FS=2.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.219;SOR=0.503;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:642,0,748
chr1	236701098	rs34020982	T	TA	473.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.618;SOR=0.869;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:150,0,189
chr1	236701105	rs75416658	T	A	293.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.74;ReadPosRankSum=-9.310e-01;SOR=0.481;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:189,0,187
chr1	236701135	rs2737707	A	C	463.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=0.00;SOR=0.990;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:152,0,171
chr1	236701169	rs2737708	A	G	179.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.65;ReadPosRankSum=-9.670e-01;SOR=1.609;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:111,0,32
chr1	236702153	rs2244808	G	A	165.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.9794;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=19.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:73,0,36
chr1	236702209	rs1041936	C	T	802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=13;ExcessHet=6.9897;FS=4.183;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-3.300e-01;SOR=0.204;VQSLOD=5.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,10:13:96:0|1:236702209_C_T:411,0,96:236702209
chr1	236702210	rs1041937	A	G	802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;DB;DP=13;ExcessHet=6.9897;FS=4.183;MQ=59.71;MQRankSum=0.00;QD=27.69;ReadPosRankSum=-1.890e-01;SOR=0.204;VQSLOD=4.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,10:13:96:0|1:236702209_C_T:411,0,96:236702209
chr1	236702374	rs2472126	G	A	1279.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.740e-01;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-4.450e-01;SOR=0.698;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:477,0,376
chr1	236702447	rs12744425	T	G	811.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.78;ReadPosRankSum=-8.500e-02;SOR=0.582;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,9:22:99:0|1:236702447_T_G:339,0,519:236702447
chr1	236702450	rs12744427	T	C	1082.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=22;ExcessHet=6.9897;FS=0.938;MQ=60.00;MQRankSum=0.00;QD=15.69;ReadPosRankSum=-6.560e-01;SOR=0.859;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,9:22:99:0|1:236702447_T_G:339,0,519:236702447
chr1	236702475	rs11807205	A	G	608.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=17;ExcessHet=6.9897;FS=2.401;MQ=60.00;MQRankSum=0.00;QD=10.68;ReadPosRankSum=0.146;SOR=1.179;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:173,0,227
chr1	236702517	rs11807542	T	C	468.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.319;SOR=0.518;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:151,0,183
chr1	236702552	rs12758021	G	A	374.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.58;ReadPosRankSum=-1.282e+00;SOR=3.258;VQSLOD=17.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:236702552_G_A:225,15,0:236702552
chr1	236702557	.	GTA	G	374.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.45;ReadPosRankSum=-1.282e+00;SOR=3.258;VQSLOD=4.07;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:236702552_G_A:225,15,0:236702552
chr1	236702616	rs12759359	C	T	181.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.25;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr1	236703687	rs2799413	T	C	301.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.18;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr1	236703700	rs2244659	A	G	362.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.98;ReadPosRankSum=-3.660e-01;SOR=2.494;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr1	236703734	rs2243405	T	C	393.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=0.210;SOR=1.127;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:164,0,22
chr1	236703767	rs2758994	C	T	606.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.241;SOR=0.551;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:90:184,0,90
chr1	236703832	rs34818366	CG	C	1266.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DB;DP=27;ExcessHet=6.9897;FS=3.144;MQ=60.00;MQRankSum=0.00;QD=13.62;ReadPosRankSum=-6.150e-01;SOR=1.119;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:285,0,376
chr1	236705434	rs2799411	C	T	180.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=1.28;SOR=0.446;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:130,0,23
chr1	236706352	rs2758174	A	C	2123.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DB;DP=49;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.495;SOR=0.740;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,22:49:99:511,0,685
chr1	236706371	rs2758175	A	G	1696.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292e+00;DB;DP=42;ExcessHet=6.9897;FS=0.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-6.410e-01;SOR=0.584;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:362,0,635
chr1	236706425	rs2244267	G	A	810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-6.360e-01;SOR=0.546;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:254,0,360
chr1	236706467	rs2244261	C	T	450.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.155;SOR=0.293;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:90:90,0,245
chr1	236706577	rs41307704	C	T	202.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=1.69;SOR=0.368;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:114,0,31
chr1	236706671	rs2243530	T	A	2709.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.46;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.79;ReadPosRankSum=-1.046e+00;SOR=0.724;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:812,66,0
chr1	236706780	rs2243527	C	T	7476.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.193;DB;DP=88;ExcessHet=3.0103;FS=0.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=0.235;SOR=0.814;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2837,264,0
chr1	236706862	rs2243525	G	C	13010.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;DB;DP=174;ExcessHet=3.0103;FS=2.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=-3.040e-01;SOR=0.750;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5401,521,0
chr1	236707007	rs2799410	C	T	2525.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.138e+00;DB;DP=89;ExcessHet=6.9897;FS=1.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-6.330e-01;SOR=0.611;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,37:89:99:861,0,1591
chr1	236707036	rs2794786	A	T	2777.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956e+00;DB;DP=67;ExcessHet=6.9897;FS=7.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-4.190e-01;SOR=1.334;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,24:67:99:0|1:236707036_A_T:850,0,2539:236707036
chr1	236707045	rs2799409	C	T	2773.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=62;ExcessHet=6.9897;FS=5.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=-7.640e-01;SOR=1.242;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,22:62:99:0|1:236707036_A_T:837,0,2451:236707036
chr1	236708022	rs5781896	GT	G,GTTTT	2034.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.284e+00;DB;DP=20;ExcessHet=3.0103;FS=2.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=0.233;SOR=0.287;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,11,6:20:99:499,211,206,296,0,467
chr1	236708224	rs2244063	A	C	2183.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=51;ExcessHet=6.9897;FS=0.588;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.535;SOR=0.599;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,20:51:99:572,0,802
chr1	236708316	rs2758181	A	G	1092.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=20;ExcessHet=6.9897;FS=2.550;MQ=60.00;MQRankSum=0.00;QD=14.19;ReadPosRankSum=2.06;SOR=1.197;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:159,0,408
chr1	236708357	rs34357429	C	CCCTT	658.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DB;DP=8;ExcessHet=6.9897;FS=3.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=0.230;SOR=1.911;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,226
chr1	236711218	rs117527236	A	T	62.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:71,0,31
chr1	236711297	rs2254823	A	T	532.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DB;DP=11;ExcessHet=6.9897;FS=2.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=-7.900e-02;SOR=0.321;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:126,0,199
chr1	236711323	rs15701	T	C	855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=-2.590e-01;SOR=0.551;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:216,0,202
chr1	236711586	rs1160	G	A	1736.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520e-01;DB;DP=31;ExcessHet=6.9897;FS=3.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.282;SOR=0.413;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:384,0,453
chr1	236711810	rs2758997	A	G	235.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.41;SOR=3.912;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	236714064	rs6989	A	C	1277.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=-2.170e-01;SOR=0.604;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:286,0,174
chr1	236714292	.	TA	T	401.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684e+00;DP=21;ExcessHet=3.0103;FS=10.572;MQ=59.99;MQRankSum=0.00;QD=7.17;ReadPosRankSum=-9.600e-01;SOR=2.314;VQSLOD=1.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,4:21:33:33,0,240
chr1	236714335	rs2254487	C	T	827.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=14;ExcessHet=6.9897;FS=5.105;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=-5.570e-01;SOR=2.165;VQSLOD=3.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:209,0,161
chr1	236714384	rs2254483	G	A	397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=-6.520e-01;SOR=0.892;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:89:149,0,89
chr1	236714443	rs140534608	G	C	155.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:80,0,34
chr1	236715517	rs3189	T	C	275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-8.420e-01;SOR=1.781;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:54:54,0,146
chr1	236716686	rs1475133	G	A	1812.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.413e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=0.585;SOR=0.683;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:683,57,0
chr1	236716741	rs1475132	G	A	2179.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=39;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=0.301;SOR=0.659;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:562,0,494
chr1	236716833	rs115237098	T	C	2398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=96;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=1.29;SOR=0.718;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,42:96:99:1111,0,1365
chr1	236716959	rs2275685	C	T	4918.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=124;ExcessHet=6.9897;FS=5.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-1.260e+00;SOR=0.954;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,63:124:99:1574,0,1460
chr1	236717102	rs79114936	A	T	813.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=22;ExcessHet=3.9794;FS=5.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.590;SOR=0.179;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,6:22:99:0|1:236717102_A_T:190,0,654:236717102
chr1	236717104	rs2275686	A	G	1450.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=22;ExcessHet=6.9897;FS=11.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.403;SOR=2.064;VQSLOD=15.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,16:22:99:1|0:236717102_A_T:512,0,204:236717102
chr1	236717926	rs2275687	T	C	2189.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=61;ExcessHet=6.9897;FS=8.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-2.680e-01;SOR=1.063;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,23:61:99:565,0,989
chr1	236718421	rs6668716	G	C	103.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.66;SOR=2.833;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr1	236718524	rs6668848	G	C	768.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.490e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=0.131;SOR=1.002;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:419,0,129
chr1	236718561	rs6668926	G	A	929.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=25;ExcessHet=6.9897;FS=1.125;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.876;SOR=0.476;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:372,0,291
chr1	236718620	rs1126627	T	C	1798.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150e-01;DB;DP=54;ExcessHet=6.9897;FS=2.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-6.940e-01;SOR=0.489;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:763,0,568
chr1	236719135	rs1885532	T	C	5049.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.103;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.86;ReadPosRankSum=1.03;SOR=0.696;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1746,156,0
chr1	236719193	rs1885533	A	G	3645.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=101;ExcessHet=6.9897;FS=0.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.158;SOR=0.750;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,42:101:99:1054,0,1499
chr1	236719259	rs1885534	G	A	2839.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.090e-01;DB;DP=117;ExcessHet=3.9794;FS=2.205;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-8.620e-01;SOR=0.684;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,49:117:99:1145,0,1800
chr1	236719688	rs1407518	A	G	887.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557e+00;DB;DP=13;ExcessHet=6.9897;FS=1.689;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=-2.130e-01;SOR=0.378;VQSLOD=6.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:212,0,207
chr1	236720761	rs2799404	T	C	2496.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760e-01;DB;DP=37;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.769;SOR=0.688;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:449,0,522
chr1	236720833	rs2759005	C	T	1302.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=15;ExcessHet=6.9897;FS=1.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-5.050e-01;SOR=0.849;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:268,0,155
chr1	236721610	rs2275688	G	A	1807.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=50;ExcessHet=6.9897;FS=2.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=0.831;SOR=0.944;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,18:50:99:404,0,899
chr1	236721660	rs2275689	T	C	6044.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=80;ExcessHet=3.0103;FS=1.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=1.04;SOR=0.835;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2443,240,0
chr1	236721731	rs819431	T	C	8904.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.03;SOR=0.818;VQSLOD=3.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2862,288,0
chr1	236722182	rs819432	A	T	3558.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.22;SOR=2.258;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:922,80,0
chr1	236723177	rs10754576	G	A	1676.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.750e-01;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.112;SOR=0.608;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,17:33:99:0|1:236723177_G_A:618,0,894:236723177
chr1	236723178	rs10754577	C	A	1676.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.127;SOR=0.608;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,17:33:99:0|1:236723177_G_A:618,0,894:236723177
chr1	236724504	rs1077439	G	A	1419.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.410e-01;DB;DP=42;ExcessHet=6.9897;FS=6.183;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-6.740e-01;SOR=1.257;VQSLOD=5.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:621,0,538
chr1	236724605	rs1077438	G	T	2540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256e+00;DB;DP=75;ExcessHet=6.9897;FS=1.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-1.048e+00;SOR=0.699;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,33:75:99:700,0,1025
chr1	236724715	rs1077437	T	G	1635.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=41;ExcessHet=6.9897;FS=3.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-8.430e-01;SOR=0.407;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:404,0,630
chr1	236724766	rs1077436	C	T	455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694e+00;DB;DP=17;ExcessHet=6.9897;FS=1.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=-5.540e-01;SOR=0.325;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:124,0,351
chr1	236728150	rs2799434	A	G	172.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,105
chr1	236729458	rs2564744	G	C	337.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=1.24;SOR=0.602;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:66:66,0,194
chr1	236729867	rs2758172	C	T	2253.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.58;SOR=0.703;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:745,0,890
chr1	236730323	rs2799432	A	G	279.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=5;ExcessHet=6.9897;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=0.967;SOR=0.180;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,108
chr1	236730363	rs2564743	C	T	181.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=1.44;SOR=0.693;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:72:72,0,99
chr1	236732198	rs12135604	C	A	1088.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;QD=27.22;ReadPosRankSum=1.61;SOR=0.864;VQSLOD=5.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:26:0|1:236732198_C_A:253,0,26:236732198
chr1	236732199	.	A	AC	773.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DP=8;ExcessHet=1.5490;FS=4.803;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=1.61;SOR=3.126;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:26:0|1:236732198_C_A:253,0,26:236732198
chr1	236735939	rs2853602	T	C	3184.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=91;ExcessHet=3.9794;FS=1.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-4.400e-02;SOR=0.781;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1311,0,1205
chr1	236737888	rs78822940	C	T	2217.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=76;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=1.34;SOR=0.657;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,38:76:99:995,0,1057
chr1	236739301	rs2853598	T	C	555.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.619;SOR=0.446;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:126,0,212
chr1	236739416	rs2115740	C	T	2930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=80;ExcessHet=6.9897;FS=8.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.430;SOR=1.226;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,38:80:99:1025,0,1059
chr1	236739888	rs2853596	T	A	57.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.00;SOR=2.209;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:66,0,65
chr1	236740039	rs6658793	G	C	1217.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663e+00;DB;DP=23;ExcessHet=6.9897;FS=1.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=-2.340e-01;SOR=0.984;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,16:23:99:422,0,199
chr1	236740135	rs16833953	T	C	732.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130e-01;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.294;SOR=0.779;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,17:38:99:426,0,560
chr1	236744424	rs35257076	A	AT	263.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870e-01;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:65:65,0,94
chr1	236744712	rs4518892	C	A	1285.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-02;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=0.382;SOR=0.565;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,6:19:99:0|1:236744712_C_A:156,0,507:236744712
chr1	236744720	rs11338847	TA	T	215.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DB;DP=15;ExcessHet=3.9794;FS=4.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.81;ReadPosRankSum=1.55;SOR=1.907;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,8:15:99:1|0:236744712_C_A:164,0,251:236744712
chr1	236744854	rs12065886	T	C	78.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=2.303;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr1	236746275	rs2794769	G	C	3060.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=73;ExcessHet=6.9897;FS=1.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-7.970e-01;SOR=0.601;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1105,0,856
chr1	236746443	rs2794768	C	T	1419.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.670e-01;DB;DP=35;ExcessHet=6.9897;FS=0.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-1.420e-01;SOR=0.812;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:648,0,254
chr1	236748505	rs1006456	T	C	4566.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=100;ExcessHet=6.9897;FS=1.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.679;SOR=0.793;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,48:100:99:1197,0,1173
chr1	236748630	rs1006455	C	T	1317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741e+00;DB;DP=21;ExcessHet=6.9897;FS=4.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=0.462;SOR=2.137;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,12:21:99:0|1:236748630_C_T:457,0,644:236748630
chr1	236748636	rs1006454	G	A	1262.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214e+00;DB;DP=20;ExcessHet=6.9897;FS=6.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=1.27;SOR=2.893;VQSLOD=17.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,11:20:99:0|1:236748630_C_T:435,0,647:236748630
chr1	236749022	rs10925166	G	A	1095.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.530e-01;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.456;SOR=0.791;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,6:23:99:192,0,912
chr1	236749026	rs10925167	T	A	670.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=0.735;SOR=0.909;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,6:23:97:97,0,1028
chr1	236749348	rs2794764	C	T	1452.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996e+00;DB;DP=28;ExcessHet=6.9897;FS=9.728;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.372;SOR=0.116;VQSLOD=19.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:518,0,387
chr1	236749433	rs2799421	A	C	692.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=8;ExcessHet=6.9897;FS=1.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=-1.350e-01;SOR=0.921;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:158,0,103
chr1	236749451	rs3831993	TA	T	1142.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=10;ExcessHet=3.0103;FS=2.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.12;ReadPosRankSum=-5.980e-01;SOR=0.768;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:410,30,0
chr1	236749649	rs2794763	T	C	1849.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DB;DP=84;ExcessHet=3.9794;FS=1.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=1.30;SOR=0.588;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,36:84:99:826,0,1184
chr1	236749817	rs2799420	C	T	1121.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421e+00;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-2.280e-01;SOR=0.797;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:290,0,544
chr1	236751069	rs16834002	T	A	176.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.10;SOR=0.368;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:39,0,32
chr1	236751519	rs34200005	GA	G	1156.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.082;SOR=0.579;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,9:19:99:307,0,347
chr1	236753982	rs2564740	A	G	177.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=0.524;SOR=1.085;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:89,0,65
chr1	236754423	rs35920875	CAT	C	174.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.838e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-5.240e-01;SOR=0.307;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	236755039	rs67741563	T	TA	321.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:236755039_T_TA:162,0,122:236755039
chr1	236755041	rs16834016	C	A	321.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.33;ReadPosRankSum=-2.720e-01;SOR=0.465;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:236755039_T_TA:162,0,122:236755039
chr1	236755170	rs2794760	G	T	1236.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531e+00;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-4.600e-02;SOR=0.754;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:396,0,374
chr1	236755427	rs2794759	A	G	1821.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-1.038e+00;SOR=0.754;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:585,0,566
chr1	236755690	rs2794758	G	A	450.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:81:141,0,81
chr1	236755814	rs2794757	G	A	2190.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=38;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=-7.770e-01;SOR=0.705;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,21:38:99:0|1:236755814_G_A:809,0,926:236755814
chr1	236755837	rs2564739	C	T	2122.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DB;DP=42;ExcessHet=6.9897;FS=0.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.582;SOR=0.610;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,23:42:99:0|1:236755814_G_A:843,0,943:236755814
chr1	236755937	rs67239913	TA	T	544.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.690e-01;DB;DP=24;ExcessHet=6.9897;FS=8.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.090;SOR=0.139;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,15:24:99:346,0,181
chr1	236757121	rs2794755	G	C	423.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.366;SOR=0.693;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:203,0,194
chr1	236757200	rs2564738	A	G	1702.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DB;DP=44;ExcessHet=6.9897;FS=1.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.612;SOR=0.456;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:749,0,643
chr1	236757229	rs2794754	G	A	2283.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.665e+00;DB;DP=63;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.255;SOR=0.775;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,34:63:99:929,0,811
chr1	236757507	rs2794753	A	G	1341.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.750e-01;DB;DP=17;ExcessHet=6.9897;FS=2.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.826;SOR=1.414;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:342,0,237
chr1	236758887	rs2794751	T	C	2608.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=60;ExcessHet=6.9897;FS=3.096;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-1.480e-01;SOR=0.770;VQSLOD=6.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,33:60:99:810,0,600
chr1	236759060	rs2794750	T	C	1840.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=32;ExcessHet=6.9897;FS=16.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=1.23;SOR=0.199;VQSLOD=12.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:442,0,505
chr1	236759964	rs2758163	G	T	298.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.85;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr1	236760368	rs2564737	T	C	552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.627;SOR=1.528;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:158,0,167
chr1	236766447	rs16834050	T	A	1933.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=56;ExcessHet=3.9794;FS=0.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.207;SOR=0.840;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,25:56:99:789,0,879
chr1	236767072	rs1529540	A	G	638.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=3.258;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:344,27,0
chr1	236767176	rs1529541	C	G	1888.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=39;ExcessHet=6.9897;FS=1.747;MQ=60.00;MQRankSum=0.00;QD=16.57;ReadPosRankSum=-3.550e-01;SOR=0.925;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,13:39:99:358,0,680
chr1	236767178	rs375752396	AG	A	1841.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.037e+00;DB;DP=38;ExcessHet=3.9794;FS=0.845;MQ=60.00;MQRankSum=0.00;QD=15.74;ReadPosRankSum=-1.184e+00;SOR=0.534;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:4,34:38:2:1|1:236767178_AG_A:780,2,0:236767178
chr1	236767330	rs10802551	A	G	6251.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=0.075;SOR=0.675;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2315,218,0
chr1	236850256	rs12046163	A	G	929.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=-3.270e-01;SOR=0.732;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:357,0,269
chr1	236881403	rs2275399	C	T	687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=-5.980e-01;SOR=0.502;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:236881403_C_T:140,0,114:236881403
chr1	236881407	rs10925203	T	C	190.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=1.04;SOR=0.569;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:98:1|0:236881403_C_T:98,0,159:236881403
chr1	236882110	rs1341865	G	A	5354.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.26;SOR=1.959;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1754,155,0
chr1	236882303	rs1341864	T	C	4417.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=2.129;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1495,135,0
chr1	236883161	rs1773444	A	G	2007.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=1.22;SOR=0.808;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:555,0,335
chr1	236883240	rs1768053	T	C	9104.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=1.716;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2950,299,0
chr1	236883421	rs1341863	C	T	9434.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.38;DB;DP=122;ExcessHet=3.9794;FS=4.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=1.78;SOR=0.434;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,51:122:99:1193,0,1813
chr1	236883564	rs1341862	G	A	3888.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.28;ReadPosRankSum=1.86;SOR=0.795;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:694,0,520
chr1	236889111	rs12081658	G	C	586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.914;SOR=0.600;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:196,0,269
chr1	236890781	rs1768056	A	G	1800.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.376e+00;DB;DP=18;ExcessHet=3.0103;FS=6.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.01;ReadPosRankSum=0.605;SOR=2.636;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:231,0,278
chr1	236890814	rs147735389	AGAT	A	573.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=1.07;SOR=0.874;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,15:28:99:582,0,452
chr1	236897633	rs707203	A	G	5231.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=2.239;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1196,114,0
chr1	236899107	.	T	C	2290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280e-01;DP=178;ExcessHet=3.0103;FS=7.716;MQ=60.00;MQRankSum=0.00;QD=12.87;ReadPosRankSum=4.000e-03;SOR=0.356;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,94:178:99:2299,0,2092
chr1	236899899	rs11355106	TC	T	6814.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=93;ExcessHet=3.0103;FS=1.125;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=-5.020e-01;SOR=0.800;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3036,280,0
chr1	236900018	rs7542508	G	A	1479.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.720e-01;DB;DP=32;ExcessHet=6.9897;FS=4.141;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.064;SOR=1.207;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:340,0,490
chr1	236900598	rs7521191	C	T	537.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.79;ReadPosRankSum=-7.030e-01;SOR=1.528;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr1	236902560	rs7527525	C	T	4212.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-01;DB;DP=107;ExcessHet=6.9897;FS=19.446;MQ=59.99;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=9.000e-03;SOR=1.494;VQSLOD=-7.745e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:58,49:107:99:1293,0,1601
chr1	236902594	rs2288601	C	G	14972.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.418;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5175,481,0
chr1	236902865	rs2288602	A	C	7622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=205;ExcessHet=6.9897;FS=1.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.385;SOR=0.591;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,92:205:99:2478,0,2896
chr1	236902955	rs7544174	T	C	5747.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=127;ExcessHet=6.9897;FS=1.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.514;SOR=0.577;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,71:127:99:1958,0,1490
chr1	236911137	rs10925211	A	G	263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=1.09;SOR=0.392;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:272,0,372
chr1	236912219	rs3818884	G	T	538.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.39;SOR=3.912;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr1	236912286	rs2297956	G	A	1604.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=5.994;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:249,21,0
chr1	236912597	rs2297955	A	G	462.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.981e+00;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-7.370e-01;SOR=0.911;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,19:46:99:471,0,842
chr1	236914576	rs3738544	C	T	1602.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=9;ExcessHet=3.0103;FS=8.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.10;ReadPosRankSum=1.45;SOR=5.283;VQSLOD=12.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:133,0,175
chr1	236914610	rs3738545	G	C	2490.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.293;SOR=1.836;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:329,0,260
chr1	236923299	rs10925223	A	G	414.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=2.303;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	236924506	rs2282366	A	G	8129.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.39;SOR=1.376;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2231,213,0
chr1	236924732	rs10546570	CGTGTGT	C	681.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=1.28;SOR=2.093;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:236924732_CGTGTGT_C:250,18,0:236924732
chr1	236924740	rs72762104	T	C	681.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.02;SOR=2.093;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:236924732_CGTGTGT_C:250,18,0:236924732
chr1	236926030	rs1051251	A	G	2321.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=0.112;SOR=1.043;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:932,72,0
chr1	236958532	rs28372871	G	T	1954.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.127;SOR=0.661;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:769,0,608
chr1	236959252	rs12354209	G	A	407.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=-2.310e-01;SOR=0.892;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:248,21,0
chr1	236972327	rs12567062	G	A	310.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=0.263;SOR=0.804;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:146,0,63
chr1	236978992	rs5781924	T	TTCTG	2040.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.570e-01;DB;DP=28;ExcessHet=3.9794;FS=1.032;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.21;ReadPosRankSum=-1.279e+00;SOR=0.574;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1259,84,0
chr1	236979597	rs3795708	A	G	334.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.361;SOR=0.387;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:87:87,0,208
chr1	236987790	rs4077829	G	T	543.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=18;ExcessHet=3.9794;FS=1.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-2.310e-01;SOR=0.283;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:273,0,220
chr1	236988593	rs5781926	A	AT	980.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.255;SOR=0.760;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,14:33:99:341,0,505
chr1	236989891	rs1856769	C	T	233.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.524;SOR=0.283;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,95
chr1	237001926	rs3820568	A	G	1076.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-6.530e-01;SOR=0.631;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:383,0,466
chr1	237002032	rs55748381	A	C	362.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-3.110e-01;SOR=0.540;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:145,0,214
chr1	237013914	rs35913043	CTGA	C	1276.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=0.607;SOR=1.657;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:435,0,391
chr1	237023333	rs10925254	T	C	696.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.807;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.64;ReadPosRankSum=-4.680e-01;SOR=1.179;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:342,24,0
chr1	237023369	.	GCCCCCCCC	G	239.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.27;ReadPosRankSum=1.28;SOR=2.584;VQSLOD=4.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	237037853	rs2712831	C	A	226.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.69;SOR=3.912;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr1	237037881	rs58213669	A	T	76.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:85,0,28
chr1	237037998	rs150727404	CT	C	2330.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.014;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.215;SOR=0.749;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:237037998_CT_C:1447,138,0:237037998
chr1	237038008	rs10925256	T	A	719.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682e+00;DB;DP=52;ExcessHet=3.9794;FS=4.334;MQ=59.90;MQRankSum=0.738;QD=7.19;ReadPosRankSum=-1.590e+00;SOR=0.331;VQSLOD=0.187;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,17:52:99:0|1:237037998_CT_C:271,0,957:237037998
chr1	237038221	rs148485826	G	C	601.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=53;ExcessHet=3.0103;FS=2.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-4.860e-01;SOR=1.232;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,20:53:99:610,0,993
chr1	237048086	rs10925260	A	C	218.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.21;ReadPosRankSum=1.15;SOR=2.584;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr1	237048500	rs1805087	A	G	713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-1.639e+00;SOR=0.563;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:722,0,819
chr1	237048562	rs2275566	G	A	2269.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.753;DB;DP=27;ExcessHet=3.9794;FS=0.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.116;SOR=0.567;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:988,81,0
chr1	237048676	rs2275565	G	T	91.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-6.520e-01;SOR=0.495;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,141
chr1	237049879	rs12065382	C	T	1360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120e-01;DB;DP=43;ExcessHet=3.9794;FS=2.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.195;SOR=0.425;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:585,0,577
chr1	237052792	rs3768150	T	A	680.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.253e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=0.464;SOR=1.981;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:269,21,0
chr1	237054569	rs2229276	A	G	1520.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=61;ExcessHet=3.9794;FS=2.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.835;SOR=1.005;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,27:61:99:635,0,1054
chr1	237057608	rs2297965	G	A	4293.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.12;DB;DP=95;ExcessHet=1.5490;FS=1.329;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=-8.690e-01;SOR=0.846;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3166,285,0
chr1	237058744	rs12070777	C	A	5300.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869e+00;DB;DP=199;ExcessHet=3.9794;FS=4.067;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.431;SOR=0.476;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,102:199:99:2434,0,2552
chr1	237058828	rs1131449	C	T	6967.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=146;ExcessHet=1.5490;FS=0.493;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=-1.777e+00;SOR=0.767;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4659,436,0
chr1	237058996	rs75739277	C	CTATT	4100.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=39;ExcessHet=3.9794;FS=3.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.16;ReadPosRankSum=0.627;SOR=1.060;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1755,117,0
chr1	237060433	rs3820571	G	T	3701.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.331e+00;DB;DP=65;ExcessHet=3.9794;FS=1.073;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.656;SOR=0.605;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2071,195,0
chr1	237060608	.	A	ATG	119.52	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.88;SOR=1.609;VQSLOD=6.17;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,1:1:9:134,9,0
chr1	237060610	.	G	GCGCGCGCGCACACACACACACACACA	120.72	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.42;SOR=1.609;VQSLOD=6.13;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:9:134,9,0
chr1	237060945	rs67705775	CT	C	520.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DB;DP=55;ExcessHet=3.9794;FS=1.448;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=-8.160e-01;SOR=0.551;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,26:55:99:502,0,511
chr1	237061056	rs2853522	A	C	1326.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.36;DB;DP=30;ExcessHet=1.5490;FS=6.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=-3.500e-01;SOR=1.931;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1118,90,0
chr1	237063335	rs1050996	G	C	2403.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=48;ExcessHet=3.9794;FS=13.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=1.42;SOR=0.204;VQSLOD=15.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1443,144,0
chr1	237063504	rs9779	A	G	1951.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460e-01;DB;DP=64;ExcessHet=3.9794;FS=2.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.935;SOR=0.483;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,44:64:99:1094,0,409
chr1	237063709	rs370555547	T	TA	366.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.210;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.91;ReadPosRankSum=1.38;SOR=1.292;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,5:6:8:133,8,0
chr1	237494052	rs146712883	G	A	534.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067e+00;DB;DP=51;ExcessHet=3.0103;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=1.56;SOR=0.503;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:543,0,694
chr1	237497252	rs6429005	A	G	158.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.13;SOR=3.258;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr1	237504649	rs10925373	A	T	297.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=0.381;SOR=1.802;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:87:306,0,87
chr1	237504708	rs2787102	A	G	1160.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-9.500e-02;SOR=0.931;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:408,0,323
chr1	237504759	rs10925374	T	C	982.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DB;DP=65;ExcessHet=3.0103;FS=2.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-9.210e-01;SOR=0.443;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,35:65:99:991,0,748
chr1	237505104	rs11424484	A	AT	745.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-1.295e+00;SOR=0.990;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:77:219,0,77
chr1	237516073	rs10802607	T	C	2899.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=85;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-1.450e+00;SOR=0.707;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,39:85:99:958,0,1112
chr1	237516455	rs12023548	A	G	64.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=2.303;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	237519137	rs10802608	T	A	266.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.241;SOR=0.307;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:100,0,216
chr1	237519165	rs10925382	G	T	734.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.909e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-7.280e-01;SOR=0.341;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:285,0,267
chr1	237540615	rs10925391	A	C	4076.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=91;ExcessHet=6.9897;FS=3.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-1.030e-01;SOR=0.496;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1105,0,1153
chr1	237551241	rs71561868	G	GTC	2908.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=2.376;VQSLOD=6.37;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,20:20:60:860,60,0
chr1	237551376	rs10754602	T	A	7820.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.43;SOR=1.002;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2502,253,0
chr1	237580606	rs6673182	G	T	1538.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=5.728;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:237580606_G_T:652,45,0:237580606
chr1	237580612	rs6673187	G	C	1514.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.97;SOR=7.054;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:42:1|1:237580606_G_T:628,42,0:237580606
chr1	237586196	rs16835235	C	T	446.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.78;ReadPosRankSum=0.180;SOR=1.863;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:58:173,0,58
chr1	237586384	rs16835237	T	C	2296.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=79;ExcessHet=3.9794;FS=1.959;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.759;SOR=0.540;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,54:79:99:1427,0,503
chr1	237619875	rs60132900	AT	A	3345.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.840e-01;DB;DP=131;ExcessHet=6.9897;FS=2.513;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=-6.240e-01;SOR=0.907;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:72,53:131:99:1017,0,1524
chr1	237634229	rs2805440	A	G	1960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474e+00;DB;DP=76;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-9.070e-01;SOR=0.676;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,35:76:99:915,0,1160
chr1	237656124	.	AAAGG	A	845	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=27.26;ReadPosRankSum=1.03;SOR=1.839;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:237,0,219
chr1	237670140	rs2618702	A	G	2922.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840e-01;DB;DP=82;ExcessHet=6.9897;FS=4.125;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.715;SOR=0.951;VQSLOD=6.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,22:82:99:458,0,1480
chr1	237693471	rs2805447	T	C	660.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=58.88;QD=29.32;SOR=4.047;VQSLOD=4.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:237693471_T_C:315,21,0:237693471
chr1	237693479	rs2779364	C	T	819.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.12;QD=32.77;SOR=4.514;VQSLOD=4.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:237693471_T_C:356,24,0:237693471
chr1	237693921	rs2779365	A	G	1462.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.30;SOR=3.556;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:325,27,0
chr1	237711644	rs2618661	T	C	1570.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=10;ExcessHet=3.0103;FS=3.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.08;ReadPosRankSum=-3.500e-02;SOR=1.609;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:424,30,0
chr1	237711797	rs2253273	A	G	6131.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.600e-01;DB;DP=77;ExcessHet=3.0103;FS=3.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.22;ReadPosRankSum=-8.500e-01;SOR=0.950;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2218,230,0
chr1	237729774	rs2248295	G	A	1581.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.32;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=0.669;SOR=1.681;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:568,45,0
chr1	237730124	rs2805390	A	G	4337.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.428e+00;DB;DP=57;ExcessHet=3.9794;FS=3.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=0.779;SOR=0.405;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1989,171,0
chr1	237730169	rs2779401	C	T	3120.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.259e+00;DB;DP=34;ExcessHet=3.0103;FS=3.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.90;ReadPosRankSum=-4.200e-02;SOR=2.325;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1275,101,0
chr1	237732332	rs2618717	C	T	900.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.600e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=1.58;SOR=1.675;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:482,36,0
chr1	237732395	rs2805396	G	A	2035.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.88;DB;DP=33;ExcessHet=3.9794;FS=10.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=1.38;SOR=0.051;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1181,99,0
chr1	237753074	rs11331089	AT	A	1809.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;DB;DP=47;ExcessHet=6.9897;FS=0.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-3.790e-01;SOR=0.578;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,19:47:99:403,0,657
chr1	237753364	rs2805409	A	C	781.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=9;ExcessHet=3.9794;FS=8.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=1.98;SOR=3.352;VQSLOD=14.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:106,0,219
chr1	237754340	rs1332777	A	G	1993.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-01;DB;DP=18;ExcessHet=3.9794;FS=4.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.92;ReadPosRankSum=0.784;SOR=0.298;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:239,0,365
chr1	237755188	rs2618713	C	T	5258.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687e+00;DB;DP=61;ExcessHet=3.9794;FS=3.955;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=1.49;SOR=0.447;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,37:61:99:1064,0,686
chr1	237755203	rs2779430	T	C	4775.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980e-01;DB;DP=51;ExcessHet=3.9794;FS=6.130;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=-1.150e-01;SOR=0.343;VQSLOD=6.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,30:51:99:869,0,667
chr1	237755348	rs2779431	T	C	921.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=6.273;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:221,15,0
chr1	237757027	rs1478915	G	A	1725.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=-1.410e-01;SOR=0.902;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:274,0,292
chr1	237765200	rs2805418	G	A	1022.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=18;ExcessHet=3.9794;FS=2.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=1.55;SOR=1.773;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:179,0,320
chr1	237765470	rs791541	A	T	1998.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=32;ExcessHet=3.9794;FS=2.748;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.481;SOR=0.324;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:465,0,573
chr1	237778084	rs3766871	G	A	769.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790e-01;DB;DP=76;ExcessHet=3.0103;FS=1.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=1.42;SOR=0.473;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,30:76:99:778,0,1303
chr1	237788826	rs6659362	C	G	65.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:74,0,67
chr1	237788844	rs571092	T	C	361.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.61;SOR=4.615;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr1	237788862	rs571026	T	C	630.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.10;SOR=5.670;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:307,24,0
chr1	237789317	rs512336	A	G	628.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=59.42;POSITIVE_TRAIN_SITE;QD=29.96;SOR=5.670;VQSLOD=6.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr1	237794603	rs1759123	A	G	1256.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DB;DP=22;ExcessHet=3.9794;FS=1.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.26;SOR=0.510;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:336,0,305
chr1	237794913	.	ATTTTTTTTTTTTTT	A,ATT	474.82	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.501e+00;DP=8;ExcessHet=1.5490;FS=0.000;MQ=59.77;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.92;ReadPosRankSum=0.967;SOR=0.399;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,6:8:40:429,179,148,71,0,40
chr1	237794986	.	T	TGAA	195.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DP=7;ExcessHet=3.0103;FS=0.000;MQ=58.56;MQRankSum=-3.660e-01;QD=27.99;ReadPosRankSum=-3.660e-01;SOR=0.527;VQSLOD=0.478;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:69:0|1:237794986_T_TGAA:204,0,69:237794986
chr1	237794989	.	ACG	A	196.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=58.56;MQRankSum=-3.660e-01;POSITIVE_TRAIN_SITE;QD=28.08;ReadPosRankSum=-3.660e-01;SOR=0.527;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:69:0|1:237794986_T_TGAA:204,0,69:237794986
chr1	237796837	rs10802626	G	A	1404.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.290e-01;DB;DP=51;ExcessHet=3.9794;FS=0.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.359;SOR=0.582;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,30:51:99:702,0,541
chr1	237796850	rs12563366	A	G	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=52;ExcessHet=3.0103;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.77;ReadPosRankSum=1.27;SOR=0.914;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,18:52:99:465,0,841
chr1	237797082	rs1967579	T	G	413.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.00;SOR=1.127;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:20:212,0,20
chr1	237797103	rs1967580	C	A	106.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.82;SOR=2.833;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr1	237798041	rs11413589	T	TA	122.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:50:83,0,50
chr1	237798342	rs41305973	G	A	1102.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110e-01;DB;DP=91;ExcessHet=3.0103;FS=0.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-9.850e-01;SOR=0.825;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1111,0,1118
chr1	237801404	rs34788513	G	GAA	223.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=4.174;VQSLOD=6.40;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:239,21,0
chr1	237801770	rs707189	T	C	16368.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=1.348;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5173,509,0
chr1	237802176	rs505489	A	C	231.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.83;SOR=3.912;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr1	237802559	rs530109	T	C	3884.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.78;SOR=1.549;VQSLOD=5.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:90:1|1:237802558_A_T:1033,90,0:237802558
chr1	237802679	rs61834870	G	A	135.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=1.37;SOR=0.941;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:144,0,103
chr1	237813030	rs487056	C	T	447.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.94;SOR=5.136;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr1	237813126	rs625006	A	G	634.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=0.395;SOR=1.101;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:488,39,0
chr1	237814783	rs684923	C	T	2743.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.634;DB;DP=69;ExcessHet=1.5490;FS=0.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=1.07;SOR=0.605;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2155,207,0
chr1	237814898	rs2184014	C	A	411.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.34;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=0.851;SOR=1.061;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:387,27,0
chr1	237817514	rs3831940	GA	G	987.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.490e-01;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.58;ReadPosRankSum=0.920;SOR=0.582;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:741,75,0
chr1	237817784	rs669375	A	G	899.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398e+00;DB;DP=28;ExcessHet=3.9794;FS=1.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-8.500e-01;SOR=0.352;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:519,0,383
chr1	237819014	rs515474	C	G	440.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=12;ExcessHet=3.9794;FS=2.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=1.46;SOR=1.493;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:228,0,183
chr1	237819431	rs589806	C	T	137.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=1.65;SOR=0.941;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,95
chr1	237823256	rs10925485	A	C	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DB;DP=92;ExcessHet=3.0103;FS=0.816;MQ=59.89;MQRankSum=-1.284e+00;POSITIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=-7.890e-01;SOR=0.838;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,34:92:99:725,0,1356
chr1	237824332	rs471647	G	A	1197.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.27;SOR=2.899;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:262,27,0
chr1	237831103	rs477245	C	A	2986.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=3.698;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:670,54,0
chr1	237838001	rs114806261	G	A	763.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.636;SOR=0.788;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:772,0,624
chr1	237841390	rs34967813	A	G	1619.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-2.850e-01;SOR=0.655;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:703,0,535
chr1	237850666	rs10679267	C	CT	940.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=52;ExcessHet=6.9897;FS=0.712;MQ=59.23;MQRankSum=-9.490e-01;POSITIVE_TRAIN_SITE;QD=8.11;ReadPosRankSum=1.08;SOR=0.583;VQSLOD=1.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,24:52:99:367,0,281
chr1	237862164	rs1521745	G	C	2933.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.547;DB;DP=50;ExcessHet=3.9794;FS=2.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-4.440e-01;SOR=0.908;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1577,150,0
chr1	237862436	rs1521744	T	C	1042.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=-6.230e-01;SOR=2.910;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:268,18,0
chr1	237862458	rs3736539	A	G	404.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.35;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=0.431;SOR=1.022;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr1	237863439	rs12754190	G	A	1873.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.094e+00;DB;DP=19;ExcessHet=3.9794;FS=0.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=2.67;SOR=0.512;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:624,57,0
chr1	237863718	rs2797436	T	G	6234.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=1.284;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1650,168,0
chr1	237865203	rs939699	C	T	6042.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.33;SOR=2.742;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1769,165,0
chr1	237872714	rs35261418	GT	G	2026.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=1.47;SOR=0.926;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,19:34:99:427,0,297
chr1	237881770	rs2797441	C	T	6940.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=0.839;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1822,192,0
chr1	237886739	rs2797444	C	T	270.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.75;SOR=4.407;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr1	237890437	rs2685301	C	T	13260.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=0.745;VQSLOD=19.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3742,360,0
chr1	237893674	rs2797445	C	T	5769.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=1.154;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1783,168,0
chr1	237895805	rs1879673	G	A	175	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=1.38;SOR=1.609;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,73
chr1	237897216	rs76235729	A	G	92.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-4.840e-01;SOR=0.495;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:101,0,139
chr1	237905568	rs35446101	T	TC	267.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560e-01;DB;DP=24;ExcessHet=3.0103;FS=1.810;MQ=59.49;MQRankSum=1.00;QD=11.14;ReadPosRankSum=0.899;SOR=0.292;VQSLOD=0.163;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,11:24:99:276,0,392
chr1	237906607	rs2819771	A	G	369.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.40;ReadPosRankSum=-1.036e+00;SOR=0.941;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr1	237919409	rs35560079	GA	G	61.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=-3.280e-01;SOR=0.495;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:69:69,0,95
chr1	237923053	rs2253831	C	T	3607.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=41;ExcessHet=3.9794;FS=1.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=0.421;SOR=0.835;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:542,0,401
chr1	237924044	rs2819762	T	C	113.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=2.833;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr1	237941697	rs57135410	C	CA	152.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:38:64,0,38
chr1	237946964	rs790889	T	C	1478.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=51;ExcessHet=3.9794;FS=3.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.709;SOR=1.106;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,20:51:99:550,0,755
chr1	237951451	rs2256242	A	G	1743.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.800e-02;DB;DP=29;ExcessHet=3.9794;FS=7.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=-7.250e-01;SOR=2.104;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1004,87,0
chr1	237951482	rs16835818	G	A	541.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=20;ExcessHet=3.9794;FS=9.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.883;SOR=3.500;VQSLOD=12.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:272,0,326
chr1	237954545	rs790904	G	C	1767.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.94;SOR=7.569;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:869,63,0
chr1	237955666	.	T	TGTGTGTGCGCGC	209.02	PASS	AC=1;AF=0.500;AN=2;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.65;QD=29.30;SOR=0.527;VQSLOD=4.00;culprit=SOR	GT:AD:DP:GQ:PL	0/1:5,0:5:87:87,0,347
chr1	237955682	rs12739270	C	T	192.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=58.95;MQRankSum=0.887;NEGATIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=1.93;SOR=1.179;VQSLOD=-7.454e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:99:200,0,112
chr1	237955688	.	T	TGC	182.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DP=8;ExcessHet=3.0103;FS=0.000;MQ=58.88;MQRankSum=0.887;QD=22.79;ReadPosRankSum=1.93;SOR=1.179;VQSLOD=0.153;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:99:191,0,192
chr1	237955698	rs61830309	C	T	554.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=59.42;QD=33.80;SOR=5.136;VQSLOD=4.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:359,24,0
chr1	237957146	rs790902	G	A	1459.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.95;SOR=3.312;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:709,60,0
chr1	237957161	rs790901	A	G	1786.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=2.494;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:844,66,0
chr1	237957309	rs790900	A	C	3236.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.05;SOR=1.134;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1514,138,0
chr1	237958750	rs35572672	A	AT	722.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.26;ReadPosRankSum=-1.340e-01;SOR=1.981;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,12:13:12:274,12,0
chr1	237964934	rs7543732	A	G	1597.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.47;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=0.896;SOR=1.609;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:144,0,254
chr1	237965043	rs2790347	A	G	1146.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=47;ExcessHet=3.9794;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-1.900e-01;SOR=0.891;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,13:47:99:318,0,909
chr1	237965094	rs2794820	G	T	1317.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=57;ExcessHet=3.9794;FS=1.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=1.17;SOR=0.898;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,18:57:99:513,0,987
chr1	237965131	rs9428384	G	A	1654.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;DB;DP=51;ExcessHet=3.9794;FS=5.617;MQ=60.00;MQRankSum=0.00;QD=13.45;ReadPosRankSum=0.311;SOR=1.007;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,20:51:99:465,0,1172
chr1	237965133	rs35563566	A	AT	1280.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DB;DP=46;ExcessHet=3.9794;FS=3.470;MQ=60.00;MQRankSum=0.00;QD=12.31;ReadPosRankSum=0.459;SOR=0.844;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,22:46:99:801,0,466
chr1	238046253	rs2794814	T	C	905.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.380e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=1.92;SOR=2.115;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,146
chr1	238048325	rs2298100	A	G	4606.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.915;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.31;ReadPosRankSum=-6.260e-01;SOR=0.720;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1768,150,0
chr1	238051933	rs2236595	C	T	1052.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=-3.540e-01;SOR=0.660;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:217,0,256
chr1	240254874	rs7521945	T	C	494.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.00;SOR=0.586;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:71:144,0,71
chr1	240255568	rs140531536	GGGC	G	4038.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=55;ExcessHet=3.9794;FS=9.045;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=1.19;SOR=1.379;VQSLOD=5.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,14:55:99:439,0,1688
chr1	240286773	rs3820506	C	G	875.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=-7.860e-01;SOR=0.495;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:236,0,191
chr1	240370742	.	C	A	3447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;DP=273;ExcessHet=3.0103;FS=0.443;MQ=59.99;MQRankSum=-9.820e-01;QD=12.63;ReadPosRankSum=1.20;SOR=0.732;VQSLOD=0.135;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:135,138:273:99:3456,0,3134
chr1	240421383	rs10926181	G	A	2708.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=36;ExcessHet=3.9794;FS=0.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=-1.140e+00;SOR=0.569;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1231,108,0
chr1	240421437	rs10926182	C	T	685.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.78;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=1.20;SOR=1.697;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:449,33,0
chr1	240448461	.	G	A	886.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DP=106;ExcessHet=3.0103;FS=2.562;MQ=60.00;MQRankSum=0.00;QD=8.36;ReadPosRankSum=-1.154e+00;SOR=0.484;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,40:106:99:895,0,1561
chr1	240458380	rs16832176	T	C	72.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.35;SOR=2.303;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr1	240492543	rs6686353	G	A	2764.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=59;ExcessHet=1.5490;FS=0.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=-1.650e-01;SOR=0.538;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2018,177,0
chr1	240492734	rs3795677	G	A	2874.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=0.4576;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=29.94;SOR=0.735;VQSLOD=4.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2891,288,0
chr1	240492952	rs3795679	G	C	425.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.99;SOR=1.981;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:442,36,0
chr1	240493101	rs200344013	C	CTT	61.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=2.303;VQSLOD=5.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr1	240497265	rs10157874	A	C	3502.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=70;ExcessHet=1.5490;FS=5.070;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=-1.181e+00;SOR=1.101;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2289,212,0
chr1	240497598	rs12122068	T	C	280.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=4.407;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:297,24,0
chr1	240497657	rs10926220	C	T	69.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.51;SOR=2.303;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	240519251	.	CAAAAAAAAAAAAAAAAAAAA	C,CA	934.64	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.950e-01;DP=27;ExcessHet=0.4576;FS=8.293;MQ=60.00;MQRankSum=0.00;QD=27.94;ReadPosRankSum=0.514;SOR=3.590;VQSLOD=2.65;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,8,14:27:99:952,349,345,194,0,129
chr1	240555652	rs41269371	C	A	130.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.86;ReadPosRankSum=-1.436e+00;SOR=1.071;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:139,0,438
chr1	240556035	rs9730073	T	C	554.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.20;ReadPosRankSum=1.36;SOR=1.981;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:302,21,0
chr1	240601269	rs2356386	A	G	2198.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.180e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.56;ReadPosRankSum=0.472;SOR=0.748;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:637,57,0
chr1	240635491	rs2210861	G	C	640.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=3.383;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:187,18,0
chr1	240637258	rs10600255	GAT	G	226.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=1.38;SOR=0.859;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,83
chr1	240637571	rs882869	A	G	1160.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e+00;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.43;SOR=0.765;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:489,0,617
chr1	240643167	rs11578184	A	C	381.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.57;ReadPosRankSum=1.01;SOR=0.368;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:139,0,173
chr1	240643184	rs9442211	C	T	509.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=1.28;SOR=0.627;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:128,0,300
chr1	240643435	rs12748248	A	T	791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-4.620e-01;SOR=0.843;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:433,0,321
chr1	240655330	rs9287248	G	A	1367.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570e-01;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=-1.351e+00;SOR=0.703;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,19:24:99:540,0,107
chr1	240656824	rs10926280	C	A	2830.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=113;ExcessHet=3.9794;FS=5.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=1.47;SOR=0.412;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,60:113:99:1528,0,1362
chr1	240657002	rs138151479	A	AT	80.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=0.967;SOR=0.527;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:39:39,0,97
chr1	240964233	rs4603122	G	C	283.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=0.967;SOR=1.609;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:81,0,32
chr1	240975213	rs2275742	T	C	1393.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-9.200e-02;SOR=0.660;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:229,0,404
chr1	240975435	rs2275744	C	T	1045.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.69;ReadPosRankSum=1.54;SOR=1.038;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:70:295,0,70
chr1	240976706	rs149188218	CAATGCAAATCTTAATGCA	C	1240.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.85;SOR=6.736;VQSLOD=5.94;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:397,27,0
chr1	240977964	rs12744536	G	T	2707.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.02;SOR=2.630;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:684,54,0
chr1	240979803	rs3738068	G	A	2192.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=8.051;VQSLOD=24.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:437,33,0
chr1	241033561	rs138698532	T	G	292.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=-1.480e-01;SOR=0.593;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:301,0,121
chr1	241100122	rs261857	G	T	276.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-1.282e+00;SOR=2.303;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr1	241146322	rs7520707	A	G	2406.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.030e+00;DB;DP=56;ExcessHet=1.5490;FS=0.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=2.62;SOR=0.924;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1461,166,0
chr1	241261787	rs12026118	C	T	263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=1.93;SOR=0.593;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,203
chr1	241519098	rs4659599	T	A	7262.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.14;SOR=0.921;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2586,260,0
chr1	241519317	rs6677041	A	G	281.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=-9.670e-01;SOR=1.402;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:79,0,31
chr1	241663902	rs144131869	T	TGAGAGAGA	2406.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DB;DP=48;ExcessHet=3.0103;FS=1.965;MQ=59.75;MQRankSum=0.00;QD=20.22;ReadPosRankSum=0.128;SOR=0.446;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,17:48:99:733,0,1000
chr1	241667244	rs4659607	G	T	1402.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.771e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-1.980e-01;SOR=0.785;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:407,0,565
chr1	241669249	rs12065955	C	T	814.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=72;ExcessHet=3.0103;FS=5.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.762;SOR=1.638;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,27:72:99:823,0,1248
chr1	241676758	rs10926500	C	T	2264.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=45;ExcessHet=3.9794;FS=2.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=-3.090e-01;SOR=1.035;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:627,0,625
chr1	241682820	rs111416913	G	T	64.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.524;SOR=0.223;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:73,0,71
chr1	241695792	rs3819976	T	C	680.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722e+00;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-1.480e-01;SOR=0.648;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:689,0,544
chr1	241695845	rs3765802	C	G	243.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391e+00;DB;DP=18;ExcessHet=3.0103;FS=2.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-8.900e-02;SOR=0.223;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:252,0,256
chr1	241712134	rs11556464	C	T	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-7.320e-01;SOR=0.540;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:396,0,528
chr1	241728011	rs10637579	T	TTCTC	291.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.10;SOR=4.174;VQSLOD=4.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	241728046	rs68039623	C	G	486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.19;ReadPosRankSum=-2.410e-01;SOR=1.230;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:29:151,0,29
chr1	241728198	rs12139441	A	G	2749.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=65;ExcessHet=6.9897;FS=0.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-6.410e-01;SOR=0.637;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1093,0,827
chr1	241729614	rs10754731	T	G	1547.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.08;ReadPosRankSum=0.996;SOR=4.514;VQSLOD=13.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:267,18,0
chr1	241730054	rs2275163	C	T	1626.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-02;DB;DP=50;ExcessHet=3.9794;FS=0.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-1.029e+00;SOR=0.611;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:678,0,766
chr1	241730153	rs9970943	G	T	1615.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.56;SOR=3.258;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:581,48,0
chr1	241750285	rs685722	T	A	403.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=-8.420e-01;SOR=2.303;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:145,0,26
chr1	241751899	rs34879227	GTCA	G	898.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-2.850e-01;SOR=1.193;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:225,0,471
chr1	241755567	rs1053221	T	C	920.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=11;ExcessHet=6.9897;FS=5.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=-9.900e-02;SOR=0.093;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:85:323,0,85
chr1	241767930	rs632966	G	A	4736.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.19;DB;DP=90;ExcessHet=3.9794;FS=1.115;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.669;SOR=0.797;VQSLOD=6.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,39:90:99:1031,0,1388
chr1	241796947	rs148004337	ATGC	A	186.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=-7.000e-01;SOR=0.693;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:195,0,248
chr1	241798631	rs3737604	C	T	7131.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=192;ExcessHet=6.9897;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.619;SOR=0.624;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,94:192:99:2490,0,2288
chr1	241803636	rs7513575	T	C	322.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=1.04;SOR=0.105;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:143,15,0
chr1	241803658	rs7513451	A	G	310.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr1	241803672	rs187475644	G	A	99.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.86;ReadPosRankSum=1.15;SOR=0.223;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:77,0,30
chr1	241815647	rs12562115	T	G	369.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=28;ExcessHet=3.0103;FS=6.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-1.480e-01;SOR=1.928;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,9:28:99:0|1:241815647_T_G:378,0,1019:241815647
chr1	241815651	rs12561924	A	T	404.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DB;DP=30;ExcessHet=3.0103;FS=8.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-9.690e-01;SOR=2.321;VQSLOD=17.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,11:30:99:0|1:241815647_T_G:413,0,1016:241815647
chr1	241838057	rs67170285	C	T	5271.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.955e+00;DB;DP=76;ExcessHet=3.9794;FS=13.168;MQ=60.00;MQRankSum=0.00;QD=31.19;ReadPosRankSum=0.186;SOR=0.169;VQSLOD=12.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,75:76:99:1|1:241838057_C_T:3095,140,0:241838057
chr1	241838065	rs66585415	T	C	5258.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.990e-01;DB;DP=70;ExcessHet=3.9794;FS=10.931;MQ=60.00;MQRankSum=0.00;QD=33.71;ReadPosRankSum=0.506;SOR=0.177;VQSLOD=15.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,69:70:99:1|1:241838057_C_T:3089,137,0:241838057
chr1	241838139	.	CCCTTCCTTCCTTCTTTCCTTCCTCCCTCCCTCCTTTCTTTCTTTCCTTCTTGCTTTTATTTCCTTCCTCTTATT	C	250.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.27;ReadPosRankSum=-1.981e+00;SOR=3.690;VQSLOD=1.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:9:23,9,0
chr1	241847018	rs10802979	C	T	1008.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.57;ReadPosRankSum=0.792;SOR=2.833;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
chr1	241886262	rs12733206	T	C	201.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.718e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.40;ReadPosRankSum=-6.520e-01;SOR=1.402;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr1	241886754	rs10926548	T	C	1550.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=33;ExcessHet=3.9794;FS=1.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=0.654;SOR=0.443;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,15:33:99:0|1:241886754_T_C:572,0,1170:241886754
chr1	241886764	rs10926549	A	G	1437.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.247;DB;DP=34;ExcessHet=3.9794;FS=2.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=0.555;SOR=0.327;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,15:34:99:0|1:241886754_T_C:569,0,1192:241886754
chr1	241901935	rs6413961	A	C	783.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=1.01;SOR=2.833;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:112,0,137
chr1	241907519	rs7411702	G	A	57.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,77
chr1	241907548	rs7418198	A	C	610.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=5.670;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr1	241907691	rs7418599	A	G	2403.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.880e-01;DB;DP=43;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=-7.340e-01;SOR=0.696;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,26:43:99:644,0,392
chr1	241907817	rs10802990	T	C	3859.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=63;ExcessHet=3.9794;FS=1.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=1.14;SOR=0.603;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,35:63:99:928,0,661
chr1	241908033	rs12129775	T	C	71.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:80,0,35
chr1	241912674	rs6669629	A	C	560.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=5.549;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:352,27,0
chr1	241913062	rs11432682	C	CT	2534.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.030e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=-9.600e-02;SOR=0.810;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1002,96,0
chr1	241913224	rs10926563	G	C	139.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.79;SOR=3.258;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:152,12,0
chr1	241932567	rs56396922	C	G	1029.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=0.573;SOR=0.941;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:522,36,0
chr1	241932999	.	A	G	64.68	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.34;SOR=2.303;VQSLOD=18.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	241933876	rs11809239	A	G	3655.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.21;ReadPosRankSum=2.14;SOR=0.814;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1541,138,0
chr1	241946766	rs953597	A	C	4409.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.239;DB;DP=51;ExcessHet=3.0103;FS=2.919;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=0.862;SOR=1.132;VQSLOD=6.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,23:51:99:478,0,710
chr1	241954005	.	TAA	T,TA	1436.35	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.260e-01;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=1.61;SOR=0.682;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,6,17:25:66:457,285,366,94,0,66
chr1	241964559	rs4658661	C	T,G	7641.04	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.174;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=1.10;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=-4.720e-01;SOR=0.682;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,45,41:86:99:2596,1315,1180,1280,0,1157
chr1	242013592	rs111865531	A	AC	319.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=0.341;SOR=0.593;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,89
chr1	242015820	rs2526704	A	G	1403.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.09;SOR=7.054;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:766,54,0
chr1	242017009	rs1635515	A	G	157.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.84;SOR=0.693;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr1	242020391	rs3094880	T	A	283.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:242020391_T_A:75,0,181:242020391
chr1	242020392	rs3121390	C	T	283.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.38;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:242020391_T_A:75,0,181:242020391
chr1	242020495	rs2995544	C	T	2357.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=3.511;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1263,105,0
chr1	242020804	rs4149896	A	G	229.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.841e+00;DB;DP=22;ExcessHet=3.0103;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=0.00;SOR=0.155;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:238,0,350
chr1	242021678	rs148258524	GTCTA	G	219.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.254;SOR=0.473;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:228,0,458
chr1	242022130	rs2526699	T	C	480.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.44;SOR=5.136;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:232,18,0
chr1	242024923	rs4149919	A	G	777.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.510e-01;DB;DP=51;ExcessHet=3.0103;FS=1.332;MQ=59.82;MQRankSum=-9.040e-01;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.293;SOR=1.097;VQSLOD=1.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,27:51:99:786,0,685
chr1	242030151	rs735943	A	G	4763.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=1.734;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2025,192,0
chr1	242030559	rs4149948	C	T	99.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-1.890e-01;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,115
chr1	242035213	rs35496250	G	GT	155.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-1.534e+00;SOR=3.442;VQSLOD=4.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:51,9,0
chr1	242035382	rs4149963	C	T	863.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730e-01;DB;DP=76;ExcessHet=3.0103;FS=2.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.458;SOR=0.465;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:872,0,1042
chr1	242035438	rs4149965	G	A	2479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=108;ExcessHet=3.9794;FS=2.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.85;SOR=0.849;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,56:108:99:1432,0,1228
chr1	242035722	rs851780	G	A	193.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.90;SOR=3.611;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	242041933	rs1776147	A	G	334.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=4.407;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:178,12,0
chr1	242042545	rs1776148	A	G	4441.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=0.926;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4458,423,0
chr1	242042690	rs1418760	A	G	1630.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930e-01;DB;DP=40;ExcessHet=6.9897;FS=4.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.601;SOR=0.359;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:504,0,635
chr1	242045275	rs1635498	C	T	13800.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.20;SOR=0.779;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3953,392,0
chr1	242048464	rs1635489	G	A	234.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.75;SOR=3.912;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr1	242048514	rs10666416	G	GTAAA,GTAAATAAA	1536.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.48;SOR=2.670;VQSLOD=3.11;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,3:5:75:271,132,120,90,0,75
chr1	242048674	rs9350	C	T	755.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178e+00;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-1.614e+00;SOR=0.723;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,36:78:99:764,0,1031
chr1	242052621	rs4150018	T	G	483.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=1.11;SOR=2.712;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:260,21,0
chr1	242052685	rs4150020	C	G	191.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=-3.730e-01;SOR=0.836;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:200,0,474
chr1	242053030	rs4150021	AT	A	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.10;ReadPosRankSum=1.48;SOR=1.112;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,9:23:99:241,0,399
chr1	242053042	rs851797	A	G	2435.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.31;ReadPosRankSum=-5.320e-01;SOR=1.179;VQSLOD=6.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:361,0,307
chr1	242120870	rs3851307	C	G	1137.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=5.486;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:333,27,0
chr1	242120953	rs3851306	T	C	3458.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.57;SOR=3.564;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:98:1163,98,0
chr1	242121011	rs34082719	ATAAG	A	11842.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=2.258;VQSLOD=4.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,92:92:99:4101,277,0
chr1	242121052	rs3851305	C	G	16981.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.68;SOR=1.597;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,130:130:99:1|1:242121052_C_G:5878,400,0:242121052
chr1	242121061	rs3915586	C	T	18208.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=1.429;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,148:148:99:1|1:242121052_C_G:6390,445,0:242121052
chr1	242121540	rs56335758	G	A	16094.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.12;SOR=1.316;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4447,407,0
chr1	242121796	rs3851304	G	T	14190.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.55;SOR=0.975;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3995,371,0
chr1	242161553	rs28534726	G	A	728.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=6.091;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr1	242161619	rs2049067	C	A	1919.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.84;SOR=3.258;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:539,45,0
chr1	242161679	rs28408563	G	A	4699.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=1.824;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1465,138,0
chr1	242270805	rs34191588	T	TCTC	733.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.97;SOR=3.126;VQSLOD=5.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr1	242271323	rs4658619	T	G	193.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=3.611;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr1	242383170	rs5782230	T	TAC	3892.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=1.22;SOR=0.678;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,15:41:99:542,0,1028
chr1	242383201	rs1973498	T	G	4482.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=65;ExcessHet=3.9794;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=-6.560e-01;SOR=0.635;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:683,0,1031
chr1	242383510	rs7547029	T	C	2878.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=32;ExcessHet=3.9794;FS=1.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=-6.040e-01;SOR=0.551;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:379,0,637
chr1	242511556	rs112478548	AACAAAG	A	4568.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.910e-01;DB;DP=35;ExcessHet=3.0103;FS=1.687;MQ=59.53;MQRankSum=-3.295e+00;QD=32.87;ReadPosRankSum=0.239;SOR=0.897;VQSLOD=-1.225e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1566,106,0
chr1	242612420	rs2654871	G	A	125.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=-3.890e-01;SOR=0.412;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:134,0,202
chr1	243332978	rs182591395	G	T	1004.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-01;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=42.27;MQRankSum=-2.643e+00;QD=9.66;ReadPosRankSum=1.03;SOR=0.639;VQSLOD=-4.462e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,45:104:99:1013,0,1466
chr1	243335940	rs74889777	GA	G	587.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.312e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=58.08;MQRankSum=-4.960e-01;QD=21.00;ReadPosRankSum=-1.580e+00;SOR=0.409;VQSLOD=0.066;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:286,30,0
chr1	243348854	rs10803122	A	T	69.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=53.03;POSITIVE_TRAIN_SITE;QD=34.53;SOR=2.303;VQSLOD=2.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr1	243362331	rs2789172	C	T	5264.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=39.60;POSITIVE_TRAIN_SITE;QD=33.32;SOR=2.908;VQSLOD=-3.865e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1609,150,0
chr1	243419429	rs3904682	T	A	5045.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.130e-01;DB;DP=78;ExcessHet=3.9794;FS=1.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.748;SOR=0.848;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2272,233,0
chr1	243434558	rs2130597	A	T	1482.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.17;SOR=7.328;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:471,36,0
chr1	243449881	rs3818802	G	A	2115.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.388;DB;DP=22;ExcessHet=3.9794;FS=1.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=1.05;SOR=0.942;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:703,66,0
chr1	243465061	rs2636322	G	A	463.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=4.174;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:143,15,0
chr1	243471192	rs953492	A	G	357.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.53;ReadPosRankSum=0.189;SOR=1.609;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr1	243481431	rs2783972	A	G	6835.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.28;DB;DP=124;ExcessHet=3.9794;FS=0.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=1.16;SOR=0.761;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3721,372,0
chr1	243481556	rs2636323	C	G	1550.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.807e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=0.858;SOR=2.024;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:823,60,0
chr1	243493484	rs2636324	C	T	698.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=13;ExcessHet=6.9897;FS=5.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.355;SOR=0.207;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:125,0,287
chr1	243579112	rs10927011	G	A	1455.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.035;DB;DP=30;ExcessHet=1.5490;FS=1.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=1.14;SOR=0.941;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1029,90,0
chr1	243581415	rs200070484	T	G	279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.520e-01;DB;DP=27;ExcessHet=3.0103;FS=1.792;MQ=60.00;MQRankSum=0.00;QD=10.34;ReadPosRankSum=0.346;SOR=0.346;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:288,0,462
chr1	243709071	rs1473466	G	A	633.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.45;SOR=5.670;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr1	243736210	rs66631932	CT	C	204.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.750e-01;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.18;ReadPosRankSum=0.135;SOR=0.551;VQSLOD=5.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:14:87:87,0,178
chr1	244527857	rs10927214	T	C	883.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DB;DP=23;ExcessHet=3.9794;FS=2.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-8.320e-01;SOR=1.270;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:376,0,313
chr1	244528127	rs9782996	T	C	3687.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=2.882;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1022,81,0
chr1	244583801	rs11434001	T	TA	587.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=5.549;VQSLOD=6.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr1	244600913	rs148629263	C	T	94.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:88:103,0,88
chr1	244601152	rs3127465	C	T	4887.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=1.386;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1601,153,0
chr1	244612984	rs3003211	T	C	768.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DB;DP=17;ExcessHet=1.5490;FS=5.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=0.469;SOR=3.126;VQSLOD=18.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:278,0,280
chr1	244624635	rs3006006	G	C	496.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.810;SOR=0.582;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:307,0,334
chr1	244624887	rs3124058	T	C	1694.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=62;ExcessHet=3.9794;FS=3.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=0.302;SOR=1.088;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,40:62:99:1244,0,576
chr1	244715411	rs3003218	G	C	444.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=-4.310e-01;SOR=2.049;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:152,12,0
chr1	244715439	rs3003217	T	C	600.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.006e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=0.00;SOR=2.531;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr1	244723920	rs7522899	C	G	408.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=0.728;SOR=0.892;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:417,0,119
chr1	244724092	rs7544794	G	A	1359.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=84;ExcessHet=3.0103;FS=2.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-1.726e+00;SOR=1.041;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,47:84:99:1368,0,864
chr1	244724550	rs12217134	G	A	95.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:104,0,70
chr1	244735556	rs4290045	G	C	1257.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=6.932;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:366,27,0
chr1	244735858	rs10927267	A	G	966.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DB;DP=92;ExcessHet=3.0103;FS=5.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-2.750e-01;SOR=1.251;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,37:92:99:975,0,1533
chr1	244747051	rs6429486	G	C	61.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=1.28;SOR=0.446;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,119
chr1	244747150	rs6429487	G	A	585.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-02;DB;DP=40;ExcessHet=3.0103;FS=1.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.47;SOR=0.970;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:594,0,361
chr1	244747293	rs6429488	C	T	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=35;ExcessHet=3.0103;FS=1.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=0.942;SOR=1.186;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,17:35:99:0|1:244747293_C_T:660,0,668:244747293
chr1	244747294	rs6429489	G	A	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DB;DP=30;ExcessHet=3.0103;FS=1.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=-3.560e-01;SOR=1.085;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,17:30:99:0|1:244747293_C_T:660,0,668:244747293
chr1	244747339	rs6429490	G	A	146.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-7.230e-01;SOR=0.148;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:155,0,138
chr1	244754961	rs41269387	C	A	1199.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e+00;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-6.050e-01;SOR=0.796;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,47:94:99:1208,0,1340
chr1	244755325	rs35327273	AT	A	1201.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=0.568;SOR=1.569;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:86:208,0,86
chr1	244773784	rs6698173	T	C	4552.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.32;SOR=2.573;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1468,111,0
chr1	244773803	rs6698180	T	C	3158.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.739e+00;DB;DP=28;ExcessHet=3.0103;FS=7.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=0.172;SOR=0.112;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:449,0,276
chr1	244773862	rs6698264	T	C	749.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.84;ReadPosRankSum=0.700;SOR=3.098;VQSLOD=19.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:164,0,137
chr1	244773923	rs6658178	G	T	256.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=4.174;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr1	244803014	rs2653155	C	T	1190.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=23.29;SOR=5.136;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:21:1|1:244803014_C_T:305,21,0:244803014
chr1	244803025	rs2819015	C	T	1268.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=5.353;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:244803014_C_T:383,27,0:244803014
chr1	244803205	rs60280231	CTT	C,CT	8406.05	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.290e-01;DB;DP=80;ExcessHet=3.0103;FS=1.819;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=1.71;SOR=0.780;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,9,63:80:49:1729,1362,1454,203,0,49
chr1	245025697	rs11419280	T	TA	1049.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.660e-01;DB;DP=31;ExcessHet=6.9897;FS=1.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=1.68;SOR=0.495;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,16:31:96:287,0,96
chr1	245027349	rs6675421	C	T	9076.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891e+00;DB;DP=289;ExcessHet=6.9897;FS=0.533;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.32;SOR=0.610;VQSLOD=6.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:158,131:289:99:3122,0,3900
chr1	245133489	rs7545078	T	G	1579.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=52;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-5.930e-01;SOR=0.678;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,22:52:99:579,0,721
chr1	245133539	rs7542813	A	G	5579.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=59.99;QD=31.56;SOR=1.712;VQSLOD=2.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1800,138,0
chr1	245133549	rs10536649	GGC	G	1860.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268e+00;DB;DP=38;ExcessHet=6.9897;FS=0.816;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=0.582;SOR=0.837;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,16:38:99:558,0,796
chr1	245133623	rs145835471	T	TCCTCC	3658.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=55;ExcessHet=6.9897;FS=0.537;MQ=60.00;MQRankSum=0.00;QD=18.20;ReadPosRankSum=-4.590e-01;SOR=0.740;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,29:55:99:1139,0,1005
chr1	245133662	rs61844237	G	C	2135.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.539;SOR=0.730;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,30:69:99:843,0,1128
chr1	245133940	.	TCCGCCCCGCCCCGCCCCGCCTCTCTCCC	T	330.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.40;ReadPosRankSum=0.967;SOR=3.056;VQSLOD=4.59;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:81:0|1:245133940_TCCGCCCCGCCCCGCCCCGCCTCTCTCCC_T:81,0,231:245133940
chr1	245133992	rs113845109	C	G	77.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.64;SOR=2.303;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:245133940_TCCGCCCCGCCCCGCCCCGCCTCTCTCCC_T:90,6,0:245133940
chr1	245179011	rs201488109	CA	C	889.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=28;ExcessHet=3.9794;FS=4.855;MQ=60.00;MQRankSum=0.00;QD=13.69;ReadPosRankSum=0.805;SOR=1.298;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:28:82:615,82,0
chr1	245179171	rs1196365	C	T	2295.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.533e+00;DB;DP=25;ExcessHet=3.9794;FS=4.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=0.157;SOR=0.301;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:245179171_C_T:1092,75,0:245179171
chr1	245179188	rs1196366	G	T	2679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.000e-02;DB;DP=22;ExcessHet=3.0103;FS=6.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.36;ReadPosRankSum=-1.780e+00;SOR=0.162;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:245179171_C_T:990,66,0:245179171
chr1	245222634	rs694793	C	G	2522.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.455e+00;DB;DP=29;ExcessHet=3.0103;FS=1.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=-6.910e-01;SOR=0.495;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:955,87,0
chr1	245222839	rs579269	G	T	4055.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=2.322;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:847,78,0
chr1	245247180	rs10754849	G	A	226.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=-8.420e-01;SOR=1.085;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr1	245285197	rs113816497	C	CTTATT	161.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.20;SOR=3.258;VQSLOD=3.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:11:178,11,0
chr1	245285303	rs10927398	A	C	158.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.328;SOR=0.892;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr1	245318688	rs12409851	C	T	2793.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DB;DP=126;ExcessHet=3.9794;FS=1.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=1.51;SOR=0.800;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,51:126:99:1203,0,1932
chr1	245703990	rs9919234	G	T	5024.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.700e-02;DB;DP=80;ExcessHet=3.9794;FS=4.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=0.424;SOR=0.963;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2473,240,0
chr1	245765719	rs1771526	C	G	1515.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.87;SOR=7.168;VQSLOD=23.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:300,21,0
chr1	245772370	rs1771524	G	A	198.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.08;SOR=0.693;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
chr1	245772529	rs7555351	A	G	1225.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.06;DB;DP=60;ExcessHet=3.9794;FS=5.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.816;SOR=1.229;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,23:60:99:561,0,891
chr1	245772651	rs61754955	C	G	1478.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.420e-01;DB;DP=110;ExcessHet=3.0103;FS=1.517;MQ=59.86;MQRankSum=-9.120e-01;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-3.180e-01;SOR=0.549;VQSLOD=1.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,59:110:99:1487,0,1205
chr1	245772692	rs61755865	A	C	1269.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160e+00;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=-9.740e-01;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-7.190e-01;SOR=0.660;VQSLOD=1.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:57,58:115:99:1278,0,1325
chr1	245774964	rs10802225	A	G	620.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.294e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.87;ReadPosRankSum=0.101;SOR=2.124;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
chr1	245774979	rs10754457	C	T	875.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.20;ReadPosRankSum=0.00;SOR=2.546;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:482,36,0
chr1	245774993	rs10754458	A	G	1009.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.79;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=-5.920e-01;SOR=2.448;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:543,39,0
chr1	245775356	rs376770702	TTGTGTG	T	611.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.050e-01;DB;DP=17;ExcessHet=6.9897;FS=3.245;MQ=57.99;MQRankSum=-9.580e-01;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-1.181e+00;SOR=0.174;VQSLOD=0.641;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,5:17:99:123,0,567
chr1	245775395	.	TGTGTGTGTGTGTGAGA	T	371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146e+00;DP=21;ExcessHet=3.0103;FS=0.000;MQ=56.37;MQRankSum=0.332;QD=17.68;ReadPosRankSum=0.870;SOR=0.610;VQSLOD=0.632;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:21:99:380,0,462
chr1	245850095	rs871840	C	T	18250.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=742;ExcessHet=3.9794;FS=0.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=1.78;SOR=0.633;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:388,354:742:99:8399,0,9268
chr1	245851304	rs6701084	A	G	28654.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=293;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=0.911;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,293:293:99:8928,877,0
chr1	245861571	rs3205034	C	T	3531.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=64;ExcessHet=3.9794;FS=3.775;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=-5.350e-01;SOR=1.133;VQSLOD=7.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2049,191,0
chr1	246021941	rs2362587	T	C	4771.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=97;ExcessHet=1.5490;FS=0.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=-2.200e-02;SOR=0.611;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,48:97:99:1341,0,1116
chr1	246022071	rs2185370	C	T	2341.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DB;DP=42;ExcessHet=1.5490;FS=5.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=2.25;SOR=1.665;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,29:42:99:885,0,316
chr1	246022159	rs2185369	G	A	1463.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.33;SOR=3.967;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:297,24,0
chr1	246022199	rs34751188	T	C	79.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:88,0,64
chr1	246026881	rs9730425	G	A	595.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=-1.383e+00;SOR=3.258;VQSLOD=18.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:72,0,62
chr1	246026947	rs9727434	A	G	1305.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.957e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.85;ReadPosRankSum=0.711;SOR=3.664;VQSLOD=16.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:255,0,162
chr1	246027024	rs12123124	A	G	3639.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=54;ExcessHet=1.5490;FS=3.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=-1.298e+00;SOR=1.139;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,24:54:99:0|1:246027024_A_G:866,0,1187:246027024
chr1	246027029	rs61830203	A	T	3841.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410e-01;DB;DP=53;ExcessHet=1.5490;FS=1.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=-1.320e+00;SOR=0.999;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,23:53:99:0|1:246027024_A_G:888,0,1184:246027024
chr1	246027034	rs2153404	G	C	7467.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=1.981;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2100,171,0
chr1	246091115	rs2275313	C	G	320.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.970e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=-2.310e-01;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr1	246091457	rs6669768	T	C	3047.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.73;SOR=1.849;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1231,117,0
chr1	246091515	rs2275318	C	T	2155.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.54;ReadPosRankSum=0.985;SOR=0.498;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:246091515_C_T:1113,75,0:246091515
chr1	246091531	rs6669866	T	C	2463.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=3.651;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:75:1|1:246091515_C_T:1097,75,0:246091515
chr1	246093465	rs11295264	GA	G	1742.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.880e-01;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.843;SOR=0.661;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,23:26:15:523,15,0
chr1	246110573	rs10802300	A	G	2086.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.54;DB;DP=41;ExcessHet=1.5490;FS=0.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.113;SOR=0.539;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1409,122,0
chr1	246489706	rs57404221	GA	G	5339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.25;SOR=1.191;VQSLOD=5.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1815,192,0
chr1	246489909	rs34267143	A	AT	602.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.34;SOR=4.174;VQSLOD=6.37;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,6:6:18:212,18,0
chr1	246490438	rs3737245	T	C	6617.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.96;SOR=2.160;VQSLOD=18.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:246490438_T_C:1791,120,0:246490438
chr1	246490442	rs3737246	A	G	7034.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.35;SOR=1.949;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:246490438_T_C:1800,120,0:246490438
chr1	246490452	rs3737247	G	A	7762.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.69;SOR=1.663;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,43:43:99:1|1:246490438_T_C:1890,132,0:246490438
chr1	246498866	rs10159376	A	C	4107.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=3.912;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:990,75,0
chr1	246518087	rs2027371	G	A	188.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=3.611;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr1	246670140	rs3831943	T	TC	826.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=6.518;VQSLOD=5.72;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:167,15,0
chr1	246670281	rs6671418	G	C	3364.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.63;QD=33.65;SOR=1.408;VQSLOD=2.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:94:1058,94,0
chr1	246670333	rs6426303	A	G	8631.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=0.849;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2876,240,0
chr1	246670481	rs7520453	C	G	16183.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=1.087;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,200:200:99:5905,599,0
chr1	246670626	rs3841811	A	AGGGGC	1999.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=7.701;VQSLOD=7.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:45:674,45,0
chr1	246708165	rs7527607	C	T	1348.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=39.82;SOR=4.804;VQSLOD=19.90;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,13:13:39:522,39,0
chr1	246708207	rs112110367	A	AAG	886.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.73;SOR=3.716;VQSLOD=4.93;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:246708207_A_AAG:405,27,0:246708207
chr1	246708209	rs200612484	GCC	G	886.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.34;SOR=3.500;VQSLOD=4.49;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:27:1|1:246708207_A_AAG:405,27,0:246708207
chr1	246711816	rs5782396	GA	G	1839.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.87;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=1.78;SOR=0.709;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:580,54,0
chr1	246712033	rs1890160	A	G	1812.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.53;SOR=4.804;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:286,24,0
chr1	246714426	rs12140400	A	G	231.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.842;SOR=1.085;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr1	246714587	rs10754526	G	A	1793.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=38;ExcessHet=3.9794;FS=1.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.815;SOR=0.552;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1103,114,0
chr1	246714631	rs80342781	T	A	2075.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.587;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.35;ReadPosRankSum=1.26;SOR=0.754;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:87:1|1:246714631_T_A:1285,87,0:246714631
chr1	246714632	rs75477023	G	A	2075.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.730;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.76;ReadPosRankSum=1.16;SOR=0.781;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,28:28:87:1|1:246714631_T_A:1285,87,0:246714631
chr1	246714636	rs34850511	T	A	1978.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.18;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:81:1|1:246714631_T_A:1215,81,0:246714631
chr1	246714728	rs9426201	G	A	571.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.800e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-6.450e-01;SOR=0.693;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:368,30,0
chr1	246720174	rs3120710	A	G	1192.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=5.353;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr1	246720798	rs3124071	G	A	5142.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=0.756;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1537,153,0
chr1	246727558	rs3120713	G	T	3042.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=2.147;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:864,78,0
chr1	246754778	rs35302997	G	GA	1461.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375e+00;DB;DP=24;ExcessHet=6.9897;FS=8.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=-1.676e+00;SOR=0.126;VQSLOD=4.80;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,16:24:99:433,0,189
chr1	246755124	rs6702823	T	C	4237.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=1.554;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1149,111,0
chr1	246785113	rs6699673	A	C	605.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.437;SOR=0.752;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:186,0,175
chr1	246794947	rs6701256	G	A	224.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.11;ReadPosRankSum=-9.670e-01;SOR=2.584;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:76,0,35
chr1	246797710	rs35650980	G	T	1623.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.120e-01;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.82;ReadPosRankSum=-2.280e-01;SOR=0.826;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,11:20:99:0|1:246797710_G_T:435,0,542:246797710
chr1	246797714	rs11396823	G	GT	1657.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.880e-01;DB;DP=21;ExcessHet=6.9897;FS=1.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=-4.980e-01;SOR=0.892;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,12:21:99:0|1:246797710_G_T:462,0,539:246797710
chr1	246797974	rs6680646	T	A	1430.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=32;ExcessHet=6.9897;FS=3.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-5.340e-01;SOR=0.361;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:543,0,370
chr1	246798049	rs35037617	G	A	683.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008e+00;DB;DP=10;ExcessHet=6.9897;FS=3.378;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.880;SOR=1.961;VQSLOD=3.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:183,0,138
chr1	246804824	rs12401692	T	C	1084.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DB;DP=14;ExcessHet=6.9897;FS=4.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-8.160e-01;SOR=0.285;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:175,0,251
chr1	246805434	.	GGT	G	67.96	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.98;SOR=2.303;VQSLOD=4.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	246823857	rs7534740	G	A	305.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=1.15;SOR=0.693;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:110,0,26
chr1	246903654	rs3007322	G	C	243.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-3.480e-01;SOR=0.627;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:252,0,347
chr1	246922124	rs12135184	G	T	846.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=1.23;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.207;SOR=0.324;VQSLOD=2.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:236,0,216
chr1	246929483	rs12144408	A	G	633.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;DB;DP=45;ExcessHet=3.0103;FS=2.893;MQ=59.91;MQRankSum=-9.340e-01;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-1.431e+00;SOR=0.301;VQSLOD=1.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,23:45:99:642,0,542
chr1	246939610	rs3838991	A	ATATT	3562.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=85;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.787;SOR=0.687;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,38:85:99:1493,0,2274
chr1	246939856	rs3795465	G	A	2251.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=84;ExcessHet=3.9794;FS=0.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=1.30;SOR=0.743;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,31:84:99:832,0,1437
chr1	246939943	rs6685364	T	C	1233.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442e+00;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-1.000e-02;SOR=0.695;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,45:81:99:1242,0,1061
chr1	246940179	rs3795464	G	A	2060.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=108;ExcessHet=3.0103;FS=6.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=1.13;SOR=1.292;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:56,52:108:99:0|1:246940179_G_A:2069,0,3277:246940179
chr1	246940182	rs3795463	C	A	2082.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762e+00;DB;DP=111;ExcessHet=3.0103;FS=4.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=0.670;SOR=1.172;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:56,55:111:99:0|1:246940179_G_A:2091,0,3274:246940179
chr1	246940442	rs3795462	T	C	812.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.525e+00;DB;DP=23;ExcessHet=3.9794;FS=0.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.886;SOR=0.880;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:348,0,337
chr1	246943547	rs41267531	A	C	880.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=27;ExcessHet=3.9794;FS=1.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-2.190e-01;SOR=0.964;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:366,0,317
chr1	247004392	rs12031687	C	T	326.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.830e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.692;SOR=0.693;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:335,0,330
chr1	247006051	rs12410563	G	C	381.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.860e-01;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.648;SOR=0.657;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:390,0,500
chr1	247006160	rs5021094	G	T	2306.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=-2.070e-01;SOR=0.672;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:833,81,0
chr1	247006169	rs34402133	A	ACTG	261.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.646;SOR=0.784;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,8:23:99:270,0,586
chr1	247007042	rs71680437	TA	T	127.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.42;SOR=3.611;VQSLOD=4.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chr1	247016787	rs9783081	G	A	4620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.685e+00;DB;DP=38;ExcessHet=3.0103;FS=1.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=0.209;SOR=0.516;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1263,114,0
chr1	247021266	rs111386980	C	CTTCT,CTTCTT	626.60	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.90;SOR=5.549;VQSLOD=5.07;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,3,2:5:34:244,52,34,81,0,63
chr1	247025207	rs61853995	G	A	224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.381e+00;DB;DP=35;ExcessHet=3.0103;FS=1.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=0.444;SOR=0.385;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,13:35:99:233,0,705
chr1	247025531	rs55727006	C	T	497.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870e-01;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=59.64;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.113;SOR=0.911;VQSLOD=4.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,9:30:99:185,0,561
chr1	247031204	.	CA	C	517.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.46;ReadPosRankSum=0.226;SOR=1.931;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:0,3:8:8:152,0,8
chr1	247031206	.	CACA	C	342.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275e+00;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.01;ReadPosRankSum=0.226;SOR=1.329;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:8:55:151,0,55
chr1	247031237	rs2800222	C	G	423.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.51;ReadPosRankSum=6.000e-03;SOR=1.493;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr1	247048834	rs2642990	T	C	1009.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.60;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=52.86;MQRankSum=-1.622e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=-2.850e-01;SOR=0.622;VQSLOD=-9.406e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:338,24,0
chr1	247054530	rs1472275	T	C	859.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=0.542;SOR=0.536;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:489,39,0
chr1	247055427	rs2800219	C	A	544.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.640e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=-1.902e+00;SOR=1.358;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:244,21,0
chr1	247055446	rs61854021	A	G	171.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-8.420e-01;SOR=0.340;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:73,0,32
chr1	247061466	rs12023594	C	T	145.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=3.258;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr1	247067119	rs11585265	G	A	114.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.14;ReadPosRankSum=1.25;SOR=0.188;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:123,0,321
chr1	247067139	.	CAA	C,CA	1535.06	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.690e-01;DP=36;ExcessHet=3.0103;FS=0.000;MQ=59.72;MQRankSum=0.00;QD=13.01;ReadPosRankSum=-5.040e-01;SOR=0.794;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,9,22:36:92:594,343,560,92,0,105
chr1	247067492	rs34554106	AG	A	569.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-3.280e-01;SOR=0.593;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:28:109,0,28
chr1	247091604	.	CAA	C,CA	743.72	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.730e-01;DP=29;ExcessHet=3.0103;FS=7.967;MQ=59.17;MQRankSum=-8.330e-01;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=-3.910e-01;SOR=1.746;VQSLOD=0.156;culprit=FS	GT:AD:DP:GQ:PL	1/2:8,7,10:29:28:253,35,247,28,0,83
chr1	247091897	rs2800215	A	G	384.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.49;ReadPosRankSum=0.210;SOR=1.765;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr1	247094780	.	CCCGCCG	C	336.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.65;ReadPosRankSum=0.967;SOR=0.569;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:23:82,0,23
chr1	247109014	rs2642982	G	C	1007.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=24;ExcessHet=3.9794;FS=1.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=1.06;SOR=1.038;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:298,0,371
chr1	247109267	rs2642983	A	C	5972.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=108;ExcessHet=3.9794;FS=6.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=0.409;SOR=1.037;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,46:108:99:0|1:247109267_A_C:1570,0,4592:247109267
chr1	247109291	rs111328919	CG	C	5013.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=0.903;SOR=0.725;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,34:78:99:0|1:247109267_A_C:1297,0,4189:247109267
chr1	247109296	rs41267541	A	G	4809.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.28;ReadPosRankSum=1.08;SOR=0.727;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,33:74:99:0|1:247109267_A_C:1281,0,4109:247109267
chr1	247109408	rs2818886	G	A	541.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.430e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.633;SOR=0.588;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:164,0,209
chr1	247129945	rs1779985	A	G	1442.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.13;ReadPosRankSum=-1.068e+00;SOR=3.611;VQSLOD=17.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:58:200,0,58
chr1	247130577	rs4971282	C	A	375.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=8;ExcessHet=3.9794;FS=7.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-1.415e+00;SOR=3.056;VQSLOD=16.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,115
chr1	247143029	rs140208249	GTTAGT	G	196.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.94;SOR=1.981;VQSLOD=6.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr1	247143092	rs7516037	T	A	409.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=1.609;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:426,39,0
chr1	247143130	rs10802455	G	A	656.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.89;SOR=1.863;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:673,54,0
chr1	247143268	rs10924880	T	C	439.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.36;SOR=1.765;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:456,42,0
chr1	247143308	rs35891597	TA	T	88.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=57.15;POSITIVE_TRAIN_SITE;QD=22.14;SOR=3.258;VQSLOD=5.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:105,12,0
chr1	247143365	rs12030055	C	T	66.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=50.99;POSITIVE_TRAIN_SITE;QD=33.15;SOR=2.303;VQSLOD=2.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr1	247150740	rs3749427	T	C	3190.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.68;SOR=1.216;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3207,276,0
chr1	247151557	rs2642992	A	G	1934.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.24;SOR=2.522;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1951,165,0
chr1	247162658	rs2642973	C	T	26556.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.296e+00;DB;DP=342;ExcessHet=3.0103;FS=0.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-9.570e-01;SOR=0.790;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,342:342:99:10288,1019,0
chr1	247163187	rs2818870	T	C	3866.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.248e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=1.58;SOR=0.715;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1274,108,0
chr1	247266934	.	CAAAA	C	80.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.36;SOR=0.693;VQSLOD=4.35;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	247419509	rs1778540	T	C	6535.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=1.234;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3003,296,0
chr1	247419664	rs1778541	C	T	7454.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.27;SOR=1.018;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2549,234,0
chr1	247420421	rs41308154	C	T	439.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DB;DP=28;ExcessHet=3.0103;FS=2.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-4.380e-01;SOR=0.223;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:448,0,371
chr1	247467672	rs146250749	ATT	A	264.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=4;ExcessHet=3.9794;FS=6.690;MQ=60.00;MQRankSum=0.00;QD=29.43;ReadPosRankSum=1.28;SOR=4.174;VQSLOD=2.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:137,12,0
chr1	247471561	rs9426182	C	T	101.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:109,0,69
chr1	247485932	rs10924984	A	G	2629.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=28;ExcessHet=3.0103;FS=1.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=0.744;SOR=1.074;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,27:28:59:894,59,0
chr1	247486421	rs6692645	G	C	1353.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182e+00;DB;DP=30;ExcessHet=6.9897;FS=2.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.042;SOR=1.059;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:431,0,477
chr1	247486678	rs7540329	T	C	925.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323e+00;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-6.010e-01;SOR=0.641;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,14:39:99:339,0,740
chr1	247486736	rs6426239	C	T	1012.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=23;ExcessHet=3.9794;FS=1.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=-6.600e-02;SOR=1.059;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,16:23:99:517,0,171
chr1	247493031	rs6674425	C	G	415.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=10;ExcessHet=1.5490;FS=5.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.70;ReadPosRankSum=1.04;SOR=3.611;VQSLOD=15.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,9:10:4:318,4,0
chr1	247582461	rs368835809	TATA	T	119.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.14;SOR=2.833;VQSLOD=4.06;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:247582461_TATA_T:135,9,0:247582461
chr1	247582466	rs4998423	A	T	144.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=11.13;SOR=2.147;VQSLOD=9.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:247582461_TATA_T:135,9,0:247582461
chr1	247586336	rs3806265	T	C	462.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=14;ExcessHet=3.9794;FS=2.431;MQ=59.51;MQRankSum=0.566;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-9.440e-01;SOR=0.216;VQSLOD=0.762;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:178,0,267
chr1	247587477	rs3806268	G	A	6420.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.27;DB;DP=242;ExcessHet=3.9794;FS=2.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-4.130e-01;SOR=0.539;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:125,117:242:99:2914,0,3144
chr1	247587531	rs4925543	A	G	22841.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=203;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=0.891;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,203:203:99:6775,610,0
chr1	247587657	.	C	T	2359.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.74;DP=162;ExcessHet=3.0103;FS=6.175;MQ=60.00;MQRankSum=0.00;QD=14.56;ReadPosRankSum=0.536;SOR=1.166;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,78:162:99:2368,0,2267
chr1	247597329	rs12124866	C	T	2219.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.68;SOR=7.864;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:247597329_C_T:264,18,0:247597329
chr1	247597364	.	G	GAT	2692.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.247e+00;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=36.81;ReadPosRankSum=-2.667e+00;SOR=1.567;VQSLOD=4.26;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:87:1|1:247597329_C_T:1232,87,0:247597329
chr1	247597365	rs10925022	G	GTGTTCTGAGGCCTTCTCTATTCCAGAGCTCTCTGGTCAGA	4812.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.35;SOR=8.051;VQSLOD=6.40;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:87:1|1:247597329_C_T:1232,87,0:247597329
chr1	247597656	rs3835304	TG	T	2988.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.710e-01;DB;DP=49;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=0.420;SOR=0.801;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,24:49:99:679,0,674
chr1	247599232	rs10754557	G	A	715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224e+00;DB;DP=18;ExcessHet=3.9794;FS=2.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=1.70;SOR=1.688;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:328,0,254
chr1	247607052	rs10159239	G	A	210.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;DB;DP=3;ExcessHet=1.5490;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=-5.980e-01;SOR=3.126;VQSLOD=18.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr1	247611570	.	CT	C	1085.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.14;MQRankSum=0.00;QD=17.22;ReadPosRankSum=-3.100e-01;SOR=0.631;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:133,0,104
chr1	247611659	rs201053423	CAG	C	1084.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e-01;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-8.690e-01;SOR=0.749;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,29:70:99:1093,0,1629
chr1	247614617	rs4925663	C	T	8270.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.886e+00;DB;DP=197;ExcessHet=1.5490;FS=4.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=-5.000e-01;SOR=0.972;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,197:197:99:6231,591,0
chr1	247614693	rs6695302	C	T	19961.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=0.813;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,222:222:99:7194,664,0
chr1	247615261	rs35305980	GA	G	7438.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.270e-01;DB;DP=89;ExcessHet=3.9794;FS=4.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=0.038;SOR=0.494;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3347,268,0
chr1	247615470	rs4269805	T	C	1085.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.756;SOR=0.773;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:411,33,0
chr1	247694949	rs6702693	G	C	2113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.510e-01;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=-1.260e-01;SOR=0.640;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:71,56:127:99:0|1:247694949_G_C:2122,0,4309:247694949
chr1	247694958	rs6702695	G	A	2149.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.891e+00;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-6.020e-01;SOR=0.713;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:71,57:128:99:0|1:247694949_G_C:2158,0,4357:247694949
chr1	247695612	rs6657127	G	A	11899.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=1.195;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3488,300,0
chr1	247695756	rs6697472	T	C	6000.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DB;DP=67;ExcessHet=3.0103;FS=2.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=0.844;SOR=0.891;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2175,201,0
chr1	247695958	rs6697675	T	C	532.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=0.366;SOR=0.776;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:178,12,0
chr1	247719377	rs3862182	T	C	68.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.22;SOR=2.303;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr1	247726680	rs55726783	C	A	305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.641;SOR=0.465;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:314,0,394
chr1	247726822	rs142922665	CTTTT	C	3864.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.660e-01;DB;DP=101;ExcessHet=3.9794;FS=0.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.989;SOR=0.649;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,37:101:99:1341,0,3158
chr1	247728962	rs1151694	C	T	754.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=0.414;SOR=1.284;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:97:97,0,187
chr1	247729206	rs367904043	CT	C	321.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DB;DP=44;ExcessHet=6.9897;FS=7.908;MQ=59.89;MQRankSum=0.00;QD=2.78;ReadPosRankSum=-2.680e-01;SOR=0.274;VQSLOD=3.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,10:44:99:116,0,624
chr1	247752019	rs1151687	G	C	11752.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=173;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=-7.430e-01;SOR=0.735;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,95:173:99:2915,0,1960
chr1	247752109	rs61732336	A	G	2191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=240;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=-1.194e+00;SOR=0.682;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,88:240:99:2200,0,3805
chr1	247752367	rs869111	A	G	2640.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210e-01;DB;DP=120;ExcessHet=3.9794;FS=6.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.127;SOR=1.109;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,53:120:99:1328,0,1924
chr1	247752650	rs35280339	AT	A	637.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.850e-01;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.23;ReadPosRankSum=0.303;SOR=0.573;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:226,0,225
chr1	247768736	rs369542372	AGTGAAAAATGAATAGTTTAGG	A	731.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=17;ExcessHet=3.9794;FS=2.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.925;SOR=1.232;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:355,0,1505
chr1	247769592	rs1151683	C	T	3937.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=139;ExcessHet=3.9794;FS=1.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.085;SOR=0.770;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,65:139:99:1677,0,1916
chr1	247835352	rs1151641	C	T	1402.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=5.728;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:411,30,0
chr1	247835674	rs28446289	G	A	5604.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;DB;DP=164;ExcessHet=6.9897;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.08;SOR=0.829;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,88:164:99:2222,0,1822
chr1	247835908	rs28556931	T	A	4455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=104;ExcessHet=6.9897;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.329e+00;SOR=0.914;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,48:104:99:1349,0,1393
chr1	247835950	rs1151640	T	C	4173.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DB;DP=89;ExcessHet=6.9897;FS=0.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-3.300e-02;SOR=0.616;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,47:89:99:1222,0,1088
chr1	247836008	rs28555391	G	A	2780.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603e+00;DB;DP=56;ExcessHet=6.9897;FS=2.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.271;SOR=0.856;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:727,0,815
chr1	247836207	rs28711149	T	A	2924.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.430e-01;DB;DP=75;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.378;SOR=0.691;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:794,0,1123
chr1	247921100	rs1552812	T	G	6207.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.389e+00;DB;DP=75;ExcessHet=3.0103;FS=0.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=0.855;SOR=0.625;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2395,224,0
chr1	247921352	rs1552813	C	T	5526.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.14;DB;DP=68;ExcessHet=3.0103;FS=0.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-5.810e-01;SOR=0.619;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2239,204,0
chr1	247921717	rs10888359	C	A	2897.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.701e+00;DB;DP=34;ExcessHet=3.0103;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=1.15;SOR=1.047;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1181,102,0
chr1	247921789	rs147960387	A	AGT	376.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=5;ExcessHet=3.0103;FS=5.563;MQ=60.00;MQRankSum=0.00;QD=20.94;ReadPosRankSum=1.07;SOR=3.477;VQSLOD=3.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:146,15,0
chr1	247921888	rs965975	C	T	394.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=3.611;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:127,12,0
chr1	247978087	rs10888248	G	A	3458.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=2.350;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:889,78,0
chr1	247978319	rs6695283	A	G	11567.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=0.805;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3770,354,0
chr1	247978541	rs35979231	AAGG	A	8047.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.940e-01;DB;DP=78;ExcessHet=3.0103;FS=3.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.06;ReadPosRankSum=0.690;SOR=0.505;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3484,235,0
chr1	247978996	rs10888249	A	G	4024.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.26;SOR=1.052;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1094,102,0
chr1	248004296	rs6681483	A	G	2283.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.976;SOR=0.665;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,30:57:99:841,0,662
chr1	248004614	rs6667389	G	A	5018.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=108;ExcessHet=3.9794;FS=14.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=-8.000e-01;SOR=1.338;VQSLOD=13.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,46:108:99:1272,0,1561
chr1	248004687	rs10888255	C	G	7986.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DB;DP=154;ExcessHet=3.9794;FS=1.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-5.000e-02;SOR=0.866;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,74:154:99:1868,0,1957
chr1	248004775	rs10888256	C	T	8669.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.318e+00;DB;DP=160;ExcessHet=3.9794;FS=2.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=0.966;SOR=0.531;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,85:160:99:2174,0,2008
chr1	248004848	rs4607924	G	C	7355.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=126;ExcessHet=3.9794;FS=7.638;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=1.20;SOR=0.420;VQSLOD=6.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,70:126:99:2016,0,1488
chr1	248004877	rs10888257	C	T	7942.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=106;ExcessHet=3.9794;FS=0.423;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=1.90;SOR=0.659;VQSLOD=6.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,60:106:99:0|1:248004877_C_T:2394,0,1865:248004877
chr1	248004884	rs1339845	T	C	11698.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.85;ReadPosRankSum=-3.720e-01;SOR=0.661;VQSLOD=6.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,58:102:99:0|1:248004877_C_T:2359,0,1836:248004877
chr1	248005213	rs7522811	G	C	3727.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DB;DP=69;ExcessHet=3.9794;FS=1.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=1.46;SOR=0.600;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:783,0,944
chr1	248020448	rs10749636	G	A	1386.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.57;DB;DP=14;ExcessHet=3.0103;FS=6.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.51;ReadPosRankSum=0.770;SOR=0.197;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:457,42,0
chr1	248020526	rs142390236	C	A	672.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.270e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=-2.520e-01;SOR=0.482;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:681,0,644
chr1	248020556	rs11204523	G	C	4606.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.779e+00;DB;DP=64;ExcessHet=3.0103;FS=1.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=1.08;SOR=0.533;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2147,192,0
chr1	248039294	rs1339847	G	A	2195.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357e+00;DB;DP=194;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-3.210e-01;SOR=0.735;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,97:194:99:2204,0,2487
chr1	248039713	rs3811445	A	G	6675.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.114e+00;DB;DP=81;ExcessHet=3.0103;FS=5.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=-6.020e-01;SOR=0.344;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2599,243,0
chr1	248040018	rs4925574	A	G	137.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr1	248058755	rs1337876	A	G	1906.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.53;SOR=7.614;VQSLOD=24.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:635,45,0
chr1	248058797	rs1856248	T	G	3512.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.55;SOR=6.043;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:793,60,0
chr1	248058845	rs4500353	A	C	6844.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=0.221;SOR=1.387;VQSLOD=6.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1763,141,0
chr1	248058879	rs6587387	A	T	10498.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=1.954;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2888,258,0
chr1	248058983	rs148037186	T	G	1875.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=183;ExcessHet=3.0103;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-2.490e-01;SOR=0.638;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,80:183:99:1884,0,2592
chr1	248059423	rs10888267	C	T	13030.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;DB;DP=223;ExcessHet=3.9794;FS=0.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=1.76;SOR=0.607;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,106:223:99:2758,0,3040
chr1	248059456	rs12135078	G	A	12655.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=201;ExcessHet=3.9794;FS=0.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=1.17;SOR=0.649;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,98:201:99:2538,0,2753
chr1	248059476	rs12139390	A	C	12560.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DB;DP=210;ExcessHet=3.9794;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=0.075;SOR=0.642;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,101:210:99:2502,0,2965
chr1	248059703	rs11204545	T	A	13195.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=158;ExcessHet=3.9794;FS=1.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.08;ReadPosRankSum=0.675;SOR=0.598;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:81,77:158:99:0|1:248059703_T_A:2933,0,4395:248059703
chr1	248059712	rs11204546	T	C	12676.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421e+00;DB;DP=153;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=0.367;SOR=0.660;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:75,78:153:99:0|1:248059703_T_A:2983,0,4172:248059703
chr1	248059856	rs10888268	T	C	4982.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=63;ExcessHet=3.9794;FS=3.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.28;ReadPosRankSum=-2.080e-01;SOR=1.018;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,38:63:99:1040,0,632
chr1	248060029	rs10732831	A	G	2489.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.58;SOR=1.885;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:705,63,0
chr1	248060140	rs150309874	ATTGTGGC	A	570.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=5.283;VQSLOD=6.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr1	248084434	rs11204563	G	A	6074.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.984;DB;DP=79;ExcessHet=3.0103;FS=1.367;MQ=51.34;MQRankSum=-3.560e-01;NEGATIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=0.681;SOR=0.553;VQSLOD=-2.774e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2374,237,0
chr1	248084464	rs11204564	T	C	6816.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=75;ExcessHet=3.0103;FS=4.619;MQ=46.43;MQRankSum=2.34;QD=31.27;ReadPosRankSum=1.93;SOR=1.433;VQSLOD=-3.638e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,73:75:99:2482,176,0
chr1	248084471	rs149623571	A	G	1037.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=71;ExcessHet=3.0103;FS=8.768;MQ=44.75;MQRankSum=0.968;QD=14.61;ReadPosRankSum=-1.954e+00;SOR=1.765;VQSLOD=-4.753e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,28:71:99:0|1:248084471_A_G:1046,0,1659:248084471
chr1	248084473	rs143274587	C	A	1037.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=69;ExcessHet=3.0103;FS=6.944;MQ=44.23;MQRankSum=1.27;QD=15.03;ReadPosRankSum=-2.647e+00;SOR=1.593;VQSLOD=-4.695e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,28:69:99:0|1:248084471_A_G:1046,0,1659:248084471
chr1	248085108	rs4625315	C	T	5728.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.002e+00;DB;DP=64;ExcessHet=3.0103;FS=18.660;MQ=51.28;MQRankSum=0.145;NEGATIVE_TRAIN_SITE;QD=25.81;ReadPosRankSum=0.105;SOR=1.947;VQSLOD=-4.370e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2122,190,0
chr1	248085341	rs4925773	T	A	4909.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.183e+00;DB;DP=56;ExcessHet=3.0103;FS=11.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=-1.221e+00;SOR=0.137;VQSLOD=17.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1890,167,0
chr1	248085409	rs4925774	T	A	123.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.420;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.819;SOR=0.527;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:132,0,159
chr1	248112627	rs4925787	T	C	17397.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.830e-01;DB;DP=295;ExcessHet=3.9794;FS=1.138;MQ=55.01;MQRankSum=0.200;NEGATIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=-5.550e-01;SOR=0.819;VQSLOD=-2.728e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,143:295:99:3440,0,3995
chr1	248112745	rs4925788	G	T	22595.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.664;DB;DP=177;ExcessHet=3.0103;FS=6.317;MQ=45.88;MQRankSum=-3.088e+00;QD=31.25;ReadPosRankSum=1.68;SOR=0.221;VQSLOD=-2.842e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:6007,530,0
chr1	248112762	rs4925789	T	C	29177.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.72;DB;DP=174;ExcessHet=3.0103;FS=3.438;MQ=47.53;MQRankSum=-2.829e+00;QD=32.29;ReadPosRankSum=2.55;SOR=0.211;VQSLOD=-2.865e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,174:174:99:1|1:248112762_T_C:7933,533,0:248112762
chr1	248112763	rs4925790	G	A	29396.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.903e+00;DB;DP=174;ExcessHet=3.0103;FS=3.438;MQ=47.62;MQRankSum=-2.697e+00;QD=30.89;ReadPosRankSum=2.67;SOR=0.228;VQSLOD=-2.873e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,174:174:99:1|1:248112762_T_C:7983,539,0:248112762
chr1	248112771	rs4925791	C	T	28915.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.554e+00;DB;DP=184;ExcessHet=3.0103;FS=6.622;MQ=48.62;MQRankSum=-1.912e+00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=3.66;SOR=0.151;VQSLOD=-1.911e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,184:184:99:1|1:248112762_T_C:8112,557,0:248112762
chr1	248112809	rs4925583	A	G	23270.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.107;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=53.29;MQRankSum=2.24;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.58;ReadPosRankSum=3.69;SOR=0.022;VQSLOD=-1.523e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,186:186:99:6192,558,0
chr1	248112836	rs4925792	A	G	22209.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MQ=56.91;POSITIVE_TRAIN_SITE;QD=33.50;SOR=0.784;VQSLOD=3.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,182:182:99:6079,547,0
chr1	248112915	rs10888280	A	G	4619.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370e-01;DB;DP=189;ExcessHet=3.9794;FS=1.178;MQ=59.60;MQRankSum=0.246;NEGATIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=2.53;SOR=0.774;VQSLOD=-1.083e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:100,89:189:99:2216,0,2696
chr1	248113026	rs10888281	T	A	13453.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=56.37;QD=32.03;SOR=1.393;VQSLOD=2.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4260,412,0
chr1	248113040	rs10888282	A	G	13416.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=56.14;QD=34.49;SOR=1.388;VQSLOD=1.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4176,378,0
chr1	248113121	rs12030937	C	A	1678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687e+00;DB;DP=70;ExcessHet=3.9794;FS=2.188;MQ=57.23;MQRankSum=0.862;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-5.140e-01;SOR=0.494;VQSLOD=-8.124e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,24:70:99:574,0,1425
chr1	248113206	rs10888283	C	G	3709.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=2.896;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:1003,86,0
chr1	248128929	rs6664332	G	A	2639.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141e+00;DB;DP=98;ExcessHet=3.9794;FS=0.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.355;SOR=0.749;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,48:98:99:1399,0,1487
chr1	248129240	rs4478844	G	A	9162.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DB;DP=116;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.16;ReadPosRankSum=0.112;SOR=0.691;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,62:116:99:1666,0,1353
chr1	248224653	.	G	C	2983.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;DP=213;ExcessHet=3.0103;FS=1.670;MQ=59.70;MQRankSum=-1.327e+00;QD=14.01;ReadPosRankSum=-7.900e-02;SOR=0.602;VQSLOD=-7.259e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:100,113:213:99:2992,0,2586
chr1	248247586	rs10788754	T	G	8281.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=93;ExcessHet=6.9897;FS=1.115;MQ=40.41;MQRankSum=-5.710e-01;QD=30.56;ReadPosRankSum=0.634;SOR=0.589;VQSLOD=-5.163e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,73:93:99:0|1:248247586_T_G:2978,0,687:248247586
chr1	248247590	rs55839802	G	A	8245.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=93;ExcessHet=6.9897;FS=2.426;MQ=41.04;MQRankSum=-1.850e-01;QD=30.65;ReadPosRankSum=0.692;SOR=0.530;VQSLOD=-4.856e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,73:93:99:0|1:248247586_T_G:2999,0,751:248247586
chr1	248247592	rs28460545	G	C	8162.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.97;DB;DP=91;ExcessHet=6.9897;FS=3.966;MQ=41.36;MQRankSum=-4.340e-01;QD=30.46;ReadPosRankSum=1.05;SOR=0.475;VQSLOD=-4.149e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,70:91:99:0|1:248247586_T_G:3002,0,729:248247586
chr1	248247638	rs137986441	T	C	426.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.75;DB;DP=101;ExcessHet=3.9794;FS=13.140;MQ=48.45;MQRankSum=-2.440e+00;QD=2.17;ReadPosRankSum=0.537;SOR=1.765;VQSLOD=-4.833e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,14:101:99:142,0,2326
chr1	248262644	rs78385124	A	G	374.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=24;ExcessHet=3.0103;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-1.160e-01;SOR=0.077;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:383,0,400
chr1	248308783	rs140701631	T	A	3812.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=390;ExcessHet=3.0103;FS=1.692;MQ=59.74;MQRankSum=0.830;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-5.290e-01;SOR=0.803;VQSLOD=0.497;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:232,158:390:99:3821,0,5961
chr1	248343543	rs9435919	C	T	9542.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050e-01;DB;DP=174;ExcessHet=6.9897;FS=4.079;MQ=57.51;MQRankSum=-4.880e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.00;SOR=0.990;VQSLOD=-6.272e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,89:174:99:2565,0,2385
chr1	248344442	rs4916105	C	T	1024.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=1.07;SOR=0.223;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:98:269,0,98
chr1	248366702	rs4916112	G	A	23692.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.984e+00;DB;DP=442;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=1.05;SOR=0.690;VQSLOD=6.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:223,219:442:99:5104,0,5600
chr1	248366792	rs12562957	T	C	4251.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=390;ExcessHet=3.0103;FS=3.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-5.560e-01;SOR=0.874;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:220,170:390:99:4260,0,5495
chr1	248367415	rs4916082	C	T	3729.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.739e+00;DB;DP=34;ExcessHet=3.0103;FS=3.526;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=0.483;SOR=0.382;VQSLOD=6.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1132,102,0
chr1	248402758	rs6666148	C	T	8525.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=132;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=0.423;SOR=0.768;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4489,396,0
chr1	248436611	rs10888338	G	A	6908.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.830e+00;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=51.29;MQRankSum=1.41;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=2.35;SOR=0.683;VQSLOD=-1.481e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:4,85:89:81:2775,81,0
chr1	248436615	rs148491976	C	T	593.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e-01;DB;DP=94;ExcessHet=3.0103;FS=1.848;MQ=50.65;MQRankSum=-3.910e-01;NEGATIVE_TRAIN_SITE;QD=6.31;ReadPosRankSum=-8.100e-02;SOR=0.479;VQSLOD=-3.321e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,30:94:99:602,0,1739
chr1	248436616	rs71538179	A	G	11362.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.330e-01;DB;DP=99;ExcessHet=3.0103;FS=11.686;MQ=51.72;MQRankSum=-1.055e+00;NEGATIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=2.18;SOR=1.236;VQSLOD=-2.767e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,98:99:99:4202,256,0
chr1	248436805	rs28399248	T	G	11490.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=110;ExcessHet=3.0103;FS=0.477;MQ=42.17;MQRankSum=-1.532e+00;QD=29.39;ReadPosRankSum=1.59;SOR=0.654;VQSLOD=-4.442e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,109:110:99:4100,290,0
chr1	248436809	rs61832700	G	A	4678.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226e+00;DB;DP=102;ExcessHet=6.9897;FS=8.078;MQ=41.33;MQRankSum=-3.285e+00;QD=12.51;ReadPosRankSum=-1.100e-02;SOR=1.067;VQSLOD=-4.688e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,48:102:99:0|1:248436809_G_A:1791,0,2153:248436809
chr1	248436811	rs61832701	G	C	4687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.670e-01;DB;DP=98;ExcessHet=6.9897;FS=9.183;MQ=41.15;MQRankSum=-3.478e+00;QD=12.84;ReadPosRankSum=0.073;SOR=1.097;VQSLOD=-5.092e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,44:98:99:0|1:248436809_G_A:1794,0,2116:248436809
chr1	248436857	rs137984104	C	T	241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=84;ExcessHet=3.0103;FS=4.004;MQ=40.48;MQRankSum=-2.847e+00;QD=2.87;ReadPosRankSum=0.384;SOR=0.830;VQSLOD=-4.542e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,14:84:99:250,0,1945
chr1	248436972	rs112084843	A	G	897.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=89;ExcessHet=3.0103;FS=0.832;MQ=47.39;MQRankSum=-1.868e+00;QD=10.08;ReadPosRankSum=-1.297e+00;SOR=0.836;VQSLOD=-3.836e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,34:89:99:906,0,1561
chr1	248437210	rs28407436	T	C	692.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.971;SOR=0.861;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,23:37:99:701,0,348
chr1	248437247	rs144591821	GCCCTAA	G	2526.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.051e+00;DB;DP=20;ExcessHet=3.0103;FS=12.359;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=0.529;SOR=0.043;VQSLOD=1.80;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:889,60,0
chr1	248457979	rs6667171	C	A	21313.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.07;DB;DP=239;ExcessHet=3.0103;FS=1.375;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=-2.010e-01;SOR=0.854;VQSLOD=6.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,239:239:99:8667,716,0
chr1	248457993	rs11204625	C	G	2604.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.135e+00;DB;DP=228;ExcessHet=3.0103;FS=2.267;MQ=59.99;MQRankSum=-1.009e+00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-4.800e-01;SOR=0.541;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:116,112:228:99:2613,0,2941
chr1	248458676	rs6678138	T	C	5536.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.358e+00;DB;DP=47;ExcessHet=3.0103;FS=18.889;MQ=52.11;MQRankSum=1.37;NEGATIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=0.806;SOR=1.710;VQSLOD=-4.133e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:3,44:47:12:1|1:248458676_T_C:1908,12,0:248458676
chr1	248458689	rs6674940	A	G	6626.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.41;DB;DP=57;ExcessHet=3.0103;FS=13.735;MQ=53.62;MQRankSum=1.75;NEGATIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=1.82;SOR=1.467;VQSLOD=-2.730e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:3,54:57:37:1|1:248458676_T_C:2172,37,0:248458676
chr1	248458717	rs12745228	C	G	5759.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.484e+00;DB;DP=78;ExcessHet=3.9794;FS=3.684;MQ=56.34;MQRankSum=-4.610e-01;NEGATIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=4.000e-03;SOR=0.903;VQSLOD=-1.972e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3004,241,0
chr1	248458736	rs28409263	A	G	1307.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092e+00;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=55.50;MQRankSum=-1.870e-01;NEGATIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-2.427e+00;SOR=0.719;VQSLOD=-3.331e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,37:99:99:0|1:248458736_A_G:1316,0,2469:248458736
chr1	248458760	rs12135684	C	A	1494.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352e+00;DB;DP=112;ExcessHet=3.0103;FS=0.730;MQ=56.75;MQRankSum=-4.660e-01;NEGATIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-3.710e-01;SOR=0.816;VQSLOD=-2.278e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:69,43:112:99:0|1:248458736_A_G:1503,0,2620:248458736
chr1	248458875	rs11339452	CT	C	1272.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.681e+00;DB;DP=90;ExcessHet=3.0103;FS=4.222;MQ=57.69;MQRankSum=0.789;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-1.026e+00;SOR=0.376;VQSLOD=0.190;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,39:90:99:1281,0,1773
chr1	248458974	rs11204626	T	A	3486.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.95;DB;DP=30;ExcessHet=3.0103;FS=2.111;MQ=59.82;MQRankSum=-1.780e+00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=0.357;SOR=1.115;VQSLOD=0.524;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,30:30:89:1016,89,0
chr1	248486895	rs4244184	G	T	10560.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.60;DB;DP=114;ExcessHet=3.0103;FS=0.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=-9.780e-01;SOR=0.622;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3794,342,0
chr1	248486913	rs4244185	A	G	11517.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.327e+00;DB;DP=141;ExcessHet=3.0103;FS=0.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=-2.440e-01;SOR=0.550;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4191,421,0
chr1	248487016	rs4451579	C	T	2690.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.902e+00;DB;DP=240;ExcessHet=3.0103;FS=0.476;MQ=59.97;MQRankSum=0.936;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-1.130e-01;SOR=0.634;VQSLOD=2.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:129,111:240:99:2699,0,3530
chr1	248487300	rs4916129	C	T	11204.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.344e+00;DB;DP=287;ExcessHet=6.9897;FS=0.000;MQ=59.23;MQRankSum=0.350;QD=12.30;ReadPosRankSum=-1.500e-01;SOR=0.667;VQSLOD=-4.858e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:161,126:287:99:3231,0,4521
chr1	248487338	rs4916130	C	A	24541.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.773e+00;DB;DP=293;ExcessHet=3.0103;FS=0.000;MQ=59.35;MQRankSum=-2.691e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=0.180;SOR=0.658;VQSLOD=0.785;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,293:293:99:9518,878,0
chr1	248487638	rs7555310	A	G	16972.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=6.42;DB;DP=178;ExcessHet=3.0103;FS=5.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=0.457;SOR=0.946;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,177:178:99:6387,496,0
chr1	248487768	rs7555424	A	G	20874.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.460e-01;DB;DP=299;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.867;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-6.650e-01;SOR=0.701;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,299:299:99:9517,895,0
chr1	248511928	rs28419186	G	T	320.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-1.085e+00;SOR=0.387;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:138,0,141
chr1	248512064	rs28372410	T	G	3382.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.52;DB;DP=76;ExcessHet=6.9897;FS=8.722;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.573e+00;SOR=1.195;VQSLOD=4.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,28:76:99:844,0,1279
chr1	248512094	rs28728105	C	T	4139.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DB;DP=99;ExcessHet=6.9897;FS=3.110;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-4.200e-02;SOR=0.885;VQSLOD=6.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,40:99:99:1012,0,1619
chr1	248512498	rs28448343	A	G	2024.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.470e-01;DB;DP=145;ExcessHet=3.0103;FS=4.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.621;SOR=1.097;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,74:145:99:2033,0,1932
chr1	248512637	rs2039824	C	T	5572.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219e+00;DB;DP=114;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.279;SOR=0.723;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,60:114:99:1716,0,1412
chr1	248512749	rs28377739	G	A	4174.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DB;DP=86;ExcessHet=6.9897;FS=3.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-8.690e-01;SOR=0.678;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,42:86:99:1099,0,1102
chr1	248512767	rs28545014	G	T	3607.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224e+00;DB;DP=83;ExcessHet=6.9897;FS=0.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-1.509e+00;SOR=0.737;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,41:83:99:990,0,1091
chr1	248513023	rs28607995	G	A	1172.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=19;ExcessHet=6.9897;FS=4.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=1.25;SOR=1.522;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:235,0,303
chr1	248524799	rs377543062	AAC	A	553.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DB;DP=30;ExcessHet=3.0103;FS=2.614;MQ=60.00;MQRankSum=0.00;QD=18.44;ReadPosRankSum=0.647;SOR=1.949;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,18:30:99:562,0,329
chr1	248525053	rs28415565	A	T	1637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.77;DB;DP=194;ExcessHet=3.0103;FS=7.695;MQ=57.49;MQRankSum=-9.988e+00;QD=8.44;ReadPosRankSum=-2.625e+00;SOR=0.319;VQSLOD=-5.154e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:148,46:194:99:0|1:248524937_ATGGGACTCTTCAGACAATCCAAACATCCAATGGCCAATATCACCTGGATGGCCAACCACACTGGATGGTCGGATTTCATCCTGT_A:1646,0,7557:248524937
chr1	248525135	rs76721536	G	A	169.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694e+00;DB;DP=301;ExcessHet=3.0103;FS=1.721;MQ=54.66;MQRankSum=-2.849e+00;NEGATIVE_TRAIN_SITE;QD=0.56;ReadPosRankSum=-6.400e-02;SOR=0.916;VQSLOD=-3.970e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:277,24:301:99:0|1:248525135_G_A:178,0,13663:248525135
chr1	248525138	rs75096121	C	T	169.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.468e+00;DB;DP=306;ExcessHet=3.0103;FS=0.000;MQ=54.67;MQRankSum=-3.166e+00;NEGATIVE_TRAIN_SITE;QD=0.55;ReadPosRankSum=-6.620e-01;SOR=0.670;VQSLOD=-4.216e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:279,27:306:99:0|1:248525135_G_A:178,0,13680:248525135
chr1	248525638	rs34079073	CA	C	18263.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DB;DP=211;ExcessHet=3.9794;FS=0.565;MQ=59.78;MQRankSum=3.34;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=0.061;SOR=0.641;VQSLOD=1.52;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:102,109:211:99:0|1:248525638_CA_C:3760,0,4004:248525638
chr1	248525647	rs28405645	C	A	3738.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.705e+00;DB;DP=204;ExcessHet=3.0103;FS=1.117;MQ=58.97;MQRankSum=-3.861e+00;NEGATIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=1.20;SOR=0.819;VQSLOD=-1.502e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:106,98:204:99:1|0:248525638_CA_C:3747,0,4315:248525638
chr1	248525650	rs28602650	C	T	3756.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.452e+00;DB;DP=202;ExcessHet=3.0103;FS=2.492;MQ=58.96;MQRankSum=-3.902e+00;NEGATIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=1.18;SOR=0.883;VQSLOD=-1.802e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:106,96:202:99:1|0:248525638_CA_C:3765,0,4198:248525638
chr1	248525657	rs28718027	G	A	3594.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=196;ExcessHet=3.0103;FS=4.214;MQ=58.71;MQRankSum=-3.928e+00;NEGATIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.917;SOR=1.001;VQSLOD=-2.443e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:104,92:196:99:1|0:248525638_CA_C:3603,0,4108:248525638
chr1	248525780	rs28698997	C	T	1624.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457e+00;DB;DP=125;ExcessHet=3.0103;FS=11.302;MQ=55.99;MQRankSum=-1.678e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.593;SOR=0.500;VQSLOD=-6.416e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,60:125:99:1633,0,1889
chr1	248526181	rs2226009	T	G	70.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:77,0,31
chr1	248550894	rs7418152	T	G	1607.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=55;ExcessHet=3.9794;FS=0.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.064;SOR=0.554;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:764,0,758
chr1	248550970	rs7417616	A	G	2681.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DB;DP=95;ExcessHet=3.9794;FS=1.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.020;SOR=0.615;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,53:95:99:1391,0,1043
chr1	248550976	rs6587467	T	G	10614.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=99;ExcessHet=3.0103;FS=3.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=0.642;SOR=0.520;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3876,300,0
chr1	248551203	rs6700947	T	C	1071.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800e-02;DB;DP=84;ExcessHet=3.0103;FS=0.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.599;SOR=0.529;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,37:84:99:1080,0,1347
chr1	248551560	rs954474	C	T	2311.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.078e+00;DB;DP=229;ExcessHet=3.0103;FS=1.014;MQ=59.98;MQRankSum=-1.097e+00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=1.46;SOR=0.621;VQSLOD=1.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:126,100:229:99:2320,0,3063
chr1	248551636	rs954475	T	G	2045.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=197;ExcessHet=3.0103;FS=1.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-2.000e-02;SOR=0.801;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,78:197:99:2054,0,3247
chr1	248551955	rs28437787	C	A	331.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-1.262e+00;SOR=0.368;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:340,0,376
chr1	248569282	rs28667896	A	G	2222.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=52;ExcessHet=6.9897;FS=1.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-1.265e+00;SOR=0.844;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,19:52:99:527,0,967
chr1	248569369	rs28599722	A	G	5099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-02;DB;DP=134;ExcessHet=6.9897;FS=3.258;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.821;SOR=0.905;VQSLOD=6.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,61:134:99:1463,0,1791
chr1	248570440	rs6695780	G	A	4960.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-1.800e-01;SOR=0.663;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1622,147,0
chr1	248570551	rs77025916	A	AGAGT	1881.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.09;ReadPosRankSum=-1.020e-01;SOR=0.709;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:248570551_A_AGAGT:305,0,753:248570551
chr1	248570553	rs146850247	A	AT	1882.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.278e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.42;ReadPosRankSum=-1.020e-01;SOR=0.901;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:248570551_A_AGAGT:305,0,753:248570551
chr1	248604452	rs78822516	A	G	1416.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=25;ExcessHet=6.9897;FS=1.043;MQ=50.85;MQRankSum=-1.255e+00;NEGATIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=1.17;SOR=0.879;VQSLOD=-3.096e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,5:25:99:0|1:248604452_A_G:147,0,849:248604452
chr1	248604465	rs76925977	C	T	1674.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DB;DP=27;ExcessHet=3.9794;FS=0.870;MQ=48.51;MQRankSum=-5.230e-01;QD=16.42;ReadPosRankSum=0.00;SOR=0.809;VQSLOD=-3.325e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,4:27:99:0|1:248604452_A_G:120,0,892:248604452
chr1	248604559	rs150497047	T	TTC	3633.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=23;ExcessHet=3.0103;FS=2.792;MQ=36.61;MQRankSum=1.84;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.72;ReadPosRankSum=1.21;SOR=1.788;VQSLOD=0.368;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:81:1|1:248604542_C_T:1117,81,0:248604542
chr1	248605395	rs28631666	T	G	2933.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=0.4576;FS=0.000;MQ=52.35;NEGATIVE_TRAIN_SITE;QD=33.71;SOR=1.749;VQSLOD=0.031;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2950,261,0
chr1	248605436	rs71642447	C	G	5870.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395e+00;DB;DP=48;ExcessHet=3.9794;FS=3.073;MQ=49.25;MQRankSum=-6.810e+00;QD=26.45;ReadPosRankSum=0.313;SOR=0.993;VQSLOD=-3.664e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,7:48:99:0|1:248605436_C_G:130,0,1696:248605436
chr1	248605442	rs71642448	G	T	5785.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.340e-01;DB;DP=46;ExcessHet=3.9794;FS=1.428;MQ=49.10;MQRankSum=-6.012e+00;QD=26.91;ReadPosRankSum=-6.980e-01;SOR=0.865;VQSLOD=-3.723e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,6:46:94:0|1:248605436_C_G:94,0,1699:248605436
chr1	248605527	rs116770443	G	C	92.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DB;DP=19;ExcessHet=3.0103;FS=3.299;MQ=54.85;MQRankSum=-2.213e+00;NEGATIVE_TRAIN_SITE;QD=4.86;ReadPosRankSum=1.39;SOR=0.120;VQSLOD=-2.812e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:101,0,484
chr1	248617119	.	T	C	613.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DP=98;ExcessHet=6.9897;FS=14.159;MQ=56.85;MQRankSum=-2.951e+00;NEGATIVE_TRAIN_SITE;QD=1.57;ReadPosRankSum=-9.460e-01;SOR=0.181;VQSLOD=-3.018e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:92,6:98:53:0|1:248617119_T_C:53,0,3923:248617119
chr1	248617123	rs199745092	C	T	808.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=91;ExcessHet=6.9897;FS=13.086;MQ=56.62;MQRankSum=-2.918e+00;NEGATIVE_TRAIN_SITE;QD=2.20;ReadPosRankSum=-1.036e+00;SOR=0.205;VQSLOD=-2.850e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:83,8:91:83:0|1:248617119_T_C:83,0,3503:248617119
chr1	248617133	rs78191942	C	T	1064.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.377e+00;DB;DP=80;ExcessHet=6.9897;FS=20.180;MQ=56.38;MQRankSum=-3.014e+00;NEGATIVE_TRAIN_SITE;QD=3.34;ReadPosRankSum=-2.910e-01;SOR=0.143;VQSLOD=-3.852e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:71,9:80:99:0|1:248617119_T_C:149,0,3164:248617119
chr1	248617150	.	T	C	1448.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.402e+00;DP=55;ExcessHet=6.9897;FS=16.670;MQ=55.87;MQRankSum=-3.858e+00;NEGATIVE_TRAIN_SITE;QD=5.70;ReadPosRankSum=2.07;SOR=0.150;VQSLOD=-3.642e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,10:55:99:0|1:248617119_T_C:278,0,1943:248617119
chr1	248617173	rs78428672	A	G	725.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.690e-01;DB;DP=29;ExcessHet=3.0103;FS=9.856;MQ=52.96;MQRankSum=-3.211e+00;NEGATIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=-1.233e+00;SOR=2.383;VQSLOD=-2.514e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,19:29:99:0|1:248617173_A_G:734,0,363:248617173
chr1	248617181	.	C	T	668.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.96;DP=24;ExcessHet=3.0103;FS=12.218;MQ=52.78;MQRankSum=-2.941e+00;NEGATIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=-1.881e+00;SOR=3.373;VQSLOD=-3.610e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,15:24:99:0|1:248617173_A_G:677,0,369:248617173
chr1	248617266	rs369960197	C	T	808.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.007e+00;DB;DP=6;ExcessHet=6.9897;FS=7.412;MQ=51.43;MQRankSum=0.795;NEGATIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-2.100e-01;SOR=0.054;VQSLOD=-1.570e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,5:6:27:0|1:248617266_C_T:176,0,27:248617266
chr1	248617276	rs192833957	A	G	569.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=49.92;MQRankSum=0.431;NEGATIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-3.570e-01;SOR=0.269;VQSLOD=-3.026e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:33:0|1:248617266_C_T:103,0,33:248617266
chr1	248637416	rs75924848	G	C	10736.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.644e+00;DB;DP=330;ExcessHet=3.0103;FS=5.837;MQ=46.60;MQRankSum=4.58;QD=32.53;ReadPosRankSum=0.693;SOR=0.414;VQSLOD=-4.310e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:68,262:330:99:0|1:248637416_G_C:10745,0,2128:248637416
chr1	248637543	rs139993642	C	T	6804.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=368;ExcessHet=3.9794;FS=0.544;MQ=43.25;MQRankSum=-2.109e+00;QD=10.96;ReadPosRankSum=1.15;SOR=0.789;VQSLOD=-4.310e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:190,178:368:99:4230,0,4186
chr1	248637624	rs202063444	G	T	933.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=176;ExcessHet=3.0103;FS=1.730;MQ=44.35;MQRankSum=-1.970e+00;QD=5.30;ReadPosRankSum=1.40;SOR=0.503;VQSLOD=-4.239e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,43:176:99:942,0,3894
chr1	248637734	rs199543307	G	A	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=39.65;MQRankSum=-9.760e-01;QD=11.51;ReadPosRankSum=0.515;SOR=0.255;VQSLOD=-4.815e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,6:18:99:0|1:248637734_G_A:216,0,460:248637734
chr1	248685253	rs9727474	T	C	14205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=0.719;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:4670,486,0
chr1	248722428	.	A	ACG	239.72	PASS	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=0.4576;FS=0.000;MQ=28.64;QD=27.63;SOR=3.611;VQSLOD=4.96;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:18:1|1:248722428_A_ACG:255,18,0:248722428
chr1	248722777	rs77589892	T	A	2751.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DB;DP=63;ExcessHet=3.9794;FS=5.048;MQ=43.49;MQRankSum=2.76;QD=17.86;ReadPosRankSum=0.852;SOR=0.795;VQSLOD=-4.024e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,45:63:99:1352,0,343
chr1	248722883	rs78125102	A	G	549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DB;DP=30;ExcessHet=3.0103;FS=4.821;MQ=41.98;MQRankSum=-1.340e-01;QD=18.31;ReadPosRankSum=-1.038e+00;SOR=2.376;VQSLOD=-5.051e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,15:30:99:0|1:248722883_A_G:558,0,574:248722883
chr1	248722888	rs78981094	C	G	495.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119e+00;DB;DP=27;ExcessHet=3.0103;FS=4.869;MQ=41.11;MQRankSum=-2.600e-02;QD=18.34;ReadPosRankSum=-7.040e-01;SOR=2.275;VQSLOD=-5.235e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,13:27:99:0|1:248722883_A_G:504,0,545:248722883
chr1	248737329	rs75095367	C	T	1764.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.873e+00;DB;DP=341;ExcessHet=3.0103;FS=2.906;MQ=50.38;MQRankSum=3.53;NEGATIVE_TRAIN_SITE;QD=5.17;ReadPosRankSum=1.37;SOR=0.512;VQSLOD=-3.829e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:249,92:341:99:1773,0,7028
chr1	248737343	rs61833441	C	T	4719.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=394;ExcessHet=3.0103;FS=11.324;MQ=51.55;MQRankSum=-5.275e+00;QD=11.98;ReadPosRankSum=-1.734e+00;SOR=1.183;VQSLOD=-3.500e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:265,129:394:99:0|1:248737343_C_T:4728,0,10773:248737343
chr1	248737348	rs61833442	G	A	4913.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.77;DB;DP=420;ExcessHet=3.0103;FS=2.737;MQ=51.73;MQRankSum=-4.648e+00;NEGATIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-1.997e+00;SOR=0.930;VQSLOD=-3.578e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:276,144:420:99:0|1:248737343_C_T:4922,0,10943:248737343
chr1	248738183	rs1782199	G	T	253.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=56.07;MQRankSum=-3.126e+00;NEGATIVE_TRAIN_SITE;QD=4.52;ReadPosRankSum=1.95;SOR=0.066;VQSLOD=-3.915e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:65:65,0,387
chr1	248738284	rs202001442	C	A	78.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=51.63;MQRankSum=-1.150e+00;NEGATIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=-3.065e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:87:87,0,115
chr1	248756167	rs61732484	C	G	968.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357e+00;DB;DP=72;ExcessHet=3.0103;FS=1.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-6.420e-01;SOR=0.945;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:977,0,1041
chr1	248756411	rs28733753	T	A	859.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=94;ExcessHet=3.0103;FS=1.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=1.44;SOR=0.981;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,33:94:99:868,0,1511
chr1	248756434	rs61997185	C	A	841.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=0.586;SOR=0.743;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,32:88:99:850,0,1492
chr1	248756474	rs28664620	A	G	866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662e+00;DB;DP=96;ExcessHet=3.0103;FS=1.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=-7.610e-01;SOR=0.469;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,35:96:99:875,0,1764
chr1	248756994	rs28405936	G	A	1085.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=74;ExcessHet=3.0103;FS=0.890;MQ=59.80;MQRankSum=1.03;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=1.90;SOR=0.924;VQSLOD=1.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,37:74:99:1094,0,847
chr1	248789454	rs1892441	G	C	7373.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372e+00;DB;DP=82;ExcessHet=3.0103;FS=1.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.47;ReadPosRankSum=-9.000e-03;SOR=0.567;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1262,0,965
chr1	248789504	rs1892442	T	C	11743.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696e+00;DB;DP=140;ExcessHet=3.0103;FS=0.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=-9.550e-01;SOR=0.737;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,75:140:99:1956,0,1695
chr1	248790075	rs1892443	A	G	18602.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457e+00;DB;DP=258;ExcessHet=3.0103;FS=0.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=-2.200e-02;SOR=0.744;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,130:258:99:3217,0,3422
chr1	248801566	rs74154510	T	G	9902.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DB;DP=142;ExcessHet=3.9794;FS=23.632;MQ=55.30;MQRankSum=2.37;NEGATIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=0.994;SOR=1.731;VQSLOD=-4.510e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:103,39:142:99:0|1:248801480_A_G:1361,0,35258:248801480
chr1	248801592	rs78622116	C	T	12379.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.537e+00;DB;DP=157;ExcessHet=3.0103;FS=8.935;MQ=52.52;MQRankSum=3.24;NEGATIVE_TRAIN_SITE;QD=30.87;ReadPosRankSum=2.72;SOR=1.363;VQSLOD=-3.030e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:105,52:157:99:0|1:248801480_A_G:1864,0,32784:248801480
chr1	248801610	rs150878651	G	A	13450.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.285e+00;DB;DP=159;ExcessHet=3.0103;FS=8.953;MQ=51.32;MQRankSum=2.60;NEGATIVE_TRAIN_SITE;QD=31.95;ReadPosRankSum=2.37;SOR=1.308;VQSLOD=-3.105e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:104,55:159:99:0|1:248801480_A_G:2035,0,30213:248801480
chr1	248801611	rs143981271	C	T	13450.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.781e+00;DB;DP=159;ExcessHet=3.0103;FS=7.666;MQ=51.29;MQRankSum=2.48;NEGATIVE_TRAIN_SITE;QD=31.87;ReadPosRankSum=1.83;SOR=1.250;VQSLOD=-2.797e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:104,55:159:99:0|1:248801480_A_G:2035,0,30213:248801480
chr1	248801633	rs74901534	A	G	13710.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=170;ExcessHet=3.0103;FS=6.071;MQ=50.56;MQRankSum=1.82;NEGATIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=-2.690e-01;SOR=1.151;VQSLOD=-2.484e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:111,59:170:99:0|1:248801480_A_G:2090,0,28666:248801480
chr1	248802763	rs77518069	C	T	1140.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.540e-01;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=48.96;MQRankSum=0.178;QD=21.13;ReadPosRankSum=0.526;SOR=1.329;VQSLOD=-2.659e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:162,0,483
chr1	248813009	rs28711378	A	G	335.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=47.90;QD=28.18;SOR=4.407;VQSLOD=-2.031e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr1	248813135	rs4916153	G	A	2525.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e+00;DB;DP=26;ExcessHet=3.0103;FS=2.342;MQ=58.87;MQRankSum=1.14;NEGATIVE_TRAIN_SITE;QD=30.43;ReadPosRankSum=0.231;SOR=0.365;VQSLOD=-1.310e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,13:26:99:398,0,504
chr1	248813510	rs140542533	A	G	2274.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.24;DB;DP=172;ExcessHet=3.0103;FS=5.409;MQ=49.27;MQRankSum=1.48;QD=13.22;ReadPosRankSum=-1.121e+00;SOR=0.907;VQSLOD=-2.368e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,80:172:99:2283,0,2375
chr1	248813601	rs144939744	G	A	2097.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DB;DP=173;ExcessHet=3.0103;FS=0.000;MQ=43.54;MQRankSum=-8.100e-02;QD=12.12;ReadPosRankSum=0.825;SOR=0.675;VQSLOD=-4.344e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,85:173:99:2106,0,2187
chr1	248813749	rs151135924	G	A	2499.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=269;ExcessHet=3.0103;FS=0.962;MQ=49.28;MQRankSum=2.58;QD=9.29;ReadPosRankSum=-4.130e-01;SOR=0.780;VQSLOD=-4.191e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:161,108:269:99:2508,0,3922
chr1	248814052	rs28533004	T	A	9820.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.631;DB;DP=179;ExcessHet=3.9794;FS=4.250;MQ=39.54;MQRankSum=1.97;QD=16.70;ReadPosRankSum=0.603;SOR=0.451;VQSLOD=-5.189e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,179:179:99:5255,535,0
chr1	248814080	rs1782242	A	C	18148.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MQ=42.93;POSITIVE_TRAIN_SITE;QD=28.95;SOR=1.166;VQSLOD=-2.431e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,198:198:99:5712,594,0
chr1	248814126	rs28418327	G	A	7651.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=203;ExcessHet=6.9897;FS=1.887;MQ=46.12;MQRankSum=-2.174e+00;QD=12.50;ReadPosRankSum=0.093;SOR=0.874;VQSLOD=-3.636e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,132:203:99:3132,0,1389
chr1	248844491	.	C	G	119.54	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.89;SOR=1.609;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:136,12,0
chr1	248844959	rs55871516	T	C	1698.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940e-01;DB;DP=130;ExcessHet=3.0103;FS=1.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-1.241e+00;SOR=0.534;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,64:130:99:1707,0,1792
chr1	248845097	rs2000390	C	T	13456.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-1.700e-02;SOR=0.740;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,79:159:99:2070,0,2165
chr1	248845411	rs11485825	G	A	10195.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=99;ExcessHet=3.0103;FS=0.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=0.254;SOR=0.776;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,55:99:99:1492,0,1033
chr1	248845458	rs4509608	C	T	9842.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.225;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2464,228,0
chr1	248845471	rs4575113	T	C	9120.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=1.175;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2313,219,0
chr1	248845499	rs4462184	A	G	8654.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=1.183;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2183,198,0
chr1	248845625	rs114358287	T	A	490.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622e+00;DB;DP=32;ExcessHet=3.0103;FS=9.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=3.43;SOR=0.056;VQSLOD=18.00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,20:32:99:499,0,366
chr1	248902750	rs113917587	A	G	111.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=0.623;SOR=0.368;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:120,0,66
chr1	248903180	rs73148524	C	T	2161.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=171;ExcessHet=3.0103;FS=2.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-3.570e-01;SOR=0.923;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,86:171:99:2170,0,2020
chr1	248903311	rs34754014	T	G	617.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=-9.300e-01;SOR=1.071;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:626,0,372
chr1	249107065	rs75254356	C	T	197.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=1.24;SOR=0.307;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:206,0,136
chr1	249109034	rs10888590	A	G	405.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DB;DP=21;ExcessHet=3.0103;FS=2.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=-2.176e+00;SOR=2.170;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:414,0,200
chr1	249110906	rs4926508	G	C	5339.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.940e-01;DB;DP=70;ExcessHet=3.9794;FS=0.474;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=0.420;SOR=0.630;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,39:70:99:1115,0,935
chr1	249120684	rs11205415	T	G	899.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=64;ExcessHet=3.0103;FS=0.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=2.34;SOR=0.486;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,37:64:99:908,0,633
chr1	249120794	rs11205416	G	A	201.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=-1.944e+00;SOR=0.859;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:210,0,166
chr1	249145072	rs11434456	C	CA	1644.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.58;DB;DP=52;ExcessHet=3.9794;FS=5.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.657;SOR=0.287;VQSLOD=6.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,29:52:99:1013,0,774
chr1	249149486	rs12135449	T	C	1055.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=39;ExcessHet=3.9794;FS=9.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-1.130e-01;SOR=0.191;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:577,0,480
chr1	249149747	rs73152349	T	C	3114.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=143;ExcessHet=3.9794;FS=0.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=1.27;SOR=0.628;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,48:143:99:1152,0,2303
chr1	249150022	rs140745254	G	A	1134.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=116;ExcessHet=3.0103;FS=4.593;MQ=60.00;MQRankSum=0.00;QD=9.78;ReadPosRankSum=0.979;SOR=0.561;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,46:116:99:1143,0,1935
chr1	249150116	rs13313088	G	C	1427.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DB;DP=116;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.00;ReadPosRankSum=1.73;SOR=0.725;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,32:116:99:657,0,2176
chr1	249150205	rs13313009	C	T	791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-02;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.76;ReadPosRankSum=0.347;SOR=0.746;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,11:58:99:213,0,1383
chr1	249150330	rs13313010	C	T	602.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=1.50;SOR=0.527;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:138,0,258
chr1	249151879	rs369827844	G	A	1350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DB;DP=90;ExcessHet=3.0103;FS=0.820;MQ=60.00;MQRankSum=0.00;QD=15.00;ReadPosRankSum=-2.870e-01;SOR=0.818;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1359,0,1372
chr1	249152996	.	C	T	95.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.83;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:102,0,33
chr2	41404	rs10173732	G	A	131.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=0.454;SOR=0.368;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,7:25:99:140,0,556
chr2	41720	rs138120439	A	T	84.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=-1.480e-01;SOR=0.446;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:93:93,0,310
chr2	45895	rs4241318	A	G	13374.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.68;SOR=0.699;VQSLOD=17.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:5254,438,0
chr2	224919	rs2290911	A	G	2632.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=2.09;SOR=0.689;VQSLOD=6.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1791,185,0
chr2	224970	rs2290912	C	T	5051.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=1.278;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1509,156,0
chr2	230912	rs2306060	A	C	2115.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=27;ExcessHet=3.9794;FS=2.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=0.276;SOR=0.450;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:955,81,0
chr2	242732	rs113405432	T	TAAC	2140.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.227e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.68;ReadPosRankSum=-2.386e+00;SOR=0.642;VQSLOD=4.62;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,21:21:66:936,66,0
chr2	242793	rs62114506	G	C	1687.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=40;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.84;ReadPosRankSum=-2.023e+00;SOR=0.831;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1204,120,0
chr2	243567	rs11383620	T	TA	4252.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.071;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=0.287;SOR=0.736;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,51:56:99:1417,125,0
chr2	262553	rs7596678	T	C	3167.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=2.732;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:842,72,0
chr2	264019	rs7595075	C	A	1842.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.780e-01;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=0.339;SOR=0.722;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1157,116,0
chr2	264227	rs7584915	G	A	117.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.40;SOR=1.609;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	264895	rs4854300	G	C	7074.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.55;SOR=2.514;VQSLOD=18.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2535,216,0
chr2	271797	rs59937473	G	A	1536.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=21;ExcessHet=3.9794;FS=3.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=0.507;SOR=1.302;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:697,63,0
chr2	271998	rs112400131	CA	C	2776.21	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.170e-01;DB;DP=59;ExcessHet=3.0103;FS=0.768;MQ=59.99;MQRankSum=0.00;QD=15.17;ReadPosRankSum=0.00;SOR=0.865;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,50:59:77:1176,77,0
chr2	272203	rs11553746	C	T	8100.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.438e+00;DB;DP=124;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=1.90;SOR=0.695;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3919,370,0
chr2	272840	rs12714401	G	A	3971.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=3.422;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:997,87,0
chr2	272926	rs12714402	A	G	8680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=0.977;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2440,256,0
chr2	273070	rs12714403	A	G	6859.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.46;SOR=1.379;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2108,195,0
chr2	276908	rs7568288	C	G	683.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=5.784;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr2	277003	rs79716074	A	G	2442.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.500e+00;DB;DP=33;ExcessHet=3.9794;FS=3.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.837;SOR=1.349;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1139,99,0
chr2	283231	rs368562757	A	AT	2052.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=2.372;VQSLOD=6.51;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:517,51,0
chr2	287448	.	TAAAA	T,TA	8535.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.135;DP=75;ExcessHet=3.0103;FS=6.220;MQ=59.56;MQRankSum=-2.130e-01;POSITIVE_TRAIN_SITE;QD=32.73;ReadPosRankSum=-2.340e-01;SOR=2.452;VQSLOD=0.454;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,28,35:75:99:2498,689,629,593,0,434
chr2	672745	rs34848618	T	C	193.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880e-01;DB;DP=21;ExcessHet=3.0103;FS=2.092;MQ=60.00;MQRankSum=0.00;QD=9.20;ReadPosRankSum=-7.200e-02;SOR=0.293;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:202,0,388
chr2	675831	rs2293084	G	T	3931.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e+00;DB;DP=75;ExcessHet=1.5490;FS=7.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=-1.790e-01;SOR=1.490;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,30:75:99:803,0,1363
chr2	676177	rs2293083	C	G	10865.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=156;ExcessHet=3.0103;FS=0.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-2.670e-01;SOR=0.795;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,66:156:99:1655,0,2174
chr2	676457	rs2293082	G	C	8554.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=79;ExcessHet=3.0103;FS=5.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=-2.330e-01;SOR=0.345;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,34:79:99:0|1:676457_G_C:1392,0,4166:676457
chr2	676478	rs3215297	T	TGTAA	11945.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DB;DP=105;ExcessHet=3.0103;FS=2.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.54;ReadPosRankSum=-5.720e-01;SOR=0.493;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:56,49:105:99:0|1:676457_G_C:1973,0,4807:676457
chr2	677213	rs3749138	G	A	2092.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=25;ExcessHet=3.0103;FS=3.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=-4.250e-01;SOR=1.700;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:187,0,428
chr2	905956	rs10177046	C	G	437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=49;ExcessHet=3.0103;FS=6.955;MQ=59.25;MQRankSum=0.981;NEGATIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=0.412;SOR=1.855;VQSLOD=-1.516e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,15:49:99:446,0,1375
chr2	905967	rs6711173	A	G	3087.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-01;DB;DP=47;ExcessHet=3.0103;FS=5.948;MQ=59.35;MQRankSum=-6.390e-01;NEGATIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-2.970e-01;SOR=0.243;VQSLOD=-1.521e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,32:47:99:867,0,514
chr2	906044	rs6708283	C	T	1318.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520e-01;DB;DP=17;ExcessHet=3.0103;FS=1.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=-9.400e-02;SOR=0.430;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:212,0,337
chr2	906063	rs12998283	G	C	271.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=13;ExcessHet=3.0103;FS=2.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=-5.640e-01;SOR=2.303;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:280,0,186
chr2	947006	rs6720676	T	C	166.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=1.981;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	1078947	rs113462029	C	A	69.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=6.94;SOR=4.804;VQSLOD=7.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr2	1079143	rs4971431	A	G	5690.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=34.91;SOR=1.791;VQSLOD=5.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1449,117,0
chr2	1079320	rs4971432	C	T	4950.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=42;ExcessHet=3.0103;FS=4.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=1.47;SOR=0.270;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,28:42:99:826,0,333
chr2	1093965	rs11127460	G	A	6261.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DB;DP=106;ExcessHet=3.9794;FS=2.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=0.727;SOR=0.673;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,59:106:99:1471,0,1166
chr2	1133188	rs35182823	G	GCACA	2154.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.590e-01;DB;DP=37;ExcessHet=6.9897;FS=10.610;MQ=60.00;MQRankSum=0.00;QD=18.42;ReadPosRankSum=0.217;SOR=0.128;VQSLOD=2.44;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,16:37:99:609,0,1084
chr2	1241592	rs146197111	C	T	3607.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.19;ReadPosRankSum=1.43;SOR=2.833;VQSLOD=-2.034e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:962,80,0
chr2	1250878	rs28622255	T	C	1891.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.080;DB;DP=28;ExcessHet=3.9794;FS=1.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=1.01;SOR=0.551;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:921,84,0
chr2	1320143	rs4927635	C	T	3667.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.350e-01;DB;DP=84;ExcessHet=1.5490;FS=2.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=0.753;SOR=0.522;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2562,251,0
chr2	1320300	rs35466197	A	G	1142.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.690e-01;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.57;ReadPosRankSum=0.636;SOR=0.392;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:1320300_A_G:716,48,0:1320300
chr2	1320304	rs74994128	C	A	1120.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.29;ReadPosRankSum=1.42;SOR=0.655;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:48:1|1:1320300_A_G:716,48,0:1320300
chr2	1320305	rs79534404	G	C	1079.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.85;ReadPosRankSum=0.870;SOR=0.829;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:1320300_A_G:675,45,0:1320300
chr2	1320332	rs143138521	T	TCCCTTATCTGAAATGCTTGAGACCAGAAGTGTTTGGGA	366.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.35;ReadPosRankSum=-1.834e+00;SOR=2.494;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:14:223,14,0
chr2	1426621	rs2276702	A	G	1171.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-01;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=-3.970e-01;SOR=0.941;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:203,0,446
chr2	1442551	rs33990262	ATT	A,AT	2370.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.210;DB;DP=65;ExcessHet=3.9794;FS=8.785;MQ=60.00;MQRankSum=0.00;QD=14.63;ReadPosRankSum=-4.230e-01;SOR=0.270;VQSLOD=3.59;culprit=FS	GT:AD:DP:GQ:PL	1/2:4,13,46:65:99:1307,883,992,242,0,147
chr2	1457364	rs2070881	A	G	11814.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=131;ExcessHet=3.0103;FS=4.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=-1.550e-01;SOR=1.224;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,72:131:99:1980,0,1399
chr2	1459806	rs4927610	A	G	1852.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=2.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=-7.020e-01;SOR=0.252;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:161,0,172
chr2	1480734	rs115298811	A	G	1125.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=96;ExcessHet=3.0103;FS=1.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-7.440e-01;SOR=0.496;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,43:96:99:1134,0,1335
chr2	1481231	rs2175977	G	C	5503.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.820e-01;DB;DP=85;ExcessHet=3.0103;FS=5.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=-1.110e+00;SOR=0.395;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1233,0,1101
chr2	1488668	rs6715129	T	C	1546.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=33;ExcessHet=3.9794;FS=12.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=0.703;SOR=0.061;VQSLOD=17.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:509,0,490
chr2	1488831	rs28911469	A	C	160.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.63;SOR=3.258;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	1491370	rs28911482	A	C	108.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:1491370_A_C:117,0,117:1491370
chr2	1491381	rs6714887	C	A	138.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-1.200e-01;SOR=0.527;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:1491370_A_C:147,0,190:1491370
chr2	1491420	rs28911483	C	A	195.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.02;ReadPosRankSum=1.35;SOR=1.230;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:204,0,302
chr2	1491497	rs6727192	T	C	449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-2.505e+00;SOR=0.569;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:458,0,567
chr2	1497342	rs28991270	C	T	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.53;ReadPosRankSum=-4.390e-01;SOR=1.179;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:141,0,103
chr2	1497442	rs9679267	A	G	1551.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.460e-01;DB;DP=53;ExcessHet=3.9794;FS=0.873;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.123;SOR=0.869;VQSLOD=5.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:592,0,825
chr2	1497831	rs10189329	G	A	627.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=53;ExcessHet=3.0103;FS=3.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-7.640e-01;SOR=1.383;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,21:53:99:636,0,932
chr2	1500665	rs867983	C	T	1028.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710e-01;DB;DP=34;ExcessHet=3.9794;FS=2.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-1.639e+00;SOR=1.179;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,23:34:99:720,0,262
chr2	1520676	rs1126799	T	C	5159.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.29;DB;DP=59;ExcessHet=3.9794;FS=0.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=-7.800e-01;SOR=0.623;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,25:59:99:633,0,965
chr2	1544617	rs12615819	G	A	1959.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=142;ExcessHet=3.0103;FS=2.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.892;SOR=0.536;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,74:142:99:1968,0,1618
chr2	1546073	rs28915684	G	A	93.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:93:102,0,93
chr2	1546327	rs1042589	C	G	4270.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DB;DP=101;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.24;ReadPosRankSum=0.145;SOR=0.694;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,41:101:99:944,0,1435
chr2	1546531	rs2280127	C	T	602.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.50;ReadPosRankSum=1.61;SOR=2.093;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:63:215,0,63
chr2	1639060	rs2241458	A	G	534.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.261e+00;DB;DP=18;ExcessHet=6.9897;FS=5.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-1.031e+00;SOR=1.759;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:144,0,306
chr2	1639122	rs2241457	T	C	1502.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DB;DP=39;ExcessHet=6.9897;FS=6.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-3.520e-01;SOR=1.289;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:452,0,591
chr2	1642453	rs6729173	T	C	1511.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=1.44;SOR=3.767;VQSLOD=16.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:233,0,159
chr2	1642537	rs6729142	T	C	7169.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.814e+00;DB;DP=46;ExcessHet=3.0103;FS=2.711;MQ=60.00;MQRankSum=0.00;QD=34.21;ReadPosRankSum=-2.002e+00;SOR=0.410;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,22:46:99:0|1:1642537_T_C:974,0,1127:1642537
chr2	1642539	rs6742040	C	T	7527.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=50;ExcessHet=3.0103;FS=1.126;MQ=60.00;MQRankSum=0.00;QD=29.46;ReadPosRankSum=-2.515e+00;SOR=0.582;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,25:50:99:0|1:1642537_T_C:1037,0,1154:1642537
chr2	1642545	rs6742039	C	G	7941.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.963e+00;DB;DP=60;ExcessHet=3.0103;FS=3.696;MQ=60.00;MQRankSum=0.00;QD=30.39;ReadPosRankSum=-2.987e+00;SOR=0.365;VQSLOD=20.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,32:60:99:0|1:1642537_T_C:1161,0,1215:1642537
chr2	1642803	.	CGGGTCTCATTTCAAGGTTTCCTGGGTGTGCACCGCCCCTGATGCTCTGAGCT	C	2195.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DP=28;ExcessHet=3.9794;FS=4.619;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=-2.080e-01;SOR=0.272;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,11:28:99:428,0,4684
chr2	1647171	rs6730800	T	C	11698.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673e+00;DB;DP=148;ExcessHet=3.0103;FS=2.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=-2.171e+00;SOR=0.470;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,81:148:99:2008,0,1736
chr2	1648781	rs12467846	G	C	204.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:80,0,29
chr2	1652822	rs1863135	T	G	9820.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-02;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.31;ReadPosRankSum=1.64;SOR=0.693;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,64:113:99:1614,0,1214
chr2	1664654	rs17841813	A	G	8122.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.736e+00;DB;DP=123;ExcessHet=3.9794;FS=1.801;MQ=59.93;MQRankSum=-7.710e-01;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=0.477;SOR=0.575;VQSLOD=2.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,75:123:99:1933,0,1258
chr2	1667267	rs2241455	C	G	4666.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=97;ExcessHet=1.5490;FS=2.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=0.639;SOR=0.918;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,47:97:99:1315,0,1345
chr2	1667310	rs12475392	G	A	9015.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=164;ExcessHet=3.9794;FS=3.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=-1.000e-02;SOR=1.018;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,85:164:99:2083,0,1899
chr2	1669119	rs2161971	A	C	238.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=3.912;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	1677266	rs918953	A	C	604.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=4.047;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr2	1683889	.	A	AGATGGTGTGTGTGTG	704.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.820e-01;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.17;ReadPosRankSum=1.14;SOR=0.622;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,12:25:99:713,0,999
chr2	1683923	rs72763569	G	T	1036.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.745e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.15;ReadPosRankSum=-2.202e+00;SOR=0.804;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,31:49:99:1045,0,657
chr2	1696016	rs2288183	G	A	1300.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.61;SOR=2.765;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:555,42,0
chr2	1696510	rs138859568	AAC	A	4812.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=101;ExcessHet=1.5490;FS=4.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=0.851;SOR=1.060;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,47:101:99:1633,0,1930
chr2	1805748	rs2288180	C	T	214.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.750e-01;DB;DP=3;ExcessHet=1.5490;FS=2.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=0.589;SOR=0.197;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr2	1812792	rs76779761	C	T	678.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.28;ReadPosRankSum=-7.750e-01;SOR=0.640;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,26:66:99:687,0,1212
chr2	1813057	rs12988270	G	T	4081.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=82;ExcessHet=6.9897;FS=1.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-4.130e-01;SOR=0.614;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,43:82:99:1108,0,958
chr2	1813194	rs35794977	G	GA	602.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=6;ExcessHet=3.9794;FS=4.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=-1.393e+00;SOR=2.636;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:242,18,0
chr2	1842968	rs6728368	T	A	3965.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DB;DP=163;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.324;SOR=0.684;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,82:163:99:2035,0,1984
chr2	1843285	rs10196494	A	G	1042.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=1.03;SOR=0.760;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:533,0,429
chr2	1844458	rs4381806	T	C	1122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452e+00;DB;DP=44;ExcessHet=3.9794;FS=1.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=1.12;SOR=0.439;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,22:44:99:564,0,616
chr2	1844652	rs7425544	C	T	1286.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=48;ExcessHet=3.9794;FS=1.882;MQ=60.00;MQRankSum=0.00;QD=13.68;ReadPosRankSum=-8.600e-01;SOR=0.472;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,22:48:99:0|1:1844652_C_T:671,0,1071:1844652
chr2	1844672	.	C	CT	363.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e-01;DP=32;ExcessHet=3.0103;FS=3.567;MQ=60.00;MQRankSum=0.00;QD=11.35;ReadPosRankSum=0.489;SOR=1.445;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,10:32:99:0|1:1844652_C_T:372,0,948:1844652
chr2	1844676	.	C	T	1023.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DP=25;ExcessHet=6.9897;FS=4.713;MQ=59.84;MQRankSum=0.00;QD=13.65;ReadPosRankSum=-4.250e-01;SOR=1.262;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:25:99:348,0,798
chr2	1890070	rs4241294	C	T	1153.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.47;SOR=2.694;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:168,15,0
chr2	1890172	rs146242947	C	T	548.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.940e+00;DB;DP=30;ExcessHet=3.0103;FS=3.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-9.570e-01;SOR=0.204;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,14:30:99:0|1:1890172_C_T:557,0,1105:1890172
chr2	1890173	rs4853824	A	G	1391.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535e+00;DB;DP=32;ExcessHet=6.9897;FS=2.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.053;SOR=0.455;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,15:32:99:0|1:1890172_C_T:557,0,1105:1890172
chr2	1906747	rs36078892	T	C	207.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=0.616;SOR=0.412;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:1906747_T_C:216,0,436:1906747
chr2	1906748	rs145244209	G	A	207.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=-4.640e-01;SOR=0.693;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:1906747_T_C:216,0,436:1906747
chr2	1914255	rs17039160	G	A	1336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=77;ExcessHet=3.0103;FS=3.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=2.23;SOR=1.342;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,46:77:99:1345,0,686
chr2	1915654	rs139211901	G	A	189.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-7.050e-01;SOR=1.022;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:198,0,155
chr2	1915749	rs12988500	A	G	678.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.849e+00;DB;DP=56;ExcessHet=3.0103;FS=4.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=2.10;SOR=0.246;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,25:56:99:687,0,928
chr2	1920880	rs73186664	G	A	374.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=19;ExcessHet=3.0103;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=1.65;SOR=2.303;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:383,0,245
chr2	1926437	rs1529667	G	T	16782.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=0.166;SOR=0.265;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4808,408,0
chr2	1946914	rs3748988	A	G	4596.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116e+00;DB;DP=107;ExcessHet=6.9897;FS=3.517;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.044;SOR=0.878;VQSLOD=6.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1270,0,1362
chr2	1982877	rs2304007	T	G	2298.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664e+00;DB;DP=66;ExcessHet=6.9897;FS=1.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.280;SOR=0.588;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,27:66:99:660,0,1137
chr2	1983374	rs2304008	A	C	3242.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DB;DP=75;ExcessHet=6.9897;FS=2.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.39;SOR=0.556;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,28:75:99:692,0,1399
chr2	1983395	rs2304009	C	T	3402.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607e+00;DB;DP=91;ExcessHet=6.9897;FS=4.032;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.524;SOR=0.504;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,33:91:99:722,0,1668
chr2	1983619	rs7561518	A	G	2122.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=61;ExcessHet=6.9897;FS=2.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.772;SOR=0.500;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:729,0,842
chr2	3193040	rs17682	G	A	1982.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;DB;DP=72;ExcessHet=3.9794;FS=1.357;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.930;SOR=0.543;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:936,0,931
chr2	3196040	rs2242084	A	G	1447.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.46;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=0.132;SOR=0.581;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:742,57,0
chr2	3200948	rs1037467	C	A	1217.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.052;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=0.453;SOR=0.856;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:508,42,0
chr2	3212105	rs4854138	A	G	171.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:126,12,0
chr2	3212247	rs7584823	G	T	1557.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-01;DB;DP=33;ExcessHet=1.5490;FS=1.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=0.875;SOR=1.271;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:394,0,561
chr2	3212704	rs7595702	C	A	3268.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.114e+00;DB;DP=71;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-5.100e-02;SOR=0.669;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,35:71:99:922,0,963
chr2	3212817	rs12467123	C	T	324.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.801;SOR=1.179;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:333,0,333
chr2	3217777	rs11127386	A	C	634.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=26.44;ReadPosRankSum=0.601;SOR=0.976;VQSLOD=5.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:417,33,0
chr2	3217794	rs10865535	T	C	817.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.683e+00;DB;DP=10;ExcessHet=3.0103;FS=2.982;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=0.444;SOR=1.942;VQSLOD=4.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:382,30,0
chr2	3217908	rs11682452	G	C	3137.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.629e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=2.75;SOR=0.768;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1217,120,0
chr2	3260741	rs2694070	G	A	188	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=-1.383e+00;SOR=1.981;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:71,0,37
chr2	3260822	rs2602745	A	G	573.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456e+00;DB;DP=11;ExcessHet=3.9794;FS=1.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=1.29;SOR=0.301;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:161,0,137
chr2	3277884	rs4854162	A	G	592.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=1.86;SOR=0.418;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:15:216,0,15
chr2	3277947	rs2694081	T	A	821.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DB;DP=17;ExcessHet=6.9897;FS=0.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-6.840e-01;SOR=0.896;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:172,0,316
chr2	3278258	.	A	T	335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124e+00;DP=34;ExcessHet=3.0103;FS=1.524;MQ=60.00;MQRankSum=0.00;QD=9.86;ReadPosRankSum=-1.050e-01;SOR=1.085;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:344,0,571
chr2	3322555	rs62121538	T	C	173.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=9;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=0.589;SOR=2.303;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:182,0,107
chr2	3322797	rs12618407	C	A	1170.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288e+00;DB;DP=34;ExcessHet=1.5490;FS=1.227;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=-2.580e-01;SOR=1.110;VQSLOD=6.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,11:34:99:273,0,728
chr2	3322905	rs34135516	A	G	363.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.32;ReadPosRankSum=0.189;SOR=1.981;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:3322905_A_G:110,0,101:3322905
chr2	3322907	rs9309705	A	G	918.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.96;SOR=6.358;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:3322905_A_G:230,18,0:3322905
chr2	3342009	rs3811617	T	C	475.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=-6.190e-01;SOR=1.721;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:188,0,210
chr2	3356849	rs4854122	A	G	1328.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=0.911;SOR=0.957;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,9:18:99:0|1:3356849_A_G:285,0,351:3356849
chr2	3356850	rs12479261	T	C	292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-9.540e-01;SOR=0.693;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,9:18:99:1|0:3356849_A_G:301,0,351:3356849
chr2	3356953	rs2875394	A	T	9887.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=30.24;SOR=1.336;VQSLOD=4.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2749,276,0
chr2	3356995	rs62119517	G	A	1073.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DB;DP=110;ExcessHet=3.0103;FS=2.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=-1.930e-01;SOR=0.895;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,47:110:99:1082,0,1464
chr2	3358458	rs11269308	ATTATGAAGTTAGAT	A	7841.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=1.504;VQSLOD=4.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2468,167,0
chr2	3381189	rs13022433	G	A	300.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.674e+00;DB;DP=24;ExcessHet=3.0103;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.176;SOR=0.105;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:309,0,532
chr2	3392075	rs10865541	T	C	39503.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.614;DB;DP=550;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.352;SOR=0.654;VQSLOD=7.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,547:550:99:17475,1558,0
chr2	3392513	rs12999423	T	C	25394.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.41;DB;DP=217;ExcessHet=3.0103;FS=2.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.59;ReadPosRankSum=0.262;SOR=0.878;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,217:217:99:1|1:3392513_T_C:9572,656,0:3392513
chr2	3392514	rs12999424	T	A	25394.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=215;ExcessHet=3.0103;FS=1.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.86;ReadPosRankSum=0.793;SOR=0.900;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,215:215:99:1|1:3392513_T_C:9572,656,0:3392513
chr2	3393288	rs4476382	A	G	1119.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.224e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.94;ReadPosRankSum=1.28;SOR=2.517;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:3393288_A_G:450,30,0:3393288
chr2	3393289	rs4318418	A	C	1119.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.94;ReadPosRankSum=1.36;SOR=2.517;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:3393288_A_G:450,30,0:3393288
chr2	3393565	rs71396985	C	CAA	6805.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.53;DB;DP=121;ExcessHet=1.5490;FS=3.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=-1.311e+00;SOR=0.991;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,121:121:99:5373,364,0
chr2	3405851	rs62120499	A	G	418.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr2	3425514	rs7558487	G	C	8145.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=1.115;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3030,294,0
chr2	3425948	rs10206964	T	C	3236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=3.258;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:905,72,0
chr2	3428508	rs10166880	T	G	4422.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.67;DB;DP=50;ExcessHet=3.0103;FS=0.965;MQ=59.87;MQRankSum=1.04;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=1.18;SOR=0.876;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1735,150,0
chr2	3447827	rs4482520	T	G	756.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.12;ReadPosRankSum=-6.740e-01;SOR=4.615;VQSLOD=13.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:25:189,0,25
chr2	3503230	rs9309719	A	G	233.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=2.584;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:126,12,0
chr2	3523324	rs10179340	A	G	6289.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=1.179;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2379,243,0
chr2	3599700	rs7563960	G	T	4203.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.651e+00;DB;DP=32;ExcessHet=3.0103;FS=1.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.40;ReadPosRankSum=-7.700e-02;SOR=0.872;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1075,96,0
chr2	3605468	rs12711976	A	G	12953.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.83;SOR=0.857;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4230,405,0
chr2	3623540	rs3087873	A	G	114.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=2.833;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	3625175	rs72767176	T	C	731.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.33;ReadPosRankSum=-6.740e-01;SOR=4.294;VQSLOD=13.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:3625175_T_C:135,9,0:3625175
chr2	3625179	rs72767177	C	T	762.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.00;ReadPosRankSum=0.366;SOR=3.716;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:3625175_T_C:135,9,0:3625175
chr2	3627648	rs7576238	G	C	6960.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=0.830;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2017,192,0
chr2	3652616	rs3769507	G	C	2013.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=76;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.99;ReadPosRankSum=-2.050e-01;SOR=0.702;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,27:76:99:637,0,1179
chr2	3653576	rs7604806	A	G	1678.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=34;ExcessHet=6.9897;FS=2.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-8.870e-01;SOR=1.091;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:428,0,611
chr2	3653844	rs3739147	T	C	3103.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590e-01;DB;DP=70;ExcessHet=6.9897;FS=1.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-2.670e-01;SOR=0.765;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,36:70:99:910,0,897
chr2	3660752	rs3811531	T	C	2255.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.651e+00;DB;DP=43;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=0.267;SOR=0.683;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:640,0,734
chr2	3661181	rs11123651	T	C	257.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=0.930;SOR=0.818;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:53:53,0,110
chr2	3685046	rs3811528	T	C	2409.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DB;DP=38;ExcessHet=6.9897;FS=4.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.161;SOR=1.153;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:485,0,518
chr2	3685074	rs3811527	A	G	2823.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411e+00;DB;DP=55;ExcessHet=6.9897;FS=0.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.012;SOR=0.799;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:668,0,777
chr2	3691669	rs114716171	C	T	3740.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.389e+00;DB;DP=311;ExcessHet=3.0103;FS=1.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=2.81;SOR=0.580;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,145:311:99:3749,0,4732
chr2	3718511	rs111587931	C	CT	65.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=0.566;SOR=0.495;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:74:74,0,106
chr2	3718645	.	C	T	487.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=27;ExcessHet=3.0103;FS=4.407;MQ=60.00;MQRankSum=0.00;QD=18.05;ReadPosRankSum=0.301;SOR=0.172;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:496,0,369
chr2	3718646	rs60644898	G	A	340.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.210e-01;DB;DP=27;ExcessHet=3.0103;FS=4.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-2.510e-01;SOR=1.845;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,10:27:99:0|1:3718646_G_A:349,0,684:3718646
chr2	3718655	rs59726279	A	G	394.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DB;DP=31;ExcessHet=3.0103;FS=3.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-6.090e-01;SOR=1.807;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,12:31:99:0|1:3718646_G_A:403,0,709:3718646
chr2	3718692	rs13409104	C	T	597.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=53;ExcessHet=3.0103;FS=4.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-5.420e-01;SOR=1.436;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:606,0,780
chr2	3718985	rs34086816	A	G	460.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.980e-01;DB;DP=25;ExcessHet=3.0103;FS=2.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.641;SOR=0.257;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:469,0,190
chr2	3721632	rs13390724	G	A	549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.88;ReadPosRankSum=-1.024e+00;SOR=0.765;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,13:23:99:0|1:3721632_G_A:558,0,378:3721632
chr2	3721637	rs150631803	ATCTT	A	578.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=-9.350e-01;SOR=0.712;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,15:27:99:0|1:3721632_G_A:587,0,447:3721632
chr2	3721729	rs12105179	A	G	1737.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=1.07;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-2.700e-02;SOR=0.650;VQSLOD=2.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,32:50:99:770,0,425
chr2	3721821	rs13406032	A	G	490.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=35;ExcessHet=3.0103;FS=1.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-1.067e+00;SOR=0.426;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:499,0,373
chr2	3721936	rs13401122	C	A	99.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:108,0,63
chr2	3725964	rs72769388	C	T	1256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=117;ExcessHet=3.0103;FS=2.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-3.330e-01;SOR=1.002;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,48:117:99:1265,0,1820
chr2	3726163	rs2043080	T	C	2399.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=116;ExcessHet=3.9794;FS=0.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.956;SOR=0.777;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,49:116:99:1300,0,1847
chr2	3744728	rs2303902	A	G	96.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=2.52;SOR=0.283;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:105,0,230
chr2	3745199	.	CTCTG	C	105.79	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.14;SOR=2.833;VQSLOD=4.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	3749084	rs11689171	T	C	1082.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=95;ExcessHet=3.0103;FS=8.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.500;SOR=1.312;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,41:95:99:1091,0,1269
chr2	3749151	rs201406139	GGAA	G	2238.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=75;ExcessHet=3.9794;FS=1.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=1.04;SOR=0.877;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,37:75:99:1440,0,1633
chr2	3749267	rs11681270	G	A	420.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=-5.260e-01;SOR=1.609;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:429,0,195
chr2	3751213	rs62106595	C	T	266.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-02;DB;DP=25;ExcessHet=3.0103;FS=1.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-4.440e-01;SOR=1.426;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:275,0,459
chr2	3751705	rs35537698	C	T	242.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-2.330e-01;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:75,0,33
chr2	3756073	rs17505481	G	A	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=-5.100e-01;SOR=1.387;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:99:465,0,124
chr2	3774436	rs357940	C	T	2922.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.75;SOR=2.975;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1129,107,0
chr2	3774448	rs12711970	T	C	2770.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.750e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.12;ReadPosRankSum=-5.330e-01;SOR=0.857;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1310,120,0
chr2	3774519	rs357941	T	C	6475.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=1.151;VQSLOD=19.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2315,219,0
chr2	3789383	rs2249380	A	C	275.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.41;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:72,0,33
chr2	3800383	rs357969	C	T	7540.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=147;ExcessHet=3.9794;FS=1.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=-1.820e-01;SOR=0.783;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,63:147:99:1551,0,2152
chr2	3800496	rs357968	C	T	4327.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.327e+00;DB;DP=73;ExcessHet=3.9794;FS=1.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=-4.930e-01;SOR=0.878;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,23:73:99:492,0,1557
chr2	3815250	rs10180257	A	G	2319.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=1.12;SOR=0.679;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,23:31:99:649,0,108
chr2	3815532	rs11404437	A	AT	521.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.050e-01;DB;DP=7;ExcessHet=3.0103;FS=4.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=1.31;SOR=0.198;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:185,21,0
chr2	4135981	rs1024026	C	T	1600.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.18;DB;DP=38;ExcessHet=1.5490;FS=1.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=-2.300e-01;SOR=0.916;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1125,113,0
chr2	4136145	rs1024027	A	G	706.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.956;DB;DP=17;ExcessHet=1.5490;FS=6.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=-2.710e-01;SOR=2.215;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:558,51,0
chr2	5834249	rs10676727	G	GTGA	3518.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e-01;DB;DP=31;ExcessHet=3.9794;FS=1.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=-2.600e-01;SOR=0.495;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,18:31:99:690,0,508
chr2	6790537	rs10192411	A	G	3483.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DB;DP=88;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-1.081e+00;SOR=0.665;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,41:88:99:997,0,1236
chr2	7001119	rs2712046	G	A	442.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.36;SOR=4.977;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	7001233	rs3085147	ACG	A	2606.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.07;SOR=1.850;VQSLOD=2.34;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:7001233_ACG_A:469,33,0:7001233
chr2	7001249	rs202012587	ACACACACACC	A	3278.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.17;SOR=2.010;VQSLOD=4.51;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:49:1|1:7001233_ACG_A:658,49,0:7001233
chr2	7003879	rs2712039	G	A	1191.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.40;SOR=3.981;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr2	7003902	rs2712040	G	A	819.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=6.091;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	7005069	rs2595172	C	T	15359.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.54;SOR=1.989;VQSLOD=5.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:5049,464,0
chr2	7005369	rs11678810	A	G	16519.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=0.926;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4810,447,0
chr2	7005992	rs4669108	C	T	3658.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.20;SOR=5.046;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:717,54,0
chr2	7017903	rs10182815	A	G	4377.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.87;SOR=1.628;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1633,144,0
chr2	7019079	rs6704746	A	G	3777.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=1.850;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1117,111,0
chr2	7027323	rs9917321	T	A	5624.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.89;SOR=2.431;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1928,185,0
chr2	7035733	rs62108131	A	G	65.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=2.303;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	7046272	rs33969638	TACACAC	T	2479.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=58.67;QD=33.73;SOR=3.682;VQSLOD=4.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:785,54,0
chr2	7050233	.	T	C	224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.200e-02;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.02;ReadPosRankSum=1.63;SOR=0.495;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:233,0,283
chr2	7050426	rs6725201	G	C	2367.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220e-01;DB;DP=95;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-1.460e-01;SOR=0.704;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1126,0,1102
chr2	7050483	rs145080587	A	ATGTGTG	2823.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=1.36;QD=28.82;ReadPosRankSum=0.102;SOR=0.696;VQSLOD=0.525;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,7:31:99:269,0,989
chr2	7076397	rs771301	T	A	42.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.70;ReadPosRankSum=0.140;SOR=0.132;VQSLOD=22.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:9:51:51,0,255
chr2	7076975	rs55971680	A	AGTGTGT,AGTGTGTGTGT	1658.15	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.266;DB;DP=23;ExcessHet=3.0103;FS=2.450;MQ=59.68;MQRankSum=0.00;QD=23.03;ReadPosRankSum=1.39;SOR=0.412;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,11,5:23:99:832,223,192,480,0,474
chr2	7130516	rs373910830	TACACACACACAC	T	1586.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.670e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.55;MQRankSum=1.74;QD=26.41;ReadPosRankSum=0.494;SOR=0.970;VQSLOD=0.549;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,13:18:99:0|1:7130516_TACACACACACAC_T:416,0,142:7130516
chr2	7130533	.	A	G	743.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333e+00;DP=18;ExcessHet=6.9897;FS=1.243;MQ=59.51;MQRankSum=0.993;QD=14.88;ReadPosRankSum=-1.282e+00;SOR=0.473;VQSLOD=-7.208e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,14:18:99:0|1:7130516_TACACACACACAC_T:418,0,109:7130516
chr2	7130599	rs34954937	CATATA	C	355.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.28;ReadPosRankSum=0.524;SOR=2.494;VQSLOD=5.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr2	7136926	rs11898648	C	A	58.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:65:65,0,152
chr2	7137067	rs364891	A	G	1020.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.681;SOR=1.022;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:265,0,292
chr2	7137435	rs10495548	C	T	390.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=-3.030e-01;SOR=1.751;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:223,0,108
chr2	7154632	rs309325	T	C	10896.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=1.146;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4356,432,0
chr2	7154826	rs58700190	A	AT	3609.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034e+00;DB;DP=82;ExcessHet=3.9794;FS=0.999;MQ=60.00;MQRankSum=0.00;QD=14.16;ReadPosRankSum=-1.640e+00;SOR=0.770;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,34:82:99:642,0,1092
chr2	7160439	rs4669127	G	A	924.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380e+00;DB;DP=11;ExcessHet=3.9794;FS=7.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=-1.750e-01;SOR=2.910;VQSLOD=18.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:214,0,183
chr2	7170388	rs58324246	C	CTG,CTGTG	3786.13	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.550e-01;DB;DP=37;ExcessHet=3.0103;FS=1.803;MQ=59.45;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=-6.000e-02;SOR=0.536;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,16,18:37:99:1117,407,360,273,0,322
chr2	7243449	rs10617957	AGTGTGT	A	5588.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=32.42;SOR=1.875;VQSLOD=5.57;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1450,102,0
chr2	7386172	.	TGCATGTGTGTGC	T	1330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.79;ReadPosRankSum=-1.304e+00;SOR=0.632;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,35:64:99:0|1:7386172_TGCATGTGTGTGC_T:1339,0,1149:7386172
chr2	7386192	rs72770055	T	C	1759.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.79;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=1.65;SOR=0.677;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,32:72:99:1|0:7386172_TGCATGTGTGTGC_T:851,0,1498:7386172
chr2	7403641	rs111726098	T	TACACAC	1974.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=36;ExcessHet=3.0103;FS=1.876;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=1.15;SOR=0.929;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,8:36:99:301,0,1667
chr2	7421569	rs142314951	C	CTG	1296.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265e+00;DB;DP=33;ExcessHet=6.9897;FS=11.373;MQ=60.00;MQRankSum=0.00;QD=11.28;ReadPosRankSum=0.00;SOR=0.108;VQSLOD=1.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,12:33:99:327,0,648
chr2	7471732	rs6732990	G	A	1275.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191e+00;DB;DP=14;ExcessHet=3.9794;FS=4.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=0.679;SOR=2.511;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:235,0,250
chr2	7540646	rs5829105	C	CA	3741.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DB;DP=87;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=1.07;SOR=0.697;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1334,0,1270
chr2	7540695	rs2163257	C	G	3359.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.403e+00;DB;DP=79;ExcessHet=6.9897;FS=0.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-9.780e-01;SOR=0.658;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1140,0,835
chr2	7540784	rs4669196	T	C	1423.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=22;ExcessHet=6.9897;FS=8.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=-7.130e-01;SOR=0.169;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:390,0,264
chr2	7594516	rs1466671	G	A	7907.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=150;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.444;SOR=0.676;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,78:150:99:1880,0,1574
chr2	8064702	rs12052445	C	T	464.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.17;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	8108588	rs41008	G	T	491.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.42;ReadPosRankSum=-9.060e-01;SOR=1.508;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:271,21,0
chr2	8108614	rs3214379	GT	G	127.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=3.258;VQSLOD=5.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr2	8178735	rs1364054	A	G	6282.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.505;DB;DP=65;ExcessHet=3.0103;FS=0.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=0.320;SOR=0.617;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2158,195,0
chr2	8178798	rs62104935	C	T	5054.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.091e+00;DB;DP=53;ExcessHet=3.0103;FS=5.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.78;ReadPosRankSum=0.160;SOR=0.362;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1646,157,0
chr2	8822912	rs3845751	A	C	7380.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=59.73;MQRankSum=0.00;QD=32.63;ReadPosRankSum=1.32;SOR=0.489;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2662,212,0
chr2	8823163	rs80280742	T	C	245.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.360;SOR=0.495;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:254,0,318
chr2	8866844	rs13024421	C	G	297.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=2.37;SOR=0.446;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:86:238,0,86
chr2	8870814	rs6431959	A	G	3342.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.82;SOR=1.735;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1131,99,0
chr2	8871342	rs1044280	C	A	3335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.010e-01;DB;DP=126;ExcessHet=3.9794;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.932;SOR=0.613;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,58:126:99:1500,0,1976
chr2	8887551	rs4669335	C	A	277.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.07;SOR=4.174;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	8887910	rs1978841	A	T	1607.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=2.01;SOR=0.984;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:314,0,163
chr2	8898036	rs6750682	A	G	233.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=0.390;SOR=1.179;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:159,0,298
chr2	8898089	rs4669336	A	T	1296.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.10;SOR=3.981;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:301,21,0
chr2	8910717	rs10929557	T	C	210.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=58.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=1.26;SOR=0.473;VQSLOD=1.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:66:75,0,66
chr2	8910736	rs144280481	GT	G	383.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.27;MQRankSum=-3.190e-01;QD=9.14;ReadPosRankSum=-6.540e-01;SOR=1.022;VQSLOD=0.314;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:26:110,0,26
chr2	8910987	rs12476359	A	T	3668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=1.777;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:880,93,0
chr2	8911010	rs17630893	T	C	1758.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=23;ExcessHet=3.9794;FS=1.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.589;SOR=0.438;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:331,0,292
chr2	8916847	rs4669338	A	T	5858.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.48;SOR=2.057;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1579,144,0
chr2	8942966	rs112585756	T	C	767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;DB;DP=41;ExcessHet=3.0103;FS=7.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=2.43;SOR=2.348;VQSLOD=18.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:776,0,398
chr2	8943291	rs2356658	G	A	1112.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.80;SOR=6.804;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr2	8953644	rs17631263	A	C	139.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=0.674;SOR=0.069;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:78,0,67
chr2	8957817	rs181968246	C	T	1161.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=106;ExcessHet=3.0103;FS=4.837;MQ=60.00;MQRankSum=0.00;QD=10.96;ReadPosRankSum=2.33;SOR=0.532;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,46:106:99:1170,0,1410
chr2	8966170	rs1978840	T	C	178.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.91;SOR=3.611;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	8998624	rs10929559	A	G	5219.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.46;SOR=1.833;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1787,162,0
chr2	9419411	rs10193043	G	A	5349.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.470e-01;DB;DP=52;ExcessHet=3.0103;FS=6.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.31;ReadPosRankSum=0.560;SOR=1.201;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:9419411_G_A:2190,162,0:9419411
chr2	9419415	rs10170149	C	T	3216.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DB;DP=54;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.06;ReadPosRankSum=0.044;SOR=0.608;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,32:54:99:0|1:9419411_G_A:881,0,558:9419411
chr2	9458460	rs3811599	A	G	460.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.966e+00;DB;DP=21;ExcessHet=3.9794;FS=2.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.564;SOR=0.230;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:280,0,376
chr2	9460234	rs17522163	G	A	599.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DB;DP=21;ExcessHet=3.9794;FS=1.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=1.61;SOR=0.395;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,14:21:99:463,0,166
chr2	9460600	rs75388003	G	A	352.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=19;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=-1.158e+00;SOR=0.275;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:361,0,243
chr2	9463454	rs12475160	C	T	3747.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=74;ExcessHet=1.5490;FS=1.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=-5.110e-01;SOR=0.499;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,47:74:99:1136,0,626
chr2	9463635	rs13384605	T	C	195.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=-1.383e+00;SOR=1.609;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:76,0,73
chr2	9467727	rs7582857	A	G	337.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=0.366;SOR=1.112;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:155,0,132
chr2	9467815	rs7569295	C	T	1102.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114e+00;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=1.51;SOR=0.685;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:433,0,345
chr2	9475337	rs4392227	A	G	1494.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.070e-01;DB;DP=62;ExcessHet=3.9794;FS=4.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-6.850e-01;SOR=1.036;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:600,0,941
chr2	9484542	rs6724103	C	T	1631.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.530e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=-8.810e-01;SOR=0.548;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:707,59,0
chr2	9484561	rs79044067	TAAAA	T	2861.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.136;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.29;ReadPosRankSum=-3.110e-01;SOR=0.979;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1448,99,0
chr2	9491017	rs4669385	C	T	4079.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.713e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=0.504;SOR=0.733;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1763,147,0
chr2	9496291	rs2709591	T	C	8196.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009e+00;DB;DP=118;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.640;SOR=0.744;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,58:118:99:1494,0,1722
chr2	9514917	rs33930824	C	T	945.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=33;ExcessHet=3.9794;FS=1.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=1.37;SOR=0.490;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:409,0,469
chr2	9540360	rs186963174	C	T	111.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.24;ReadPosRankSum=1.65;SOR=1.022;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,3:5:6:121,6,0
chr2	9547171	rs10929579	G	A	4860.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=64;ExcessHet=3.9794;FS=2.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=1.79;SOR=0.965;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,31:64:99:791,0,792
chr2	9547363	rs10929580	C	A	892.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=12;ExcessHet=3.9794;FS=4.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=-2.720e-01;SOR=1.981;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:207,0,188
chr2	9548026	rs3841084	T	TG	395.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=7;ExcessHet=6.9897;FS=2.304;MQ=60.00;MQRankSum=0.00;QD=9.66;ReadPosRankSum=-3.660e-01;SOR=0.260;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:37:37,0,109
chr2	9552379	rs10929581	C	T	1251.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-1.650e-01;SOR=0.753;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,12:30:99:0|1:9552379_C_T:374,0,970:9552379
chr2	9552383	rs112462761	A	AT	982.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DB;DP=32;ExcessHet=6.9897;FS=1.988;MQ=60.00;MQRankSum=0.00;QD=10.24;ReadPosRankSum=0.302;SOR=1.007;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,12:32:99:0|1:9552379_C_T:374,0,970:9552379
chr2	9554075	rs10199974	T	G	795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=0.231;SOR=2.303;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:29:176,0,29
chr2	9554255	rs10208358	G	A	2799.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=-1.306e+00;SOR=0.701;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:456,0,633
chr2	9554280	rs12474647	A	T	2077.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=53;ExcessHet=6.9897;FS=0.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.114;SOR=0.766;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:627,0,698
chr2	9554461	rs10185646	C	A	1554.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=0.563;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:219,0,370
chr2	9558905	.	CT	C	309.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.600e-02;DP=27;ExcessHet=6.9897;FS=2.266;MQ=59.91;MQRankSum=0.00;QD=3.26;ReadPosRankSum=-4.100e-02;SOR=0.386;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,5:27:21:21,0,372
chr2	9569972	rs7589401	A	T	3373.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572e+00;DB;DP=73;ExcessHet=6.9897;FS=1.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.08;SOR=0.615;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,41:73:99:1005,0,818
chr2	9571054	rs2002044	C	T	1082.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=-1.189e+00;SOR=0.790;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:437,0,236
chr2	9572888	rs12478467	A	T	700.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-6.130e-01;SOR=0.650;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:234,0,208
chr2	9572928	rs34003003	C	T	400.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.414;SOR=0.460;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:94:94,0,165
chr2	9576553	rs6432003	T	C	1022.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847e+00;DB;DP=20;ExcessHet=6.9897;FS=4.253;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-3.950e-01;SOR=1.496;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:359,0,267
chr2	9580466	rs17589193	C	G	504.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.405e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.497;SOR=0.392;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:159,0,165
chr2	9580540	rs111411247	G	GT	1527.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.890e-01;DB;DP=27;ExcessHet=6.9897;FS=2.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-2.340e-01;SOR=0.403;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:454,0,343
chr2	9583922	rs11681316	A	G	1779.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240e-01;DB;DP=27;ExcessHet=6.9897;FS=1.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=0.422;SOR=0.523;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:407,0,344
chr2	9593064	rs1128215	A	G	448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DB;DP=50;ExcessHet=3.0103;FS=1.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=0.674;SOR=0.892;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,20:50:99:457,0,776
chr2	9597276	.	ATGTG	A,ATGTGTG	566.13	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.621;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.79;MQRankSum=0.00;QD=16.65;ReadPosRankSum=1.52;SOR=0.693;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,3,5:12:68:173,72,287,68,0,145
chr2	9599848	rs7570618	A	G	57.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=4.7712;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.19;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,1:3:36:0|1:9599848_A_G:36,0,81:9599848
chr2	9599865	rs7570625	A	G	79.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:58:0|1:9599848_A_G:58,0,78:9599848
chr2	9612901	rs4622691	A	C	338.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=5;ExcessHet=6.9897;FS=3.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=-2.530e-01;SOR=0.160;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:118,0,28
chr2	9613289	rs2001658	T	C	466.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=-1.016e+00;SOR=1.022;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:186,0,211
chr2	9613322	rs149135873	C	G	108.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-3.280e-01;SOR=0.941;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:117,0,113
chr2	9613328	rs2001659	G	A	311.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=-4.310e-01;SOR=1.112;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:58:58,0,162
chr2	9614523	rs13411809	G	A	530.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=2.15;SOR=1.270;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:181,0,145
chr2	9615235	rs190739313	G	A	512.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224e+00;DB;DP=46;ExcessHet=3.0103;FS=5.131;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=1.72;SOR=0.204;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:521,0,659
chr2	9615556	rs6432007	T	C	1095.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.009e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.872;SOR=0.722;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:171,0,399
chr2	9616035	rs7591166	A	G	977.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.453e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.00;SOR=0.605;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:415,0,182
chr2	9616301	rs3831465	TAGG	T	1292.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=20;ExcessHet=6.9897;FS=3.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=1.17;SOR=1.700;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:390,0,481
chr2	9621683	rs2276337	G	A	609.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=19;ExcessHet=3.9794;FS=3.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.11;SOR=1.966;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:214,0,341
chr2	9624794	rs17524376	T	A	258.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=14;ExcessHet=4.7712;FS=3.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.792;SOR=0.098;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:207,0,254
chr2	9630231	rs6705408	C	T	776.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=0.304;SOR=0.495;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:83:83,0,398
chr2	9630244	rs3833563	AT	A	1067.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.450e-01;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-5.520e-01;SOR=0.648;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,6:25:99:139,0,601
chr2	9631340	rs10495562	T	C	1846.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=36;ExcessHet=6.9897;FS=2.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.176;SOR=0.931;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:454,0,470
chr2	9633137	rs4622692	T	G	2290.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;DB;DP=51;ExcessHet=6.9897;FS=2.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-7.730e-01;SOR=0.572;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:640,0,667
chr2	9634856	rs1048610	A	G	1731.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DB;DP=55;ExcessHet=6.9897;FS=6.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=0.750;SOR=0.720;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:624,0,628
chr2	9637085	rs12995571	C	G	288.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=6;ExcessHet=6.9897;FS=4.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:98:98,0,109
chr2	9642478	rs34367192	C	T	547.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.408;SOR=0.468;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:109,0,166
chr2	9642521	rs13031491	C	T	337.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=0.652;SOR=1.609;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:101,0,122
chr2	9649966	rs11891922	A	G	913.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=-5.450e-01;SOR=0.733;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:150,0,146
chr2	9650350	rs35431407	C	CATAA	4992.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=87;ExcessHet=6.9897;FS=1.190;MQ=60.00;MQRankSum=0.00;QD=22.29;ReadPosRankSum=-1.640e+00;SOR=0.601;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,50:87:99:1960,0,2233
chr2	9661184	rs4328603	T	C	1373.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910e-01;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=0.086;SOR=0.898;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:466,0,303
chr2	9661589	rs4278906	C	T	532.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.741;SOR=0.906;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:69:180,0,69
chr2	9662410	rs35744046	T	C	2367.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.810e-01;DB;DP=33;ExcessHet=6.9897;FS=8.343;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.790;SOR=0.315;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:376,0,500
chr2	9695906	rs12692386	A	G	1384.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.170e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=1.37;SOR=2.030;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:130,0,289
chr2	9728574	rs67724256	A	G	1273.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DB;DP=68;ExcessHet=3.9794;FS=0.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.105;SOR=0.515;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,29:68:99:790,0,1016
chr2	9983591	rs35818430	A	AG	9271.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=59.98;QD=33.20;SOR=0.743;VQSLOD=4.67;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3361,271,0
chr2	9983686	rs2303914	G	T	3506.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.500e-01;DB;DP=75;ExcessHet=3.9794;FS=1.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=1.27;SOR=0.520;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2217,222,0
chr2	9983716	rs385513	A	C	3572.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=53;ExcessHet=3.0103;FS=1.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.29;ReadPosRankSum=0.333;SOR=0.494;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1882,159,0
chr2	9989442	rs16867195	A	G	5472.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.975;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=-1.104e+00;SOR=0.702;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1907,149,0
chr2	9989762	rs287989	T	C	806.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.44;SOR=5.994;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:9989762_T_C:307,21,0:9989762
chr2	9989763	rs4143793	G	T	653.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.940e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.40;ReadPosRankSum=-2.189e+00;SOR=2.948;VQSLOD=18.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:9989762_T_C:307,21,0:9989762
chr2	9991527	rs16867196	A	T	477.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=0.619;SOR=1.609;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr2	9991556	rs287991	G	A	1338.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.01;SOR=5.784;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:419,33,0
chr2	9994288	rs4669471	C	G	1449.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.95;ReadPosRankSum=0.103;SOR=1.848;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:696,51,0
chr2	10008872	rs12623017	A	G	2990.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;DB;DP=32;ExcessHet=3.0103;FS=9.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=-5.930e-01;SOR=2.037;VQSLOD=19.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1140,96,0
chr2	10015879	rs12611655	A	G	1311.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=-3.280e-01;SOR=2.038;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:394,27,0
chr2	10044827	rs564933	G	A	721.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=7;ExcessHet=3.0103;FS=2.900;MQ=60.00;MQRankSum=0.00;QD=26.73;ReadPosRankSum=0.253;SOR=1.893;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:277,21,0
chr2	10044875	rs565683	A	G	1735.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=3.830;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:781,69,0
chr2	10044941	rs450192	G	T	5318.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.433e+00;DB;DP=61;ExcessHet=3.0103;FS=0.803;MQ=60.00;MQRankSum=0.00;QD=26.86;ReadPosRankSum=-7.000e-03;SOR=0.604;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1888,183,0
chr2	10045014	rs400917	C	T	12708.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.900e-02;DB;DP=111;ExcessHet=3.0103;FS=8.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.94;ReadPosRankSum=0.294;SOR=0.350;VQSLOD=19.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,111:111:99:1|1:10045014_C_T:4838,337,0:10045014
chr2	10045024	rs396190	G	A	12800.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.834e+00;DB;DP=111;ExcessHet=3.0103;FS=7.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.14;ReadPosRankSum=-2.210e-01;SOR=0.388;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,111:111:99:1|1:10045014_C_T:4808,334,0:10045014
chr2	10045113	rs116114439	C	T	2840.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e+00;DB;DP=85;ExcessHet=3.9794;FS=3.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=1.73;SOR=0.503;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,43:85:99:1129,0,1197
chr2	10045147	rs448327	A	G	6196.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;DB;DP=64;ExcessHet=3.0103;FS=2.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-1.740e-01;SOR=0.504;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2135,192,0
chr2	10050947	rs1054561	T	C	10385.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.235e+00;DB;DP=130;ExcessHet=3.0103;FS=1.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=-1.099e+00;SOR=0.923;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4181,390,0
chr2	10050960	rs1054565	A	G	9498.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=116;ExcessHet=3.0103;FS=3.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=-1.265e+00;SOR=0.952;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3727,348,0
chr2	10051053	rs10495576	G	C	4557.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.10;DB;DP=38;ExcessHet=3.0103;FS=6.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=0.473;SOR=1.618;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1462,114,0
chr2	10051161	rs2241665	T	C	811.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.522e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=-3.530e-01;SOR=0.968;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:304,24,0
chr2	10053412	rs12467598	C	T	6493.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;DB;DP=71;ExcessHet=3.0103;FS=0.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=-6.720e-01;SOR=0.756;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2246,213,0
chr2	10053610	rs1132838	A	G	394.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.28;ReadPosRankSum=-2.720e-01;SOR=1.911;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr2	10058846	rs3815977	A	G	255.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.94;SOR=1.863;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:187,18,0
chr2	10059620	rs1820966	G	C	397.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=3;ExcessHet=3.9794;FS=5.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=1.24;SOR=3.180;VQSLOD=18.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr2	10059770	rs1820965	G	T	3867.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.531e+00;DB;DP=36;ExcessHet=3.0103;FS=8.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=-5.440e-01;SOR=0.235;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1242,108,0
chr2	10092933	rs141313862	CTTAG	C	649.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DB;DP=17;ExcessHet=6.9897;FS=2.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.781;SOR=2.004;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,6:17:99:219,0,630
chr2	10094992	rs2303918	A	G	5532.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.590e-01;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.80;ReadPosRankSum=1.73;SOR=0.894;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1860,140,0
chr2	10095185	rs16867251	T	C	7285.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.837e+00;DB;DP=118;ExcessHet=3.9794;FS=0.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.224;SOR=0.734;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3777,354,0
chr2	10101128	rs77464454	A	G	1033.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=26;ExcessHet=3.9794;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=1.80;SOR=0.209;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:455,0,362
chr2	10101394	rs201016543	C	T	1098.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=107;ExcessHet=3.0103;FS=3.654;MQ=60.00;MQRankSum=0.00;QD=10.26;ReadPosRankSum=-1.773e+00;SOR=1.061;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,44:107:99:1107,0,1601
chr2	10101468	rs16867256	A	G	6833.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.240e-01;DB;DP=78;ExcessHet=3.0103;FS=6.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.47;ReadPosRankSum=-5.950e-01;SOR=1.111;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2524,234,0
chr2	10101669	rs16867257	T	C	662.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.515e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=0.241;SOR=2.215;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:139,12,0
chr2	10101686	rs138724700	AT	A	250.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.68;ReadPosRankSum=0.366;SOR=1.473;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr2	10104504	rs41264185	C	T	1595.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e-01;DB;DP=55;ExcessHet=3.9794;FS=2.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.840;SOR=0.467;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:709,0,739
chr2	10105535	rs41264203	T	C	7741.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.729;DB;DP=112;ExcessHet=3.0103;FS=1.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=0.129;SOR=0.602;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3611,336,0
chr2	10105584	.	A	AT	951.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DP=50;ExcessHet=6.9897;FS=0.800;MQ=59.99;MQRankSum=0.00;QD=7.74;ReadPosRankSum=-3.000e-01;SOR=0.580;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,24:50:99:452,0,499
chr2	10105644	rs11884250	T	C	1832.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=24;ExcessHet=3.0103;FS=5.421;MQ=59.91;MQRankSum=-9.610e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.05;ReadPosRankSum=0.463;SOR=2.226;VQSLOD=0.602;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:990,72,0
chr2	10126123	rs1835424	A	T	3394.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=44;ExcessHet=3.9794;FS=4.756;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=0.048;SOR=0.335;VQSLOD=6.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,24:44:99:699,0,572
chr2	10126330	rs2303920	G	A	5718.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=82;ExcessHet=3.9794;FS=2.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.570;SOR=0.882;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,36:82:99:922,0,1277
chr2	10126416	rs16867274	A	G	3752.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214e+00;DB;DP=37;ExcessHet=3.0103;FS=1.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=-8.670e-01;SOR=1.221;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:331,0,655
chr2	10130973	rs12475243	T	G	2049.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=1.16;SOR=0.627;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:371,0,342
chr2	10131061	rs35863027	AG	A	540.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.54;ReadPosRankSum=0.674;SOR=0.756;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:55:56,0,55
chr2	10131078	rs1430621	C	A	539.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=0.00;SOR=1.828;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:72,0,35
chr2	10131094	rs1367388	T	C	413.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.49;ReadPosRankSum=0.00;SOR=1.493;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:67,0,32
chr2	10131122	rs1367389	C	T	206.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=3.912;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr2	10133284	rs12618788	C	T	1404.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275e+00;DB;DP=55;ExcessHet=6.9897;FS=10.654;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=0.285;SOR=1.460;VQSLOD=3.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,10:55:99:230,0,1167
chr2	10133843	rs12472800	C	T	1874.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=29;ExcessHet=6.9897;FS=2.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=0.135;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,18:29:99:541,0,254
chr2	10139017	rs33958552	C	CAT	399.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.38;SOR=0.693;VQSLOD=3.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:302,24,0
chr2	10140651	rs2163338	A	G	6762.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769e+00;DB;DP=197;ExcessHet=6.9897;FS=1.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.291;SOR=0.805;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,98:197:99:2266,0,2470
chr2	10140981	rs934303	C	T	740.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=-2.830e-01;SOR=1.085;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:382,0,134
chr2	10188649	rs11687357	A	T	16916.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.220e-01;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=-5.800e-02;POSITIVE_TRAIN_SITE;QD=31.62;ReadPosRankSum=-5.810e-01;SOR=0.472;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,151:152:99:4787,417,0
chr2	10192851	rs34206941	G	GTT	419.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.27;ReadPosRankSum=0.00;SOR=3.767;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr2	10225241	rs6432058	C	T	4757.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.73;SOR=3.082;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1672,150,0
chr2	10226306	rs34098251	G	GC	5688.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.89;SOR=1.171;VQSLOD=4.27;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2335,192,0
chr2	10262920	rs1130609	T	G	18684.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=237;ExcessHet=3.0103;FS=0.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=0.030;SOR=0.899;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,237:237:99:7845,712,0
chr2	10264057	rs6432065	T	C	4751.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.385e+00;DB;DP=50;ExcessHet=3.0103;FS=0.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=0.370;SOR=0.556;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1440,150,0
chr2	10265144	rs72544298	A	G	254.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;DB;DP=13;ExcessHet=3.0103;FS=3.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=0.707;SOR=0.141;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:263,0,161
chr2	10267211	rs61754180	T	C	758.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;DB;DP=56;ExcessHet=3.0103;FS=2.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.688;SOR=0.368;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,28:56:99:767,0,740
chr2	10281903	rs5829249	G	GC	3810.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.98;SOR=6.556;VQSLOD=5.31;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1507,129,0
chr2	10282147	rs11896140	T	C	6477.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=171;ExcessHet=6.9897;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-4.260e-01;SOR=0.766;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,83:171:99:2239,0,2241
chr2	10282679	rs59000721	G	GC	695.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=2.948;VQSLOD=5.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:371,30,0
chr2	10332539	rs13392520	A	G	602.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=0.00;SOR=0.922;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:84:282,0,84
chr2	10332876	rs56228505	AC	A	823.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=29;ExcessHet=3.9794;FS=1.008;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.218;SOR=0.503;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,20:29:99:505,0,188
chr2	10350861	.	G	T	31.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.53;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
chr2	10560335	.	C	CT,CTTT	737.51	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.110e-01;DP=34;ExcessHet=3.9794;FS=1.693;MQ=59.64;MQRankSum=0.519;QD=13.41;ReadPosRankSum=0.597;SOR=0.484;VQSLOD=0.489;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:7,10,6:34:11:321,99,194,11,0,390
chr2	10563236	rs55737425	G	A	3420.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.095e+00;DB;DP=172;ExcessHet=3.9794;FS=0.834;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=1.80;SOR=0.641;VQSLOD=5.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,74:172:99:1538,0,2567
chr2	10566792	rs2270306	C	G	3075.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=142;ExcessHet=3.9794;FS=5.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-2.300e-02;SOR=1.010;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,61:142:99:1539,0,2027
chr2	10566804	rs2270307	A	G	3047.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=152;ExcessHet=3.9794;FS=3.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=1.67;SOR=0.924;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,63:152:99:1523,0,2174
chr2	10567082	rs1042953	A	G	321.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=4.7712;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=1.65;SOR=1.981;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:51:111,0,51
chr2	10580967	rs1049500	G	A	700.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-01;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=1.19;SOR=0.734;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,29:53:99:0|1:10580967_G_A:709,0,635:10580967
chr2	10584022	rs3752661	T	C	736.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DB;DP=53;ExcessHet=3.0103;FS=1.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-5.630e-01;SOR=0.929;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:745,0,816
chr2	10585311	rs2302614	A	C	257.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.047;SOR=0.368;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:266,0,243
chr2	10595534	rs6721235	T	C	1692.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753e+00;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=0.270;SOR=0.710;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,66:111:99:1701,0,1327
chr2	10717714	rs12473957	G	C	1684.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=70;ExcessHet=3.9794;FS=0.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.236e+00;SOR=0.575;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,33:70:99:802,0,972
chr2	10718007	rs7570118	G	T	314.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=1.83;SOR=0.804;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:65:65,0,147
chr2	10729032	rs6714787	C	T	230.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.992;SOR=0.250;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:98:98,0,296
chr2	10729554	rs759402	A	T	622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=15;ExcessHet=6.9897;FS=9.419;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.916;SOR=2.303;VQSLOD=17.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:124,0,381
chr2	10729897	rs759403	C	T	2413.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-1.195e+00;SOR=0.742;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:461,0,364
chr2	10741141	rs10181806	A	G	272.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=1.11;SOR=1.112;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,143
chr2	10743153	rs2287061	C	T	940.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158e+00;DB;DP=25;ExcessHet=6.9897;FS=1.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.178;SOR=0.892;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:248,0,489
chr2	10743191	rs2287062	G	A	1149.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DB;DP=32;ExcessHet=6.9897;FS=2.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.230;SOR=0.913;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:371,0,506
chr2	10747207	rs6759714	A	G	337.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=0.431;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:112,0,133
chr2	10747246	rs6744854	C	G	367.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=1.07;SOR=1.244;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:10747246_C_G:69,0,272:10747246
chr2	10747271	rs6759740	A	G	675.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=11;ExcessHet=6.9897;FS=5.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.172;SOR=2.494;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,3:11:99:0|1:10747246_C_G:99,0,375:10747246
chr2	10762302	rs70953325	TA	T	7611.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=1.288;VQSLOD=5.88;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2401,196,0
chr2	10808776	rs55925118	C	CAA	4128.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.69;SOR=1.179;VQSLOD=3.63;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,22:22:66:990,66,0
chr2	10813782	rs6748766	T	C	2748.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.809;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:684,71,0
chr2	10908560	rs1198848	G	A	181.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	10908662	rs12468989	G	A	374.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.062;SOR=0.519;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:22:185,0,22
chr2	10908893	rs1198849	A	G	2167.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=59;ExcessHet=6.9897;FS=1.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-4.980e-01;SOR=0.811;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,23:59:99:516,0,866
chr2	10909092	rs66538971	C	T	175.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=1.28;SOR=1.085;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:24:78,0,24
chr2	10911891	rs1198850	T	C	6206.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=1.815;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1454,126,0
chr2	10912153	rs2171773	T	G	1683.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.06;DB;DP=49;ExcessHet=3.9794;FS=1.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=1.82;SOR=0.469;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,30:49:99:1068,0,556
chr2	10912719	rs72777388	G	A	1142.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=67;ExcessHet=3.9794;FS=2.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=2.41;SOR=0.963;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,25:67:99:597,0,1117
chr2	10914867	rs56195743	A	T	477.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=13;ExcessHet=3.9794;FS=3.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=-5.250e-01;SOR=0.144;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:303,0,159
chr2	10915020	rs2969881	A	G	2420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914e+00;DB;DP=54;ExcessHet=6.9897;FS=1.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-7.300e-02;SOR=0.603;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:687,0,726
chr2	10917555	rs72777393	C	T	431.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DB;DP=19;ExcessHet=3.9794;FS=14.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=1.67;SOR=3.711;VQSLOD=11.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:182,0,354
chr2	10922516	rs1686482	A	C	3367.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.24;DB;DP=56;ExcessHet=3.9794;FS=0.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=-3.040e-01;SOR=0.819;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:710,0,856
chr2	10924524	rs1198873	T	C	1535.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.599e+00;DB;DP=21;ExcessHet=3.0103;FS=4.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=-7.470e-01;SOR=1.954;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,14:21:99:311,0,160
chr2	10928610	rs1734434	T	C	1076.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.65;ReadPosRankSum=-1.981e+00;SOR=0.735;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:63:63,0,193
chr2	10928694	rs11409434	G	GAA	1661.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=25;ExcessHet=3.9794;FS=6.229;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=-9.040e-01;SOR=1.640;VQSLOD=6.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:25:99:351,0,320
chr2	10928777	rs2952626	A	C	6875.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=62;ExcessHet=3.0103;FS=9.282;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.77;ReadPosRankSum=2.47;SOR=1.284;VQSLOD=4.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,30:62:99:831,0,727
chr2	10928906	rs1734432	T	C	7269.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=71;ExcessHet=3.0103;FS=9.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.31;ReadPosRankSum=1.90;SOR=1.436;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,33:71:99:886,0,975
chr2	10928962	rs1734431	A	G	6358.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=67;ExcessHet=3.0103;FS=1.507;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.14;ReadPosRankSum=-4.020e+00;SOR=0.882;VQSLOD=21.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:34,33:67:99:895,0,841
chr2	10929133	rs1734430	A	G	2225.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=28;ExcessHet=3.0103;FS=8.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=-2.686e+00;SOR=1.897;VQSLOD=18.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,10:28:99:296,0,487
chr2	10929867	rs11904084	T	C	5101.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-01;DB;DP=73;ExcessHet=3.0103;FS=0.671;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=0.053;SOR=0.624;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,38:73:99:868,0,844
chr2	10930050	rs1686514	A	T	1350.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.220e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=-1.338e+00;SOR=0.919;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:149,0,259
chr2	10930106	rs200934850	ATTT	A	396.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.86;ReadPosRankSum=0.00;SOR=3.442;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:21:80,0,21
chr2	10931001	rs1614107	A	G	611.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=0.319;SOR=1.112;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:50:50,0,240
chr2	10932082	rs1734421	T	C	5553.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DB;DP=57;ExcessHet=3.0103;FS=1.012;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=-1.014e+00;SOR=1.022;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,28:57:99:823,0,862
chr2	10932207	rs1734422	C	A	693.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.54;ReadPosRankSum=0.126;SOR=1.893;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:70:70,0,100
chr2	10933249	rs4799	C	T	5881.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DB;DP=68;ExcessHet=3.0103;FS=0.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=-3.990e-01;SOR=0.811;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,40:68:99:980,0,672
chr2	10933421	rs1686517	G	A	1251.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.77;ReadPosRankSum=0.355;SOR=3.026;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:180,0,205
chr2	10937037	rs1734343	T	G	2070.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=18;ExcessHet=3.0103;FS=2.366;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.36;ReadPosRankSum=1.05;SOR=0.319;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:297,0,302
chr2	10937095	rs56147885	T	A	1709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DB;DP=53;ExcessHet=3.9794;FS=2.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-1.880e-01;SOR=0.437;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:685,0,562
chr2	10937409	rs1686444	C	T	1971.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588e+00;DB;DP=14;ExcessHet=3.0103;FS=2.373;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.33;ReadPosRankSum=-8.820e-01;SOR=0.355;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:193,0,312
chr2	10937687	rs1734346	G	A	739.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=-9.670e-01;SOR=4.712;VQSLOD=13.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:66,0,36
chr2	10937980	rs17365181	T	C	921.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=30;ExcessHet=3.9794;FS=1.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.021;SOR=0.902;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:556,0,268
chr2	10938043	rs56346617	T	G	1233.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.740e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.27;ReadPosRankSum=0.150;SOR=1.662;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:298,0,129
chr2	10942520	rs2306922	C	T	56.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.08;ReadPosRankSum=-1.309e+00;SOR=0.223;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:64:64,0,164
chr2	10942567	rs1686434	G	A	1211.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=16;ExcessHet=3.0103;FS=2.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=-1.080e-01;SOR=0.276;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:161,0,318
chr2	10942687	rs4758	C	T	5005.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.890e-01;DB;DP=58;ExcessHet=3.0103;FS=4.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=-1.162e+00;SOR=1.174;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,25:58:99:610,0,896
chr2	10950111	rs56155717	ATGAC	A	4117.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-02;DB;DP=46;ExcessHet=3.0103;FS=9.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=0.634;SOR=1.901;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,20:46:99:0|1:10950111_ATGAC_A:871,0,2161:10950111
chr2	10950136	rs1734448	T	C	4615.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.690e-01;DB;DP=56;ExcessHet=3.0103;FS=1.955;MQ=60.00;MQRankSum=0.00;QD=32.05;ReadPosRankSum=0.295;SOR=1.067;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,27:56:99:0|1:10950111_ATGAC_A:933,0,2250:10950111
chr2	10950284	rs1734449	G	C	6827.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=76;ExcessHet=3.0103;FS=0.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=-2.488e+00;SOR=0.633;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,28:76:99:692,0,1279
chr2	10950665	rs1489613	T	C	726.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.04;ReadPosRankSum=-1.383e+00;SOR=4.804;VQSLOD=13.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:24:142,0,24
chr2	10952790	rs6726687	T	C	15906.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;DB;DP=156;ExcessHet=3.0103;FS=2.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=-3.690e-01;SOR=0.737;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,77:156:99:1910,0,1886
chr2	10953001	rs6736810	G	T	1856.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DB;DP=11;ExcessHet=3.0103;FS=7.334;MQ=60.00;MQRankSum=0.00;QD=32.55;ReadPosRankSum=-1.750e-01;SOR=4.493;VQSLOD=11.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:212,0,137
chr2	10959242	rs57873459	TC	T	196.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:31:72,0,31
chr2	10959292	rs56321198	C	A	535.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=11;ExcessHet=3.9794;FS=6.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=0.702;SOR=2.833;VQSLOD=17.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:218,0,134
chr2	10959384	rs55770944	A	G	1500.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=52;ExcessHet=3.9794;FS=1.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.618;SOR=0.861;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:579,0,672
chr2	10959407	rs72779451	A	C	1527.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=56;ExcessHet=3.9794;FS=2.340;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.591;SOR=0.966;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:595,0,756
chr2	10959461	rs72779452	G	T	1417.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=59;ExcessHet=3.9794;FS=1.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=1.32;SOR=0.843;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,18:59:99:457,0,989
chr2	10959475	rs72779453	G	C	1497.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.11;DB;DP=56;ExcessHet=3.9794;FS=4.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.566;SOR=1.132;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,17:56:99:493,0,916
chr2	10960866	rs56121730	C	T	1509.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=68;ExcessHet=3.9794;FS=2.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-2.340e-01;SOR=0.979;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,32:68:99:902,0,806
chr2	10960952	rs56025654	G	A	2640.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=111;ExcessHet=3.9794;FS=2.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.680;SOR=0.856;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,61:111:99:1480,0,1303
chr2	10961297	rs7571007	C	T	335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592e+00;DB;DP=11;ExcessHet=3.9794;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-6.030e-01;SOR=1.112;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:99:235,0,100
chr2	10994418	rs1198852	T	C	2349.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=3.575;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:869,69,0
chr2	10994937	rs1198851	C	T	858.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=26;ExcessHet=3.9794;FS=7.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=-5.930e-01;SOR=0.461;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:296,0,478
chr2	11053020	rs3732104	A	G	22846.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577e+00;DB;DP=330;ExcessHet=3.0103;FS=0.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=-8.290e-01;SOR=0.670;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:161,169:330:99:4342,0,4215
chr2	11264594	rs368767726	C	CACCCCTGCCAGG	907.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.87;ReadPosRankSum=1.65;SOR=1.127;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:99:120,0,210
chr2	11264830	rs7560331	G	A	5483.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314e+00;DB;DP=100;ExcessHet=3.9794;FS=0.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=-1.357e+00;SOR=0.633;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,44:100:99:1038,0,1466
chr2	11273407	.	GTC	G	1343.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e-02;DP=94;ExcessHet=6.9897;FS=1.765;MQ=59.98;MQRankSum=0.00;QD=5.27;ReadPosRankSum=-1.258e+00;SOR=0.548;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:77,17:94:99:311,0,2485
chr2	11273813	rs6751137	T	C	296.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=6;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=0.385;SOR=0.223;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:67:67,0,97
chr2	11280500	.	TAAA	T,TAA	854.28	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.093e+00;DP=17;ExcessHet=3.0103;FS=2.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=0.570;SOR=0.357;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,9:17:71:310,184,262,114,0,71
chr2	11295226	rs148805827	C	CG	704.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.00;SOR=6.273;VQSLOD=5.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:196,18,0
chr2	11295867	rs7598570	G	C	9748.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=1.230;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2459,252,0
chr2	11296046	rs908274	T	C	1215.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=3.841;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:357,27,0
chr2	11300732	rs2271622	C	T	12771.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=0.4576;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=30.27;SOR=0.845;VQSLOD=4.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,198:198:99:5746,589,0
chr2	11300869	rs6432182	T	C	12762.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=1.758;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3741,363,0
chr2	11300927	.	TAAAA	T,TA	3123.16	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.420e-01;DP=29;ExcessHet=3.0103;FS=12.786;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.70;ReadPosRankSum=0.718;SOR=2.592;VQSLOD=2.12;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,9,6:29:99:755,167,156,260,0,201
chr2	11304172	rs33985535	C	T	1272.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.83;SOR=6.932;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr2	11312181	rs12987956	G	A	4926.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=50;ExcessHet=3.0103;FS=4.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=0.428;SOR=1.236;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1724,150,0
chr2	11312224	rs3732103	C	T	2769.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.19;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.12;ReadPosRankSum=0.263;SOR=1.350;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:888,69,0
chr2	11323276	rs978906	T	C	486.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.360e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.17;ReadPosRankSum=-1.213e+00;SOR=1.508;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	11339009	rs34674935	C	CT	408.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.39;MQRankSum=-3.190e-01;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=-3.610e-01;SOR=2.303;VQSLOD=0.290;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:12:68:105,0,68
chr2	11348364	rs141148984	C	CTAACT	3374.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=21;ExcessHet=3.0103;FS=1.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=0.803;SOR=1.201;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,21:21:72:1030,72,0
chr2	11348609	rs5829297	CAAAT	C	2613.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.115;DB;DP=20;ExcessHet=3.0103;FS=2.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.27;ReadPosRankSum=0.840;SOR=1.264;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,20:20:61:901,61,0
chr2	11356190	rs726843	G	A	1955.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.60;DB;DP=17;ExcessHet=3.0103;FS=2.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=0.399;SOR=0.404;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:566,51,0
chr2	11356966	rs4669699	T	C	226.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.40;SOR=1.609;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:124,12,0
chr2	11357100	rs57554471	G	A	685.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.92;POSITIVE_TRAIN_SITE;QD=34.27;SOR=2.093;VQSLOD=4.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr2	11359031	rs9808228	G	T	3446.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.52;SOR=2.215;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:931,87,0
chr2	11359120	rs2230774	G	T	4960.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.967e+00;DB;DP=50;ExcessHet=3.0103;FS=2.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=1.10;SOR=0.479;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1561,150,0
chr2	11359399	rs7600696	A	C	703.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.97;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=0.179;SOR=1.201;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:11359393_G_T:315,21,0:11359393
chr2	11359424	rs55995833	G	C	417.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:11359393_G_T:225,15,0:11359393
chr2	11364756	rs2056103	T	A	390.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.776e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=0.269;SOR=1.179;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	11680403	rs35417544	C	T	178.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=-9.670e-01;SOR=2.303;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	11680896	rs34137466	CAA	C	1300.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.880e-01;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.36;ReadPosRankSum=-6.580e-01;SOR=0.679;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,22:22:66:970,66,0
chr2	11702581	rs142037892	G	C	626.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DB;DP=67;ExcessHet=3.0103;FS=4.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=1.16;SOR=0.731;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,27:67:99:635,0,963
chr2	11702661	rs10929757	A	C	2695.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=49;ExcessHet=6.9897;FS=0.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=1.60;SOR=0.639;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,30:49:99:814,0,426
chr2	11718591	rs1529868	C	T	7158.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.461e+00;DB;DP=84;ExcessHet=3.9794;FS=11.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=-1.171e+00;SOR=0.242;VQSLOD=17.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,41:84:99:1117,0,1351
chr2	11725049	rs12468019	T	C	172.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=5;ExcessHet=6.9897;FS=3.349;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=-1.645e+00;SOR=0.117;VQSLOD=5.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,105
chr2	11725179	rs55893544	G	GA	1060.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DB;DP=59;ExcessHet=3.9794;FS=4.808;MQ=60.00;MQRankSum=0.00;QD=7.91;ReadPosRankSum=2.78;SOR=1.141;VQSLOD=4.09;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:35,24:59:99:476,0,794
chr2	11725241	rs12470971	G	A	2540.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;DB;DP=122;ExcessHet=3.9794;FS=2.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-6.470e-01;SOR=0.874;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,54:122:99:1306,0,1647
chr2	11727507	rs13394619	G	A	6757.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015e+00;DB;DP=208;ExcessHet=6.9897;FS=1.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=0.111;SOR=0.618;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,99:208:99:2256,0,2735
chr2	11731774	rs2358040	T	G	609.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.144;SOR=0.876;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:301,0,207
chr2	11733488	rs57439315	G	T	409.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.479;DB;DP=14;ExcessHet=6.9897;FS=1.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=1.08;SOR=0.277;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:179,0,284
chr2	11733545	rs10693974	A	AACTC	304.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=7;ExcessHet=6.9897;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=1.01;SOR=3.056;VQSLOD=5.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,210
chr2	11736037	rs11679686	A	G	1185.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=17;ExcessHet=6.9897;FS=6.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.317;SOR=2.683;VQSLOD=19.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:305,0,277
chr2	11738091	rs1435547	T	C	14281.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=0.848;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,158:158:99:4753,474,0
chr2	11738765	rs1865575	C	T	2065.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=4.294;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:702,60,0
chr2	11741157	rs16857679	A	G	404.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-1.149e+00;SOR=1.051;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:413,0,359
chr2	11741193	rs11681838	C	A	2048.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=5.058;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:533,42,0
chr2	11751166	rs55890755	C	T	363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-01;DB;DP=39;ExcessHet=3.0103;FS=1.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=0.328;SOR=0.473;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:372,0,616
chr2	11752635	rs2304399	T	C	5813.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=0.938;VQSLOD=19.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1753,171,0
chr2	11752919	rs3816096	G	A	216.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	11754965	rs35762494	C	CT	131.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=1.28;SOR=0.399;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:47:47,0,78
chr2	11755443	rs2252958	T	G	2700.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.494e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=-1.070e+00;SOR=0.924;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:465,0,508
chr2	11757009	rs6735957	A	G	4716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=1.002;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1584,155,0
chr2	11757023	rs892868	C	T	3298.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.270e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=0.167;SOR=0.727;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,19:46:99:442,0,732
chr2	11757076	rs3792038	G	C	2805.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.64;ReadPosRankSum=0.613;SOR=0.867;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,8:24:99:0|1:11757076_G_C:288,0,627:11757076
chr2	11757086	rs3792037	G	A	2761.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=0.735;SOR=0.604;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,8:24:99:0|1:11757076_G_C:288,0,627:11757076
chr2	11757140	rs34592059	G	A	77.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.44;ReadPosRankSum=-8.910e-01;SOR=0.582;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:86:86,0,295
chr2	11758293	rs199960590	T	C	474.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=58.73;MQRankSum=1.42;QD=24.98;ReadPosRankSum=0.423;SOR=0.656;VQSLOD=-5.434e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,12:19:99:0|1:11758293_T_C:483,0,932:11758293
chr2	11758294	rs148699069	G	C	474.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.589e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=58.73;MQRankSum=1.42;QD=24.98;ReadPosRankSum=0.339;SOR=0.656;VQSLOD=-5.425e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,12:19:99:0|1:11758293_T_C:483,0,932:11758293
chr2	11758325	rs56678270	T	C	906.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.41;MQRankSum=1.21;QD=22.66;ReadPosRankSum=0.041;SOR=0.515;VQSLOD=-4.225e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,23:40:99:0|1:11758293_T_C:915,0,1559:11758293
chr2	11758326	rs61341568	G	C	906.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.41;MQRankSum=1.21;QD=22.66;ReadPosRankSum=0.082;SOR=0.515;VQSLOD=-4.190e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,23:40:99:0|1:11758293_T_C:915,0,1559:11758293
chr2	11761309	rs2304401	T	C	4025.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=3.420;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1317,99,0
chr2	11761340	rs3214638	GCTGA	G	1016.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-01;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=0.154;SOR=0.566;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,11:22:99:429,0,429
chr2	11761422	rs12990183	C	G	294.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=4;ExcessHet=3.9794;FS=5.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=0.674;SOR=3.611;VQSLOD=15.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:73,0,74
chr2	11767382	rs11674837	T	G	95.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=1.47;SOR=0.368;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,183
chr2	11773410	rs111854918	C	T	220.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=5;ExcessHet=3.9794;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:59:101,0,59
chr2	11774324	rs2304402	G	A	5512.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=259;ExcessHet=3.9794;FS=1.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=0.430;SOR=0.846;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,116:259:99:2811,0,3497
chr2	11777690	rs3749065	A	T	400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.189;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,108
chr2	11778184	rs33962728	G	A	1368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217e+00;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-8.000e-02;SOR=0.547;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:749,0,1003
chr2	11809513	rs4578832	G	A	853.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=0.973;SOR=0.527;VQSLOD=5.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:605,48,0
chr2	11810095	rs6432225	G	A	16910.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=1.013;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5537,498,0
chr2	11817812	rs4669769	G	C	8914.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.180e-01;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=0.276;SOR=0.720;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3489,348,0
chr2	11853774	rs12465629	T	C	349.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=17;ExcessHet=3.9794;FS=2.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.951;SOR=1.609;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:146,0,354
chr2	11853913	rs4614906	G	A	2721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DB;DP=93;ExcessHet=3.9794;FS=1.917;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-1.050e-01;SOR=0.854;VQSLOD=6.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,61:93:99:1539,0,730
chr2	11853964	rs4640359	G	A	2711.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DB;DP=98;ExcessHet=3.9794;FS=5.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.591;SOR=0.729;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,59:98:99:1434,0,951
chr2	11853988	rs12465630	A	T	2201.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=94;ExcessHet=3.9794;FS=3.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-2.920e-01;SOR=0.929;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,39:94:99:972,0,1380
chr2	11854099	rs4668739	T	C	710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220e-01;DB;DP=27;ExcessHet=3.9794;FS=2.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.073;SOR=0.275;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:342,0,429
chr2	11905636	rs3214670	GT	G	4119.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=75;ExcessHet=3.9794;FS=5.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.327;SOR=1.079;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,38:75:99:912,0,864
chr2	11907842	rs45509591	C	T	1546.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;DB;DP=59;ExcessHet=3.9794;FS=0.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.871;SOR=0.588;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,23:59:99:668,0,1045
chr2	11911761	rs11538448	C	T	599.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=27;ExcessHet=3.9794;FS=2.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.296;SOR=0.346;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:320,0,375
chr2	11920024	rs141990638	TGA	T	122.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=2.833;VQSLOD=5.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	11924950	rs3795974	T	C	4218.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=70;ExcessHet=3.0103;FS=1.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=0.136;SOR=0.558;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,32:70:99:782,0,910
chr2	11932173	rs7561070	G	T	2035.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=-1.609e+00;SOR=0.616;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:443,0,400
chr2	11935322	rs78580932	G	C	317.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=-2.280e-01;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:326,0,207
chr2	11936798	rs2577264	A	G	3364.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.99;ReadPosRankSum=0.893;SOR=1.197;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:513,0,322
chr2	11944746	rs111652164	TG	T	919.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=34;ExcessHet=3.9794;FS=1.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-5.410e-01;SOR=0.958;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,12:34:99:290,0,612
chr2	11959905	rs2716609	T	C	559.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=10;ExcessHet=3.9794;FS=3.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=0.038;SOR=0.105;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:147,0,181
chr2	12164189	rs4668745	C	T	1622.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.150e-01;DB;DP=36;ExcessHet=1.5490;FS=2.155;MQ=60.00;MQRankSum=0.00;QD=22.86;ReadPosRankSum=-4.670e-01;SOR=0.994;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1284,108,0
chr2	12164246	rs4669797	C	T	954.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=0.892;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:92:971,92,0
chr2	12864766	rs2288192	C	T	2987.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=93;ExcessHet=3.9794;FS=2.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.276;SOR=0.510;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,43:93:99:1181,0,1241
chr2	12865048	rs2288191	A	T	305.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-4.000e-03;SOR=0.330;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:174,0,291
chr2	12877204	rs13016655	C	T	306.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=0.414;SOR=0.275;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	12877307	rs13016883	C	G	1257.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=16;ExcessHet=6.9897;FS=1.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.467;SOR=0.940;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:346,0,174
chr2	12877501	rs5829384	G	GA	8066.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=106;ExcessHet=3.9794;FS=11.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=-9.200e-02;SOR=1.189;VQSLOD=3.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1814,0,1861
chr2	12880331	rs141122325	C	T	113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.163;SOR=0.269;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:122,0,307
chr2	13530877	rs2632175	G	A	85.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=58.97;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=-2.100e+00;SOR=0.283;VQSLOD=-1.292e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:94:94,0,237
chr2	13554931	rs73916272	A	G	226.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DB;DP=11;ExcessHet=3.0103;FS=2.398;MQ=58.33;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=1.30;SOR=1.609;VQSLOD=-3.071e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:235,0,130
chr2	15318461	rs6714001	G	C	113.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:19:122,0,19
chr2	15319070	rs5829492	TA	T	811.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.82;ReadPosRankSum=0.289;SOR=0.813;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,25:48:99:523,0,467
chr2	15378822	rs111370598	G	GAATT	1598.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=7.223;VQSLOD=6.26;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:495,33,0
chr2	15470848	rs34395824	C	T	3236.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115e+00;DB;DP=51;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=-3.610e-01;SOR=0.689;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:757,0,574
chr2	15471002	rs6759219	C	A	1280.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=3.737;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:477,42,0
chr2	15491994	.	GCACACACACACA	G,GCA	5470.82	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=2.816;VQSLOD=5.67;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,3,25:28:13:1149,826,844,96,0,13
chr2	15493881	rs2277915	A	G	4970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=2.093;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1528,147,0
chr2	15514982	rs2049720	T	C	346.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=4.615;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr2	15515058	rs2049719	A	G	66.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=2.303;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr2	15519924	rs116210837	C	T	661.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=50;ExcessHet=3.0103;FS=6.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-1.048e+00;SOR=0.187;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:670,0,695
chr2	15519992	rs2058866	G	T	3310.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=2.646;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:767,71,0
chr2	15520153	rs2058867	T	C	473.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.98;SOR=5.136;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr2	15523266	rs6756934	A	T	2134.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.23;SOR=4.693;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:545,45,0
chr2	15523307	rs3834149	TA	T	2780.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=2.380;VQSLOD=6.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,26:26:78:781,78,0
chr2	15523549	rs3755129	T	C	846.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.37;SOR=2.925;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:173,18,0
chr2	15533689	rs2380650	T	C	3090.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.42;SOR=3.611;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:832,72,0
chr2	15533734	rs139494535	G	GAAATGAAAGCGTATGTCTACAC	7106.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.40;SOR=2.129;VQSLOD=4.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:99:2112,140,0
chr2	15533779	rs9710889	G	A	7269.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.61;SOR=0.987;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2030,209,0
chr2	15533884	rs9710962	C	A	6009.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=2.059;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:15533884_C_A:1705,117,0:15533884
chr2	15533895	rs13417550	A	G	5471.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.72;SOR=2.554;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:15533884_C_A:1465,99,0:15533884
chr2	15533899	rs11689153	A	G	5120.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.76;SOR=3.035;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:99:1|1:15533884_C_A:1465,99,0:15533884
chr2	15533998	rs11678132	C	T	1444.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.71;SOR=4.804;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:295,21,0
chr2	15534642	rs3792578	G	A	528.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=5.283;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	15536314	rs7590198	C	T	624.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=5.670;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	15542159	rs6733647	A	G	1691.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=5.994;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:538,39,0
chr2	15557535	rs1528622	A	T	441.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=4.977;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	15564718	rs10929367	T	C	1431.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.27;SOR=4.351;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:312,24,0
chr2	15564799	rs6748427	T	C	379.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=4.804;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	15567649	rs3796002	T	C	1457.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=27.69;SOR=3.258;VQSLOD=5.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:304,24,0
chr2	15601287	rs11411624	A	AT	3076.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.79;POSITIVE_TRAIN_SITE;QD=30.22;SOR=2.484;VQSLOD=5.35;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:15601287_A_AT:838,63,0:15601287
chr2	15601441	rs7590340	C	T	4628.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=1.132;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1638,165,0
chr2	15601574	rs7590458	C	T	1238.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.38;SOR=4.615;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:466,33,0
chr2	15607842	rs4668909	T	C	7273.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=0.800;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2071,198,0
chr2	15608013	rs4668910	C	A	2070.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=4.654;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:411,33,0
chr2	15613678	rs11898971	T	C	2073.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=3.422;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:565,54,0
chr2	15613715	rs11893303	G	A	1206.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=3.193;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:344,36,0
chr2	15614404	rs13014906	T	C	6227.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.10;SOR=1.479;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1954,180,0
chr2	15615704	rs35237017	T	C	712.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=5.892;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:277,21,0
chr2	15615910	rs1990754	A	G	5798.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=0.736;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1467,144,0
chr2	15616013	rs1990755	C	G	3821.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=2.113;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:841,87,0
chr2	15616030	rs1990756	C	T	3266.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=2.632;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:766,75,0
chr2	15618339	rs1125534	G	A	3301.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=1.702;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:865,81,0
chr2	15623608	rs10201564	C	G	2750.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=4.774;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1076,84,0
chr2	15644107	rs3732002	C	A	3919.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.10;SOR=5.622;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:15644107_C_A:1035,69,0:15644107
chr2	15644111	rs3732003	C	T	3984.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.355;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=1.52;SOR=3.981;VQSLOD=14.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:15644107_C_A:1073,72,0:15644107
chr2	15644401	rs2287265	C	T	4880.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.697e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=0.714;SOR=2.211;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1212,96,0
chr2	15674686	rs13029846	T	C	9772.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.007e+00;DB;DP=84;ExcessHet=3.0103;FS=3.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.73;ReadPosRankSum=0.495;SOR=0.253;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,83:84:99:2449,211,0
chr2	15676686	rs10208972	G	A	4001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=2.554;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1439,132,0
chr2	15678250	rs7606850	T	C	144.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.15;SOR=3.258;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	15678368	rs7595512	C	T	2234.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.86;ReadPosRankSum=-8.170e-01;SOR=1.387;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:798,66,0
chr2	15678482	rs2380657	T	C	4434.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.333e+00;DB;DP=41;ExcessHet=3.0103;FS=3.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.90;ReadPosRankSum=1.12;SOR=0.458;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1356,123,0
chr2	15678501	rs66736557	GA	G	3792.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.020e-01;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.40;ReadPosRankSum=0.544;SOR=0.223;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1172,117,0
chr2	15679609	rs2058868	A	T	866.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.91;SOR=4.892;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	15691886	rs7572131	G	A	2743.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=6.214;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:775,57,0
chr2	15693987	rs140552835	CCTCTCTCCCTCT	C	168.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.93;SOR=1.609;VQSLOD=4.70;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	15694164	rs34789730	T	TA	4420.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.84;SOR=1.885;VQSLOD=5.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1048,78,0
chr2	15731859	rs10153729	A	C	827.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.12;ReadPosRankSum=0.489;SOR=1.688;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:330,24,0
chr2	15731998	rs10221770	A	G	5092.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.940e-01;DB;DP=74;ExcessHet=3.9794;FS=0.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-7.400e-01;SOR=0.633;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2211,222,0
chr2	15735419	rs2302928	G	A	1866.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DB;DP=29;ExcessHet=3.9794;FS=1.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=0.236;SOR=0.458;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,20:29:99:689,0,283
chr2	15735648	rs2302929	T	C	1591.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=61;ExcessHet=3.9794;FS=2.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.010;SOR=0.884;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:689,0,834
chr2	15736697	rs2032778	G	A	1609.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519e+00;DB;DP=49;ExcessHet=3.9794;FS=1.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.762;SOR=0.973;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,26:49:99:736,0,696
chr2	15737698	rs2302932	G	A	593.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=-5.890e-01;SOR=0.765;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:147,0,100
chr2	15744484	rs35195784	CT	C	814.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=1.73;SOR=0.496;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,12:23:99:344,0,300
chr2	15744984	rs79808866	T	G	206.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.00;SOR=1.085;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:108,0,65
chr2	15746220	rs41264195	C	T	2275.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=86;ExcessHet=3.9794;FS=4.248;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=1.06;SOR=0.995;VQSLOD=6.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,38:86:99:972,0,1157
chr2	15747393	rs10929378	C	T	4003.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=87;ExcessHet=3.9794;FS=1.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=0.981;SOR=0.600;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2500,260,0
chr2	15753279	rs2302934	C	G	544.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=1.98;SOR=1.022;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:97:116,0,97
chr2	15753696	rs7573242	T	C	141.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:75,0,70
chr2	15757226	rs11305723	CT	C	242.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=1.01;SOR=2.147;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:168,18,0
chr2	15768876	rs11900266	G	A	2339.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.420e-01;DB;DP=101;ExcessHet=3.9794;FS=2.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-5.830e-01;SOR=0.895;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,40:101:99:855,0,1504
chr2	15769607	rs807635	C	T	266.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.511;SOR=0.346;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:139,0,223
chr2	15770450	rs2161072	A	C	285.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=1.61;SOR=0.941;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:87:87,0,188
chr2	15840505	rs4668460	C	A	3431.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=63;ExcessHet=3.0103;FS=0.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=0.473;SOR=0.549;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,39:63:99:907,0,622
chr2	15840522	rs4668461	G	T	3685.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.155e+00;DB;DP=62;ExcessHet=3.0103;FS=3.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=0.611;SOR=0.448;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:852,0,711
chr2	15840645	rs4668962	T	C	2735.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=-6.890e-01;SOR=0.799;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:484,0,554
chr2	15841230	rs1421610	T	A	852.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.71;SOR=6.358;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	15841288	rs1421609	G	A	2304.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.93;ReadPosRankSum=0.108;SOR=1.501;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:329,0,175
chr2	15841804	rs6431726	A	G	34.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=1.609;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
chr2	16743453	rs6751062	A	C	3564.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.284e+00;DB;DP=51;ExcessHet=3.9794;FS=10.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=1.62;SOR=0.252;VQSLOD=18.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:742,0,668
chr2	17691950	rs10717850	CA	C	523.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.53;SOR=5.994;VQSLOD=5.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr2	17696573	rs834514	C	T	16431.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=1.022;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4888,452,0
chr2	17698678	rs665312	A	G	8674.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.35;SOR=1.221;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2357,206,0
chr2	17773524	rs2680827	G	A	3229.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=2.141;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:727,69,0
chr2	17836722	rs67873515	T	TCA	559.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.79;QD=27.96;SOR=2.636;VQSLOD=4.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:143,18,0
chr2	17846592	rs2710674	A	T	650.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=0.00;SOR=2.030;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:237,0,201
chr2	17895975	rs2344691	C	T	210.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=1.72;SOR=1.085;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:104,0,142
chr2	17913266	rs2052746	A	C	5306.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=3.226;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1698,137,0
chr2	17923133	rs41282365	T	A	99.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-3.280e-01;SOR=0.495;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:108,0,144
chr2	17941423	rs2555072	T	G	2612.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.309;DB;DP=24;ExcessHet=3.0103;FS=4.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.48;ReadPosRankSum=-3.890e-01;SOR=0.172;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:909,72,0
chr2	17942775	rs1812152	T	A	6495.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.755;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=0.326;SOR=0.656;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2762,290,0
chr2	17943015	rs2615047	T	C	296.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=4.174;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr2	17954027	rs300175	G	A	6911.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=1.227;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1863,176,0
chr2	17954140	rs300176	A	G	2899.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=22;ExcessHet=3.0103;FS=2.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.90;ReadPosRankSum=0.389;SOR=1.252;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:801,66,0
chr2	17954421	rs300177	C	G	5905.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.741e+00;DB;DP=65;ExcessHet=3.0103;FS=0.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.25;ReadPosRankSum=-3.500e-01;SOR=0.819;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2150,194,0
chr2	17954647	rs300178	T	G	821.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=-1.803e+00;SOR=0.527;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:301,24,0
chr2	17959099	rs2615049	T	G	353.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.42;ReadPosRankSum=0.598;SOR=1.981;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	17959420	rs10535305	TAC	T	1689.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.12;SOR=0.785;VQSLOD=4.21;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:17959420_TAC_T:979,69,0:17959420
chr2	17959441	rs10535306	GTA	G	240.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795e+00;DB;DP=18;ExcessHet=3.0103;FS=7.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-6.670e-01;SOR=0.044;VQSLOD=5.51;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,8:18:99:0|1:17959420_TAC_T:249,0,353:17959420
chr2	17959443	rs71402623	A	*,G	1071.78	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.345e+00;DB;DP=18;ExcessHet=1.5490;FS=2.411;MQ=60.00;MQRankSum=0.00;QD=24.93;ReadPosRankSum=-2.710e+00;SOR=0.204;VQSLOD=20.71;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:0,8,10:18:99:786,395,353,295,0,249
chr2	17959464	rs10535307	CAT	C	790.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.763e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=-1.735e+00;SOR=0.749;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:17959420_TAC_T:495,33,0:17959420
chr2	17962450	rs300168	A	G	7399.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.410e-01;DB;DP=81;ExcessHet=3.0103;FS=0.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=-4.270e-01;SOR=0.761;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2690,243,0
chr2	17962518	rs300169	C	T	9782.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.188e+00;DB;DP=100;ExcessHet=3.0103;FS=5.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=-7.760e-01;SOR=0.973;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3206,299,0
chr2	17962993	rs149936944	CAAGTT	C	813.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.090e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=1.17;SOR=0.602;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,21:41:99:822,0,1109
chr2	17998025	rs34069439	A	T	9471.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.598e+00;DB;DP=150;ExcessHet=3.9794;FS=2.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=0.171;SOR=0.809;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,72:150:99:2036,0,2315
chr2	17998095	rs35858730	C	T	9747.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470e+00;DB;DP=158;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=-2.520e-01;SOR=0.647;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,75:158:99:2022,0,2417
chr2	17998331	rs13001625	T	C	13187.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.01;DB;DP=220;ExcessHet=3.9794;FS=1.185;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=-5.740e-01;SOR=0.803;VQSLOD=6.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,97:220:99:2715,0,2955
chr2	18112473	rs4240213	G	A	10565.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.302;DB;DP=118;ExcessHet=3.0103;FS=1.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=0.419;SOR=0.582;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3624,350,0
chr2	18113623	rs4832524	A	G	11955.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.58;DB;DP=153;ExcessHet=3.0103;FS=3.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=-5.400e-01;SOR=1.087;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,153:153:99:5069,459,0
chr2	18113789	rs3747515	G	A	1033.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209e+00;DB;DP=20;ExcessHet=6.9897;FS=2.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.114;SOR=1.311;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:299,0,319
chr2	18757501	rs3902946	G	C	1446.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.821;SOR=0.613;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,31:46:99:851,0,350
chr2	18765728	rs35590292	A	G	594.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=37;ExcessHet=3.0103;FS=1.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=0.747;SOR=1.230;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:603,0,470
chr2	18768850	rs16985306	A	G	3665.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154e+00;DB;DP=103;ExcessHet=3.9794;FS=2.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.498;SOR=0.537;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,57:103:99:1409,0,1260
chr2	18770540	rs6720633	G	C	679.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851e+00;DB;DP=26;ExcessHet=3.9794;FS=1.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.670;SOR=0.422;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:298,0,474
chr2	19552389	rs851066	T	C	993.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=-7.120e-01;SOR=3.126;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:53:53,0,186
chr2	20101363	rs7584726	G	A	249.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.93;ReadPosRankSum=2.29;SOR=1.022;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:57:258,0,57
chr2	20131184	rs1191779	C	A	5402.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=3.198;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1357,117,0
chr2	20131987	rs4294960	T	C	538.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467e+00;DB;DP=31;ExcessHet=3.0103;FS=1.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-2.000e-02;SOR=1.136;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:31:99:547,0,356
chr2	20135283	rs6741091	T	C	1556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=139;ExcessHet=3.0103;FS=2.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-1.460e-01;SOR=0.527;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,66:139:99:1565,0,1732
chr2	20160250	rs12996974	G	C	459.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913e+00;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-1.900e-01;SOR=0.495;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:468,0,556
chr2	20161852	rs10165128	T	G	99.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.86;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:108,0,65
chr2	20169132	rs13005512	T	A	55.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.645e+00;SOR=0.446;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,114
chr2	20169509	rs61079224	AT	A	91.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=6.9897;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=6.13;ReadPosRankSum=1.38;SOR=0.086;VQSLOD=5.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:34:37,0,34
chr2	20173255	rs10153717	A	C	3361.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=2.646;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1135,105,0
chr2	20188765	rs13035048	C	T	138.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-7.020e-01;SOR=0.859;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:147,0,166
chr2	20189089	rs3731663	C	T	4179.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DB;DP=74;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=0.286;SOR=0.766;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,49:74:99:1474,0,657
chr2	20192696	rs7569975	G	A	756.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=0.544;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,23:36:99:765,0,399
chr2	20192931	rs35973216	G	A	995.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.900e-01;DB;DP=86;ExcessHet=3.0103;FS=1.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-1.083e+00;SOR=0.915;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1004,0,1192
chr2	20194036	rs3820949	G	C	941.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.130e-01;DB;DP=56;ExcessHet=3.0103;FS=3.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=-6.040e-01;SOR=1.418;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,34:56:99:950,0,585
chr2	20201952	rs147407955	C	CACACACACACAG	55.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.17;ReadPosRankSum=0.549;SOR=0.551;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,772
chr2	20202811	rs11681705	A	G	371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=-5.260e-01;SOR=0.313;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:380,0,357
chr2	20202929	rs28452699	C	T	1519.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.93;DB;DP=118;ExcessHet=3.0103;FS=6.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-3.750e-01;SOR=1.241;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,55:118:99:1528,0,1559
chr2	20205423	rs5829721	A	AAAAG	442.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.370e-01;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-1.532e+00;SOR=0.412;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,11:26:99:451,0,894
chr2	20205680	rs28401180	C	T	2215.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.487e+00;DB;DP=172;ExcessHet=3.0103;FS=2.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-3.180e-01;SOR=0.924;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,94:172:99:2224,0,2101
chr2	20205848	rs28598872	G	A	1738.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=125;ExcessHet=3.0103;FS=4.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-3.010e-01;SOR=0.526;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,64:125:99:1747,0,1555
chr2	20233135	rs1191824	T	C	1204.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=0.990;SOR=1.112;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:292,0,421
chr2	20234523	rs1147114	C	T	2517.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.003e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=-6.810e-01;SOR=0.732;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:951,84,0
chr2	20234583	.	G	A	381.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.510e-01;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.19;ReadPosRankSum=-9.500e-02;SOR=0.693;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,17:53:99:390,0,1032
chr2	20240668	rs3731673	C	A	4328.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=113;ExcessHet=3.9794;FS=1.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=2.03;SOR=0.571;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,56:113:99:1429,0,1455
chr2	20302490	rs60370058	G	A	1904.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=58.73;QD=32.00;SOR=4.255;VQSLOD=4.78;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:80:1181,80,0
chr2	20320447	rs62112188	C	T	576.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=9;ExcessHet=3.9794;FS=3.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=-9.360e-01;SOR=2.356;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:128,0,174
chr2	20320463	.	CA	C	59.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.58;MQRankSum=0.00;QD=1.79;ReadPosRankSum=-5.070e-01;SOR=0.233;VQSLOD=5.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:50:50,0,407
chr2	20320479	rs200514556	AG	A	189.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=59.56;MQRankSum=0.00;QD=3.33;ReadPosRankSum=0.931;SOR=0.741;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:21:99:151,0,609
chr2	20320493	rs28380549	G	A	1197.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020e-01;DB;DP=25;ExcessHet=3.9794;FS=2.983;MQ=59.46;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=2.55;SOR=1.900;VQSLOD=-8.869e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,8:25:99:532,0,669
chr2	20401858	.	TA	T	756.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DP=17;ExcessHet=3.0103;FS=4.678;MQ=60.00;MQRankSum=0.00;QD=13.27;ReadPosRankSum=0.290;SOR=1.501;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:168,0,132
chr2	20402380	rs1131351	C	G	339.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=0.165;SOR=0.269;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:70:70,0,138
chr2	20403794	rs10205485	A	T	12024.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=0.714;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3424,322,0
chr2	20405004	rs3732166	C	T	795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.520e-01;DB;DP=11;ExcessHet=6.9897;FS=1.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=-5.790e-01;SOR=1.121;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:176,0,129
chr2	20405050	rs6531225	A	C	2917.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=3.412;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:761,63,0
chr2	20423154	rs4666375	A	G	2763.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.27;SOR=2.804;VQSLOD=18.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:944,75,0
chr2	20424062	rs138986173	G	A	1275.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.00;ReadPosRankSum=2.61;SOR=1.270;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:395,0,313
chr2	20454431	rs11686919	A	G	58.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:67,0,32
chr2	20455176	rs111928251	GT	G	732.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.820e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.22;ReadPosRankSum=-8.040e-01;SOR=0.622;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:18:99:131,0,185
chr2	20462852	rs3796066	G	C	489.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=-3.660e-01;SOR=1.863;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:57:57,0,188
chr2	20518141	.	T	C	172.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.260e-01;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.57;ReadPosRankSum=-7.970e-01;SOR=0.859;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:181,0,398
chr2	20525948	rs9306890	T	C	2580.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480e-01;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.81;ReadPosRankSum=-1.285e+00;SOR=0.605;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:533,0,529
chr2	20699625	rs13010768	G	A	217.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=-5.280e-01;SOR=0.859;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:226,0,188
chr2	20699667	rs342089	C	G	2387.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=-1.088e+00;SOR=0.822;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,23:36:99:588,0,329
chr2	20699997	rs13017877	C	T	44.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.820e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.43;ReadPosRankSum=-4.930e-01;SOR=0.976;VQSLOD=22.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:53:53,0,282
chr2	20700786	rs961496	C	T	1899.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=44;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-2.170e-01;SOR=0.775;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,27:44:99:786,0,406
chr2	20700900	rs342088	A	G	7737.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=0.803;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2443,246,0
chr2	20729143	rs56047670	C	CTT,CTTT	1071.20	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.76;SOR=1.949;VQSLOD=4.20;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,7,4:11:65:374,98,65,156,0,126
chr2	20798171	rs146783713	C	T	162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.820e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.38;ReadPosRankSum=-2.050e-01;SOR=0.754;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:171,0,383
chr2	20818193	rs3732154	G	A	1281.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.33;SOR=1.547;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:511,42,0
chr2	20818286	rs3821217	A	C	2491.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.98;SOR=1.745;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:773,72,0
chr2	20818454	rs3732152	T	A	13401.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=29.45;SOR=1.189;VQSLOD=4.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3729,291,0
chr2	20818458	rs3732151	G	A	8560.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112e+00;DB;DP=99;ExcessHet=3.9794;FS=0.453;MQ=59.93;MQRankSum=1.24;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=1.31;SOR=0.654;VQSLOD=2.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,59:99:99:1441,0,1042
chr2	20818517	rs3732150	T	C	3375.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.02;DB;DP=120;ExcessHet=3.9794;FS=2.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=0.612;SOR=0.822;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,54:120:99:1570,0,1388
chr2	20822218	rs4666444	T	C	1728.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=3.258;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:624,54,0
chr2	20823612	rs13030108	A	G	2693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.26;SOR=1.416;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:695,66,0
chr2	20823724	rs6531248	T	C	3471.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=0.888;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1108,102,0
chr2	20823850	rs6733419	T	C	2320.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=1.812;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:20823850_T_C:1047,75,0:20823850
chr2	20823858	rs2305459	C	T	1191.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.240e-01;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.05;ReadPosRankSum=-1.250e-01;SOR=0.951;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:69:1|1:20823850_T_C:973,69,0:20823850
chr2	20824498	rs2305458	C	T	4667.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.470;DB;DP=113;ExcessHet=1.5490;FS=2.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=-7.450e-01;SOR=0.488;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3534,338,0
chr2	20824691	rs17663045	C	T	3027.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.561e+00;DB;DP=69;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-1.940e-01;SOR=0.789;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2163,206,0
chr2	20838560	rs7596314	A	G	1844.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.34;SOR=5.376;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:507,39,0
chr2	20841059	rs4666449	C	T	1669.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.320e+00;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=-2.466e+00;SOR=1.147;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1220,90,0
chr2	20841182	rs1344836	G	A	407.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.025e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=-1.100e+00;SOR=0.793;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr2	20866888	rs70939049	CG	C	61.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.59;SOR=2.303;VQSLOD=4.47;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr2	20870018	rs1865679	T	G	2130.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.14;SOR=7.941;VQSLOD=23.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:694,51,0
chr2	20870031	rs13013895	C	G	448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.91;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.099;SOR=0.874;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:457,0,331
chr2	20870579	rs13013489	G	A	5992.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.094e+00;DB;DP=108;ExcessHet=3.9794;FS=0.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.379;SOR=0.767;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3553,323,0
chr2	20871190	rs4666457	A	C	16338.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=59.96;QD=33.97;SOR=2.973;VQSLOD=2.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5309,487,0
chr2	20871293	rs1564696	A	G	4128.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.84;SOR=7.764;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1052,75,0
chr2	20884546	rs10171934	A	C	5335.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=63;ExcessHet=3.0103;FS=2.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=0.591;SOR=1.013;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1977,189,0
chr2	20884586	rs10182643	G	C	6296.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.810e-01;DB;DP=77;ExcessHet=3.0103;FS=2.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=0.032;SOR=0.941;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2338,230,0
chr2	20939706	rs2046325	T	C	4723.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.180e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=-3.940e-01;SOR=0.732;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,18:46:99:0|1:20939706_T_C:660,0,1745:20939706
chr2	20939708	rs653347	C	T	4723.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.03;ReadPosRankSum=0.083;SOR=0.743;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,18:49:99:0|1:20939706_T_C:660,0,1745:20939706
chr2	21224423	rs142151703	G	A	99.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.26;MQRankSum=-3.190e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=-1.000e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:26:108,0,26
chr2	21225281	rs1042034	C	T	10890.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.416e+00;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=0.110;SOR=0.700;VQSLOD=7.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4652,421,0
chr2	21225753	rs1042031	C	T	2416.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293e+00;DB;DP=90;ExcessHet=3.9794;FS=1.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.323;SOR=0.826;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,47:90:99:1257,0,1204
chr2	21227383	rs1800479	C	G	2075.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=70;ExcessHet=3.9794;FS=2.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.796;SOR=0.890;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,29:70:99:735,0,1129
chr2	21232803	rs584542	T	C	13776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=29.45;SOR=1.110;VQSLOD=4.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3873,381,0
chr2	21235475	rs568413	T	C	9319.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=1.084;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2605,245,0
chr2	21236482	rs488329	A	G	2806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.49;SOR=1.802;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:753,66,0
chr2	21237238	rs3749054	A	T	315.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=1.01;SOR=0.368;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:69:69,0,105
chr2	21239661	rs12720820	T	C	55.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.03;ReadPosRankSum=-1.910e-01;SOR=0.693;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:64:64,0,265
chr2	21241744	rs12720828	C	T	513.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e-01;DB;DP=41;ExcessHet=3.0103;FS=1.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.339;SOR=0.402;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:522,0,549
chr2	21246306	rs12714102	G	C	735.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.800e-02;DB;DP=25;ExcessHet=3.9794;FS=13.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-1.670e-01;SOR=2.933;VQSLOD=11.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:286,0,419
chr2	21250914	rs679899	G	A	2294.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DB;DP=82;ExcessHet=3.9794;FS=6.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.507;SOR=1.199;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1101,0,1153
chr2	21251040	rs570877	T	G	3665.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=-2.089e+00;SOR=0.752;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:476,0,537
chr2	21252365	rs67556837	GAGGA	G	825.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=17;ExcessHet=3.9794;FS=1.752;MQ=60.00;MQRankSum=0.00;QD=17.19;ReadPosRankSum=0.941;SOR=1.329;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,6:17:99:214,0,509
chr2	21255573	rs10701091	C	CCATCT	4688.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=0.568;SOR=0.938;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,15:29:99:588,0,1010
chr2	21260601	rs550619	G	A	975.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.350e-01;DB;DP=12;ExcessHet=3.0103;FS=7.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.50;ReadPosRankSum=-1.419e+00;SOR=4.407;VQSLOD=13.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:199,0,193
chr2	21263639	rs531819	T	G	1521.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=1.52;SOR=1.217;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:88:88,0,387
chr2	21265141	rs661665	C	A	792.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=0.475;SOR=0.984;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:59:59,0,139
chr2	21265518	rs12714264	A	T	244.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=13;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=0.484;SOR=2.093;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:253,0,170
chr2	21360583	rs312966	A	G	1962.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=81;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=1.44;SOR=0.682;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,36:81:99:911,0,1195
chr2	21364968	rs147353491	T	C	664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357e+00;DB;DP=44;ExcessHet=3.0103;FS=1.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.507;SOR=0.721;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,24:44:99:673,0,552
chr2	23755208	rs748857	A	G	864.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=-1.501e+00;SOR=1.542;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:55:311,0,55
chr2	23785517	rs4665225	A	G	1879.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.816e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.41;ReadPosRankSum=0.221;SOR=0.978;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,9:23:99:0|1:23785517_A_G:336,0,882:23785517
chr2	23785524	rs11686638	C	A	1807.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.11;ReadPosRankSum=-5.990e-01;SOR=0.877;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,10:21:99:0|1:23785517_A_G:382,0,819:23785517
chr2	23862187	rs540290	C	G	2998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DB;DP=137;ExcessHet=3.9794;FS=1.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.293;SOR=0.810;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,68:137:99:1716,0,1687
chr2	23865014	rs497973	G	A	742.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423e+00;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=0.459;SOR=0.602;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:483,0,731
chr2	23865260	rs642931	T	C	8487.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060e-01;DB;DP=199;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.496;SOR=0.687;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,93:199:99:2504,0,2878
chr2	23865908	rs527176	G	C	3693.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-02;DB;DP=143;ExcessHet=3.9794;FS=4.171;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.344;SOR=0.483;VQSLOD=7.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,81:143:99:1912,0,1458
chr2	23907532	rs66787697	TCTC	T	1625.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.27;SOR=1.270;VQSLOD=5.40;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,15:15:45:665,45,0
chr2	23916032	rs56228887	TC	T	844.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.46;SOR=4.977;VQSLOD=6.08;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:196,18,0
chr2	23919375	rs3795942	C	T	1443.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.41;DB;DP=31;ExcessHet=1.5490;FS=1.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.340;SOR=1.255;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:92:1037,92,0
chr2	23925980	rs12466745	T	C	3076.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=51;ExcessHet=1.5490;FS=1.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=-4.070e-01;SOR=0.593;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1810,153,0
chr2	23926659	rs3795948	T	C	4104.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=101;ExcessHet=1.5490;FS=1.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=0.031;SOR=0.651;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3199,303,0
chr2	23926932	rs3795949	C	A	277.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:148,12,0
chr2	23929181	rs4233702	G	T	135.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	23985329	rs2712070	A	T	708.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.137e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=1.05;SOR=1.460;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr2	24009163	rs9636434	A	G	1992.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330e-01;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.17;ReadPosRankSum=-1.605e+00;SOR=0.659;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1155,96,0
chr2	24042550	rs2879639	C	T	4777.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=1.981;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1343,123,0
chr2	24055058	rs10432637	G	C	20038.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.07;SOR=0.872;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,195:195:99:6088,585,0
chr2	24092773	rs2176263	G	C	1344.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.27;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=0.228;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:601,42,0
chr2	24108652	rs7579201	T	C	9314.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.85;SOR=0.759;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2790,282,0
chr2	24110611	rs17762465	G	C	422.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.21;ReadPosRankSum=-9.210e-01;SOR=2.985;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:205,18,0
chr2	24110911	rs34093830	G	GA	421.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=9;ExcessHet=3.9794;FS=4.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.59;SOR=1.981;VQSLOD=6.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,8:9:1:198,0,1
chr2	24181521	rs2339885	C	T	412.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=4.977;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:188,15,0
chr2	24193947	rs10166036	G	A	367.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501e+00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.99;ReadPosRankSum=-8.420e-01;SOR=1.244;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr2	24194314	rs1533440	C	T	1364.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.120e-01;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=-6.750e-01;SOR=0.677;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:939,84,0
chr2	24246175	rs12989842	C	T	5027.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=105;ExcessHet=6.9897;FS=0.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.676;SOR=0.727;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,53:105:99:1390,0,1407
chr2	24246679	rs925228	A	G	3193.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.020e-01;DB;DP=91;ExcessHet=6.9897;FS=10.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=1.03;SOR=1.349;VQSLOD=18.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,41:91:99:1155,0,1474
chr2	24255862	rs10179142	C	G	5010.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=1.038;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1466,124,0
chr2	24262060	rs3731620	G	A	3967.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=118;ExcessHet=3.9794;FS=1.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-6.840e-01;SOR=0.654;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,61:118:99:1692,0,1545
chr2	24272657	rs111634163	C	T	571.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.15;ReadPosRankSum=0.876;SOR=0.756;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:303,0,214
chr2	24276736	rs11125393	T	C	2533.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=125;ExcessHet=3.9794;FS=0.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.904;SOR=0.651;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,63:125:99:1473,0,1500
chr2	24277104	rs12469126	A	G	2593.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DB;DP=106;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=1.33;SOR=0.690;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,48:106:99:1024,0,1243
chr2	24283483	rs12988269	G	T	561.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=-8.670e-01;SOR=0.641;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:305,0,257
chr2	24283853	rs13016301	A	T	857.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.076;SOR=0.859;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:404,0,295
chr2	24291080	rs10194004	A	G	316.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.12;MQRankSum=0.00;QD=16.64;ReadPosRankSum=2.19;SOR=0.793;VQSLOD=-6.907e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:122,0,178
chr2	24300563	rs10209238	T	C	3975.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=135;ExcessHet=3.9794;FS=0.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.258;SOR=0.742;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,73:135:99:1906,0,1356
chr2	24300740	rs10194831	C	G	1287.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=51;ExcessHet=3.9794;FS=3.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-3.120e-01;SOR=1.061;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,19:51:99:422,0,828
chr2	24300932	rs11902756	A	G	128.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.967;SOR=0.527;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,114
chr2	24305512	rs4149372	T	G	70.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:78,0,69
chr2	24306107	rs70944712	C	CT	1598.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=69;ExcessHet=3.9794;FS=1.921;MQ=60.00;MQRankSum=0.00;QD=11.75;ReadPosRankSum=1.06;SOR=0.461;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,34:69:99:748,0,762
chr2	24307250	rs36207095	G	A	4957.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059e+00;DB;DP=151;ExcessHet=3.9794;FS=3.311;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=2.47;SOR=0.523;VQSLOD=5.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,75:151:99:2715,0,3128
chr2	24338428	rs1056123	T	G	1478.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=30;ExcessHet=3.9794;FS=0.868;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.550;SOR=0.891;VQSLOD=6.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:617,0,314
chr2	24338777	rs67847916	CAAA	CAA,C	845.50	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.27;ReadPosRankSum=0.804;SOR=5.670;VQSLOD=1.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,7:14:99:387,220,185,138,0,159
chr2	24342505	rs1056122	T	C	2079.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110e-01;DB;DP=66;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-3.140e-01;SOR=0.653;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,34:66:99:848,0,824
chr2	24342532	rs1134516	G	A	2284.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DB;DP=70;ExcessHet=3.9794;FS=0.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.791;SOR=0.792;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,35:70:99:894,0,883
chr2	24343867	rs10610250	ACTTT	A	661.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.33;ReadPosRankSum=0.416;SOR=0.906;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:282,0,216
chr2	24345562	rs7592020	C	G	1319.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=1.82;SOR=0.616;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:512,0,498
chr2	24345707	rs3795953	C	G	210.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=1.04;SOR=1.085;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:108,0,96
chr2	24347093	rs73920010	A	C	396.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=1.44;SOR=1.179;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:51:263,0,51
chr2	24357657	rs7580772	T	C	229.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:59:59,0,140
chr2	24358001	rs12329297	G	C	1563.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=50;ExcessHet=3.9794;FS=7.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.12;SOR=0.275;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:628,0,812
chr2	24369674	rs11693860	C	T	6523.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=71;ExcessHet=3.0103;FS=4.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=-6.080e-01;SOR=1.081;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2141,213,0
chr2	24384424	rs4665667	T	C	3375.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.473e+00;DB;DP=45;ExcessHet=3.0103;FS=2.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=0.232;SOR=0.477;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1402,135,0
chr2	24387178	rs113322110	G	GC	2656.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.939;DB;DP=18;ExcessHet=3.0103;FS=2.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=0.207;SOR=0.478;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:673,54,0
chr2	24388096	rs4665668	G	A	1360.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.90;DB;DP=16;ExcessHet=3.0103;FS=1.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=-4.640e-01;SOR=1.284;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:506,48,0
chr2	24390517	rs2288072	G	A	2871.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.862e+00;DB;DP=66;ExcessHet=1.5490;FS=8.802;MQ=59.89;MQRankSum=-8.620e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=0.623;SOR=0.232;VQSLOD=0.277;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1964,198,0
chr2	24395269	rs918802	T	C	1888.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;DB;DP=19;ExcessHet=3.0103;FS=2.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=0.00;SOR=1.680;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:717,57,0
chr2	24395294	rs918803	T	C	2744.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.516e+00;DB;DP=37;ExcessHet=3.0103;FS=1.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=1.62;SOR=0.387;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1287,111,0
chr2	24395506	rs889830	T	C	3828.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.419e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.79;ReadPosRankSum=0.917;SOR=0.853;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1621,150,0
chr2	24395641	rs889831	C	T	345.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.51;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	24398281	rs2042467	T	G	2735.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=48;ExcessHet=3.0103;FS=2.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=1.34;SOR=1.022;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1391,134,0
chr2	24398446	rs2042468	A	T	2142.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.400e-01;DB;DP=39;ExcessHet=1.5490;FS=3.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=0.066;SOR=1.177;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:24398446_A_T:1522,117,0:24398446
chr2	24398454	rs116450336	T	A	850.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=40;ExcessHet=3.0103;FS=1.317;MQ=60.00;MQRankSum=0.00;QD=21.26;ReadPosRankSum=2.24;SOR=0.997;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,22:40:99:0|1:24398446_A_T:859,0,690:24398446
chr2	24398455	rs75121759	G	A	850.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=40;ExcessHet=3.0103;FS=1.317;MQ=60.00;MQRankSum=0.00;QD=21.26;ReadPosRankSum=2.19;SOR=0.997;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,22:40:99:0|1:24398446_A_T:859,0,690:24398446
chr2	24402127	rs61193015	C	CAA	4776.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=37;ExcessHet=3.0103;FS=4.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.22;ReadPosRankSum=-3.610e-01;SOR=1.143;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1639,111,0
chr2	24426438	rs112277321	C	G	92.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.39;ReadPosRankSum=-1.910e-01;SOR=2.093;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:99:101,0,227
chr2	24431463	rs9917402	T	G	1340.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=0.414;SOR=4.235;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:381,27,0
chr2	24432211	rs2303293	C	T	3414.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.594;DB;DP=33;ExcessHet=3.0103;FS=1.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=-2.070e-01;SOR=0.562;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1159,99,0
chr2	24432620	rs2303294	A	G	1520.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=3.556;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:756,60,0
chr2	24432667	rs2303295	C	G	3361.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.190;DB;DP=38;ExcessHet=3.0103;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=-3.720e-01;SOR=1.039;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1228,114,0
chr2	24433483	.	CA	C	50.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.62;ReadPosRankSum=1.15;SOR=0.551;VQSLOD=5.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,2:5:27:27,0,36
chr2	24440997	rs2551183	A	T	2464.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.84;SOR=2.737;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:24440986_A_T:764,69,0:24440986
chr2	24475205	rs4450560	T	C	8562.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=2.124;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2231,206,0
chr2	24483772	rs34385491	C	CAAA	173.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.68;SOR=3.611;VQSLOD=4.97;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
chr2	24484150	rs4665680	T	C	2911.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.66;SOR=2.247;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1116,99,0
chr2	24484840	rs67295128	GCATT	G	71.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.57;SOR=2.303;VQSLOD=3.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	24498839	rs4411652	T	G	1744.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.23;SOR=5.376;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:558,45,0
chr2	24507757	.	ATTT	A,AT	893.10	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.257;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.64;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=-1.369e+00;SOR=2.362;VQSLOD=6.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,4:6:22:178,77,60,40,0,22
chr2	24518796	rs4233705	C	T	461.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.80;SOR=5.136;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	24521493	rs7559133	C	T	4917.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=1.626;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1668,153,0
chr2	24521766	rs6707600	C	T	1852.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.96;SOR=5.097;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:56:588,56,0
chr2	24550867	.	CA	C	3162.11	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=1.66;SOR=1.335;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,39:45:99:1043,107,0
chr2	24896389	rs4665712	T	G	3592.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.661e+00;DB;DP=46;ExcessHet=3.9794;FS=1.155;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.085;SOR=0.798;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1505,138,0
chr2	24905927	rs11125744	G	C	7403.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=0.895;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1985,198,0
chr2	24933592	rs10716492	AT	A	583.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.70;POSITIVE_TRAIN_SITE;QD=26.43;SOR=5.670;VQSLOD=6.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:186,15,0
chr2	24933689	rs7593430	A	C	3149.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=30.22;SOR=3.535;VQSLOD=5.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:691,57,0
chr2	24949703	rs61079908	TA	T	84.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.39;ReadPosRankSum=1.15;SOR=0.892;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:11:61,0,11
chr2	24952740	rs11439247	C	CT	3127.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.82;POSITIVE_TRAIN_SITE;QD=24.04;SOR=2.804;VQSLOD=5.31;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:72:927,72,0
chr2	24962137	rs10865308	C	T	652.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.66;SOR=5.421;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:24962114_G_T:315,21,0:24962114
chr2	24962138	rs6739575	A	G	652.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=5.549;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:24962114_G_T:315,21,0:24962114
chr2	24974945	rs11125763	T	G	6324.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=0.736;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2157,207,0
chr2	25013062	rs10177595	T	C	657.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.177;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=2.04;SOR=1.528;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:337,24,0
chr2	25013523	rs12471620	G	C	1148.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.782e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=1.68;SOR=1.329;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:558,45,0
chr2	25022328	rs12475751	G	C	371.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=1.15;SOR=0.610;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
chr2	25022442	rs34475213	TA	T	1624.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.560e-01;DB;DP=19;ExcessHet=3.0103;FS=5.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.25;ReadPosRankSum=0.358;SOR=1.546;VQSLOD=6.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,16:19:55:441,55,0
chr2	25037042	rs1003064	G	A	489.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-1.241e+00;SOR=0.223;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:279,21,0
chr2	25037489	rs10618594	TCA	T	191	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
chr2	25038268	rs2082881	G	A	1339.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.428e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.45;ReadPosRankSum=-3.900e-01;SOR=3.160;VQSLOD=19.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:416,33,0
chr2	25038876	rs934609	G	C	554.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.20;ReadPosRankSum=1.07;SOR=1.981;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr2	25039804	rs2099505	G	A	2197.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.97;SOR=4.103;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:669,54,0
chr2	25040335	rs57556645	C	CAAAAAAA	1171.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.80;SOR=4.712;VQSLOD=5.86;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:33:1|1:25040335_C_CAAAAAAA:495,33,0:25040335
chr2	25040346	rs11680229	G	A	1188.62	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=12;ExcessHet=3.0103;FS=8.526;MQ=60.00;MQRankSum=0.00;QD=32.12;ReadPosRankSum=2.81;SOR=2.694;VQSLOD=15.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:25040335_C_CAAAAAAA:519,36,0:25040335
chr2	25040423	rs10178420	G	A	3678.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.054e+00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=-3.040e-01;SOR=0.762;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1261,124,0
chr2	25042625	rs1044040	C	G	997.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=6.518;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr2	25043044	.	T	G	44.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DP=15;ExcessHet=3.0103;FS=11.139;MQ=60.00;MQRankSum=0.00;QD=3.00;ReadPosRankSum=-1.504e+00;SOR=3.234;VQSLOD=9.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,4:15:51:51,0,154
chr2	25046090	rs1127568	T	C	2642.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.220e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.53;ReadPosRankSum=-6.790e-01;SOR=0.884;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:909,81,0
chr2	25046355	rs4665273	T	C	1463.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=15;ExcessHet=3.9794;FS=1.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=0.549;SOR=0.550;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:583,45,0
chr2	25046361	rs5829941	A	AT,ATT	956.85	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.188;DB;DP=6;ExcessHet=3.9794;FS=1.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.14;ReadPosRankSum=2.09;SOR=0.437;VQSLOD=6.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,3:6:44:529,86,44,90,0,48
chr2	25047408	rs7604576	A	G	4163.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=77;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-1.810e-01;SOR=0.725;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,76:77:99:2363,190,0
chr2	25048847	rs2289090	A	G	10194.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.004e+00;DB;DP=130;ExcessHet=3.0103;FS=0.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=-9.320e-01;SOR=0.784;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4228,390,0
chr2	25049159	rs934611	A	G	3067.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=7.328;VQSLOD=24.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1070,84,0
chr2	25050977	rs7566416	T	C	6934.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.90;DB;DP=89;ExcessHet=3.0103;FS=3.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.57;ReadPosRankSum=0.647;SOR=0.456;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2822,267,0
chr2	25051221	rs13005690	G	A	242.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=1.609;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr2	25054261	rs753529	G	A	183.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=3.611;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr2	25057263	rs2278485	G	A	129.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.10;ReadPosRankSum=-7.320e-01;SOR=0.223;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:43:43,0,202
chr2	25057298	rs2278486	C	G	954.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=9;ExcessHet=6.9897;FS=6.651;MQ=59.95;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=25.81;ReadPosRankSum=2.10;SOR=4.047;VQSLOD=-2.015e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:51:218,0,51
chr2	25059638	rs4665733	G	C	65.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:73,0,76
chr2	25061270	rs145368937	GGGGTGGGGT	G	1871.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.27;ReadPosRankSum=0.868;SOR=4.133;VQSLOD=2.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,12:13:18:501,0,18
chr2	25061810	rs377483153	AT	A	795.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;DB;DP=35;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.80;ReadPosRankSum=-1.081e+00;SOR=0.743;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,17:35:99:256,0,263
chr2	25062634	rs11125810	A	G	4859.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.87;SOR=7.258;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1423,99,0
chr2	25063142	rs934608	G	A	779.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DB;DP=18;ExcessHet=6.9897;FS=4.235;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=1.09;SOR=0.245;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:247,0,276
chr2	25064079	rs2241757	G	A	247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=26;ExcessHet=3.0103;FS=2.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=1.42;SOR=1.802;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:256,0,553
chr2	25064193	rs2241759	G	A	2118.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=97;ExcessHet=3.9794;FS=3.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.528;SOR=1.014;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,46:97:99:1174,0,1214
chr2	25174007	rs1439097	G	C	513.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.44;ReadPosRankSum=1.15;SOR=3.767;VQSLOD=16.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:25174007_G_C:180,12,0:25174007
chr2	25174012	rs1439096	A	C	513.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.11;ReadPosRankSum=1.15;SOR=3.767;VQSLOD=16.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:25174007_G_C:180,12,0:25174007
chr2	25194741	rs7593864	G	A	22625.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=307;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=-6.060e-01;SOR=0.765;VQSLOD=6.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,307:307:99:8655,918,0
chr2	25224771	rs7568153	C	A	187.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=3.332;MQ=56.84;MQRankSum=1.38;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=-1.383e+00;SOR=2.303;VQSLOD=-3.892e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
chr2	25224782	rs6545858	C	A	211.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=55.75;POSITIVE_TRAIN_SITE;QD=34.67;SOR=1.329;VQSLOD=3.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	25314186	rs2918630	T	C	2275.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DB;DP=108;ExcessHet=3.9794;FS=1.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-2.103e+00;SOR=0.678;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,51:108:99:1270,0,1500
chr2	25359422	rs3731631	G	A	6815.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250e+00;DB;DP=149;ExcessHet=3.9794;FS=0.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.040;SOR=0.654;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,68:149:99:1391,0,2108
chr2	25375105	rs3795955	T	C	1361.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=3.9794;FS=6.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.27;ReadPosRankSum=0.389;SOR=2.476;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:275,0,130
chr2	25377176	rs2164808	T	C	12318.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862e+00;DB;DP=178;ExcessHet=3.0103;FS=2.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-4.780e-01;SOR=0.475;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,93:178:99:2132,0,2124
chr2	25383887	rs1042571	G	A	4558.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250e+00;DB;DP=102;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=0.558;SOR=0.770;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,44:102:99:1284,0,1903
chr2	25387858	rs3039380	G	GACC	570.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.79;SOR=2.833;VQSLOD=5.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	25458379	rs10084238	G	A	1844.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=-1.846e+00;SOR=0.518;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,16:22:99:473,0,160
chr2	25458546	rs2304429	C	T	5892.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.680e-01;DB;DP=79;ExcessHet=3.0103;FS=2.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=-9.180e-01;SOR=0.512;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,38:79:99:976,0,1122
chr2	25458936	.	CT	C	35.92	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=17.96;SOR=2.303;VQSLOD=1.77;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	25462327	rs72810046	C	G	668.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-5.400e-02;SOR=0.654;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:677,0,833
chr2	25463483	rs2289195	G	A	3478.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.374e+00;DB;DP=61;ExcessHet=3.9794;FS=2.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.298;SOR=0.498;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,59:61:99:1869,133,0
chr2	25463871	rs734693	C	T	681.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=5.784;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:277,21,0
chr2	25466888	rs2289093	G	T	7201.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=34.46;SOR=0.803;VQSLOD=4.98;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2083,183,0
chr2	25469502	rs2276598	C	T	1806.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.610e-01;DB;DP=156;ExcessHet=3.0103;FS=2.931;MQ=59.88;MQRankSum=1.01;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.624;SOR=0.463;VQSLOD=2.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,78:156:99:1815,0,1924
chr2	25469913	rs2276599	C	T	10018.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.738e+00;DB;DP=100;ExcessHet=3.0103;FS=5.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.06;ReadPosRankSum=-1.606e+00;SOR=2.058;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3155,299,0
chr2	25472784	rs11681447	C	T	2484.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.81;SOR=4.648;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:554,42,0
chr2	25497684	.	A	AC	1074.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-02;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-2.270e-01;SOR=0.902;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,13:25:99:482,0,407
chr2	25498565	rs55896493	C	G	330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702e+00;DB;DP=17;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=0.604;SOR=0.204;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:339,0,208
chr2	25505793	rs72810068	T	C	37.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.73;ReadPosRankSum=1.50;SOR=0.105;VQSLOD=22.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:46:46,0,294
chr2	25551692	rs12995245	C	T	510.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.581;SOR=1.159;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:365,0,501
chr2	25602142	rs2304426	G	A	4917.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=86;ExcessHet=3.9794;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=0.798;SOR=0.772;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,39:86:99:1081,0,1242
chr2	25602310	rs2304427	C	T	2004.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DB;DP=94;ExcessHet=3.9794;FS=1.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=-2.700e-02;SOR=0.793;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,43:94:99:1022,0,1282
chr2	25602450	rs2304428	A	G	1360.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.16;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.88;ReadPosRankSum=0.921;SOR=1.140;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:62:62,0,212
chr2	25650631	rs34648410	A	G	1253.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=36;ExcessHet=3.9794;FS=1.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=1.41;SOR=0.979;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:544,0,536
chr2	25650668	rs3832082	C	CT	866.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=16;ExcessHet=3.9794;FS=3.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.597;SOR=2.073;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:339,0,163
chr2	25655446	rs2292225	T	G	1243.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.92;ReadPosRankSum=0.368;SOR=1.390;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,16:17:41:642,41,0
chr2	25656880	rs1395949	C	G	2605.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=37;ExcessHet=3.9794;FS=3.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=0.832;SOR=0.377;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,9:37:99:229,0,762
chr2	25754235	rs539879	T	C	146.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=17;ExcessHet=3.0103;FS=5.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-3.700e-01;SOR=2.494;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:155,0,314
chr2	25875401	rs137982132	T	TA	855.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DB;DP=32;ExcessHet=6.9897;FS=1.645;MQ=59.91;MQRankSum=0.00;QD=8.00;ReadPosRankSum=-9.910e-01;SOR=0.542;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,15:32:99:286,0,201
chr2	25973309	rs10178552	C	T	478.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499e+00;DB;DP=19;ExcessHet=3.9794;FS=3.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.161;SOR=0.169;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:233,0,400
chr2	25994220	rs6721104	A	C	497.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216e+00;DB;DP=33;ExcessHet=3.0103;FS=1.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-5.230e-01;SOR=1.201;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:506,0,474
chr2	26068509	rs6741640	C	T	508.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;DB;DP=5;ExcessHet=3.0103;FS=8.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=1.23;SOR=0.045;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:140,15,0
chr2	26082046	rs34236477	GT	G	665.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=0.425;SOR=0.551;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,10:14:99:0|1:26082046_GT_G:408,0,242:26082046
chr2	26082057	rs13422450	T	C	752.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=14;ExcessHet=6.9897;FS=3.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.849;SOR=0.301;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,10:14:99:0|1:26082046_GT_G:408,0,242:26082046
chr2	26151643	rs2072695	A	T	156	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=-1.383e+00;SOR=0.527;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr2	26152793	rs3731640	G	A	177.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=28;ExcessHet=3.0103;FS=1.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.33;ReadPosRankSum=0.255;SOR=1.179;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,8:28:99:186,0,566
chr2	26161226	rs11388254	C	CA	127.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DB;DP=49;ExcessHet=6.9897;FS=3.171;MQ=59.98;MQRankSum=0.00;QD=1.31;ReadPosRankSum=0.611;SOR=1.095;VQSLOD=4.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,6:49:3:3,0,868
chr2	26174882	rs41285967	T	C	2050.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607e+00;DB;DP=77;ExcessHet=3.9794;FS=0.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=1.06;SOR=0.591;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,45:77:99:1098,0,846
chr2	26177198	rs17047211	A	G	2679.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.87;DB;DP=111;ExcessHet=3.9794;FS=2.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=1.04;SOR=0.551;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,56:111:99:1388,0,1257
chr2	26179540	rs6724038	T	C	368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-5.360e-01;SOR=0.622;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:81:81,0,253
chr2	26203678	rs1465878	T	C	22613.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.49;SOR=1.148;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,242:242:99:7669,725,0
chr2	26204640	rs6721440	G	A	7025.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=164;ExcessHet=1.5490;FS=0.964;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.315;SOR=0.606;VQSLOD=6.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,162:164:99:5108,440,0
chr2	26321526	rs11678157	T	C	2867.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.75;DB;DP=31;ExcessHet=3.0103;FS=1.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=1.86;SOR=0.880;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1069,93,0
chr2	26350136	rs2289022	G	T	5170.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.592;DB;DP=67;ExcessHet=3.0103;FS=1.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=2.13;SOR=0.539;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2022,200,0
chr2	26357748	rs2243834	G	T	3739.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.370e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=-5.900e-02;SOR=0.693;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1315,123,0
chr2	26358110	rs6705	G	C	767.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=0.608;SOR=2.494;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:203,0,22
chr2	26398943	rs13432932	C	T	625.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.540e-01;DB;DP=15;ExcessHet=1.5490;FS=2.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=-6.710e-01;SOR=0.180;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,14:15:1:338,1,0
chr2	26399214	rs4665830	G	A	13299.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.224;DB;DP=266;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=0.198;SOR=0.672;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,266:266:99:8092,795,0
chr2	26399481	rs11675057	C	G	1057.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.65;DB;DP=21;ExcessHet=1.5490;FS=4.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=0.177;SOR=1.602;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,20:21:17:645,17,0
chr2	26405985	rs10779956	A	G	3487.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.774e+00;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=1.35;SOR=0.763;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1470,141,0
chr2	26408064	rs4665833	T	C	1790.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=1.047;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:397,36,0
chr2	26409950	rs892447	G	A	784.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=1.34;SOR=1.308;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:404,30,0
chr2	26414635	rs114021904	C	T	253.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.619;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:262,0,186
chr2	26415088	rs34898931	TA	T	320.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500e-01;DB;DP=18;ExcessHet=6.9897;FS=3.385;MQ=60.00;MQRankSum=0.00;QD=4.28;ReadPosRankSum=-9.400e-01;SOR=1.121;VQSLOD=4.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:60:60,0,255
chr2	26415429	rs5001914	A	G	1858.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=15;ExcessHet=3.0103;FS=6.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.05;ReadPosRankSum=-1.109e+00;SOR=1.942;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:496,45,0
chr2	26416301	rs7582341	A	G	4418.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=50;ExcessHet=3.0103;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.48;ReadPosRankSum=0.645;SOR=0.556;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1681,150,0
chr2	26417533	rs1865324	C	A	1447.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.465e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=-1.930e-01;SOR=0.892;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
chr2	26420708	rs13387855	T	G	3456.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.14;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=1.18;SOR=0.731;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1603,159,0
chr2	26420809	rs2289019	G	C	1152.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.94;ReadPosRankSum=0.497;SOR=2.833;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:437,30,0
chr2	26438276	rs962217	T	C	583.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.42;ReadPosRankSum=-6.520e-01;SOR=2.833;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:221,15,0
chr2	26454996	rs7593175	A	G	1666.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.92;SOR=4.804;VQSLOD=16.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:691,57,0
chr2	26460072	rs12998092	C	T	1053.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=6.593;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:528,39,0
chr2	26467666	rs3806516	G	A	750.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.27;SOR=4.514;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:335,24,0
chr2	26477125	rs147970487	G	GACT	1535.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.545e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=-7.570e-01;SOR=0.726;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:530,36,0
chr2	26484080	rs70950178	A	ACC	698.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.960e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.64;ReadPosRankSum=-8.580e-01;SOR=0.788;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:442,36,0
chr2	26496424	rs78003085	C	T	965.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.270e-01;DB;DP=76;ExcessHet=3.0103;FS=0.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-8.480e-01;SOR=0.866;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,40:76:99:974,0,849
chr2	26500101	.	CT	C	363.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DP=20;ExcessHet=6.9897;FS=11.823;MQ=60.00;MQRankSum=0.00;QD=6.74;ReadPosRankSum=0.704;SOR=1.762;VQSLOD=1.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,4:20:53:53,0,193
chr2	26508607	.	G	GTTTTTT	599.22	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.40;MQRankSum=-3.330e-01;QD=28.45;ReadPosRankSum=-4.340e-01;SOR=0.446;VQSLOD=0.368;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:224,15,0
chr2	26512957	rs1056471	G	C	2284.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=28;ExcessHet=3.0103;FS=1.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=-3.890e-01;SOR=1.416;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:966,83,0
chr2	26532491	rs2007556	G	T	5676.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.160e-01;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=0.00;SOR=0.730;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2140,206,0
chr2	26532735	rs3856397	G	A	4851.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.450e+00;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=1.63;SOR=0.683;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1778,167,0
chr2	26533023	rs3851967	C	T	12453.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.972;DB;DP=169;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-2.900e-01;SOR=0.806;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5059,506,0
chr2	26534244	rs150925353	C	T	2430.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;DB;DP=237;ExcessHet=3.0103;FS=0.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-6.000e-03;SOR=0.763;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,107:237:99:2439,0,3077
chr2	26534801	rs7568529	G	A	5648.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.287;DB;DP=89;ExcessHet=3.0103;FS=3.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=-6.600e-02;SOR=1.026;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2738,267,0
chr2	26535144	rs11429559	T	TG	139.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.319;SOR=2.303;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
chr2	26536555	rs7566473	T	C	4435.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.620e-01;DB;DP=40;ExcessHet=3.0103;FS=1.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=-1.906e+00;SOR=0.914;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1515,120,0
chr2	26536694	rs2052937	C	T	8836.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.470e-01;DB;DP=100;ExcessHet=3.0103;FS=5.477;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=-1.207e+00;SOR=1.081;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3085,300,0
chr2	26537091	rs147400327	A	G	120.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=8;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.253;SOR=0.039;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:129,0,140
chr2	26537324	rs149482937	G	C	765.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872e+00;DB;DP=65;ExcessHet=3.0103;FS=1.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-2.320e-01;SOR=0.416;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:774,0,1181
chr2	26537499	rs10187359	A	C	10906.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=1.538;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3777,344,0
chr2	26541158	rs11904514	G	A	589.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.687e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.47;ReadPosRankSum=-7.550e-01;SOR=1.708;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr2	26587076	rs11674089	G	A	1993.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DB;DP=52;ExcessHet=3.9794;FS=3.357;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=1.59;SOR=0.449;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1494,156,0
chr2	26590084	rs6748996	T	G	5581.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=93;ExcessHet=3.9794;FS=3.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=1.53;SOR=0.908;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2869,278,0
chr2	26590118	rs6731447	C	T	4722.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.000e-03;DB;DP=80;ExcessHet=3.9794;FS=3.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.217;SOR=0.908;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2382,240,0
chr2	26607992	rs934280	T	C	7159.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.28;SOR=2.400;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1920,171,0
chr2	26609469	rs7585892	G	A	2303.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.33;DB;DP=45;ExcessHet=3.9794;FS=2.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=0.818;SOR=1.075;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1404,135,0
chr2	26637068	rs1344734	C	T	332.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.341;DB;DP=7;ExcessHet=3.0103;FS=5.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=-8.420e-01;SOR=3.258;VQSLOD=17.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:281,21,0
chr2	26647277	rs7423300	T	G	2153.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.210e-01;DB;DP=24;ExcessHet=3.0103;FS=1.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=-1.489e+00;SOR=1.108;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:817,72,0
chr2	26647334	rs79594098	G	A	224.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.39;ReadPosRankSum=-7.890e-01;SOR=1.230;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:59:233,0,59
chr2	26652671	rs4356622	A	G	1508.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=15;ExcessHet=3.0103;FS=6.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=-7.970e-01;SOR=2.028;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:542,45,0
chr2	26653826	rs5830013	C	CT	163.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-6.010e-01;SOR=0.299;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:3:74,0,3
chr2	26663187	rs138497746	T	G	652.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=5;ExcessHet=3.0103;FS=5.473;MQ=59.53;MQRankSum=-1.359e+00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=-4.390e-01;SOR=2.461;VQSLOD=0.298;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:180,15,0
chr2	26667130	rs3795958	A	G	1641.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.870e-01;DB;DP=54;ExcessHet=6.9897;FS=3.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-5.730e-01;SOR=0.966;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,20:54:99:452,0,779
chr2	26667615	rs939820	T	C	11134.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=1.073;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4282,414,0
chr2	26671092	.	C	CA	328.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.780e-01;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.55;MQRankSum=0.00;QD=6.71;ReadPosRankSum=-8.050e-01;SOR=0.693;VQSLOD=5.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:17:99:106,0,112
chr2	26671544	rs4072407	A	G	6660.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.310e+00;DB;DP=97;ExcessHet=3.0103;FS=1.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=1.06;SOR=0.894;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2809,291,0
chr2	26676322	rs1402962	A	G	7191.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.99;SOR=0.730;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2147,198,0
chr2	26677303	rs2280515	G	T	1928.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.640e-01;DB;DP=22;ExcessHet=3.0103;FS=3.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.56;ReadPosRankSum=-6.500e-02;SOR=0.205;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:654,66,0
chr2	26677810	rs2280516	A	G	2980.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DB;DP=34;ExcessHet=3.0103;FS=1.068;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=0.847;SOR=0.474;VQSLOD=6.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1265,102,0
chr2	26695143	rs6743467	A	G	814.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.418e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=-9.700e-01;SOR=1.329;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr2	26698019	rs4427975	G	C	502.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.515e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-1.210e+00;SOR=0.622;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr2	26698682	rs6712188	G	T	3612.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.052e+00;DB;DP=46;ExcessHet=3.0103;FS=0.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.16;ReadPosRankSum=0.543;SOR=0.583;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1497,137,0
chr2	26699126	rs4335905	C	G	7574.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.016e+00;DB;DP=117;ExcessHet=3.0103;FS=1.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=-7.720e-01;SOR=0.870;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3655,351,0
chr2	26699855	rs2272069	G	C	7041.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.91;DB;DP=71;ExcessHet=3.0103;FS=0.561;MQ=59.93;MQRankSum=-1.162e+00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=-2.156e+00;SOR=0.629;VQSLOD=2.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2664,213,0
chr2	26700248	rs56284635	C	T	3501.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-01;DB;DP=126;ExcessHet=3.9794;FS=2.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-3.700e-02;SOR=0.527;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,71:126:99:1941,0,1485
chr2	26700700	rs4665855	G	A	12903.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.71;DB;DP=151;ExcessHet=3.0103;FS=0.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=0.662;SOR=0.631;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4812,451,0
chr2	26700819	rs55806442	TGG	T	5428.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=45;ExcessHet=3.0103;FS=1.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.58;ReadPosRankSum=1.50;SOR=0.981;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1968,136,0
chr2	26700908	rs6749978	C	G	1324.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.12;DB;DP=14;ExcessHet=3.0103;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.04;ReadPosRankSum=-1.009e+00;SOR=1.378;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:504,42,0
chr2	26702057	rs10714255	GT	G	2366.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.180e-01;DB;DP=23;ExcessHet=3.0103;FS=1.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=-9.630e-01;SOR=1.119;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:854,69,0
chr2	26703369	rs6719195	A	G	1787.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.67;SOR=4.758;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:662,51,0
chr2	26717524	rs143905954	T	TG	307.62	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=-3.660e-01;SOR=2.985;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:143,15,0
chr2	26717641	rs939814	A	G	3553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.06;SOR=3.069;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1254,96,0
chr2	26717944	rs55886964	G	A	1190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.751e+00;DB;DP=89;ExcessHet=3.0103;FS=3.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-9.850e-01;SOR=0.357;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,45:89:99:1199,0,1269
chr2	26724442	rs7589019	A	G	622.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=26;ExcessHet=3.9794;FS=5.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=1.40;SOR=1.777;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:371,0,327
chr2	26724725	rs6547079	T	G	6701.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=1.481;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1880,171,0
chr2	26725045	rs7592534	T	C	667.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.80;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.09;SOR=0.693;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:535,0,542
chr2	26726752	rs884390	G	A	12214.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=219;ExcessHet=3.9794;FS=0.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=0.127;SOR=0.625;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,103:219:99:2602,0,2891
chr2	26733500	rs939817	C	T	3769.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.770e-01;DB;DP=67;ExcessHet=6.9897;FS=0.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=0.460;SOR=0.770;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,32:67:99:794,0,900
chr2	26739423	rs11687696	T	C	7300.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324e+00;DB;DP=145;ExcessHet=3.9794;FS=3.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=0.178;SOR=0.544;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,87:145:99:2201,0,1431
chr2	26739780	rs11126533	C	T	447.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.41;SOR=3.611;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr2	26750557	rs10865425	T	C	7838.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=3.115;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2491,219,0
chr2	26798591	rs1148952	G	A	1486.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.359e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=0.412;SOR=1.117;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:447,36,0
chr2	26800422	rs1053807	G	A	7050.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.594;DB;DP=170;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=0.408;SOR=0.725;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5164,507,0
chr2	26801586	rs1148956	G	A	4495.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.299e+00;DB;DP=93;ExcessHet=1.5490;FS=2.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=0.485;SOR=0.490;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2895,278,0
chr2	26804008	rs744538	A	G	322.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=2.37;SOR=0.693;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:94:187,0,94
chr2	26804218	rs935171	G	A	11526.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.89;SOR=0.750;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3887,396,0
chr2	26818006	rs1148962	T	C	7429.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.419;DB;DP=113;ExcessHet=3.9794;FS=7.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.494;SOR=0.437;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3559,339,0
chr2	26818021	rs1148963	C	T	7355.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.287;DB;DP=112;ExcessHet=3.9794;FS=3.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-2.400e-01;SOR=0.661;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3610,336,0
chr2	26951449	rs1663002	G	A	11478.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.43;SOR=1.727;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3719,353,0
chr2	27155848	rs3820821	C	T	556.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=4.174;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr2	27157400	rs920436	A	G	2265.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=6.736;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:600,48,0
chr2	27163044	rs3739085	T	C	11198.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.352e+00;DB;DP=151;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=0.739;SOR=0.668;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4638,453,0
chr2	27163284	rs11126781	G	A	2198.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.58;QD=30.54;SOR=6.593;VQSLOD=5.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:614,45,0
chr2	27163333	rs11126782	A	G	986.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=4.174;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:290,21,0
chr2	27164806	rs3820823	G	A	7731.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.298e+00;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=0.407;SOR=0.697;VQSLOD=7.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3748,381,0
chr2	27167320	rs6708148	A	G	481	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.02;SOR=5.283;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr2	27169490	rs3769137	T	C	464.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.19;ReadPosRankSum=0.431;SOR=2.985;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	27169637	rs3835821	TC	T	4122.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=28;ExcessHet=3.0103;FS=5.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.00;ReadPosRankSum=2.39;SOR=1.499;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1133,84,0
chr2	27169842	rs11126784	C	A	8315.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=0.603;SOR=0.707;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,103:105:99:3112,265,0
chr2	27246285	rs10865456	C	T	13036.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=0.931;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3708,333,0
chr2	27249245	rs3754733	A	G	19029.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=1.144;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,201:201:99:6104,601,0
chr2	27259794	rs13021112	G	A	8059.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=0.702;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2176,192,0
chr2	27261329	rs11690454	A	G	5842.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.92;SOR=1.747;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1620,138,0
chr2	27262763	rs146244277	GGGA	G	12423.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.74;SOR=1.423;VQSLOD=4.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,111:111:99:4907,334,0
chr2	27263122	rs1866654	T	C	18276.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133e+00;DB;DP=188;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.46;ReadPosRankSum=1.00;SOR=0.305;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,188:188:99:6066,564,0
chr2	27276202	rs3806520	G	A	4963.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.44;SOR=0.953;VQSLOD=19.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1420,120,0
chr2	27279416	rs2384570	A	G	6850.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=1.397;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2227,226,0
chr2	27280092	rs6711384	T	A	5688.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=2.562;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1836,159,0
chr2	27280127	rs6721395	G	A	8328.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=1.863;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2693,243,0
chr2	27280460	rs7560144	A	G	3656.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=28.90;SOR=4.106;VQSLOD=5.54;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1140,87,0
chr2	27290525	rs11681145	A	G	11085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=0.770;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3171,297,0
chr2	27291661	rs7575465	G	A	6103.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=2.636;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1642,126,0
chr2	27292651	rs10865461	T	C	9515.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=1.297;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2856,270,0
chr2	27293150	rs1053609	G	T	8083.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=0.910;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2100,210,0
chr2	27302165	rs2289360	T	C	11931.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=99;ExcessHet=3.0103;FS=3.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.60;ReadPosRankSum=0.622;SOR=2.316;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,97:99:99:3031,248,0
chr2	27303755	rs2736976	A	G	8272.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=1.952;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2540,243,0
chr2	27307769	rs2304682	G	C	12316.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.99;SOR=0.763;VQSLOD=4.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3774,348,0
chr2	27310393	rs2119026	G	A	1618.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.59;SOR=5.943;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:650,48,0
chr2	27315021	rs6754356	G	A	1352.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.78;SOR=7.054;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:570,42,0
chr2	27315064	rs6754371	G	A	2778.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=8.468;VQSLOD=24.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:931,69,0
chr2	27319826	rs9677784	A	G	7308.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=1.209;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2216,212,0
chr2	27321887	rs4665944	A	G	1537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.30;SOR=6.043;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:526,42,0
chr2	27323468	rs4665371	A	C	5154.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.14;ReadPosRankSum=0.578;SOR=0.713;VQSLOD=6.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1422,126,0
chr2	27323936	rs34400677	G	GC	900.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=5.058;VQSLOD=5.80;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,10:10:30:353,30,0
chr2	27324036	rs1057394	G	A	4168.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.837e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=-6.020e-01;SOR=4.693;VQSLOD=13.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:926,72,0
chr2	27324724	rs2384571	G	C	14430.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=0.716;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4243,389,0
chr2	27324751	rs2384572	G	T	15089.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.90;ReadPosRankSum=-1.329e+00;SOR=0.333;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4666,446,0
chr2	27351279	rs1866561	G	A	2861.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=2.247;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:836,69,0
chr2	27351948	rs6715286	T	G	14188.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=0.790;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4448,414,0
chr2	27354173	rs11126874	C	A	3026.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=7.223;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1177,87,0
chr2	27354419	rs11695641	C	T	5535.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.863e+00;DB;DP=99;ExcessHet=3.9794;FS=0.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=-5.180e-01;SOR=0.644;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3321,297,0
chr2	27355454	rs4665948	A	C	3674.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=2.655;VQSLOD=19.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:996,87,0
chr2	27359887	rs11121	C	T	2816.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.890e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.34;ReadPosRankSum=-1.126e+00;SOR=0.843;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1055,87,0
chr2	27423646	rs1275519	T	C	1421.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=58.45;QD=34.68;SOR=0.843;VQSLOD=1.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:306,30,0
chr2	27424496	rs1006898	G	A	12140.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=1.515;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3696,330,0
chr2	27424636	rs1395	G	A	24542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=239;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=0.757;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,239:239:99:7336,715,0
chr2	27426514	rs1275521	G	C	7369.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=1.620;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2306,213,0
chr2	27426878	rs1275522	C	T	2438.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=2.303;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:473,33,0
chr2	27428147	rs1298361	A	G	10494.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=3.326;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2635,226,0
chr2	27428295	rs1275524	A	G	33112.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=317;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=0.801;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,317:317:99:9737,951,0
chr2	27428702	rs1275525	A	C	1633.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=3.056;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:501,36,0
chr2	27428815	rs1275526	C	G	7076.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=1.488;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1823,167,0
chr2	27428877	rs1275527	C	G	9598.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=1.097;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2710,254,0
chr2	27430781	rs1275528	A	G	714.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.46;SOR=2.531;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr2	27435250	rs1275533	A	G	11388.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.89;SOR=0.754;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3272,297,0
chr2	27435374	rs11608	G	A	7514.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.759e+00;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=1.16;SOR=0.531;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2624,264,0
chr2	27440013	rs11306505	CT	C	2541.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=2.920;VQSLOD=6.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:566,54,0
chr2	27440785	rs1275536	C	T	15835.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=1.179;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,160:160:99:4924,480,0
chr2	27448171	.	CT	C	276.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DP=22;ExcessHet=6.9897;FS=2.524;MQ=59.49;MQRankSum=0.00;QD=7.29;ReadPosRankSum=-3.190e-01;SOR=1.831;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:22:81:81,0,162
chr2	27466258	.	CT	C	931.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e-01;DP=26;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-3.810e-01;SOR=0.636;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:26:99:175,0,162
chr2	27486019	.	A	C	132.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DP=10;ExcessHet=3.0103;FS=14.622;MQ=59.01;MQRankSum=0.180;NEGATIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-1.465e+00;SOR=3.900;VQSLOD=-3.526e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:140,0,319
chr2	27499791	rs374636751	CT	C	145.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=12;ExcessHet=6.9897;FS=3.456;MQ=60.00;MQRankSum=0.00;QD=4.56;ReadPosRankSum=-8.760e-01;SOR=1.609;VQSLOD=4.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,6:12:83:88,0,83
chr2	27522543	rs141577308	C	CCTAT	2447.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;DB;DP=19;ExcessHet=3.0103;FS=4.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.65;ReadPosRankSum=-6.090e-01;SOR=0.245;VQSLOD=6.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:846,57,0
chr2	27535311	rs5830041	T	TG	13470.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.78;SOR=0.764;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,116:116:99:4132,352,0
chr2	27549833	rs35568684	CA	C	3587.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.400e-02;DB;DP=50;ExcessHet=3.0103;FS=5.297;MQ=60.00;MQRankSum=0.00;QD=22.42;ReadPosRankSum=1.35;SOR=0.333;VQSLOD=5.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1382,150,0
chr2	27550967	rs1049817	A	G	6501.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.310e-01;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=2.62;SOR=0.648;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2378,237,0
chr2	27556721	rs3739095	G	A	8599.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.830e-01;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=-1.902e+00;SOR=0.700;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3045,291,0
chr2	27558252	rs11684134	A	G	4164.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=75;ExcessHet=3.0103;FS=8.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=1.24;SOR=0.206;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2359,225,0
chr2	27566520	rs11689803	T	A	4871.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.036e+00;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=1.07;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=0.422;SOR=0.686;VQSLOD=2.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2112,199,0
chr2	27579231	rs6760828	T	C	413.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.81;ReadPosRankSum=0.598;SOR=0.941;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	27587922	.	CTT	CT,C	858.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.705;DP=13;ExcessHet=3.0103;FS=4.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=-5.160e-01;SOR=2.780;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,9,4:13:64:339,102,64,209,0,217
chr2	27589810	rs2280737	T	C	12738.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.840e-01;DB;DP=169;ExcessHet=3.0103;FS=0.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=-6.910e-01;SOR=0.650;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5229,504,0
chr2	27591804	rs80051818	T	C	4866.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=51;ExcessHet=3.0103;FS=1.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=-1.835e+00;SOR=0.455;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1742,153,0
chr2	27592423	rs7602534	C	T	9199.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.881;DB;DP=141;ExcessHet=3.0103;FS=1.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=0.044;SOR=0.831;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,139:141:99:4181,374,0
chr2	27595756	rs1528533	G	C	4652.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=32;ExcessHet=3.0103;FS=6.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.87;ReadPosRankSum=-3.000e-01;SOR=0.835;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1194,96,0
chr2	27597805	rs3215365	CTT	C	4051.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.263;DB;DP=39;ExcessHet=3.0103;FS=11.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.07;ReadPosRankSum=0.466;SOR=0.123;VQSLOD=2.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1735,117,0
chr2	27598097	rs4665972	T	C	3602.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.17;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.99;ReadPosRankSum=1.65;SOR=0.651;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:90:1|1:27598097_T_C:1248,90,0:27598097
chr2	27599132	rs12475426	G	A	20223.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=241;ExcessHet=3.0103;FS=0.740;MQ=59.98;MQRankSum=0.983;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=0.073;SOR=0.804;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,241:241:99:7620,722,0
chr2	27600239	rs13472	G	A	16125.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.12;DB;DP=185;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=0.902;SOR=0.783;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:5580,551,0
chr2	27604279	rs4582	A	G	842.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.700e-02;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=0.175;SOR=1.402;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:256,21,0
chr2	27605762	rs34341829	G	A	410.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr2	27606098	rs2384629	A	G	3769.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.26;SOR=4.804;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1216,90,0
chr2	27606586	rs76984581	C	T	1949.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.259e+00;DB;DP=19;ExcessHet=3.0103;FS=7.179;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.97;ReadPosRankSum=0.043;SOR=0.116;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:733,57,0
chr2	27608115	rs1647284	C	T	1849.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.200e-02;DB;DP=25;ExcessHet=3.0103;FS=5.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=-9.590e-01;SOR=0.268;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:831,75,0
chr2	27656036	rs809673	A	G	2328.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.577e+00;DB;DP=40;ExcessHet=3.0103;FS=0.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=-3.100e-02;SOR=0.956;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1158,120,0
chr2	27656822	rs3214499	G	GA	8228.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.059;DB;DP=88;ExcessHet=3.0103;FS=3.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.67;ReadPosRankSum=-1.153e+00;SOR=0.493;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3284,265,0
chr2	27657167	rs704791	T	C	454.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=3;ExcessHet=3.0103;FS=5.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=-1.068e+00;SOR=1.919;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr2	27659491	rs780102	T	C	4856.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.800e-02;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=-6.260e-01;SOR=0.763;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1857,186,0
chr2	27662862	rs200010147	CTTTTTTTTTTTTTTTTTTTTT	C	881.21	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.89;ReadPosRankSum=0.598;SOR=2.448;VQSLOD=5.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:16:50:689,50,0
chr2	27663215	rs1260341	T	A	6237.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.184e+00;DB;DP=87;ExcessHet=3.0103;FS=6.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=0.103;SOR=0.326;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2632,260,0
chr2	27663416	rs1260342	G	T	8679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.460;DB;DP=102;ExcessHet=3.0103;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=-4.840e-01;SOR=0.647;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3423,305,0
chr2	27665361	rs780112	C	G	12934.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.919e+00;DB;DP=191;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=0.989;SOR=0.650;VQSLOD=6.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,191:191:99:5842,573,0
chr2	27667297	rs4803	A	G	2064.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.430e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=1.24;SOR=0.789;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:672,69,0
chr2	27667520	rs10635082	T	TTTTG	969.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.210e-01;DB;DP=6;ExcessHet=3.0103;FS=5.374;MQ=60.00;MQRankSum=0.00;QD=32.33;ReadPosRankSum=-1.709e+00;SOR=0.098;VQSLOD=4.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr2	27669341	rs11333597	AT	A	1706.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.803;DB;DP=20;ExcessHet=3.0103;FS=3.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.21;ReadPosRankSum=-6.900e-02;SOR=2.262;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,20:20:60:749,60,0
chr2	27669365	rs11430923	G	GT	607.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.080e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=-2.530e-01;SOR=1.148;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:309,33,0
chr2	27670307	rs11126999	G	A	6293.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.83;DB;DP=87;ExcessHet=3.0103;FS=0.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.84;ReadPosRankSum=-1.990e-01;SOR=0.780;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2646,260,0
chr2	27676287	rs56076827	A	T	10725.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.240e-01;DB;DP=144;ExcessHet=3.0103;FS=4.106;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=-1.283e+00;SOR=0.466;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4502,430,0
chr2	27677691	rs780104	G	A	1624.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.150e-01;DB;DP=22;ExcessHet=3.0103;FS=1.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.02;ReadPosRankSum=0.281;SOR=1.358;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:622,66,0
chr2	27677763	rs79740025	C	T	939.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=9;ExcessHet=3.0103;FS=11.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.57;ReadPosRankSum=0.135;SOR=3.512;VQSLOD=12.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:342,27,0
chr2	27681598	rs780106	A	C	1607.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.78;ReadPosRankSum=-2.550e-01;SOR=1.146;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:368,30,0
chr2	27682850	rs72819536	G	T	1326.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.490e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.09;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.58;ReadPosRankSum=1.44;SOR=2.147;VQSLOD=-6.170e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:372,27,0
chr2	27684734	rs780107	A	G	4522.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=56;ExcessHet=3.0103;FS=1.182;MQ=59.92;MQRankSum=-6.740e-01;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=-1.680e-01;SOR=0.511;VQSLOD=2.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1945,168,0
chr2	27685388	rs780110	G	A	2161.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.749e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.45;ReadPosRankSum=0.00;SOR=1.007;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:567,48,0
chr2	27688601	rs1647276	C	T	7261.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.21;DB;DP=83;ExcessHet=3.0103;FS=3.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=1.00;SOR=1.004;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2660,249,0
chr2	27702026	rs780115	A	C	271.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.62;SOR=4.174;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	27706640	rs2272417	T	C	6736.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.94;ReadPosRankSum=0.947;SOR=0.665;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2181,177,0
chr2	27715207	rs8395	T	A	3733.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=41;ExcessHet=3.0103;FS=3.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-7.130e-01;SOR=0.389;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1411,123,0
chr2	27715416	rs2303369	C	T	7086.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.247e+00;DB;DP=74;ExcessHet=3.0103;FS=4.686;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.25;ReadPosRankSum=-3.620e-01;SOR=0.415;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2549,222,0
chr2	27715872	rs35996315	C	CTT	255.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=58.77;MQRankSum=0.00;QD=15.02;ReadPosRankSum=-1.282e+00;SOR=0.495;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:193,21,0
chr2	27716004	rs780088	T	C	1720.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.134e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.31;ReadPosRankSum=-9.300e-02;SOR=1.402;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:619,45,0
chr2	27716494	rs704795	G	A	2410.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.480e-01;DB;DP=21;ExcessHet=3.0103;FS=3.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=1.48;SOR=2.466;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:62:797,62,0
chr2	27721971	rs813592	T	C	9987.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.796;DB;DP=101;ExcessHet=3.0103;FS=1.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=-1.685e+00;SOR=0.558;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3181,303,0
chr2	27722416	rs1260320	G	A	4625.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.643;DB;DP=45;ExcessHet=3.0103;FS=0.875;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=-3.660e-01;SOR=0.611;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1423,135,0
chr2	27728777	rs2293572	C	G	8969.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.690e-01;DB;DP=103;ExcessHet=3.0103;FS=1.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=0.782;SOR=0.596;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3247,309,0
chr2	27729480	rs2293571	G	A	14973.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.422e+00;DB;DP=181;ExcessHet=3.0103;FS=3.959;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.94;ReadPosRankSum=1.56;SOR=0.422;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5926,544,0
chr2	27730940	rs1260326	T	C	7811.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.333e+00;DB;DP=87;ExcessHet=3.0103;FS=6.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=-6.460e-01;SOR=1.288;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2848,261,0
chr2	27745764	rs34507360	GT	G	139.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.369;DB;DP=3;ExcessHet=1.5490;FS=2.963;MQ=60.00;MQRankSum=0.00;QD=9.95;ReadPosRankSum=1.06;SOR=0.180;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:59,9,0
chr2	27745946	rs7589217	A	G	1371.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.36;DB;DP=11;ExcessHet=3.0103;FS=4.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.30;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:489,33,0
chr2	27806793	rs145957642	G	GT	758.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=25;ExcessHet=3.9794;FS=5.634;MQ=59.59;MQRankSum=0.728;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=0.496;SOR=1.946;VQSLOD=0.426;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,17:25:99:0|1:27806793_G_GT:530,0,229:27806793
chr2	27838319	rs12233155	T	C	250.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=4.174;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	27853025	rs143625754	G	A	172.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-1.050e-01;SOR=0.255;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:89:89,0,264
chr2	27861707	rs11692692	G	A	3608.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=1.981;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1154,110,0
chr2	27884878	rs1569152	C	T	2691.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.52;SOR=6.244;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:810,60,0
chr2	27887034	rs9678851	C	A	17025.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=182;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.53;ReadPosRankSum=0.425;SOR=0.569;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,181:182:99:5480,531,0
chr2	27905391	rs113178497	C	T	155.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=11.96;SOR=5.421;VQSLOD=12.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:144,12,0
chr2	27995781	rs3736594	A	C	1885.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.68;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.68;ReadPosRankSum=0.466;SOR=2.564;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:753,51,0
chr2	28070071	rs6547811	T	A	1164.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=32;ExcessHet=3.9794;FS=5.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.751;SOR=0.260;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:461,0,440
chr2	28268467	rs6738887	C	T	1157.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=8;ExcessHet=3.0103;FS=5.261;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.29;ReadPosRankSum=0.456;SOR=3.383;VQSLOD=17.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:323,24,0
chr2	28268822	rs1506533	G	A	868.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=6.273;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr2	28464435	rs6737817	T	C	2695.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.68;SOR=4.648;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:547,45,0
chr2	28521057	rs4665408	C	T	420.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.06;ReadPosRankSum=0.524;SOR=2.303;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,110
chr2	28634790	rs12624279	G	A	3028.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;DB;DP=97;ExcessHet=6.9897;FS=0.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-1.770e-01;SOR=0.731;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,52:97:99:1190,0,1075
chr2	28718546	rs9711355	T	C	575.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.99;ReadPosRankSum=0.345;SOR=2.303;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:28718546_T_C:90,6,0:28718546
chr2	28718550	rs9711275	A	G	794.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=5.892;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:28718546_T_C:90,6,0:28718546
chr2	28718897	rs4665423	A	G	9094.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=0.927;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3038,273,0
chr2	28739451	rs12714235	T	G	639.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.45;ReadPosRankSum=-1.687e+00;SOR=3.160;VQSLOD=19.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:221,18,0
chr2	28748451	rs4666084	A	C	514.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.41;SOR=1.609;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:182,15,0
chr2	28748857	rs4666085	T	C	12144.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=0.809;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3815,366,0
chr2	28748916	rs10181687	A	C	8019.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=86;ExcessHet=3.0103;FS=0.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.46;ReadPosRankSum=-1.710e-01;SOR=0.629;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2737,258,0
chr2	28752348	rs4432404	G	A	793.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=58;ExcessHet=3.0103;FS=3.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-5.760e-01;SOR=1.314;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:802,0,786
chr2	28752498	rs6728486	T	C	3751.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=0.795;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:880,69,0
chr2	28752555	rs4473343	T	C	3176.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.402;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=2.07;SOR=0.813;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1101,108,0
chr2	28752727	rs6710800	C	G	1284.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=3.056;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:28752727_C_G:180,12,0:28752727
chr2	28752741	rs6725577	A	G	941.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.93;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:28752727_C_G:180,12,0:28752727
chr2	28760914	rs7589034	T	C	885.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=-4.310e-01;SOR=3.180;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:482,36,0
chr2	28761257	rs7589169	A	G	1963.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=-1.229e+00;SOR=0.681;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:610,54,0
chr2	28761282	rs7589254	A	G	1351.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.650e-01;DB;DP=11;ExcessHet=3.0103;FS=1.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=0.689;SOR=1.094;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:377,33,0
chr2	28763374	rs11127162	G	T	10651.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=161;ExcessHet=3.0103;FS=0.656;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.96;ReadPosRankSum=1.48;SOR=0.639;VQSLOD=6.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:4805,481,0
chr2	28764458	rs11127163	C	A	3468.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.317e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.35;ReadPosRankSum=0.00;SOR=2.041;VQSLOD=6.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1582,120,0
chr2	28766254	rs11127164	T	C	2206.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.324e+00;DB;DP=24;ExcessHet=3.0103;FS=9.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.43;ReadPosRankSum=0.165;SOR=3.489;VQSLOD=13.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:897,72,0
chr2	28771452	rs35161547	CTA	C	2714.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.59;SOR=1.073;VQSLOD=4.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:60:757,60,0
chr2	28771624	rs11680168	T	G	6961.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.97;DB;DP=87;ExcessHet=3.0103;FS=1.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.53;ReadPosRankSum=0.136;SOR=0.570;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2822,261,0
chr2	28771897	rs11680304	T	C	1192.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.640e-01;DB;DP=11;ExcessHet=3.0103;FS=6.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=-5.640e-01;SOR=4.119;VQSLOD=13.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:420,33,0
chr2	28772720	rs12989991	G	A	168.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:105,0,111
chr2	28785754	rs7560628	G	C	1286.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.72;SOR=4.615;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr2	28788428	rs34237604	AG	A	4212.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.93;SOR=1.715;VQSLOD=5.12;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1170,96,0
chr2	28789643	rs10186460	T	C	8369.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DB;DP=247;ExcessHet=6.9897;FS=1.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.226;SOR=0.553;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,110:247:99:2653,0,3348
chr2	28789884	rs12714237	G	A	397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.028e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.147;SOR=0.307;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:132,0,264
chr2	28795893	rs13005799	G	A	1976.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=24;ExcessHet=3.9794;FS=1.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.82;ReadPosRankSum=0.335;SOR=0.481;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:28795893_G_A:1080,72,0:28795893
chr2	28795899	rs13007288	C	T	2011.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.648e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=0.738;SOR=0.698;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:28795893_G_A:1118,75,0:28795893
chr2	28795962	rs13005854	G	A	4335.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.41;DB;DP=84;ExcessHet=3.9794;FS=4.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.702;SOR=1.059;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2753,252,0
chr2	28796291	rs1881251	G	A	1100.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=1.10;SOR=1.007;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:495,36,0
chr2	28816425	rs10176136	T	C	754.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.07;SOR=4.514;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:293,21,0
chr2	28816814	rs11462230	C	CTT,CTTT	2498.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.210e-01;DB;DP=42;ExcessHet=0.4576;FS=4.847;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=-5.780e-01;SOR=0.367;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,18,21:42:99:1411,466,342,437,0,340
chr2	28816948	rs4665429	C	T	3932.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=1.119;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1925,189,0
chr2	28820641	rs1534477	C	T	412.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=-5.240e-01;SOR=1.127;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:96:96,0,181
chr2	28821613	rs35746006	C	T	2963.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=93;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-3.030e-01;SOR=0.671;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,59:93:99:1515,0,753
chr2	28821662	rs7557359	C	T	3714.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.523e+00;DB;DP=53;ExcessHet=3.9794;FS=1.547;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=2.15;SOR=0.536;VQSLOD=6.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,33:53:99:876,0,621
chr2	28824336	rs141173438	C	CCACACA	439.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=7;ExcessHet=3.9794;FS=2.031;MQ=60.00;MQRankSum=0.00;QD=17.56;ReadPosRankSum=-1.260e-01;SOR=0.352;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,221
chr2	28824793	rs7601771	C	G	9098.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.631;DB;DP=153;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.36;ReadPosRankSum=1.44;SOR=0.687;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,67:153:99:1846,0,2377
chr2	28825607	rs67964454	G	A	1748.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DB;DP=69;ExcessHet=3.9794;FS=1.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-8.570e-01;SOR=0.832;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,24:69:99:598,0,1360
chr2	28827026	rs7573051	T	C	1667.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.920e-01;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=1.04;SOR=0.737;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,36:78:99:745,0,1048
chr2	28827625	rs34289907	C	T	2644.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=91;ExcessHet=3.9794;FS=6.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-5.500e-01;SOR=1.069;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,37:91:99:864,0,1297
chr2	28827644	rs36116681	A	G	2217.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DB;DP=80;ExcessHet=3.9794;FS=1.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=1.57;SOR=0.767;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,31:80:99:688,0,1257
chr2	28827912	rs13019586	G	A	486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=22;ExcessHet=3.9794;FS=7.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=0.212;SOR=0.148;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:151,0,390
chr2	28828051	rs4666107	G	A	369.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.46;SOR=3.056;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:28828051_G_A:90,6,0:28828051
chr2	28828052	rs34867080	C	A	185.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.260e-01;DB;DP=2;ExcessHet=1.5490;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=0.253;SOR=3.611;VQSLOD=15.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:28828051_G_A:90,6,0:28828051
chr2	28840344	rs11891377	G	T	1581.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.765e+00;DB;DP=21;ExcessHet=3.9794;FS=8.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=0.00;SOR=0.065;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:376,0,379
chr2	28841021	rs1881256	G	A	1252.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.849;SOR=0.781;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:238,0,371
chr2	28841433	rs116547574	G	C	135.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=1.47;SOR=0.412;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:144,0,175
chr2	28841469	rs115860390	C	T	89.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:98,0,67
chr2	28843871	rs35800423	G	C	2091.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=73;ExcessHet=3.9794;FS=2.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=1.00;SOR=0.459;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,48:73:99:1192,0,526
chr2	28843909	rs35166577	G	A	1658.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=46;ExcessHet=3.9794;FS=1.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=1.04;SOR=0.440;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,30:46:99:998,0,481
chr2	28847666	rs60131348	T	TC	2545.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.45;SOR=7.140;VQSLOD=6.27;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:48:569,48,0
chr2	28849473	rs899149	T	C	624.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134e+00;DB;DP=13;ExcessHet=3.0103;FS=4.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-1.118e+00;SOR=3.126;VQSLOD=17.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:224,0,171
chr2	28851131	rs13013006	G	A	353.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=1.72;SOR=0.551;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:88:142,0,88
chr2	28853352	rs6713038	C	T	1554.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=15;ExcessHet=3.9794;FS=4.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=1.23;SOR=0.164;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:378,0,160
chr2	28853377	rs6731155	T	C	1977.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=24;ExcessHet=3.9794;FS=1.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=-2.300e-02;SOR=0.979;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:517,0,213
chr2	28855088	rs3071742	C	CT	4382.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.810e-01;DB;DP=85;ExcessHet=3.9794;FS=3.115;MQ=59.95;MQRankSum=0.00;QD=16.92;ReadPosRankSum=0.049;SOR=0.513;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,32:85:99:599,0,986
chr2	28855918	rs34314459	A	AG	17443.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=0.932;VQSLOD=4.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,173:173:99:6149,521,0
chr2	28865760	rs2272387	T	C	3710.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DB;DP=78;ExcessHet=3.9794;FS=0.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=1.66;SOR=0.766;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,38:78:99:1003,0,1070
chr2	28865968	rs57817040	T	C	2354.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=1.26;SOR=0.723;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,14:40:99:0|1:28865968_T_C:505,0,1340:28865968
chr2	28865977	rs1052358	C	T	832.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=1.24;SOR=0.682;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,13:37:99:0|1:28865968_T_C:474,0,1283:28865968
chr2	28974466	rs7598876	T	C	264.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.42;ReadPosRankSum=-1.036e+00;SOR=2.093;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr2	28975107	rs2276547	G	C	3148.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=0.428;SOR=0.719;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1573,120,0
chr2	29001691	rs1128416	A	G	1903.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=37;ExcessHet=6.9897;FS=6.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-1.000e-02;SOR=1.204;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:497,0,585
chr2	29011337	rs35618980	TTGTA	T	376.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=0.881;SOR=0.610;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:99:162,0,113
chr2	29041877	rs13009357	T	C	1157.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-2.780e-01;SOR=0.656;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:812,0,689
chr2	29045323	rs4436918	C	T	8093.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=1.117;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2364,240,0
chr2	29052256	rs12998251	T	C	2526.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330e-01;DB;DP=33;ExcessHet=3.0103;FS=4.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=-5.950e-01;SOR=1.596;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:98:968,98,0
chr2	29052283	.	G	GT	171.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DP=11;ExcessHet=6.9897;FS=2.161;MQ=60.00;MQRankSum=0.00;QD=4.09;ReadPosRankSum=-1.063e+00;SOR=0.255;VQSLOD=5.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,6:11:69:69,0,100
chr2	29075164	.	GTTTTT	G	375.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.69;SOR=3.056;VQSLOD=5.11;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:9:1|1:29075164_GTTTTT_G:135,9,0:29075164
chr2	29075170	.	T	TGAGAC	375.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.88;ReadPosRankSum=1.28;SOR=3.056;VQSLOD=4.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:9:1|1:29075164_GTTTTT_G:135,9,0:29075164
chr2	29075178	rs11361106	CA	C	69.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.74;ReadPosRankSum=2.19;SOR=1.270;VQSLOD=4.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:1:39,1,0
chr2	29083850	rs13025081	C	A	410.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.120;SOR=0.622;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:174,0,129
chr2	29087799	rs13030945	C	A	771.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920e-01;DB;DP=19;ExcessHet=3.9794;FS=6.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=-2.600e-02;SOR=2.119;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:237,0,312
chr2	29087814	rs55785599	C	A	1232.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009e+00;DB;DP=24;ExcessHet=6.9897;FS=2.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-1.730e-01;SOR=0.409;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:384,0,224
chr2	29092679	rs4233729	T	C	3468.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=90;ExcessHet=6.9897;FS=2.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-1.050e+00;SOR=0.571;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1311,0,1084
chr2	29092850	rs4666122	G	T	7624.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=232;ExcessHet=6.9897;FS=1.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-6.530e-01;SOR=0.781;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,103:232:99:2504,0,3437
chr2	29129300	rs36066576	AT	A	1405.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319e+00;DB;DP=57;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.90;ReadPosRankSum=1.01;SOR=0.641;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,43:57:86:904,0,86
chr2	29129418	rs11688605	A	G	1630.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e-01;DB;DP=53;ExcessHet=3.9794;FS=1.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.533;SOR=0.555;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,31:53:99:785,0,497
chr2	29135468	rs6715296	C	G	8900.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.01;DB;DP=130;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=0.826;SOR=0.300;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,129:130:99:3772,378,0
chr2	29135790	rs6730523	A	G	379.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.94;SOR=2.303;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:149,12,0
chr2	29136489	rs4666132	G	T	1407.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.900e-02;DB;DP=53;ExcessHet=3.9794;FS=2.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=1.13;SOR=0.975;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,31:53:99:739,0,523
chr2	29136623	rs4666133	T	C	1678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-02;DB;DP=71;ExcessHet=3.9794;FS=0.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=1.01;SOR=0.796;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,40:71:99:917,0,728
chr2	29136653	rs4666134	T	C	1704.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=57;ExcessHet=3.9794;FS=0.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.534;SOR=0.597;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,31:57:99:766,0,640
chr2	29136685	rs12472068	C	T	1170.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.21;SOR=0.605;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:481,0,522
chr2	29140711	rs4389288	G	A	2534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DB;DP=119;ExcessHet=3.9794;FS=1.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=0.614;SOR=0.824;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,59:119:99:1416,0,1587
chr2	29145725	rs9653591	G	T	8103.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.053e+00;DB;DP=96;ExcessHet=0.4576;FS=3.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.16;ReadPosRankSum=-1.599e+00;SOR=0.552;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3229,287,0
chr2	29152376	rs11685826	A	T	310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.18;ReadPosRankSum=0.566;SOR=0.180;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,1:7:85:85,0,203
chr2	29152456	rs1140697	A	G	1611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=31;ExcessHet=6.9897;FS=0.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=2.21;SOR=0.578;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:364,0,388
chr2	29158613	rs70958225	CAAAAA	C	1487.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.950;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.51;MQRankSum=1.56;POSITIVE_TRAIN_SITE;QD=33.80;ReadPosRankSum=2.46;SOR=0.948;VQSLOD=1.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,10:13:8:400,8,0
chr2	29161010	rs4233731	G	A	7361.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=84;ExcessHet=3.0103;FS=10.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.68;ReadPosRankSum=-1.455e+00;SOR=1.477;VQSLOD=18.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2694,251,0
chr2	29164022	rs4666141	G	T	258.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DB;DP=10;ExcessHet=3.9794;FS=4.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=0.210;SOR=0.083;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:90:90,0,267
chr2	29165469	rs10716859	AT	A	46.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.10;SOR=2.303;VQSLOD=4.16;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:58,6,0
chr2	29169194	rs6745598	A	G	168.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=3.611;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr2	29169612	rs3087649	T	C	3786.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.27;SOR=0.946;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2163,177,0
chr2	29217896	rs7563398	C	T	315.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=-1.076e+00;SOR=0.693;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr2	29221481	rs4638746	T	G	263.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.11;SOR=4.174;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr2	29222070	rs13009279	G	A	4798.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e+00;DB;DP=97;ExcessHet=6.9897;FS=0.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-4.050e-01;SOR=0.656;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,48:97:99:1244,0,1389
chr2	29222388	rs57018089	G	C	3717.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=66;ExcessHet=6.9897;FS=2.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=-2.380e-01;SOR=1.124;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,34:66:99:1109,0,1091
chr2	29226498	rs12613325	G	A	10337.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=204;ExcessHet=3.9794;FS=2.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.436;SOR=0.524;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,204:204:99:6092,609,0
chr2	29226512	rs12623297	A	G	9178.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.173e+00;DB;DP=174;ExcessHet=3.9794;FS=1.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=1.85;SOR=0.561;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5589,522,0
chr2	29226559	rs12619829	C	T	4826.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.170e+00;DB;DP=80;ExcessHet=3.9794;FS=2.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=-3.370e-01;SOR=0.962;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2687,239,0
chr2	29239942	rs11685375	T	G	3313.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=75;ExcessHet=6.9897;FS=1.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-2.370e-01;SOR=0.615;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,39:75:99:984,0,869
chr2	29240005	rs13409097	T	C	1161.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=100;ExcessHet=3.0103;FS=2.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=1.46;SOR=0.828;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,44:100:99:1170,0,1317
chr2	29240060	rs11127202	A	G	3695.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.410e-01;DB;DP=88;ExcessHet=6.9897;FS=1.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-3.010e-01;SOR=0.782;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,44:88:99:1058,0,1164
chr2	29240582	rs66482868	T	C	1264.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=40;ExcessHet=6.9897;FS=1.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=0.951;SOR=0.483;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,14:40:99:388,0,753
chr2	29240673	rs35166194	G	A	2009.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DB;DP=100;ExcessHet=6.9897;FS=4.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=-5.940e-01;SOR=0.970;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,33:100:99:789,0,1692
chr2	29240686	rs34261417	A	C	2260.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=109;ExcessHet=6.9897;FS=5.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.69;ReadPosRankSum=-1.268e+00;SOR=1.005;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,39:109:99:859,0,1714
chr2	29240783	rs1109758	A	G	2623.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e-01;DB;DP=91;ExcessHet=6.9897;FS=7.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.692;SOR=0.383;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,42:91:99:1030,0,1118
chr2	29244889	rs62130298	A	C	450.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.21;SOR=3.611;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:467,36,0
chr2	29247458	rs12622784	G	T	209.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.499;SOR=0.175;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:218,0,257
chr2	29249403	rs11692581	T	A	1064.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.77;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.085;SOR=0.560;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:521,42,0
chr2	29249415	rs11685625	C	T	1140.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.435;DB;DP=19;ExcessHet=3.9794;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=0.641;SOR=0.474;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:642,57,0
chr2	29274720	rs895591	A	G	6742.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=305;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.61;SOR=0.654;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:171,134:305:99:3135,0,4132
chr2	29355303	rs4666167	C	T	879.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.674e+00;DB;DP=10;ExcessHet=3.9794;FS=2.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=0.424;SOR=0.176;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
chr2	29355345	rs4666168	T	C	472.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.75;ReadPosRankSum=0.366;SOR=2.985;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0
chr2	29366830	rs3213947	A	G	3206.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=80;ExcessHet=1.5490;FS=2.209;MQ=59.84;MQRankSum=0.777;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=-4.410e-01;SOR=0.505;VQSLOD=2.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2458,240,0
chr2	29366875	rs3217572	C	CACAG	6256.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.686e+00;DB;DP=51;ExcessHet=3.0103;FS=0.892;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=1.66;SOR=0.616;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2294,156,0
chr2	29380393	rs10192072	C	G	599.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.534e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=-1.570e-01;SOR=2.833;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:334,27,0
chr2	29383374	rs2305450	G	A	3945.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=2.677;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1171,108,0
chr2	29386646	rs10200936	G	C	3004.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.046e+00;DB;DP=59;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=-2.290e-01;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1970,177,0
chr2	29404251	rs10178180	G	A	657.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.353e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=-1.039e+00;SOR=1.445;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:468,33,0
chr2	29415792	rs1728828	G	A	460.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.00;SOR=5.136;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr2	29416025	rs10625834	C	CATTG	2070.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=72;ExcessHet=3.9794;FS=10.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-1.510e-01;SOR=1.493;VQSLOD=3.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:49,23:72:99:858,0,2876
chr2	29416366	rs1881421	G	C	5564.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=164;ExcessHet=3.9794;FS=0.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.482;SOR=0.731;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,97:164:99:2628,0,1648
chr2	29416481	rs1881420	T	C	8724.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.516e+00;DB;DP=221;ExcessHet=6.9897;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.606;SOR=0.758;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,137:221:99:3832,0,2129
chr2	29416572	rs1670283	T	C	20865.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=222;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=0.725;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,222:222:99:7039,665,0
chr2	29416946	rs12619135	T	C	548.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DB;DP=17;ExcessHet=3.9794;FS=9.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.597;SOR=3.357;VQSLOD=13.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:289,0,229
chr2	29420315	rs3738870	C	T	1057.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.151;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=1.56;SOR=0.992;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:694,63,0
chr2	29429741	rs10623528	C	CTT	499.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.800e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.11;ReadPosRankSum=-1.800e-01;SOR=2.985;VQSLOD=6.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr2	29429888	rs4666178	G	A	3699.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=1.41;SOR=0.683;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1817,165,0
chr2	29430519	rs3820712	G	T	216.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=0.189;SOR=1.402;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	29430942	rs3832036	GTC	G	2016.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.317;DB;DP=30;ExcessHet=1.5490;FS=6.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=0.313;SOR=1.466;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1218,90,0
chr2	29432982	rs6748797	C	T	222.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.89;SOR=3.912;VQSLOD=18.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr2	29436633	rs1625283	G	T	1575.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.217e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.52;ReadPosRankSum=-7.570e-01;SOR=2.701;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:682,51,0
chr2	29444076	rs1534545	G	T	2275.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.681e+00;DB;DP=64;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=-6.320e-01;SOR=0.618;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1809,192,0
chr2	29444095	rs1569156	C	T	6258.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.26;SOR=1.411;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1812,189,0
chr2	29445458	rs3795850	G	T	3048.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DB;DP=68;ExcessHet=1.5490;FS=3.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=1.03;SOR=1.152;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2306,204,0
chr2	29446184	rs2276550	C	G	5127.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.855e+00;DB;DP=116;ExcessHet=1.5490;FS=1.857;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=-2.640e-01;SOR=0.845;VQSLOD=6.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3588,348,0
chr2	29450684	rs35787487	G	A	41.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.59;ReadPosRankSum=-1.559e+00;SOR=0.593;VQSLOD=21.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:50:50,0,153
chr2	29451503	.	T	G	34.58	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.58;SOR=1.609;VQSLOD=19.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:29451503_T_G:45,3,0:29451503
chr2	29451511	rs11687789	C	G	338.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.80;SOR=2.833;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:29451503_T_G:134,9,0:29451503
chr2	29455016	rs12714270	C	T	532.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.463e+00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=-1.580e-01;SOR=1.828;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	29455267	rs2256740	A	G	9512.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;DB;DP=126;ExcessHet=3.0103;FS=0.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=0.713;SOR=0.733;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3818,378,0
chr2	29498210	rs4589708	A	G	9339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.30;SOR=1.124;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3211,270,0
chr2	29519622	rs2272409	C	T	5004.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.71;SOR=2.758;VQSLOD=5.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1314,122,0
chr2	29520085	rs4666194	G	A	1497.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.37;SOR=7.476;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:372,30,0
chr2	29525341	rs11127213	A	G	1870.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.34;SOR=4.664;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:29525341_A_G:444,33,0:29525341
chr2	29525345	rs11127214	T	C	1603.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.312e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.41;ReadPosRankSum=-7.090e-01;SOR=1.445;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,4:14:99:0|1:29525341_A_G:113,0,366:29525341
chr2	29525654	rs11127215	C	T	2310.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908e+00;DB;DP=15;ExcessHet=3.0103;FS=2.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.01;ReadPosRankSum=0.429;SOR=1.824;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:130,0,350
chr2	29541104	rs2276549	C	T	3063.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.700e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=0.517;SOR=0.640;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:94:925,94,0
chr2	29543663	rs2293564	T	C	7926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.590;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2156,213,0
chr2	29917940	rs2256376	C	G	4349.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.230e-01;DB;DP=64;ExcessHet=3.0103;FS=2.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=-7.680e-01;SOR=1.072;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,37:64:99:1002,0,746
chr2	29940529	rs2246745	A	T	7027.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284e+00;DB;DP=80;ExcessHet=3.0103;FS=0.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.679;SOR=0.621;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1076,0,973
chr2	29940820	rs2270353	C	T	1387.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.85;ReadPosRankSum=1.70;SOR=0.608;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:389,0,123
chr2	30143499	rs4358080	G	C	4291.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.26;SOR=2.325;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1505,120,0
chr2	30381187	rs7603324	A	G	123.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=3.258;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:140,12,0
chr2	30381505	rs1137288	T	C	4136.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=0.929;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4153,389,0
chr2	30479502	rs11675079	T	C	1111.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.302;SOR=0.664;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:393,0,549
chr2	30479545	rs11690392	C	G	2131.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=56;ExcessHet=3.9794;FS=3.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=0.406;SOR=0.210;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,28:56:99:1019,0,989
chr2	30479650	rs11690435	C	T	7551.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=295;ExcessHet=3.9794;FS=1.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.23;SOR=0.794;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:150,145:295:99:3504,0,3523
chr2	30682360	rs829574	G	A	1852.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.37;DB;DP=34;ExcessHet=3.9794;FS=2.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.50;ReadPosRankSum=0.757;SOR=0.428;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1069,101,0
chr2	30748321	rs829618	A	G	323.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.35;ReadPosRankSum=1.38;SOR=2.303;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr2	30775299	rs12053428	G	A	1603.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.366e+00;DB;DP=23;ExcessHet=3.9794;FS=1.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=-4.150e-01;SOR=0.446;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:854,69,0
chr2	30790818	rs6759011	G	T	552.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=1.93;SOR=1.708;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:286,21,0
chr2	30791152	rs6749074	A	G	2351.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.912;DB;DP=29;ExcessHet=3.9794;FS=1.226;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-3.620e-01;SOR=0.435;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1097,87,0
chr2	30828792	rs2248777	G	A	2883.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.29;DB;DP=46;ExcessHet=3.9794;FS=0.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=1.42;SOR=0.606;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1401,137,0
chr2	30955118	rs35481680	G	T	52.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.77;ReadPosRankSum=-1.282e+00;SOR=1.179;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,112
chr2	30955154	rs2609911	A	G	257.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.431;SOR=1.609;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:187,0,218
chr2	30955176	rs2593433	A	G	308.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=16;ExcessHet=3.9794;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.431;SOR=1.942;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:251,0,249
chr2	30955528	rs2276567	C	A	1671.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e+00;DB;DP=25;ExcessHet=3.9794;FS=1.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=0.493;SOR=0.430;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:435,0,367
chr2	30959100	rs2593437	C	G	358.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=1.54;SOR=0.793;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:177,0,138
chr2	30959262	rs509380	G	T	6085.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=101;ExcessHet=3.9794;FS=2.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=2.55;SOR=0.870;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,48:101:99:1127,0,1590
chr2	30966687	rs2253464	G	A	176.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=-3.190e-01;SOR=1.179;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:40:68,0,40
chr2	30968760	.	ATTTTTTT	ATTTT,A	847.83	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.549;DP=7;ExcessHet=3.0103;FS=4.519;MQ=59.55;MQRankSum=2.46;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.28;ReadPosRankSum=0.759;SOR=2.955;VQSLOD=0.183;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,4,2:7:67:230,82,67,148,0,200
chr2	30976058	rs2926304	C	T	3146.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=96;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-2.690e-01;SOR=0.675;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1072,0,1144
chr2	30977073	rs485100	G	A	4873.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=95;ExcessHet=3.9794;FS=8.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=-5.180e-01;SOR=0.384;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,56:95:99:1311,0,920
chr2	30977354	rs482384	C	T	1039.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=1.47;SOR=1.280;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:23:232,0,23
chr2	30980940	rs508405	C	T	815.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.799e+00;DB;DP=25;ExcessHet=6.9897;FS=3.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=0.500;SOR=1.059;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:397,0,280
chr2	30985829	rs498686	C	T	647.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.84;ReadPosRankSum=-9.670e-01;SOR=2.636;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,147
chr2	30986645	rs17324662	C	T	255.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.98;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:72,0,34
chr2	30986853	rs17396613	A	G	486.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=43;ExcessHet=3.0103;FS=1.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.641;SOR=0.477;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,18:43:99:495,0,695
chr2	30986989	rs579016	G	T	13685.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=0.109;SOR=1.281;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4036,396,0
chr2	30999023	rs5830184	AT	A	254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.591;SOR=1.162;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,11:22:99:263,0,252
chr2	31000370	rs6548033	G	C	1333.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.20;ReadPosRankSum=1.00;SOR=1.314;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:249,0,136
chr2	31009876	rs1915126	T	C	384.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.30;SOR=4.804;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	31009977	rs1915125	G	C	2479.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.63;SOR=4.014;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:834,60,0
chr2	31010212	rs13021213	C	T	2413.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=112;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=1.61;SOR=0.677;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,53:112:99:1282,0,1465
chr2	31133939	rs2278079	G	C	1966.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.150e-01;DB;DP=176;ExcessHet=3.0103;FS=1.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.612;SOR=0.571;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,81:176:99:1975,0,2564
chr2	31134106	rs2278078	T	A	194.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=1.22;SOR=0.368;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:203,0,328
chr2	31135184	rs2288101	G	T	1275.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745e+00;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.908;SOR=0.618;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,49:91:99:1284,0,1195
chr2	31168409	rs2303328	A	G	147.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=-4.840e-01;SOR=0.941;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:156,0,108
chr2	31188957	rs889896	C	T	3673.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=5.507;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1150,90,0
chr2	31301555	rs13023792	G	A	142.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.00;SOR=3.258;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	31348335	rs4020219	ACC	A	2591.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.820;DB;DP=31;ExcessHet=3.0103;FS=1.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.56;ReadPosRankSum=0.198;SOR=1.341;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1295,93,0
chr2	31360680	rs2008535	T	A	2438.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.58;DB;DP=70;ExcessHet=3.9794;FS=2.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-7.340e-01;SOR=1.826;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,31:70:99:1085,0,1332
chr2	31401290	rs4952052	A	C	7472.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.49;SOR=1.302;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2143,186,0
chr2	31410708	rs1822496	C	T	10517.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=0.765;VQSLOD=19.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2719,277,0
chr2	31414296	.	GA	G	30.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;DP=13;ExcessHet=4.7712;FS=6.232;MQ=60.00;MQRankSum=0.00;QD=1.52;ReadPosRankSum=0.135;SOR=0.021;VQSLOD=4.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,2:13:14:14,0,221
chr2	31414807	rs1562022	C	G	8637.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=1.036;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2566,246,0
chr2	31415967	rs7591444	T	C	2656.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.83;ReadPosRankSum=0.342;SOR=0.932;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,19:29:99:693,0,281
chr2	31416213	rs11124248	T	C	6545.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=118;ExcessHet=3.9794;FS=4.156;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=1.04;SOR=0.940;VQSLOD=7.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,70:118:99:1920,0,1155
chr2	31416305	rs11124249	C	T	2101.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.13;DB;DP=29;ExcessHet=3.9794;FS=6.739;MQ=60.00;MQRankSum=0.00;QD=24.73;ReadPosRankSum=1.13;SOR=2.107;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,16:29:99:0|1:31416305_C_T:633,0,1379:31416305
chr2	31416309	rs11124250	A	G	2149.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009e+00;DB;DP=29;ExcessHet=3.9794;FS=2.045;MQ=60.00;MQRankSum=0.00;QD=26.54;ReadPosRankSum=0.680;SOR=1.379;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,16:29:99:0|1:31416305_C_T:633,0,1429:31416305
chr2	31416317	rs12619774	C	G	1771.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306e+00;DB;DP=26;ExcessHet=3.9794;FS=4.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.31;ReadPosRankSum=0.904;SOR=2.453;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,14:26:99:0|1:31416305_C_T:552,0,1356:31416305
chr2	31419934	rs6543617	A	G	553.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-1.150e+00;SOR=2.093;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:85,0,31
chr2	31420485	rs1443716	T	C	1511.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=2.935;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:265,21,0
chr2	31424412	rs2365554	T	C	498.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=5.283;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	31424885	rs11692905	C	T	3910.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=90;ExcessHet=3.9794;FS=10.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.854;SOR=1.075;VQSLOD=19.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,31:90:99:756,0,1512
chr2	31428541	rs11687767	A	G	570.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=10;ExcessHet=3.9794;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.71;ReadPosRankSum=0.00;SOR=1.954;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,1:10:12:12,0,291
chr2	31457817	rs2236170	T	C	3876.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=54;ExcessHet=3.9794;FS=14.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=0.433;SOR=2.038;VQSLOD=12.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:887,0,812
chr2	31457981	rs4952073	T	C	606.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=2.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=-1.645e+00;SOR=0.293;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:34:34,0,111
chr2	31467079	rs2295471	G	A	1185.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=11;ExcessHet=3.9794;FS=4.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.21;ReadPosRankSum=-8.840e-01;SOR=2.712;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:222,0,186
chr2	31467351	rs2295473	T	A	3779.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=63;ExcessHet=3.9794;FS=7.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=1.83;SOR=1.218;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,25:63:99:650,0,917
chr2	31483890	rs13028669	T	C	5933.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.517e+00;DB;DP=61;ExcessHet=3.0103;FS=1.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.23;ReadPosRankSum=1.73;SOR=0.408;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2108,183,0
chr2	31484334	rs654650	G	A	7049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=2.632;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2384,204,0
chr2	31488965	rs619002	C	T	3647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.77;SOR=2.728;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1400,126,0
chr2	31489627	rs36223800	T	TACACAC	1084.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=1.56;SOR=1.064;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,12:24:99:497,0,269
chr2	31489727	rs644926	T	C	1629.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=5.330;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:304,24,0
chr2	31565360	rs12614330	C	T	937.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.157e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=0.638;SOR=0.560;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:341,30,0
chr2	31567743	rs566224	T	C	7154.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.73;SOR=1.212;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2317,213,0
chr2	31567929	rs207455	G	A	876.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=6.273;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	31569374	rs7572658	C	G	775.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.26;SOR=5.892;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr2	31569471	rs7599175	A	G	3632.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=3.142;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:637,57,0
chr2	31570376	rs1366813	T	C	6919.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=1.830;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1947,183,0
chr2	31570626	rs4952083	C	T	3222.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.84;SOR=3.767;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:31570626_C_T:1170,78,0:31570626
chr2	31570631	rs4952084	A	G	3164.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=3.643;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:31570626_C_T:1170,78,0:31570626
chr2	31570689	rs4952085	G	A	1197.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.26;SOR=4.548;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr2	31571241	rs13415401	G	C	8335.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.75;SOR=1.102;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2366,222,0
chr2	31571786	rs1884725	A	G	7020.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=0.756;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2289,231,0
chr2	31572398	rs1429374	A	G	1587.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.40;DB;DP=16;ExcessHet=3.0103;FS=2.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=-2.050e-01;SOR=0.337;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:584,48,0
chr2	31572482	rs11408029	T	TG	5105.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.94;SOR=1.868;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1396,129,0
chr2	31573234	.	CTTT	C	329.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=2;ExcessHet=1.5490;FS=0.000;MQ=59.13;MQRankSum=0.674;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.59;SOR=3.258;VQSLOD=0.538;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,1:2:8:34,0,8
chr2	31587235	rs1018505	G	A	3104.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=48;ExcessHet=3.0103;FS=4.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-5.970e-01;SOR=1.244;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1424,143,0
chr2	31588288	rs2365842	T	A	7444.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=112;ExcessHet=3.0103;FS=1.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=-3.500e-01;SOR=0.832;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3446,336,0
chr2	31588561	rs1429376	A	C	1164.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.21;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.26;ReadPosRankSum=-2.500e-01;SOR=1.609;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:260,18,0
chr2	31588664	rs12621192	C	T	147.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=3.258;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr2	31589847	rs2295475	G	A	4456.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;DB;DP=116;ExcessHet=1.5490;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=1.19;SOR=0.639;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,114:116:99:3308,298,0
chr2	31590785	rs761926	C	G	2476.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.75;DB;DP=55;ExcessHet=1.5490;FS=0.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=-1.171e+00;SOR=0.570;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1746,165,0
chr2	31595424	rs10171290	T	C	797.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.84;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.60;ReadPosRankSum=-6.110e-01;SOR=1.162;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:715,54,0
chr2	31597940	rs28469567	A	G	208.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.33;SOR=1.981;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr2	31598485	rs2070294	T	C	834.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.017e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.826;SOR=1.609;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:538,45,0
chr2	31600146	rs10187719	T	C	2773.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=20;ExcessHet=3.0103;FS=2.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.02;ReadPosRankSum=2.08;SOR=1.880;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:832,60,0
chr2	31609448	rs477626	A	C	8302.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.57;SOR=0.847;VQSLOD=4.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2972,291,0
chr2	31611367	rs206847	T	C	905.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.166e+00;DB;DP=17;ExcessHet=3.9794;FS=2.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=0.00;SOR=0.197;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:586,51,0
chr2	31621598	rs10175754	T	C	2321.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=1.340;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2338,219,0
chr2	31626045	rs1346644	G	C	2195.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=2.551;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2212,206,0
chr2	31628705	rs1366814	T	G	2488.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.49;SOR=1.136;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2505,237,0
chr2	31628955	rs206802	C	G	227.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.54;SOR=3.912;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:244,18,0
chr2	31629030	rs206803	A	C	117.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=59.67;POSITIVE_TRAIN_SITE;QD=31.66;SOR=1.179;VQSLOD=5.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr2	31805619	rs619857	T	C	2410.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.79;SOR=2.303;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:626,45,0
chr2	31805675	rs522638	A	G	2718.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=35;ExcessHet=3.9794;FS=4.101;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-5.940e-01;SOR=1.191;VQSLOD=6.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,33:35:56:1145,56,0
chr2	31805706	rs523349	G	C	3385.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.308e+00;DB;DP=53;ExcessHet=3.9794;FS=4.198;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=-5.300e-01;SOR=1.110;VQSLOD=7.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,51:53:99:1584,110,0
chr2	31805880	rs142200057	A	AG	13371.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.18;SOR=0.928;VQSLOD=5.61;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,144:144:99:5124,436,0
chr2	31806031	rs632148	C	G	2288.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.146;DB;DP=39;ExcessHet=3.9794;FS=14.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=1.09;SOR=0.030;VQSLOD=12.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1288,117,0
chr2	31806130	rs60274949	G	GC	752.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.43;SOR=2.948;VQSLOD=5.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:485,36,0
chr2	32146160	rs56156729	C	T	1420.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.85;SOR=0.732;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1437,152,0
chr2	32264285	rs141121792	TC	T	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.245e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.68;ReadPosRankSum=0.704;SOR=0.527;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,12:18:99:0|1:32264285_TC_T:507,0,408:32264285
chr2	32264288	rs62142092	C	T	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.22;ReadPosRankSum=-1.465e+00;SOR=0.368;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,13:19:99:0|1:32264285_TC_T:507,0,408:32264285
chr2	32312700	rs7561519	T	C	1312.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851e+00;DB;DP=30;ExcessHet=6.9897;FS=2.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.329e+00;SOR=1.040;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:440,0,416
chr2	32312716	rs202142071	C	CTATT	275.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.53;ReadPosRankSum=0.105;SOR=1.609;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:99:284,0,105
chr2	32324072	rs7566162	T	C	814.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=1.40;SOR=0.404;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:199,0,298
chr2	32324135	rs7605242	G	A	296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-1.036e+00;SOR=0.602;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,103
chr2	32340026	rs11399176	A	ATT	243.99	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=0.00;SOR=3.767;VQSLOD=5.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr2	32369901	rs2365556	T	C	1152.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=2.694;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:434,36,0
chr2	32399053	rs138214491	G	A	894.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e-01;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-8.700e-02;SOR=0.570;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:903,0,884
chr2	32400532	rs28713298	T	C	333.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=18;ExcessHet=3.0103;FS=2.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=-8.470e-01;SOR=1.609;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:342,0,179
chr2	32400596	rs11895183	G	C	139.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-8.160e-01;SOR=0.693;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:148,0,118
chr2	32418729	rs11895623	A	G	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=0.895;SOR=1.609;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:351,0,127
chr2	32418808	rs212751	T	A	2917.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.77;DB;DP=50;ExcessHet=3.9794;FS=6.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=-4.480e-01;SOR=0.311;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1603,150,0
chr2	32422366	rs151324916	G	GT	421.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=32;ExcessHet=3.0103;FS=3.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.00;SOR=1.714;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,19:32:99:430,0,279
chr2	32434701	rs212685	A	G	1369.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.920e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=1.15;SOR=0.824;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:589,54,0
chr2	32460348	rs212714	A	G	1186.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e+00;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=0.064;SOR=0.844;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:78:345,0,78
chr2	32461493	rs55638726	T	TC	793.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=4.615;VQSLOD=6.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr2	32466029	rs212721	A	G	2053.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411e+00;DB;DP=62;ExcessHet=6.9897;FS=0.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.722;SOR=0.637;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,34:62:99:785,0,806
chr2	32466328	rs138857701	G	C	94.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.43;ReadPosRankSum=-5.360e-01;SOR=0.223;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:103,0,232
chr2	32475109	rs455060	G	A	4500.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074e+00;DB;DP=82;ExcessHet=6.9897;FS=2.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-5.290e-01;SOR=0.845;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,53:82:99:1406,0,765
chr2	32476390	rs408813	T	G	5381.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.96;DB;DP=141;ExcessHet=6.9897;FS=1.756;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.609;SOR=0.849;VQSLOD=5.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,58:141:99:1478,0,2138
chr2	32481793	rs11295492	AT	A	3020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DB;DP=59;ExcessHet=6.9897;FS=3.305;MQ=60.00;MQRankSum=0.00;QD=15.33;ReadPosRankSum=-1.690e-01;SOR=0.485;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,25:59:99:0|1:32481793_AT_A:947,0,1920:32481793
chr2	32481795	rs59966205	T	A	3020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=59;ExcessHet=6.9897;FS=3.293;MQ=60.00;MQRankSum=0.00;QD=15.41;ReadPosRankSum=0.137;SOR=0.497;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,25:59:99:0|1:32481793_AT_A:947,0,1920:32481793
chr2	32503526	rs398290	T	C	721.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.39;ReadPosRankSum=0.623;SOR=3.611;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	32515398	rs458628	G	A	397.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.41;ReadPosRankSum=-1.960e+00;SOR=2.303;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	32523030	rs36079020	C	CT	59.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:68:68,0,68
chr2	32620722	rs3731581	A	T	641.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.830e-01;DB;DP=62;ExcessHet=3.0103;FS=3.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-1.331e+00;SOR=0.349;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,28:62:99:650,0,914
chr2	32667058	rs55734616	C	A	2053.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.81;SOR=3.564;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:32667058_C_A:495,33,0:32667058
chr2	32667061	rs60955793	T	A	2053.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.29;SOR=3.516;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:32667058_C_A:495,33,0:32667058
chr2	32667182	rs60197615	G	C	5649.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=1.199;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1636,153,0
chr2	32688601	rs762019	A	C	534.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=0.967;SOR=3.912;VQSLOD=15.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:379,27,0
chr2	32697911	rs6543656	C	T	500.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=5.283;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	32706579	rs9646977	T	A	2420.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.77;QD=34.58;SOR=2.737;VQSLOD=4.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:711,60,0
chr2	32712875	rs2366891	A	C	6965.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=2.162;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1795,161,0
chr2	32713045	rs4524166	A	C	456.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.14;SOR=5.136;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr2	32713059	rs2366892	T	A	255.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.84;SOR=3.912;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:32713059_T_A:135,9,0:32713059
chr2	32713061	rs2366893	A	T	255.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.53;SOR=3.912;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:32713059_T_A:135,9,0:32713059
chr2	32713068	rs2886799	T	A	210.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.03;SOR=3.611;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:32713059_T_A:90,6,0:32713059
chr2	32713706	rs2366894	A	T	4413.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.384;DB;DP=59;ExcessHet=3.0103;FS=1.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=-2.112e+00;SOR=0.855;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1666,177,0
chr2	32718849	rs6543658	G	A	1628.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.03;ReadPosRankSum=-7.030e-01;SOR=4.615;VQSLOD=13.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:633,45,0
chr2	32733343	.	C	CTTTT	1158.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258e+00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=34.06;ReadPosRankSum=1.16;SOR=0.610;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:59:314,0,59
chr2	32735881	rs3731579	A	G	449.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=0.308;SOR=1.609;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:458,0,181
chr2	32740138	rs34757266	T	C	2541.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=0.839;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2558,257,0
chr2	32749880	rs2710609	C	T	2006.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.89;SOR=6.229;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:32749880_C_T:625,42,0:32749880
chr2	32749890	rs2710610	C	T	2236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.78;SOR=6.273;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:45:1|1:32749880_C_T:675,45,0:32749880
chr2	32749893	rs2710611	A	T	2326.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=5.630;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:32749880_C_T:675,45,0:32749880
chr2	32749903	rs2710612	T	C	2583.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.78;SOR=5.318;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:32749880_C_T:715,48,0:32749880
chr2	32757349	rs72800834	G	C	125.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039e+00;DB;DP=17;ExcessHet=3.0103;FS=2.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=-6.350e-01;SOR=0.160;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:134,0,301
chr2	32768140	rs2710631	A	T	487.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=2.303;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	32800422	rs35286811	C	G	256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.468e+00;DB;DP=17;ExcessHet=3.0103;FS=6.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-1.269e+00;SOR=0.061;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:265,0,264
chr2	32800522	rs72785601	T	C	63.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:72,0,66
chr2	32822729	rs2583713	A	G	827.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.66;ReadPosRankSum=0.880;SOR=1.179;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:307,21,0
chr2	32822957	rs2710625	G	A	4105.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.920;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=-9.710e-01;SOR=0.671;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1240,114,0
chr2	32855615	rs2710623	A	G	4622.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.02;SOR=1.431;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1519,129,0
chr2	32860415	rs11124286	C	T	4072.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=0.783;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1094,115,0
chr2	32865434	rs77321087	G	A	1851.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=169;ExcessHet=3.0103;FS=1.925;MQ=59.99;MQRankSum=0.938;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-1.628e+00;SOR=0.528;VQSLOD=1.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:91,78:169:99:1860,0,2158
chr2	32875084	rs34549288	T	C	620.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=3.500;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:637,54,0
chr2	32875420	.	CT	C	339.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.15;ReadPosRankSum=0.210;SOR=2.215;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:11:32,0,11
chr2	32892036	rs5830236	GT	G	444.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.81;SOR=4.174;VQSLOD=4.75;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:172,18,0
chr2	32928119	rs7586406	A	G	1538.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=2.160;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1555,141,0
chr2	32959024	rs1551177	T	C	7130.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=99;ExcessHet=3.9794;FS=1.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=-2.730e-01;SOR=0.604;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,52:99:99:1371,0,1185
chr2	32961540	rs12624166	A	G	924.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=0.366;SOR=4.892;VQSLOD=6.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	32961745	rs10200333	T	A	10867.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.371;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3371,320,0
chr2	32961858	rs2273660	A	G	6000.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=173;ExcessHet=6.9897;FS=2.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.038;SOR=0.875;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,82:173:99:2037,0,2135
chr2	32962066	rs2273661	T	C	735.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=0.204;SOR=0.869;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:128,0,384
chr2	32983299	rs71407470	TA	T	209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.44;ReadPosRankSum=0.080;SOR=0.368;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,9:12:48:218,0,48
chr2	32991453	rs79420221	T	C	255.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-02;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.51;ReadPosRankSum=1.86;SOR=0.741;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:264,0,484
chr2	33002739	rs1022719	T	G	99.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=2.833;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr2	33004907	rs34397390	G	GTCC	177.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.900e-02;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.281;SOR=0.368;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:186,0,397
chr2	33005238	rs6729463	T	C	320.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010e-01;DB;DP=23;ExcessHet=3.0103;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=1.69;SOR=1.445;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:329,0,301
chr2	33007817	rs6738232	T	C	320.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e+00;DB;DP=26;ExcessHet=3.0103;FS=10.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-5.400e-01;SOR=0.027;VQSLOD=18.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:329,0,504
chr2	33036324	rs3731578	G	A	1216.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.652;DB;DP=22;ExcessHet=1.5490;FS=5.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.96;ReadPosRankSum=1.20;SOR=0.172;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:709,66,0
chr2	33037217	rs927088	G	A	284.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.29;SOR=4.407;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
chr2	33037244	rs927089	C	G	390.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=4.977;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:145,12,0
chr2	33045732	rs6543677	T	C	107.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.52;SOR=2.833;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	33127080	rs6716986	T	C	1211.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=99;ExcessHet=3.0103;FS=2.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.44;SOR=1.041;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,43:99:99:1220,0,1524
chr2	33127244	rs11417708	C	CT	4834.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=1.169;VQSLOD=4.75;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,120:120:99:4851,364,0
chr2	33150278	rs148049664	GA	G	84.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.220e-01;DB;DP=19;ExcessHet=6.9897;FS=1.568;MQ=59.89;MQRankSum=0.00;QD=1.13;ReadPosRankSum=-1.052e+00;SOR=0.330;VQSLOD=4.92;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,4:19:48:48,0,319
chr2	33150389	rs10865091	C	T	5153.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;DB;DP=87;ExcessHet=1.5490;FS=0.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=0.760;SOR=0.781;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,37:87:99:908,0,1320
chr2	33150678	rs897507	C	T	3271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;DB;DP=155;ExcessHet=3.9794;FS=3.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-5.440e-01;SOR=0.933;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,65:155:99:1772,0,2462
chr2	33150720	rs897508	A	G	3855.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=109;ExcessHet=1.5490;FS=8.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=-1.318e+00;SOR=1.288;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,43:109:99:1215,0,1732
chr2	33172358	rs78055007	C	A	93.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.33;ReadPosRankSum=1.72;SOR=1.609;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:102,0,110
chr2	33173552	rs6745339	C	T	189.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.55;ReadPosRankSum=0.210;SOR=2.303;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:24:198,0,24
chr2	33173703	rs4952319	G	A	761.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065e+00;DB;DP=48;ExcessHet=3.0103;FS=4.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=0.718;SOR=0.268;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,29:48:99:770,0,490
chr2	33174072	rs150654	A	C	1723.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DB;DP=42;ExcessHet=1.5490;FS=1.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.30;ReadPosRankSum=-1.289e+00;SOR=0.513;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:536,0,688
chr2	33246491	rs219195	A	G	729.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.18;ReadPosRankSum=-7.120e-01;SOR=2.215;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr2	33335847	rs218226	C	T	15992.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.959e+00;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.99;ReadPosRankSum=0.262;SOR=0.396;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,151:152:99:4530,410,0
chr2	33360185	rs1545551	T	C	135.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=3.258;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr2	33392911	rs6728094	G	A	4497.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=87;ExcessHet=3.9794;FS=1.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=0.610;SOR=0.786;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,35:87:99:777,0,1354
chr2	33407186	rs6759943	T	C	2136.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;DB;DP=26;ExcessHet=3.9794;FS=4.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=0.026;SOR=1.973;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:397,0,344
chr2	33407285	rs2367619	G	A	4933.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.090e-01;DB;DP=84;ExcessHet=3.9794;FS=3.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=-1.750e-01;SOR=0.509;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1130,0,979
chr2	33407502	rs2367620	G	A	1330.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.32;ReadPosRankSum=0.469;SOR=1.519;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:98:231,0,98
chr2	33412077	rs1065324	G	A	4935.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=82;ExcessHet=3.9794;FS=3.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=2.51;SOR=0.510;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1015,0,1008
chr2	33412342	rs6707911	G	A	178	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.67;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:71,0,32
chr2	33413640	rs6712473	G	T	1945.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.650e-01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=0.522;SOR=0.713;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:529,0,354
chr2	33413949	rs4542826	G	A	2253.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=29;ExcessHet=3.9794;FS=6.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=-3.890e-01;SOR=0.247;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:509,0,258
chr2	33414009	rs3922572	T	A	1064.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.889;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-1.279e+00;SOR=1.519;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:219,24,0
chr2	33442549	rs2290449	G	A	4903.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DB;DP=80;ExcessHet=3.9794;FS=4.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=0.863;SOR=0.820;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1187,0,1003
chr2	33447023	rs7608535	G	A	1168.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=0.387;SOR=1.659;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,158
chr2	33447202	rs2290448	C	T	6840.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DB;DP=120;ExcessHet=3.9794;FS=0.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.623;SOR=0.729;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,63:120:99:1652,0,1390
chr2	33525366	rs115582857	C	T	717.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999e+00;DB;DP=16;ExcessHet=3.9794;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=-5.700e-02;SOR=2.226;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:384,0,158
chr2	33525382	rs935996	A	C	1148.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.040e+00;DB;DP=20;ExcessHet=1.5490;FS=3.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.810;SOR=2.093;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:775,60,0
chr2	33526382	rs6735659	T	G	139.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=-1.834e+00;SOR=0.693;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr2	33540138	rs2276591	G	A	1923.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.493e+00;DB;DP=16;ExcessHet=3.0103;FS=4.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.15;ReadPosRankSum=-9.900e-02;SOR=2.015;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:533,48,0
chr2	33540172	rs3216704	A	AT	1526.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.834e+00;DB;DP=30;ExcessHet=1.5490;FS=3.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-2.786e+00;SOR=0.276;VQSLOD=5.70;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,30:30:90:913,90,0
chr2	33540248	rs1058840	G	A	6483.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=69;ExcessHet=3.0103;FS=8.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=-1.350e-01;SOR=1.160;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2127,206,0
chr2	33568113	rs10185623	A	G	2203.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.920e-01;DB;DP=71;ExcessHet=3.9794;FS=1.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=-1.470e-01;SOR=0.910;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,37:71:99:973,0,887
chr2	33568137	rs5024713	G	A	2696.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.360e-01;DB;DP=40;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=-9.150e-01;SOR=0.830;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1652,126,0
chr2	33568191	rs5024712	T	C	713.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.833e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=0.356;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:485,42,0
chr2	33585796	rs4422143	T	C	17805.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=0.707;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5439,542,0
chr2	33586180	rs12999028	C	T	606.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.90;SOR=4.047;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr2	33586464	rs11442294	C	CT	925.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=20;ExcessHet=3.9794;FS=2.896;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.610;SOR=1.270;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,11:20:90:240,0,90
chr2	33614187	rs642472	C	T	3055.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.775e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.26;ReadPosRankSum=-5.280e-01;SOR=0.922;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1104,101,0
chr2	33623288	rs626121	T	C	1204.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.240e-01;DB;DP=23;ExcessHet=6.9897;FS=1.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-5.670e-01;SOR=0.375;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:414,0,301
chr2	33623387	rs624060	A	G	6125.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=81;ExcessHet=6.9897;FS=0.469;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=-2.900e-02;SOR=0.760;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,46:81:99:0|1:33623387_A_G:1834,0,2117:33623387
chr2	33623388	rs624058	T	C	6125.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=82;ExcessHet=6.9897;FS=0.464;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=-1.590e-01;SOR=0.737;VQSLOD=6.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,47:82:99:0|1:33623387_A_G:1834,0,2117:33623387
chr2	33623673	rs41291169	T	C	180.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461e+00;DB;DP=21;ExcessHet=3.0103;FS=2.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=0.942;SOR=0.293;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:189,0,393
chr2	33623734	rs622716	A	G	432.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.879;SOR=0.518;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:102,0,106
chr2	33643734	.	AT	A	161.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.01;ReadPosRankSum=1.73;SOR=0.525;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:14:62:81,0,62
chr2	33744958	rs7597095	C	T	740.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.720e-01;DB;DP=24;ExcessHet=6.9897;FS=1.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=0.644;SOR=0.932;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:128,0,462
chr2	33745208	rs2305576	T	C	2389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.860e-01;DB;DP=56;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.150e-01;SOR=0.660;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,28:56:99:608,0,637
chr2	33745292	rs149997838	G	A	514.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=26;ExcessHet=3.0103;FS=1.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=1.03;SOR=1.112;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:523,0,273
chr2	33745336	rs2305575	T	C	1930.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.63;DB;DP=20;ExcessHet=3.9794;FS=3.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.76;ReadPosRankSum=1.29;SOR=0.752;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:833,60,0
chr2	33745402	rs2305574	A	G	1251.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.208;SOR=0.627;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,9:32:99:261,0,811
chr2	33747285	rs2305573	G	A	255.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=0.652;SOR=0.495;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:114,0,28
chr2	33748838	rs2305571	A	G	690.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=0.298;SOR=0.804;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:305,0,175
chr2	33764286	rs7592762	T	C	1901.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;DB;DP=52;ExcessHet=6.9897;FS=1.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.028;SOR=0.798;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,22:52:99:594,0,722
chr2	33768834	rs114845896	T	A	104.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:113,0,69
chr2	33784161	rs2278955	G	A	2617.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=63;ExcessHet=6.9897;FS=2.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.082;SOR=0.613;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,32:63:99:771,0,783
chr2	33784500	rs2278956	G	A	419.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.542e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-1.250e-01;SOR=0.393;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,317
chr2	33787976	rs10572554	CCTAA	C	3892.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.31;SOR=3.391;VQSLOD=6.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,25:25:76:1126,76,0
chr2	33788060	rs147743629	CTT	C	914.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=0.175;SOR=1.911;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:147,0,146
chr2	33820386	rs142035383	C	T	59.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-5.240e-01;SOR=0.061;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,102
chr2	33952022	rs4670913	C	A	1498.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.540e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=-3.010e-01;SOR=0.514;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:275,0,229
chr2	33952055	rs2290101	C	G	2124.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=0.474;SOR=0.979;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:717,0,723
chr2	33952413	rs4477896	T	C	15907.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.66;DB;DP=307;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-2.050e-01;SOR=0.724;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:164,143:307:99:3579,0,3851
chr2	33952456	rs2367810	C	G	28701.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=331;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.64;SOR=0.847;VQSLOD=2.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,331:331:99:9944,991,0
chr2	33952995	rs77056394	C	G	371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.691e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.81;MQRankSum=-7.140e-01;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-1.353e+00;SOR=0.368;VQSLOD=1.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,12:20:99:380,0,285
chr2	33953013	rs78054170	G	T	386.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.538e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.78;MQRankSum=-6.840e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=-1.908e+00;SOR=1.179;VQSLOD=0.722;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,11:18:99:395,0,247
chr2	35696519	rs62143301	G	A	567.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338e+00;DB;DP=54;ExcessHet=3.0103;FS=6.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=1.23;SOR=0.211;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:576,0,710
chr2	35696612	rs4670472	C	T	7461.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=0.989;VQSLOD=19.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1954,200,0
chr2	36583342	rs201258494	T	TGCG	234.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.04;ReadPosRankSum=-1.242e+00;SOR=1.609;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:99:243,0,117
chr2	36605585	rs4670548	A	G	3578.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=48;ExcessHet=3.9794;FS=0.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=0.967;SOR=0.779;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:775,0,587
chr2	36605676	rs60204094	A	AT	288.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.10;ReadPosRankSum=0.709;SOR=1.085;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:89:89,0,89
chr2	36668395	rs2276673	T	A	4941.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.912e+00;DB;DP=105;ExcessHet=1.5490;FS=1.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=0.481;SOR=0.589;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3199,312,0
chr2	36668846	rs3770885	G	A	788.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.499e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=-4.130e-01;SOR=0.743;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:458,45,0
chr2	36669645	rs17018798	T	C	5096.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=105;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=-1.600e-02;SOR=0.673;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3634,315,0
chr2	36669670	rs3821157	C	A	5579.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;DB;DP=129;ExcessHet=1.5490;FS=0.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=-3.790e-01;SOR=0.759;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3957,385,0
chr2	36691951	rs711252	A	C	998.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.814e+00;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=1.11;SOR=0.459;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:785,63,0
chr2	36704144	rs848547	C	T	3045.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.710e-01;DB;DP=74;ExcessHet=1.5490;FS=2.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=-1.500e-02;SOR=0.461;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2073,220,0
chr2	36706421	rs711251	C	G	459.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=0.674;SOR=1.739;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:204,0,23
chr2	36706511	rs711250	G	C	868.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.89;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=0.561;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:523,0,365
chr2	36739553	rs848526	T	C	2330.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.112;DB;DP=23;ExcessHet=3.0103;FS=7.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.08;ReadPosRankSum=-2.384e+00;SOR=2.331;VQSLOD=19.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:833,69,0
chr2	36756288	rs711247	T	C	4219.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.690e-01;DB;DP=64;ExcessHet=3.0103;FS=0.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=-6.500e-01;SOR=0.864;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1854,192,0
chr2	36758856	rs1017153	T	G	83.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=0.135;SOR=0.307;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:92:92,0,138
chr2	36775315	rs2270333	C	G	1312.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=-7.800e-01;SOR=0.925;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:333,0,452
chr2	36775410	.	CTT	C	1517.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e-01;DP=53;ExcessHet=3.9794;FS=1.354;MQ=59.65;MQRankSum=-2.950e-01;QD=10.84;ReadPosRankSum=0.041;SOR=0.566;VQSLOD=0.621;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,26:53:99:859,0,464
chr2	36779144	rs10180760	T	G	1452.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=40;ExcessHet=1.5490;FS=5.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=-1.179e+00;SOR=1.650;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:559,0,539
chr2	36781401	rs1533946	T	C	2103.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DB;DP=61;ExcessHet=1.5490;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.974;SOR=0.453;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:721,0,706
chr2	36782656	rs10178965	G	A	2521.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.912e+00;DB;DP=40;ExcessHet=1.5490;FS=2.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=1.08;SOR=0.388;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:472,0,678
chr2	36783127	rs10194100	T	C	1727.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=-4.040e-01;SOR=0.728;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,14:35:99:406,0,597
chr2	36783215	rs10181664	C	T	2115.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670e-01;DB;DP=56;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=1.40;SOR=0.636;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,22:56:99:514,0,955
chr2	36785398	rs10178002	A	G	1277.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.63;ReadPosRankSum=0.923;SOR=3.258;VQSLOD=18.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:354,0,204
chr2	36805676	rs2075226	A	G	2738.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=49;ExcessHet=1.5490;FS=2.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=0.784;SOR=1.013;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,27:49:99:726,0,459
chr2	36806021	rs2072534	G	A	2053.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.770e-01;DB;DP=34;ExcessHet=1.5490;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=1.59;SOR=1.218;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,22:34:99:610,0,286
chr2	36806051	rs2072533	A	G	1552.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DB;DP=23;ExcessHet=1.5490;FS=2.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.76;ReadPosRankSum=-1.771e+00;SOR=1.781;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,16:23:99:448,0,144
chr2	36808350	rs848638	C	T	2331.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.690e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.80;ReadPosRankSum=0.798;SOR=0.746;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:357,0,270
chr2	36808732	rs848637	T	G	2897.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e-01;DB;DP=41;ExcessHet=3.9794;FS=3.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=0.385;SOR=1.034;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:601,0,373
chr2	36808905	rs3770788	T	C	238.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=0.674;SOR=1.863;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:76,0,66
chr2	36810473	rs11691767	G	T	4524.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=116;ExcessHet=1.5490;FS=1.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=1.21;SOR=0.554;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,59:116:99:1489,0,1427
chr2	36810586	rs14291	T	C	2908.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.711e+00;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=1.40;SOR=0.764;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,30:55:99:741,0,691
chr2	36824956	rs5830430	G	GC	1441.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.51;SOR=1.387;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:335,27,0
chr2	36825137	rs1544655	G	A	806.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=31;ExcessHet=3.9794;FS=9.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.360;SOR=1.594;VQSLOD=19.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,10:31:99:225,0,493
chr2	36825170	rs2287104	T	C	483.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=23;ExcessHet=3.9794;FS=1.092;MQ=60.00;MQRankSum=0.00;QD=8.06;ReadPosRankSum=-1.626e+00;SOR=0.877;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,7:23:99:172,0,368
chr2	36825330	rs11441122	C	CG	1197.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=2.833;VQSLOD=4.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:630,51,0
chr2	36943338	rs4670597	C	G	2445.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=4.139;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:783,60,0
chr2	36943419	rs4670598	T	C	6579.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=1.550;VQSLOD=18.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1922,174,0
chr2	36965582	rs35608380	TC	T	408.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=1.24;SOR=0.352;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:50:199,0,50
chr2	36981918	rs2072524	G	C	398.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.68;ReadPosRankSum=0.319;SOR=1.473;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:75,0,36
chr2	36986549	rs10179289	A	G	144.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=3.258;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	36994439	rs11124542	A	C	1958.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.520e-01;DB;DP=33;ExcessHet=3.9794;FS=4.101;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=-5.110e-01;SOR=1.424;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,12:33:99:354,0,628
chr2	37000877	rs116154541	A	T	35.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=17.84;SOR=0.693;VQSLOD=14.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	37001570	rs974964	C	T	2533.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.24;SOR=2.082;VQSLOD=19.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:558,48,0
chr2	37010574	rs3821147	G	A	2531.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DB;DP=86;ExcessHet=3.9794;FS=5.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.972;SOR=0.939;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1053,0,1017
chr2	37028115	rs763724	G	A	108.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:70,0,36
chr2	37041480	rs17441812	G	A	2029.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DB;DP=154;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-2.470e-01;SOR=0.715;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,86:154:99:2038,0,1508
chr2	37077015	rs723674	C	A	886.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.88;SOR=6.273;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:363,27,0
chr2	37078095	rs10668550	A	AT,ATT	1766.75	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.410e-01;DB;DP=16;ExcessHet=3.0103;FS=3.588;MQ=60.00;MQRankSum=0.00;QD=27.61;ReadPosRankSum=1.47;SOR=2.392;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,7,8:16:99:400,180,161,136,0,144
chr2	37082695	rs998321	C	T	469.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=5.136;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr2	37088083	rs2540935	C	T	355.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.21;SOR=4.804;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	37094945	rs2540923	A	G	5314.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=1.127;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1231,129,0
chr2	37095139	rs6752845	G	C	1477.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=3.000e-03;SOR=2.352;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:232,0,181
chr2	37096970	rs2160379	C	T	848.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.15;SOR=4.804;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr2	37097009	rs2110942	T	C	281.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=0.00;SOR=3.056;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:68,0,33
chr2	37111045	rs2691106	T	A	447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065e+00;DB;DP=28;ExcessHet=3.0103;FS=6.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=-1.720e-01;SOR=0.157;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:456,0,202
chr2	37114185	rs111790959	GACACACACACAC	G	212.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.17;SOR=1.981;VQSLOD=5.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr2	37129618	rs10669391	A	ATAAT	742.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=5.549;VQSLOD=6.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:12:180,12,0
chr2	37230888	rs2706811	A	G	696.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=19;ExcessHet=6.9897;FS=4.477;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-3.720e-01;SOR=0.264;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:171,0,294
chr2	37232927	rs139942041	GT	G	1938.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=40;ExcessHet=3.9794;FS=0.939;MQ=60.00;MQRankSum=0.00;QD=19.19;ReadPosRankSum=0.630;SOR=0.547;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,17:40:99:0|1:37232927_GT_G:645,0,1293:37232927
chr2	37232929	rs369798714	T	G	1938.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076e+00;DB;DP=39;ExcessHet=3.9794;FS=0.932;MQ=60.00;MQRankSum=0.00;QD=19.38;ReadPosRankSum=0.482;SOR=0.569;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,17:39:99:0|1:37232927_GT_G:645,0,1293:37232927
chr2	37240800	rs2541000	T	G	564.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=0.298;SOR=0.818;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:150,0,137
chr2	37246738	rs72873859	T	G	500.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=0.385;SOR=0.399;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:48:48,0,270
chr2	37255015	rs2540998	G	A	1410.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.890e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=-5.890e-01;SOR=0.941;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,1:9:50:50,0,286
chr2	37259640	rs9309001	G	T	904.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.679e+00;DB;DP=20;ExcessHet=6.9897;FS=5.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.618;SOR=2.395;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:425,0,235
chr2	37276651	rs10495870	A	C	440.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.45;ReadPosRankSum=0.00;SOR=2.985;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:105,0,71
chr2	37302556	rs34545380	GA	G	4101.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.94;SOR=2.734;VQSLOD=5.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1531,153,0
chr2	37306343	rs6743906	G	A	5456.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=29.98;SOR=0.715;VQSLOD=4.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1785,180,0
chr2	37316717	.	T	TA	81.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.09;ReadPosRankSum=0.00;SOR=0.207;VQSLOD=5.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,3:6:56:56,0,56
chr2	37317248	rs17505250	A	G	135.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=-9.670e-01;SOR=0.941;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:74,0,31
chr2	37317869	rs4670654	C	T	5451.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.84;SOR=0.846;VQSLOD=4.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1441,137,0
chr2	37318041	rs4670655	A	G	1230.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.604;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.19;ReadPosRankSum=0.261;SOR=1.662;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:542,39,0
chr2	37323427	rs56020915	A	G	1511.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=47;ExcessHet=3.9794;FS=4.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=1.07;SOR=1.273;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:484,0,838
chr2	37342357	.	GT	G	42.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DP=7;ExcessHet=3.0103;FS=0.000;MQ=55.70;MQRankSum=-1.800e-01;QD=7.11;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=0.431;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:7:51:51,0,90
chr2	37342367	rs13411658	T	G	41.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=55.50;MQRankSum=-4.000e-02;NEGATIVE_TRAIN_SITE;QD=2.43;ReadPosRankSum=0.464;SOR=0.293;VQSLOD=-3.304e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:18:18,0,151
chr2	37342456	rs4648231	T	C	6026.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=31.39;SOR=1.197;VQSLOD=4.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2130,204,0
chr2	37368452	rs2287350	T	C	220.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=3.912;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	37373982	rs2307475	A	AT	9473.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.43;SOR=1.362;VQSLOD=5.17;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2933,220,0
chr2	37402270	rs11569755	C	G	1215.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=43;ExcessHet=6.9897;FS=1.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-9.350e-01;SOR=0.505;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,15:43:99:381,0,768
chr2	37402373	rs11569758	A	G	1597.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.050e-01;DB;DP=45;ExcessHet=6.9897;FS=0.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=0.301;SOR=0.591;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:500,0,683
chr2	37410357	rs6544060	T	C	140.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.15;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	37410537	rs6544061	C	T	2202.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524e+00;DB;DP=56;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-8.900e-01;SOR=0.646;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,25:56:99:639,0,843
chr2	37414431	rs6724820	A	C	2012.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=41;ExcessHet=6.9897;FS=0.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.374;SOR=0.751;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:576,0,583
chr2	37415496	rs11124566	G	C	1932.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.418e+00;DB;DP=19;ExcessHet=1.5490;FS=4.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=-1.492e+00;SOR=0.207;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:397,0,203
chr2	37428743	rs2540973	C	T	1015.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DB;DP=9;ExcessHet=3.9794;FS=1.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=0.869;SOR=0.433;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:139,0,146
chr2	37438993	rs1137437	G	A	1501.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=51;ExcessHet=3.9794;FS=1.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.530;SOR=0.459;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,28:51:99:758,0,613
chr2	37447471	.	AAT	A	51.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.19;ReadPosRankSum=0.967;SOR=0.105;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:24:59,0,24
chr2	37456032	rs2098386	C	T	8874.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;DB;DP=113;ExcessHet=3.9794;FS=2.931;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=0.678;SOR=0.496;VQSLOD=7.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,62:113:99:1665,0,1326
chr2	37458711	rs3213745	G	A	4862.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.990e-01;DB;DP=201;ExcessHet=3.9794;FS=2.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.275;SOR=0.836;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,108:201:99:2611,0,2398
chr2	37486527	rs2714470	A	G	827.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-3.290e-01;SOR=1.352;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:118,0,32
chr2	37499289	rs11124574	T	C	206.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:101,0,66
chr2	37518045	rs10177176	G	C	3142.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090e-01;DB;DP=90;ExcessHet=3.9794;FS=5.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.987;SOR=0.437;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,48:90:99:1161,0,1009
chr2	37520079	rs11683872	G	T	251.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=1.96;SOR=1.022;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:95:111,0,95
chr2	37571752	rs6761908	G	A	2959.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.06;SOR=4.698;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1028,81,0
chr2	38178362	rs2197561	T	C	1296.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.221e+00;DB;DP=16;ExcessHet=1.5490;FS=1.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=-7.820e-01;SOR=0.495;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:592,48,0
chr2	38179134	rs4670800	G	A	11602.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.93;SOR=0.843;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3280,294,0
chr2	38179373	rs77173073	A	G	2377.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.71;SOR=0.968;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2394,240,0
chr2	38202502	rs2044447	A	G	1317.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;DB;DP=30;ExcessHet=1.5490;FS=1.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.61;ReadPosRankSum=-1.900e-01;SOR=0.984;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1075,90,0
chr2	38208233	rs1446297	T	C	2213.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.72;SOR=4.731;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1009,75,0
chr2	38216416	rs1446296	T	G	443.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.83;SOR=4.977;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr2	38216478	rs6736956	T	C	393.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=0.319;SOR=3.611;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr2	38244818	rs11901988	A	C	2389.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.57;SOR=1.101;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,56:56:99:1|1:38244818_A_C:2406,169,0:38244818
chr2	38244824	rs11891536	G	A	2315.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=1.244;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:38244818_A_C:2332,160,0:38244818
chr2	38297654	rs4646431	C	CA	47.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.79;SOR=2.303;VQSLOD=5.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr2	38298139	rs1800440	T	C	2345.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.03;SOR=0.721;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2362,213,0
chr2	38298150	rs1056837	A	G	3449.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.840e-01;DB;DP=80;ExcessHet=1.5490;FS=1.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=-7.860e-01;SOR=0.782;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2490,240,0
chr2	38298203	rs1056836	C	G	3681.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.461;DB;DP=80;ExcessHet=1.5490;FS=2.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.16;ReadPosRankSum=1.85;SOR=0.986;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2623,240,0
chr2	38526324	rs3816370	A	T	60.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=20.25;SOR=1.179;VQSLOD=15.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:76,9,0
chr2	38526547	rs3765052	G	A	673.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=1.828;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:689,63,0
chr2	38536626	rs2305243	T	G	2137.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.97;SOR=1.131;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2154,207,0
chr2	38537626	rs2305245	A	C	1562.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.29;SOR=2.147;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1579,129,0
chr2	38541581	rs71400348	C	CTAT	523.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=3.442;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:36:540,36,0
chr2	38542573	rs12712583	T	C	2028.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.37;SOR=2.342;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2045,176,0
chr2	38604351	rs3731847	A	G	6528.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=0.956;VQSLOD=19.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,220:220:99:6545,659,0
chr2	38793110	rs144643949	G	GT	301.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DB;DP=29;ExcessHet=3.0103;FS=1.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-8.800e-02;SOR=0.446;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,13:29:99:310,0,370
chr2	38797196	rs145942144	T	TG	70.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.39;ReadPosRankSum=0.285;SOR=0.180;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,3:11:79:79,0,266
chr2	38916906	rs11687518	T	C	2288.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=48;ExcessHet=6.9897;FS=1.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-3.390e-01;SOR=0.836;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,25:48:99:650,0,692
chr2	38925708	rs13413726	G	T	166.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=0.303;SOR=0.693;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:175,0,179
chr2	38956947	rs2272445	A	G	3432.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248e+00;DB;DP=93;ExcessHet=6.9897;FS=1.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-2.350e-01;SOR=0.611;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,49:93:99:1262,0,1181
chr2	38957055	rs3097715	T	C	2851.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=2.196;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:939,90,0
chr2	38960927	rs3731838	G	A	188.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=6.9897;FS=2.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=0.431;SOR=1.536;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:104,0,107
chr2	38977371	rs3112183	C	T	2040.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=17;ExcessHet=6.9897;FS=2.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=1.08;SOR=0.970;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:336,0,175
chr2	38977402	rs3134630	T	C	1563.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.729;SOR=0.650;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:227,0,131
chr2	38977505	rs3134629	T	C	344.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.570;SOR=0.193;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:68,0,33
chr2	39006603	rs3112201	T	G	4746.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.093;DB;DP=57;ExcessHet=3.0103;FS=0.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=0.926;SOR=0.586;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1720,171,0
chr2	39008468	rs1562855	C	T	739.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=12;ExcessHet=6.9897;FS=9.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=0.819;SOR=0.049;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:285,0,117
chr2	39025043	rs34252629	G	GA	208.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-1.350e-01;SOR=2.147;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:19:109,0,19
chr2	39025555	rs1530853	G	A	4321.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DB;DP=99;ExcessHet=6.9897;FS=3.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-3.520e-01;SOR=0.536;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,55:99:99:1353,0,1022
chr2	39025632	rs1530852	A	G	2826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698e+00;DB;DP=51;ExcessHet=6.9897;FS=5.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.227;SOR=0.343;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,33:51:99:877,0,473
chr2	39030074	rs13029406	C	T	1650.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080e-01;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.027;SOR=0.674;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,16:45:99:376,0,743
chr2	39033590	rs3099968	T	C	1014.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.50;ReadPosRankSum=0.902;SOR=0.609;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:380,0,240
chr2	39034007	rs34006142	CT	C	36.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=18.21;SOR=2.303;VQSLOD=1.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	39040845	rs7419838	G	A	507.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.47;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=1.14;SOR=1.022;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:193,0,372
chr2	39042496	rs10865144	C	T	244.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=-1.718e+00;SOR=0.169;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:50:50,0,343
chr2	39042639	rs3112138	G	A	4432.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.972e+00;DB;DP=49;ExcessHet=3.0103;FS=0.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=-8.900e-01;SOR=0.621;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1500,146,0
chr2	39045885	rs10176932	C	T	872.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770e-01;DB;DP=10;ExcessHet=6.9897;FS=1.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-5.440e-01;SOR=0.458;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:110,0,140
chr2	39050019	rs3112146	G	T	2267.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.210e-01;DB;DP=21;ExcessHet=3.0103;FS=1.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=1.18;SOR=1.136;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:739,63,0
chr2	39050061	rs34582261	AT	A	3495.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.670e-01;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.63;ReadPosRankSum=-1.878e+00;SOR=0.784;VQSLOD=6.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1228,105,0
chr2	39050141	rs3770681	A	C	2585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DB;DP=56;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=1.29;SOR=0.718;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:831,0,663
chr2	39053545	rs7589162	G	C	832.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=0.275;SOR=1.151;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:195,0,252
chr2	39054048	rs3099980	G	A	218.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-4.140e-01;SOR=0.321;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:90:90,0,189
chr2	39055262	rs3099984	A	T	191.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118e+00;DB;DP=11;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;QD=12.74;ReadPosRankSum=1.50;SOR=0.141;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:93:93,0,208
chr2	39065729	rs17494315	C	A	1041.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=19;ExcessHet=6.9897;FS=1.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.356;SOR=0.402;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:358,0,254
chr2	39075356	rs11124651	A	C	647.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=1.11;SOR=1.460;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:25:177,0,25
chr2	39082344	rs7598922	T	C	5029.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=136;ExcessHet=6.9897;FS=3.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-8.680e-01;SOR=0.953;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,63:136:99:1568,0,1689
chr2	39082579	rs140617722	CCAATCAAAAGGA	C	394.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.90;ReadPosRankSum=-6.740e-01;SOR=2.670;VQSLOD=6.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:99:202,0,122
chr2	39083645	.	CTT	C	246.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110e-01;DP=7;ExcessHet=1.5490;FS=8.602;MQ=59.82;MQRankSum=0.00;QD=10.72;ReadPosRankSum=0.215;SOR=3.003;VQSLOD=2.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,3:7:60:60,0,63
chr2	39083812	rs3099998	T	G	95.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-5.240e-01;SOR=2.093;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
chr2	39084292	rs1131752	A	G	1072.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=40;ExcessHet=3.9794;FS=0.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=1.11;SOR=0.567;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:430,0,560
chr2	39084607	rs12373604	C	G	306.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.949;SOR=0.804;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	39085573	rs10573961	CTG	C	323.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-1.790e-01;SOR=0.919;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:41:81,0,41
chr2	39090696	rs3099999	T	C	6572.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=2.341;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2211,198,0
chr2	39090828	rs3100000	C	G	293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=1.01;SOR=0.275;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:213,0,105
chr2	39108387	rs3099947	A	G	889.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.78;ReadPosRankSum=0.618;SOR=2.468;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr2	39108773	rs3099948	A	G	1433.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.830e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=-9.500e-01;SOR=0.608;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:438,0,183
chr2	39109393	rs3099949	T	G	205.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.67;ReadPosRankSum=2.10;SOR=0.399;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:97:111,0,97
chr2	39109558	rs3099950	G	A	1147.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-02;DB;DP=41;ExcessHet=3.9794;FS=3.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.701;SOR=1.117;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,14:41:99:317,0,729
chr2	39117117	rs7565111	G	A	3079.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DB;DP=68;ExcessHet=6.9897;FS=5.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-2.240e-01;SOR=0.763;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,35:68:99:935,0,897
chr2	39117285	rs3112175	T	G	823.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=-4.270e-01;SOR=0.586;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:385,0,319
chr2	39162785	rs5830547	CT	C	1429.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e-01;DB;DP=57;ExcessHet=3.9794;FS=10.338;MQ=60.00;MQRankSum=0.00;QD=11.91;ReadPosRankSum=0.524;SOR=0.209;VQSLOD=2.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,33:57:99:835,0,560
chr2	39163209	rs390008	T	C	214.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=0.545;SOR=0.569;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,114
chr2	39170932	rs11323587	GT	G	566.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.180;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=1.01;SOR=2.066;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:172,18,0
chr2	39180129	rs2603144	C	T	436.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=4.977;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr2	39181774	.	CTTT	C,CTT	252.41	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=7;ExcessHet=0.4576;FS=0.000;MQ=59.30;POSITIVE_TRAIN_SITE;QD=28.05;SOR=4.977;VQSLOD=6.53;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,3,2:7:51:185,51,51,108,0,89
chr2	39184964	rs10865145	A	G	569.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-1.116e+00;SOR=0.468;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:95:321,0,95
chr2	39185048	rs422854	C	T	5576.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.39;SOR=1.920;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1337,111,0
chr2	39187190	rs6755527	T	C	23486.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=1.043;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,196:196:99:6852,589,0
chr2	39187519	rs958412	A	G	8077.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.57;SOR=2.347;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2358,198,0
chr2	39198966	rs2305516	A	G	4586.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=2.063;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1180,108,0
chr2	39199271	rs4670901	T	C	1564.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=4.804;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:559,48,0
chr2	39214821	rs2290445	A	C	1249.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.80;SOR=3.407;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:526,39,0
chr2	39224351	rs1454223	G	T	4040.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.85;SOR=3.892;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1246,99,0
chr2	39224615	rs5830551	G	GT	3035.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DB;DP=44;ExcessHet=3.0103;FS=1.873;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=1.20;SOR=0.502;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1339,132,0
chr2	39224747	rs4015854	A	ATT	322.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=0.792;SOR=3.126;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:23:79,0,23
chr2	39233500	rs7577088	G	A	2394.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=3.426;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:852,72,0
chr2	39251375	rs10634554	T	TCAC	3305.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=5.756;VQSLOD=5.92;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:54:810,54,0
chr2	39262068	rs10153761	C	T	4979.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=32.25;SOR=3.148;VQSLOD=5.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1037,90,0
chr2	39281730	rs997344	G	C	2064.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=5.709;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:250,21,0
chr2	39281905	rs55980502	G	A	706.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=61;ExcessHet=3.0103;FS=3.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-1.520e-01;SOR=1.214;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,31:61:99:715,0,614
chr2	39282079	rs2060987	A	G	367.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.14;SOR=3.056;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr2	39402978	rs11393458	A	AG	708.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=5.892;VQSLOD=7.21;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr2	39405570	rs17665998	G	A	234.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=1.85;SOR=0.693;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:27:72,0,27
chr2	39406572	rs7566123	C	A	1948.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=2.546;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:594,54,0
chr2	39417839	rs2708223	A	G	572.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=5.549;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:272,21,0
chr2	39417860	rs6544209	T	C	337.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=4.407;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr2	39440727	rs10196407	G	C	2101.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.228e+00;DB;DP=20;ExcessHet=3.0103;FS=3.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.63;ReadPosRankSum=1.47;SOR=0.325;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:608,60,0
chr2	39452861	rs11124663	C	T	3951.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.744;DB;DP=43;ExcessHet=3.0103;FS=0.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=-1.599e+00;SOR=0.842;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1445,129,0
chr2	39479122	rs3770678	G	C	1655.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=7.378;VQSLOD=24.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:440,30,0
chr2	39481401	.	G	A	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.89;ReadPosRankSum=-6.520e-01;SOR=0.941;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:141,0,109
chr2	39494197	rs2302749	C	T	1780.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=27;ExcessHet=3.0103;FS=3.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=1.43;SOR=1.675;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:888,80,0
chr2	39494469	rs10865149	C	G	1608.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.40;SOR=4.565;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:428,33,0
chr2	39507417	rs3755176	T	A	4882.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.540e-01;DB;DP=53;ExcessHet=3.0103;FS=1.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.40;ReadPosRankSum=-1.795e+00;SOR=0.586;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1582,158,0
chr2	39509363	rs6725790	G	C	112.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.56;SOR=2.833;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	39509921	rs12618944	G	C	311.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.61;ReadPosRankSum=1.15;SOR=3.056;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	39514136	rs3755172	T	C	2847.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=30;ExcessHet=3.0103;FS=6.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=0.563;SOR=1.481;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1051,90,0
chr2	39514204	rs3755171	G	C	1041.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.59;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=0.566;SOR=1.127;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:396,30,0
chr2	39517225	rs200698252	CAAAAAAAA	C	532.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=5.283;VQSLOD=6.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:260,18,0
chr2	39519718	rs11124672	T	C	658.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.67;ReadPosRankSum=0.189;SOR=2.948;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:254,18,0
chr2	39526842	rs2111382	A	C	6492.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=2.219;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1915,177,0
chr2	39536689	.	A	AT	592.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.247;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.53;MQRankSum=0.00;QD=17.41;ReadPosRankSum=-2.820e-01;SOR=1.058;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,8:9:15:121,15,0
chr2	39542658	rs58622649	AT	A	1512.99	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.88;ReadPosRankSum=1.54;SOR=3.056;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,17:18:28:445,28,0
chr2	39553271	rs3815594	A	G	5287.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=61;ExcessHet=3.0103;FS=6.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=-6.650e-01;SOR=1.200;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1995,183,0
chr2	39558928	rs6760382	G	A	11949.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=0.954;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3926,365,0
chr2	39564620	rs1125839	C	A	5276.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=1.388;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1767,174,0
chr2	39570427	rs3732053	T	C	3149.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.00;SOR=3.309;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:775,66,0
chr2	39583446	rs8545	A	G	8021.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.09;SOR=0.859;VQSLOD=4.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2009,201,0
chr2	39604876	rs12712640	A	G	74.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.71;SOR=1.179;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr2	39944055	rs2540229	G	A	1044.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527e+00;DB;DP=18;ExcessHet=6.9897;FS=2.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=0.082;SOR=1.329;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:411,0,195
chr2	39982898	rs10652050	G	GAGTAT	522.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;DB;DP=12;ExcessHet=1.5490;FS=7.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.05;ReadPosRankSum=2.29;SOR=3.145;VQSLOD=4.28;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,4:12:99:144,0,539
chr2	39988703	rs3732122	T	C	982.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.91;ReadPosRankSum=0.815;SOR=1.819;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:214,0,363
chr2	39993167	rs4670959	T	C	1896.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.740e-01;DB;DP=80;ExcessHet=3.9794;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-3.670e-01;SOR=0.608;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,37:80:99:791,0,979
chr2	39995885	rs7590912	C	T	1994.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e-01;DB;DP=19;ExcessHet=1.5490;FS=4.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.69;ReadPosRankSum=-2.630e-01;SOR=2.041;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:414,0,164
chr2	39995908	rs13400213	A	G	1382.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e+00;DB;DP=23;ExcessHet=3.9794;FS=1.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=0.129;SOR=0.897;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:467,0,227
chr2	39996457	rs13428837	C	T	118.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-1.465e+00;SOR=3.258;VQSLOD=16.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:127,0,147
chr2	40006430	rs12620957	A	C	1466.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.375e+00;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.21;ReadPosRankSum=-1.067e+00;SOR=0.566;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,9:21:99:0|1:40006430_A_C:275,0,694:40006430
chr2	40006442	rs35761077	C	T	491.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.64;ReadPosRankSum=1.34;SOR=0.986;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:40006430_A_C:138,0,635:40006430
chr2	40366301	rs2072532	G	A	1244.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=14;ExcessHet=1.5490;FS=2.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=0.818;SOR=1.666;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:221,0,134
chr2	40391789	rs1005213	G	T	227.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.31;ReadPosRankSum=0.524;SOR=1.402;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr2	40392313	rs434725	G	C	2218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.21;SOR=5.097;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:443,30,0
chr2	40402275	rs6734847	G	A	1978.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.42;SOR=2.137;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:487,42,0
chr2	40402646	rs146364894	A	ATG	915.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.223e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=1.92;SOR=3.126;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:250,21,0
chr2	40403104	rs106706	A	G	5974.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.900e-02;DB;DP=87;ExcessHet=3.0103;FS=2.574;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=-2.740e-01;SOR=0.514;VQSLOD=7.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2464,259,0
chr2	40404839	rs433572	C	T	3808.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=47;ExcessHet=3.0103;FS=5.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=2.22;SOR=1.597;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,45:47:91:1452,91,0
chr2	40564647	rs11893826	G	A	727.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-01;DB;DP=15;ExcessHet=3.9794;FS=2.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=0.229;SOR=1.175;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,6:15:99:0|1:40564647_G_A:225,0,590:40564647
chr2	40564655	rs11893746	C	T	727.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DB;DP=15;ExcessHet=3.9794;FS=2.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.114;SOR=1.232;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,6:15:99:0|1:40564647_G_A:225,0,577:40564647
chr2	40655563	.	CCACA	C	5984.41	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.46;ReadPosRankSum=0.221;SOR=1.434;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:42:99:1721,125,0
chr2	42165754	rs10192292	C	T	2910.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=98;ExcessHet=3.9794;FS=4.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=1.54;SOR=0.451;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,46:98:99:1191,0,1330
chr2	42165961	rs7590930	T	A	799.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.307e+00;DB;DP=19;ExcessHet=3.9794;FS=10.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.083;SOR=0.031;VQSLOD=18.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:229,0,378
chr2	42488198	rs2302345	A	G	827.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.78;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=1.36;SOR=0.914;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:437,30,0
chr2	42491751	rs35132936	C	T	497.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=3.767;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:514,39,0
chr2	42492191	rs13016514	A	C	1216.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=1.885;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1233,105,0
chr2	42509829	rs6723361	T	C	112.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.82;SOR=2.833;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr2	42510018	rs6736913	A	G	11489.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=1.325;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3203,296,0
chr2	42511627	rs2286704	T	G	743.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=5.784;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:760,51,0
chr2	42511903	rs6744779	A	G	3444.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=1.487;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3461,335,0
chr2	42513659	rs3732195	C	G	137.20	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,4:5:10:153,10,0
chr2	42515388	rs10202624	A	G	6365.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=1.056;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1570,156,0
chr2	42515437	rs28651764	A	G	1578.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=1.051;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1595,150,0
chr2	42522756	rs10490555	A	G	370.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.32;SOR=4.804;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
chr2	42531871	rs12464702	G	T	339.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=4.615;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:356,27,0
chr2	42544821	rs7558501	C	T	755.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=2.494;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:772,71,0
chr2	42553210	rs2286703	C	A	1880.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=1.609;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1897,183,0
chr2	42553578	rs11682029	A	C	67.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=2.303;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	42556022	rs2286700	A	T	1050.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.63;SOR=0.693;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1067,114,0
chr2	42560975	rs7572231	A	G	1121.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=1.179;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1138,114,0
chr2	42580071	rs3764907	T	C	79.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.50;SOR=1.179;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
chr2	42588195	rs3764906	T	C	4072.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.391e+00;DB;DP=140;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.09;ReadPosRankSum=1.31;SOR=0.309;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,139:140:99:4089,378,0
chr2	42719847	rs113015907	T	TG	22983.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.37;SOR=1.719;VQSLOD=5.15;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,175:175:99:1|1:42719847_T_TG:8086,548,0:42719847
chr2	42719860	rs112592817	G	GC	25613.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.90;SOR=1.525;VQSLOD=3.90;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,212:212:99:1|1:42719847_T_TG:9212,641,0:42719847
chr2	42795954	rs78106475	T	C	2494.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.42;SOR=0.742;VQSLOD=18.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:634,54,0
chr2	42996709	rs35746707	ATGTGTGTGTG	A,ATGTGTGTGTGTGTG	3437.21	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.048e+00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.70;ReadPosRankSum=-1.553e+00;SOR=1.848;VQSLOD=6.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,31,11:42:99:1723,462,466,1261,0,1228
chr2	42996759	rs10535571	AAGAG	A	4717.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=75;ExcessHet=3.9794;FS=5.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.67;ReadPosRankSum=1.85;SOR=0.352;VQSLOD=5.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,49:75:99:1963,0,918
chr2	42997614	rs2241850	G	A	3286.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993e+00;DB;DP=121;ExcessHet=3.9794;FS=1.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=1.39;SOR=0.588;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,68:121:99:1863,0,1450
chr2	43011169	rs4953660	G	T	1900.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=31;ExcessHet=6.9897;FS=1.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-9.210e-01;SOR=0.481;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:382,0,517
chr2	43015432	rs893731	T	C	706.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.01;ReadPosRankSum=0.674;SOR=1.519;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:74,0,65
chr2	43015612	rs3816181	G	T	8715.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.21;ReadPosRankSum=-2.495e+00;SOR=0.701;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,42:97:99:1131,0,1439
chr2	43015704	rs3816182	T	A	4698.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=201;ExcessHet=3.9794;FS=0.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=2.24;SOR=0.726;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,96:201:99:2008,0,2321
chr2	43015719	rs3816183	T	C	14399.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519e+00;DB;DP=204;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=1.96;SOR=0.664;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,97:204:99:1975,0,2474
chr2	43015757	rs3816184	G	A	12297.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965e+00;DB;DP=162;ExcessHet=3.0103;FS=0.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=-1.903e+00;SOR=0.828;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,76:162:99:1705,0,2184
chr2	43015902	rs3816185	G	A	2209.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.03;ReadPosRankSum=-5.300e-02;SOR=0.577;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:99:119,0,536
chr2	43019347	rs920391	G	C	1043.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=10;ExcessHet=3.0103;FS=2.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.83;ReadPosRankSum=-7.550e-01;SOR=1.981;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:93:93,0,201
chr2	43019364	rs920392	G	C	1383.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DB;DP=13;ExcessHet=3.0103;FS=4.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=-4.230e-01;SOR=2.200;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:79:79,0,287
chr2	43019730	rs2304656	A	G	2747.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200e-02;DB;DP=20;ExcessHet=3.0103;FS=4.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.93;ReadPosRankSum=1.27;SOR=1.511;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:160,0,349
chr2	43453086	rs35064085	G	A	299.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.90;ReadPosRankSum=-7.280e-01;SOR=1.022;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:53:307,0,53
chr2	43625078	rs7605661	T	C	773.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=22;ExcessHet=3.9794;FS=4.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=1.29;SOR=0.269;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:392,0,244
chr2	43625184	rs33979934	T	A	1798.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=69;ExcessHet=3.9794;FS=0.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=1.55;SOR=0.601;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:856,0,846
chr2	43657510	rs35340152	T	A	162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.391;SOR=0.368;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:171,0,360
chr2	43802261	rs970175	C	A	1270.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=6.932;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:408,30,0
chr2	43817783	.	CAAAAA	C,CAAAA	229.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.620e-01;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.54;MQRankSum=0.00;QD=11.46;ReadPosRankSum=-4.640e-01;SOR=0.693;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,2,4:9:54:134,79,324,55,0,54
chr2	43871983	rs12105773	T	C	954.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=30;ExcessHet=3.9794;FS=2.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.964;SOR=0.456;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:444,0,550
chr2	43902511	rs755862	G	C	1659.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=44;ExcessHet=3.9794;FS=4.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.952;SOR=1.223;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:552,0,610
chr2	43903066	rs3828297	A	G	2797.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;DB;DP=90;ExcessHet=3.9794;FS=1.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.117;SOR=0.833;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,42:90:99:1051,0,1256
chr2	43903354	rs4952675	T	C	2819.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=98;ExcessHet=3.9794;FS=1.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-4.160e-01;SOR=0.605;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,46:98:99:1170,0,1375
chr2	43903483	rs4952995	T	C	1620.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;DB;DP=68;ExcessHet=3.9794;FS=0.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.341;SOR=0.571;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,29:68:99:756,0,1028
chr2	43905876	rs113794228	A	G	271.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=10;ExcessHet=3.9794;FS=2.527;MQ=60.00;MQRankSum=0.00;QD=15.10;ReadPosRankSum=-5.450e-01;SOR=1.721;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:76:176,0,76
chr2	43919934	rs17031284	G	C	101.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.484;SOR=0.495;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:110,0,150
chr2	43919954	rs149919085	AG	A	48.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=1.83;SOR=0.307;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,132
chr2	43921489	rs12616572	A	T	1219.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.66;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.77;SOR=0.772;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:489,0,334
chr2	43924171	rs10211617	T	A	411.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=1.26;SOR=1.085;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:91:243,0,91
chr2	43926943	rs7606783	T	A	2937.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DB;DP=86;ExcessHet=3.9794;FS=1.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=1.18;SOR=0.793;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1274,0,1057
chr2	43927459	rs12623703	C	G	1097.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.235e+00;DB;DP=87;ExcessHet=3.0103;FS=1.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-1.227e+00;SOR=0.936;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1106,0,1386
chr2	43931055	.	CTTTTTTT	C,CTTTTTT	185.96	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.460e-01;DP=9;ExcessHet=1.5490;FS=2.680;MQ=58.79;MQRankSum=-2.820e-01;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=-9.670e-01;SOR=0.257;VQSLOD=1.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,3,4:9:32:124,32,193,61,0,66
chr2	43931176	rs4953002	T	C	2296.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DB;DP=90;ExcessHet=3.9794;FS=1.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.729;SOR=0.525;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,47:90:99:1151,0,1023
chr2	43931321	rs4953003	G	A	1081.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.11;SOR=0.634;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:455,0,543
chr2	43933354	rs9678037	C	G	169.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-1.369e+00;SOR=0.330;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:178,0,260
chr2	43936952	rs9678355	T	C	241.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.34;SOR=2.303;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:43936952_T_C:39,3,0:43936952
chr2	43936974	rs9679009	A	G	281.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.27;ReadPosRankSum=0.967;SOR=1.609;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:43936952_T_C:81,6,0:43936952
chr2	43947912	rs116119494	C	G	416.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.380e-01;DB;DP=25;ExcessHet=3.0103;FS=10.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=-8.710e-01;SOR=3.477;VQSLOD=12.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:425,0,352
chr2	43991357	rs7565517	A	C	1712.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=1.61;SOR=0.730;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:376,0,434
chr2	44049617	rs7423086	G	C	253.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.07;SOR=1.609;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	44055446	rs4557032	G	A	581.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030e+00;DB;DP=19;ExcessHet=6.9897;FS=2.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.480e-01;SOR=1.164;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:215,0,252
chr2	44055527	rs4549146	T	C	243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=11;ExcessHet=6.9897;FS=1.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=0.105;SOR=0.446;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:110,0,173
chr2	44066174	rs3806471	T	G	1784.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=34;ExcessHet=6.9897;FS=1.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=1.73;SOR=0.881;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,10:34:99:323,0,747
chr2	44071625	rs4148209	C	A	4105.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207e+00;DB;DP=105;ExcessHet=6.9897;FS=1.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.051;SOR=0.600;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1150,0,1399
chr2	44071639	rs4148210	C	T	3989.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115e+00;DB;DP=107;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.717;SOR=0.683;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,48:107:99:1200,0,1447
chr2	44071743	rs4148211	A	G	3211.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=71;ExcessHet=6.9897;FS=0.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.915;SOR=0.614;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,35:71:99:878,0,888
chr2	44071833	rs4148212	A	C	1055.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.773;SOR=0.816;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:334,0,254
chr2	44071852	rs4148213	G	C	764.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e-02;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-7.100e-02;SOR=0.551;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:299,0,170
chr2	44079004	rs4148214	T	C	6165.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=86;ExcessHet=3.9794;FS=4.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=0.499;SOR=1.080;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,38:86:99:1175,0,1411
chr2	44101214	rs10709506	CA	C	2891.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.861;SOR=0.859;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,18:31:99:619,0,432
chr2	44101394	rs4953027	A	G	918.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.11;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.60;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=-9.600e-02;SOR=0.616;VQSLOD=4.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:229,0,135
chr2	44101430	rs4952689	T	G	981.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=1.07;SOR=0.619;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:371,0,268
chr2	44101538	rs28517482	C	T	3817.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=56;ExcessHet=3.9794;FS=1.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=0.241;SOR=0.830;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,29:56:99:769,0,732
chr2	44101649	rs10667526	G	GC	964.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=36;ExcessHet=3.9794;FS=5.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=1.71;SOR=1.605;VQSLOD=6.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,19:36:99:485,0,423
chr2	44101711	rs13405698	T	C	371.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=21;ExcessHet=3.9794;FS=2.319;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.497;SOR=0.257;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:295,0,310
chr2	44101827	rs4953028	G	A	197.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=3;ExcessHet=3.9794;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-6.080e-01;SOR=0.105;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:26:26,0,32
chr2	44102197	rs55924588	T	C	610.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.270e-01;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=1.35;SOR=0.773;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:619,0,708
chr2	44104925	rs6544718	T	C	13822.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=168;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=-1.558e+00;SOR=0.784;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,98:168:99:2659,0,1772
chr2	44116100	rs10445885	C	T	374.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=1.5490;FS=5.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.84;ReadPosRankSum=-8.420e-01;SOR=3.442;VQSLOD=16.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:135,0,60
chr2	44116836	rs2955280	C	T	2766.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.362e+00;DB;DP=72;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=0.114;SOR=0.644;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,31:72:99:738,0,1114
chr2	44117563	rs74919473	A	C	580.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.227;SOR=0.425;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:273,0,127
chr2	44123758	rs76850904	G	A	1399.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.958;DB;DP=52;ExcessHet=3.9794;FS=0.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=1.39;SOR=0.566;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:695,0,668
chr2	44124055	rs10495910	T	C	305.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=1.65;SOR=1.445;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:64:199,0,64
chr2	44139474	rs17424482	A	G	550.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.091e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=0.302;SOR=1.255;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:224,0,167
chr2	44152058	rs62138280	A	G	1216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=1.25;SOR=0.760;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,12:35:99:310,0,680
chr2	44152180	rs4952694	G	A	2876.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571e+00;DB;DP=102;ExcessHet=1.5490;FS=3.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=0.856;SOR=0.469;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,37:102:99:753,0,1711
chr2	44152995	rs62138281	C	G	1927.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=72;ExcessHet=3.9794;FS=2.768;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-2.990e-01;SOR=0.710;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,24:72:99:531,0,1319
chr2	44187652	rs62135104	A	G	2219.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402e+00;DB;DP=99;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=1.90;SOR=0.710;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1196,0,1322
chr2	44187829	rs10190161	A	C	4330.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.719e+00;DB;DP=50;ExcessHet=3.0103;FS=2.224;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.25;ReadPosRankSum=-1.330e-01;SOR=0.413;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1565,150,0
chr2	44204017	rs62135113	C	G	423.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-1.158e+00;SOR=0.560;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:147,0,200
chr2	44209133	rs150989251	GC	G	100.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=2.833;VQSLOD=4.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr2	44209477	rs6741066	C	T	4462.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=60;ExcessHet=3.0103;FS=1.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=0.185;SOR=0.640;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1856,180,0
chr2	44222881	rs62135152	C	A	865.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=1.22;SOR=0.208;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:317,0,405
chr2	44223131	rs11124961	C	T	3239.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612e+00;DB;DP=193;ExcessHet=3.9794;FS=2.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.465;SOR=0.863;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,81:193:99:1775,0,2900
chr2	44471409	rs12613956	T	G	178.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=0.305;SOR=1.179;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:187,0,99
chr2	44502788	rs3738985	A	C	17413.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=239;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=1.16;SOR=0.720;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,239:239:99:7224,717,0
chr2	44508835	rs11124986	G	A	1214.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.93;ReadPosRankSum=0.091;SOR=1.136;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,245
chr2	44512971	rs3768919	G	A	3071.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=37;ExcessHet=3.9794;FS=11.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=1.13;SOR=1.502;VQSLOD=17.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:748,0,440
chr2	44531081	rs4953083	G	T	440.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=4.7712;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=24.47;ReadPosRankSum=2.000e-03;SOR=2.985;VQSLOD=17.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:107,0,72
chr2	44531484	rs3738984	C	T	3268.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379e+00;DB;DP=40;ExcessHet=3.9794;FS=4.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=0.760;SOR=1.296;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:790,0,461
chr2	44545234	rs11348872	GT	G	2062.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=43;ExcessHet=3.9794;FS=1.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=1.77;SOR=0.556;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,14:43:99:287,0,422
chr2	44547574	rs698761	G	A	5994.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.169e+00;DB;DP=84;ExcessHet=3.9794;FS=2.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.171;SOR=0.648;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1357,0,1161
chr2	44547909	rs8886	T	C	1086.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=-8.900e-02;SOR=0.756;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:108,0,248
chr2	44548282	rs11124988	T	C	265.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=2.833;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr2	44548613	rs2241871	T	C	2815.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=49;ExcessHet=3.9794;FS=2.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=-1.410e-01;SOR=0.905;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:49:99:544,0,658
chr2	44550290	rs2053454	A	G	854.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.92;ReadPosRankSum=-1.368e+00;SOR=1.552;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:62:62,0,141
chr2	44553734	rs10183231	G	A	200.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=2.303;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	44556298	rs2033951	T	C	1442.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=0.079;SOR=0.859;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:228,0,139
chr2	44565323	rs17032140	T	C	137.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.59;ReadPosRankSum=1.28;SOR=1.981;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:146,0,26
chr2	44565447	rs2289463	A	T	1740.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.724;SOR=0.773;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:554,0,422
chr2	44569474	rs2304769	G	A	1735.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.64;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.45;ReadPosRankSum=-8.450e-01;SOR=0.716;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:561,51,0
chr2	44569700	rs61004197	AAAT	A	4386.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.070e-01;DB;DP=60;ExcessHet=3.9794;FS=3.291;MQ=60.00;MQRankSum=0.00;QD=27.25;ReadPosRankSum=0.100;SOR=0.438;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,33:60:99:1229,0,1123
chr2	44569739	rs11421998	T	TA	577.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e-01;DB;DP=24;ExcessHet=6.9897;FS=1.604;MQ=60.00;MQRankSum=0.00;QD=9.80;ReadPosRankSum=-1.164e+00;SOR=0.446;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,9:24:99:150,0,299
chr2	44570642	rs17032159	G	C	91.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-9.920e-01;SOR=0.368;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:100,0,200
chr2	44570776	rs17580226	C	T	3949.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=70;ExcessHet=3.9794;FS=1.866;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=0.195;SOR=0.850;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,29:70:99:704,0,1095
chr2	44570804	rs12053381	C	A	4830.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142e+00;DB;DP=84;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=0.212;SOR=0.718;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,37:84:99:871,0,1247
chr2	44571109	rs10514790	G	A	498.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DB;DP=21;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=1.84;SOR=3.383;VQSLOD=16.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,15:21:99:507,0,142
chr2	44571215	rs35987136	CAAT	C	319.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=1.04;SOR=1.445;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,166
chr2	44571849	rs17498312	G	A	227.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=1.66;SOR=1.270;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:236,0,330
chr2	44573267	rs148666471	TTTTAAG	T	141.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-6.000e-03;SOR=1.329;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:150,0,471
chr2	44573624	rs698763	G	A	2638.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.526e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=-6.360e-01;SOR=0.624;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:932,69,0
chr2	44573658	rs698764	T	C	1381.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.28;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.14;ReadPosRankSum=-4.890e-01;SOR=2.356;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:433,30,0
chr2	44573671	rs698765	G	T	1146.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.50;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.86;ReadPosRankSum=-4.940e-01;SOR=2.432;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:426,30,0
chr2	44586621	rs77060839	T	C	285.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.240e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=2.73;SOR=0.941;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:294,0,244
chr2	44617324	rs1085486	T	A	2399.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.839;DB;DP=47;ExcessHet=3.9794;FS=1.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-1.140e-01;SOR=0.562;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1370,141,0
chr2	44622226	rs74262109	G	C	164.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.204;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:173,0,102
chr2	44622256	rs1067342	A	C	275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.490e-01;DB;DP=7;ExcessHet=6.9897;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-1.611e+00;SOR=0.155;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:69:69,0,141
chr2	44776597	rs13425435	C	A	268.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=-6.740e-01;SOR=2.833;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr2	44858687	rs10191477	T	C	3612.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.770e+00;DB;DP=48;ExcessHet=3.0103;FS=3.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=-1.278e+00;SOR=0.383;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1395,144,0
chr2	44942331	.	CAA	C	99.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=14;ExcessHet=4.7712;FS=3.197;MQ=60.00;MQRankSum=0.00;QD=6.63;ReadPosRankSum=0.431;SOR=0.105;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:14:60:60,0,258
chr2	44942384	rs343957	C	G	2464.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.402;VQSLOD=4.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1196,113,0
chr2	44981119	rs3738980	T	G	698.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e-01;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-2.680e-01;SOR=0.844;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:707,0,761
chr2	44993487	rs11679997	C	T	582.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=41;ExcessHet=3.0103;FS=10.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-7.700e-01;SOR=2.564;VQSLOD=15.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:591,0,514
chr2	45170153	rs4953152	G	A	2920.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=52;ExcessHet=6.9897;FS=0.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-3.700e-02;SOR=0.838;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:945,0,712
chr2	45170194	rs338079	A	G	458.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.09;DB;DP=25;ExcessHet=3.0103;FS=3.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=0.381;SOR=1.863;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:467,0,335
chr2	45171842	rs338074	A	G	24540.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.440e-01;DB;DP=378;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=0.595;SOR=0.633;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:215,163:378:99:3608,0,5294
chr2	45715556	rs67396287	G	GA	565.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.986;SOR=0.551;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,6:18:99:106,0,279
chr2	45715648	rs3755080	T	C	481.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=0.00;SOR=1.828;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:91,0,27
chr2	45806963	rs374392017	TA	T	324.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.860e-01;DB;DP=19;ExcessHet=6.9897;FS=1.988;MQ=60.00;MQRankSum=0.00;QD=3.92;ReadPosRankSum=-6.600e-02;SOR=1.022;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:19:99:125,0,212
chr2	45812823	.	G	A	789.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DP=53;ExcessHet=3.0103;FS=1.144;MQ=60.00;MQRankSum=0.00;QD=14.89;ReadPosRankSum=0.876;SOR=0.518;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,31:53:99:798,0,513
chr2	45879610	rs637909	A	G	3138.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.442e+00;DB;DP=22;ExcessHet=3.0103;FS=13.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.39;ReadPosRankSum=-6.600e-02;SOR=3.712;VQSLOD=11.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:298,0,386
chr2	46237446	rs1987070	C	A	3000.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=69;ExcessHet=1.5490;FS=2.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=1.27;SOR=0.518;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2103,205,0
chr2	46378419	rs71824792	TACACAC	T,TAC	3426.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.73;QD=34.52;SOR=2.610;VQSLOD=4.76;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,8,25:33:99:1378,691,592,229,0,129
chr2	46583235	rs6743991	C	A	332.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=59.23;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=0.189;SOR=0.941;VQSLOD=4.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:105,0,110
chr2	46583278	rs61586942	C	CG	452.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.46;ReadPosRankSum=1.47;SOR=2.584;VQSLOD=4.95;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:6:0|1:46583278_C_CG:460,0,6:46583278
chr2	46583279	rs142684263	C	CT	474.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.75;ReadPosRankSum=0.487;SOR=1.981;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,10:11:3:0|1:46583278_C_CG:482,0,3:46583278
chr2	46583281	rs35508970	C	T	589.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.75;ReadPosRankSum=0.251;SOR=1.085;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,13:14:3:0|1:46583278_C_CG:482,0,3:46583278
chr2	46583593	rs2278753	G	A	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=23;ExcessHet=3.0103;FS=1.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=1.08;SOR=1.347;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:341,0,341
chr2	46602678	rs7606559	C	A	705.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-8.350e-01;SOR=0.741;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:150,0,215
chr2	46602722	rs7567582	T	C	1217.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DB;DP=22;ExcessHet=1.5490;FS=3.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.88;ReadPosRankSum=0.392;SOR=1.432;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,5:22:99:109,0,510
chr2	46603671	rs7557402	C	G	4762.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DB;DP=92;ExcessHet=3.9794;FS=5.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-6.170e-01;SOR=1.000;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,41:92:99:841,0,1338
chr2	46605659	rs7571218	A	G	1089.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=0.559;SOR=1.559;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:223,0,243
chr2	46605954	rs7598371	G	C	3483.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.476e+00;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=1.36;SOR=0.705;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,35:61:99:911,0,714
chr2	46608542	rs13006131	C	G	1276.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.729;SOR=1.091;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:309,0,551
chr2	46609957	rs11690950	A	G	707.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.50;ReadPosRankSum=-9.100e-02;SOR=1.802;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:141,0,498
chr2	46611471	rs56768253	G	A	465.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.298e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=-1.380e-01;SOR=1.609;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:180,0,265
chr2	46708119	rs62134690	G	T	241.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493e+00;DB;DP=29;ExcessHet=3.0103;FS=3.319;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-8.800e-02;SOR=0.283;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:250,0,452
chr2	46739157	rs3814045	A	G	5764.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053e+00;DB;DP=108;ExcessHet=1.5490;FS=1.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=-2.500e-01;SOR=0.846;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,50:108:99:1139,0,1486
chr2	46771134	rs6714484	G	C	9552.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.56;SOR=5.495;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2557,181,0
chr2	46799852	rs1451153	G	T	3179.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e+00;DB;DP=36;ExcessHet=3.0103;FS=1.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=0.413;SOR=1.110;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,25:36:99:578,0,239
chr2	46800204	rs35844392	AT	A	151.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.65;ReadPosRankSum=0.967;SOR=1.402;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:2:41,0,2
chr2	46808168	rs55654131	C	T	151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586e+00;DB;DP=15;ExcessHet=3.0103;FS=2.187;MQ=58.60;MQRankSum=0.014;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.230;SOR=1.371;VQSLOD=-7.370e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:160,0,306
chr2	46808243	rs149388763	GGA	G	611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=55.07;MQRankSum=1.28;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=1.19;SOR=0.756;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,114
chr2	46818992	rs17818315	C	T	1177.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.643;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.924;SOR=0.660;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,26:44:99:625,0,428
chr2	46819815	rs2305350	A	G	4331.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.060e-01;DB;DP=47;ExcessHet=3.0103;FS=0.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.91;ReadPosRankSum=0.909;SOR=0.884;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,29:47:99:723,0,431
chr2	46839477	rs1824050	T	C	452.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DB;DP=10;ExcessHet=6.9897;FS=1.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-4.340e-01;SOR=0.869;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:118,0,103
chr2	46840680	rs4952836	T	A	315.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=9;ExcessHet=6.9897;FS=11.146;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-1.890e-01;SOR=0.045;VQSLOD=2.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:85:85,0,166
chr2	46841861	rs7565274	G	T	626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DB;DP=13;ExcessHet=6.9897;FS=7.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=1.39;SOR=2.376;VQSLOD=18.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,239
chr2	46842410	rs2242033	A	G	2691.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=18;ExcessHet=3.0103;FS=3.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.41;ReadPosRankSum=1.13;SOR=2.584;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,15:18:36:495,0,36
chr2	46844219	rs5830914	C	CG	919.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=6.439;VQSLOD=6.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr2	46845849	rs2122715	A	G	1348.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.060;SOR=0.679;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:336,0,289
chr2	46986416	rs6738426	A	G	1875.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;DB;DP=97;ExcessHet=3.9794;FS=0.603;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-3.840e-01;SOR=0.605;VQSLOD=5.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,37:97:99:798,0,1359
chr2	46987139	rs17771838	G	A	2721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=84;ExcessHet=3.9794;FS=1.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-7.000e-03;SOR=0.810;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,42:84:99:1152,0,1027
chr2	46987300	rs3768720	T	G	895.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.692e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=0.258;SOR=0.586;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:486,39,0
chr2	47081092	rs11687883	C	T	9007.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.715;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=-1.024e+00;SOR=0.365;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2920,278,0
chr2	47083030	rs3835756	ATG	A	2063.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=2.160;VQSLOD=5.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:30:345,30,0
chr2	47083042	rs3768718	A	T	1256.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DB;DP=21;ExcessHet=3.0103;FS=1.718;MQ=60.00;MQRankSum=0.00;QD=19.64;ReadPosRankSum=1.92;SOR=0.481;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:367,0,202
chr2	47083044	rs1079	A	T	2987.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.03;SOR=2.303;VQSLOD=19.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:897,66,0
chr2	47083252	rs11691225	G	T	2739.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.62;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=1.73;SOR=0.677;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1509,140,0
chr2	47085398	rs2278711	C	T	1158.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.749;DB;DP=12;ExcessHet=3.0103;FS=5.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.97;ReadPosRankSum=0.964;SOR=2.428;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:450,36,0
chr2	47132529	rs71423925	T	C	186.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.11;SOR=3.611;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr2	47132945	rs7600882	G	T	827.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e+00;DB;DP=16;ExcessHet=3.9794;FS=1.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=2.34;SOR=0.515;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:228,0,325
chr2	47133055	rs11890177	T	C	1263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=1.15;SOR=0.730;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:400,0,441
chr2	47133330	rs7603903	G	A	367.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.00;SOR=1.483;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,140
chr2	47169003	rs6755303	C	T	649.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.471e+00;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=1.12;SOR=0.336;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:292,0,622
chr2	47183650	rs2278450	T	C	946.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.250e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.81;ReadPosRankSum=1.94;SOR=3.258;VQSLOD=18.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr2	47185438	rs4952856	G	A	910.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=84;ExcessHet=3.0103;FS=1.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-2.590e-01;SOR=0.455;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,35:84:99:919,0,1323
chr2	47201797	rs6745836	A	T	1557.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.890e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=2.38;SOR=0.671;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:84:812,84,0
chr2	47201988	rs72888545	C	T	402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.40;ReadPosRankSum=-4.470e-01;SOR=0.582;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,9:13:99:0|1:47201988_C_T:337,0,141:47201988
chr2	47201991	rs67758600	CT	C	110.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=0.297;SOR=0.836;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,4:13:99:1|0:47201988_C_T:119,0,366:47201988
chr2	47220618	rs78745374	G	A	608.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DB;DP=68;ExcessHet=3.0103;FS=2.059;MQ=60.00;MQRankSum=0.00;QD=8.94;ReadPosRankSum=0.524;SOR=0.978;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,26:68:99:617,0,1076
chr2	47233090	rs113844968	G	T	3063.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.676e+00;DB;DP=232;ExcessHet=3.0103;FS=3.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.613;SOR=0.909;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,123:232:99:3072,0,2954
chr2	47248726	rs13023952	A	G	209.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=1.04;SOR=0.368;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:47248726_A_G:75,0,224:47248726
chr2	47248727	rs13000736	T	C	209.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=1.04;SOR=0.473;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:47248726_A_G:75,0,224:47248726
chr2	47249239	rs3814036	A	G	56.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.04;ReadPosRankSum=-7.120e-01;SOR=0.223;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:65:65,0,179
chr2	47250819	rs12988535	A	G	2296.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018e+00;DB;DP=21;ExcessHet=3.9794;FS=1.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=1.42;SOR=1.225;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,16:21:99:564,0,150
chr2	47287594	rs2570514	T	G	548.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.90;SOR=5.283;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr2	47314052	rs1474394	T	C	659.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.410e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.99;ReadPosRankSum=-8.420e-01;SOR=2.531;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:255,18,0
chr2	47314492	rs10865215	A	G	268.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=5;ExcessHet=3.0103;FS=6.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=0.703;SOR=0.061;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:173,15,0
chr2	47317250	rs28679288	T	C	220.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=16;ExcessHet=3.0103;FS=3.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.933;SOR=2.303;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:229,0,238
chr2	47348347	rs1880583	C	T	5859.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.324e+00;DB;DP=69;ExcessHet=3.0103;FS=0.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=0.810;SOR=0.584;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2180,207,0
chr2	47357458	rs58184321	A	G	4951.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.097e+00;DB;DP=71;ExcessHet=3.0103;FS=0.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.76;ReadPosRankSum=1.17;SOR=0.564;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2025,213,0
chr2	47380203	rs815809	T	C	4978.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=1.287;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1427,138,0
chr2	47382214	rs815806	C	G	8227.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=1.660;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2616,233,0
chr2	47382342	rs815804	G	T	6703.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.720e+00;DB;DP=147;ExcessHet=1.5490;FS=3.395;MQ=59.99;MQRankSum=-1.000e+00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-1.666e+00;SOR=0.564;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4606,439,0
chr2	47387989	rs370967655	CAAAA	C	891.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=6;ExcessHet=3.0103;FS=4.771;MQ=59.95;MQRankSum=0.00;QD=33.03;ReadPosRankSum=0.489;SOR=1.549;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:260,18,0
chr2	47388765	rs2454084	C	G	749.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.15;SOR=4.294;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:47388765_C_G:180,12,0:47388765
chr2	47388766	rs2454085	A	G	749.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.92;SOR=4.294;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:47388765_C_G:180,12,0:47388765
chr2	47399270	rs34473440	TCA	T	507.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.03;SOR=5.136;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	47641559	.	TAA	T	1227.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.75;MQRankSum=-3.440e-01;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=1.07;SOR=0.607;VQSLOD=1.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:13:25:227,0,25
chr2	47643274	rs17224276	C	T	121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.465e+00;SOR=0.412;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,194
chr2	47656801	rs2347794	G	A	333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103e+00;DB;DP=2;ExcessHet=6.9897;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=0.00;SOR=0.169;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:36:36,0,39
chr2	47657196	.	CT	C	95.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.65;ReadPosRankSum=0.524;SOR=1.402;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:10:69,0,10
chr2	47672569	rs1981929	G	A	1235.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680e+00;DB;DP=21;ExcessHet=6.9897;FS=3.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=0.599;SOR=2.398;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:356,0,319
chr2	47702451	rs201305711	GT	G,GTT	415.71	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.850e-01;DB;DP=24;ExcessHet=1.5490;FS=3.375;MQ=59.79;MQRankSum=0.00;QD=9.24;ReadPosRankSum=0.680;SOR=1.460;VQSLOD=5.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,7,12:24:90:273,197,339,90,0,144
chr2	47703379	rs2059521	C	T	1617.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.87;SOR=7.328;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:384,27,0
chr2	47709807	rs6737098	T	A	102.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=0.319;SOR=2.788;VQSLOD=18.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:112,0,29
chr2	47739551	rs2303424	A	G	2878.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.670e-01;DB;DP=68;ExcessHet=6.9897;FS=1.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=1.09;SOR=0.584;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,34:68:99:793,0,964
chr2	47748292	rs2278139	A	G	7278.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DB;DP=177;ExcessHet=6.9897;FS=0.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.238;SOR=0.744;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,69:177:99:1771,0,3089
chr2	48010214	rs41540312	C	T	714.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.96;SOR=3.611;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:731,57,0
chr2	48016314	rs3136267	T	C	244.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=2.584;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:256,21,0
chr2	48018314	rs3136282	T	A	1641.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.29;DB;DP=32;ExcessHet=3.9794;FS=1.497;MQ=60.00;MQRankSum=0.00;QD=23.46;ReadPosRankSum=1.69;SOR=0.354;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:99:1235,102,0
chr2	48022900	rs3136316	A	G	894.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.40;SOR=3.611;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:316,27,0
chr2	48023115	rs1800935	T	C	1891.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DB;DP=54;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=1.67;SOR=0.619;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1542,162,0
chr2	48025694	rs1800936	C	T	310.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=3.056;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:327,27,0
chr2	48025764	rs1800937	C	T	1037.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=2.303;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1054,90,0
chr2	48028465	rs3136337	C	T	68.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=2.303;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	48030458	rs2072447	G	C	3956.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.700e+00;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.85;ReadPosRankSum=0.323;SOR=1.455;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,42:43:85:1361,85,0
chr2	48032572	rs3136357	C	T	116.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=1.609;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr2	48032613	rs7562367	G	A	1251.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.52;SOR=3.611;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:281,21,0
chr2	48032874	rs2234731	ACTAT	A	6712.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=2.005;VQSLOD=5.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1980,133,0
chr2	48032937	rs3136359	T	C	2985.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.21;SOR=3.669;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:683,54,0
chr2	48033272	rs148100105	ATTTTTGTTTTAATTCCT	A	1550.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.00;SOR=3.321;VQSLOD=4.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1567,106,0
chr2	48033546	rs142812704	C	CT	4661.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=0.4576;FS=0.000;MQ=59.86;POSITIVE_TRAIN_SITE;QD=27.06;SOR=0.712;VQSLOD=4.78;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,105:105:99:1|1:48033546_C_CT:4678,319,0:48033546
chr2	48033551	rs3136367	C	G	12148.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=30.51;SOR=0.724;VQSLOD=4.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,105:105:99:1|1:48033546_C_CT:4779,328,0:48033546
chr2	48033890	.	CTT	C,CT	1116.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.187;DP=31;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-1.320e-01;SOR=0.667;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,8,19:31:99:619,341,369,168,0,124
chr2	48035631	rs149916835	TTTATA	T	433.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.02;SOR=4.804;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr2	48040699	rs142497508	T	C	111.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.57;SOR=2.833;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	48040904	rs373765859	G	GA	5571.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.880e-01;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=-5.800e-01;SOR=0.667;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2507,244,0
chr2	48046012	rs374445177	TA	T	227.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DB;DP=33;ExcessHet=6.9897;FS=1.863;MQ=59.75;MQRankSum=0.00;QD=2.02;ReadPosRankSum=-1.990e-01;SOR=0.490;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,8:33:99:101,0,489
chr2	48049129	rs78491566	G	C	113.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.51;SOR=1.179;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr2	48050196	rs77966926	T	C	148.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=3.258;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr2	48050686	rs112165001	A	G	273.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=0.00;SOR=0.473;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:219,18,0
chr2	48063241	rs74467836	G	C	202.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=3.611;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:219,15,0
chr2	48065744	rs79309874	C	T	295.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=-1.890e-01;SOR=1.802;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr2	48586034	rs57893565	C	G	134.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.674;SOR=0.527;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:33:36,0,33
chr2	48602186	rs34136171	A	G	1435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.056;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-1.637e+00;SOR=0.696;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,57:120:99:1444,0,1634
chr2	48602252	rs17855177	C	T	1021.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=0.851;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-8.700e-02;SOR=0.629;VQSLOD=2.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,40:98:99:1030,0,1579
chr2	48689044	rs10865229	T	G	1903.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=7.523;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:48689044_T_G:445,30,0:48689044
chr2	48689053	rs11125171	A	G	908.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.66;ReadPosRankSum=-8.700e-02;SOR=2.753;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,6:11:99:0|1:48689044_T_G:217,0,173:48689044
chr2	48692904	rs74395349	A	G	115.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-1.790e-01;SOR=0.330;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:124,0,254
chr2	48732944	rs4293602	A	G	1308.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.13;SOR=6.994;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:291,21,0
chr2	48734331	.	CT	C	775.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DP=35;ExcessHet=3.9794;FS=0.000;MQ=59.86;MQRankSum=0.00;QD=10.92;ReadPosRankSum=1.60;SOR=0.595;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,12:35:99:154,0,467
chr2	48734576	rs6716341	G	A	11965.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=1.738;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3580,347,0
chr2	48734725	rs6744619	A	C	1649.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.88;SOR=5.084;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:614,45,0
chr2	48738388	rs62135170	C	T	900.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.623;SOR=0.738;VQSLOD=6.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:553,0,621
chr2	48738687	rs4528813	G	C	3735.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=3.352;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1090,84,0
chr2	48757257	.	T	TTCCTCCGCCTCC	374.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.02;ReadPosRankSum=1.22;SOR=1.371;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:90:0|1:48757257_T_TTCCTCCGCCTCC:90,0,457:48757257
chr2	48757288	rs116061481	C	T	1222.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.238e+00;DB;DP=34;ExcessHet=3.9794;FS=1.941;MQ=60.00;MQRankSum=0.00;QD=16.52;ReadPosRankSum=0.219;SOR=0.978;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,18:34:99:0|1:48757257_T_TTCCTCCGCCTCC:520,0,702:48757257
chr2	48808152	rs940389	G	C	2942.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=169;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=-1.290e-01;SOR=0.704;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,59:169:99:1475,0,2907
chr2	48809756	rs3792235	T	C	1213.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=35;ExcessHet=3.9794;FS=0.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=0.545;SOR=0.559;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:444,0,452
chr2	48822381	rs2140551	G	A	2149.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.700e-02;DB;DP=43;ExcessHet=1.5490;FS=1.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=-2.104e+00;SOR=0.928;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1421,129,0
chr2	48844968	rs2293269	C	G	5763.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=107;ExcessHet=1.5490;FS=1.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=0.073;SOR=0.559;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3461,321,0
chr2	48848640	rs2103113	T	C	153.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.79;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	48873978	rs10432667	A	G	3097.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=99;ExcessHet=3.9794;FS=4.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.404;SOR=0.967;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,42:99:99:1084,0,1438
chr2	48898798	rs3920390	T	A	13362.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=0.914;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4430,448,0
chr2	48906625	rs1965508	T	C	8592.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.04;SOR=0.874;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2862,302,0
chr2	48915871	rs11125179	A	G	4389.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.620e-01;DB;DP=89;ExcessHet=1.5490;FS=7.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=-1.301e+00;SOR=0.952;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2933,267,0
chr2	48921375	rs2293275	T	C	2726.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.980e-01;DB;DP=55;ExcessHet=1.5490;FS=3.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=0.024;SOR=0.519;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1701,165,0
chr2	48925691	rs11675952	C	G	1028.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=31;ExcessHet=3.9794;FS=2.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.745;SOR=0.419;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,23:31:99:599,0,183
chr2	48925746	rs6755901	C	T	5083.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=1.222;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1668,159,0
chr2	48925986	rs70946824	AT	A	525.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.26;SOR=3.716;VQSLOD=2.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:94,12,0
chr2	48935930	rs34594563	T	C	78.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.030e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=-1.050e-01;SOR=0.223;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:87:87,0,250
chr2	48941428	rs4953616	C	T	265.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.68;SOR=4.174;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
chr2	48952701	rs6545063	C	G	1270.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=5.486;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:311,24,0
chr2	48953209	rs4953617	C	T	232.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.38;SOR=3.912;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	48956431	rs11892719	T	A	2744.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.912;DB;DP=25;ExcessHet=3.0103;FS=3.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.20;ReadPosRankSum=1.03;SOR=0.336;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:857,75,0
chr2	48956475	rs11887058	C	T	1873.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.534e+00;DB;DP=19;ExcessHet=3.0103;FS=2.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=-4.980e-01;SOR=0.431;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:653,57,0
chr2	48956512	rs11897846	A	G	1063.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.233;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.24;ReadPosRankSum=-7.800e-02;SOR=1.179;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:337,27,0
chr2	48958626	rs7588339	A	G	325.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	48958647	rs7561945	C	T	248.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.697;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=0.674;SOR=1.270;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	48958687	rs7562215	G	T	175.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.189;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	48960032	rs10495960	G	A	2543.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.463e+00;DB;DP=75;ExcessHet=3.9794;FS=0.572;MQ=59.92;MQRankSum=1.10;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=1.47;SOR=0.635;VQSLOD=2.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1102,0,1070
chr2	48960317	rs4637174	A	G	1109.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=-1.230e-01;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:392,0,119
chr2	48982358	rs4073368	G	A	92.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,112
chr2	48982485	rs4073367	T	C	918.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=33;ExcessHet=3.9794;FS=4.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.31;SOR=1.317;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:355,0,457
chr2	48982622	rs4073366	C	G	1314.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=45;ExcessHet=3.9794;FS=2.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=1.01;SOR=1.027;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:642,0,441
chr2	49003458	rs62135453	C	T	546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=63;ExcessHet=3.0103;FS=7.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.67;ReadPosRankSum=-6.400e-02;SOR=1.708;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,23:63:99:555,0,972
chr2	49003623	rs4453732	T	G	312.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.930e-01;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=0.992;SOR=1.609;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:107,0,32
chr2	49189921	rs6166	C	T	7091.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.70;DB;DP=100;ExcessHet=3.0103;FS=8.971;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.068;SOR=0.344;VQSLOD=5.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2921,299,0
chr2	49191041	rs6165	C	T	5211.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.962e+00;DB;DP=53;ExcessHet=3.0103;FS=4.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=0.731;SOR=0.371;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1762,159,0
chr2	49215977	rs2072488	G	A	2300.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=4.103;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:47:585,47,0
chr2	49216284	rs2072487	C	T	2075.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=5.136;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:408,33,0
chr2	49217916	rs2072486	T	G	1130.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=1.53;SOR=1.022;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:16:193,0,16
chr2	49218031	rs10644983	T	TAA	62.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=2.303;VQSLOD=6.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr2	49241849	rs6708637	G	A	2030.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.21;ReadPosRankSum=-1.360e-01;SOR=0.965;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:793,68,0
chr2	49244559	rs2091787	A	G	2906.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=69;ExcessHet=1.5490;FS=1.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=-8.430e-01;SOR=0.518;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:881,0,920
chr2	49286879	rs11125201	C	A	1552.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.389;SOR=0.666;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,23:59:99:506,0,939
chr2	49286988	rs11679050	C	A	269.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004e+00;DB;DP=28;ExcessHet=3.0103;FS=2.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-1.696e+00;SOR=0.223;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:278,0,550
chr2	49287066	rs10865239	G	A	231.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=2.02;SOR=0.446;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:143,0,147
chr2	49381253	rs7589810	T	C	697.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=41;ExcessHet=3.0103;FS=1.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-2.090e-01;SOR=1.197;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:706,0,545
chr2	49509777	rs1365862	G	A	195.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,158
chr2	49509859	rs5831033	C	CT	687.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720e-01;DB;DP=22;ExcessHet=6.9897;FS=1.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.516;SOR=0.342;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,11:22:99:283,0,284
chr2	49510173	rs7578654	A	C	4671.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.220e-01;DB;DP=107;ExcessHet=6.9897;FS=1.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-2.420e-01;SOR=0.765;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,56:107:99:1412,0,1396
chr2	50170729	rs1345562	G	C	468.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=14;ExcessHet=3.9794;FS=5.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-1.850e-01;SOR=0.157;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:174,0,197
chr2	50201110	rs9636391	A	G	3493.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;DB;DP=55;ExcessHet=3.9794;FS=1.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=0.912;SOR=0.792;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1709,165,0
chr2	50201383	rs4971883	G	A	526.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.174e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=0.675;SOR=0.663;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:294,0,164
chr2	50246224	rs7571903	C	G	738.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=46;ExcessHet=3.9794;FS=3.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=1.03;SOR=1.220;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,17:46:99:446,0,726
chr2	50246232	rs146211469	TCCAAAACATTA	T	551.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=53;ExcessHet=3.0103;FS=1.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-1.101e+00;SOR=0.941;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,16:53:99:0|1:50246232_TCCAAAACATTA_T:560,0,2369:50246232
chr2	50246249	rs7586095	T	G	1011.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=55;ExcessHet=3.9794;FS=1.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-1.084e+00;SOR=0.914;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,17:55:99:0|1:50246232_TCCAAAACATTA_T:620,0,2384:50246232
chr2	50246637	rs10188520	C	T	100.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=1.65;SOR=0.223;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:108,0,72
chr2	50280283	rs1363050	T	C	1541.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.829;DB;DP=9;ExcessHet=3.0103;FS=3.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.52;ReadPosRankSum=0.526;SOR=2.400;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:378,27,0
chr2	50280338	rs1363049	G	A	2269.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.93;DB;DP=30;ExcessHet=3.9794;FS=2.130;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=2.26;SOR=0.456;VQSLOD=6.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1068,90,0
chr2	50434741	rs17040210	C	T	1457.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=27;ExcessHet=1.5490;FS=1.241;MQ=59.86;MQRankSum=-9.640e-01;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=0.073;SOR=1.002;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,13:27:99:346,0,350
chr2	50434759	rs1715984	C	G	3571.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=33.38;SOR=1.502;VQSLOD=4.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1044,87,0
chr2	50574485	rs13422484	A	G	3562.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.780e-01;DB;DP=122;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-6.400e-01;SOR=0.685;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,46:122:99:1109,0,2091
chr2	50692358	rs1879318	C	T	976.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.422;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.68;ReadPosRankSum=-2.029e+00;SOR=3.334;VQSLOD=18.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr2	50692459	rs12713101	T	A	3322.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.76;DB;DP=44;ExcessHet=3.9794;FS=4.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=1.61;SOR=0.343;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1621,132,0
chr2	50692819	rs10168838	T	G	2769.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.36;SOR=2.955;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:688,57,0
chr2	50693504	rs3052514	AAC	A	6948.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.57;SOR=0.887;VQSLOD=5.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2150,145,0
chr2	50693640	rs375018522	TA	T	693.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=62;ExcessHet=3.0103;FS=5.091;MQ=60.00;MQRankSum=0.00;QD=11.18;ReadPosRankSum=1.07;SOR=0.869;VQSLOD=5.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,31:62:99:702,0,697
chr2	50693952	rs759502	G	A	211.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=3.611;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:50693952_G_A:90,6,0:50693952
chr2	50693953	rs759501	A	T	211.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=3.611;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:50693952_G_A:90,6,0:50693952
chr2	50699192	rs12713103	A	G	254.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.87;SOR=3.912;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:50699192_A_G:45,3,0:50699192
chr2	50699196	rs13029935	G	A	338.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.24;SOR=3.912;VQSLOD=19.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:6:1|1:50699192_A_G:85,6,0:50699192
chr2	50699197	rs3214378	C	CA	338.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.17;SOR=3.912;VQSLOD=4.08;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:6:1|1:50699192_A_G:85,6,0:50699192
chr2	50699205	rs59300829	C	A	338.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.86;SOR=4.407;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:50699192_A_G:85,6,0:50699192
chr2	50699305	rs2075234	T	A	1239.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.28;SOR=3.737;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:543,45,0
chr2	50699758	rs2075233	C	T	221.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=3.912;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	50733860	rs7584062	A	G	2673.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.92;SOR=2.242;VQSLOD=19.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:555,54,0
chr2	50733958	rs7571753	T	C	292.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=5;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=0.120;SOR=2.303;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:164,0,25
chr2	50758309	rs5831131	C	CA	496.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.303;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=0.464;SOR=1.022;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
chr2	50758657	rs2066948	T	C	2108.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DB;DP=27;ExcessHet=3.9794;FS=0.938;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=-6.070e-01;SOR=0.844;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:363,0,397
chr2	50780168	.	G	A	554.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DP=32;ExcessHet=3.0103;FS=1.745;MQ=60.00;MQRankSum=0.00;QD=17.32;ReadPosRankSum=0.627;SOR=1.460;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:563,0,413
chr2	50780219	rs13429627	T	G	674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.637e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=0.422;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:245,0,135
chr2	50966161	rs1713859	G	A	3502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=1.747;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:89:928,89,0
chr2	50966283	rs1546667	C	T	10213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=1.200;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2486,242,0
chr2	51254538	rs13426386	C	G	1642.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=1.21;SOR=0.765;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,24:60:99:703,0,961
chr2	51254901	rs1045874	G	A	11451.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DB;DP=509;ExcessHet=3.9794;FS=2.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=2.12;SOR=0.906;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:265,244:509:99:5804,0,6945
chr2	52929680	rs6726779	T	C	521.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.180e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=-3.250e-01;SOR=0.569;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:96:96,0,212
chr2	52929780	rs6726935	T	G	1637.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.810e-01;DB;DP=19;ExcessHet=3.9794;FS=0.938;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=1.23;SOR=0.570;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:128,0,304
chr2	52929844	rs6545299	G	A	593.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=12;ExcessHet=6.9897;FS=6.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-1.155e+00;SOR=1.863;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:104,0,191
chr2	53832072	rs2357490	C	T	1085.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=1.819;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1102,102,0
chr2	53920931	rs7563054	G	A	316.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=17;ExcessHet=3.0103;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=-7.820e-01;SOR=2.387;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:325,0,186
chr2	53927313	rs112093661	T	TAC	375.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.06;ReadPosRankSum=0.165;SOR=1.473;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:384,0,483
chr2	53955850	rs17521008	C	T	751.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=59;ExcessHet=3.0103;FS=3.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-3.260e-01;SOR=1.375;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,28:59:99:760,0,724
chr2	53956883	rs2302797	T	G	296.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=0.041;SOR=0.556;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:305,0,584
chr2	53956980	rs6714424	C	A	134.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.38;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:33:143,0,33
chr2	53990532	rs13397311	C	T	511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=42;ExcessHet=3.0103;FS=6.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=2.07;SOR=1.845;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:520,0,594
chr2	54014303	rs10181752	A	G	984.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.42;DB;DP=60;ExcessHet=3.0103;FS=4.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-1.110e-01;SOR=1.921;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,28:60:99:993,0,960
chr2	54021679	rs190933696	G	C	110.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-4.310e-01;SOR=1.609;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:119,0,67
chr2	54023247	rs72502136	GT	G	248.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.81;SOR=3.258;VQSLOD=3.40;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:265,30,0
chr2	54023322	rs2692513	C	T	62.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:71,0,29
chr2	54024626	rs2692514	C	T	156.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DB;DP=27;ExcessHet=3.0103;FS=1.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.79;ReadPosRankSum=-2.301e+00;SOR=1.329;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,7:27:99:165,0,532
chr2	54035374	rs2692519	A	G	306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283e+00;DB;DP=17;ExcessHet=3.0103;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=-2.440e-01;SOR=2.387;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:315,0,194
chr2	54035447	rs1127362	A	G	678.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=51;ExcessHet=3.0103;FS=1.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-8.990e-01;SOR=0.458;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,23:51:99:687,0,735
chr2	54035508	rs2287345	G	C	950.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222e+00;DB;DP=85;ExcessHet=3.0103;FS=4.106;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=-1.666e+00;SOR=0.814;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,43:85:99:959,0,1060
chr2	54041983	rs2542571	G	T	821.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e-01;DB;DP=117;ExcessHet=3.0103;FS=4.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.02;ReadPosRankSum=0.773;SOR=1.150;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,42:117:99:830,0,1766
chr2	54042132	rs72377367	CT	C,CTT	254.54	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=1.07;QD=8.78;ReadPosRankSum=0.205;SOR=0.829;VQSLOD=0.508;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,3,4:9:52:106,60,93,52,0,86
chr2	54081923	rs72799239	T	G	376.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-5.740e-01;SOR=0.593;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:385,0,364
chr2	54114221	rs805397	T	C	65.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:73,0,65
chr2	54114864	rs2293361	T	C	130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=0.842;SOR=1.329;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:139,0,61
chr2	54114967	rs805399	G	A	2671.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.850e-01;DB;DP=69;ExcessHet=3.9794;FS=5.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=1.76;SOR=1.231;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,35:69:99:1026,0,1001
chr2	54115845	rs72799248	T	A	731.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e-02;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.530;SOR=0.804;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,34:60:99:740,0,585
chr2	54115904	rs805400	A	G	2063.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=85;ExcessHet=3.9794;FS=3.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.956;SOR=0.626;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,33:85:99:772,0,1292
chr2	54116003	rs805401	C	T	1315.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127e+00;DB;DP=36;ExcessHet=3.9794;FS=3.477;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.704;SOR=0.356;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:396,0,767
chr2	54119870	rs77215245	T	C	150.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DB;DP=24;ExcessHet=3.0103;FS=2.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.26;ReadPosRankSum=0.067;SOR=1.863;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,6:24:99:159,0,529
chr2	54120025	rs805408	A	T	1435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915e+00;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.651;SOR=0.743;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,23:54:99:544,0,885
chr2	54120185	rs1547980	G	A	206.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=0.00;SOR=1.085;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:215,0,130
chr2	54120204	rs805409	A	G	165.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=9;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.674;SOR=0.368;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:96:96,0,212
chr2	54120497	rs805410	G	T	174.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=1.93;SOR=0.693;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	54120591	rs805411	C	T	993.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=33;ExcessHet=3.9794;FS=2.502;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=1.28;SOR=1.237;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:406,0,526
chr2	54120820	rs805412	G	A	4157.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.511e+00;DB;DP=79;ExcessHet=1.5490;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=1.01;SOR=0.709;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2604,237,0
chr2	54121956	rs79436269	T	C	132.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-1.242e+00;SOR=0.412;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:141,0,209
chr2	54122956	rs698856	A	G	2210.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.477e+00;DB;DP=37;ExcessHet=3.9794;FS=1.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=0.254;SOR=0.498;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1176,111,0
chr2	54122984	rs698857	C	T	680.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.606;SOR=0.739;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:334,0,344
chr2	54125258	rs805416	T	C	547.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=8;ExcessHet=3.9794;FS=4.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.80;ReadPosRankSum=0.414;SOR=0.144;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:65:173,0,65
chr2	54125495	rs805417	T	C	859.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=29;ExcessHet=3.9794;FS=2.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=1.07;SOR=1.148;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:518,0,211
chr2	54126759	rs805422	C	A	108.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.06;SOR=1.609;VQSLOD=19.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:120,12,0
chr2	54127041	rs805423	C	T	4285.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.244e+00;DB;DP=97;ExcessHet=1.5490;FS=7.327;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=0.797;SOR=0.618;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2851,289,0
chr2	54131154	rs17045370	C	T	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=53;ExcessHet=3.0103;FS=4.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.95;ReadPosRankSum=0.326;SOR=0.257;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,15:53:99:324,0,1017
chr2	54131495	rs805428	C	A	103.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:111,0,32
chr2	54133744	rs805316	T	C	596.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DB;DP=48;ExcessHet=3.0103;FS=4.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.96;SOR=1.463;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:605,0,652
chr2	54135429	rs805319	G	C	1509.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270e+00;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.445;SOR=0.783;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:587,0,535
chr2	54144448	rs805325	T	C	65.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=7;ExcessHet=3.0103;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=1.37;SOR=0.916;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:74:74,0,77
chr2	54147817	rs805329	G	C	99.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=1.47;SOR=0.446;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:107,0,130
chr2	54148331	rs805330	C	A	885.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.612e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.68;ReadPosRankSum=0.256;SOR=1.022;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:619,48,0
chr2	54148407	rs809280	G	A	149.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.72;SOR=3.258;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	54150237	rs3213775	A	G	478.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DB;DP=45;ExcessHet=3.0103;FS=4.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-1.690e+00;SOR=0.488;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,19:45:99:487,0,702
chr2	54152927	rs2302879	T	C	1422.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=-6.930e-01;SOR=0.606;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:733,0,660
chr2	54153341	rs2949810	T	C	60.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:69,0,63
chr2	54155240	rs805349	A	G	1617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.750e-01;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-1.569e+00;SOR=0.709;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,35:63:99:766,0,599
chr2	54158957	rs805352	C	T	1291.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=1.50;SOR=0.859;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:644,0,285
chr2	54159999	rs3731973	G	A	611.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DB;DP=35;ExcessHet=3.0103;FS=3.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=-1.350e-01;SOR=1.426;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:620,0,332
chr2	54160059	rs3731972	T	C	248.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.350e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-2.550e-01;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:257,0,215
chr2	54161885	rs805357	G	T	1393.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=54;ExcessHet=3.9794;FS=8.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.665;SOR=0.275;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:598,0,824
chr2	54162022	rs805358	C	T	543.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.965e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.22;ReadPosRankSum=0.179;SOR=2.303;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr2	54163034	rs201536391	G	GT	68.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.01;ReadPosRankSum=0.862;SOR=0.193;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,3:5:37:63,0,37
chr2	54163724	rs146083561	C	CAAATA	73.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:63:81,0,63
chr2	54164848	rs805360	G	T	252.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=1.863;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:267,24,0
chr2	54176585	rs77741355	CTTT	C	73.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.43;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:2:81,0,2
chr2	54342955	rs2287641	G	A	570.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.040e-01;DB;DP=66;ExcessHet=3.0103;FS=9.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=0.855;SOR=2.004;VQSLOD=17.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,23:66:99:579,0,1223
chr2	54342974	rs2287640	A	T	379.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;DB;DP=56;ExcessHet=3.0103;FS=11.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.77;ReadPosRankSum=2.95;SOR=2.276;VQSLOD=14.52;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:38,18:56:99:388,0,926
chr2	54343012	rs7573491	C	A	1478.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.26;DB;DP=41;ExcessHet=1.5490;FS=2.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-2.461e+00;SOR=0.387;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1352,123,0
chr2	54343108	rs9808326	G	C	408.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=2.670;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:425,36,0
chr2	54362437	rs2357954	T	C	1040.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.120e-01;DB;DP=17;ExcessHet=1.5490;FS=3.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=1.19;SOR=0.239;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:520,51,0
chr2	54362645	rs78531993	T	C	713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=62;ExcessHet=3.0103;FS=2.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=2.24;SOR=0.531;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:722,0,827
chr2	54362726	rs13417064	A	G	502.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=48;ExcessHet=3.0103;FS=6.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-2.448e+00;SOR=1.641;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:511,0,677
chr2	54366096	rs2287639	A	G	119.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=1.609;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:134,12,0
chr2	54482964	rs843704	C	T	6979.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=293;ExcessHet=3.9794;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.640;SOR=0.613;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:157,136:293:99:3622,0,4106
chr2	54483443	rs843703	T	C	404.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-8.700e-02;SOR=0.892;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:178,0,213
chr2	54494370	rs865816	A	G	3179.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=3.611;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:864,72,0
chr2	54558407	rs79551394	G	A	507.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=28;ExcessHet=3.0103;FS=4.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=1.39;SOR=1.871;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:516,0,230
chr2	54571147	rs3813463	C	T	185.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=-1.150e+00;SOR=2.584;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:78,0,33
chr2	54587596	rs2280718	C	T	2212.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DB;DP=41;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=-1.430e-01;SOR=0.767;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:549,0,504
chr2	54608883	rs11677654	C	A	1062.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=0.804;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1079,108,0
chr2	54756740	rs1802889	C	T	7874.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.249;DB;DP=101;ExcessHet=3.0103;FS=9.431;MQ=59.54;MQRankSum=10.02;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=-2.099e+00;SOR=0.795;VQSLOD=-3.595e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,96:101:78:2811,78,0
chr2	54785705	rs12987967	T	C	75.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=0.908;SOR=1.270;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:84:84,0,249
chr2	54839276	rs3796014	A	G	19345.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=167;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=0.797;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,167:167:99:5497,500,0
chr2	54843214	rs3796012	A	G	192.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:57:201,0,57
chr2	54844911	rs72618664	G	A	933.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DB;DP=34;ExcessHet=3.9794;FS=5.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.29;SOR=0.221;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:417,0,495
chr2	54844926	rs7569127	T	G	394.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-8.500e-01;SOR=0.446;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:403,0,390
chr2	54844995	rs7608414	G	A	384.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=-4.630e-01;SOR=1.061;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,230
chr2	54845117	rs12713273	T	G	167.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.087;SOR=2.636;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:176,0,206
chr2	54848494	rs151162357	A	ACC	681.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190e-01;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.47;ReadPosRankSum=-7.790e-01;SOR=0.776;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,17:39:99:0|1:54848494_A_ACC:690,0,1669:54848494
chr2	54848495	rs368638007	G	C	681.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.03;ReadPosRankSum=-1.088e+00;SOR=0.859;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,18:40:99:0|1:54848494_A_ACC:690,0,1669:54848494
chr2	54848728	rs12713274	A	G	649.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;DB;DP=28;ExcessHet=3.9794;FS=2.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.541;SOR=1.329;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:241,0,500
chr2	54855137	rs2971887	T	C	8977.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.27;SOR=2.491;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2818,257,0
chr2	54855454	rs17046036	G	A	492.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=-7.220e-01;SOR=0.846;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:501,0,418
chr2	54858214	rs61730127	A	G	2451.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DB;DP=196;ExcessHet=3.0103;FS=1.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-1.900e-02;SOR=0.787;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,93:196:99:2460,0,2651
chr2	54858511	rs1052788	C	T	3542.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=343;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=-1.322e+00;SOR=0.686;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:196,147:343:99:3551,0,4865
chr2	54858664	rs2229503	C	T	1892.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.780e-01;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-1.100e-01;SOR=0.655;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,68:150:99:1901,0,2368
chr2	54858886	rs35619551	C	T	96.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=-6.320e-01;SOR=1.112;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:105,0,237
chr2	54871277	rs2271322	T	A	302.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.19;SOR=4.407;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	54877146	rs3739109	A	G	249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293e+00;DB;DP=22;ExcessHet=3.0103;FS=1.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.164;SOR=0.207;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:258,0,360
chr2	54882091	rs142851449	ACCATCAGTTTCTTTCAAGG	A	108.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=0.524;SOR=0.693;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,425
chr2	54882381	rs2271329	G	A	1768.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DB;DP=146;ExcessHet=3.0103;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.516;SOR=0.613;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,77:146:99:1777,0,1569
chr2	54884870	rs966003	C	T	2521.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=20;ExcessHet=3.0103;FS=1.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.13;ReadPosRankSum=0.495;SOR=1.276;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:355,0,223
chr2	54885314	rs2941586	A	T	1851.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.63;POSITIVE_TRAIN_SITE;QD=24.65;SOR=7.658;VQSLOD=6.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:565,42,0
chr2	54886347	rs1052820	G	A	1089.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DB;DP=100;ExcessHet=3.0103;FS=2.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-3.100e-02;SOR=0.963;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,48:100:99:1098,0,1213
chr2	54893237	rs3817163	C	T	43.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=0.00;SOR=0.132;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:52:52,0,233
chr2	54895817	rs201990044	AT	A	130.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.27;ReadPosRankSum=-6.100e-02;SOR=0.734;VQSLOD=5.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:73:73,0,290
chr2	54952115	rs143216688	C	T	176.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.970e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.63;ReadPosRankSum=0.411;SOR=1.179;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:185,0,131
chr2	55040426	rs2631840	A	G	12904.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=0.732;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4092,408,0
chr2	55043798	rs2578711	G	C	531.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.230e-01;DB;DP=12;ExcessHet=3.9794;FS=2.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-6.280e-01;SOR=0.200;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:250,0,172
chr2	55071101	.	TTGTG	T,TTGTGTGTGTGTGTGTG	3929.14	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.424;DP=35;ExcessHet=3.0103;FS=1.175;MQ=59.80;MQRankSum=-1.547e+00;QD=33.02;ReadPosRankSum=-1.061e+00;SOR=0.485;VQSLOD=0.096;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,24,9:35:99:1369,347,340,1028,0,1002
chr2	55074844	rs150714442	C	T	461.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005e+00;DB;DP=35;ExcessHet=3.0103;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.496;SOR=0.283;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:470,0,567
chr2	55074978	rs2116491	G	A	701.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.13;SOR=5.892;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr2	55077061	rs12713278	A	G	1205.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.24;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.80;ReadPosRankSum=-7.560e-01;SOR=0.726;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:901,66,0
chr2	55077579	rs12713279	G	A	305.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.652;SOR=0.804;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	55093842	rs1961245	G	A	560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-7.490e-01;SOR=0.749;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:220,0,224
chr2	55118078	rs6729866	T	G	1327.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.291e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=2.67;SOR=0.904;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:392,0,280
chr2	55119920	rs17417862	A	G	1320.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.96;ReadPosRankSum=1.41;SOR=0.859;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:215,0,283
chr2	55121851	rs997198	T	A	860.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.454e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=0.589;SOR=1.885;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:15:262,0,15
chr2	55121930	rs998230	C	G	1158.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=36;ExcessHet=3.9794;FS=3.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.930;SOR=1.060;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:343,0,730
chr2	55122589	rs6545454	A	G	2523.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.820e-01;DB;DP=72;ExcessHet=6.9897;FS=1.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.106;SOR=0.571;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,29:72:99:772,0,1187
chr2	55130047	rs186381386	C	A	565.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.96;DB;DP=40;ExcessHet=3.0103;FS=12.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-2.700e-02;SOR=3.056;VQSLOD=11.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:574,0,619
chr2	55138272	rs2304688	G	A	1085.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=18;ExcessHet=6.9897;FS=5.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=-2.370e-01;SOR=0.120;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:190,0,409
chr2	55138302	rs2304686	G	A	588.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=0.908;SOR=0.407;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:129,0,241
chr2	55138379	rs3816191	T	C	145	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=-9.670e-01;SOR=0.941;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr2	55143641	rs10633469	T	TATC	150.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:45:81,0,45
chr2	55180965	rs4671998	G	A	3454.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.44;SOR=6.115;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1386,108,0
chr2	55181022	.	TA	T	910.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DP=71;ExcessHet=6.9897;FS=7.124;MQ=59.99;MQRankSum=0.00;QD=4.79;ReadPosRankSum=-3.220e-01;SOR=0.309;VQSLOD=4.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:42,26:71:99:382,0,822
chr2	55181351	rs4671999	T	C	3409.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.395e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.72;ReadPosRankSum=-1.273e+00;SOR=3.631;VQSLOD=16.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1162,93,0
chr2	55181382	rs4672001	G	A	2055.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.215;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.12;ReadPosRankSum=-8.050e-01;SOR=3.056;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:692,51,0
chr2	55186229	rs12623902	T	C	4637.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.095;DB;DP=64;ExcessHet=3.0103;FS=2.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=-2.040e-01;SOR=0.542;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1942,192,0
chr2	55186394	rs17346629	A	C	3359.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.960e-01;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=0.170;SOR=0.653;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1074,105,0
chr2	55187297	rs58866010	A	AG	7566.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=1.107;VQSLOD=5.40;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2639,244,0
chr2	55189685	rs75479836	C	T	1444.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DB;DP=87;ExcessHet=3.9794;FS=0.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.616;SOR=0.804;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,35:87:99:798,0,1284
chr2	55196956	rs2580764	G	A	332.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.77;ReadPosRankSum=-1.345e+00;SOR=1.329;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:246,18,0
chr2	55200038	rs10610251	CAGAT	C	439.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.090;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.87;ReadPosRankSum=0.992;SOR=1.371;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	55200800	rs2255112	T	G	2404.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.746;DB;DP=50;ExcessHet=1.5490;FS=9.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=-1.931e+00;SOR=0.209;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1749,150,0
chr2	55200918	.	G	GTCTATTACA	1100.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379e+00;DP=63;ExcessHet=3.0103;FS=0.971;MQ=60.00;MQRankSum=0.00;QD=17.46;ReadPosRankSum=-4.450e-01;SOR=0.922;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,27:63:99:0|1:55200918_G_GTCTATTACA:1109,0,6573:55200918
chr2	55200920	.	G	GGGAGTGA	1100.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478e+00;DP=65;ExcessHet=3.0103;FS=2.092;MQ=60.00;MQRankSum=0.00;QD=16.93;ReadPosRankSum=-8.250e-01;SOR=1.071;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,29:65:99:0|1:55200918_G_GTCTATTACA:1109,0,6573:55200918
chr2	55201038	rs2255026	C	T	3353.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=2.350;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:91:1033,91,0
chr2	55214618	rs2580769	A	C	2750.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=36;ExcessHet=3.0103;FS=2.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=0.938;SOR=0.482;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1231,108,0
chr2	55214912	rs2580770	C	G	1063.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=4.332;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr2	55404794	rs14026	G	A	1050.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601e+00;DB;DP=47;ExcessHet=3.9794;FS=0.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=1.52;SOR=0.816;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:513,0,681
chr2	55404925	rs6545477	C	T	2202.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050e+00;DB;DP=53;ExcessHet=6.9897;FS=1.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-9.000e-02;SOR=0.584;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,26:53:99:609,0,733
chr2	55405088	rs34877029	C	CA	120.47	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:21:49,0,21
chr2	55407459	rs6715694	C	T	627.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.19;SOR=5.549;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr2	55407754	rs6716066	C	T	10133.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=0.711;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2990,302,0
chr2	55407935	rs10183953	G	A	2514.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=4.615;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:655,54,0
chr2	55436001	.	CTTTT	C	263.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=0.366;SOR=1.981;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:14:133,0,14
chr2	55436488	rs139842520	GA	G	565.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742e+00;DB;DP=13;ExcessHet=6.9897;FS=6.307;MQ=60.00;MQRankSum=0.00;QD=12.04;ReadPosRankSum=-7.060e-01;SOR=0.083;VQSLOD=4.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,6:13:99:148,0,178
chr2	55436934	rs9677948	G	A	4364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=90;ExcessHet=6.9897;FS=0.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.033;SOR=0.629;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,52:90:99:1491,0,1060
chr2	55439667	rs6723870	C	G	1282.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.83;SOR=6.869;VQSLOD=24.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:524,36,0
chr2	55439963	rs2118283	C	A	6442.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=1.951;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1906,174,0
chr2	55444739	rs2864819	C	T	70.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.57;SOR=2.303;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	55449256	rs1437389	G	A	591.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.79;SOR=5.421;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr2	55460605	rs6737227	A	T	1677.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=-2.300e-01;SOR=1.211;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:766,60,0
chr2	55461570	rs2576723	A	T	122.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=0.693;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	55461823	rs2576722	T	A	3372.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.089e+00;DB;DP=41;ExcessHet=3.0103;FS=0.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=-2.259e+00;SOR=0.888;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1341,123,0
chr2	55464785	rs11442356	C	CT	92.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.967;SOR=1.863;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:41,6,0
chr2	55470115	rs11357	C	T	1849.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=19;ExcessHet=3.0103;FS=8.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=-1.334e+00;SOR=1.839;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:678,57,0
chr2	55471407	rs2589083	T	C	6375.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=0.795;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1984,204,0
chr2	55473386	rs3833559	CAT	C	3980.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.444;DB;DP=43;ExcessHet=3.0103;FS=3.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.92;ReadPosRankSum=1.20;SOR=1.392;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1930,129,0
chr2	55473681	rs2589081	A	C	1970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.17;SOR=4.407;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:492,39,0
chr2	55480993	rs2864826	C	T	353.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.21;SOR=4.615;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	55481322	rs2230370	T	A	611.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=1.23;SOR=0.662;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:620,0,794
chr2	55481486	rs10678751	T	TATA	823.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.16;SOR=2.833;VQSLOD=6.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:6:82,6,0
chr2	55489629	rs2589093	T	C	1897.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.814;DB;DP=17;ExcessHet=3.0103;FS=2.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.72;ReadPosRankSum=-2.710e-01;SOR=1.839;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:698,51,0
chr2	55490745	.	CA	C	168.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DP=12;ExcessHet=6.9897;FS=1.619;MQ=60.00;MQRankSum=0.00;QD=4.44;ReadPosRankSum=0.425;SOR=1.165;VQSLOD=5.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,2:12:37:37,0,134
chr2	55490819	rs1056445	G	T	4480.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=-7.360e-01;SOR=0.720;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1444,128,0
chr2	55491007	.	G	GA	175.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.62;ReadPosRankSum=0.347;SOR=0.875;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,9:23:99:184,0,308
chr2	55518742	rs2249856	T	C	1491.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.93;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.552;SOR=0.814;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:503,45,0
chr2	55522422	rs2589110	A	G	6464.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.68;SOR=0.749;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1954,171,0
chr2	55523308	rs140112269	C	CAA	1544.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.430e-01;DB;DP=13;ExcessHet=3.0103;FS=1.600;MQ=60.00;MQRankSum=0.00;QD=32.85;ReadPosRankSum=-4.440e-01;SOR=0.370;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:55523308_C_CAA:550,39,0:55523308
chr2	55523309	rs28665443	C	A	1651.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.571;DB;DP=11;ExcessHet=3.0103;FS=1.554;MQ=60.00;MQRankSum=0.00;QD=30.35;ReadPosRankSum=-3.550e-01;SOR=0.461;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:39:1|1:55523308_C_CAA:550,39,0:55523308
chr2	55527108	rs1545121	G	A	4545.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.750e-01;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=0.497;SOR=0.676;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1942,188,0
chr2	55528257	rs2576699	A	C	5143.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.52;SOR=1.625;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1094,93,0
chr2	55528514	rs2589117	A	G	390.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.88;SOR=4.804;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr2	55528548	rs142563101	CAACTAGAAACTGG	C	207.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.43;SOR=3.611;VQSLOD=4.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	55530527	.	CTT	C	49.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.40;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:40:57,0,40
chr2	55559651	rs368125112	CA	C	320.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DB;DP=33;ExcessHet=3.9794;FS=7.626;MQ=59.87;MQRankSum=0.00;QD=5.25;ReadPosRankSum=0.248;SOR=1.751;VQSLOD=3.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,5:33:10:10,0,558
chr2	55599286	rs3111410	G	A	463.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.96;ReadPosRankSum=-2.100e-01;SOR=0.275;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:183,18,0
chr2	55599655	rs3111411	G	A	4122.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.838;DB;DP=39;ExcessHet=3.0103;FS=0.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=1.82;SOR=0.630;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,37:39:67:1047,67,0
chr2	55749085	rs12992408	T	G	350.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e+00;DB;DP=10;ExcessHet=3.9794;FS=12.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=1.08;SOR=0.026;VQSLOD=16.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:91:156,0,91
chr2	55750738	rs3748944	T	C	48.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.93;ReadPosRankSum=0.366;SOR=0.223;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:56:56,0,179
chr2	55760940	rs4671248	G	T	4879.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=0.451;SOR=0.736;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1489,138,0
chr2	55762957	rs3762513	C	T	2453.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DB;DP=38;ExcessHet=1.5490;FS=1.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.37;ReadPosRankSum=-1.080e+00;SOR=0.970;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,22:38:99:576,0,356
chr2	55764456	rs34013926	A	G	38	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.00;SOR=0.693;VQSLOD=15.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	55764511	.	GA	G	33.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=6.68;ReadPosRankSum=-5.240e-01;SOR=0.061;VQSLOD=5.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:42:42,0,70
chr2	55764754	rs11280083	AATATGAATAC	A	1170.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.551e+00;DB;DP=18;ExcessHet=1.5490;FS=1.496;MQ=60.00;MQRankSum=0.00;QD=30.02;ReadPosRankSum=-9.520e-01;SOR=1.140;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,7:18:99:241,0,1229
chr2	55771050	rs3816489	C	G	1163.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.185;DB;DP=12;ExcessHet=3.0103;FS=5.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=-1.083e+00;SOR=2.143;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:454,36,0
chr2	55771161	rs1045910	A	G	2994.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=0.780;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:92:918,92,0
chr2	55776793	rs3748945	G	A	226.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=2.584;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:162,15,0
chr2	55785692	rs4671249	T	C	623.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=2.833;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:174,15,0
chr2	55800992	rs4671250	G	T	733.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.93;ReadPosRankSum=-1.890e-01;SOR=1.802;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr2	55804281	rs3791654	G	A	565.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=0.733;SOR=0.665;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:276,0,255
chr2	55805172	rs17798852	A	C	55.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.645e+00;SOR=0.446;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,114
chr2	55805440	rs2903704	T	C	3952.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.94;SOR=1.294;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1271,114,0
chr2	55806644	rs34837613	A	AC	439.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:82:82,0,230
chr2	55806924	rs35257458	CAT	C	1273.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DB;DP=36;ExcessHet=3.9794;FS=1.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=-6.400e-02;SOR=0.988;VQSLOD=7.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,21:36:99:837,0,602
chr2	55807056	rs34952773	TA	T	45.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:54:54,0,86
chr2	55808969	rs1975486	C	T	2189.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.10;SOR=4.029;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:437,39,0
chr2	55812061	rs4312532	A	G	2696.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.668e+00;DB;DP=41;ExcessHet=1.5490;FS=4.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=1.30;SOR=0.249;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:498,0,666
chr2	55812073	rs7594279	T	G	3077.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299e+00;DB;DP=56;ExcessHet=1.5490;FS=6.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=-1.167e+00;SOR=1.688;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:843,0,721
chr2	55842424	rs70954138	CTTTT	C	331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=1.59;SOR=1.329;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,289
chr2	55844105	rs782593	C	T	4514.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.42;SOR=6.630;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1397,105,0
chr2	55844445	rs782594	T	C	4816.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.11;DB;DP=85;ExcessHet=1.5490;FS=11.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=2.73;SOR=2.027;VQSLOD=15.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,37:85:99:1347,0,1343
chr2	55863360	rs35916020	T	TA	960.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478e+00;DB;DP=21;ExcessHet=1.5490;FS=3.161;MQ=60.00;MQRankSum=0.00;QD=17.16;ReadPosRankSum=0.709;SOR=0.343;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,7:21:99:124,0,326
chr2	55864842	.	CAGTT	C	802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.92;ReadPosRankSum=-9.100e-01;SOR=0.978;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,21:35:99:811,0,790
chr2	55867938	rs34679603	A	G	515.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=22;ExcessHet=3.9794;FS=7.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.396;SOR=2.033;VQSLOD=19.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:270,0,332
chr2	55871932	rs71393504	AT	A	80.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.460e-01;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.14;ReadPosRankSum=0.669;SOR=0.543;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,6:25:82:82,0,419
chr2	55873301	rs2627776	T	A	715.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.940e-01;DB;DP=11;ExcessHet=1.5490;FS=2.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=1.60;SOR=0.243;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:56:56,0,283
chr2	55881816	rs782569	C	T	852.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=6.184;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	55883317	rs2627765	G	T	1351.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=24;ExcessHet=1.5490;FS=1.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=1.07;SOR=1.094;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:319,0,373
chr2	55883713	rs2586951	C	A	359.41	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:2,4:6:9:1|1:55883713_C_A:166,9,0:55883713
chr2	55883733	rs17800203	C	A	155.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:2,2:4:3:1|1:55883713_C_A:84,3,0:55883713
chr2	55889062	rs782604	G	A	1919.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.50;SOR=2.480;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:302,27,0
chr2	55889466	rs13013133	G	A	203.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.440e-01;DB;DP=2;ExcessHet=1.5490;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=-2.189e+00;SOR=3.126;VQSLOD=17.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	55894090	rs13009649	A	G	987.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.00;SOR=0.639;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,19:26:99:516,0,222
chr2	55894243	rs76693423	G	A	1454.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-01;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=1.28;SOR=0.665;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,37:85:99:0|1:55894243_G_A:1463,0,2667:55894243
chr2	55894247	rs782637	T	C	5188.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e-01;DB;DP=86;ExcessHet=1.5490;FS=1.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=0.265;SOR=0.819;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,39:86:99:0|1:55894243_G_A:1469,0,2624:55894243
chr2	55894428	rs12329050	G	A	730.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.11;ReadPosRankSum=0.361;SOR=1.981;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:129,0,243
chr2	55894456	rs114135308	G	A	301.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DB;DP=6;ExcessHet=3.9794;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=0.189;SOR=1.981;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,112
chr2	55895305	rs12993839	T	C	274.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.50;ReadPosRankSum=-1.400e-01;SOR=2.093;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:58:0|1:55895305_T_C:282,0,58:55895305
chr2	55895321	rs782636	T	C	825.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.00;SOR=3.716;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:55895305_T_C:324,24,0:55895305
chr2	55898203	rs782633	A	G	874.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-1.195e+00;SOR=0.557;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:145,0,178
chr2	55898290	rs782632	C	G	2010.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001e+00;DB;DP=44;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=0.764;SOR=0.636;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:437,0,404
chr2	55898929	rs2627771	A	G	2224.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=6.518;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:55898929_A_G:737,51,0:55898929
chr2	55898930	rs2627772	C	T	1578.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.066e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.13;ReadPosRankSum=0.946;SOR=3.209;VQSLOD=18.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,14:17:71:0|1:55898929_A_G:470,0,71:55898929
chr2	55899228	rs782631	A	T	3148.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.60;SOR=2.546;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1318,117,0
chr2	55900283	rs782629	A	G	1707.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=39;ExcessHet=1.5490;FS=2.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=-9.860e-01;SOR=0.949;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:459,0,536
chr2	55900459	rs2627773	A	G	391.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=1.5490;FS=2.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=0.120;SOR=0.191;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:119,0,177
chr2	55912120	rs782572	T	C	2233.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=0.260;SOR=0.648;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,30:53:99:813,0,550
chr2	55914573	rs11386711	C	CA	120.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.95;ReadPosRankSum=-7.030e-01;SOR=0.859;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:56:56,0,115
chr2	55914621	rs809732	T	C	831.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=0.341;SOR=0.495;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:298,0,247
chr2	55915155	rs782576	T	A	555.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.35;SOR=3.126;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	56209879	rs6756818	T	A	58.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=1.28;SOR=0.446;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,112
chr2	56216052	rs10865292	G	A	4645.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150e+00;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=0.373;SOR=0.777;VQSLOD=6.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1862,197,0
chr2	56216320	rs11903947	C	A	224.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=-9.920e-01;SOR=1.402;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:87:233,0,87
chr2	56411817	rs35587531	C	T	5222.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.00;DB;DP=87;ExcessHet=3.9794;FS=0.481;MQ=60.00;MQRankSum=0.00;QD=19.20;ReadPosRankSum=0.528;SOR=0.760;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2831,261,0
chr2	56420006	rs60028731	A	T	5961.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=439;ExcessHet=3.0103;FS=1.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.315;SOR=0.790;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:213,226:439:99:5970,0,5275
chr2	56420296	rs75743618	C	T	4168.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=339;ExcessHet=3.0103;FS=2.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-8.380e-01;SOR=0.843;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:174,165:339:99:4177,0,4443
chr2	58275666	rs986512	G	A	5441.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.764e+00;DB;DP=64;ExcessHet=3.0103;FS=1.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=-5.560e-01;SOR=0.568;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1868,192,0
chr2	58316814	rs1051061	A	G	816.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=69;ExcessHet=3.0103;FS=4.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-1.563e+00;SOR=1.317;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,29:69:99:825,0,1041
chr2	58350504	rs7558007	A	G	874.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.19;SOR=6.273;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:316,24,0
chr2	58350571	rs2043890	G	A	308.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.82;SOR=4.407;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	58362161	rs11678320	G	A	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.640e-01;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.857e+00;SOR=0.412;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:354,0,473
chr2	58387000	rs3732136	C	T	1921.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=26;ExcessHet=3.9794;FS=5.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=-5.670e-01;SOR=1.609;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:445,0,485
chr2	58388696	rs848291	A	G	7376.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=-6.470e-01;SOR=0.688;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,46:97:99:1165,0,1288
chr2	58390538	rs10445895	T	C	620.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=30;ExcessHet=3.0103;FS=1.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=0.915;SOR=1.244;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,16:30:99:0|1:58390538_T_C:629,0,669:58390538
chr2	58390547	rs10445896	G	A	642.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=38;ExcessHet=3.0103;FS=1.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=2.24;SOR=0.941;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,18:38:99:0|1:58390538_T_C:651,0,798:58390538
chr2	58453930	rs79588315	A	G	526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.259e+00;DB;DP=46;ExcessHet=3.0103;FS=4.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.909;SOR=0.283;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,26:46:99:535,0,555
chr2	59230996	rs6545711	A	C	903.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=18;ExcessHet=1.5490;FS=7.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=3.58;SOR=2.985;VQSLOD=16.27;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:649,54,0
chr2	59246730	.	CTT	CT,C	766.87	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.119;DP=15;ExcessHet=3.9794;FS=2.599;MQ=60.00;MQRankSum=0.00;QD=11.11;ReadPosRankSum=-1.453e+00;SOR=1.158;VQSLOD=5.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,11,3:15:35:326,52,35,230,0,256
chr2	59285726	rs147407049	C	A	489.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e-01;DB;DP=27;ExcessHet=3.0103;FS=1.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.309;SOR=0.283;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,18:27:99:498,0,202
chr2	60768978	rs2665668	G	A	1093.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.768e+00;DB;DP=17;ExcessHet=3.9794;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=0.691;SOR=0.418;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:652,51,0
chr2	60773687	rs67861577	AAC	A	305.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.49;ReadPosRankSum=0.144;SOR=1.609;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr2	60780650	rs113296120	G	GGAGA	68.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=30.62;SOR=1.609;VQSLOD=4.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:6:79,6,0
chr2	60983473	rs180891538	G	C	356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=0.169;SOR=0.693;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,13:38:99:365,0,661
chr2	60997387	rs12104783	G	A	543.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750e-01;DB;DP=8;ExcessHet=3.9794;FS=6.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=-4.890e-01;SOR=2.683;VQSLOD=19.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:19:268,0,19
chr2	60997770	rs10187671	T	A	835.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=26;ExcessHet=3.9794;FS=2.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=0.826;SOR=1.588;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,17:26:99:0|1:60997760_T_C:580,0,250:60997760
chr2	61007782	rs10496089	A	G	7081.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=64;ExcessHet=3.0103;FS=0.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=0.458;SOR=0.620;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1945,192,0
chr2	61008036	rs3845814	C	T	4316.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.15;SOR=5.117;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:883,66,0
chr2	61009699	rs34284101	GA	G	356.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.26;ReadPosRankSum=1.61;SOR=1.863;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:113,12,0
chr2	61009813	rs67779326	T	TTA	430.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=59.68;MQRankSum=0.00;QD=10.49;ReadPosRankSum=2.13;SOR=0.909;VQSLOD=5.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,4:25:99:205,0,565
chr2	61009909	rs10197672	C	T	1138.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=41;ExcessHet=3.9794;FS=0.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.364;SOR=0.826;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:485,0,550
chr2	61014952	rs4672404	A	G	1485.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.404e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.77;ReadPosRankSum=-7.900e-01;SOR=0.976;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:327,24,0
chr2	61018788	rs11695223	C	T	475.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=0.00;SOR=0.569;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,139
chr2	61020553	rs10084353	A	G	37	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.50;SOR=0.693;VQSLOD=15.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	61021349	rs11125855	A	G	492.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.687;SOR=0.693;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:101,0,178
chr2	61024048	rs13398594	G	A	194.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-1.890e-01;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:99,0,114
chr2	61118739	rs10185028	A	G	188.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=-1.930e+00;SOR=1.179;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:95:197,0,95
chr2	61121492	rs842644	G	A	2161.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.384e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.88;ReadPosRankSum=0.212;SOR=1.473;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:641,48,0
chr2	61128268	rs6707682	G	A	335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.94;ReadPosRankSum=0.102;SOR=0.804;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,10:12:99:0|1:61128268_G_A:344,0,109:61128268
chr2	61128284	rs2115592	T	C	531.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=7;ExcessHet=3.9794;FS=16.435;MQ=60.00;MQRankSum=0.00;QD=24.14;ReadPosRankSum=0.800;SOR=5.105;VQSLOD=9.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:99:0|1:61128268_G_A:202,0,124:61128268
chr2	61175312	rs12479056	T	C	4275.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=154;ExcessHet=3.9794;FS=0.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-2.720e-01;SOR=0.775;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,83:154:99:2060,0,1908
chr2	61187415	rs67927699	G	C	282.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.60;ReadPosRankSum=1.01;SOR=1.609;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:182,0,151
chr2	61191995	rs55776317	G	C	197.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=1.10;SOR=1.230;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:144,0,154
chr2	61298684	rs200693095	CA	C	394.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;DB;DP=17;ExcessHet=6.9897;FS=2.785;MQ=59.95;MQRankSum=0.00;QD=6.81;ReadPosRankSum=-7.590e-01;SOR=1.205;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,4:17:47:47,0,222
chr2	61300556	rs368466121	CT	C	55.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.361;QD=1.02;ReadPosRankSum=1.15;SOR=0.736;VQSLOD=0.185;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,8:54:64:64,0,1088
chr2	61304002	rs1729657	A	G	2299.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=30;ExcessHet=3.9794;FS=1.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=-3.950e-01;SOR=0.572;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:457,0,416
chr2	61304377	rs10172306	A	T	319.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.02;ReadPosRankSum=-1.795e+00;SOR=2.494;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:48:328,0,48
chr2	61308517	rs1177295	A	G	1948.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.380e-01;DB;DP=19;ExcessHet=1.5490;FS=4.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.66;ReadPosRankSum=-4.600e-02;SOR=1.431;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:75:75,0,345
chr2	61349446	rs1177284	G	A	2432.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.642e+00;DB;DP=21;ExcessHet=3.9794;FS=1.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=0.309;SOR=0.488;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:254,0,456
chr2	61384906	rs7558954	T	C	406.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.226;SOR=0.507;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:177,0,181
chr2	61385100	rs1665258	G	A	3376.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130e-01;DB;DP=102;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=0.993;SOR=0.671;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,51:102:99:0|1:61385100_G_A:1957,0,2765:61385100
chr2	61385105	rs1729671	G	C	3342.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=98;ExcessHet=3.9794;FS=1.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=1.23;SOR=0.627;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,51:98:99:0|1:61385100_G_A:1949,0,2743:61385100
chr2	61385248	rs1177309	A	G	1861.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=67;ExcessHet=3.9794;FS=1.357;MQ=59.99;MQRankSum=1.26;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.019;SOR=0.836;VQSLOD=2.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,29:67:99:732,0,1002
chr2	61389737	rs1729674	T	G	1000.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=44;ExcessHet=3.9794;FS=4.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=1.15;SOR=1.321;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,18:44:99:509,0,724
chr2	61389799	rs1729673	G	A	770.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650e-01;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.694;SOR=0.824;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:323,0,509
chr2	61404452	rs199502568	G	GCGCGTCCC	358.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.9794;FS=2.932;MQ=60.00;MQRankSum=0.00;QD=29.86;ReadPosRankSum=1.53;SOR=0.175;VQSLOD=5.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,153
chr2	61404514	rs112583316	G	A	289.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=17;ExcessHet=3.9794;FS=13.752;MQ=60.00;MQRankSum=0.00;QD=9.97;ReadPosRankSum=1.36;SOR=0.019;VQSLOD=13.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:132,0,349
chr2	61404931	rs2600667	A	T	317.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=-4.640e-01;SOR=1.244;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:64:191,0,64
chr2	61412559	rs777585	C	T	791.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=1.81;SOR=1.765;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,102
chr2	61413723	rs1809028	A	G	8917.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.160e-01;DB;DP=74;ExcessHet=3.0103;FS=0.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=-1.591e+00;SOR=0.627;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,44:74:99:1238,0,766
chr2	61415378	rs188614804	T	G	430.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DB;DP=33;ExcessHet=3.0103;FS=10.976;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=-1.406e+00;SOR=1.986;VQSLOD=14.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:439,0,489
chr2	61415492	rs14170	A	G	2608.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.690e-01;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-2.220e-01;SOR=0.682;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:1006,0,1026
chr2	61416394	rs11309952	GT	G	374.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=0.545;SOR=1.179;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:61416394_GT_G:75,0,138:61416394
chr2	61416404	rs370286913	T	G	283.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.55;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:75:0|1:61416394_GT_G:75,0,138:61416394
chr2	61417145	rs777590	C	G	288.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=-1.383e+00;SOR=2.303;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:73,0,69
chr2	61417617	rs777591	A	G	5257.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=0.657;SOR=0.685;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,30:69:99:788,0,1044
chr2	61439206	rs751341	C	T	393.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.630e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=1.71;SOR=0.495;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:158,0,268
chr2	61442020	rs190948307	A	G	97.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:106,0,64
chr2	61448776	rs2290324	A	C	310.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.76;ReadPosRankSum=-1.661e+00;SOR=0.484;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,13:40:99:319,0,728
chr2	61450454	rs2123111	A	G	2267.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=57;ExcessHet=3.9794;FS=1.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=0.711;SOR=0.859;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,16:57:99:410,0,1079
chr2	61483715	rs68101593	A	T	310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=15;ExcessHet=3.9794;FS=2.005;MQ=60.00;MQRankSum=0.00;QD=8.38;ReadPosRankSum=1.48;SOR=1.402;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:48:48,0,459
chr2	61483725	rs72811484	T	A	379.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=8;ExcessHet=3.9794;FS=5.142;MQ=60.00;MQRankSum=0.00;QD=14.58;ReadPosRankSum=-5.900e-01;SOR=2.179;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:65:65,0,362
chr2	61484556	rs2060824	T	C	595.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=1.20;SOR=0.544;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:315,0,195
chr2	61505072	rs13004855	C	T	58.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=1.65;SOR=0.061;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,108
chr2	61520815	rs7566035	C	T	84.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,239
chr2	61522047	rs35292974	T	C	463.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=1.29;SOR=0.730;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:66:66,0,175
chr2	61522123	rs13014347	T	C	5487.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=1.831;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1143,108,0
chr2	61528299	rs11428092	T	TA	1028.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.850e-01;DB;DP=34;ExcessHet=3.9794;FS=2.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-2.450e-01;SOR=0.456;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,20:34:99:517,0,334
chr2	61538602	rs141750762	G	GAAAAGAGAAAGAAAAAGAAAA	1025.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=13;ExcessHet=3.0103;FS=5.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.79;ReadPosRankSum=1.10;SOR=3.312;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:51:765,51,0
chr2	61552379	rs11448157	A	AT	252.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=8;ExcessHet=3.9794;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=-1.350e-01;SOR=3.056;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:88:163,0,88
chr2	61552484	rs2593624	T	A	1684.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=25;ExcessHet=3.9794;FS=2.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=-8.200e-02;SOR=0.608;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:254,0,292
chr2	61558194	rs3962110	C	T	62.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:71,0,30
chr2	61558682	rs2694632	T	C	111.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.85;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:120,0,29
chr2	61566824	rs369130574	GA	G	150.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=37;ExcessHet=3.9794;FS=8.700;MQ=59.94;MQRankSum=0.00;QD=2.24;ReadPosRankSum=0.104;SOR=0.207;VQSLOD=3.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,7:37:57:57,0,647
chr2	61566954	rs10562156	ATTTTG	A	247.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.48;ReadPosRankSum=0.366;SOR=0.582;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:69:69,0,317
chr2	61570886	rs3980973	AAAGT	A	1558.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=43;ExcessHet=3.9794;FS=4.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.905;SOR=1.270;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,26:43:99:1024,0,961
chr2	61571295	rs2463102	G	C	225.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=-9.670e-01;SOR=1.085;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:78,0,32
chr2	61575308	rs6722430	A	G	16854.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.691e+00;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.41;ReadPosRankSum=-1.478e+00;SOR=0.303;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5151,488,0
chr2	61576517	rs811378	G	A	6400.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.302;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1752,161,0
chr2	61577949	rs811871	C	T	487.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=0.00;SOR=0.776;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:104,0,96
chr2	61605614	rs10208769	T	A	2985.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030e-01;DB;DP=53;ExcessHet=3.9794;FS=0.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=2.20;SOR=0.630;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:467,0,736
chr2	61622251	rs3213951	C	T	1374.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.980e-01;DB;DP=37;ExcessHet=3.9794;FS=0.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.309;SOR=0.791;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:425,0,701
chr2	61644329	rs13028833	C	G	2480.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=36;ExcessHet=3.9794;FS=1.543;MQ=59.92;MQRankSum=0.00;QD=20.17;ReadPosRankSum=1.64;SOR=0.559;VQSLOD=4.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,14:36:99:352,0,673
chr2	61647901	rs778155	A	G	1732.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=73;ExcessHet=3.9794;FS=2.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=1.33;SOR=0.908;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,32:73:99:850,0,932
chr2	61648909	rs34490089	AAC	A	238.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=1.5490;FS=4.868;MQ=60.00;MQRankSum=0.00;QD=21.72;ReadPosRankSum=-5.980e-01;SOR=0.132;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,245
chr2	61649791	rs7587389	A	G	682.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.69;ReadPosRankSum=1.83;SOR=2.400;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:62:143,0,62
chr2	61709349	rs9679557	C	A	1067.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.44;ReadPosRankSum=-2.410e-01;SOR=1.802;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:91:187,0,91
chr2	61713209	rs35844473	GGAAAATC	G	668.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.340e-01;DB;DP=20;ExcessHet=3.9794;FS=4.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-5.160e-01;SOR=0.145;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,13:20:99:0|1:61713209_GGAAAATC_G:547,0,1109:61713209
chr2	61713218	rs60155512	T	A	671.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=20;ExcessHet=3.9794;FS=2.200;MQ=60.00;MQRankSum=0.00;QD=19.17;ReadPosRankSum=-1.534e+00;SOR=0.301;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,13:20:99:0|1:61713209_GGAAAATC_G:547,0,1109:61713209
chr2	61713220	rs61235340	T	G	649.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DB;DP=19;ExcessHet=3.9794;FS=2.210;MQ=60.00;MQRankSum=0.00;QD=19.67;ReadPosRankSum=-1.465e+00;SOR=0.297;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,13:19:99:0|1:61713209_GGAAAATC_G:525,0,1112:61713209
chr2	61722519	rs74392163	G	GA	5276.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183e+00;DB;DP=66;ExcessHet=3.0103;FS=0.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=-5.520e-01;SOR=0.587;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,43:66:99:1166,0,534
chr2	61729258	rs2305155	A	G	6660.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.790e-01;DB;DP=58;ExcessHet=3.0103;FS=6.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.69;ReadPosRankSum=-8.180e-01;SOR=1.098;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,20:58:99:0|1:61729258_A_G:738,0,2307:61729258
chr2	61729268	rs2305156	T	C	6829.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=59;ExcessHet=3.0103;FS=5.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.67;ReadPosRankSum=-2.059e+00;SOR=1.025;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,21:59:99:0|1:61729258_A_G:742,0,2307:61729258
chr2	61749690	rs3732171	C	T	3823.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=48;ExcessHet=3.0103;FS=1.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=1.77;SOR=1.009;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,24:48:99:666,0,612
chr2	61749716	rs3732170	C	T	4397.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=58;ExcessHet=3.0103;FS=2.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=0.202;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,30:58:99:779,0,685
chr2	61753786	rs7421663	C	T	1196.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.49;ReadPosRankSum=-2.093e+00;SOR=2.554;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:94:94,0,319
chr2	61760756	rs13390751	A	C	109.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=2.833;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr2	61761169	rs1446532	G	A	698	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=5.784;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr2	62053878	rs11392751	G	GA	392.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.520e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=-2.189e+00;SOR=2.049;VQSLOD=6.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr2	62063093	rs11299120	TA	T	2022.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DB;DP=43;ExcessHet=6.9897;FS=2.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=0.781;SOR=0.447;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,33:43:59:693,0,59
chr2	62065525	rs1548322	A	G	660.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.45;ReadPosRankSum=0.712;SOR=3.816;VQSLOD=17.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr2	62065851	rs17513666	C	T	699.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847e+00;DB;DP=47;ExcessHet=3.0103;FS=2.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-8.460e-01;SOR=0.390;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,28:47:99:708,0,508
chr2	62066927	rs4672457	A	G	5596.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.318;DB;DP=68;ExcessHet=3.0103;FS=1.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=-9.500e-02;SOR=0.573;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2209,204,0
chr2	62067433	rs17513722	T	C	787.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DB;DP=56;ExcessHet=3.0103;FS=7.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-1.943e+00;SOR=1.561;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,28:56:99:796,0,731
chr2	62069358	rs11125895	T	C	2448.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DB;DP=86;ExcessHet=3.9794;FS=1.803;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-5.100e-01;SOR=0.845;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1126,0,1118
chr2	62069528	rs11125896	C	T	1059.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=26;ExcessHet=3.9794;FS=0.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=1.04;SOR=0.905;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:321,0,491
chr2	62073918	rs58256183	C	T	3378.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.264;DB;DP=80;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.587;SOR=0.661;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2484,240,0
chr2	62074140	rs113296637	A	AAC	1768.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.600e-02;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.53;ReadPosRankSum=-7.630e-01;SOR=0.772;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:62074140_A_AAC:553,39,0:62074140
chr2	62074154	rs62149863	G	A	98.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:62074140_A_AAC:107,0,142:62074140
chr2	62081012	rs4270331	A	C	20310.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.097;DB;DP=264;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=-1.371e+00;SOR=0.716;VQSLOD=6.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,264:264:99:8319,792,0
chr2	62081217	rs1881616	A	G	8033.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=6.12;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=-1.741e+00;SOR=0.619;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2769,210,0
chr2	62095994	rs4672463	A	G	2094.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.277;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.93;ReadPosRankSum=0.708;SOR=0.969;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:574,51,0
chr2	62096790	rs149499966	TTCTG	T	480.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=32;ExcessHet=3.0103;FS=3.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-6.000e-02;SOR=0.283;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,13:32:99:489,0,1000
chr2	62104343	rs7571143	C	T	545.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.33;ReadPosRankSum=0.480;SOR=1.739;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:340,27,0
chr2	62104660	rs36062307	T	TA	875.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.220e-01;DB;DP=27;ExcessHet=6.9897;FS=0.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.50;ReadPosRankSum=-1.670e-01;SOR=0.544;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,7:27:70:70,0,399
chr2	62107376	rs5831625	T	TC	3220.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.41;DB;DP=30;ExcessHet=3.0103;FS=7.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.89;ReadPosRankSum=0.380;SOR=1.888;VQSLOD=5.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1179,90,0
chr2	62107632	rs2272429	G	A	471.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.040e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=1.20;SOR=1.179;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:277,0,281
chr2	62110551	rs10604665	CAA	C	549.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.33;ReadPosRankSum=-3.660e-01;SOR=1.162;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:8:37:276,0,37
chr2	62110571	rs12713451	G	T	671.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=14;ExcessHet=3.9794;FS=1.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=1.08;SOR=1.347;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,12:14:40:397,0,40
chr2	62112221	rs11429418	G	GA	2723.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DB;DP=42;ExcessHet=3.9794;FS=2.754;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.45;ReadPosRankSum=-8.750e-01;SOR=1.015;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,37:42:19:0|1:62112221_G_GA:1401,0,19:62112221
chr2	62112222	rs67059162	G	A	2723.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=42;ExcessHet=3.9794;FS=2.776;MQ=59.87;MQRankSum=0.00;QD=25.21;ReadPosRankSum=-1.011e+00;SOR=1.042;VQSLOD=5.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,37:42:19:0|1:62112221_G_GA:1401,0,19:62112221
chr2	62112246	rs57035931	C	CT	892.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=24;ExcessHet=6.9897;FS=1.856;MQ=59.87;MQRankSum=0.00;QD=10.03;ReadPosRankSum=0.174;SOR=0.484;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:24:99:161,0,249
chr2	62133115	rs4672466	C	T	442.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.297e+00;DB;DP=26;ExcessHet=3.0103;FS=3.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=1.17;SOR=0.141;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:451,0,417
chr2	62196278	rs56190007	T	G	37.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.59;SOR=0.693;VQSLOD=14.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	62228180	rs55785307	C	G	325.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-8.340e-01;SOR=0.709;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:334,0,520
chr2	62282730	rs13425453	G	A	92.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,103
chr2	62729297	rs6756655	T	C	237.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=0.493;SOR=1.022;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:50:246,0,50
chr2	62729674	rs4672527	T	C	8752.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.46;SOR=0.709;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2287,195,0
chr2	62729747	rs11443505	G	GA	8015.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.07;SOR=0.971;VQSLOD=6.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2105,204,0
chr2	62730048	rs4672528	T	A	678.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.05;SOR=5.670;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr2	62732885	rs6754336	C	T	1487.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.346e+00;DB;DP=30;ExcessHet=3.9794;FS=2.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=1.16;SOR=0.209;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,21:30:99:735,0,294
chr2	62733189	rs17854454	C	T	5740.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=429;ExcessHet=3.0103;FS=0.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-1.129e+00;SOR=0.634;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:211,218:429:99:5749,0,5298
chr2	62733253	rs11676567	C	T	9804.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.19;DB;DP=225;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.400e-02;SOR=0.649;VQSLOD=6.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,105:225:99:3041,0,3170
chr2	62738883	rs6757222	C	T	2445.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.690e-01;DB;DP=44;ExcessHet=3.9794;FS=2.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=1.74;SOR=1.025;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,28:44:99:717,0,390
chr2	62738931	rs6757448	G	C	3686.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.620e+00;DB;DP=55;ExcessHet=3.0103;FS=0.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=-1.509e+00;SOR=0.563;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1585,163,0
chr2	62739135	rs4405748	A	C	1462.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=4.921;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:424,30,0
chr2	63085848	rs7567923	T	C	1465.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.60;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.58;ReadPosRankSum=0.00;SOR=2.461;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:153,0,137
chr2	63282567	rs2162011	G	A	1094.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.12;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=-6.290e-01;SOR=1.659;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:671,0,332
chr2	63380809	rs7595595	G	A	824.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=3.912;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:138,15,0
chr2	63486429	rs992214	C	T	6115.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.258;DB;DP=79;ExcessHet=3.0103;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=0.677;SOR=0.631;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2390,236,0
chr2	63486777	rs1517406	A	C	375.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=4.615;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	63540523	rs1517402	A	T	1198.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.84;DB;DP=15;ExcessHet=3.0103;FS=9.156;MQ=59.77;MQRankSum=-9.210e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=0.711;SOR=3.549;VQSLOD=-3.229e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:602,45,0
chr2	63605430	rs2292795	A	G	411.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-2.820e-01;SOR=1.292;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr2	63605772	rs2292794	A	G	958.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=7;ExcessHet=3.0103;FS=2.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=-9.400e-02;SOR=1.938;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:260,21,0
chr2	63609017	rs2138796	A	T	1101.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.560e-01;DB;DP=29;ExcessHet=6.9897;FS=4.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.360;SOR=0.329;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:254,0,466
chr2	63609383	rs10186743	G	C	268.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=-9.670e-01;SOR=1.445;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:87,0,31
chr2	63720210	rs7563623	A	G	1253.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.13;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.15;ReadPosRankSum=-8.510e-01;SOR=2.613;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:764,54,0
chr2	63798167	rs4671067	C	T	185.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.64;SOR=3.611;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	63798214	rs70965138	AT	A	525.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.816;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.91;ReadPosRankSum=-2.720e-01;SOR=1.609;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:169,18,0
chr2	63798333	rs4671068	C	T	4496.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.583e+00;DB;DP=53;ExcessHet=3.0103;FS=1.658;MQ=59.98;MQRankSum=-8.660e-01;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=-2.375e+00;SOR=0.551;VQSLOD=1.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1423,157,0
chr2	63816672	rs10469944	C	G	2281.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.692e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.60;ReadPosRankSum=0.670;SOR=0.473;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:627,48,0
chr2	63816776	rs10469945	T	C	599.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=0.524;SOR=1.981;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr2	63822785	rs2305157	T	C	7900.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.32;ReadPosRankSum=-1.218e+00;SOR=0.739;VQSLOD=6.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2970,289,0
chr2	63824306	rs11125979	T	G	157.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.87;SOR=3.258;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr2	63826528	rs7606045	T	G	1216.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=12;ExcessHet=3.0103;FS=16.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=-7.120e-01;SOR=5.670;VQSLOD=10.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:444,36,0
chr2	63833813	rs262473	G	T	157.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=3.611;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0
chr2	63849491	rs262496	T	C	3158.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=133;ExcessHet=3.9794;FS=2.367;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.135;SOR=0.859;VQSLOD=6.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,55:133:99:1589,0,2005
chr2	64069277	rs78573846	GA	G	1364.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.950e-01;DB;DP=32;ExcessHet=6.9897;FS=3.486;MQ=59.97;MQRankSum=0.00;QD=10.58;ReadPosRankSum=0.153;SOR=1.037;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,19:32:99:419,0,176
chr2	64069732	rs6546029	G	A	3856.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.96;ReadPosRankSum=0.958;SOR=0.965;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1738,147,0
chr2	64082654	rs372160888	GTTTT	G	1813.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.82;POSITIVE_TRAIN_SITE;QD=34.22;SOR=3.651;VQSLOD=5.77;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,21:21:64:808,64,0
chr2	64084007	rs62136367	A	C	2074.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=52;ExcessHet=3.9794;FS=0.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-7.600e-01;SOR=0.807;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:734,0,676
chr2	64085114	rs10183479	G	A	5583.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.624e+00;DB;DP=76;ExcessHet=3.0103;FS=3.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.93;ReadPosRankSum=-1.510e-01;SOR=0.488;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2383,228,0
chr2	64085344	rs6715992	C	T	537.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.27;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=-4.640e-01;SOR=2.093;VQSLOD=0.476;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:264,21,0
chr2	64089748	rs6732746	C	A	2404.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.929e+00;DB;DP=20;ExcessHet=3.0103;FS=2.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=-9.420e-01;SOR=0.283;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:722,60,0
chr2	64114398	.	C	CA	55.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290e-01;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=1.59;ReadPosRankSum=-4.300e-01;SOR=0.283;VQSLOD=5.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:13:13,0,192
chr2	64118158	rs368306965	TA	T	117.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.616;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.34;ReadPosRankSum=0.592;SOR=0.184;VQSLOD=5.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:44:44,0,229
chr2	64139630	rs139787198	A	T	470.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.730e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.162;SOR=0.693;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:479,0,571
chr2	64139831	.	TA	T	45.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.22;ReadPosRankSum=-3.180e-01;SOR=0.994;VQSLOD=5.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:32:32,0,319
chr2	64139901	rs2302809	A	T	489.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=2.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.328;SOR=0.293;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:61:131,0,61
chr2	64140301	rs10207847	A	T	2923.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e+00;DB;DP=60;ExcessHet=3.9794;FS=1.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.082;SOR=0.568;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,27:60:99:607,0,876
chr2	64146946	rs62136393	A	C	388.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.690e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.064;SOR=0.324;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:125,0,335
chr2	64148196	rs59540641	G	A	373.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=0.00;SOR=2.147;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:23:227,0,23
chr2	64174664	rs41291181	G	A	608.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.530e-01;DB;DP=19;ExcessHet=3.9794;FS=2.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.793;SOR=1.112;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:276,0,294
chr2	64189566	rs17028275	A	G	1124.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.180e-01;DB;DP=39;ExcessHet=3.9794;FS=0.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.565;SOR=0.534;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:389,0,617
chr2	64195997	rs200094653	C	CA	624.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.090e-01;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.44;ReadPosRankSum=-2.350e-01;SOR=0.724;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,12:30:99:243,0,370
chr2	64327544	rs329498	G	T	1671.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.697;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1688,162,0
chr2	64327592	rs329497	T	C	1680.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.48;SOR=0.871;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1697,176,0
chr2	64331815	.	CT	C	945.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;DP=40;ExcessHet=3.9794;FS=0.000;MQ=59.79;MQRankSum=1.00;QD=12.44;ReadPosRankSum=0.621;SOR=0.746;VQSLOD=0.616;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,13:40:99:248,0,356
chr2	64682364	rs3770741	A	C	1686.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=19;ExcessHet=3.9794;FS=10.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=-2.050e-01;SOR=2.633;VQSLOD=15.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:352,0,280
chr2	64752294	rs11684941	T	C	226.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=-1.645e+00;SOR=0.368;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	64794945	rs7598893	G	A	836.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.33;SOR=4.804;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	64796201	rs181627667	G	C	1757.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.914e+00;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.38;ReadPosRankSum=-1.124e+00;SOR=0.672;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,75:142:99:1766,0,1702
chr2	64796479	rs6546087	C	T	1957.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.216e+00;DB;DP=22;ExcessHet=3.0103;FS=1.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=1.08;SOR=1.070;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:856,66,0
chr2	64796847	rs2287532	A	G	4943.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=1.453;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2635,255,0
chr2	64796932	rs2287533	G	A	1814.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=5.376;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:990,75,0
chr2	64799937	rs147232569	TAA	T	969.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.31;ReadPosRankSum=1.04;SOR=1.802;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:412,33,0
chr2	64806928	rs2302881	T	G	283.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=4.174;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	64818824	rs3770722	C	T	144.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.49;SOR=1.609;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	64819249	rs35699964	T	TAA,TAAA	1816.94	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.270e-01;DB;DP=23;ExcessHet=0.4576;FS=4.243;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=1.28;SOR=0.303;VQSLOD=6.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,7,14:23:83:719,261,220,111,0,83
chr2	65131288	rs12620069	T	G	299.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:73,0,68
chr2	65131523	rs12623286	A	T	3511.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=103;ExcessHet=3.9794;FS=1.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.545;SOR=0.593;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,58:103:99:1471,0,1000
chr2	65131732	rs735473	G	A	1543.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=45;ExcessHet=3.9794;FS=12.168;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-3.440e-01;SOR=1.832;VQSLOD=16.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,16:45:99:478,0,722
chr2	65132050	rs78893802	G	A	2504.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DB;DP=95;ExcessHet=3.9794;FS=1.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.290;SOR=0.592;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1175,0,1143
chr2	65159596	rs1035165	G	A	2346.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.232e+00;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=1.19;SOR=0.695;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:805,0,682
chr2	65159656	rs80115615	A	G	240.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700e-02;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=0.701;SOR=0.892;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,9:26:99:249,0,517
chr2	65200435	rs35375623	A	G	115.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.77;SOR=2.833;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr2	65200618	rs4671636	C	A	2318.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.377;DB;DP=50;ExcessHet=3.9794;FS=8.331;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=1.59;SOR=0.286;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1437,150,0
chr2	65216886	rs1064512	G	C	1860.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346e+00;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-3.380e+00;SOR=0.644;VQSLOD=21.51;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:53,66:119:99:1869,0,1492
chr2	65231245	rs11891502	A	G	318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DB;DP=50;ExcessHet=3.0103;FS=1.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.37;ReadPosRankSum=0.508;SOR=0.973;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,14:50:99:327,0,1016
chr2	65231294	rs59206794	TATGGCCAAATACC	T	180.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730e-01;DB;DP=25;ExcessHet=3.0103;FS=1.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=0.159;SOR=1.179;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,6:25:99:189,0,1268
chr2	65243321	rs6728107	T	C	129.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.100;SOR=0.693;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:138,0,172
chr2	65309988	rs1420183	T	C	314.32	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=-1.890e-01;SOR=1.802;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:213,15,0
chr2	65315880	rs1420184	G	C	1843.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=0.160;SOR=0.589;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1099,87,0
chr2	65315903	rs1420185	G	A	1347.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.780e-01;DB;DP=21;ExcessHet=3.9794;FS=2.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=-5.720e-01;SOR=1.274;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:783,63,0
chr2	65331819	rs80248317	T	C	197.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.957e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-1.614e+00;SOR=0.836;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:206,0,238
chr2	65340998	rs6757520	C	T	734.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=1.16;SOR=2.584;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr2	65455301	rs7566950	C	T	424.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440e-01;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-2.930e-01;SOR=0.543;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:97:97,0,367
chr2	65473930	rs58944514	AAAATTTTC	A	4849.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.740e-01;DB;DP=46;ExcessHet=3.9794;FS=0.687;MQ=60.00;MQRankSum=0.00;QD=29.75;ReadPosRankSum=0.434;SOR=0.620;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,31:46:99:1257,0,1398
chr2	65478003	rs268853	C	T	358.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.88;SOR=4.615;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr2	65478371	rs7574628	T	A	1866.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.490e-01;DB;DP=14;ExcessHet=3.9794;FS=2.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.83;SOR=1.539;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:209,0,219
chr2	65478438	rs34710706	TA	T	596.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.13;SOR=6.273;VQSLOD=4.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr2	65481008	rs268871	A	C	8034.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.43;SOR=0.841;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2325,241,0
chr2	65488538	rs268862	G	A	6073.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=1.087;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1809,188,0
chr2	65495570	rs55843720	A	C	4875.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.74;SOR=2.685;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:96:1|1:65495570_A_C:1440,96,0:65495570
chr2	65495571	rs60931828	T	C	5025.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.37;SOR=2.707;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:65495570_A_C:1552,105,0:65495570
chr2	65495573	rs72536103	A	AC	5060.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=2.833;VQSLOD=6.05;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,35:35:99:1|1:65495570_A_C:1587,108,0:65495570
chr2	65495887	rs268875	G	A	12424.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=59.11;POSITIVE_TRAIN_SITE;QD=32.27;SOR=0.831;VQSLOD=4.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3906,353,0
chr2	65496144	rs190577	A	G	1227.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=27.95;SOR=5.549;VQSLOD=6.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:436,33,0
chr2	65540905	rs8827	C	G	19368.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=339;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-7.790e-01;SOR=0.676;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:154,185:339:99:5053,0,3773
chr2	65559027	rs2271198	A	G	5986.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.020e-01;DB;DP=87;ExcessHet=3.0103;FS=4.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=-2.214e+00;SOR=0.445;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2606,261,0
chr2	65561392	rs4671658	C	T	4681.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-03;DB;DP=179;ExcessHet=3.9794;FS=0.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-1.390e+00;SOR=0.732;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,94:179:99:2144,0,1922
chr2	65593439	rs56270685	A	AAACAACAACAAC,AAACAACAAC	918.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.250e-01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.84;ReadPosRankSum=-1.158e+00;SOR=0.582;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,6:11:99:659,259,226,217,0,180
chr2	65604914	rs268120	A	G	1127.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.079;SOR=0.859;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:474,0,350
chr2	66665146	rs2280334	T	C	3439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DB;DP=141;ExcessHet=3.9794;FS=0.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-4.360e-01;SOR=0.732;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,63:141:99:1613,0,2067
chr2	66667186	rs2271856	C	T	404.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=16;ExcessHet=3.9794;FS=1.596;MQ=60.00;MQRankSum=0.00;QD=9.87;ReadPosRankSum=1.20;SOR=0.285;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:195,0,277
chr2	66667200	rs9309387	A	AACACACACACAC	359.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=0.480;SOR=0.582;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:99:107,0,278
chr2	66668309	rs950965	A	G	313.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.712;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=-3.450e-01;SOR=0.593;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:142,12,0
chr2	66794923	rs5831822	A	AT	131.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.23;SOR=1.981;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr2	66795906	rs112723259	T	C	1346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.107e+00;DB;DP=136;ExcessHet=3.0103;FS=3.147;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=-1.072e+00;SOR=0.457;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,59:136:99:1355,0,2000
chr2	66796524	rs2066929	G	A	273.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=2.833;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr2	66798282	rs2861108	G	T	3104.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.31;SOR=4.307;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1098,93,0
chr2	67626127	.	G	A	135.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.06;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:144,0,23
chr2	67630308	rs13009070	A	C	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e-01;DB;DP=21;ExcessHet=3.0103;FS=1.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.410e-01;SOR=0.307;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:241,0,326
chr2	67630476	rs13036061	T	C	1792.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e-01;DB;DP=66;ExcessHet=3.9794;FS=1.226;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-1.234e+00;SOR=0.836;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:729,0,836
chr2	67630980	rs3770657	G	A	10967.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;DB;DP=123;ExcessHet=3.0103;FS=4.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-1.160e+00;SOR=0.397;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3991,368,0
chr2	67631129	rs35777125	G	A	1505.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=96;ExcessHet=3.0103;FS=6.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=0.132;SOR=0.555;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1514,0,1223
chr2	67631395	rs10496153	G	A	3783.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=89;ExcessHet=3.9794;FS=0.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.203;SOR=0.633;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,46:89:99:1299,0,1033
chr2	67632125	rs3770655	C	T	8685.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.160e-01;DB;DP=82;ExcessHet=3.0103;FS=1.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=-1.010e-01;SOR=0.825;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2717,246,0
chr2	67632214	rs1063571	C	T	857.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235e+00;DB;DP=71;ExcessHet=3.0103;FS=8.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-6.240e-01;SOR=1.170;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,32:71:99:866,0,1124
chr2	67637196	rs1569	G	A	5907.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=1.190;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1740,179,0
chr2	67637217	rs35271433	GTGAT	G	1897.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-02;DB;DP=44;ExcessHet=3.9794;FS=1.871;MQ=60.00;MQRankSum=0.00;QD=21.08;ReadPosRankSum=1.43;SOR=0.976;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,25:44:99:986,0,722
chr2	68352515	rs6742154	A	C	11088.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.24;DB;DP=183;ExcessHet=3.9794;FS=0.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=0.193;SOR=0.615;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,183:183:99:6229,549,0
chr2	68358341	rs62145930	T	C	3756.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.824;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-5.260e-01;SOR=0.742;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1605,159,0
chr2	68358653	rs17035004	T	C	1882.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.633e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=-3.400e-01;SOR=0.635;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:698,63,0
chr2	68385097	rs2044693	A	G	15577.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=0.829;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4550,432,0
chr2	68388823	rs1137930	A	G	7425.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=134;ExcessHet=3.9794;FS=0.852;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=-1.350e-01;SOR=0.636;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4025,400,0
chr2	68389276	rs11402583	G	GA	3306.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.670e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=1.48;SOR=0.424;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,31:34:75:860,75,0
chr2	68389481	rs3217588	CTT	C	14916.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.670e-01;DB;DP=150;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=0.389;SOR=0.671;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,150:150:99:6677,451,0
chr2	68400708	rs143417147	A	AT	279.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e+00;DB;DP=10;ExcessHet=3.9794;FS=5.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=0.213;SOR=0.075;VQSLOD=6.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:39:66,0,39
chr2	68401557	rs12691190	A	G	249.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.11;SOR=3.912;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	68402012	rs1060842	G	T	694.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=5.784;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr2	68407926	rs875	A	G	432.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.45;ReadPosRankSum=0.328;SOR=1.371;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr2	68413437	rs140773	G	GTTAA	570.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=4.804;VQSLOD=5.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	68415767	rs687	G	A	7509.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.121e+00;DB;DP=94;ExcessHet=3.0103;FS=3.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=0.158;SOR=0.947;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2766,280,0
chr2	68444171	rs374427852	C	CGCAG,CACGCAG	6645.50	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=25.82;SOR=1.374;VQSLOD=5.09;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,5,37:42:37:2308,1222,1080,206,0,37
chr2	68479118	.	C	T	401.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-02;DP=31;ExcessHet=3.0103;FS=1.523;MQ=60.00;MQRankSum=0.00;QD=12.94;ReadPosRankSum=-1.980e-01;SOR=0.357;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:410,0,398
chr2	68483396	rs7593613	A	T	848.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.440e-01;DB;DP=10;ExcessHet=3.0103;FS=5.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.44;ReadPosRankSum=-2.189e+00;SOR=3.528;VQSLOD=15.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
chr2	68511506	rs5831925	GA	G	3736.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.394e+00;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=0.039;SOR=0.438;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1279,138,0
chr2	68511584	rs735815	A	G	2499.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760e-01;DB;DP=51;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=0.326;SOR=0.764;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1607,153,0
chr2	68592315	rs3732046	A	C	1768.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500e-01;DB;DP=51;ExcessHet=1.5490;FS=0.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-1.830e-01;SOR=0.921;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,16:51:99:360,0,967
chr2	68592584	rs880668	T	C	7992.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=114;ExcessHet=3.0103;FS=4.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=0.552;SOR=0.976;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3694,342,0
chr2	68592700	rs3770651	A	G	1223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.013;SOR=0.776;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,24:39:99:732,0,443
chr2	68607947	rs3816281	G	T	1837.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.830e-01;DB;DP=62;ExcessHet=3.9794;FS=2.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-6.410e-01;SOR=0.935;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:849,0,772
chr2	68613710	rs2070171	G	A	3292.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DB;DP=103;ExcessHet=3.9794;FS=3.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.132;SOR=0.717;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,56:103:99:1476,0,1117
chr2	68615395	rs2241947	C	T	415.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=24;ExcessHet=3.0103;FS=2.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=-1.160e-01;SOR=1.569;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:424,0,300
chr2	68615438	rs3217525	A	AG	849.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040e-01;DB;DP=39;ExcessHet=3.9794;FS=2.363;MQ=60.00;MQRankSum=0.00;QD=12.13;ReadPosRankSum=-2.000e-01;SOR=0.396;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,16:39:99:432,0,631
chr2	68615654	rs2241946	T	C	1126.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DB;DP=74;ExcessHet=3.0103;FS=1.941;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=-4.730e-01;SOR=0.978;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1135,0,890
chr2	68620151	rs2289689	C	T	410.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=-1.080e-01;SOR=1.085;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:99,0,112
chr2	68620410	rs17602092	T	A	523.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=52;ExcessHet=3.0103;FS=6.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-1.320e-01;SOR=1.692;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,20:52:99:532,0,773
chr2	68620463	rs2289688	G	A	1371.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=0.088;SOR=0.776;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:586,0,254
chr2	68621338	rs17530191	G	T	645.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.760e-01;DB;DP=47;ExcessHet=3.0103;FS=4.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-5.060e-01;SOR=0.994;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,27:47:99:654,0,471
chr2	68621427	rs34196827	G	A	239.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.160e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.272;SOR=0.711;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:248,0,439
chr2	68622658	rs1373200	C	T	291.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-7.120e-01;SOR=1.329;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:300,0,396
chr2	68622914	rs1063479	G	A	7251.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.209;DB;DP=87;ExcessHet=3.0103;FS=0.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=-4.230e-01;SOR=0.737;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2681,260,0
chr2	68622952	rs1050181	G	C	692.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.982;SOR=0.687;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:701,0,699
chr2	68694849	.	T	C	585.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.02;ReadPosRankSum=-2.250e-01;SOR=0.714;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,26:73:99:594,0,1209
chr2	68740519	rs11691554	C	T	341.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517e+00;DB;DP=19;ExcessHet=3.0103;FS=4.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=0.761;SOR=2.694;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:350,0,244
chr2	68881938	.	CAA	C,CA	1690.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.380e+00;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.80;ReadPosRankSum=-2.530e-01;SOR=0.787;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,8,19:28:93:632,409,463,150,0,93
chr2	68882468	rs6722313	T	C	26884.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.348e+00;DB;DP=363;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=0.448;SOR=0.672;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,363:363:99:11048,1086,0
chr2	69002281	rs11685672	C	G	6133.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=104;ExcessHet=1.5490;FS=3.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=-1.039e+00;SOR=0.460;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3782,312,0
chr2	69009304	rs2271834	C	T	448.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-2.310e-01;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr2	69034847	rs3749128	C	T	373.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.98;SOR=2.494;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:390,33,0
chr2	69043121	rs62133268	G	A	146.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.70;SOR=3.258;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr2	69043264	rs67399232	CT	C	4015.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.744;VQSLOD=5.68;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:69043264_CT_C:1755,117,0:69043264
chr2	69043266	rs78107572	T	A	4015.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=26.74;SOR=1.770;VQSLOD=19.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:69043264_CT_C:1755,117,0:69043264
chr2	69043539	rs2271832	G	C	1241.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=2.115;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:604,54,0
chr2	69043681	rs939060	A	C	250.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=3.912;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr2	69045158	rs10197806	C	A	981.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.83;SOR=3.334;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:998,87,0
chr2	69045256	rs13418133	C	A	145.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=3.258;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr2	69046719	rs17036006	G	A	1621.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=1.893;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1638,154,0
chr2	69046870	rs11691421	G	T	104.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=2.833;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	69049941	rs10177248	T	C	2099.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.56;SOR=1.117;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2116,213,0
chr2	69052991	rs2311421	A	G	922.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=2.303;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:379,30,0
chr2	69053557	rs9902	T	C	293.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.27;SOR=4.174;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	69093354	rs2231343	G	A	1902.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=141;ExcessHet=3.0103;FS=2.998;MQ=60.00;MQRankSum=0.00;QD=13.49;ReadPosRankSum=-2.350e+00;SOR=0.736;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,75:141:99:1911,0,1660
chr2	69177971	rs74413164	C	T	1333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=56;ExcessHet=3.9794;FS=3.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-6.830e-01;SOR=1.019;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:645,0,866
chr2	69180161	rs7561266	T	A	2127.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.034e+00;DB;DP=30;ExcessHet=3.0103;FS=5.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=-7.560e-01;SOR=0.165;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:912,90,0
chr2	69180239	rs7600351	C	T	569.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.111e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.62;ReadPosRankSum=0.577;SOR=2.833;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	69201501	rs4575760	G	A	1074.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=1.11;SOR=0.555;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:407,0,127
chr2	69201894	rs4417751	C	T	1438.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.980e-01;DB;DP=70;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.558;SOR=0.698;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,30:70:99:785,0,1111
chr2	69201982	rs4430980	T	C	447.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.135;SOR=0.874;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:348,0,158
chr2	69297622	rs4591376	C	T	3482.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=36;ExcessHet=3.0103;FS=5.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-8.060e-01;SOR=1.030;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:350,0,628
chr2	69298013	rs4306745	C	T	352.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:79:0|1:69298013_C_T:81,0,79:69298013
chr2	69298014	rs4355153	C	A	467.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=-9.670e-01;SOR=3.611;VQSLOD=17.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:79:0|1:69298013_C_T:81,0,79:69298013
chr2	69298817	rs13030844	T	C	1548.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=1.82;SOR=0.746;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,33:60:99:793,0,655
chr2	69317925	rs4854546	G	A	10847.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=132;ExcessHet=3.0103;FS=1.722;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=-5.390e-01;SOR=0.945;VQSLOD=6.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,79:132:99:2037,0,1250
chr2	69318129	rs4241348	T	G	1877.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268e+00;DB;DP=12;ExcessHet=3.0103;FS=4.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=-1.679e+00;SOR=0.184;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:171,0,222
chr2	69330118	rs6710260	A	G	951.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DB;DP=70;ExcessHet=3.0103;FS=0.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.218;SOR=0.895;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,38:70:99:960,0,761
chr2	69330284	rs4241349	G	A	728.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DB;DP=10;ExcessHet=3.9794;FS=13.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=1.21;SOR=4.271;VQSLOD=12.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:91:91,0,237
chr2	69351621	rs11126217	T	A	1031.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.730e-01;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=1.06;SOR=0.538;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,3:19:34:34,0,515
chr2	69379614	rs34590960	G	A	817.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=9;ExcessHet=3.9794;FS=4.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=-1.680e-01;SOR=2.753;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:177,0,134
chr2	69397157	rs10191848	G	A	810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.185e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=-3.930e-01;SOR=0.843;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:216,0,188
chr2	69398263	rs4299364	G	A	2775.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e+00;DB;DP=57;ExcessHet=6.9897;FS=8.870;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-9.700e-02;SOR=0.333;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,32:57:99:861,0,658
chr2	69409029	rs6749826	C	A	4996.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072e+00;DB;DP=61;ExcessHet=3.9794;FS=1.263;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=1.46;SOR=0.815;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,42:61:99:1115,0,529
chr2	69409222	rs6752908	C	T	480.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=-2.720e-01;SOR=1.493;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,101
chr2	69420596	rs7584057	T	C	4599.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.41;MQRankSum=0.00;QD=31.15;ReadPosRankSum=-4.420e-01;SOR=0.881;VQSLOD=-2.885e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,11:26:99:1|0:69420574_GTC_G:417,0,1027:69420574
chr2	69553375	rs201330278	GA	G	1018.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=32;ExcessHet=3.9794;FS=3.298;MQ=60.00;MQRankSum=0.00;QD=12.57;ReadPosRankSum=0.161;SOR=0.436;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,17:32:99:355,0,284
chr2	69565345	rs10164798	T	C	283.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=1.65;SOR=0.368;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:96,0,62
chr2	69565842	rs11296709	TA	T	274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=0.272;SOR=0.836;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:69565842_TA_T:146,0,145:69565842
chr2	69565844	rs116730412	A	T	274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.13;ReadPosRankSum=-1.200e-01;SOR=0.976;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:69565842_TA_T:146,0,145:69565842
chr2	69573029	rs6722492	T	C	1709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=47;ExcessHet=3.9794;FS=1.327;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.972;SOR=0.823;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:629,0,599
chr2	69583873	rs67434964	AT	A	173.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-5.660e-01;SOR=0.330;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:69583873_AT_A:182,0,135:69583873
chr2	69583896	rs13389936	A	G	154.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=-8.420e-01;SOR=1.329;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:69583873_AT_A:162,0,116:69583873
chr2	69586293	rs6546505	A	C	967.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030e-01;DB;DP=24;ExcessHet=3.9794;FS=2.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=1.94;SOR=0.428;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:382,0,167
chr2	69586370	rs67760762	A	G	1045.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.936;SOR=0.643;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,18:28:99:472,0,237
chr2	69613926	rs6725340	T	C	414.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=0.086;SOR=1.292;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:98:98,0,195
chr2	69613958	rs6738707	A	G	760.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.14;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.046;SOR=0.509;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:238,0,412
chr2	69614161	rs6720415	A	G	4965.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;DB;DP=212;ExcessHet=3.9794;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=0.747;SOR=0.797;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,101:212:99:2409,0,2712
chr2	69626342	.	CA	C	533.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DP=39;ExcessHet=6.9897;FS=0.000;MQ=59.83;MQRankSum=0.00;QD=4.41;ReadPosRankSum=-7.800e-02;SOR=0.687;VQSLOD=5.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,10:39:99:155,0,410
chr2	69633382	rs6546513	A	T	377.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=8.000e-03;SOR=0.368;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:84:257,0,84
chr2	69642572	rs4328678	T	C	341.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=0.282;SOR=0.914;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:98:98,0,148
chr2	69657349	rs113587680	CT	C	297.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.190e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.70;MQRankSum=0.674;QD=14.15;ReadPosRankSum=-9.060e-01;SOR=0.569;VQSLOD=0.403;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:102,0,102
chr2	69659126	rs4453725	A	T	2127.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=71;ExcessHet=3.9794;FS=4.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=1.23;SOR=1.153;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,39:71:99:1094,0,703
chr2	69688631	.	CA	C	504.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=44;ExcessHet=6.9897;FS=0.630;MQ=60.00;MQRankSum=0.00;QD=3.77;ReadPosRankSum=1.66;SOR=0.773;VQSLOD=5.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,12:44:99:120,0,598
chr2	69688727	rs201581559	AT	A	380.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=2.34;ReadPosRankSum=-3.760e-01;SOR=0.724;VQSLOD=5.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,10:40:99:122,0,572
chr2	69693006	rs9309428	C	T	2458.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DB;DP=210;ExcessHet=3.0103;FS=1.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.763;SOR=0.859;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,91:210:99:2467,0,3179
chr2	69734839	rs58737638	AT	A	81.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.12;ReadPosRankSum=1.96;SOR=0.693;VQSLOD=5.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:35:37,0,35
chr2	69741609	rs2276689	C	T	2008.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.685e+00;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=1.75;SOR=0.719;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:507,0,556
chr2	69741753	rs3832159	CTGT	C	2997.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=27;ExcessHet=3.9794;FS=1.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=1.42;SOR=0.898;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:454,0,632
chr2	69741854	rs6715776	T	G	4551.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=0.929;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1469,138,0
chr2	69742067	rs12469876	T	A	407.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.13;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,70
chr2	69747817	rs2312211	G	C	3795.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033e+00;DB;DP=41;ExcessHet=3.0103;FS=1.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=0.426;SOR=1.097;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,27:41:99:710,0,329
chr2	69754565	rs17570697	T	C	364.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=0.985;SOR=0.914;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:98:148,0,98
chr2	69757556	.	C	A	259.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022e+00;DP=14;ExcessHet=3.0103;FS=12.601;MQ=60.00;MQRankSum=0.00;QD=18.52;ReadPosRankSum=0.753;SOR=4.407;VQSLOD=10.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:268,0,173
chr2	69759415	rs2276687	G	A	2143.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.180e-01;DB;DP=23;ExcessHet=3.0103;FS=3.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=-4.000e-01;SOR=0.314;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:350,0,373
chr2	69771484	rs3771544	C	T	9235.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.810e-01;DB;DP=107;ExcessHet=3.0103;FS=1.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=0.012;SOR=0.818;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1389,0,1261
chr2	69784255	rs3771543	C	T	1596.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496e+00;DB;DP=22;ExcessHet=3.9794;FS=1.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=0.00;SOR=1.469;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:185,0,489
chr2	69784278	rs3821277	T	C	1696.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=1.60;SOR=3.342;VQSLOD=18.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:82:82,0,294
chr2	70046255	rs3732269	G	C	1262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=26;ExcessHet=3.9794;FS=5.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=1.64;SOR=0.213;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,15:26:99:0|1:70046255_G_C:589,0,609:70046255
chr2	70046262	rs3732268	G	A	1259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=25;ExcessHet=3.9794;FS=1.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=1.92;SOR=0.498;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,14:25:99:0|1:70046255_G_C:552,0,648:70046255
chr2	70056866	rs28362672	A	G	180.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:115,0,104
chr2	70057448	rs3732266	T	G	3575.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=47;ExcessHet=3.0103;FS=4.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=-2.927e+00;SOR=0.914;VQSLOD=21.85;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:24,23:47:99:576,0,592
chr2	70068258	rs3836157	CT	C	2363.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DB;DP=24;ExcessHet=3.0103;FS=6.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=-1.670e+00;SOR=1.725;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:246,0,372
chr2	70076954	rs4852349	A	T	2842.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=31;ExcessHet=3.0103;FS=2.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.82;ReadPosRankSum=-1.325e+00;SOR=1.179;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:374,0,412
chr2	70098808	rs3214007	A	G	3460.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=34;ExcessHet=3.0103;FS=1.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.84;ReadPosRankSum=-4.490e-01;SOR=0.950;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:481,0,446
chr2	70120909	rs3214822	GA	G	862.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.790e-01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=1.17;SOR=0.666;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,15:35:99:412,0,607
chr2	70121197	rs2278934	T	C	965.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425e+00;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=1.93;SOR=0.652;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,20:59:99:434,0,1172
chr2	70123808	rs35135448	G	GT	86.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.980e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.19;ReadPosRankSum=-3.890e-01;SOR=0.412;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:95:95,0,115
chr2	70124269	rs11413663	G	GT	4204.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=55;ExcessHet=3.0103;FS=13.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=1.16;SOR=1.834;VQSLOD=2.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,21:55:99:433,0,801
chr2	70124316	rs3752781	T	A	4716.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=108;ExcessHet=1.5490;FS=0.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.369;SOR=0.771;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,49:108:99:1083,0,1437
chr2	70315448	rs12319	A	T	1405.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e+00;DB;DP=127;ExcessHet=3.0103;FS=1.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=1.33;SOR=0.555;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,54:127:99:1414,0,2125
chr2	70457784	rs200532251	C	CA	437.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=8;ExcessHet=3.9794;FS=10.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.619;SOR=2.948;VQSLOD=2.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,2:8:25:25,0,125
chr2	70502930	rs17005439	A	G	1155.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=4.047;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:463,42,0
chr2	70509158	rs6546583	C	T	352.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.15;SOR=4.615;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr2	70524396	rs77117086	C	T	161.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=29;ExcessHet=3.9794;FS=6.958;MQ=59.84;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=2.30;ReadPosRankSum=-6.980e-01;SOR=2.262;VQSLOD=-3.194e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,3:29:48:48,0,921
chr2	70524416	rs77938271	T	G	240.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=35;ExcessHet=3.9794;FS=11.427;MQ=59.23;MQRankSum=-3.560e+00;NEGATIVE_TRAIN_SITE;QD=2.79;ReadPosRankSum=-1.470e-01;SOR=3.012;VQSLOD=-4.020e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,3:35:30:30,0,1058
chr2	70524427	rs78213014	T	C	372.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=41;ExcessHet=3.9794;FS=7.113;MQ=58.88;MQRankSum=-4.296e+00;NEGATIVE_TRAIN_SITE;QD=3.92;ReadPosRankSum=0.088;SOR=1.949;VQSLOD=-3.211e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,4:41:99:0|1:70524427_T_C:99,0,1518:70524427
chr2	70524433	rs79236443	T	G	483.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=42;ExcessHet=3.9794;FS=1.159;MQ=58.76;MQRankSum=-5.045e+00;QD=4.88;ReadPosRankSum=-5.970e-01;SOR=0.915;VQSLOD=-2.853e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,6:42:99:0|1:70524427_T_C:138,0,1578:70524427
chr2	70524437	rs77747732	A	G	662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=47;ExcessHet=6.9897;FS=0.000;MQ=58.79;MQRankSum=-5.555e+00;QD=4.14;ReadPosRankSum=-3.810e-01;SOR=0.643;VQSLOD=-3.249e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,7:47:99:0|1:70524427_T_C:258,0,1653:70524427
chr2	70524444	rs78704688	C	G	734.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DB;DP=47;ExcessHet=6.9897;FS=0.989;MQ=58.63;MQRankSum=-5.785e+00;QD=4.40;ReadPosRankSum=-1.020e-01;SOR=0.501;VQSLOD=-3.217e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,9:47:99:0|1:70524427_T_C:261,0,1611:70524427
chr2	70524451	.	C	T	728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.244e+00;DP=46;ExcessHet=6.9897;FS=0.949;MQ=58.61;MQRankSum=-5.960e+00;QD=4.26;ReadPosRankSum=-7.540e-01;SOR=0.474;VQSLOD=-3.318e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,9:46:99:0|1:70524427_T_C:264,0,1563:70524427
chr2	70524452	rs80277652	A	G	728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=47;ExcessHet=6.9897;FS=2.099;MQ=58.62;MQRankSum=-6.016e+00;QD=4.24;ReadPosRankSum=-6.770e-01;SOR=0.428;VQSLOD=-3.306e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,9:47:99:0|1:70524427_T_C:264,0,1563:70524427
chr2	70524478	rs75143374	G	A	570.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341e+00;DB;DP=68;ExcessHet=6.9897;FS=8.360;MQ=58.94;MQRankSum=-5.448e+00;QD=2.54;ReadPosRankSum=0.524;SOR=0.296;VQSLOD=-3.484e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,14:68:99:208,0,1644
chr2	70676639	rs538118	A	G	1419.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.640e-01;DB;DP=52;ExcessHet=3.9794;FS=0.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-5.900e-01;SOR=0.539;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:617,0,709
chr2	70780081	rs11466191	C	G	446.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.79;ReadPosRankSum=0.697;SOR=1.911;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:111,0,137
chr2	70905099	rs2902577	T	G	3612.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.558;DB;DP=31;ExcessHet=3.0103;FS=2.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=-5.710e-01;SOR=0.386;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1073,93,0
chr2	70917812	rs10084293	C	T	7282.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.462;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=2.91;SOR=0.722;VQSLOD=22.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,104:105:99:3204,354,0
chr2	70933659	rs11682965	T	A	1254.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.699e+00;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=-7.220e-01;SOR=0.544;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:838,68,0
chr2	71004413	.	CA	C	417.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.310e-01;DP=18;ExcessHet=3.9794;FS=2.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.04;ReadPosRankSum=-2.460e-01;SOR=1.148;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,5:18:54:54,0,250
chr2	71036189	rs149426278	CA	C	731.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.44;SOR=0.734;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,22:50:99:740,0,978
chr2	71036758	rs3217143	TCA	T	877.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.84;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.75;ReadPosRankSum=1.46;SOR=2.226;VQSLOD=5.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
chr2	71043461	rs722896	C	T	4934.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=84;ExcessHet=1.5490;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=1.02;SOR=0.683;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1318,0,1081
chr2	71044211	rs2075221	C	T	4890.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180e-01;DB;DP=88;ExcessHet=1.5490;FS=0.660;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=-4.930e-01;SOR=0.614;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,43:88:99:999,0,1118
chr2	71047271	rs2075222	A	C	856.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=8;ExcessHet=1.5490;FS=4.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.79;ReadPosRankSum=0.157;SOR=1.447;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:17:230,0,17
chr2	71058835	rs741326	A	G	7591.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.24;SOR=1.847;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2316,231,0
chr2	71062648	rs10489990	G	A	3260.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.031e+00;DB;DP=71;ExcessHet=6.9897;FS=0.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-3.500e-02;SOR=0.782;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,38:71:99:932,0,958
chr2	71062833	rs11450450	G	GC	19166.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.43;SOR=0.866;VQSLOD=5.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,186:186:99:6965,565,0
chr2	71063066	rs2075225	A	G	1107.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.250e-01;DB;DP=50;ExcessHet=3.9794;FS=1.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.962;SOR=0.459;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:647,0,647
chr2	71127794	rs2234495	C	A	423.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DB;DP=51;ExcessHet=3.0103;FS=1.132;MQ=60.00;MQRankSum=0.00;QD=8.30;ReadPosRankSum=1.03;SOR=0.973;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,19:51:99:432,0,802
chr2	71148045	rs7564382	C	T	1638.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.14;ReadPosRankSum=-1.597e+00;SOR=0.669;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:281,0,160
chr2	71160421	rs2270262	G	C	2855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=65;ExcessHet=6.9897;FS=1.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-6.530e-01;SOR=0.581;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,30:65:99:967,0,978
chr2	71162996	rs11685700	A	G	8026.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046e+00;DB;DP=101;ExcessHet=3.0103;FS=1.249;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=0.464;SOR=0.832;VQSLOD=6.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,43:101:99:1079,0,1658
chr2	71163173	rs17720303	C	T	6336.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.540e-01;DB;DP=154;ExcessHet=6.9897;FS=1.800;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.32;SOR=0.829;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,75:154:99:1920,0,1948
chr2	71163350	rs72622609	C	T	447.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=0.175;SOR=0.569;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,131
chr2	71175370	rs61680005	CTTTT	C	1785.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.21;DB;DP=18;ExcessHet=3.0103;FS=2.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=-1.250e-01;SOR=0.322;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:810,54,0
chr2	71175645	rs11126312	G	A	1839.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e-01;DB;DP=72;ExcessHet=3.9794;FS=3.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.48;SOR=0.986;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,35:72:99:849,0,892
chr2	71175716	rs12620379	A	G	971.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.53;DB;DP=32;ExcessHet=3.9794;FS=2.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=-6.340e-01;SOR=0.278;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:638,0,394
chr2	71186382	rs17006573	G	A	4566.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=73;ExcessHet=3.9794;FS=2.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=0.129;SOR=0.909;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,34:73:99:901,0,995
chr2	71205976	rs1115049	A	G	2386.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.740e-01;DB;DP=33;ExcessHet=3.0103;FS=2.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.67;ReadPosRankSum=0.782;SOR=1.136;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1067,99,0
chr2	71206058	rs1115050	A	C	2065.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.09;SOR=0.922;VQSLOD=16.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:438,42,0
chr2	71206626	rs3771383	G	T	5214.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.326;DB;DP=84;ExcessHet=3.9794;FS=3.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.479;SOR=0.933;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2777,251,0
chr2	71208844	rs10209944	A	G	3380.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=16;ExcessHet=3.0103;FS=5.083;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.12;ReadPosRankSum=1.01;SOR=3.232;VQSLOD=17.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:662,48,0
chr2	71211417	rs72832792	C	G	8036.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=86;ExcessHet=3.0103;FS=0.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-3.410e-01;SOR=0.638;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2782,258,0
chr2	71211815	rs3796098	G	A	36011.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.664e+00;DB;DP=510;ExcessHet=3.0103;FS=0.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=1.07;SOR=0.582;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,510:510:99:14820,1524,0
chr2	71211989	rs3796099	A	G	47334.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=512;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=1.007;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,512:512:99:16092,1537,0
chr2	71212129	rs3796100	A	T	18858.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.950e-01;DB;DP=213;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.14;ReadPosRankSum=-1.168e+00;SOR=0.680;VQSLOD=6.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,213:213:99:7615,640,0
chr2	71212405	rs61732279	T	C	2859.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.093e+00;DB;DP=35;ExcessHet=3.0103;FS=2.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=-1.578e+00;SOR=0.310;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1246,105,0
chr2	71215617	rs4852735	A	G	1611.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=7.276;VQSLOD=23.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:260,18,0
chr2	71216246	rs2286980	A	C	3619.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-1.017e+00;SOR=0.593;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1556,132,0
chr2	71219276	rs201937951	A	AT	159.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.9794;FS=3.222;MQ=60.00;MQRankSum=0.00;QD=12.30;ReadPosRankSum=-1.800e-01;SOR=2.147;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:7:3:88,0,3
chr2	71220793	rs2276684	T	G	6000.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=80;ExcessHet=3.0103;FS=1.273;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=0.208;SOR=0.581;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,79:80:99:2347,229,0
chr2	71221822	rs2302561	A	G	22878.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.07;SOR=0.786;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,229:229:99:6726,686,0
chr2	71304538	rs147845543	C	CT	1381.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=85;ExcessHet=3.9794;FS=8.359;MQ=59.93;MQRankSum=0.00;QD=8.37;ReadPosRankSum=1.27;SOR=1.301;VQSLOD=3.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:48,37:85:99:753,0,1077
chr2	71351403	rs6748672	C	A	1148.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DB;DP=49;ExcessHet=3.9794;FS=2.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.687;SOR=0.437;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,22:49:99:545,0,678
chr2	71360282	rs13010513	G	A	3004.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=86;ExcessHet=3.9794;FS=1.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=1.06;SOR=0.642;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1175,0,1104
chr2	71360723	rs1813159	A	G	4581.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.009e+00;DB;DP=44;ExcessHet=3.0103;FS=8.780;MQ=60.00;MQRankSum=0.00;QD=30.22;ReadPosRankSum=-1.724e+00;SOR=0.147;VQSLOD=17.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,31:44:99:0|1:71360723_A_G:1155,0,956:71360723
chr2	71360735	rs138856662	T	TTCC	4381.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.632e+00;DB;DP=41;ExcessHet=3.0103;FS=6.606;MQ=60.00;MQRankSum=0.00;QD=28.50;ReadPosRankSum=-9.530e-01;SOR=0.201;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,28:41:99:0|1:71360723_A_G:1113,0,965:71360723
chr2	71367198	rs17655204	G	A	1498.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.951e+00;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.792;SOR=0.591;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,23:39:99:693,0,499
chr2	71415479	rs357780	T	C	619.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=0.319;SOR=1.931;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:49:49,0,221
chr2	71417065	rs357777	G	T	5609.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.719e+00;DB;DP=66;ExcessHet=3.0103;FS=1.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=0.091;SOR=0.897;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:623,0,1100
chr2	71429687	rs13001756	C	G	1851.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.463e+00;SOR=0.751;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,73:141:99:1860,0,1617
chr2	71429891	rs357761	C	T	616.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=0.842;SOR=1.981;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:71:135,0,71
chr2	71503874	rs2542538	T	C	1541.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=0.859;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1558,150,0
chr2	71503978	rs59596777	T	C	279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.42;MQRankSum=-1.306e+00;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-2.070e-01;SOR=0.922;VQSLOD=0.229;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,10:29:99:288,0,599
chr2	71592438	rs71402912	A	AT	159.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.440e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.69;ReadPosRankSum=-1.440e+00;SOR=1.402;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:71592438_A_AT:100,9,0:71592438
chr2	71592444	rs2542511	G	T	357.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.07;SOR=4.804;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:71592438_A_AT:100,9,0:71592438
chr2	71615571	rs2542529	C	T	3166.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.310e-01;DB;DP=38;ExcessHet=3.0103;FS=1.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=-1.961e+00;SOR=0.422;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:491,0,539
chr2	71620752	rs185560094	T	G	1584.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810e-01;DB;DP=119;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=1.52;SOR=1.054;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,59:119:99:1593,0,1608
chr2	71620818	rs6741436	C	T	5792.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380e-01;DB;DP=74;ExcessHet=3.0103;FS=0.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=0.732;SOR=0.600;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,30:74:99:792,0,1182
chr2	71622610	rs111582481	C	T	62.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.674;SOR=0.105;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:70,0,67
chr2	71627860	rs10210436	G	T	416.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.32;SOR=4.804;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	71635931	rs12466025	G	T	6294.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DB;DP=65;ExcessHet=3.0103;FS=0.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=0.775;SOR=0.836;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,34:65:99:817,0,712
chr2	71645628	rs72207075	G	GTT	444.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=21;ExcessHet=3.9794;FS=4.136;MQ=59.63;MQRankSum=0.00;QD=10.33;ReadPosRankSum=0.605;SOR=1.678;VQSLOD=5.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,9:21:99:265,0,388
chr2	71645854	rs372026644	TGTA	T	1213.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=34;ExcessHet=3.9794;FS=6.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.670;SOR=1.702;VQSLOD=6.36;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,13:34:99:472,0,949
chr2	71645890	rs4852784	G	C	1371.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=16;ExcessHet=3.9794;FS=1.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=0.00;SOR=1.217;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:118,0,332
chr2	71651597	rs7593986	C	G	398.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=5;ExcessHet=3.9794;FS=3.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=0.967;SOR=2.494;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:221,15,0
chr2	71651939	rs12613800	T	A	4681.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=73;ExcessHet=3.9794;FS=4.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=0.184;SOR=0.982;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,72:73:99:2309,209,0
chr2	71654175	rs1804020	G	A	2149.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.290e-01;DB;DP=96;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.231;SOR=0.714;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,45:96:99:1140,0,1394
chr2	71661855	rs35526551	C	CA	1374.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.140e-01;DB;DP=30;ExcessHet=1.5490;FS=1.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=-4.610e-01;SOR=0.959;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,30:30:93:1038,93,0
chr2	71680950	rs6741336	C	A	2765.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.033e+00;DB;DP=69;ExcessHet=3.9794;FS=3.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=0.849;SOR=1.805;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:1088,0,1330
chr2	71693845	rs6752632	G	A	621.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.255e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=0.638;SOR=1.329;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:171,0,265
chr2	71693943	rs61333801	G	A	2570.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-6.080e-01;SOR=0.652;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,31:73:99:801,0,1191
chr2	71694343	rs61322674	A	G	460.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=0.889;SOR=1.508;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:70:70,0,194
chr2	71708201	rs75490646	T	C	396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616e+00;DB;DP=41;ExcessHet=3.0103;FS=9.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-7.850e-01;SOR=0.089;VQSLOD=19.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:405,0,810
chr2	71708825	rs71402983	T	TATCC	1286.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.34;SOR=4.332;VQSLOD=3.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:54:770,54,0
chr2	71730055	rs12713753	G	A	209.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.126;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	71738987	rs34603128	C	T	2380.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=81;ExcessHet=3.9794;FS=1.142;MQ=59.92;MQRankSum=0.876;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.94;SOR=0.602;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,34:81:99:912,0,1400
chr2	71741257	rs55816929	G	C	75.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=2.303;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	71742736	rs61104194	C	T	2775.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230e-01;DB;DP=125;ExcessHet=3.9794;FS=2.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=1.07;SOR=0.772;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,66:125:99:1678,0,1499
chr2	71747235	rs11675897	A	G	7351.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.196e+00;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=1.18;SOR=0.684;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2907,296,0
chr2	71747432	rs11687223	G	T	6036.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=64;ExcessHet=3.0103;FS=9.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=1.01;SOR=0.169;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2304,192,0
chr2	71747568	rs12997658	G	T	622.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.000e+00;DB;DP=9;ExcessHet=3.0103;FS=5.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=0.705;SOR=3.312;VQSLOD=17.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:338,27,0
chr2	71747723	rs12713754	C	G	717.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=4.294;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:384,27,0
chr2	71747851	rs12713755	T	C	3691.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.460;DB;DP=47;ExcessHet=3.0103;FS=5.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.18;ReadPosRankSum=1.73;SOR=0.263;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,46:47:99:1632,101,0
chr2	71747899	rs12713756	G	A	1454.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=74;ExcessHet=3.9794;FS=1.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.826;SOR=0.853;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,33:74:99:844,0,1143
chr2	71753487	rs35982795	C	T	969.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=59.91;MQRankSum=1.04;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=-1.386e+00;SOR=0.573;VQSLOD=1.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:340,0,309
chr2	71755380	rs4852800	A	G	5957.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.161;DB;DP=67;ExcessHet=3.0103;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=0.023;SOR=0.477;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2152,201,0
chr2	71762232	rs4852801	C	T	6122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839e+00;DB;DP=227;ExcessHet=3.9794;FS=1.800;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=0.500;SOR=0.543;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,115:227:99:2874,0,3072
chr2	71762310	rs4852802	A	G	3203.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.469e+00;DB;DP=92;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-1.270e-01;SOR=0.661;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,47:92:99:1344,0,1432
chr2	71766124	rs79617374	G	T	528.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=-1.981e+00;SOR=0.859;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:69:119,0,69
chr2	71766487	rs7609409	G	A	1563.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DB;DP=73;ExcessHet=3.9794;FS=0.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.467;SOR=0.617;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,32:73:99:797,0,1158
chr2	71766622	rs78115186	T	A	1124.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.180e-01;DB;DP=26;ExcessHet=1.5490;FS=5.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=0.618;SOR=0.172;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:371,0,375
chr2	71776345	rs736096	C	T	1538.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.674;SOR=0.713;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,27:63:99:0|1:71776345_C_T:709,0,995:71776345
chr2	71776346	rs934061	A	G	5088.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.96;ReadPosRankSum=-6.600e-02;SOR=0.759;VQSLOD=6.57;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,66:66:99:1|1:71776345_C_T:2485,198,0:71776345
chr2	71776485	rs368577086	C	G	1142.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.880e-01;DB;DP=113;ExcessHet=3.0103;FS=1.511;MQ=60.00;MQRankSum=0.00;QD=10.11;ReadPosRankSum=-3.060e-01;SOR=0.861;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,50:113:99:1151,0,1614
chr2	71779032	rs7582130	G	A	688.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.830e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.46;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=-1.557e+00;SOR=2.066;VQSLOD=0.171;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr2	71780215	rs2303596	T	C	15053.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.670e-01;DB;DP=198;ExcessHet=3.0103;FS=0.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=-1.486e+00;SOR=0.794;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,198:198:99:5867,593,0
chr2	71780821	rs2303597	T	C	639.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.260e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=-2.040e-01;SOR=0.906;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:344,27,0
chr2	71781161	rs5832058	GAC	G	1403.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.65;ReadPosRankSum=0.494;SOR=0.793;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:419,0,330
chr2	71782764	rs745993	C	G	615.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.67;ReadPosRankSum=-1.981e+00;SOR=1.981;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr2	71791577	rs17007067	G	T	418.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:298,24,0
chr2	71795152	rs2288355	A	T	15189.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.750e-01;DB;DP=214;ExcessHet=3.0103;FS=1.588;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=0.471;SOR=0.547;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,214:214:99:6755,642,0
chr2	71795552	rs62143855	G	C	244.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.87;SOR=4.174;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
chr2	71796865	rs10205023	C	G	1934.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.63;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.21;ReadPosRankSum=0.783;SOR=1.609;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:525,42,0
chr2	71816602	rs3811611	G	C	840.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.983e+00;DB;DP=16;ExcessHet=6.9897;FS=3.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.165;SOR=0.160;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:356,0,209
chr2	71817003	rs1473228	A	G	921.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730e-01;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.684;SOR=0.546;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:371,0,154
chr2	71826008	rs2303600	T	C	2113.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.06;DB;DP=25;ExcessHet=3.9794;FS=2.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=0.251;SOR=0.312;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:71826008_T_C:1125,75,0:71826008
chr2	71826009	rs2303601	A	T	2113.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.802e+00;DB;DP=25;ExcessHet=3.9794;FS=2.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=0.314;SOR=0.323;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:71826008_T_C:1125,75,0:71826008
chr2	71828423	rs2303604	A	T	1979.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.684e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.12;ReadPosRankSum=0.818;SOR=0.439;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:774,66,0
chr2	71829821	rs1529408	G	T	7169.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=92;ExcessHet=3.0103;FS=11.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.64;ReadPosRankSum=0.233;SOR=1.367;VQSLOD=18.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2932,276,0
chr2	71838597	rs2303606	C	A	6789.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.670e+00;DB;DP=110;ExcessHet=3.9794;FS=7.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=0.867;SOR=1.017;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3675,329,0
chr2	71847943	rs12995778	C	A	2323.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.673;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:671,77,0
chr2	71848076	rs13001268	G	A	201.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.55;SOR=1.329;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr2	71871039	rs84181	A	G	4535.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.51;DB;DP=51;ExcessHet=3.0103;FS=0.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-2.581e+00;SOR=0.888;VQSLOD=22.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1750,153,0
chr2	71871236	rs84182	A	G	2412.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.40;DB;DP=23;ExcessHet=3.0103;FS=4.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.34;ReadPosRankSum=0.046;SOR=1.893;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:879,69,0
chr2	71891236	rs2303598	C	T	725.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=0.818;SOR=1.112;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:482,36,0
chr2	71891361	rs2303599	C	T	5217.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=0.381;SOR=0.763;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2137,180,0
chr2	71901142	rs2559080	G	A	73.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.51;SOR=2.303;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	71901286	rs2559081	C	T	2093.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=2.683;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:657,60,0
chr2	71906171	rs1863812	T	C	8052.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.41;SOR=2.103;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2337,210,0
chr2	71906278	rs17718530	A	C	3061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DB;DP=147;ExcessHet=3.9794;FS=0.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-3.500e-02;SOR=0.764;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,65:147:99:1430,0,1977
chr2	71907930	rs7558412	G	T	1674.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=4.174;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:612,48,0
chr2	71909822	rs2559082	C	T	3013.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.02;DB;DP=103;ExcessHet=3.9794;FS=1.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.397;SOR=0.811;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,55:103:99:1494,0,1192
chr2	72692272	rs5832083	A	AAG	10168.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.15;SOR=2.771;VQSLOD=5.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2482,168,0
chr2	72722772	.	T	C	222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.23;ReadPosRankSum=-1.687e+00;SOR=0.569;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:98:231,0,98
chr2	72742083	.	GACAC	G,GAC	3303.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.440e-01;DP=55;ExcessHet=3.0103;FS=3.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=-9.110e-01;SOR=0.433;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,49:55:43:1779,1520,1520,206,0,43
chr2	72786528	rs7559956	A	C	447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=32;ExcessHet=3.0103;FS=1.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-4.540e-01;SOR=1.179;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:456,0,438
chr2	72958022	rs3034989	T	TAAG	366.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-5.660e-01;SOR=1.329;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	73145739	rs115608752	C	T	197.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=-3.660e-01;SOR=1.402;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:97:206,0,97
chr2	73151153	rs56293554	T	TG	241.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=0.224;SOR=0.223;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:250,0,212
chr2	73151231	rs1561247	C	T	6352.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=3.500;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1735,165,0
chr2	73172445	rs2421097	A	G	452.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=-4.140e-01;SOR=1.730;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:59:228,0,59
chr2	73195837	rs10565763	TTTCC	T	874.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DB;DP=16;ExcessHet=3.9794;FS=5.630;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=1.90;SOR=0.071;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:402,0,274
chr2	73280303	rs13030434	G	A	865.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=13;ExcessHet=3.9794;FS=9.635;MQ=60.00;MQRankSum=0.00;QD=16.34;ReadPosRankSum=0.317;SOR=0.110;VQSLOD=18.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:161,0,234
chr2	73339430	rs4143146	T	G	22982.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=283;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.16;SOR=1.443;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,283:283:99:8541,849,0
chr2	73339708	rs1864488	G	A	25947.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.098e+00;DB;DP=332;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=-9.480e-01;SOR=0.701;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,332:332:99:10146,992,0
chr2	73429808	rs1864492	G	C	1175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.424e+00;DB;DP=90;ExcessHet=3.0103;FS=3.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-2.470e-01;SOR=1.139;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,42:90:99:1184,0,1500
chr2	73430234	rs13432787	T	C	2211.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.19;SOR=2.080;VQSLOD=18.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2228,180,0
chr2	73430416	rs58112913	G	A	105.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-4.310e-01;SOR=0.368;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:62:114,0,62
chr2	73435601	rs17008862	T	C	1220.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.483e+00;DB;DP=103;ExcessHet=3.0103;FS=1.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.455;SOR=0.502;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,53:103:99:1229,0,1312
chr2	73435786	rs57038990	C	A	479.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-01;DB;DP=28;ExcessHet=3.0103;FS=2.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.851;SOR=1.863;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:488,0,422
chr2	73441597	rs2276545	G	A	502.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.258e+00;DB;DP=28;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.94;ReadPosRankSum=0.968;SOR=1.954;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:511,0,459
chr2	73446819	rs7605115	C	G	64.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.328;SOR=0.446;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:73:73,0,100
chr2	73447736	rs2303905	G	A	997.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.442e+00;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.752;SOR=0.736;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1006,0,1063
chr2	73447775	rs2303904	A	G	2817.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=0.874;VQSLOD=18.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2834,282,0
chr2	73448174	rs2288632	C	T	614.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-2.255e+00;SOR=0.711;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:623,0,717
chr2	73450139	rs17008885	A	T	953.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=105;ExcessHet=3.0103;FS=2.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=0.812;SOR=1.006;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,40:105:99:962,0,1762
chr2	73455747	rs2288631	C	T	2558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DB;DP=197;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-3.810e-01;SOR=0.708;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,102:197:99:2567,0,2296
chr2	73456342	rs10185579	C	T	169.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=-1.800e-01;SOR=1.981;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:59:178,0,59
chr2	73457552	rs2288630	C	T	239.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=3.912;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr2	73460293	rs70965722	AGGGCC	A	5428.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.14;SOR=1.125;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,125:125:99:5445,377,0
chr2	73461483	rs1053329	C	A	1199.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=98;ExcessHet=3.0103;FS=2.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.290;SOR=0.914;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,43:98:99:1208,0,1332
chr2	73461731	rs113692330	C	T	133.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.36;ReadPosRankSum=0.00;SOR=0.412;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:141,0,227
chr2	73467676	rs3835072	GAA	G	3437.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=1.079;VQSLOD=6.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3454,232,0
chr2	73470497	rs2303907	T	C	753.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=5.892;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:768,54,0
chr2	73471193	rs11289471	GT	G	193.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=30;ExcessHet=6.9897;FS=5.712;MQ=60.00;MQRankSum=0.00;QD=2.33;ReadPosRankSum=1.29;SOR=1.501;VQSLOD=4.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,4:30:29:29,0,438
chr2	73471653	rs1018342	T	G	1875.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-4.220e-01;SOR=0.744;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,68:114:99:1884,0,1124
chr2	73472012	rs12465780	G	A	1347.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.54;SOR=3.145;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1364,114,0
chr2	73474706	rs57500214	T	A	520.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187e+00;DB;DP=24;ExcessHet=3.9794;FS=1.208;MQ=59.94;MQRankSum=0.00;QD=10.20;ReadPosRankSum=0.328;SOR=0.446;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,14:24:99:341,0,247
chr2	73477317	rs72255992	CCT	C	1728.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707e+00;DB;DP=81;ExcessHet=3.0103;FS=7.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=2.54;SOR=1.486;VQSLOD=5.08;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1737,0,1367
chr2	73477351	rs909065	T	C	1243.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=100;ExcessHet=3.0103;FS=0.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.124e+00;SOR=0.822;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,46:100:99:1252,0,1287
chr2	73478461	rs7851	A	T	591.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=1.10;SOR=0.740;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,27:65:99:600,0,896
chr2	73490034	rs140713639	C	T	71.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:80,0,31
chr2	73490125	rs7591768	A	G	126.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962e+00;DB;DP=12;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-4.650e-01;SOR=0.055;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:135,0,175
chr2	73490412	rs34363861	A	G	1793.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=-2.510e-01;SOR=1.342;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1810,128,0
chr2	73492614	rs526106	A	T	6367.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=298;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.021;SOR=0.743;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,132:298:99:3254,0,4211
chr2	73493303	rs13021769	T	C	255.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.177e+00;DB;DP=26;ExcessHet=3.0103;FS=3.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.104;SOR=1.209;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:264,0,436
chr2	73613031	rs36223922	TGGAGGA	T	3178.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.010e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.32;ReadPosRankSum=0.452;SOR=1.198;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1274,87,0
chr2	73613341	rs11126399	G	A	3586.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=75;ExcessHet=1.5490;FS=0.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=0.323;SOR=0.593;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2454,223,0
chr2	73649928	rs1881245	G	A	2659.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=76;ExcessHet=6.9897;FS=5.866;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.047;SOR=0.368;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:860,0,909
chr2	73651738	rs183390773	T	C	1092.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.444;DB;DP=76;ExcessHet=3.0103;FS=0.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=-8.990e-01;SOR=0.906;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1101,0,942
chr2	73651967	rs3813227	C	T	2603.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350e-01;DB;DP=115;ExcessHet=6.9897;FS=1.008;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-6.100e-02;SOR=0.772;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,51:115:99:1175,0,1593
chr2	73675669	rs2037814	T	G	9775.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=104;ExcessHet=3.0103;FS=1.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=0.352;SOR=0.603;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,49:104:99:1428,0,1448
chr2	73677833	rs6546836	A	G	11113.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=208;ExcessHet=6.9897;FS=0.517;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-1.530e-01;SOR=0.647;VQSLOD=6.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,104:208:99:2868,0,2578
chr2	73677898	rs6546837	G	C	11335.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=224;ExcessHet=6.9897;FS=0.522;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-1.630e-01;SOR=0.604;VQSLOD=6.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,106:224:99:3145,0,3251
chr2	73679280	rs6546838	A	G	4840.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DB;DP=114;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-5.900e-01;SOR=0.672;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,63:114:99:1681,0,1378
chr2	73679866	rs10496192	T	C	1252.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=91;ExcessHet=3.0103;FS=1.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.068;SOR=0.914;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,47:91:99:1261,0,1081
chr2	73679956	rs28730854	C	T	954.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=74;ExcessHet=3.0103;FS=0.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=0.239;SOR=0.532;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,33:74:99:963,0,1103
chr2	73679990	rs6724782	T	A	3289.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=76;ExcessHet=6.9897;FS=0.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-5.520e-01;SOR=0.772;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:947,0,1114
chr2	73680508	rs6546839	G	C	2538.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DB;DP=60;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.860;SOR=0.698;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,24:60:99:582,0,1000
chr2	73716810	rs3820700	G	A	515.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.920;SOR=0.639;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:524,0,658
chr2	73717103	rs2017116	G	C	1335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=78;ExcessHet=3.0103;FS=0.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.335;SOR=0.679;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,46:78:99:1344,0,810
chr2	73717567	rs2056486	G	T	3360.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=68;ExcessHet=6.9897;FS=0.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-9.450e-01;SOR=0.626;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,34:68:99:938,0,1046
chr2	73717656	rs10193972	A	G	3387.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=50;ExcessHet=6.9897;FS=4.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-3.920e-01;SOR=1.000;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,30:50:99:877,0,512
chr2	73746923	rs11884776	C	T	936.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=32;ExcessHet=3.9794;FS=2.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-3.790e-01;SOR=0.465;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:436,0,343
chr2	73761881	rs3738848	G	A	1869.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.803e+00;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-1.727e+00;SOR=0.671;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:560,0,512
chr2	73762236	rs10178678	A	G	714.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.470e-01;DB;DP=31;ExcessHet=3.9794;FS=1.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.381;SOR=0.381;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:451,0,480
chr2	73800881	rs57792928	GT	G	149.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.90;SOR=3.912;VQSLOD=4.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chr2	73829372	rs1052162	C	T	3480.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=117;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=0.245;SOR=0.676;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,56:117:99:1461,0,1483
chr2	73829678	rs7576245	C	T	158.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.253;SOR=0.693;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:74:103,0,74
chr2	73830581	rs113408397	G	GA	202.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.501;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.05;ReadPosRankSum=1.60;SOR=1.047;VQSLOD=5.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,6:21:96:96,0,335
chr2	73867862	rs4547554	G	C	63.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.81;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:71,0,76
chr2	73867897	rs1879662	A	G	407.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.93;ReadPosRankSum=-6.740e-01;SOR=2.670;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:75,0,73
chr2	73868328	rs13538	A	G	6156.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=214;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.537;SOR=0.693;VQSLOD=6.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,111:214:99:3059,0,2504
chr2	73899955	rs6725284	G	T	11171.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=203;ExcessHet=3.0103;FS=0.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.80;ReadPosRankSum=0.927;SOR=0.812;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,92:203:99:2037,0,2918
chr2	73900210	rs4637150	A	G	5789.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086e+00;DB;DP=70;ExcessHet=3.0103;FS=2.443;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=-1.360e-01;SOR=1.155;VQSLOD=6.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,39:70:99:1149,0,923
chr2	73900844	rs7579068	C	G	837.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=-4.640e-01;SOR=2.303;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:62:62,0,199
chr2	73900900	rs10206899	T	C	759.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=25;ExcessHet=3.9794;FS=2.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.249;SOR=1.609;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:441,0,373
chr2	73900918	.	CT	C	1068.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DP=32;ExcessHet=3.0103;FS=3.151;MQ=59.78;MQRankSum=0.00;QD=15.26;ReadPosRankSum=-4.350e-01;SOR=1.360;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,12:32:99:174,0,308
chr2	73912256	rs368610477	G	A	380.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=13;ExcessHet=3.9794;FS=5.642;MQ=46.28;MQRankSum=0.031;QD=11.19;ReadPosRankSum=-3.300e-01;SOR=2.542;VQSLOD=-3.942e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:246,0,145
chr2	73956940	rs67805162	CT	C	593.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e-01;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=59.59;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=0.720;SOR=0.387;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,5:22:58:58,0,337
chr2	73993436	rs34279043	CA	C	366.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=-2.350e-01;SOR=0.960;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:26:26,0,198
chr2	73994074	rs2567599	G	A	7595.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.63;SOR=2.090;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1699,153,0
chr2	74035880	rs11675635	A	G	1004.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=52.23;QD=27.15;SOR=0.746;VQSLOD=-7.010e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:318,36,0
chr2	74086687	rs1318987	C	A	132.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:141,0,28
chr2	74087290	rs1025424	T	C	718.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.500e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=1.13;SOR=1.002;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,27:34:99:0|1:74087290_T_C:727,0,213:74087290
chr2	74087298	rs2303987	A	G	111.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.18;ReadPosRankSum=-1.423e+00;SOR=0.425;VQSLOD=22.33;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,7:35:99:1|0:74087290_T_C:120,0,1142:74087290
chr2	74128391	rs1721241	G	C	9398.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=33.81;SOR=1.951;VQSLOD=5.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3148,288,0
chr2	74128433	rs1050146	C	T	11915.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.01;SOR=1.246;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3938,407,0
chr2	74128660	rs111608790	TG	T	1624.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.56;SOR=4.461;VQSLOD=4.75;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:74128660_TG_T:1641,117,0:74128660
chr2	74128666	rs143078935	TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGC	T	3885.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.38;SOR=5.570;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:74128660_TG_T:1604,114,0:74128660
chr2	74129389	rs7586415	T	C	346.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.65;SOR=4.615;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:363,27,0
chr2	74136457	.	A	C	264.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.52;ReadPosRankSum=1.25;SOR=0.458;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:273,0,203
chr2	74143570	rs1653253	A	C	826.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.27;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=1.68;SOR=1.040;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
chr2	74143990	rs1622752	T	A	1171.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.04;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.05;ReadPosRankSum=1.72;SOR=0.660;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:606,45,0
chr2	74146869	rs1721238	G	A	721.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.493;DB;DP=8;ExcessHet=3.0103;FS=10.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=0.623;SOR=4.310;VQSLOD=12.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:321,24,0
chr2	74153905	rs831526	C	T	4373.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=3.407;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:996,87,0
chr2	74159943	rs144979134	G	A	391.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=0.783;SOR=0.307;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:400,0,313
chr2	74173656	rs1523828	A	C	387.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.65;ReadPosRankSum=0.816;SOR=1.765;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr2	74174145	rs940297	A	G	910.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=2.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=-1.050e-01;SOR=1.542;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr2	74178080	rs7564379	T	C	536.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=1.33;SOR=1.708;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:276,24,0
chr2	74184573	rs2002711	G	A	434.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=-3.660e-01;SOR=0.307;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:111,0,30
chr2	74185876	rs4777	A	T	4893.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DB;DP=83;ExcessHet=3.9794;FS=1.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=0.619;SOR=0.785;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1141,0,829
chr2	74361641	rs702464	T	C	667.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=1.58;SOR=2.303;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:258,18,0
chr2	74362090	rs828879	A	G	1583.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=4.615;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:354,27,0
chr2	74372678	rs828888	A	C	321.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=1.06;SOR=0.602;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:196,0,133
chr2	74374641	rs828884	C	T	150.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.44;SOR=3.258;VQSLOD=19.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	74374884	rs1667605	G	A	1106.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=54;ExcessHet=3.9794;FS=1.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=2.09;SOR=0.892;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,28:54:99:732,0,597
chr2	74383630	rs11540640	G	A	1033.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.196e+00;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.066;SOR=0.765;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:594,0,663
chr2	74383911	rs828852	G	A	1080.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=2.753;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:74383911_G_A:477,36,0:74383911
chr2	74383912	rs56259334	T	C	416.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=-2.460e-01;SOR=0.446;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:74383911_G_A:142,0,248:74383911
chr2	74394034	rs56873314	G	C	523.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951e+00;DB;DP=27;ExcessHet=3.9794;FS=7.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=2.16;SOR=0.043;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:297,0,636
chr2	74400532	rs7559252	T	C	466.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=20.27;ReadPosRankSum=0.353;SOR=0.963;VQSLOD=5.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:184,0,278
chr2	74405867	rs79791015	T	G	1788.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DB;DP=83;ExcessHet=3.9794;FS=2.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=1.51;SOR=0.580;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,41:83:99:884,0,877
chr2	74405952	rs2272240	T	C	704.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=28;ExcessHet=3.9794;FS=3.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=0.648;SOR=1.609;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:395,0,491
chr2	74406055	rs1667601	G	T	180.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=-5.660e-01;SOR=1.179;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:22:188,0,22
chr2	74426038	rs1723285	G	A	2623.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.975e+00;DB;DP=51;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.87;ReadPosRankSum=-6.830e-01;SOR=1.887;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1954,153,0
chr2	74440879	rs62147684	A	G	57.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:66,0,33
chr2	74448655	rs7587117	T	C	2098.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.140e-01;DB;DP=48;ExcessHet=1.5490;FS=1.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=2.04;SOR=0.538;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1489,144,0
chr2	74460415	.	G	A	585.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.072e+00;DP=41;ExcessHet=3.0103;FS=1.471;MQ=60.00;MQRankSum=0.00;QD=14.27;ReadPosRankSum=-1.091e+00;SOR=1.022;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:594,0,519
chr2	74462641	rs2034454	T	G	155.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.46;SOR=3.258;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr2	74466594	rs4853018	G	A	1284.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460e-01;DB;DP=54;ExcessHet=3.9794;FS=2.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-8.630e-01;SOR=1.027;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,32:54:99:735,0,475
chr2	74481944	rs376191179	AT	A	275.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.74;MQRankSum=0.00;QD=6.13;ReadPosRankSum=-9.900e-02;SOR=1.609;VQSLOD=5.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:73:73,0,136
chr2	74489490	.	CTT	C	406.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DP=22;ExcessHet=6.9897;FS=1.365;MQ=59.66;MQRankSum=-6.550e-01;QD=9.46;ReadPosRankSum=0.828;SOR=0.437;VQSLOD=0.426;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:22:63:63,0,338
chr2	74649916	rs200949812	TC	T	277.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=33;ExcessHet=3.9794;FS=3.130;MQ=59.86;MQRankSum=0.00;QD=4.79;ReadPosRankSum=0.00;SOR=1.134;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,14:33:99:241,0,415
chr2	74649921	rs11685929	C	A	1882.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910e-01;DB;DP=37;ExcessHet=6.9897;FS=4.325;MQ=59.88;MQRankSum=0.00;QD=16.23;ReadPosRankSum=-8.620e-01;SOR=0.338;VQSLOD=5.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:37:99:407,0,263
chr2	74690786	rs377574049	TC	T	181.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.12;ReadPosRankSum=1.51;SOR=1.445;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:190,0,108
chr2	74707717	rs374053495	CA	C	67.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-02;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.06;MQRankSum=0.605;QD=2.94;ReadPosRankSum=0.679;SOR=0.665;VQSLOD=0.350;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:62:62,0,91
chr2	74720002	rs4853026	C	G	3772.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.36;SOR=1.609;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:895,69,0
chr2	74725144	rs6546908	T	C	13560.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.57;SOR=1.725;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4414,396,0
chr2	74802965	rs72818091	C	T	360.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524e+00;DB;DP=19;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=1.95;SOR=0.235;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:99:369,0,127
chr2	74867590	rs371257217	AT	A	138.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=4.33;ReadPosRankSum=1.39;SOR=0.384;VQSLOD=5.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:31:31,0,80
chr2	74900495	rs205648	G	A	1001.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.067e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=1.25;SOR=1.552;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:489,39,0
chr2	74900588	rs34617503	G	T	482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.420e-01;DB;DP=42;ExcessHet=3.0103;FS=1.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.776;SOR=0.927;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:491,0,693
chr2	74900651	rs138771307	G	A	935.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370e+00;DB;DP=66;ExcessHet=3.0103;FS=5.340;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.711;SOR=0.270;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,37:66:99:944,0,1151
chr2	74900656	.	G	A	835.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DP=73;ExcessHet=3.0103;FS=3.480;MQ=60.00;MQRankSum=0.00;QD=11.44;ReadPosRankSum=0.128;SOR=1.201;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,31:73:99:844,0,1600
chr2	75061873	rs663504	C	G	12353.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=241;ExcessHet=3.9794;FS=1.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=1.28;SOR=0.523;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,241:241:99:7330,721,0
chr2	75105798	rs604112	A	G	18302.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=0.928;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,209:209:99:6599,627,0
chr2	75113572	rs2306806	G	A	3718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.610e-01;DB;DP=159;ExcessHet=3.9794;FS=0.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.47;SOR=0.720;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,86:159:99:2005,0,1989
chr2	75113657	rs2229626	C	T	2996.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=130;ExcessHet=3.9794;FS=2.184;MQ=59.91;MQRankSum=0.958;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.820;SOR=0.869;VQSLOD=2.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:65,65:130:99:1594,0,1585
chr2	75113789	rs2229627	C	G	3265.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093e+00;DB;DP=120;ExcessHet=3.9794;FS=0.467;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.527;SOR=0.636;VQSLOD=6.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,64:120:99:1586,0,1441
chr2	75115108	rs10194657	A	G	1296.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=-9.520e-01;SOR=0.759;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:838,0,592
chr2	75115379	rs2279429	C	T	329.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.95;ReadPosRankSum=-4.140e-01;SOR=1.473;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:55:166,0,55
chr2	75116627	rs4853069	C	T	2000.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.240e-01;DB;DP=89;ExcessHet=3.9794;FS=0.610;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.120e-01;SOR=0.638;VQSLOD=6.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,50:89:99:1367,0,1037
chr2	75185667	rs7578100	C	G	715.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.18;SOR=6.091;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:144,12,0
chr2	75185800	rs373028668	G	A	1136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152e+00;DB;DP=54;ExcessHet=3.0103;FS=1.954;MQ=60.00;MQRankSum=0.00;QD=21.04;ReadPosRankSum=1.24;SOR=1.270;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,33:54:99:1145,0,657
chr2	75185856	rs12366	G	T	3598.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=2.345;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3615,333,0
chr2	75185974	rs142493904	G	A	2995.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.171e+00;DB;DP=279;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.81;ReadPosRankSum=1.86;SOR=0.714;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,132:279:99:3004,0,3910
chr2	75187573	rs3771799	G	A	6059.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=1.230;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1574,147,0
chr2	75187793	rs3821312	A	T	2184.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.19;SOR=3.575;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:725,66,0
chr2	75187869	rs3771800	T	C	246.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=4.174;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr2	75425623	rs2024512	G	A	435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.286;SOR=0.518;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:274,0,269
chr2	75425728	rs6715729	A	G	1469.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=68;ExcessHet=3.9794;FS=1.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=1.40;SOR=0.550;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:758,0,989
chr2	75881828	rs6759555	T	C	4244.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=97;ExcessHet=6.9897;FS=0.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-3.400e-01;SOR=0.724;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,36:97:99:959,0,1427
chr2	75882156	rs11324562	CT	C	681	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=18;ExcessHet=6.9897;FS=3.023;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.126;SOR=0.606;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:18:2:137,0,2
chr2	75882576	rs11847	T	C	74.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-1.150e+00;SOR=0.446;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:80,0,31
chr2	75897176	rs13429072	C	G	989.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=0.401;SOR=0.866;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:450,0,334
chr2	75898890	rs34342745	CATTT	C	670.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=1.53;SOR=1.179;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:351,0,586
chr2	75906624	rs2024034	C	T	580.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=0.967;SOR=4.047;VQSLOD=14.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:79,0,30
chr2	75907351	rs6722682	T	C	974.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=75;ExcessHet=3.0103;FS=0.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.101;SOR=0.536;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,39:75:99:983,0,788
chr2	75915035	rs1803196	C	T	3984.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=115;ExcessHet=6.9897;FS=1.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-5.250e-01;SOR=0.601;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,52:115:99:1147,0,1610
chr2	75917612	rs2301978	G	A	228.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-1.036e+00;SOR=0.582;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,76
chr2	75919272	rs142689014	AATAT	A	2007.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.74;ReadPosRankSum=0.524;SOR=1.649;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:5:63:92,0,63
chr2	75919294	rs116783069	T	C	2240.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=2.494;MQ=59.70;MQRankSum=0.00;QD=28.03;ReadPosRankSum=0.524;SOR=1.727;VQSLOD=3.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:63:0|1:75919294_T_C:165,0,63:75919294
chr2	75919296	rs111967112	T	C	2159.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=2.767;MQ=59.69;MQRankSum=0.00;QD=33.75;ReadPosRankSum=0.524;SOR=1.903;VQSLOD=2.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:63:0|1:75919294_T_C:165,0,63:75919294
chr2	75923413	rs7560262	T	C	3794.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DB;DP=71;ExcessHet=6.9897;FS=5.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.506;SOR=0.593;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,36:71:99:890,0,844
chr2	75928300	rs6547019	G	T	2497.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848e+00;DB;DP=63;ExcessHet=6.9897;FS=2.115;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=1.20;SOR=0.902;VQSLOD=5.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,27:63:99:698,0,1057
chr2	75929238	rs3088180	C	A	762.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380e+00;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.247;SOR=1.609;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:248,0,246
chr2	75933590	rs10204609	A	G	176.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.000e-03;DB;DP=15;ExcessHet=3.0103;FS=2.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=1.31;SOR=0.223;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:185,0,235
chr2	75933830	rs6728499	T	A	1263.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.545e+00;DB;DP=37;ExcessHet=6.9897;FS=4.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.635;SOR=0.300;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:593,0,451
chr2	75933858	rs34446032	A	G	472.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=24;ExcessHet=3.0103;FS=2.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=0.478;SOR=2.187;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:481,0,224
chr2	75937801	rs10177030	C	T	464.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=-1.744e+00;SOR=0.507;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:473,0,220
chr2	77745255	rs201250778	TAA	T	87.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.91;ReadPosRankSum=0.319;SOR=0.446;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:22:96,0,22
chr2	79252950	rs369221	A	G	980.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.82;ReadPosRankSum=0.120;SOR=2.546;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:107,0,212
chr2	79253028	rs3816371	G	T	559.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.765e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.406;SOR=0.452;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:568,0,644
chr2	79254065	rs431912	C	T	4125.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.290e-01;DB;DP=140;ExcessHet=6.9897;FS=19.195;MQ=58.59;MQRankSum=-6.317e+00;QD=8.70;ReadPosRankSum=0.194;SOR=1.801;VQSLOD=-4.693e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:87,53:140:99:1483,0,2460
chr2	79254101	rs396461	T	G	8028.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=193;ExcessHet=6.9897;FS=3.281;MQ=58.96;MQRankSum=-4.810e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.303;SOR=0.950;VQSLOD=-1.519e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:101,92:193:99:2758,0,2793
chr2	79254261	rs452267	T	C	12845.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=154;ExcessHet=3.0103;FS=2.942;MQ=59.79;MQRankSum=-1.485e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=-1.300e-01;SOR=1.112;VQSLOD=0.735;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:81,73:154:99:2159,0,2283
chr2	79254771	rs77260235	G	C	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.240e+00;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-1.640e-01;SOR=0.602;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:507,0,387
chr2	79255426	rs383969	G	C	4232.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=1.24;SOR=0.760;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,32:53:99:834,0,479
chr2	79312414	rs3739144	G	A	4634.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.878e+00;DB;DP=78;ExcessHet=3.9794;FS=7.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=1.39;SOR=0.448;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2564,233,0
chr2	79313815	rs2073445	G	T	5456.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.480e-01;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=0.684;SOR=0.653;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1985,186,0
chr2	79314081	rs6738657	T	C	633.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=36;ExcessHet=3.0103;FS=3.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=-8.360e-01;SOR=0.287;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:642,0,373
chr2	79314094	rs6723688	G	T	2791.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.996e+00;DB;DP=32;ExcessHet=3.0103;FS=5.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.70;ReadPosRankSum=-5.780e-01;SOR=0.215;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1139,96,0
chr2	79314276	rs61448477	C	T	191.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.16;SOR=1.022;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr2	79314876	rs2073444	C	A	2712.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.35;DB;DP=26;ExcessHet=3.0103;FS=3.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.60;ReadPosRankSum=-1.071e+00;SOR=1.385;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:857,78,0
chr2	79348129	rs11339710	GA	G	3398.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=59;ExcessHet=3.0103;FS=1.372;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=0.874;SOR=0.499;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,49:59:99:1249,111,0
chr2	79348196	rs2070707	G	T	494.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317e+00;DB;DP=29;ExcessHet=3.0103;FS=2.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-8.990e-01;SOR=1.609;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:503,0,386
chr2	79348282	rs2070708	T	C	109.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=1.65;SOR=1.022;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:118,0,64
chr2	79350186	rs3739142	G	A	3193.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793e+00;DB;DP=81;ExcessHet=6.9897;FS=0.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-8.940e-01;SOR=0.733;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,49:81:99:1219,0,829
chr2	79350347	rs12228	A	G	6879.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=0.890;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2070,195,0
chr2	79350505	rs12072	C	T	1516.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DB;DP=23;ExcessHet=6.9897;FS=2.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-1.121e+00;SOR=1.034;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:233,0,472
chr2	79385758	rs80188986	A	C	3541.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=154;ExcessHet=6.9897;FS=2.753;MQ=58.22;MQRankSum=-7.128e+00;QD=7.77;ReadPosRankSum=1.80;SOR=0.927;VQSLOD=-4.864e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:108,46:154:99:1125,0,2889
chr2	79385786	rs76653007	T	C	3577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=137;ExcessHet=6.9897;FS=2.899;MQ=58.14;MQRankSum=-7.892e+00;QD=8.75;ReadPosRankSum=-4.230e-01;SOR=0.939;VQSLOD=-4.852e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:102,35:137:99:0|1:79385786_T_C:1152,0,4489:79385786
chr2	79385787	rs77686105	G	A	3577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DB;DP=137;ExcessHet=6.9897;FS=2.899;MQ=58.11;MQRankSum=-7.785e+00;QD=8.86;ReadPosRankSum=-5.980e-01;SOR=0.916;VQSLOD=-4.725e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:102,35:137:99:0|1:79385786_T_C:1152,0,4489:79385786
chr2	79385823	rs201139260	T	G	791.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=110;ExcessHet=6.9897;FS=6.222;MQ=58.48;MQRankSum=-6.188e+00;QD=2.47;ReadPosRankSum=-3.177e+00;SOR=1.101;VQSLOD=-4.297e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:90,20:110:99:272,0,2324
chr2	79422965	rs1434199	C	G	3288.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.063;DB;DP=42;ExcessHet=3.0103;FS=0.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=8.000e-03;SOR=0.802;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1266,126,0
chr2	79423062	rs149273901	TTTTG	T	1057.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=16;ExcessHet=3.9794;FS=4.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=1.88;SOR=1.516;VQSLOD=6.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:312,0,425
chr2	79878664	rs3739139	A	G	1519.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DB;DP=59;ExcessHet=3.9794;FS=1.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-1.600e-01;SOR=0.869;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:663,0,742
chr2	79878794	.	G	T	921.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.060e-01;DP=51;ExcessHet=3.0103;FS=1.128;MQ=60.00;MQRankSum=0.00;QD=18.06;ReadPosRankSum=0.980;SOR=0.984;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,25:51:99:0|1:79878794_G_T:930,0,1491:79878794
chr2	79878795	.	C	T	921.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590e-01;DP=50;ExcessHet=3.0103;FS=2.524;MQ=60.00;MQRankSum=0.00;QD=18.43;ReadPosRankSum=1.23;SOR=1.138;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,24:50:99:0|1:79878794_G_T:930,0,1491:79878794
chr2	79914570	rs35164413	C	CT	2775.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.990e-01;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=0.308;SOR=0.855;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,24:39:99:500,0,262
chr2	80529956	rs6733871	T	C	4377.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.38;DB;DP=161;ExcessHet=3.9794;FS=5.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=1.43;SOR=0.993;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,68:161:99:1836,0,2421
chr2	80540462	rs75931210	T	C	51.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.54;ReadPosRankSum=-1.834e+00;SOR=1.179;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,148
chr2	80540530	rs56757449	G	C	544.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.930e-01;DB;DP=19;ExcessHet=3.9794;FS=2.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.537;SOR=1.287;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:268,0,346
chr2	80620284	rs13390195	G	A	298.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.011e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.57;ReadPosRankSum=-9.540e-01;SOR=0.646;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:307,0,184
chr2	80620574	rs77092015	G	A	306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=-4.100e-02;SOR=0.804;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:315,0,284
chr2	80801524	rs2276661	T	C	448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165e+00;DB;DP=33;ExcessHet=3.0103;FS=1.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-5.590e-01;SOR=0.393;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:457,0,500
chr2	80831009	rs216661	A	G	282.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=0.674;SOR=1.445;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr2	80831591	rs216662	G	C	421.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.357;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=-9.790e-01;SOR=1.292;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:261,24,0
chr2	80846147	rs56987036	C	CT	612.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.790e-01;DB;DP=19;ExcessHet=6.9897;FS=1.122;MQ=60.00;MQRankSum=0.00;QD=10.55;ReadPosRankSum=-3.770e-01;SOR=0.454;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,16:19:8:321,0,8
chr2	80874623	rs77229391	A	T	1484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=83;ExcessHet=3.0103;FS=1.927;MQ=59.99;MQRankSum=1.26;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=1.50;SOR=0.491;VQSLOD=1.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,50:83:99:1493,0,765
chr2	83083845	rs1420755	C	T	3760.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.29;DB;DP=72;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=2.08;SOR=0.610;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2550,216,0
chr2	84650707	rs2832	A	G	1774.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.240e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-1.965e+00;SOR=0.807;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:630,54,0
chr2	84660240	rs957786	G	A	342.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.55;ReadPosRankSum=0.524;SOR=1.981;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	84676163	rs10202632	C	A	3072.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.630e-01;DB;DP=34;ExcessHet=3.0103;FS=4.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=-1.750e-01;SOR=1.356;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1119,102,0
chr2	84676886	.	TAAA	T	1353.20	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.221e+00;DP=11;ExcessHet=3.0103;FS=5.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.87;ReadPosRankSum=-5.890e-01;SOR=1.996;VQSLOD=6.22;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:32:295,32,0
chr2	84686500	rs140936198	T	C	1946.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=146;ExcessHet=3.0103;FS=0.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=1.13;SOR=0.595;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,77:146:99:1955,0,1686
chr2	84755996	rs35980296	A	AT	3598.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.511;DB;DP=40;ExcessHet=3.0103;FS=3.222;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=0.823;SOR=0.375;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,39:40:99:1024,101,0
chr2	84756049	rs4832089	G	A	7559.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450e+00;DB;DP=78;ExcessHet=3.0103;FS=1.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=-1.428e+00;SOR=0.552;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2472,232,0
chr2	84756341	rs4832090	T	G	1554.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.44;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.55;ReadPosRankSum=-2.650e-01;SOR=1.453;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:604,48,0
chr2	84771480	rs1037863	G	A	5499.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.800e-02;DB;DP=53;ExcessHet=3.0103;FS=1.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=-8.280e-01;SOR=0.651;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1604,158,0
chr2	84771567	rs1542477	C	T	3623.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=30;ExcessHet=3.0103;FS=3.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=-1.510e-01;SOR=1.190;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:926,90,0
chr2	84774893	rs12474026	G	A	1110.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.66;ReadPosRankSum=-1.080e-01;SOR=2.833;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:299,21,0
chr2	84780452	rs10627001	C	CTCTG	298.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=4.174;VQSLOD=6.57;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:84780452_C_CTCTG:311,21,0:84780452
chr2	84780486	.	TTCTTTTCTTTCTTTCTTTCTTTC	T	164.83	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.20;SOR=3.258;VQSLOD=3.99;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:84780452_C_CTCTG:180,12,0:84780452
chr2	84784716	rs6729657	G	A	193.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=40.00;QD=31.73;SOR=1.981;VQSLOD=-4.588e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr2	84784780	rs10660724	C	CAAAAA	373.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=49.89;QD=29.14;SOR=1.863;VQSLOD=4.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	84800605	rs11891970	C	A	5415.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=57;ExcessHet=3.0103;FS=2.110;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.51;ReadPosRankSum=-2.550e-01;SOR=0.724;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1734,171,0
chr2	84806553	rs6547569	G	A	1774.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.370e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=-1.089e+00;SOR=2.507;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:473,36,0
chr2	84806942	rs6547570	C	G	776.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.140e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=-1.930e+00;SOR=2.584;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr2	84816015	rs1006244	A	G	1260.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954e+00;DB;DP=113;ExcessHet=3.0103;FS=2.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=1.36;SOR=0.469;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,58:113:99:1269,0,1348
chr2	84821407	.	G	GA	209.85	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.01;SOR=3.611;VQSLOD=5.72;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:84821407_G_GA:45,3,0:84821407
chr2	84821408	.	G	GCAGGAAGTATT	201.92	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=3.611;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:84821407_G_GA:45,3,0:84821407
chr2	84822715	rs6761632	C	T	1863.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=1.17;SOR=0.620;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:359,0,381
chr2	84831767	rs7570369	G	A	485.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=-4.140e-01;SOR=1.981;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,69
chr2	84832476	.	CA	C	406.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-4.900e-01;SOR=2.985;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:6:25:40,0,25
chr2	84833884	rs10193468	G	T	619.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.80;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:18:104,0,18
chr2	84834063	rs4276039	T	C	8243.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=124;ExcessHet=3.0103;FS=4.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=0.172;SOR=1.019;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3692,372,0
chr2	84834237	rs4441485	T	C	3908.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.520e-01;DB;DP=72;ExcessHet=3.9794;FS=8.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=1.22;SOR=1.360;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,45:72:99:1259,0,644
chr2	84834375	rs4240194	C	T	438.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.73;ReadPosRankSum=-1.282e+00;SOR=3.767;VQSLOD=16.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:31:141,0,31
chr2	84834396	rs4240195	T	A	325.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.68;ReadPosRankSum=0.967;SOR=3.056;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:71:0|1:84834396_T_A:81,0,71:84834396
chr2	84834404	rs4240196	T	C	287.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=0.967;SOR=2.584;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:71:0|1:84834396_T_A:81,0,71:84834396
chr2	84846683	rs11889456	A	G	325.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=4.615;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:189,15,0
chr2	84851763	rs11126970	G	A	3258.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=86;ExcessHet=3.9794;FS=1.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.294;SOR=0.792;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1272,0,1189
chr2	84852011	rs11676670	C	T	3120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848e+00;DB;DP=109;ExcessHet=3.9794;FS=1.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.766;SOR=0.786;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,59:109:99:1538,0,1328
chr2	84852228	rs13405314	T	A	1084.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.186;SOR=0.613;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:414,0,409
chr2	84861723	rs7570005	C	T	1764.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=56;ExcessHet=3.9794;FS=2.079;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.951;SOR=0.588;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,33:56:99:921,0,507
chr2	84861952	rs11893476	C	T	327.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:99,0,159
chr2	84864206	rs6709260	C	G	104.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.328;SOR=0.495;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:113,0,146
chr2	84867882	rs7573027	G	A	99.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:58:107,0,58
chr2	84868908	rs11675605	A	C	212.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.674;SOR=0.859;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:72,0,68
chr2	84880445	rs28375417	G	C	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DB;DP=53;ExcessHet=3.0103;FS=1.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.68;ReadPosRankSum=-9.790e-01;SOR=0.990;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,16:53:99:363,0,984
chr2	84897361	rs12470102	T	A	1176.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=6.804;VQSLOD=24.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	84897501	rs17025409	A	G	256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-3.200e-01;SOR=0.804;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:265,0,233
chr2	84897517	rs1881095	A	G	4590.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=0.748;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:698,69,0
chr2	84899220	rs140501659	G	A	154.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.792;SOR=0.527;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:23:163,0,23
chr2	84899360	rs4832106	G	A	2383.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903e+00;DB;DP=30;ExcessHet=3.0103;FS=1.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=1.81;SOR=1.092;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:546,0,317
chr2	84899761	rs4831983	C	G	874.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.310e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.24;ReadPosRankSum=-1.532e+00;SOR=2.833;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:200,0,167
chr2	84913990	rs1192306	A	G	70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=2.303;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	84915469	rs41490447	A	T	314.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=1.02;SOR=0.723;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:212,0,246
chr2	84924823	rs78190897	T	C	2409.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=107;ExcessHet=3.9794;FS=1.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.658;SOR=0.731;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,48:107:99:1152,0,1368
chr2	84930815	rs11424668	G	GT	180.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e-01;DB;DP=2;ExcessHet=1.5490;FS=7.160;MQ=60.00;MQRankSum=0.00;QD=12.04;ReadPosRankSum=-5.540e-01;SOR=3.611;VQSLOD=2.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr2	84932720	rs61750773	A	G	928.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.581;DB;DP=88;ExcessHet=3.0103;FS=0.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=-7.920e-01;SOR=0.824;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,38:88:99:937,0,1301
chr2	84933121	rs79709094	C	G	138.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	84940477	rs4832108	T	C	943.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.289e+00;DB;DP=20;ExcessHet=1.5490;FS=2.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=1.43;SOR=1.739;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:733,60,0
chr2	84945614	rs3810820	A	C	71.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=0.431;SOR=1.179;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:80,0,30
chr2	84950006	rs1192336	T	C	598.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=2.584;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:615,48,0
chr2	84955129	rs75124059	T	G	393.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=1.78;SOR=0.430;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:402,0,304
chr2	84972491	rs55662731	C	T	346.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=-1.242e+00;SOR=1.473;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:212,0,106
chr2	84972573	rs1192386	G	A	239.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=2.303;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	84989696	rs73943394	T	A	100.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-8.420e-01;SOR=1.329;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:109,0,66
chr2	85011776	rs73946004	G	T	520.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=33;ExcessHet=3.0103;FS=3.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-1.810e-01;SOR=1.751;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:529,0,362
chr2	85012156	rs1427490	C	T	147.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.64;SOR=3.258;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr2	85014460	rs78895235	A	G	964.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.480e-01;DB;DP=83;ExcessHet=3.0103;FS=0.837;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.023;SOR=0.586;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,40:83:99:973,0,1138
chr2	85014641	rs11404744	C	CA	320.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=2.303;VQSLOD=6.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:29:337,29,0
chr2	85023554	rs754273	A	G	1328.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=0.739;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1345,129,0
chr2	85023653	rs754274	G	C	1128.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=1.270;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1145,111,0
chr2	85024731	rs1192395	C	T	2057.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.720e-01;DB;DP=137;ExcessHet=3.0103;FS=2.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=1.35;SOR=0.505;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,80:137:99:2066,0,1411
chr2	85033032	rs1192369	A	G	176.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.541;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=-1.434e+00;SOR=0.859;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:185,0,169
chr2	85039563	rs2276610	C	T	1118.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-7.500e-01;SOR=0.668;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1127,0,1276
chr2	85040393	rs1192362	G	C	908.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.93;SOR=2.670;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:925,78,0
chr2	85040418	rs1192361	A	G	336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.430e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=-1.360e-01;SOR=1.244;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:345,0,208
chr2	85041295	rs1192360	T	C	104.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:113,0,111
chr2	85041316	rs1192359	T	C	149.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=3.258;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr2	85046209	rs112712194	A	AAAG	90.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.52;ReadPosRankSum=1.35;SOR=0.148;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:99:99,0,485
chr2	85046402	rs112294720	A	AC	699.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=-9.130e-01;SOR=0.693;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,24:46:99:708,0,638
chr2	85049016	rs374787167	G	A	854.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.189e+00;DB;DP=53;ExcessHet=3.0103;FS=1.147;MQ=60.00;MQRankSum=0.00;QD=16.12;ReadPosRankSum=-6.370e-01;SOR=1.032;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,32:53:99:863,0,554
chr2	85051122	rs1649292	G	A	2400.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=81;ExcessHet=0.4576;FS=2.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.63;ReadPosRankSum=1.33;SOR=1.439;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:5,76:81:99:2417,107,0
chr2	85051518	rs200457159	T	TC	66.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:75:75,0,110
chr2	85059063	rs1192273	G	A	155.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-2.065e+00;SOR=0.223;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:164,0,183
chr2	85059227	rs61744273	C	T	936.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-8.210e-01;SOR=0.697;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,41:82:99:945,0,900
chr2	85066245	rs736711	G	A	148.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=11;ExcessHet=3.0103;FS=6.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.456;SOR=0.061;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:157,0,122
chr2	85108252	rs34667238	G	GC	3670.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=3.523;VQSLOD=6.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1084,87,0
chr2	85108309	rs141756221	T	C	107.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-02;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.73;ReadPosRankSum=0.00;SOR=0.412;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:116,0,222
chr2	85133216	rs7148	G	A	2353.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.260e-01;DB;DP=234;ExcessHet=3.0103;FS=6.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=1.80;SOR=1.088;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,104:234:99:2362,0,3232
chr2	85133320	rs12471929	C	T	2524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.897e+00;DB;DP=258;ExcessHet=3.0103;FS=4.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-5.890e-01;SOR=0.880;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:149,109:258:99:2533,0,4412
chr2	85360828	.	GGGC	G	1981.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DP=27;ExcessHet=6.9897;FS=1.268;MQ=60.00;MQRankSum=0.00;QD=23.88;ReadPosRankSum=0.464;SOR=1.018;VQSLOD=6.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:594,0,480
chr2	85361101	rs116356120	T	G	3087.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;DB;DP=269;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-1.017e+00;SOR=0.706;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:134,135:269:99:3096,0,3035
chr2	85510777	rs7574856	A	G	2567.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=65;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-2.770e-01;SOR=0.698;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,26:65:99:704,0,934
chr2	85510965	rs7574999	A	G	1077.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=-5.720e-01;SOR=0.735;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:203,0,249
chr2	85511021	rs62162678	T	C	242.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=1.44;SOR=0.693;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:127,0,137
chr2	85531579	rs11900333	C	A	1402.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-1.426e+00;SOR=1.211;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,27:28:72:938,72,0
chr2	85532205	rs6741339	C	G	2352.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.24;SOR=2.165;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1215,105,0
chr2	85549868	rs4240199	A	G	3000.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.341e+00;DB;DP=60;ExcessHet=1.5490;FS=2.958;MQ=60.00;MQRankSum=0.00;QD=27.53;ReadPosRankSum=-4.650e-01;SOR=1.080;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2219,180,0
chr2	85549874	rs3637	A	G	1397.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.267;DB;DP=57;ExcessHet=3.9794;FS=3.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.998;SOR=1.054;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:616,0,836
chr2	85552186	rs7572750	C	A	1491.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.259e+00;DB;DP=37;ExcessHet=1.5490;FS=6.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=1.82;SOR=0.208;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1092,110,0
chr2	85552261	rs2292653	A	G	303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=-5.440e-01;SOR=0.346;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:312,0,198
chr2	85553784	rs1044973	C	T	5449.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.891e+00;DB;DP=110;ExcessHet=1.5490;FS=2.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=-2.087e+00;SOR=0.503;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3674,330,0
chr2	85554080	rs4247303	G	A	16300.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.31;DB;DP=334;ExcessHet=1.5490;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=-1.410e-01;SOR=0.684;VQSLOD=7.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,334:334:99:10928,1000,0
chr2	85555262	rs10460585	T	G	306.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=-3.190e-01;SOR=3.056;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr2	85555277	rs10460586	G	A	189.38	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	85570186	rs4832001	G	A	128.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.260e-01;DB;DP=7;ExcessHet=3.9794;FS=2.682;MQ=59.27;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=5.57;ReadPosRankSum=0.159;SOR=0.178;VQSLOD=-1.254e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,3:7:99:101,0,151
chr2	85570731	rs140433565	A	G	1109.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148e+00;DB;DP=144;ExcessHet=3.0103;FS=0.650;MQ=57.72;MQRankSum=0.610;QD=7.70;ReadPosRankSum=1.07;SOR=0.759;VQSLOD=-1.527e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,52:144:99:1118,0,2386
chr2	85570942	rs9309620	G	C	2198.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=36;ExcessHet=1.5490;FS=5.594;MQ=59.27;MQRankSum=2.98;NEGATIVE_TRAIN_SITE;QD=32.34;ReadPosRankSum=-1.612e+00;SOR=0.206;VQSLOD=-2.623e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,24:36:99:894,0,371
chr2	85570978	rs28619418	A	G	169.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=14;ExcessHet=3.0103;FS=6.560;MQ=57.35;MQRankSum=-2.205e+00;NEGATIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=-2.633e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,5:14:99:0|1:85570978_A_G:178,0,351:85570978
chr2	85570999	rs6753373	G	C	90.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973e+00;DB;DP=11;ExcessHet=3.0103;FS=7.404;MQ=56.61;MQRankSum=-2.744e+00;NEGATIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=-8.860e-01;SOR=2.800;VQSLOD=-2.949e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,3:11:99:0|1:85570978_A_G:99,0,363:85570978
chr2	85571001	.	A	G	93.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.299e+00;DP=11;ExcessHet=3.0103;FS=7.404;MQ=56.61;MQRankSum=-2.744e+00;NEGATIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=-1.083e+00;SOR=2.800;VQSLOD=-2.950e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,3:11:99:0|1:85570978_A_G:102,0,327:85570978
chr2	85571005	rs6724470	A	T	93.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=10;ExcessHet=3.0103;FS=7.782;MQ=56.26;MQRankSum=-2.638e+00;NEGATIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=-2.037e+00;SOR=2.788;VQSLOD=-3.126e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,3:10:99:0|1:85570978_A_G:102,0,327:85570978
chr2	85571458	rs140300131	C	T	2116.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=201;ExcessHet=3.0103;FS=1.804;MQ=59.90;MQRankSum=1.26;QD=10.53;ReadPosRankSum=0.071;SOR=0.829;VQSLOD=0.660;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:113,88:201:99:2125,0,2722
chr2	85571710	rs4832171	A	G	4941.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=34.84;SOR=3.659;VQSLOD=4.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2408,207,0
chr2	85572728	rs3770099	C	T	131.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=0.253;SOR=3.258;VQSLOD=17.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:31:140,0,31
chr2	85573033	rs908302	G	A	8008.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.02;SOR=0.898;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4165,427,0
chr2	85573049	rs908304	G	A	3236.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DB;DP=133;ExcessHet=3.9794;FS=1.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=1.03;SOR=0.804;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,71:133:99:1760,0,1538
chr2	85573403	rs908306	C	A	794.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=3.258;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:418,33,0
chr2	85576451	rs10590946	GTC	G	717.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=28;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=-1.271e+00;SOR=0.235;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,18:28:99:726,0,371
chr2	85595818	rs955592	C	T	794.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.108e+00;DB;DP=82;ExcessHet=3.0103;FS=1.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-6.870e-01;SOR=0.919;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,41:82:99:803,0,1024
chr2	85616758	rs17026285	T	C	1331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=43;ExcessHet=3.9794;FS=7.226;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.324;SOR=1.725;VQSLOD=5.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:696,0,639
chr2	85622059	rs6886	T	C	6810.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.370e-01;DB;DP=94;ExcessHet=3.0103;FS=0.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.68;ReadPosRankSum=2.29;SOR=0.672;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2849,282,0
chr2	85625222	rs6885	T	G	2401.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=86;ExcessHet=3.9794;FS=2.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=2.12;SOR=0.922;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1266,0,1032
chr2	85625513	rs2271625	T	A	68.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=2.303;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	85626479	rs34063934	G	C	3951.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=127;ExcessHet=3.9794;FS=13.983;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.195;SOR=0.246;VQSLOD=1.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,77:127:99:2337,0,1341
chr2	85626524	rs35666320	C	T	2187.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.258e+00;DB;DP=63;ExcessHet=3.9794;FS=9.258;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-9.820e-01;SOR=0.083;VQSLOD=4.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,36:63:99:1130,0,1005
chr2	85626581	rs35391999	A	T	2733.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.59;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.16;ReadPosRankSum=2.21;SOR=0.932;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1118,81,0
chr2	85628556	rs2002444	A	G	1425.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=53;ExcessHet=3.9794;FS=0.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.700;SOR=0.844;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:801,0,938
chr2	85628983	rs2229668	C	T	5085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=212;ExcessHet=3.9794;FS=3.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.556;SOR=0.862;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,102:212:99:2424,0,2687
chr2	85629330	rs75351468	C	A	653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.451e+00;DB;DP=49;ExcessHet=3.0103;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=1.59;SOR=0.452;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:662,0,636
chr2	85662017	rs2271628	G	A	215	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=-1.150e+00;SOR=1.179;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:106,0,33
chr2	85662636	rs7589663	C	T	1978.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e-01;DB;DP=60;ExcessHet=3.9794;FS=3.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-1.050e-01;SOR=1.044;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,22:60:99:633,0,1127
chr2	85662650	rs6547618	A	G	3038.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=48;ExcessHet=6.9897;FS=1.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=-3.260e-01;SOR=0.536;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,16:48:99:438,0,842
chr2	85769246	rs1078005	G	A	17516.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=0.788;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5418,535,0
chr2	85779717	.	A	G	918.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DP=89;ExcessHet=3.0103;FS=0.815;MQ=60.00;MQRankSum=0.00;QD=10.32;ReadPosRankSum=-2.080e-01;SOR=0.843;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,37:89:99:927,0,1258
chr2	85781318	rs1254896	T	G	6804.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=0.968;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1650,156,0
chr2	85788140	rs1254898	C	T	1274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;DB;DP=53;ExcessHet=3.9794;FS=1.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.189;SOR=0.503;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:574,0,839
chr2	85788910	.	C	CCGTCCCTG	164.07	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.66;SOR=3.258;VQSLOD=4.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	85804540	rs1254899	A	G	2498.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=1.931;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:721,60,0
chr2	85807081	rs373965843	AT	A	52.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=8;ExcessHet=3.9794;FS=4.032;MQ=60.00;MQRankSum=0.00;QD=1.63;ReadPosRankSum=1.25;SOR=0.075;VQSLOD=4.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,2:8:25:25,0,123
chr2	85835824	rs5832651	CA	C	38.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:7:45,0,7
chr2	85848747	rs35865728	CT	C	1285.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.640e-01;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.505;SOR=0.747;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,11:23:99:215,0,178
chr2	85863394	rs4416212	C	T	192.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,56
chr2	85866577	.	CT	C	226.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.330e-01;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.78;MQRankSum=0.546;POSITIVE_TRAIN_SITE;QD=3.60;ReadPosRankSum=0.788;SOR=0.354;VQSLOD=1.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:19:88:88,0,211
chr2	85890771	rs893159	T	G	9055.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=1.095;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2048,183,0
chr2	85890889	.	G	A	809.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.510e-01;DP=84;ExcessHet=3.0103;FS=5.728;MQ=60.00;MQRankSum=0.00;QD=9.63;ReadPosRankSum=-8.020e-01;SOR=0.742;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,34:84:99:818,0,1343
chr2	85893616	rs147140768	CTG	C,CTGTG	1815.53	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.710e-01;DB;DP=34;ExcessHet=3.0103;FS=2.504;MQ=60.00;MQRankSum=0.00;QD=23.28;ReadPosRankSum=0.403;SOR=1.781;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,13,13:34:99:758,352,491,422,0,554
chr2	85893741	rs1130866	G	A	7273.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=198;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=-5.820e-01;SOR=0.685;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,90:198:99:2004,0,2657
chr2	85894308	rs3024798	G	T	1523.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DB;DP=71;ExcessHet=3.9794;FS=10.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=-1.273e+00;SOR=1.359;VQSLOD=17.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,29:71:99:642,0,1025
chr2	85895338	rs2077079	T	G	1335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.105;SOR=0.680;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,28:48:99:644,0,501
chr2	85921353	rs1866140	G	T	573.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.710e-01;DB;DP=23;ExcessHet=3.9794;FS=5.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-1.240e-01;SOR=2.004;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:293,0,376
chr2	85921389	rs1866139	G	C	1068.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-01;DB;DP=34;ExcessHet=3.9794;FS=22.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.851;SOR=3.180;VQSLOD=10.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,19:34:99:613,0,438
chr2	85921734	rs55813598	G	GC	2621.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=5.311;VQSLOD=5.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,26:26:78:926,78,0
chr2	85921761	rs1866138	A	G	791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-3.810e-01;SOR=1.121;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:284,0,212
chr2	85921992	rs2043760	T	C	1850.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.272e+00;DB;DP=24;ExcessHet=3.9794;FS=9.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=0.903;SOR=0.105;VQSLOD=19.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:830,72,0
chr2	85922860	rs2070966	G	T	273.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.529e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.692;SOR=0.818;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr2	85924729	rs11127	C	T	11518.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.455;DB;DP=275;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=-8.630e-01;SOR=0.683;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,275:275:99:8128,823,0
chr2	85924899	rs1437742	T	A	5226.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.540e+00;DB;DP=86;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=1.82;SOR=0.719;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2952,257,0
chr2	85924989	rs1437743	C	T	2227.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=34;ExcessHet=1.5490;FS=5.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=-1.243e+00;SOR=1.345;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1152,102,0
chr2	85925084	rs1437744	G	A	439.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.58;DB;DP=6;ExcessHet=1.5490;FS=2.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=0.224;SOR=0.283;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:214,18,0
chr2	85925386	rs1866141	T	C	533.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.056e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=2.54;SOR=1.136;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr2	85925529	rs4240200	A	G	4291.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=91;ExcessHet=1.5490;FS=3.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.489;SOR=0.455;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2921,273,0
chr2	85925667	rs4240201	G	A	5767.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.789e+00;DB;DP=140;ExcessHet=1.5490;FS=1.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=-6.380e-01;SOR=0.585;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4112,416,0
chr2	85925680	rs4240202	T	G	5568.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.608e+00;DB;DP=127;ExcessHet=1.5490;FS=0.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.373;SOR=0.602;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4029,381,0
chr2	85925756	rs7908	C	G	4557.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.049e+00;DB;DP=101;ExcessHet=1.5490;FS=2.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=0.658;SOR=0.888;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3304,303,0
chr2	85925848	rs12845	C	G	3942.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.25;DB;DP=89;ExcessHet=1.5490;FS=2.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=0.340;SOR=0.520;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3012,266,0
chr2	85926077	rs57942827	T	TGCG	1633.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.128;DB;DP=25;ExcessHet=1.5490;FS=4.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=-9.600e-01;SOR=1.525;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1125,75,0
chr2	85926142	rs10192752	T	G	664.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.86;DB;DP=15;ExcessHet=1.5490;FS=2.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=0.546;SOR=0.201;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:595,45,0
chr2	85926190	rs10203826	A	C	210.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=2.303;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:227,18,0
chr2	85926218	rs10180445	G	C	79.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.66;SOR=1.179;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
chr2	85926238	rs10180451	G	T	37.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.81;SOR=0.693;VQSLOD=15.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	85981761	rs17851881	T	C	15224.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.919e+00;DB;DP=168;ExcessHet=3.0103;FS=0.890;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.09;ReadPosRankSum=-5.560e-01;SOR=0.799;VQSLOD=6.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,168:168:99:5829,504,0
chr2	85990895	rs4832196	T	C	665.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.076e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=-1.452e+00;SOR=1.893;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	85990944	rs61491730	C	CGTGTGTGTGTGT,CGTGTGTGTGTGTGT	1718.15	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.63;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=57.81;MQRankSum=0.00;QD=29.81;ReadPosRankSum=0.761;SOR=2.670;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,5:12:97:594,139,97,194,0,152
chr2	86010847	rs55974755	G	T	138.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-4.140e-01;SOR=0.330;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:73:147,0,73
chr2	86014345	rs736991	G	A	2493.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=194;ExcessHet=3.0103;FS=0.523;MQ=59.97;MQRankSum=-9.790e-01;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.959;SOR=0.651;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:96,98:194:99:2502,0,2176
chr2	86071393	rs2280316	G	C	801.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346e+00;DB;DP=22;ExcessHet=1.5490;FS=4.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=-6.600e-01;SOR=1.765;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:351,0,295
chr2	86075582	rs11694145	C	T	2230.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.712e+00;DB;DP=46;ExcessHet=1.5490;FS=6.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-3.700e-02;SOR=0.202;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,33:46:99:731,0,280
chr2	86088311	rs1138484	T	C	2960.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.620e-01;DB;DP=53;ExcessHet=1.5490;FS=1.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=-2.851e+00;SOR=0.977;VQSLOD=22.50;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:29,24:53:99:618,0,766
chr2	86090221	rs7558479	G	A	222.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=3.912;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	86094686	rs62147538	C	T	3550.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=96;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=0.051;SOR=0.675;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1283,0,1166
chr2	86258784	rs2278536	T	G	3414.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=78;ExcessHet=1.5490;FS=1.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=0.516;SOR=0.957;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1037,0,866
chr2	86259443	rs2276626	C	T	10554.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.116e+00;DB;DP=131;ExcessHet=3.0103;FS=3.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=0.735;SOR=0.731;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4075,393,0
chr2	86259741	rs4832234	C	T	248.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=57.88;POSITIVE_TRAIN_SITE;QD=28.93;SOR=4.174;VQSLOD=5.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	86266274	rs2289237	C	G	289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.776;SOR=1.022;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:298,0,328
chr2	86271073	rs34478066	G	A	560.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=0.00;SOR=2.531;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,158
chr2	86272191	rs7572386	G	A	673.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.010e-01;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.96;ReadPosRankSum=-1.267e+00;SOR=1.609;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:366,0,266
chr2	86272758	rs1561328	G	A	781.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=54;ExcessHet=3.0103;FS=3.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-8.710e-01;SOR=1.329;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,30:54:99:790,0,504
chr2	86275985	rs2289239	A	G	6408.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=101;ExcessHet=1.5490;FS=1.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=1.07;SOR=0.563;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,47:101:99:1373,0,1522
chr2	86279837	rs35618928	G	C	1628.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.58;ReadPosRankSum=0.402;SOR=1.649;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:201,0,312
chr2	86292656	rs311563	C	T	4818.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=66;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=0.521;SOR=0.672;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,37:66:99:971,0,789
chr2	86301978	rs3770075	T	C	369.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=1.28;SOR=1.765;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,146
chr2	86302103	rs3815840	A	G	2915.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=38;ExcessHet=3.9794;FS=1.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.92;ReadPosRankSum=0.092;SOR=0.541;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,25:38:99:625,0,323
chr2	86305123	rs2288117	T	C	4806.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.27;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.31;ReadPosRankSum=1.29;SOR=0.763;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1843,153,0
chr2	86305534	rs74607112	T	C	84.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.842;SOR=1.329;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:93,0,65
chr2	86307884	rs3217271	CAG	C	183.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-8.800e-01;SOR=0.551;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:192,0,241
chr2	86310110	rs2288118	C	T	2062.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=34;ExcessHet=3.9794;FS=6.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=-2.950e-01;SOR=1.365;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:377,0,412
chr2	86310511	rs60398779	A	AT	95.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.94;ReadPosRankSum=-1.550e-01;SOR=0.223;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:12:99:104,0,287
chr2	86315741	rs2288120	C	T	2185.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=-4.240e-01;SOR=0.841;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:506,0,288
chr2	86316174	rs1991106	T	C	77.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.63;SOR=2.303;VQSLOD=18.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	86316834	rs2288121	G	T	384.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=0.253;SOR=1.473;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,1:3:29:29,0,80
chr2	86317037	rs4832242	G	C	3000.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250e-01;DB;DP=40;ExcessHet=3.9794;FS=0.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=0.248;SOR=0.627;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,25:40:99:644,0,385
chr2	86326133	rs11127015	A	G	200.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.68;SOR=2.584;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
chr2	86332656	rs4832244	T	G	1149.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=1.000e-03;SOR=1.085;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:85:296,0,85
chr2	86332809	rs4832245	G	A	5261.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.32;DB;DP=111;ExcessHet=3.9794;FS=0.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-4.970e-01;SOR=0.738;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,48:111:99:1350,0,1632
chr2	86332939	rs191218064	T	C	2103.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=165;ExcessHet=3.0103;FS=2.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=1.43;SOR=0.515;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,86:165:99:2112,0,1855
chr2	86333193	rs2303340	T	C	170.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DB;DP=12;ExcessHet=3.0103;FS=2.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.873;SOR=0.136;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:179,0,262
chr2	86334199	rs2367201	G	A	2902.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974e+00;DB;DP=34;ExcessHet=3.9794;FS=1.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=-1.060e-01;SOR=0.501;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:569,0,368
chr2	86334386	rs3810827	A	G	952.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028e+00;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.589;SOR=0.735;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,35:54:99:961,0,454
chr2	86334566	rs3810828	G	T	550.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.37;ReadPosRankSum=-1.210e+00;SOR=2.712;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr2	86335208	rs11679343	T	C	740.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.50;ReadPosRankSum=0.135;SOR=1.981;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:143,0,146
chr2	86335249	rs368815233	TA	T	264.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380e-01;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.72;MQRankSum=0.717;QD=5.30;ReadPosRankSum=-5.600e-02;SOR=0.693;VQSLOD=0.422;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,5:19:47:47,0,227
chr2	86335718	rs979940	G	A	583.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=0.00;SOR=0.582;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:255,21,0
chr2	86337930	rs1075622	T	C	1025.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=8;ExcessHet=3.9794;FS=2.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=1.63;SOR=1.402;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:55:55,0,187
chr2	86343476	rs4832022	C	A	1014.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=18;ExcessHet=3.9794;FS=4.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=0.889;SOR=0.195;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:332,0,232
chr2	86343494	rs4832248	G	A	1229.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=1.38;SOR=0.779;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:305,0,304
chr2	86344367	rs2059353	T	C	2287.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.33;ReadPosRankSum=-1.670e-01;SOR=0.859;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:905,72,0
chr2	86346180	rs2303339	G	A	959.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=1.61;SOR=0.656;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,36:62:99:968,0,568
chr2	86346308	rs6715623	G	A	2027.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.201e+00;DB;DP=21;ExcessHet=3.0103;FS=7.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.56;ReadPosRankSum=1.31;SOR=0.094;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:761,63,0
chr2	86348960	rs4832249	G	A	324.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=1.5490;FS=7.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=0.366;SOR=4.615;VQSLOD=13.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:56:170,0,56
chr2	86350664	rs1025104	A	G	864.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=0.566;SOR=2.147;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:86:283,0,86
chr2	86352010	rs4832250	G	T	2131.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=0.615;SOR=0.964;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:400,0,284
chr2	86352037	rs75544197	A	G	395.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.483e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-2.570e-01;SOR=0.495;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:404,0,437
chr2	86352785	rs4618054	G	A	3652.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DB;DP=56;ExcessHet=3.9794;FS=1.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=0.401;SOR=0.847;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,17:56:99:365,0,1117
chr2	86352825	rs6740228	C	T	4404.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980e-01;DB;DP=68;ExcessHet=3.9794;FS=0.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=-9.380e-01;SOR=0.645;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,23:68:99:540,0,1219
chr2	86353150	rs3731820	G	C	604.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.08;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.30;ReadPosRankSum=2.03;SOR=1.179;VQSLOD=0.400;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:22:172,0,22
chr2	86357960	rs35886251	AT	A	377.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=19;ExcessHet=3.9794;FS=5.633;MQ=60.00;MQRankSum=0.00;QD=9.67;ReadPosRankSum=2.30;SOR=0.157;VQSLOD=4.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,15:19:42:318,0,42
chr2	86358459	rs1834163	C	T	252.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:58:107,0,58
chr2	86359405	rs1559515	G	T	6732.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DB;DP=101;ExcessHet=3.9794;FS=7.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=-8.500e-02;SOR=1.097;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,37:101:99:918,0,1718
chr2	86359745	rs11333311	GT	G	487.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.53;MQRankSum=1.34;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=2.10;SOR=1.123;VQSLOD=1.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:15:50:107,0,50
chr2	86360225	rs2241438	A	G	836.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.87;ReadPosRankSum=0.381;SOR=2.066;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:78:283,0,78
chr2	86360573	rs2241437	T	G	1162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.603;SOR=0.770;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,44:73:99:1171,0,657
chr2	86362204	rs7606421	C	T	1755.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.303e+00;DB;DP=40;ExcessHet=3.9794;FS=1.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.381;SOR=0.519;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:491,0,610
chr2	86363074	rs3770069	A	G	7081.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=117;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=0.347;SOR=0.685;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,50:117:99:1199,0,1694
chr2	86363855	rs7558040	G	C	1456.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.96;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=0.176;SOR=0.665;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:350,24,0
chr2	86364706	rs56274257	TG	T	1257.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.890e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.59;ReadPosRankSum=-1.305e+00;SOR=3.160;VQSLOD=4.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:321,27,0
chr2	86371883	rs8244	T	C	3214.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204e+00;DB;DP=86;ExcessHet=1.5490;FS=3.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.39;SOR=0.434;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,47:86:99:1098,0,937
chr2	86385668	rs1057893	T	C	1686.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=15;ExcessHet=1.5490;FS=6.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.14;ReadPosRankSum=0.791;SOR=2.584;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,8:15:99:0|1:86385668_T_C:315,0,431:86385668
chr2	86385886	rs6739460	A	G	6065.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=1.286;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1647,162,0
chr2	86389421	rs10168635	A	G	165.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=8;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.992;SOR=2.833;VQSLOD=19.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:64:174,0,64
chr2	86398074	rs2288115	A	G	2226.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090e-01;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=-1.507e+00;SOR=0.582;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:563,0,273
chr2	86398206	rs2288114	C	T	525.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=5;ExcessHet=1.5490;FS=2.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.87;ReadPosRankSum=0.524;SOR=1.492;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,112
chr2	86398291	rs2288113	G	A	538.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=-1.415e+00;SOR=0.399;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:130,0,141
chr2	86398785	rs12477274	G	T	214.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:59:71,0,59
chr2	86406438	rs6547663	A	G	1819.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898e+00;DB;DP=31;ExcessHet=1.5490;FS=4.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-2.230e-01;SOR=0.272;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:281,0,616
chr2	86406556	rs17027011	C	T	1101.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DB;DP=98;ExcessHet=3.0103;FS=2.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-4.000e-03;SOR=0.446;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,44:98:99:1110,0,1348
chr2	86406889	rs3770060	G	A	1146.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-5.750e-01;SOR=0.941;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,7:25:99:157,0,554
chr2	86408385	rs6731995	A	G	2131.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428e+00;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=0.621;SOR=0.613;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:537,0,753
chr2	86419932	rs12996308	C	G	2263.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.163e+00;DB;DP=37;ExcessHet=1.5490;FS=5.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=-1.388e+00;SOR=0.220;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:565,0,561
chr2	86420255	rs11897696	G	A	1568.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-1.310e-01;SOR=1.421;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:399,0,355
chr2	86422416	rs17551822	T	C	8901.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780e-01;DB;DP=200;ExcessHet=1.5490;FS=0.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=-1.491e+00;SOR=0.739;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:132,68:200:99:0|1:86422416_T_C:2521,0,7070:86422416
chr2	86422421	rs17551815	T	G	9126.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.880e-01;DB;DP=208;ExcessHet=1.5490;FS=2.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=-1.876e+00;SOR=0.848;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:135,73:208:99:0|1:86422416_T_C:2569,0,7065:86422416
chr2	86422660	rs9309632	C	T	1096.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.091e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=-8.630e-01;SOR=2.303;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:204,0,348
chr2	86433240	rs10901	C	T	2110.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.109e+00;DB;DP=39;ExcessHet=1.5490;FS=1.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=-2.960e-01;SOR=1.371;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:502,0,687
chr2	86433591	rs12714177	A	G	769.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=10;ExcessHet=1.5490;FS=2.607;MQ=59.56;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=-1.465e+00;SOR=0.258;VQSLOD=3.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:136,0,216
chr2	86437551	rs7565645	T	G	1462.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.891e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=1.85;SOR=0.611;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:688,63,0
chr2	86440963	rs4832028	G	A	529.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=-6.970e-01;SOR=2.712;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:196,15,0
chr2	86478980	rs4832031	T	C	411.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=0.00;SOR=1.911;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:72:72,0,74
chr2	86479035	rs12988844	A	G	892.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.77;MQRankSum=0.524;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=-9.100e-02;SOR=1.681;VQSLOD=0.434;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:143,0,208
chr2	86479287	rs17438687	G	T	2608.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-01;DB;DP=35;ExcessHet=3.9794;FS=0.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=0.809;SOR=0.805;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:478,0,443
chr2	86481835	rs2276625	C	T	1226.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.19;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=0.903;SOR=0.707;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:223,0,235
chr2	86491245	rs1863056	C	T	2347.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=29;ExcessHet=3.9794;FS=1.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.283;SOR=0.948;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,9:29:99:210,0,465
chr2	86509079	rs3821016	T	C	449.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=3.767;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr2	86509267	rs1863058	G	A	3072.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=49;ExcessHet=3.9794;FS=0.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=1.07;SOR=0.645;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,18:49:99:346,0,723
chr2	86509388	rs1863059	T	G	3018.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=38;ExcessHet=3.9794;FS=0.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=1.70;SOR=0.798;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:507,0,505
chr2	86565415	rs148469337	CCTT	C	63.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-4.310e-01;SOR=0.307;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,192
chr2	86668928	.	G	T	39.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=19.59;SOR=0.693;VQSLOD=13.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	86682417	.	CT	C	162.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048e+00;DP=30;ExcessHet=3.9794;FS=8.529;MQ=59.92;MQRankSum=0.00;QD=2.91;ReadPosRankSum=-4.500e-02;SOR=1.907;VQSLOD=2.88;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,6:30:60:60,0,505
chr2	86683539	rs11431031	A	AT	317.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=20;ExcessHet=6.9897;FS=1.180;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.75;ReadPosRankSum=0.423;SOR=0.527;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:122,0,132
chr2	86683642	rs2030259	A	G	3969.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=48;ExcessHet=3.0103;FS=3.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=0.363;SOR=0.765;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1515,142,0
chr2	86691250	rs12714187	G	A	5834.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=82;ExcessHet=3.0103;FS=2.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=1.40;SOR=0.524;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2527,246,0
chr2	86691568	rs11127041	T	A	158.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.03;SOR=1.609;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	86705565	rs2292887	T	C	2082.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=38;ExcessHet=6.9897;FS=6.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-4.670e-01;SOR=0.328;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:697,0,454
chr2	86707313	rs61748134	G	A	777.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670e-01;DB;DP=38;ExcessHet=3.0103;FS=1.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=1.21;SOR=0.368;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,28:38:99:786,0,239
chr2	86707504	rs4832290	T	C	6328.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;DB;DP=83;ExcessHet=3.0103;FS=0.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=-1.351e+00;SOR=0.604;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2450,249,0
chr2	86713156	rs5832684	C	CA	528.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.91;ReadPosRankSum=-9.670e-01;SOR=4.047;VQSLOD=4.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr2	86716919	rs75816635	A	G	441.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DB;DP=38;ExcessHet=3.0103;FS=1.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-1.200e-01;SOR=1.206;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,15:38:99:450,0,620
chr2	86734778	rs3731811	C	T	577.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.430e-01;DB;DP=58;ExcessHet=3.0103;FS=3.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-6.560e-01;SOR=1.189;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,24:58:99:586,0,963
chr2	86737334	rs2276624	A	G	102.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.180;SOR=0.495;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:111,0,149
chr2	86737649	rs966477	G	A	3377.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.230e-01;DB;DP=65;ExcessHet=3.9794;FS=2.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=2.99;SOR=0.919;VQSLOD=22.42;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1947,194,0
chr2	86756099	rs74496310	C	T	121.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:130,0,24
chr2	86756209	rs1036940	C	G	3628.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=23;ExcessHet=3.0103;FS=2.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.91;ReadPosRankSum=-4.940e-01;SOR=0.266;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:860,68,0
chr2	86756280	rs9284788	G	A	4506.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=97;ExcessHet=6.9897;FS=3.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.700;SOR=0.943;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,39:97:99:1032,0,1465
chr2	86830876	rs3755000	C	A	565.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DB;DP=53;ExcessHet=3.0103;FS=2.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.706;SOR=0.357;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:574,0,705
chr2	86832688	rs76449774	A	G	158.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-1.191e+00;SOR=0.446;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:167,0,245
chr2	86847269	rs308900	T	C	66.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:72,0,31
chr2	86850022	rs396354	T	C	4679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.670e-01;DB;DP=64;ExcessHet=3.0103;FS=0.973;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=1.58;SOR=0.527;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2230,192,0
chr2	86850978	rs3810829	C	T	1933.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=166;ExcessHet=3.0103;FS=1.930;MQ=60.00;MQRankSum=0.00;QD=11.65;ReadPosRankSum=1.34;SOR=0.869;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,78:166:99:1942,0,2149
chr2	86851130	rs113410794	C	G	222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-4.540e-01;SOR=0.368;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:231,0,353
chr2	86947783	rs76239019	C	T	4994.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=0.4576;FS=0.000;MQ=53.96;QD=30.64;SOR=1.250;VQSLOD=0.488;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2359,231,0
chr2	86978895	rs4832311	G	T	403.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=-4.310e-01;SOR=2.833;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:68:139,0,68
chr2	86979093	rs10186663	G	A	2722.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DB;DP=45;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.68;ReadPosRankSum=-2.760e-01;SOR=0.736;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,26:45:99:680,0,429
chr2	86992337	rs3840984	T	TAA	4651.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.69;SOR=1.725;VQSLOD=4.71;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2331,156,0
chr2	87015633	rs71378806	T	TGA	2980.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.33;SOR=2.267;VQSLOD=4.93;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1684,114,0
chr2	87016506	rs3020726	A	G	2089.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DB;DP=180;ExcessHet=3.0103;FS=0.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.238;SOR=0.740;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,86:180:99:2098,0,2368
chr2	87016922	rs142496274	G	GCGCCCC	3748.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e-01;DB;DP=86;ExcessHet=3.9794;FS=1.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=-9.800e-02;SOR=0.824;VQSLOD=7.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1707,0,2994
chr2	87017034	rs2944251	C	G	533.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=0.831;SOR=1.609;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:542,0,570
chr2	87017069	rs2944250	C	G	609.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=1.31;SOR=1.382;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:359,0,491
chr2	87048630	rs13024420	A	G	145.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=-6.520e-01;SOR=0.941;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:96:154,0,96
chr2	87048677	rs13024609	A	G	169.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.499e+00;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-1.493e+00;SOR=0.141;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:178,0,282
chr2	87048702	rs13001400	T	G	3304.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.69;SOR=2.636;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:970,75,0
chr2	87049281	rs79219669	G	A	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e+00;DB;DP=13;ExcessHet=3.0103;FS=3.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=0.169;SOR=0.116;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:91:241,0,91
chr2	87060318	.	CT	C	66.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.47;MQRankSum=0.00;QD=4.41;ReadPosRankSum=0.414;SOR=0.399;VQSLOD=5.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,3:8:52:55,0,52
chr2	87060340	.	T	C	54.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DP=9;ExcessHet=3.0103;FS=6.532;MQ=58.04;MQRankSum=-1.221e+00;NEGATIVE_TRAIN_SITE;QD=6.04;ReadPosRankSum=0.812;SOR=0.016;VQSLOD=-1.688e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:87060325_T_TCC:63,0,288:87060325
chr2	87060341	.	G	A	54.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DP=9;ExcessHet=3.0103;FS=6.532;MQ=58.04;MQRankSum=-1.221e+00;NEGATIVE_TRAIN_SITE;QD=6.04;ReadPosRankSum=0.812;SOR=0.016;VQSLOD=-1.688e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:87060325_T_TCC:63,0,288:87060325
chr2	87060343	.	A	G	51.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DP=9;ExcessHet=3.0103;FS=6.532;MQ=58.04;MQRankSum=-1.221e+00;NEGATIVE_TRAIN_SITE;QD=5.71;ReadPosRankSum=0.812;SOR=0.016;VQSLOD=-1.700e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:60:0|1:87060325_T_TCC:60,0,330:87060325
chr2	87060348	.	C	A	51.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DP=10;ExcessHet=3.0103;FS=6.990;MQ=58.24;MQRankSum=-1.282e+00;NEGATIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=0.967;SOR=0.012;VQSLOD=-1.780e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:87060325_T_TCC:60,0,330:87060325
chr2	87060354	.	G	T	51.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DP=9;ExcessHet=3.0103;FS=6.532;MQ=58.04;MQRankSum=-1.221e+00;NEGATIVE_TRAIN_SITE;QD=5.70;ReadPosRankSum=0.282;SOR=0.016;VQSLOD=-1.670e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:60:0|1:87060325_T_TCC:60,0,330:87060325
chr2	87060356	.	T	G	54.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DP=9;ExcessHet=3.0103;FS=6.532;MQ=58.04;MQRankSum=-1.221e+00;NEGATIVE_TRAIN_SITE;QD=6.03;ReadPosRankSum=0.00;SOR=0.016;VQSLOD=-1.658e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:87060325_T_TCC:63,0,288:87060325
chr2	87060359	rs62146088	C	A	228.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=58.65;MQRankSum=0.674;QD=17.55;ReadPosRankSum=1.10;SOR=0.859;VQSLOD=-4.967e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:133,0,114
chr2	87069379	rs4322832	G	A	2641.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=35;ExcessHet=3.0103;FS=1.018;MQ=40.63;MQRankSum=0.307;QD=26.96;ReadPosRankSum=0.586;SOR=0.515;VQSLOD=-5.239e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1153,104,0
chr2	87069431	rs4514875	C	T	3284.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.169;DB;DP=37;ExcessHet=3.0103;FS=1.838;MQ=39.16;MQRankSum=-6.960e-01;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=-9.130e-01;SOR=0.569;VQSLOD=-3.932e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1247,111,0
chr2	87073743	rs4971887	A	G	3735.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=39;ExcessHet=3.0103;FS=3.207;MQ=46.14;MQRankSum=-6.615e+00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-2.910e+00;SOR=1.130;VQSLOD=-2.258e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1293,117,0
chr2	87085641	rs13390206	G	A	620.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.603;DB;DP=8;ExcessHet=3.9794;FS=7.765;MQ=53.80;MQRankSum=-4.502e+00;NEGATIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=0.981;SOR=2.627;VQSLOD=-3.668e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:297,24,0
chr2	87092865	rs10195435	C	T	200.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=56.41;MQRankSum=-2.638e+00;NEGATIVE_TRAIN_SITE;QD=6.92;ReadPosRankSum=0.536;SOR=0.892;VQSLOD=-3.197e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	87100186	rs7562997	A	G	307.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=54.56;MQRankSum=0.035;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=1.30;SOR=1.179;VQSLOD=-5.103e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:316,0,149
chr2	87100519	rs150217372	A	T	77.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=42.11;MQRankSum=-1.016e+00;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-2.410e-01;SOR=0.283;VQSLOD=-3.216e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:86:86,0,220
chr2	87100752	rs192892473	C	T	79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=38.33;QD=27.61;SOR=2.303;VQSLOD=-5.120e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:87100752_C_T:90,6,0:87100752
chr2	87105775	rs138608684	C	T	171.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=48.21;MQRankSum=0.623;QD=7.14;ReadPosRankSum=-2.330e+00;SOR=0.495;VQSLOD=-4.434e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:180,0,503
chr2	87105886	rs149291892	T	G	505.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=32;ExcessHet=3.0103;FS=1.523;MQ=55.23;MQRankSum=-3.660e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=-5.840e-01;SOR=0.311;VQSLOD=-1.410e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:514,0,486
chr2	87106108	rs58443432	T	C	474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=43.18;MQRankSum=0.944;QD=9.68;ReadPosRankSum=0.493;SOR=0.760;VQSLOD=-4.807e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,19:49:99:483,0,817
chr2	87106225	rs59215213	T	C	96.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:105,0,69
chr2	87106911	rs67304608	C	A	263.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.73;MQRankSum=1.15;QD=23.99;ReadPosRankSum=1.15;SOR=0.693;VQSLOD=-4.134e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:34:78,0,34
chr2	87113435	rs377305303	G	C	70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=40.00;QD=22.42;SOR=2.303;VQSLOD=-4.529e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	87113884	rs145515662	C	T	47.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=41.33;MQRankSum=-1.383e+00;QD=11.84;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=-4.735e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:56:56,0,78
chr2	87114864	rs4605372	T	G	787.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.25;DB;DP=37;ExcessHet=3.0103;FS=19.991;MQ=58.21;MQRankSum=0.284;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=-1.990e-01;SOR=4.804;VQSLOD=-2.934e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,21:37:99:796,0,383
chr2	87115258	.	C	CT	45.55	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=50.48;QD=15.18;SOR=2.833;VQSLOD=0.947;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:60,9,0
chr2	87122105	rs377096817	CT	C	93.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-02;DB;DP=8;ExcessHet=6.9897;FS=4.075;MQ=60.00;MQRankSum=0.00;QD=3.61;ReadPosRankSum=0.536;SOR=1.574;VQSLOD=4.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,2:8:28:28,0,125
chr2	87169471	.	C	G	2701	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DP=53;ExcessHet=3.0103;FS=4.537;MQ=51.63;MQRankSum=1.77;NEGATIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=1.83;SOR=0.331;VQSLOD=-2.081e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,52:53:99:1|1:87169471_C_G:1992,101,0:87169471
chr2	87169493	.	C	G	2312.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DP=38;ExcessHet=3.0103;FS=1.284;MQ=53.38;MQRankSum=1.80;NEGATIVE_TRAIN_SITE;QD=33.04;ReadPosRankSum=1.55;SOR=0.476;VQSLOD=-2.974e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,37:38:62:1|1:87169471_C_G:1656,62,0:87169471
chr2	87169515	.	C	G	273.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DP=24;ExcessHet=3.0103;FS=0.000;MQ=52.61;MQRankSum=-2.683e+00;NEGATIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-2.698e+00;SOR=0.693;VQSLOD=-3.737e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,10:24:99:0|1:87169471_C_G:281,0,500:87169471
chr2	87302879	rs62144416	A	G	211.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=43.17;MQRankSum=-6.370e-01;QD=17.62;ReadPosRankSum=0.816;SOR=0.693;VQSLOD=-4.216e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	87303060	rs79162177	C	G	4587.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.344;DB;DP=63;ExcessHet=3.9794;FS=1.066;MQ=59.56;MQRankSum=0.053;QD=18.88;ReadPosRankSum=0.313;SOR=0.809;VQSLOD=-4.124e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2160,189,0
chr2	87345696	rs62144432	A	C	1189.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.280e-01;DB;DP=20;ExcessHet=3.9794;FS=1.093;MQ=53.02;MQRankSum=2.37;NEGATIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=-9.090e-01;SOR=0.976;VQSLOD=-3.305e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:517,59,0
chr2	87348265	rs199501889	T	C	474.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=44.68;MQRankSum=1.15;QD=33.92;ReadPosRankSum=-8.870e-01;SOR=1.061;VQSLOD=-4.790e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	87355707	rs200544053	G	A	111.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=40.98;MQRankSum=-8.420e-01;QD=7.41;ReadPosRankSum=2.20;SOR=0.160;VQSLOD=-4.555e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,159
chr2	87355912	rs201336213	C	T	402.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DB;DP=57;ExcessHet=6.9897;FS=5.738;MQ=54.65;MQRankSum=-4.510e+00;NEGATIVE_TRAIN_SITE;QD=1.83;ReadPosRankSum=-5.900e-01;SOR=1.031;VQSLOD=-3.008e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,8:57:99:117,0,1260
chr2	87356024	rs3101261	C	A	878.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DB;DP=36;ExcessHet=6.9897;FS=0.822;MQ=51.97;MQRankSum=-2.897e+00;NEGATIVE_TRAIN_SITE;QD=6.42;ReadPosRankSum=0.476;SOR=0.573;VQSLOD=-3.679e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,8:36:99:0|1:87356024_C_A:229,0,1178:87356024
chr2	87356038	rs201869954	G	A	756.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-01;DB;DP=28;ExcessHet=6.9897;FS=0.996;MQ=51.51;MQRankSum=-2.661e+00;NEGATIVE_TRAIN_SITE;QD=7.21;ReadPosRankSum=0.641;SOR=0.506;VQSLOD=-3.561e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,6:28:99:0|1:87356024_C_A:186,0,1001:87356024
chr2	87356057	rs80344669	A	G	2050.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=19;ExcessHet=3.9794;FS=1.435;MQ=49.46;MQRankSum=-2.853e+00;NEGATIVE_TRAIN_SITE;QD=28.89;ReadPosRankSum=1.13;SOR=0.438;VQSLOD=-2.967e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:99:449,0,109
chr2	87356099	rs200099198	G	T	165.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=10;ExcessHet=3.9794;FS=5.699;MQ=48.95;MQRankSum=-1.732e+00;QD=6.37;ReadPosRankSum=-1.396e+00;SOR=0.030;VQSLOD=-1.957e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:88:88,0,234
chr2	87365406	rs114479675	T	A	72.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=40.00;QD=29.23;SOR=2.303;VQSLOD=-4.623e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	87371260	rs199958413	T	C	1899.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.067e+00;DB;DP=25;ExcessHet=3.9794;FS=0.744;MQ=54.47;MQRankSum=1.05;NEGATIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=1.76;SOR=0.854;VQSLOD=-2.872e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:791,75,0
chr2	87371339	rs148290079	C	T	656.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.31;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=39.58;MQRankSum=-4.960e-01;QD=18.25;ReadPosRankSum=0.700;SOR=0.246;VQSLOD=-4.813e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:334,27,0
chr2	87376944	rs6547711	G	A	3594.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.38;DB;DP=39;ExcessHet=3.0103;FS=1.986;MQ=55.96;MQRankSum=0.137;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=-6.880e-01;SOR=1.004;VQSLOD=-6.264e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1292,117,0
chr2	87404271	rs201422789	T	G	96.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.91;DB;DP=3;ExcessHet=1.5490;FS=1.951;MQ=44.93;MQRankSum=-2.440e+00;QD=3.57;ReadPosRankSum=1.31;SOR=0.250;VQSLOD=-3.948e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
chr2	87408508	rs200298411	C	A	304.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=9;ExcessHet=3.9794;FS=1.072;MQ=52.47;MQRankSum=-3.362e+00;NEGATIVE_TRAIN_SITE;QD=3.96;ReadPosRankSum=0.253;SOR=0.505;VQSLOD=-3.940e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:266,27,0
chr2	87415772	rs78780176	C	G	165.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=38.04;MQRankSum=-1.383e+00;QD=20.73;ReadPosRankSum=1.38;SOR=1.863;VQSLOD=-4.807e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:127,12,0
chr2	87565743	rs372140923	A	C	1527.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=55;ExcessHet=6.9897;FS=10.247;MQ=53.87;MQRankSum=-6.385e+00;QD=7.76;ReadPosRankSum=-1.203e+00;SOR=1.066;VQSLOD=-3.657e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,19:55:99:447,0,1119
chr2	87929026	rs72624665	G	T	371.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.223e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=48.88;MQRankSum=-2.166e+00;QD=8.27;ReadPosRankSum=0.778;SOR=0.236;VQSLOD=-3.260e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:72:72,0,292
chr2	88013674	rs201671796	A	G	196.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=44.09;MQRankSum=-2.187e+00;QD=4.18;ReadPosRankSum=-1.131e+00;SOR=0.743;VQSLOD=-4.584e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,11:47:99:205,0,1000
chr2	88272798	rs201020598	C	T	5729.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=214;ExcessHet=6.9897;FS=3.236;MQ=48.52;MQRankSum=-4.870e-01;QD=12.35;ReadPosRankSum=-7.420e-01;SOR=0.943;VQSLOD=-3.038e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,120:214:99:3017,0,2075
chr2	88272919	.	C	A	2960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.255e+00;DP=205;ExcessHet=3.9794;FS=10.855;MQ=46.03;MQRankSum=0.019;QD=9.61;ReadPosRankSum=0.710;SOR=0.480;VQSLOD=-3.265e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,63:205:99:1174,0,3769
chr2	88272998	rs144217333	C	A	67.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.70;DB;DP=97;ExcessHet=3.0103;FS=3.061;MQ=46.44;MQRankSum=-5.292e+00;QD=0.70;ReadPosRankSum=-1.229e+00;SOR=1.304;VQSLOD=-4.343e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,11:97:75:75,0,2263
chr2	88289368	rs10209326	G	A	1450.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=58.92;POSITIVE_TRAIN_SITE;QD=29.01;SOR=1.051;VQSLOD=3.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:503,51,0
chr2	88328183	.	T	TC	519.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.14;MQRankSum=1.19;QD=11.80;ReadPosRankSum=2.07;SOR=0.540;VQSLOD=0.112;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,4:21:99:131,0,419
chr2	88328207	.	C	CG	245.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782e+00;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.35;ReadPosRankSum=-5.400e-02;SOR=0.818;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:254,0,270
chr2	88328208	rs12328217	G	A	1162.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.478e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.54;MQRankSum=0.00;QD=20.05;ReadPosRankSum=0.700;SOR=1.009;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:231,0,315
chr2	88367812	rs13391347	G	T	358.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.830e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=1.43;SOR=1.061;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	88387365	rs78009515	G	A	1594.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.971;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.803;SOR=0.743;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,29:58:99:759,0,712
chr2	88387557	rs1542087	A	C	4344.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=194;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-3.070e-01;SOR=0.721;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,74:194:99:1640,0,3062
chr2	88390700	.	TG	T	1809.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.250e-01;DP=106;ExcessHet=3.0103;FS=5.003;MQ=60.00;MQRankSum=0.00;QD=17.07;ReadPosRankSum=-7.630e-01;SOR=0.364;VQSLOD=5.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,62:106:99:1818,0,1158
chr2	88395803	rs2970910	A	G	272.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.53;SOR=0.804;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:16:223,0,16
chr2	88395824	rs2970911	G	A	259.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.61;SOR=0.693;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:50:172,0,50
chr2	88395989	rs2197077	G	C	1711.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-02;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.138;SOR=0.648;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,19:51:99:467,0,868
chr2	88396080	rs2919883	A	C	2209.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=69;ExcessHet=3.9794;FS=3.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.657;SOR=0.983;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,29:69:99:822,0,985
chr2	88396120	rs2919882	G	A	2953.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305e+00;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=0.331;SOR=0.733;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,31:71:99:0|1:88396120_G_A:1192,0,1870:88396120
chr2	88396123	rs2970912	C	G	2953.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.156;SOR=0.680;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,32:72:99:0|1:88396120_G_A:1192,0,1870:88396120
chr2	88396174	rs2919881	T	C	1857.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DB;DP=72;ExcessHet=3.9794;FS=0.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.575;SOR=0.613;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,31:72:99:740,0,1032
chr2	88396348	rs62156964	G	A	557.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=14;ExcessHet=3.9794;FS=6.235;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.714;SOR=2.720;VQSLOD=18.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,8:14:99:0|1:88396348_G_A:313,0,477:88396348
chr2	88396358	rs62156965	C	T	526.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-02;DB;DP=13;ExcessHet=3.9794;FS=3.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.904;SOR=2.303;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,7:13:99:0|1:88396348_G_A:276,0,480:88396348
chr2	88402511	rs1866946	C	A	1315.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=0.373;SOR=0.929;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:499,0,157
chr2	88402560	rs894197	G	A	1704.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157e+00;DB;DP=44;ExcessHet=3.9794;FS=0.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=0.195;SOR=0.547;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,28:44:99:711,0,424
chr2	88402748	rs748226	G	A	903.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.980e-01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.496;SOR=0.658;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,14:35:99:365,0,589
chr2	88406108	rs2919862	C	T	3007.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.490e-01;DB;DP=103;ExcessHet=3.9794;FS=6.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.930e-01;SOR=0.409;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,58:103:99:1514,0,1291
chr2	88406257	rs2970920	A	G	1130.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.197;DB;DP=20;ExcessHet=1.5490;FS=9.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.27;ReadPosRankSum=-4.560e-01;SOR=3.549;VQSLOD=13.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:790,60,0
chr2	88407959	rs2970918	T	C	5772.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.694;DB;DP=139;ExcessHet=1.5490;FS=0.503;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=-1.738e+00;SOR=0.652;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4333,417,0
chr2	88408025	rs113707075	C	T	1717.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.00;SOR=0.683;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,68:132:99:1726,0,1505
chr2	88408172	rs2919858	A	G	3268.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.47;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=-3.630e-01;SOR=0.765;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1574,129,0
chr2	88409719	rs139694354	A	AGAGT	2885.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=32;ExcessHet=3.0103;FS=4.836;MQ=59.62;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=0.027;SOR=1.383;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,31:32:92:952,92,0
chr2	88410102	rs2289497	C	G	6232.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.96;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.13;ReadPosRankSum=-3.500e-02;SOR=0.884;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2487,213,0
chr2	88410168	rs2289498	A	G	2158.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.000e-02;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.27;ReadPosRankSum=-2.810e-01;SOR=3.947;VQSLOD=19.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:863,66,0
chr2	88411605	rs2919865	A	T	1558.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.295;DB;DP=34;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=-1.090e-01;SOR=0.586;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1016,102,0
chr2	88411793	rs2970888	C	A	1561.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.539e+00;DB;DP=14;ExcessHet=3.0103;FS=1.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=1.86;SOR=0.368;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:466,42,0
chr2	88411904	rs2970889	C	T	69.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.87;SOR=0.693;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	88422412	rs2919867	G	A	203.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:57:181,0,57
chr2	88422758	rs2197076	G	A	588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.61;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.079;SOR=0.818;VQSLOD=4.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:167,0,236
chr2	88423816	rs1545224	A	G	354.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=1.5490;FS=7.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=1.07;SOR=4.804;VQSLOD=13.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:29:153,0,29
chr2	88424066	rs2241883	T	C	1510.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DB;DP=129;ExcessHet=3.0103;FS=0.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.679;SOR=0.793;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,63:129:99:1519,0,1593
chr2	88472791	rs4129190	G	A	3746.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.06;SOR=1.274;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1125,108,0
chr2	88472925	rs4129189	A	G	1802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370e-01;DB;DP=47;ExcessHet=6.9897;FS=2.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=0.477;SOR=0.926;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,28:47:99:719,0,446
chr2	88473144	rs56707128	T	TA	82.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.30;ReadPosRankSum=-1.036e+00;SOR=1.179;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:8:59,8,0
chr2	88474370	rs2139100	A	G	9353.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=1.445;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2938,264,0
chr2	88484808	rs2292869	C	A	1753.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233e+00;DB;DP=93;ExcessHet=3.9794;FS=0.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-2.060e-01;SOR=0.622;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,53:93:99:1221,0,1040
chr2	88485392	rs1878810	G	C	14056.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=0.942;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3851,339,0
chr2	88748097	.	C	CAGT	2083.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.160e-01;DP=112;ExcessHet=3.0103;FS=2.398;MQ=60.00;MQRankSum=0.00;QD=18.60;ReadPosRankSum=0.769;SOR=0.931;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,54:112:99:2092,0,2740
chr2	88748390	rs4972212	A	T	2589.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.760e-01;DB;DP=87;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-2.940e-01;SOR=0.747;VQSLOD=6.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,52:87:99:1387,0,843
chr2	88751751	rs11456039	A	AG	2862.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.10;SOR=3.669;VQSLOD=5.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:634,51,0
chr2	88825965	rs35750657	G	A	607.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DB;DP=48;ExcessHet=3.0103;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-2.070e-01;SOR=0.518;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:616,0,535
chr2	88858642	rs1805185	CAT	C	108.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-1.890e-01;SOR=0.693;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,119
chr2	88861757	rs1800980	T	G	758.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=64;ExcessHet=3.0103;FS=1.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.244;SOR=0.527;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,28:64:99:767,0,915
chr2	88870632	rs4972221	A	T	1903.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.040e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.21;ReadPosRankSum=-1.280e-01;SOR=0.566;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:369,30,0
chr2	88874891	rs1805165	C	A	7708.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=83;ExcessHet=3.0103;FS=0.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-9.000e-03;SOR=0.772;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2650,249,0
chr2	88879131	rs1805164	T	C	6687.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.950e-01;DB;DP=109;ExcessHet=1.5490;FS=1.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=-8.800e-02;SOR=0.819;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,53:109:99:1334,0,1537
chr2	88895123	rs13045	T	C	5294.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.847;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=-1.196e+00;SOR=0.738;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2003,206,0
chr2	88895351	rs7571971	T	C	3311.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.194e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=0.852;SOR=0.616;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1389,135,0
chr2	88926729	rs144052332	CCAG	C	2896.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.300e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.51;ReadPosRankSum=-3.020e-01;SOR=0.735;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,21:21:64:939,64,0
chr2	88997878	rs908277	C	T	1332.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=14;ExcessHet=1.5490;FS=2.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.32;ReadPosRankSum=0.00;SOR=2.022;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:307,0,161
chr2	88998266	rs17037571	T	C	152.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=-3.450e-01;SOR=0.892;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:161,0,137
chr2	88999476	rs1158603	G	A	5338.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.798e+00;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=-9.350e-01;SOR=0.374;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,75:76:99:2341,182,0
chr2	89028547	rs7603862	C	T	99.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=1.04;SOR=2.833;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:108,0,61
chr2	89029066	rs56084203	C	T	643.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=40;ExcessHet=3.0103;FS=1.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.789;SOR=0.446;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:652,0,508
chr2	89033872	rs2306676	C	T	656.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.91;ReadPosRankSum=-6.740e-01;SOR=4.294;VQSLOD=13.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:25:196,0,25
chr2	89034338	rs10199331	T	C	617.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=38;ExcessHet=3.0103;FS=1.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.132;SOR=0.997;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:626,0,410
chr2	89082520	rs72930612	G	A	5809.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DB;DP=78;ExcessHet=6.9897;FS=10.917;MQ=53.33;MQRankSum=-7.066e+00;QD=20.75;ReadPosRankSum=-1.861e+00;SOR=0.349;VQSLOD=-2.915e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,49:78:99:1548,0,905
chr2	89082536	rs201698437	T	G	4073.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=62;ExcessHet=6.9897;FS=5.993;MQ=53.65;MQRankSum=-6.726e+00;QD=18.03;ReadPosRankSum=-4.330e-01;SOR=0.412;VQSLOD=-2.500e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,40:62:99:1301,0,871
chr2	89082549	.	G	C	4245.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DP=48;ExcessHet=6.9897;FS=2.846;MQ=53.62;MQRankSum=-5.590e+00;QD=22.83;ReadPosRankSum=-1.443e+00;SOR=0.493;VQSLOD=-3.293e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,32:48:99:0|1:89082549_G_C:1329,0,727:89082549
chr2	89082552	.	C	T	4122.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.114e+00;DP=46;ExcessHet=6.9897;FS=6.082;MQ=53.75;MQRankSum=-5.365e+00;QD=23.16;ReadPosRankSum=-1.247e+00;SOR=0.376;VQSLOD=-1.870e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,31:46:99:0|1:89082549_G_C:1254,0,579:89082549
chr2	89082554	.	C	T	3896.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DP=46;ExcessHet=6.9897;FS=8.993;MQ=54.21;MQRankSum=-5.203e+00;QD=22.40;ReadPosRankSum=-8.250e-01;SOR=0.298;VQSLOD=-2.019e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,30:46:99:0|1:89082549_G_C:1254,0,579:89082549
chr2	89082565	rs72490036	C	G	2842.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.389e+00;DB;DP=43;ExcessHet=6.9897;FS=5.618;MQ=54.58;MQRankSum=-4.493e+00;NEGATIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=-9.470e-01;SOR=0.358;VQSLOD=-1.860e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,29:43:99:827,0,501
chr2	89082616	rs149368521	G	A	2797.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=33;ExcessHet=6.9897;FS=0.900;MQ=55.23;MQRankSum=-2.985e+00;NEGATIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=0.263;SOR=0.881;VQSLOD=-2.841e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,19:33:99:0|1:89082616_G_A:756,0,531:89082616
chr2	89082618	rs143108186	T	G	2797.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=32;ExcessHet=6.9897;FS=0.900;MQ=55.32;MQRankSum=-2.985e+00;NEGATIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=0.361;SOR=0.881;VQSLOD=-2.850e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,18:32:99:0|1:89082616_G_A:756,0,531:89082616
chr2	89082684	rs80130259	G	T	1637.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=17;ExcessHet=6.9897;FS=1.585;MQ=53.48;MQRankSum=-2.238e+00;NEGATIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.282;SOR=1.142;VQSLOD=-2.439e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:326,0,189
chr2	89082695	rs202235353	C	A	290.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677e+00;DB;DP=15;ExcessHet=3.9794;FS=6.351;MQ=51.98;MQRankSum=1.97;NEGATIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=1.30;SOR=0.078;VQSLOD=-1.348e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:75:75,0,452
chr2	89082702	rs75619364	C	A	1191.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.644e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=52.39;MQRankSum=-2.352e+00;NEGATIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=0.996;SOR=1.136;VQSLOD=-2.555e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:278,0,266
chr2	89084327	rs335121	G	C	3608.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.34;DB;DP=41;ExcessHet=3.0103;FS=0.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=0.170;SOR=0.878;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1460,123,0
chr2	89085935	rs1843220	C	T	200.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874e+00;DB;DP=19;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-2.860e-01;SOR=0.243;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:209,0,300
chr2	89092696	rs184585	G	A	532.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.126;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=50.66;MQRankSum=-1.645e+00;NEGATIVE_TRAIN_SITE;QD=31.32;ReadPosRankSum=1.65;SOR=2.712;VQSLOD=-2.150e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:366,27,0
chr2	89100580	rs1825474	T	C	627.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=57.83;MQRankSum=1.04;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.352;SOR=0.551;VQSLOD=0.654;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:636,0,727
chr2	89100725	rs75572943	G	A	813.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;DB;DP=87;ExcessHet=6.9897;FS=15.697;MQ=58.12;MQRankSum=-6.419e+00;QD=2.93;ReadPosRankSum=-8.410e-01;SOR=1.050;VQSLOD=-4.617e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,14:87:99:0|1:89100697_C_G:339,0,2932:89100697
chr2	89100759	rs73956140	A	C	1618.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.930e-01;DB;DP=68;ExcessHet=6.9897;FS=1.303;MQ=57.16;MQRankSum=-6.266e+00;QD=7.16;ReadPosRankSum=-9.870e-01;SOR=0.556;VQSLOD=-3.850e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,18:68:99:0|1:89100759_A_C:574,0,2025:89100759
chr2	89100764	rs74666751	A	G	1626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DB;DP=66;ExcessHet=6.9897;FS=0.000;MQ=57.13;MQRankSum=-6.155e+00;QD=7.67;ReadPosRankSum=-6.020e-01;SOR=0.668;VQSLOD=-3.905e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,18:66:99:0|1:89100759_A_C:580,0,1961:89100759
chr2	89100805	rs112251260	A	G	1482.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=44;ExcessHet=6.9897;FS=8.290;MQ=56.15;MQRankSum=-5.051e+00;QD=10.09;ReadPosRankSum=3.77;SOR=1.685;VQSLOD=-4.105e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,14:44:99:0|1:89100805_A_G:498,0,1218:89100805
chr2	89100808	rs112658022	C	A	1485.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.619e+00;DB;DP=44;ExcessHet=6.9897;FS=6.687;MQ=56.04;MQRankSum=-4.913e+00;NEGATIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=3.74;SOR=1.570;VQSLOD=-3.866e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,14:44:99:0|1:89100805_A_G:498,0,1218:89100805
chr2	89100816	rs200993950	A	G	1515.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=41;ExcessHet=6.9897;FS=5.237;MQ=55.70;MQRankSum=-4.697e+00;NEGATIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=3.41;SOR=1.364;VQSLOD=-3.494e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,14:41:99:0|1:89100805_A_G:507,0,1092:89100805
chr2	89100865	rs75849821	T	C	960.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=23;ExcessHet=6.9897;FS=2.954;MQ=53.18;MQRankSum=-3.936e+00;NEGATIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-1.634e+00;SOR=1.828;VQSLOD=-2.311e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:372,0,408
chr2	89103705	rs79526542	A	G	558.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=10;ExcessHet=4.7712;FS=3.859;MQ=47.62;MQRankSum=-1.169e+00;QD=25.37;ReadPosRankSum=0.435;SOR=2.531;VQSLOD=-2.904e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:169,0,99
chr2	89103755	rs76346641	C	A	2728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.450e-01;DB;DP=28;ExcessHet=6.9897;FS=3.459;MQ=50.20;MQRankSum=-3.549e+00;NEGATIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=0.209;SOR=0.370;VQSLOD=-2.310e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,20:28:99:0|1:89103755_C_A:858,0,271:89103755
chr2	89103761	rs78992479	C	G	3066.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DB;DP=30;ExcessHet=6.9897;FS=4.796;MQ=50.31;MQRankSum=-3.772e+00;NEGATIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=0.136;SOR=0.321;VQSLOD=-1.876e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,21:30:99:0|1:89103755_C_A:914,0,307:89103755
chr2	89103765	rs76273663	A	C	3154.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.472;DB;DP=32;ExcessHet=6.9897;FS=6.097;MQ=50.20;MQRankSum=-3.696e+00;NEGATIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=0.117;SOR=0.296;VQSLOD=-1.826e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,23:32:99:0|1:89103755_C_A:914,0,307:89103755
chr2	89103862	rs78708418	T	C	2686.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=54;ExcessHet=6.9897;FS=20.646;MQ=51.66;MQRankSum=-5.749e+00;QD=15.90;ReadPosRankSum=0.810;SOR=1.005;VQSLOD=-5.131e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,32:54:99:796,0,606
chr2	89103894	rs78447802	C	T	2261.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.590e-01;DB;DP=47;ExcessHet=6.9897;FS=18.758;MQ=52.80;MQRankSum=-5.735e+00;QD=15.28;ReadPosRankSum=-1.484e+00;SOR=1.436;VQSLOD=-4.697e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:598,0,761
chr2	89103904	rs1047685	C	T	3856.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=45;ExcessHet=3.0103;FS=6.666;MQ=53.18;MQRankSum=-6.030e+00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=-1.916e+00;SOR=1.044;VQSLOD=-2.841e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1547,134,0
chr2	89104073	rs2848121	G	A	1705.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=57.05;POSITIVE_TRAIN_SITE;QD=30.55;SOR=0.843;VQSLOD=3.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:491,36,0
chr2	89104086	rs112394335	T	C	103.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DB;DP=11;ExcessHet=6.9897;FS=13.031;MQ=57.10;MQRankSum=-3.015e+00;NEGATIVE_TRAIN_SITE;QD=4.15;ReadPosRankSum=1.34;SOR=3.605;VQSLOD=-4.783e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:57:0|1:89104086_T_C:57,0,365:89104086
chr2	89104095	rs111985340	G	A	99.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348e+00;DB;DP=10;ExcessHet=3.9794;FS=8.179;MQ=57.10;MQRankSum=-3.295e+00;NEGATIVE_TRAIN_SITE;QD=4.33;ReadPosRankSum=1.22;SOR=2.694;VQSLOD=-3.495e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:89104086_T_C:60,0,330:89104086
chr2	89104158	rs113509784	T	G	289.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=23;ExcessHet=3.9794;FS=2.451;MQ=55.03;MQRankSum=-4.297e+00;NEGATIVE_TRAIN_SITE;QD=5.90;ReadPosRankSum=1.31;SOR=1.204;VQSLOD=-3.845e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,5:23:99:0|1:89104158_T_G:156,0,741:89104158
chr2	89104182	rs74630323	A	G	385.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.17;DB;DP=26;ExcessHet=3.9794;FS=9.956;MQ=54.85;MQRankSum=-4.638e+00;NEGATIVE_TRAIN_SITE;QD=6.31;ReadPosRankSum=-3.000e-02;SOR=2.809;VQSLOD=-4.173e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,6:26:99:0|1:89104158_T_G:192,0,822:89104158
chr2	89104192	rs189985886	T	C	178.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=30;ExcessHet=3.9794;FS=4.797;MQ=55.02;MQRankSum=-3.451e+00;NEGATIVE_TRAIN_SITE;QD=2.62;ReadPosRankSum=-2.400e-02;SOR=1.828;VQSLOD=-2.853e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,3:30:81:0|1:89104161_G_GA:81,0,1206:89104161
chr2	89104196	rs78286006	T	C	75.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=32;ExcessHet=3.9794;FS=4.785;MQ=54.73;MQRankSum=-3.220e+00;NEGATIVE_TRAIN_SITE;QD=1.05;ReadPosRankSum=0.065;SOR=1.845;VQSLOD=-2.943e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,3:32:30:0|1:89104144_TCGA_T:30,0,1330:89104144
chr2	89104197	.	G	A	108.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DP=33;ExcessHet=3.9794;FS=4.742;MQ=54.46;MQRankSum=-3.044e+00;NEGATIVE_TRAIN_SITE;QD=1.44;ReadPosRankSum=-9.400e-02;SOR=1.751;VQSLOD=-2.794e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,3:33:68:0|1:89104144_TCGA_T:68,0,1285:89104144
chr2	89104198	.	A	T	332.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DP=34;ExcessHet=3.9794;FS=9.662;MQ=54.53;MQRankSum=-4.256e+00;NEGATIVE_TRAIN_SITE;QD=4.37;ReadPosRankSum=-1.216e+00;SOR=2.749;VQSLOD=-4.297e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,5:34:99:0|1:89104161_G_GA:120,0,1240:89104161
chr2	89104334	rs77716262	T	G	9740.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293e+00;DB;DP=138;ExcessHet=6.9897;FS=7.788;MQ=54.30;MQRankSum=-5.730e+00;QD=21.18;ReadPosRankSum=2.69;SOR=0.655;VQSLOD=-2.892e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,85:138:99:2347,0,1210
chr2	89104347	rs76066210	G	T	3397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.090e-01;DB;DP=138;ExcessHet=6.9897;FS=0.552;MQ=54.17;MQRankSum=0.441;NEGATIVE_TRAIN_SITE;QD=7.20;ReadPosRankSum=0.214;SOR=0.624;VQSLOD=-3.200e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,44:138:99:874,0,2774
chr2	89104364	rs62158695	A	G	10457.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.160e-01;DB;DP=126;ExcessHet=6.9897;FS=5.930;MQ=54.24;MQRankSum=-4.975e+00;NEGATIVE_TRAIN_SITE;QD=23.82;ReadPosRankSum=1.05;SOR=0.394;VQSLOD=-1.957e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,88:126:99:2771,0,820
chr2	89104430	rs77991597	G	C	1962.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222e+00;DB;DP=67;ExcessHet=6.9897;FS=0.633;MQ=52.21;MQRankSum=1.37;NEGATIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=0.680;SOR=0.795;VQSLOD=-3.305e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,23:67:99:549,0,1339
chr2	89104453	rs113086830	T	C	2752.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.425e+00;DB;DP=41;ExcessHet=6.9897;FS=0.948;MQ=49.09;MQRankSum=0.013;QD=18.86;ReadPosRankSum=-6.130e-01;SOR=0.574;VQSLOD=-3.319e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:604,0,736
chr2	89104463	rs111790542	A	G	585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056e+00;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=47.46;MQRankSum=-1.595e+00;QD=4.80;ReadPosRankSum=0.137;SOR=0.689;VQSLOD=-3.850e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,5:36:57:57,0,1194
chr2	89104697	rs6737140	T	A	1059.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=16;ExcessHet=1.5490;FS=4.981;MQ=59.28;MQRankSum=1.42;NEGATIVE_TRAIN_SITE;QD=30.28;ReadPosRankSum=-1.520e+00;SOR=3.193;VQSLOD=-1.698e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:329,0,152
chr2	89104751	rs78109032	A	G	72.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=27;ExcessHet=3.9794;FS=7.502;MQ=55.33;MQRankSum=-3.240e-01;NEGATIVE_TRAIN_SITE;QD=1.13;ReadPosRankSum=-6.560e-01;SOR=2.441;VQSLOD=-2.888e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,3:27:35:35,0,774
chr2	89104779	rs200973469	T	A	94.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DB;DP=38;ExcessHet=3.9794;FS=12.708;MQ=56.38;MQRankSum=1.02;NEGATIVE_TRAIN_SITE;QD=1.12;ReadPosRankSum=0.677;SOR=3.166;VQSLOD=-3.705e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,3:38:18:0|1:89104779_T_A:18,0,1753:89104779
chr2	89104783	.	A	T	91.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=39;ExcessHet=3.9794;FS=10.039;MQ=56.47;MQRankSum=1.00;NEGATIVE_TRAIN_SITE;QD=1.06;ReadPosRankSum=0.896;SOR=3.092;VQSLOD=-3.267e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,3:39:18:0|1:89104779_T_A:18,0,1753:89104779
chr2	89104804	rs2365124	A	G	441.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.560e-01;DB;DP=51;ExcessHet=6.9897;FS=1.920;MQ=57.45;MQRankSum=1.02;NEGATIVE_TRAIN_SITE;QD=2.41;ReadPosRankSum=-4.980e-01;SOR=0.467;VQSLOD=-2.408e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,6:51:99:106,0,1387
chr2	89104811	.	T	A	474.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.428e+00;DP=51;ExcessHet=6.9897;FS=0.000;MQ=57.57;MQRankSum=1.07;NEGATIVE_TRAIN_SITE;QD=2.47;ReadPosRankSum=-5.260e-01;SOR=0.612;VQSLOD=-1.996e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,6:51:99:106,0,2101
chr2	89104824	rs146582325	A	G	400.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.840e-01;DB;DP=61;ExcessHet=6.9897;FS=0.000;MQ=57.45;MQRankSum=0.131;NEGATIVE_TRAIN_SITE;QD=1.91;ReadPosRankSum=-1.380e-01;SOR=0.760;VQSLOD=-2.119e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:54,7:61:55:55,0,1633
chr2	89104865	rs75680021	A	T	391	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;DB;DP=76;ExcessHet=6.9897;FS=9.564;MQ=56.89;MQRankSum=-2.578e+00;NEGATIVE_TRAIN_SITE;QD=1.39;ReadPosRankSum=0.807;SOR=1.425;VQSLOD=-2.789e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:63,13:76:99:186,0,2462
chr2	89104882	rs4020366	C	A	1505.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018e+00;DB;DP=77;ExcessHet=6.9897;FS=18.275;MQ=57.85;MQRankSum=-5.675e+00;QD=5.02;ReadPosRankSum=-1.042e+00;SOR=1.736;VQSLOD=-4.786e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:62,15:77:99:466,0,2006
chr2	89105008	rs2365127	T	C	5415.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e+00;DB;DP=81;ExcessHet=6.9897;FS=16.920;MQ=53.89;MQRankSum=-8.408e+00;QD=15.98;ReadPosRankSum=0.448;SOR=0.300;VQSLOD=-4.623e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,39:81:99:1600,0,1208
chr2	89105019	rs2365128	A	C	5312.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683e+00;DB;DP=78;ExcessHet=6.9897;FS=20.575;MQ=53.74;MQRankSum=-8.327e+00;QD=16.25;ReadPosRankSum=-1.650e-01;SOR=0.261;VQSLOD=-5.212e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,40:78:99:1465,0,1042
chr2	89105076	rs77496827	A	T	1970.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=40;ExcessHet=6.9897;FS=0.918;MQ=53.05;MQRankSum=-5.209e+00;QD=12.88;ReadPosRankSum=-5.780e-01;SOR=0.562;VQSLOD=-3.993e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:657,0,598
chr2	89105091	rs78386774	A	G	122.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898e+00;DB;DP=34;ExcessHet=3.0103;FS=8.827;MQ=51.81;MQRankSum=-1.390e+00;NEGATIVE_TRAIN_SITE;QD=3.60;ReadPosRankSum=-2.498e+00;SOR=0.032;VQSLOD=-2.518e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,8:34:99:130,0,1049
chr2	89105111	rs76924286	A	C	2030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.88;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=55.17;MQRankSum=-3.856e+00;NEGATIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=0.00;SOR=0.776;VQSLOD=-3.159e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:789,0,318
chr2	89105115	rs79445131	T	A	1400.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.959e+00;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=55.49;MQRankSum=-3.705e+00;NEGATIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.700;SOR=0.672;VQSLOD=-3.464e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:27:99:459,0,361
chr2	89105141	rs76817637	T	C	1560.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=55.44;MQRankSum=-2.884e+00;NEGATIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=1.75;SOR=0.941;VQSLOD=-3.009e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,15:21:99:0|1:89105141_T_C:638,0,204:89105141
chr2	89105142	rs79426102	G	A	1534.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.149e+00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=55.49;MQRankSum=-2.884e+00;NEGATIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=1.87;SOR=0.949;VQSLOD=-3.030e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,15:21:99:0|1:89105141_T_C:612,0,207:89105141
chr2	89105160	rs62158699	C	T	1351.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.925e+00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=55.80;MQRankSum=-2.683e+00;NEGATIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=1.29;SOR=1.217;VQSLOD=-2.490e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,15:21:99:574,0,184
chr2	89292476	rs70958972	T	TTGTGCCCTGGGAACATGCAAA	2050.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=57.69;QD=28.87;SOR=7.614;VQSLOD=4.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:32:478,32,0
chr2	89399858	rs199680096	C	CAA	960.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=35.94;POSITIVE_TRAIN_SITE;QD=28.93;SOR=2.400;VQSLOD=6.40;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr2	89512775	rs145409842	T	G	4552.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.55;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=52.14;MQRankSum=-1.460e+00;NEGATIVE_TRAIN_SITE;QD=30.56;ReadPosRankSum=0.183;SOR=0.808;VQSLOD=-2.642e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1544,125,0
chr2	89544673	.	G	T	861.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DP=52;ExcessHet=3.0103;FS=5.759;MQ=55.62;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.101;SOR=1.199;VQSLOD=-1.298e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:870,0,733
chr2	90007670	rs2847917	G	A	3706.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.62;POSITIVE_TRAIN_SITE;QD=34.17;SOR=3.235;VQSLOD=5.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1001,84,0
chr2	90008208	rs138920656	T	G	9473.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=112;ExcessHet=3.0103;FS=5.621;MQ=52.87;MQRankSum=-1.222e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=-1.286e+00;SOR=1.114;VQSLOD=-4.497e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3716,336,0
chr2	90008287	rs147071425	A	C	3450.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.61;DB;DP=39;ExcessHet=3.0103;FS=7.476;MQ=50.71;MQRankSum=1.09;NEGATIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=0.357;SOR=1.885;VQSLOD=-2.453e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1597,117,0
chr2	90108416	rs859744	G	A	8092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=1.188;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2286,230,0
chr2	90108778	rs859745	G	T	12589.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.96;SOR=1.666;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3931,372,0
chr2	90138961	rs2693251	C	G	240.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=12;ExcessHet=6.9897;FS=5.819;MQ=54.46;MQRankSum=-3.151e+00;NEGATIVE_TRAIN_SITE;QD=5.74;ReadPosRankSum=-1.076e+00;SOR=0.029;VQSLOD=-1.976e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,2:12:39:39,0,376
chr2	90139116	rs201820003	G	A	1242.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=110;ExcessHet=6.9897;FS=0.000;MQ=47.65;MQRankSum=-5.322e+00;QD=3.46;ReadPosRankSum=2.14;SOR=0.690;VQSLOD=-5.150e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,30:110:99:544,0,2379
chr2	90259695	rs33932272	A	G	254.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=56.19;MQRankSum=-3.572e+00;NEGATIVE_TRAIN_SITE;QD=5.19;ReadPosRankSum=1.94;SOR=0.336;VQSLOD=-4.184e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,4:20:81:81,0,566
chr2	90259710	rs57896409	A	C	398.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=56.84;MQRankSum=-5.313e+00;QD=4.16;ReadPosRankSum=0.319;SOR=0.797;VQSLOD=-4.080e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,3:25:46:0|1:90259710_A_C:46,0,1113:90259710
chr2	90259717	rs75674860	C	A	380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085e+00;DB;DP=28;ExcessHet=6.9897;FS=2.311;MQ=57.12;MQRankSum=-5.683e+00;QD=3.63;ReadPosRankSum=0.149;SOR=1.101;VQSLOD=-4.509e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,3:28:37:0|1:90259710_A_C:37,0,1192:90259710
chr2	90458172	rs372544642	A	G	3274.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=42.37;QD=34.13;SOR=3.492;VQSLOD=-5.203e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:959,84,0
chr2	91678818	rs201028672	G	A	1333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.040e-01;DB;DP=47;ExcessHet=6.9897;FS=1.317;MQ=42.47;MQRankSum=-3.378e+00;QD=6.74;ReadPosRankSum=0.195;SOR=0.955;VQSLOD=-4.617e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,12:47:99:0|1:91678818_G_A:393,0,1503:91678818
chr2	91678825	rs199621368	G	A	1501.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=53;ExcessHet=6.9897;FS=0.000;MQ=42.36;MQRankSum=-3.656e+00;QD=6.50;ReadPosRankSum=0.722;SOR=0.635;VQSLOD=-4.649e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,13:53:99:0|1:91678818_G_A:405,0,1601:91678818
chr2	91678867	rs79383010	A	T	9990.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.643e+00;DB;DP=145;ExcessHet=6.9897;FS=0.000;MQ=42.05;MQRankSum=-4.356e+00;QD=18.64;ReadPosRankSum=2.68;SOR=0.659;VQSLOD=-4.761e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,89:145:99:2705,0,1625
chr2	91678874	rs201550813	G	A	605.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.834e+00;DB;DP=168;ExcessHet=6.9897;FS=1.093;MQ=41.86;MQRankSum=-4.455e+00;QD=1.00;ReadPosRankSum=1.41;SOR=0.468;VQSLOD=-5.259e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,20:168:37:37,0,6007
chr2	91678903	rs80029187	A	G	3242.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.138e+00;DB;DP=261;ExcessHet=6.9897;FS=4.225;MQ=41.44;MQRankSum=-2.710e+00;QD=3.77;ReadPosRankSum=3.30;SOR=0.390;VQSLOD=-4.450e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:220,41:261:99:615,0,6055
chr2	91714649	.	CAAAAA	C	649.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DP=13;ExcessHet=4.7712;FS=0.000;MQ=32.47;MQRankSum=-3.240e-01;QD=25.99;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=1.39;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,11:13:29:0|1:91714645_G_A:440,0,29:91714645
chr2	91714871	rs201808041	G	GCA	251.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=25.48;MQRankSum=-6.050e-01;QD=8.97;ReadPosRankSum=0.792;SOR=0.223;VQSLOD=0.161;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:159,0,198
chr2	91766609	rs56138505	G	A	608.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150e-01;DB;DP=159;ExcessHet=3.9794;FS=1.745;MQ=55.25;MQRankSum=-1.044e+00;NEGATIVE_TRAIN_SITE;QD=1.74;ReadPosRankSum=0.321;SOR=0.837;VQSLOD=-3.533e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:126,33:159:99:494,0,3307
chr2	91766685	rs2258279	G	T	3906.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=120;ExcessHet=6.9897;FS=7.189;MQ=54.01;MQRankSum=-8.212e+00;QD=9.74;ReadPosRankSum=-1.043e+00;SOR=1.286;VQSLOD=-4.034e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:87,33:120:99:0|1:91766685_G_T:1053,0,3471:91766685
chr2	91766779	rs2433881	A	T	3988.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.330e-01;DB;DP=47;ExcessHet=6.9897;FS=4.129;MQ=53.28;MQRankSum=-4.387e+00;NEGATIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=-7.100e-01;SOR=0.371;VQSLOD=-2.121e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,33:47:99:941,0,333
chr2	91767199	rs2558010	A	C	1379.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=59.72;MQRankSum=0.00;QD=11.79;ReadPosRankSum=0.967;SOR=0.502;VQSLOD=3.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:261,0,613
chr2	91767507	rs2580541	T	A	819.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=139;ExcessHet=6.9897;FS=1.756;MQ=59.82;MQRankSum=0.00;QD=1.79;ReadPosRankSum=0.408;SOR=0.917;VQSLOD=3.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:120,19:139:99:150,0,3347
chr2	91767525	.	T	C	356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DP=109;ExcessHet=3.0103;FS=1.033;MQ=59.60;MQRankSum=0.842;NEGATIVE_TRAIN_SITE;QD=3.27;ReadPosRankSum=-1.139e+00;SOR=0.877;VQSLOD=-1.589e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:89,20:109:99:365,0,2337
chr2	91767630	rs2599141	A	G	963.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=57.52;MQRankSum=-2.927e+00;NEGATIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.605;SOR=0.382;VQSLOD=-1.886e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:92:92,0,319
chr2	91809039	rs1649490	G	A	1139.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=20;ExcessHet=6.9897;FS=6.214;MQ=60.00;MQRankSum=0.00;QD=16.52;ReadPosRankSum=-9.670e-01;SOR=2.944;VQSLOD=16.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:347,0,272
chr2	91809094	.	G	A	31.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098e+00;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.74;ReadPosRankSum=0.515;SOR=0.269;VQSLOD=20.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:38,4:42:40:40,0,1462
chr2	91809227	rs2536993	A	G	9045.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397e+00;DB;DP=247;ExcessHet=6.9897;FS=1.135;MQ=57.06;MQRankSum=-7.242e+00;QD=11.82;ReadPosRankSum=0.271;SOR=0.817;VQSLOD=-4.482e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:132,115:247:99:2731,0,3286
chr2	91809456	rs2191971	T	G	1794.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;DB;DP=55;ExcessHet=6.9897;FS=11.243;MQ=54.05;MQRankSum=-6.770e+00;QD=8.97;ReadPosRankSum=-3.950e-01;SOR=1.539;VQSLOD=-4.039e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,21:55:99:562,0,934
chr2	91809470	rs2386154	G	A	2887.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430e-01;DB;DP=46;ExcessHet=6.9897;FS=12.164;MQ=54.09;MQRankSum=-5.821e+00;QD=16.41;ReadPosRankSum=-1.797e+00;SOR=1.771;VQSLOD=-3.375e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,19:46:99:0|1:91809468_C_CTAA:716,0,1077:91809468
chr2	91902736	rs201023881	G	A	172.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=15;ExcessHet=3.0103;FS=2.158;MQ=49.47;MQRankSum=-5.590e-01;NEGATIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-5.730e-01;SOR=0.588;VQSLOD=-3.242e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:181,0,131
chr2	91924782	rs28380329	C	A	505.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=52.60;MQRankSum=-1.725e+00;NEGATIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-5.470e-01;SOR=0.200;VQSLOD=-2.624e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:131,0,169
chr2	91924804	rs925176	T	C	1021.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=55.20;MQRankSum=-3.267e+00;NEGATIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=1.10;SOR=0.490;VQSLOD=-3.238e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:242,0,354
chr2	91924972	rs200581143	G	A	1145.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=120;ExcessHet=6.9897;FS=7.163;MQ=54.27;MQRankSum=-2.717e+00;NEGATIVE_TRAIN_SITE;QD=2.84;ReadPosRankSum=-9.460e-01;SOR=1.496;VQSLOD=-2.693e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,16:120:99:199,0,2978
chr2	91925022	rs28577290	C	A	8051.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e+00;DB;DP=157;ExcessHet=6.9897;FS=0.000;MQ=56.06;MQRankSum=0.614;NEGATIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.449;SOR=0.714;VQSLOD=-2.636e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,88:157:99:2303,0,1807
chr2	91925139	rs62143830	C	G	6570.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010e-01;DB;DP=154;ExcessHet=6.9897;FS=9.841;MQ=53.72;MQRankSum=-2.442e+00;NEGATIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.632;SOR=1.277;VQSLOD=-2.236e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,58:154:99:1300,0,2478
chr2	91925151	rs114729754	C	T	9779.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=143;ExcessHet=6.9897;FS=4.790;MQ=53.12;MQRankSum=-6.008e+00;QD=18.81;ReadPosRankSum=-1.297e+00;SOR=1.078;VQSLOD=-2.615e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,95:143:99:2323,0,978
chr2	91925267	rs4569522	T	C	1169.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=15;ExcessHet=6.9897;FS=9.411;MQ=49.09;MQRankSum=-4.798e+00;QD=16.25;ReadPosRankSum=0.00;SOR=3.479;VQSLOD=-5.169e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:183,0,283
chr2	91926926	rs2659423	C	T	692.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.787e+00;DB;DP=19;ExcessHet=6.9897;FS=5.504;MQ=59.75;MQRankSum=0.00;QD=10.04;ReadPosRankSum=-9.610e-01;SOR=0.191;VQSLOD=3.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,3:19:63:63,0,516
chr2	91927088	rs2659422	G	A	4700.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785e+00;DB;DP=128;ExcessHet=6.9897;FS=0.381;MQ=59.65;MQRankSum=-1.014e+00;QD=12.64;ReadPosRankSum=0.530;SOR=0.734;VQSLOD=-7.018e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:63,65:128:99:1357,0,1564
chr2	91927130	rs144807459	C	G	7379.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.04;DB;DP=138;ExcessHet=6.9897;FS=2.494;MQ=58.74;MQRankSum=-3.696e+00;NEGATIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=1.48;SOR=0.894;VQSLOD=-1.882e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,64:138:99:0|1:91927130_C_G:2465,0,2915:91927130
chr2	91927131	rs146510532	C	G	7379.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=138;ExcessHet=6.9897;FS=2.501;MQ=58.73;MQRankSum=-3.696e+00;NEGATIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=1.74;SOR=0.905;VQSLOD=-1.981e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,64:138:99:0|1:91927130_C_G:2465,0,2915:91927130
chr2	91927184	rs376957269	C	T	911.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e+00;DB;DP=142;ExcessHet=3.0103;FS=6.771;MQ=57.40;MQRankSum=-6.545e+00;QD=6.42;ReadPosRankSum=1.56;SOR=0.571;VQSLOD=-3.806e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:95,47:142:99:920,0,2803
chr2	91927583	rs112716802	C	T	486.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.789e+00;DB;DP=47;ExcessHet=3.0103;FS=4.168;MQ=53.46;MQRankSum=-5.754e+00;QD=10.35;ReadPosRankSum=-3.300e-02;SOR=0.086;VQSLOD=-2.977e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,18:47:99:495,0,1126
chr2	91927685	rs2659421	C	T	519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=6.9897;FS=3.332;MQ=58.19;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=0.464;SOR=1.954;VQSLOD=-1.286e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:173,0,121
chr2	91933369	rs71422468	T	C	964.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=18;ExcessHet=6.9897;FS=3.862;MQ=57.35;MQRankSum=-2.758e+00;NEGATIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-4.700e-02;SOR=0.110;VQSLOD=-2.046e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:164,0,435
chr2	91933400	rs71422469	G	A	657.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=10;ExcessHet=6.9897;FS=4.075;MQ=57.12;MQRankSum=-2.287e+00;NEGATIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.967;SOR=0.092;VQSLOD=-1.945e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:91933400_G_A:60,0,528:91933400
chr2	91933409	rs71422470	A	C	620.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=6.9897;FS=3.928;MQ=56.85;MQRankSum=-2.200e+00;NEGATIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.812;SOR=0.102;VQSLOD=-1.934e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:91933400_G_A:63,0,492:91933400
chr2	91936121	rs75268796	A	G	9789.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=429;ExcessHet=6.9897;FS=4.374;MQ=57.34;MQRankSum=-2.630e+00;NEGATIVE_TRAIN_SITE;QD=7.91;ReadPosRankSum=0.834;SOR=0.489;VQSLOD=-2.539e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:280,149:429:99:3512,0,7306
chr2	91936138	rs74705314	G	A	16550.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.80;DB;DP=434;ExcessHet=6.9897;FS=2.595;MQ=58.63;MQRankSum=-5.490e+00;QD=13.49;ReadPosRankSum=3.78;SOR=0.490;VQSLOD=-4.158e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:268,166:434:99:0|1:91936138_G_A:6086,0,10620:91936138
chr2	91936239	rs113287833	A	G	10108.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.504e+00;DB;DP=289;ExcessHet=6.9897;FS=1.832;MQ=57.74;MQRankSum=-6.337e+00;QD=13.13;ReadPosRankSum=0.379;SOR=0.562;VQSLOD=-3.247e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:148,141:289:99:3401,0,3896
chr2	91936312	rs62145879	C	G	4312.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.95;DB;DP=134;ExcessHet=3.9794;FS=10.514;MQ=56.00;MQRankSum=-7.106e+00;QD=16.33;ReadPosRankSum=1.01;SOR=1.306;VQSLOD=-3.360e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:76,58:134:99:0|1:91936312_C_G:2038,0,3533:91936312
chr2	91936320	rs62145880	A	C	5516.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.42;DB;DP=118;ExcessHet=6.9897;FS=4.171;MQ=55.56;MQRankSum=-6.768e+00;QD=16.13;ReadPosRankSum=-8.540e-01;SOR=0.933;VQSLOD=-3.651e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:72,46:118:99:0|1:91936312_C_G:1707,0,3470:91936312
chr2	91937490	rs2456609	T	C	601.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DB;DP=21;ExcessHet=6.9897;FS=1.095;MQ=51.92;MQRankSum=-3.546e+00;NEGATIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=1.32;SOR=0.489;VQSLOD=-3.795e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:138,0,396
chr2	91937662	rs2659395	A	G	2560.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DB;DP=89;ExcessHet=6.9897;FS=0.471;MQ=56.48;MQRankSum=-2.855e+00;NEGATIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-7.130e-01;SOR=0.648;VQSLOD=-2.881e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,43:89:99:955,0,960
chr2	91937699	rs2659394	C	T	2164.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=78;ExcessHet=6.9897;FS=0.526;MQ=58.93;MQRankSum=-3.744e+00;NEGATIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=0.00;SOR=0.630;VQSLOD=-1.575e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,34:78:99:771,0,923
chr2	91937761	rs2659393	C	T	1421.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704e+00;DB;DP=43;ExcessHet=6.9897;FS=7.198;MQ=57.22;MQRankSum=-4.413e+00;NEGATIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.368;SOR=0.278;VQSLOD=-2.172e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,22:43:99:563,0,664
chr2	91937775	rs2659392	G	A	1218.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555e+00;DB;DP=34;ExcessHet=6.9897;FS=2.087;MQ=56.59;MQRankSum=-4.422e+00;NEGATIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.625;SOR=0.446;VQSLOD=-3.309e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,19:34:99:503,0,448
chr2	91940565	rs202159010	C	A	750.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=159;ExcessHet=3.0103;FS=4.755;MQ=59.54;MQRankSum=1.47;NEGATIVE_TRAIN_SITE;QD=4.72;ReadPosRankSum=0.434;SOR=0.370;VQSLOD=-1.870e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:123,36:159:99:0|1:91940565_C_A:759,0,4596:91940565
chr2	91940568	rs367639722	T	C	2295.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003e+00;DB;DP=161;ExcessHet=3.0103;FS=7.081;MQ=59.54;MQRankSum=-2.360e+00;NEGATIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-1.301e+00;SOR=1.202;VQSLOD=-1.735e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:70,91:161:99:1|0:91940565_C_A:2304,0,2222:91940565
chr2	91940702	rs116820320	C	T	1727.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586e+00;DB;DP=35;ExcessHet=6.9897;FS=10.466;MQ=59.86;MQRankSum=0.00;QD=14.05;ReadPosRankSum=-4.180e-01;SOR=2.078;VQSLOD=0.332;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,12:35:99:354,0,735
chr2	91944312	rs115171467	T	C	2194.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.03;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=56.82;MQRankSum=-3.128e+00;NEGATIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=0.362;SOR=1.265;VQSLOD=-2.236e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,21:30:99:798,0,260
chr2	91955313	rs139724769	G	A	11515.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.822e+00;DB;DP=334;ExcessHet=6.9897;FS=1.773;MQ=58.49;MQRankSum=-5.453e+00;QD=11.14;ReadPosRankSum=-8.600e-01;SOR=0.815;VQSLOD=-2.539e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:199,135:334:99:3411,0,5227
chr2	91955375	rs74324957	G	A	2727.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=199;ExcessHet=3.9794;FS=1.452;MQ=55.95;MQRankSum=-4.807e+00;NEGATIVE_TRAIN_SITE;QD=6.92;ReadPosRankSum=-7.890e-01;SOR=0.797;VQSLOD=-4.251e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:170,29:199:99:331,0,4834
chr2	91960700	rs79322576	T	C	418.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=13;ExcessHet=6.9897;FS=13.195;MQ=58.01;MQRankSum=-2.132e+00;NEGATIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=0.303;SOR=0.057;VQSLOD=-2.232e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,2:13:47:0|1:91960700_T_C:47,0,545:91960700
chr2	91961118	rs78620912	A	G	189.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=55.21;MQRankSum=-1.221e+00;NEGATIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.842;SOR=0.283;VQSLOD=-2.842e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:35:35,0,233
chr2	91962876	rs7567047	G	A	1298.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=50;ExcessHet=6.9897;FS=7.648;MQ=45.90;MQRankSum=-4.066e+00;QD=10.65;ReadPosRankSum=0.433;SOR=1.305;VQSLOD=-3.694e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,19:50:99:0|1:91962876_G_A:691,0,1389:91962876
chr2	91962879	rs7582758	A	T	1301.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=51;ExcessHet=6.9897;FS=7.794;MQ=46.18;MQRankSum=-4.152e+00;QD=10.76;ReadPosRankSum=0.309;SOR=1.432;VQSLOD=-3.771e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,19:51:99:0|1:91962876_G_A:691,0,1389:91962876
chr2	91962942	rs62144313	G	A	210.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=30;ExcessHet=3.0103;FS=1.537;MQ=50.28;MQRankSum=-3.617e+00;NEGATIVE_TRAIN_SITE;QD=7.03;ReadPosRankSum=-1.916e+00;SOR=1.071;VQSLOD=-3.804e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:217,0,457
chr2	91962954	rs74613653	C	A	174.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.080e-01;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=50.74;MQRankSum=-3.591e+00;NEGATIVE_TRAIN_SITE;QD=6.23;ReadPosRankSum=-1.655e+00;SOR=0.770;VQSLOD=-3.955e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:182,0,478
chr2	91963051	rs4079559	A	G	83.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=54.23;MQRankSum=-2.189e+00;NEGATIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-6.520e-01;SOR=1.609;VQSLOD=-1.984e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:89:89,0,107
chr2	92047381	rs74625192	T	C	275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=9;ExcessHet=6.9897;FS=1.606;MQ=50.49;MQRankSum=-2.515e+00;NEGATIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-9.920e-01;SOR=0.392;VQSLOD=-3.311e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:61:61,0,150
chr2	92047432	rs199967157	G	C	810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DB;DP=11;ExcessHet=6.9897;FS=1.204;MQ=49.87;MQRankSum=-3.067e+00;NEGATIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=0.175;SOR=0.990;VQSLOD=-3.039e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:92047432_G_C:192,0,343:92047432
chr2	92047438	rs77712042	T	C	807.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DB;DP=11;ExcessHet=6.9897;FS=1.204;MQ=50.13;MQRankSum=-3.067e+00;NEGATIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.525;SOR=0.928;VQSLOD=-3.094e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:92047432_G_C:192,0,343:92047432
chr2	92047442	rs2873765	C	T	810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=11;ExcessHet=6.9897;FS=2.694;MQ=49.87;MQRankSum=-3.067e+00;NEGATIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=0.880;SOR=0.869;VQSLOD=-2.898e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:92047432_G_C:192,0,343:92047432
chr2	92047529	rs4059877	G	A	360.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=6.9897;FS=1.523;MQ=50.96;MQRankSum=-2.450e+00;NEGATIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-4.050e-01;SOR=0.404;VQSLOD=-3.145e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:89:0|1:92047529_G_A:123,0,89:92047529
chr2	92047549	rs2318653	C	T	182.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.530e-01;DB;DP=2;ExcessHet=6.9897;FS=0.000;MQ=50.11;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=-6.740e-01;SOR=1.179;VQSLOD=-2.920e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:13:0|1:92047529_G_A:35,0,13:92047529
chr2	92075572	rs28449591	T	C	291.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.110e-01;DB;DP=73;ExcessHet=3.9794;FS=1.698;MQ=49.70;MQRankSum=-3.958e+00;NEGATIVE_TRAIN_SITE;QD=1.65;ReadPosRankSum=-3.160e-01;SOR=0.941;VQSLOD=-4.188e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,11:73:99:0|1:92075572_T_C:272,0,2679:92075572
chr2	92075584	rs58932462	G	A	288.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.650e-01;DB;DP=74;ExcessHet=3.9794;FS=0.786;MQ=49.43;MQRankSum=-3.950e+00;NEGATIVE_TRAIN_SITE;QD=1.63;ReadPosRankSum=0.488;SOR=0.867;VQSLOD=-4.347e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:63,11:74:99:0|1:92075572_T_C:269,0,2798:92075572
chr2	92075603	rs56975285	C	G	287.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.400e-02;DB;DP=70;ExcessHet=3.9794;FS=0.000;MQ=48.74;MQRankSum=-3.602e+00;QD=1.63;ReadPosRankSum=1.77;SOR=0.700;VQSLOD=-4.499e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,11:70:99:0|1:92075572_T_C:278,0,2656:92075572
chr2	92075615	rs111681132	A	G	2935.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.288e+00;DB;DP=71;ExcessHet=6.9897;FS=5.354;MQ=48.56;MQRankSum=-4.231e+00;QD=10.60;ReadPosRankSum=1.36;SOR=0.444;VQSLOD=-2.589e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,10:71:99:0|1:92075615_A_G:236,0,2547:92075615
chr2	92075618	rs113086124	T	C	2935.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.960e-01;DB;DP=70;ExcessHet=6.9897;FS=5.394;MQ=48.42;MQRankSum=-4.029e+00;QD=10.72;ReadPosRankSum=1.04;SOR=0.432;VQSLOD=-2.464e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,10:70:99:0|1:92075615_A_G:236,0,2547:92075615
chr2	92075628	rs59720433	A	G	369.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DB;DP=64;ExcessHet=3.9794;FS=0.796;MQ=47.63;MQRankSum=-3.883e+00;QD=2.32;ReadPosRankSum=1.24;SOR=0.539;VQSLOD=-4.470e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,12:64:99:0|1:92075572_T_C:327,0,2254:92075572
chr2	92075709	rs11240891	A	G	887.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=14;ExcessHet=6.9897;FS=2.511;MQ=52.89;MQRankSum=-4.575e+00;NEGATIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-9.200e-01;SOR=0.173;VQSLOD=-3.142e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,4:14:99:0|1:92075703_AC_A:138,0,531:92075703
chr2	95464865	.	C	A	43.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.620e-01;DP=9;ExcessHet=3.0103;FS=0.000;MQ=54.04;MQRankSum=-3.190e-01;NEGATIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=0.00;SOR=0.132;VQSLOD=-2.966e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:52:52,0,252
chr2	95483076	.	C	T	95.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414e+00;DP=13;ExcessHet=3.9794;FS=0.000;MQ=43.26;MQRankSum=-4.530e-01;QD=2.88;ReadPosRankSum=1.39;SOR=0.941;VQSLOD=-4.694e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,3:13:76:0|1:95483076_C_T:76,0,441:95483076
chr2	95483082	.	CTTGTT	C	70.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DP=10;ExcessHet=3.0103;FS=0.000;MQ=35.56;MQRankSum=-9.670e-01;QD=7.03;ReadPosRankSum=0.967;SOR=0.446;VQSLOD=0.268;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:79:0|1:95483076_C_T:79,0,417:95483076
chr2	95483093	rs201467986	G	A	82.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=10;ExcessHet=3.9794;FS=5.528;MQ=46.16;MQRankSum=-9.000e-01;QD=2.83;ReadPosRankSum=2.06;SOR=2.267;VQSLOD=-4.218e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:95483076_C_T:60,0,395:95483076
chr2	95483126	rs199792758	T	C	65.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=6;ExcessHet=3.9794;FS=5.478;MQ=48.69;MQRankSum=-6.230e-01;QD=2.71;ReadPosRankSum=-4.310e-01;SOR=2.215;VQSLOD=-3.398e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:41:41,0,103
chr2	95497792	.	C	G	54.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-02;DP=54;ExcessHet=3.0103;FS=0.000;MQ=51.94;MQRankSum=-3.841e+00;NEGATIVE_TRAIN_SITE;QD=1.01;ReadPosRankSum=-1.955e+00;SOR=0.994;VQSLOD=-4.307e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,5:54:62:0|1:95497792_C_G:62,0,2773:95497792
chr2	95511265	rs76425379	C	A	115.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602e+00;DB;DP=11;ExcessHet=6.9897;FS=2.759;MQ=55.59;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=3.13;ReadPosRankSum=-4.510e-01;SOR=0.169;VQSLOD=-3.131e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:16:16,0,319
chr2	95513731	rs199837605	C	T	1065.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205e+00;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=50.55;MQRankSum=-1.661e+00;NEGATIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.406;SOR=0.657;VQSLOD=-3.214e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,6:30:99:0|1:95513731_C_T:180,0,973:95513731
chr2	95513741	rs374925913	C	A	1160.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e+00;DB;DP=33;ExcessHet=6.9897;FS=3.543;MQ=51.83;MQRankSum=-1.396e+00;NEGATIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.925;SOR=0.354;VQSLOD=-2.413e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,7:33:99:0|1:95513731_C_T:216,0,1054:95513731
chr2	95513742	rs369381393	C	T	1160.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295e+00;DB;DP=33;ExcessHet=6.9897;FS=3.543;MQ=51.83;MQRankSum=-1.396e+00;NEGATIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=1.04;SOR=0.354;VQSLOD=-2.427e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,7:33:99:0|1:95513731_C_T:216,0,1054:95513731
chr2	95513809	rs146283440	C	T	2374.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136e+00;DB;DP=67;ExcessHet=6.9897;FS=1.138;MQ=55.56;MQRankSum=-2.331e+00;NEGATIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.337;SOR=0.806;VQSLOD=-3.236e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:55,12:67:99:0|1:95513809_C_T:354,0,2272:95513809
chr2	95513817	rs75978644	G	T	2533.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.019e+00;DB;DP=75;ExcessHet=6.9897;FS=0.520;MQ=55.60;MQRankSum=-2.541e+00;NEGATIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=0.118;SOR=0.771;VQSLOD=-3.285e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,14:75:99:0|1:95513809_C_T:349,0,2356:95513809
chr2	95513852	rs6707709	C	T	2187.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DB;DP=73;ExcessHet=6.9897;FS=3.267;MQ=57.13;MQRankSum=-3.190e+00;NEGATIVE_TRAIN_SITE;QD=9.19;ReadPosRankSum=0.391;SOR=0.890;VQSLOD=-2.967e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,12:73:99:0|1:95513852_C_T:300,0,2504:95513852
chr2	95513854	.	G	C	1761.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DP=72;ExcessHet=6.9897;FS=3.328;MQ=57.31;MQRankSum=-3.380e+00;NEGATIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=0.021;SOR=0.933;VQSLOD=-3.051e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,11:72:99:0|1:95513852_C_T:300,0,2504:95513852
chr2	95513877	rs75617483	A	G	1964.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=59;ExcessHet=6.9897;FS=1.907;MQ=56.98;MQRankSum=-3.284e+00;NEGATIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-1.900e-01;SOR=0.864;VQSLOD=-2.841e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,11:59:99:0|1:95513877_A_G:316,0,1962:95513877
chr2	95513880	rs113232879	C	T	1897.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940e-01;DB;DP=58;ExcessHet=6.9897;FS=0.581;MQ=56.83;MQRankSum=-3.246e+00;NEGATIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=0.026;SOR=0.768;VQSLOD=-2.721e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,11:58:99:0|1:95513877_A_G:316,0,1962:95513877
chr2	95513889	rs148623499	T	A	1816.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970e-01;DB;DP=53;ExcessHet=6.9897;FS=1.320;MQ=56.50;MQRankSum=-2.779e+00;NEGATIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-5.950e-01;SOR=0.558;VQSLOD=-2.941e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,9:53:99:0|1:95513877_A_G:284,0,1859:95513877
chr2	95513893	rs80295192	A	G	1753.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870e-01;DB;DP=54;ExcessHet=6.9897;FS=1.335;MQ=56.36;MQRankSum=-2.467e+00;NEGATIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=-1.022e+00;SOR=0.566;VQSLOD=-3.072e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,9:54:99:0|1:95513877_A_G:242,0,1842:95513877
chr2	95513989	rs111499700	C	T	429.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=6;ExcessHet=6.9897;FS=1.765;MQ=47.09;MQRankSum=-2.542e+00;QD=7.41;ReadPosRankSum=0.431;SOR=1.289;VQSLOD=-3.399e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,124
chr2	95514005	rs138341563	T	C	340.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=44.26;MQRankSum=-1.724e+00;QD=8.32;ReadPosRankSum=0.788;SOR=0.470;VQSLOD=-4.042e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,1:4:33:0|1:95514005_T_C:33,0,238:95514005
chr2	95514020	rs201744287	C	T	242.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=42.93;MQRankSum=-1.679e+00;QD=8.10;ReadPosRankSum=1.10;SOR=0.138;VQSLOD=-3.880e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,1:4:33:0|1:95514005_T_C:33,0,200:95514005
chr2	95537952	rs138557262	CCT	C	344.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=-1.130e-01;SOR=1.112;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:353,0,246
chr2	95787810	rs3112227	T	G	799.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=5.994;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr2	95830652	rs6719142	T	C	1429.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.294;DB;DP=18;ExcessHet=3.0103;FS=1.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=-9.440e-01;SOR=1.460;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:721,54,0
chr2	95830737	rs11395151	C	CA	3986.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.177e+00;DB;DP=54;ExcessHet=3.0103;FS=0.866;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=1.42;SOR=0.562;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1707,162,0
chr2	95843080	rs35376938	TC	T	1060.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=11;ExcessHet=3.0103;FS=7.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.20;ReadPosRankSum=-7.550e-01;SOR=4.680;VQSLOD=2.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:391,33,0
chr2	95846158	rs3112230	T	C	1621.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.369;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.51;ReadPosRankSum=-1.315e+00;SOR=1.292;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:623,42,0
chr2	95847040	rs10578519	TGCG	T	15112.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.09;SOR=1.440;VQSLOD=5.21;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,117:117:99:5207,352,0
chr2	95848018	rs3105105	T	C	542.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.89;ReadPosRankSum=1.01;SOR=2.584;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr2	95944902	rs61086044	A	AC	1971.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.42;SOR=0.922;VQSLOD=4.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:848,72,0
chr2	95945568	rs7585914	G	A	7851.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.440e-01;DB;DP=102;ExcessHet=3.0103;FS=3.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=-8.770e-01;SOR=0.986;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3284,305,0
chr2	95945830	rs7586229	G	T	3600.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.391;DB;DP=46;ExcessHet=3.0103;FS=0.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=-9.760e-01;SOR=0.883;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1561,138,0
chr2	95947085	rs12992066	A	G	12923.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.030e-01;DB;DP=205;ExcessHet=3.0103;FS=3.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.41;ReadPosRankSum=-1.450e-01;SOR=0.450;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,205:205:99:6129,614,0
chr2	95951647	rs6739268	G	A	652.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.63;SOR=3.500;VQSLOD=20.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:171,15,0
chr2	95952177	rs7602232	C	G	5814.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=0.751;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2054,195,0
chr2	95962959	rs7557414	G	C	562.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.9794;FS=4.559;MQ=60.00;MQRankSum=0.00;QD=27.81;ReadPosRankSum=1.83;SOR=2.985;VQSLOD=4.18;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:72:0|1:95962959_G_C:109,0,72:95962959
chr2	95963242	rs2248415	C	G	2989.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.33;DB;DP=32;ExcessHet=3.0103;FS=20.217;MQ=60.00;MQRankSum=0.00;QD=30.20;ReadPosRankSum=-9.870e-01;SOR=3.504;VQSLOD=8.73;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1332,96,0
chr2	96012907	rs7602807	C	G	21925.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.440e-01;DB;DP=309;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=0.130;SOR=0.695;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,309:309:99:9551,927,0
chr2	96048862	rs58372613	C	T	463.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.231;DB;DP=3;ExcessHet=3.9794;FS=6.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=0.357;SOR=0.730;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:96,9,0
chr2	96049917	.	T	TAC	144.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=1.65;SOR=1.402;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:40:93,0,40
chr2	96076409	rs6577014	C	T	3722.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=56.91;POSITIVE_TRAIN_SITE;QD=30.79;SOR=1.216;VQSLOD=2.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1002,75,0
chr2	96146428	.	T	G	234.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940e-01;DP=19;ExcessHet=3.0103;FS=3.139;MQ=42.83;MQRankSum=-7.370e-01;QD=12.33;ReadPosRankSum=0.207;SOR=2.115;VQSLOD=-3.978e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:243,0,303
chr2	96260204	.	A	G	3094.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DP=236;ExcessHet=3.0103;FS=6.227;MQ=56.28;MQRankSum=2.18;NEGATIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=1.99;SOR=0.416;VQSLOD=-1.382e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,128:236:99:3103,0,2557
chr2	96260979	rs7565318	T	C	514.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=55.02;POSITIVE_TRAIN_SITE;QD=29.50;SOR=5.136;VQSLOD=5.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr2	96517518	rs74755605	A	G	8333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DB;DP=138;ExcessHet=6.9897;FS=15.667;MQ=54.25;MQRankSum=-6.978e+00;QD=20.03;ReadPosRankSum=-1.100e+00;SOR=1.455;VQSLOD=-3.728e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,88:138:99:0|1:96517471_A_G:3275,0,1917:96517471
chr2	96517570	rs5006955	C	T	2394.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468e+00;DB;DP=154;ExcessHet=6.9897;FS=8.498;MQ=54.50;MQRankSum=-3.353e+00;NEGATIVE_TRAIN_SITE;QD=5.23;ReadPosRankSum=2.13;SOR=0.598;VQSLOD=-2.677e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,36:154:99:600,0,2929
chr2	96517636	rs74685041	G	A	965.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.260e-01;DB;DP=98;ExcessHet=3.9794;FS=5.398;MQ=55.26;MQRankSum=-1.635e+00;NEGATIVE_TRAIN_SITE;QD=4.95;ReadPosRankSum=-5.690e-01;SOR=0.378;VQSLOD=-1.837e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,10:98:28:28,0,3311
chr2	96517640	rs75206467	T	A	2183.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246e+00;DB;DP=92;ExcessHet=6.9897;FS=3.734;MQ=55.29;MQRankSum=-1.479e+00;NEGATIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=0.382;SOR=0.438;VQSLOD=-2.459e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:66,26:92:99:0|1:96517640_T_A:936,0,2674:96517640
chr2	96517641	rs77668477	C	T	4331.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.014e+00;DB;DP=86;ExcessHet=6.9897;FS=0.501;MQ=55.46;MQRankSum=-1.436e+00;NEGATIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=0.858;SOR=0.732;VQSLOD=-2.893e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1147,0,1850
chr2	96517642	rs4063058	A	G	5817.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=88;ExcessHet=6.9897;FS=0.000;MQ=55.42;MQRankSum=-1.284e+00;NEGATIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=-2.620e-01;SOR=0.704;VQSLOD=-2.611e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,42:88:99:1605,0,1830
chr2	96517646	rs75612714	A	G	2098.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=86;ExcessHet=6.9897;FS=3.992;MQ=55.48;MQRankSum=-1.039e+00;NEGATIVE_TRAIN_SITE;QD=7.89;ReadPosRankSum=-2.960e-01;SOR=0.418;VQSLOD=-2.232e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,26:86:99:0|1:96517640_T_A:911,0,2480:96517640
chr2	96517653	rs5006956	C	T	7820.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=71;ExcessHet=6.9897;FS=2.385;MQ=55.39;MQRankSum=-3.216e+00;NEGATIVE_TRAIN_SITE;QD=33.14;ReadPosRankSum=-8.260e-01;SOR=0.474;VQSLOD=-2.552e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,53:71:99:0|1:96517653_C_T:2339,0,623:96517653
chr2	96517656	rs2872927	T	C	7381.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=65;ExcessHet=6.9897;FS=1.584;MQ=55.28;MQRankSum=-3.042e+00;NEGATIVE_TRAIN_SITE;QD=33.55;ReadPosRankSum=-1.830e+00;SOR=0.566;VQSLOD=-2.882e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,50:65:99:0|1:96517653_C_T:2138,0,512:96517653
chr2	96517664	rs10570945	CTG	C	3677.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=58;ExcessHet=6.9897;FS=0.633;MQ=55.08;MQRankSum=-1.220e+00;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=0.936;SOR=0.596;VQSLOD=1.96;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,23:58:99:0|1:96517664_CTG_C:879,0,1478:96517664
chr2	96517671	rs74850741	A	AT	1132.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=53;ExcessHet=6.9897;FS=0.772;MQ=55.15;MQRankSum=-6.500e-01;QD=6.09;ReadPosRankSum=-5.660e-01;SOR=0.798;VQSLOD=0.456;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,15:53:99:327,0,1604
chr2	96517687	rs10529658	TTTG	T	2672.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.710e-01;DB;DP=39;ExcessHet=6.9897;FS=0.000;MQ=55.60;MQRankSum=-1.319e+00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=0.357;SOR=0.697;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,16:39:99:0|1:96517664_CTG_C:726,0,989:96517664
chr2	96517733	.	T	C	50.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DP=24;ExcessHet=3.0103;FS=0.000;MQ=53.85;MQRankSum=-7.650e-01;NEGATIVE_TRAIN_SITE;QD=2.09;ReadPosRankSum=0.437;SOR=0.495;VQSLOD=-3.527e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,3:24:59:59,0,849
chr2	96517736	rs62156869	G	T	1222.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=24;ExcessHet=6.9897;FS=2.533;MQ=54.40;MQRankSum=-3.294e+00;NEGATIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-1.269e+00;SOR=0.477;VQSLOD=-3.226e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:280,0,583
chr2	96517760	rs79580617	T	A	1296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.763e+00;DB;DP=29;ExcessHet=6.9897;FS=2.810;MQ=50.93;MQRankSum=-9.530e-01;NEGATIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.508;SOR=0.435;VQSLOD=-2.756e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:253,0,798
chr2	96517783	rs113889919	CTAA	C	1826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=36;ExcessHet=6.9897;FS=1.671;MQ=48.95;MQRankSum=-2.056e+00;QD=11.64;ReadPosRankSum=-4.170e-01;SOR=0.511;VQSLOD=0.304;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,12:36:99:427,0,966
chr2	96517785	rs62156870	A	*,T	342.22	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.45;DB;DP=36;ExcessHet=3.9794;FS=3.925;MQ=48.88;MQRankSum=-4.287e+00;QD=2.19;ReadPosRankSum=-5.200e-02;SOR=1.151;VQSLOD=-3.490e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:11,12,13:36:99:652,168,636,171,0,433
chr2	96517824	rs76217973	C	T	5769.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=74;ExcessHet=6.9897;FS=2.257;MQ=48.20;MQRankSum=-8.002e+00;QD=20.25;ReadPosRankSum=0.552;SOR=0.852;VQSLOD=-4.859e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,53:74:99:1587,0,481
chr2	96517882	rs62156871	G	A	1529.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DB;DP=134;ExcessHet=6.9897;FS=0.000;MQ=51.24;MQRankSum=-3.837e+00;NEGATIVE_TRAIN_SITE;QD=3.35;ReadPosRankSum=0.681;SOR=0.704;VQSLOD=-4.167e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,24:134:99:261,0,4202
chr2	96517883	rs137998003	T	G	227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=135;ExcessHet=3.0103;FS=1.871;MQ=50.91;MQRankSum=-1.775e+00;NEGATIVE_TRAIN_SITE;QD=1.68;ReadPosRankSum=-1.326e+00;SOR=0.963;VQSLOD=-3.791e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,23:135:99:236,0,4092
chr2	96517885	rs62156872	G	A	12030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=137;ExcessHet=6.9897;FS=6.717;MQ=51.21;MQRankSum=-8.577e+00;QD=26.44;ReadPosRankSum=-1.464e+00;SOR=0.647;VQSLOD=-2.809e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,100:137:99:3713,0,708
chr2	96517893	rs77129683	T	C	5081.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019e+00;DB;DP=140;ExcessHet=6.9897;FS=2.588;MQ=51.15;MQRankSum=-3.404e+00;NEGATIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.264;SOR=0.892;VQSLOD=-3.224e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,56:140:99:1489,0,3122
chr2	96517905	rs80041617	A	T	3999.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DB;DP=139;ExcessHet=6.9897;FS=3.475;MQ=51.43;MQRankSum=-3.464e+00;NEGATIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=1.47;SOR=0.996;VQSLOD=-3.182e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,53:139:99:1101,0,2921
chr2	96517960	rs76809881	T	A	2512.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=108;ExcessHet=6.9897;FS=4.714;MQ=53.39;MQRankSum=-3.679e+00;NEGATIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=0.646;SOR=0.972;VQSLOD=-2.615e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,27:108:99:561,0,2617
chr2	96518022	rs4907282	G	A	2520.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=41;ExcessHet=6.9897;FS=7.946;MQ=49.68;MQRankSum=-4.206e+00;NEGATIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=-1.031e+00;SOR=1.567;VQSLOD=-2.670e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:585,0,514
chr2	96518027	rs66656882	TA	T	116.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=49.75;MQRankSum=-2.856e+00;POSITIVE_TRAIN_SITE;QD=1.63;ReadPosRankSum=0.657;SOR=0.802;VQSLOD=1.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,3:30:13:13,0,1047
chr2	96518047	rs77501338	G	C	373.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=21;ExcessHet=6.9897;FS=1.449;MQ=53.79;MQRankSum=-4.352e+00;NEGATIVE_TRAIN_SITE;QD=6.23;ReadPosRankSum=-1.604e+00;SOR=0.336;VQSLOD=-4.041e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:144,0,406
chr2	96518063	rs74877636	T	A	162.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=15;ExcessHet=3.9794;FS=5.296;MQ=55.19;MQRankSum=-3.041e+00;NEGATIVE_TRAIN_SITE;QD=4.93;ReadPosRankSum=1.28;SOR=0.114;VQSLOD=-2.199e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,2:15:45:0|1:96518063_T_A:45,0,455:96518063
chr2	96518073	rs74595582	T	G	138.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=11;ExcessHet=3.9794;FS=3.112;MQ=55.79;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=5.33;ReadPosRankSum=0.447;SOR=0.132;VQSLOD=-2.813e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:57:0|1:96518063_T_A:57,0,372:96518063
chr2	96518083	rs74744155	G	T	150.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116e+00;DB;DP=8;ExcessHet=4.7712;FS=3.859;MQ=54.99;MQRankSum=-2.100e+00;NEGATIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=-3.190e-01;SOR=0.083;VQSLOD=-2.161e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:96518063_T_A:66,0,246:96518063
chr2	96518086	rs75262643	G	A	153.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=8;ExcessHet=4.7712;FS=6.021;MQ=54.47;MQRankSum=-2.100e+00;NEGATIVE_TRAIN_SITE;QD=7.68;ReadPosRankSum=-3.190e-01;SOR=0.024;VQSLOD=-1.592e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:96518063_T_A:66,0,246:96518063
chr2	96519386	.	C	G	149.13	PASS	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=0.4576;FS=0.000;MQ=39.89;QD=29.83;SOR=1.981;VQSLOD=-4.501e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:166,15,0
chr2	96519436	rs200500766	T	C	130.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=19;ExcessHet=3.9794;FS=2.316;MQ=49.99;MQRankSum=-2.433e+00;NEGATIVE_TRAIN_SITE;QD=3.03;ReadPosRankSum=-5.240e-01;SOR=1.314;VQSLOD=-3.232e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,3:19:78:0|1:96519436_T_C:78,0,663:96519436
chr2	96519437	rs201910712	G	A	121.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.600e-01;DB;DP=19;ExcessHet=3.9794;FS=2.316;MQ=49.99;MQRankSum=-2.433e+00;NEGATIVE_TRAIN_SITE;QD=2.82;ReadPosRankSum=-5.240e-01;SOR=1.314;VQSLOD=-3.247e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,3:19:69:0|1:96519436_T_C:69,0,745:96519436
chr2	96519447	rs201455039	G	T	191.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DB;DP=27;ExcessHet=6.9897;FS=9.409;MQ=51.45;MQRankSum=-2.898e+00;NEGATIVE_TRAIN_SITE;QD=2.06;ReadPosRankSum=-3.760e-01;SOR=2.588;VQSLOD=-4.381e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,3:27:54:0|1:96519436_T_C:54,0,870:96519436
chr2	96519500	rs78607440	C	T	1023.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=63;ExcessHet=6.9897;FS=12.883;MQ=54.43;MQRankSum=-5.361e+00;QD=5.45;ReadPosRankSum=0.500;SOR=1.815;VQSLOD=-4.240e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,9:63:99:114,0,1428
chr2	96519520	rs79910693	G	A	1278.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;DB;DP=67;ExcessHet=6.9897;FS=14.085;MQ=54.72;MQRankSum=-6.463e+00;QD=6.18;ReadPosRankSum=0.458;SOR=1.722;VQSLOD=-4.722e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:57,10:67:99:141,0,1485
chr2	96519692	rs200124811	G	A	724.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=47.28;MQRankSum=-3.007e+00;QD=10.36;ReadPosRankSum=0.548;SOR=0.655;VQSLOD=-3.683e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,6:26:99:130,0,654
chr2	96519717	rs200079787	C	T	629.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.570e-01;DB;DP=15;ExcessHet=6.9897;FS=3.014;MQ=43.49;MQRankSum=-2.019e+00;QD=12.35;ReadPosRankSum=1.62;SOR=1.956;VQSLOD=-3.797e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,2:15:39:39,0,450
chr2	96520971	rs62156905	A	G	203.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=16;ExcessHet=6.9897;FS=2.448;MQ=47.48;MQRankSum=-2.589e+00;QD=3.34;ReadPosRankSum=0.874;SOR=1.230;VQSLOD=-3.584e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,3:16:62:62,0,400
chr2	96521154	rs77972623	C	G	2643.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=288;ExcessHet=6.9897;FS=4.866;MQ=48.70;MQRankSum=-3.862e+00;QD=2.91;ReadPosRankSum=-8.160e-01;SOR=1.172;VQSLOD=-3.162e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:246,42:288:99:428,0,8013
chr2	96521220	rs5005870	G	A	12891.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774e+00;DB;DP=556;ExcessHet=6.9897;FS=1.176;MQ=44.53;MQRankSum=-6.424e+00;QD=8.11;ReadPosRankSum=0.608;SOR=0.821;VQSLOD=-5.066e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:320,236:556:99:5261,0,8478
chr2	96521418	rs76822280	G	A	1919.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.981e+00;DB;DP=337;ExcessHet=6.9897;FS=2.691;MQ=47.72;MQRankSum=-5.723e+00;QD=1.75;ReadPosRankSum=-1.216e+00;SOR=1.036;VQSLOD=-4.602e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:294,43:337:99:244,0,10351
chr2	96521548	rs112058478	G	A	6104.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.230e-01;DB;DP=342;ExcessHet=3.9794;FS=20.633;MQ=59.25;MQRankSum=-4.444e+00;NEGATIVE_TRAIN_SITE;QD=8.50;ReadPosRankSum=0.995;SOR=1.038;VQSLOD=-3.922e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:238,104:342:99:0|1:96521548_G_A:3637,0,9907:96521548
chr2	96521552	rs371779228	C	T	4550.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439e+00;DB;DP=349;ExcessHet=3.9794;FS=3.143;MQ=59.28;MQRankSum=0.900;NEGATIVE_TRAIN_SITE;QD=6.29;ReadPosRankSum=1.49;SOR=0.467;VQSLOD=-1.567e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:259,90:349:99:2939,0,10936
chr2	96521556	rs77601294	T	C	6321.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=366;ExcessHet=3.9794;FS=18.161;MQ=59.33;MQRankSum=-4.989e+00;NEGATIVE_TRAIN_SITE;QD=8.41;ReadPosRankSum=-3.440e-01;SOR=0.968;VQSLOD=-3.651e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:253,113:366:99:0|1:96521548_G_A:3780,0,10127:96521548
chr2	96521607	rs77216432	G	C	9623.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.05;DB;DP=416;ExcessHet=6.9897;FS=8.889;MQ=59.61;MQRankSum=-4.282e+00;NEGATIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=-7.100e-02;SOR=0.984;VQSLOD=-2.662e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:317,99:416:99:0|1:96521607_G_C:3175,0,13805:96521607
chr2	96521608	rs79873536	G	A	9623.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.881e+00;DB;DP=419;ExcessHet=6.9897;FS=8.903;MQ=59.61;MQRankSum=-4.275e+00;NEGATIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=-3.490e-01;SOR=0.958;VQSLOD=-2.652e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:321,98:419:99:0|1:96521607_G_C:3175,0,13805:96521607
chr2	96521609	rs77089740	T	C	9623.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=418;ExcessHet=6.9897;FS=8.817;MQ=59.63;MQRankSum=-4.261e+00;NEGATIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=-6.610e-01;SOR=0.953;VQSLOD=-2.652e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:321,97:418:99:0|1:96521607_G_C:3175,0,13805:96521607
chr2	96521640	rs78178577	C	T	3275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e-01;DB;DP=392;ExcessHet=6.9897;FS=0.788;MQ=59.70;MQRankSum=0.362;NEGATIVE_TRAIN_SITE;QD=2.65;ReadPosRankSum=-1.065e+00;SOR=0.848;VQSLOD=-1.474e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:336,56:392:99:888,0,8898
chr2	96521641	.	G	A	2667.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.690e-01;DP=388;ExcessHet=6.9897;FS=0.000;MQ=59.70;MQRankSum=0.364;NEGATIVE_TRAIN_SITE;QD=2.18;ReadPosRankSum=-1.456e+00;SOR=0.750;VQSLOD=-1.525e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:332,56:388:99:883,0,13973
chr2	96521665	rs199945797	A	G	935.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=347;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;QD=1.21;ReadPosRankSum=-2.940e+00;SOR=0.587;VQSLOD=2.08;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:306,41:347:99:0|1:96521665_A_G:723,0,13252:96521665
chr2	96521669	rs200905909	C	T	878.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=340;ExcessHet=3.9794;FS=0.999;MQ=59.90;MQRankSum=0.00;QD=1.16;ReadPosRankSum=-3.578e+00;SOR=0.571;VQSLOD=1.34;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:303,37:340:99:0|1:96521665_A_G:684,0,13300:96521665
chr2	96521671	rs202242743	G	C	705.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=337;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;QD=0.93;ReadPosRankSum=-3.369e+00;SOR=0.502;VQSLOD=1.58;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:300,37:337:99:0|1:96521665_A_G:590,0,13249:96521665
chr2	96521862	rs200835769	T	A	713.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=50;ExcessHet=6.9897;FS=3.861;MQ=42.53;MQRankSum=2.11;QD=3.55;ReadPosRankSum=1.31;SOR=0.403;VQSLOD=-4.593e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,5:50:64:64,0,1439
chr2	96523006	rs12717776	A	C	2368.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=54.90;MQRankSum=-9.050e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.69;ReadPosRankSum=-1.044e+00;SOR=0.589;VQSLOD=-1.450e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:45:1|1:96523006_A_C:639,45,0:96523006
chr2	96523009	rs12717777	A	C	2368.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.11;DB;DP=15;ExcessHet=3.0103;FS=1.437;MQ=54.12;MQRankSum=-9.050e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.33;ReadPosRankSum=-1.093e+00;SOR=0.481;VQSLOD=-1.483e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:96523006_A_C:639,45,0:96523006
chr2	96523047	rs12717778	A	G	2317.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.735;DB;DP=24;ExcessHet=3.0103;FS=1.044;MQ=49.39;MQRankSum=-8.950e-01;QD=22.72;ReadPosRankSum=1.04;SOR=1.011;VQSLOD=-2.961e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:702,72,0
chr2	96523096	rs10211258	T	C	2222.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=44.80;QD=29.25;SOR=0.920;VQSLOD=-4.098e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:839,87,0
chr2	96525839	rs75012806	A	G	123.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=25;ExcessHet=6.9897;FS=4.555;MQ=57.70;MQRankSum=-4.930e+00;NEGATIVE_TRAIN_SITE;QD=1.20;ReadPosRankSum=0.773;SOR=1.659;VQSLOD=-3.645e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,2:25:9:9,0,1306
chr2	96525871	rs75993187	T	C	124.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=56.80;MQRankSum=-3.598e+00;NEGATIVE_TRAIN_SITE;QD=2.19;ReadPosRankSum=-1.701e+00;SOR=0.097;VQSLOD=-3.597e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:56:56,0,317
chr2	96563161	rs201291334	C	A	801.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405e+00;DB;DP=63;ExcessHet=3.0103;FS=0.955;MQ=50.96;MQRankSum=0.602;NEGATIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-2.138e+00;SOR=0.869;VQSLOD=-3.767e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,35:63:99:810,0,688
chr2	96593189	rs77375837	C	T	778.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.965e+00;DB;DP=50;ExcessHet=6.9897;FS=12.352;MQ=54.07;MQRankSum=-6.258e+00;QD=5.64;ReadPosRankSum=0.130;SOR=0.405;VQSLOD=-3.788e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,18:50:99:382,0,947
chr2	96593196	rs147780629	A	G	75.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144e+00;DB;DP=45;ExcessHet=3.0103;FS=1.542;MQ=54.60;MQRankSum=-2.536e+00;NEGATIVE_TRAIN_SITE;QD=1.67;ReadPosRankSum=2.11;SOR=0.403;VQSLOD=-4.235e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,5:45:84:84,0,1741
chr2	96593216	rs114318519	C	T	984.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.149e+00;DB;DP=41;ExcessHet=6.9897;FS=8.478;MQ=53.35;MQRankSum=-5.003e+00;NEGATIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=1.17;SOR=0.242;VQSLOD=-2.768e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,10:41:99:356,0,1183
chr2	96593224	rs116567099	A	C	1528.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486e+00;DB;DP=37;ExcessHet=6.9897;FS=9.810;MQ=52.72;MQRankSum=-5.731e+00;QD=13.41;ReadPosRankSum=2.07;SOR=0.229;VQSLOD=-3.174e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,17:37:99:0|1:96593224_A_C:651,0,867:96593224
chr2	96593232	rs76329181	G	T	1507.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.661e+00;DB;DP=34;ExcessHet=6.9897;FS=14.999;MQ=52.36;MQRankSum=-5.403e+00;QD=14.23;ReadPosRankSum=1.26;SOR=0.146;VQSLOD=-3.554e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,17:34:99:0|1:96593224_A_C:660,0,741:96593224
chr2	96593233	rs75205385	C	T	1510.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=34;ExcessHet=6.9897;FS=14.828;MQ=52.28;MQRankSum=-5.403e+00;QD=14.39;ReadPosRankSum=1.35;SOR=0.151;VQSLOD=-3.549e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,17:34:99:0|1:96593224_A_C:660,0,741:96593224
chr2	96593239	rs79688051	A	G	1486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.729e+00;DB;DP=31;ExcessHet=6.9897;FS=16.143;MQ=52.06;MQRankSum=-5.231e+00;QD=15.02;ReadPosRankSum=0.937;SOR=0.123;VQSLOD=-3.650e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,16:31:99:0|1:96593224_A_C:627,0,618:96593224
chr2	96593242	rs78846702	A	G	1498.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.599e+00;DB;DP=30;ExcessHet=6.9897;FS=14.299;MQ=51.90;MQRankSum=-5.051e+00;QD=15.95;ReadPosRankSum=1.05;SOR=0.133;VQSLOD=-3.265e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,16:30:99:0|1:96593224_A_C:627,0,618:96593224
chr2	96593257	rs76305218	T	C	1370.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768e+00;DB;DP=30;ExcessHet=6.9897;FS=15.966;MQ=51.22;MQRankSum=-4.872e+00;NEGATIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.995;SOR=0.094;VQSLOD=-3.647e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,16:30:99:0|1:96593224_A_C:630,0,576:96593224
chr2	96593280	rs77390827	T	C	1507.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;DB;DP=29;ExcessHet=6.9897;FS=8.198;MQ=50.68;MQRankSum=-4.276e+00;NEGATIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=0.00;SOR=0.177;VQSLOD=-2.069e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,16:29:99:0|1:96593224_A_C:612,0,534:96593224
chr2	96594560	rs75021278	G	T	86.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=51.18;MQRankSum=-2.100e+00;NEGATIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=1.47;SOR=0.283;VQSLOD=-3.153e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:30,3,0
chr2	96594581	rs78273429	T	G	194.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=51.62;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.980;SOR=1.002;VQSLOD=-3.084e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr2	96594626	rs72492175	C	T	239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=6.9897;FS=19.012;MQ=54.49;MQRankSum=-3.195e+00;NEGATIVE_TRAIN_SITE;QD=7.50;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=-3.847e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:75,0,29
chr2	96594648	rs75444333	A	G	469.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=6.9897;FS=8.140;MQ=55.91;MQRankSum=-3.765e+00;NEGATIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.526;SOR=0.124;VQSLOD=-2.085e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,153
chr2	96594697	rs72931795	G	C	651.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e-01;DB;DP=15;ExcessHet=6.9897;FS=2.437;MQ=55.52;MQRankSum=-5.144e+00;QD=7.85;ReadPosRankSum=-3.810e-01;SOR=0.359;VQSLOD=-4.110e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,2:15:24:24,0,410
chr2	96594723	rs78476446	A	G	754.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294e+00;DB;DP=24;ExcessHet=6.9897;FS=2.427;MQ=56.54;MQRankSum=-6.101e+00;QD=6.74;ReadPosRankSum=1.14;SOR=0.375;VQSLOD=-4.726e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,3:24:53:53,0,702
chr2	96594735	rs75927751	C	T	735.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=56.73;MQRankSum=-6.495e+00;QD=5.93;ReadPosRankSum=1.25;SOR=0.558;VQSLOD=-5.051e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,3:27:54:0|1:96594735_C_T:54,0,999:96594735
chr2	96594742	rs75729585	C	T	788.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=32;ExcessHet=6.9897;FS=3.931;MQ=56.91;MQRankSum=-6.608e+00;QD=6.07;ReadPosRankSum=0.892;SOR=1.244;VQSLOD=-4.592e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,3:32:39:0|1:96594735_C_T:39,0,1153:96594735
chr2	96594958	rs112265071	G	A	2095.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.350e-01;DB;DP=92;ExcessHet=6.9897;FS=10.766;MQ=41.04;MQRankSum=-2.707e+00;QD=6.99;ReadPosRankSum=0.475;SOR=0.349;VQSLOD=-4.919e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,36:92:99:725,0,2091
chr2	96595032	rs200034240	A	T	3728.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DB;DP=62;ExcessHet=6.9897;FS=7.990;MQ=41.24;MQRankSum=-3.369e+00;QD=17.84;ReadPosRankSum=1.26;SOR=0.324;VQSLOD=-4.098e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,37:62:99:1032,0,672
chr2	96601123	rs199554027	G	A	253.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=41.50;MQRankSum=-2.198e+00;QD=7.47;ReadPosRankSum=-2.218e+00;SOR=0.277;VQSLOD=-4.994e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:81:81,0,319
chr2	96601240	rs199988716	G	A	5394.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417e+00;DB;DP=111;ExcessHet=6.9897;FS=2.019;MQ=39.25;MQRankSum=-4.846e+00;QD=16.25;ReadPosRankSum=-1.080e-01;SOR=0.835;VQSLOD=-5.034e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,71:111:99:1814,0,997
chr2	96601312	rs201144574	G	A	4346.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.106e+00;DB;DP=151;ExcessHet=6.9897;FS=0.000;MQ=42.28;MQRankSum=-5.843e+00;QD=8.75;ReadPosRankSum=-5.790e-01;SOR=0.709;VQSLOD=-4.971e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,71:151:99:1335,0,1966
chr2	96601345	rs149389865	T	C	4389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.162e+00;DB;DP=121;ExcessHet=6.9897;FS=8.487;MQ=42.42;MQRankSum=-6.202e+00;QD=12.33;ReadPosRankSum=0.044;SOR=1.121;VQSLOD=-5.115e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,55:121:99:1320,0,1036
chr2	96601489	.	G	A	901.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DP=31;ExcessHet=6.9897;FS=11.947;MQ=43.60;MQRankSum=-2.245e+00;QD=10.13;ReadPosRankSum=-1.220e+00;SOR=0.126;VQSLOD=-4.299e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,8:31:99:0|1:96601489_G_A:288,0,913:96601489
chr2	96601491	.	A	G	901.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DP=32;ExcessHet=6.9897;FS=9.107;MQ=43.59;MQRankSum=-2.455e+00;QD=10.13;ReadPosRankSum=-1.631e+00;SOR=0.191;VQSLOD=-3.723e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,9:32:99:0|1:96601489_G_A:288,0,913:96601489
chr2	96601513	rs79147644	C	T	798.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994e+00;DB;DP=25;ExcessHet=6.9897;FS=4.602;MQ=44.59;MQRankSum=-2.445e+00;QD=11.10;ReadPosRankSum=-3.830e-01;SOR=0.264;VQSLOD=-2.657e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:262,0,544
chr2	96601547	rs76106066	A	T	1129.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=44.70;MQRankSum=-2.885e+00;QD=20.54;ReadPosRankSum=1.89;SOR=0.804;VQSLOD=-3.869e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,8:13:99:0|1:96601547_A_T:321,0,184:96601547
chr2	96601571	rs79826646	A	G	1052.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=44.54;MQRankSum=-3.365e+00;QD=22.40;SOR=1.132;VQSLOD=-3.605e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:41:310,0,41
chr2	96601647	rs78222202	T	C	545.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.09;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=42.15;MQRankSum=-2.369e+00;QD=23.73;ReadPosRankSum=0.163;SOR=1.708;VQSLOD=-3.365e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr2	96604345	rs200381926	T	C	283.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=9;ExcessHet=4.7712;FS=0.000;MQ=50.95;MQRankSum=-2.515e+00;NEGATIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-8.190e-01;SOR=0.368;VQSLOD=-2.990e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:96604345_T_C:153,0,198:96604345
chr2	96604347	rs201195012	A	G	283.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=9;ExcessHet=4.7712;FS=0.000;MQ=51.35;MQRankSum=-2.655e+00;NEGATIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-8.190e-01;SOR=0.392;VQSLOD=-3.078e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:96604345_T_C:153,0,198:96604345
chr2	96604390	rs151015608	C	T	1463.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=47.81;MQRankSum=-3.723e+00;QD=24.40;ReadPosRankSum=-7.050e-01;SOR=0.986;VQSLOD=-3.217e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,15:22:99:0|1:96604390_C_T:705,0,240:96604390
chr2	96604391	rs145784647	A	G	1463.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=47.06;MQRankSum=-3.841e+00;QD=22.87;ReadPosRankSum=-1.116e+00;SOR=1.127;VQSLOD=-3.272e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,18:25:99:0|1:96604390_C_T:705,0,240:96604390
chr2	96604420	rs74931694	A	T	2805.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.694e+00;DB;DP=39;ExcessHet=6.9897;FS=0.000;MQ=45.71;MQRankSum=-4.599e+00;QD=22.81;ReadPosRankSum=-1.559e+00;SOR=1.831;VQSLOD=-2.721e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,32:39:99:1071,0,184
chr2	96604473	rs75003856	T	A	772.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.76;DB;DP=118;ExcessHet=6.9897;FS=14.539;MQ=53.64;MQRankSum=-1.674e+00;NEGATIVE_TRAIN_SITE;QD=2.18;ReadPosRankSum=-6.720e-01;SOR=3.200;VQSLOD=-5.219e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,11:118:99:104,0,3474
chr2	96604516	rs62154560	C	T	15987.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=222;ExcessHet=6.9897;FS=0.772;MQ=51.67;MQRankSum=-7.575e+00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=-2.260e-01;SOR=0.800;VQSLOD=-3.242e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,179:222:99:5236,0,639
chr2	96604679	rs62154563	C	T	16751.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163e+00;DB;DP=280;ExcessHet=6.9897;FS=9.366;MQ=49.31;MQRankSum=-8.908e+00;QD=19.99;ReadPosRankSum=-2.839e+00;SOR=1.407;VQSLOD=-4.435e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,202:280:99:5686,0,1771
chr2	96604785	rs201789317	T	A	2639.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=35;ExcessHet=6.9897;FS=0.000;MQ=38.21;MQRankSum=-2.904e+00;QD=23.16;ReadPosRankSum=0.122;SOR=1.469;VQSLOD=-4.789e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:755,0,480
chr2	96604799	rs200229515	T	G	2030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=38.06;MQRankSum=-2.772e+00;QD=21.61;ReadPosRankSum=0.346;SOR=1.265;VQSLOD=-5.070e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:495,0,452
chr2	96604858	rs201867826	G	C	897.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=40.21;MQRankSum=-2.422e+00;QD=20.41;ReadPosRankSum=-7.370e-01;SOR=1.105;VQSLOD=-4.756e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:90:260,0,90
chr2	96605505	rs76531677	G	A	231.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=4;ExcessHet=6.9897;FS=9.108;MQ=59.10;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.28;SOR=0.023;VQSLOD=-1.575e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:73:75,0,73
chr2	96605758	rs201565838	A	C	31.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=34;ExcessHet=3.9794;FS=4.052;MQ=48.47;MQRankSum=-2.023e+00;QD=0.41;ReadPosRankSum=-4.400e-01;SOR=1.721;VQSLOD=-3.146e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,3:34:33:0|1:96605758_A_C:33,0,1798:96605758
chr2	96605759	rs199768300	C	T	31.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=33;ExcessHet=3.9794;FS=4.067;MQ=48.58;MQRankSum=-2.187e+00;QD=0.42;ReadPosRankSum=-4.150e-01;SOR=1.761;VQSLOD=-3.196e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,3:33:33:0|1:96605758_A_C:33,0,1798:96605758
chr2	96606944	rs78739183	C	T	599.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830e-01;DB;DP=15;ExcessHet=6.9897;FS=1.024;MQ=54.82;MQRankSum=-1.533e+00;NEGATIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.919;SOR=0.859;VQSLOD=-3.169e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:78:78,0,308
chr2	96606985	rs79451673	T	C	905.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=17;ExcessHet=6.9897;FS=2.083;MQ=55.64;MQRankSum=-1.587e+00;NEGATIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.241e+00;SOR=1.051;VQSLOD=-2.753e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,5:17:99:0|1:96606985_T_C:154,0,614:96606985
chr2	96606998	rs201633069	C	T	864.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=15;ExcessHet=6.9897;FS=7.417;MQ=55.56;MQRankSum=-1.776e+00;NEGATIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.00;SOR=1.707;VQSLOD=-1.763e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,4:15:99:0|1:96606985_T_C:154,0,617:96606985
chr2	96607003	.	G	A	740.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DP=14;ExcessHet=6.9897;FS=10.415;MQ=55.29;MQRankSum=-2.171e+00;NEGATIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.604;SOR=2.089;VQSLOD=-2.419e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,3:14:93:0|1:96606985_T_C:93,0,590:96606985
chr2	96610420	rs78473403	G	T	4333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769e+00;DB;DP=117;ExcessHet=6.9897;FS=7.818;MQ=57.51;MQRankSum=-9.828e+00;QD=13.46;ReadPosRankSum=0.807;SOR=0.641;VQSLOD=-4.759e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,59:117:99:0|1:96610395_C_CA:2282,0,2258:96610395
chr2	96610455	.	C	A	1880.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964e+00;DP=100;ExcessHet=6.9897;FS=1.657;MQ=57.47;MQRankSum=-8.300e+00;QD=6.72;ReadPosRankSum=-1.231e+00;SOR=0.584;VQSLOD=-5.171e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,40:100:99:0|1:96610455_C_A:1220,0,2327:96610455
chr2	96610525	rs79583286	G	A	255.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=56.90;MQRankSum=-5.613e+00;QD=1.74;ReadPosRankSum=-5.760e-01;SOR=0.684;VQSLOD=-4.328e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,4:40:57:0|1:96610525_G_A:57,0,1481:96610525
chr2	96610540	rs371461424	G	C	309.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=38;ExcessHet=6.9897;FS=0.000;MQ=56.41;MQRankSum=-5.100e+00;QD=2.14;ReadPosRankSum=-5.990e-01;SOR=0.571;VQSLOD=-4.456e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,4:38:66:0|1:96610525_G_A:66,0,1416:96610525
chr2	96610544	rs375876591	G	T	324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DB;DP=38;ExcessHet=6.9897;FS=1.045;MQ=56.36;MQRankSum=-5.100e+00;QD=2.27;ReadPosRankSum=-4.760e-01;SOR=0.502;VQSLOD=-4.432e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,4:38:66:0|1:96610525_G_A:66,0,1416:96610525
chr2	96610546	rs367956544	G	T	324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DB;DP=37;ExcessHet=6.9897;FS=2.357;MQ=56.22;MQRankSum=-5.001e+00;NEGATIVE_TRAIN_SITE;QD=2.35;ReadPosRankSum=-6.120e-01;SOR=0.408;VQSLOD=-4.438e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,4:37:66:0|1:96610525_G_A:66,0,1416:96610525
chr2	96610552	rs11897663	G	C	447.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=30;ExcessHet=6.9897;FS=3.962;MQ=55.41;MQRankSum=-4.747e+00;NEGATIVE_TRAIN_SITE;QD=3.64;ReadPosRankSum=-1.007e+00;SOR=0.294;VQSLOD=-3.520e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,4:30:78:0|1:96610525_G_A:78,0,1248:96610525
chr2	96610569	rs372181262	T	A	454.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=26;ExcessHet=6.9897;FS=4.088;MQ=54.86;MQRankSum=-4.383e+00;NEGATIVE_TRAIN_SITE;QD=4.06;ReadPosRankSum=0.857;SOR=0.271;VQSLOD=-3.358e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,3:26:57:0|1:96610525_G_A:57,0,957:96610525
chr2	96610836	rs11893977	T	C	21537.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=267;ExcessHet=6.9897;FS=4.377;MQ=55.94;MQRankSum=-5.491e+00;QD=26.23;ReadPosRankSum=-6.430e-01;SOR=1.081;VQSLOD=-2.394e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,193:267:99:0|1:96610787_C_CA:6883,0,2131:96610787
chr2	96610899	rs62154593	T	C	43380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096e+00;DB;DP=486;ExcessHet=6.9897;FS=0.633;MQ=56.70;MQRankSum=-7.867e+00;QD=30.53;ReadPosRankSum=1.07;SOR=0.777;VQSLOD=-5.086e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:110,376:486:99:0|1:96610899_T_C:14858,0,3694:96610899
chr2	96610921	rs62154594	T	G	46512.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=525;ExcessHet=6.9897;FS=0.000;MQ=57.06;MQRankSum=-7.519e+00;QD=30.64;ReadPosRankSum=0.393;SOR=0.769;VQSLOD=-4.437e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:113,412:525:99:0|1:96610899_T_C:16071,0,3725:96610899
chr2	96610952	rs62154595	T	C	34859.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=497;ExcessHet=6.9897;FS=0.590;MQ=55.85;MQRankSum=0.089;NEGATIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=1.73;SOR=0.659;VQSLOD=-2.661e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,368:497:99:11792,0,2935
chr2	96610958	rs79852024	G	T	4992.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.880e-01;DB;DP=484;ExcessHet=6.9897;FS=0.647;MQ=55.36;MQRankSum=-8.600e-02;NEGATIVE_TRAIN_SITE;QD=3.58;ReadPosRankSum=0.332;SOR=0.794;VQSLOD=-3.384e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:372,112:484:99:2025,0,12926
chr2	96611110	rs147261189	T	G	586.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=81;ExcessHet=6.9897;FS=0.000;MQ=44.00;MQRankSum=0.515;QD=2.13;ReadPosRankSum=3.82;SOR=0.519;VQSLOD=-5.239e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:71,10:81:99:0|1:96611089_G_C:203,0,2993:96611089
chr2	96611120	rs200202861	C	T	685.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519e+00;DB;DP=71;ExcessHet=6.9897;FS=0.000;MQ=44.86;MQRankSum=0.243;QD=2.87;ReadPosRankSum=2.93;SOR=0.208;VQSLOD=-4.366e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,10:71:99:0|1:96611089_G_C:233,0,2573:96611089
chr2	96611145	.	C	A	159.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DP=44;ExcessHet=3.9794;FS=0.000;MQ=47.77;MQRankSum=0.00;QD=1.42;ReadPosRankSum=0.356;SOR=0.012;VQSLOD=-3.384e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,4:44:29:29,0,1484
chr2	96611146	rs149738552	A	G	3802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.175e+00;DB;DP=42;ExcessHet=6.9897;FS=0.000;MQ=47.90;MQRankSum=-3.240e-01;QD=22.50;ReadPosRankSum=-1.259e+00;SOR=1.227;VQSLOD=-3.209e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,25:42:99:903,0,585
chr2	96614212	rs4907288	A	G	636.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=58.64;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=-7.060e-01;SOR=1.609;VQSLOD=0.370;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:65:191,0,65
chr2	96614313	rs202176708	C	G	590.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=32;ExcessHet=6.9897;FS=7.191;MQ=59.56;MQRankSum=-2.488e+00;NEGATIVE_TRAIN_SITE;QD=3.89;ReadPosRankSum=-2.726e+00;SOR=1.644;VQSLOD=-2.987e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,4:32:99:0|1:96614313_C_G:126,0,1140:96614313
chr2	96614322	.	A	C	935.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DP=40;ExcessHet=6.9897;FS=15.299;MQ=59.51;MQRankSum=-2.141e+00;NEGATIVE_TRAIN_SITE;QD=5.47;ReadPosRankSum=-2.803e+00;SOR=2.242;VQSLOD=-3.796e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,9:40:99:0|1:96614313_C_G:312,0,1461:96614313
chr2	96614325	.	G	T	1020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.10;DP=47;ExcessHet=6.9897;FS=19.454;MQ=59.52;MQRankSum=-2.062e+00;NEGATIVE_TRAIN_SITE;QD=5.80;ReadPosRankSum=-2.041e+00;SOR=2.506;VQSLOD=-4.245e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,10:47:99:0|1:96614313_C_G:351,0,1521:96614313
chr2	96614326	.	G	A	1062.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DP=48;ExcessHet=6.9897;FS=21.628;MQ=59.53;MQRankSum=-2.062e+00;NEGATIVE_TRAIN_SITE;QD=6.01;ReadPosRankSum=-2.380e+00;SOR=2.566;VQSLOD=-4.796e+00;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,11:48:99:0|1:96614313_C_G:390,0,1518:96614313
chr2	96614339	rs200412293	A	C	1376.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=59;ExcessHet=6.9897;FS=8.737;MQ=59.60;MQRankSum=-1.837e+00;NEGATIVE_TRAIN_SITE;QD=6.65;ReadPosRankSum=-2.668e+00;SOR=1.325;VQSLOD=-2.583e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,18:59:99:0|1:96614313_C_G:514,0,1621:96614313
chr2	96614366	rs77087088	A	C	3695.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220e-01;DB;DP=79;ExcessHet=6.9897;FS=9.970;MQ=59.40;MQRankSum=-2.003e+00;NEGATIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-1.304e+00;SOR=1.206;VQSLOD=-1.841e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,34:79:99:0|1:96614366_A_C:1292,0,1776:96614366
chr2	96614383	rs74839781	A	G	4221.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e+00;DB;DP=87;ExcessHet=6.9897;FS=9.147;MQ=59.44;MQRankSum=-1.932e+00;NEGATIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.672;SOR=1.011;VQSLOD=-1.650e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,36:87:99:0|1:96614366_A_C:1318,0,1918:96614366
chr2	96614407	rs77346146	G	A	4819.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316e+00;DB;DP=93;ExcessHet=6.9897;FS=15.704;MQ=59.50;MQRankSum=-1.959e+00;NEGATIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=2.18;SOR=0.424;VQSLOD=-2.385e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,41:93:99:0|1:96614407_G_A:1565,0,2060:96614407
chr2	96614424	rs148880632	G	T	4915.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.109e+00;DB;DP=88;ExcessHet=6.9897;FS=19.114;MQ=59.46;MQRankSum=-1.863e+00;NEGATIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=1.90;SOR=0.294;VQSLOD=-2.674e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,41:88:99:0|1:96614407_G_A:1577,0,1892:96614407
chr2	96614438	rs113916465	C	A	4837.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.928e+00;DB;DP=86;ExcessHet=6.9897;FS=20.511;MQ=59.48;MQRankSum=-1.780e+00;NEGATIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=1.51;SOR=0.239;VQSLOD=-2.765e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,42:86:99:0|1:96614407_G_A:1601,0,1715:96614407
chr2	96614520	rs112706144	A	G	894.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.670e-01;DB;DP=25;ExcessHet=6.9897;FS=2.597;MQ=59.15;MQRankSum=-1.770e-01;NEGATIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-1.147e+00;SOR=1.112;VQSLOD=-1.834e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,10:25:99:298,0,404
chr2	96614553	.	T	C	389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DP=9;ExcessHet=6.9897;FS=0.000;MQ=57.54;MQRankSum=-4.310e-01;QD=13.45;ReadPosRankSum=-1.400e-01;SOR=0.336;VQSLOD=-1.365e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:96614553_T_C:198,0,153:96614553
chr2	96614554	.	G	T	389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DP=9;ExcessHet=6.9897;FS=0.000;MQ=57.45;MQRankSum=-3.190e-01;QD=13.93;ReadPosRankSum=-2.310e-01;SOR=0.368;VQSLOD=-1.414e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:96614553_T_C:198,0,153:96614553
chr2	96614559	rs111919290	T	C	361.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=57.25;MQRankSum=-3.190e-01;QD=13.92;ReadPosRankSum=-4.640e-01;SOR=0.350;VQSLOD=-1.640e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:96614553_T_C:201,0,111:96614553
chr2	96616243	rs62154608	G	C	1054.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=48.96;MQRankSum=-2.429e+00;QD=23.96;ReadPosRankSum=-1.254e+00;SOR=1.662;VQSLOD=-2.109e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:10:293,0,10
chr2	96616310	rs139114553	C	T	543.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306e+00;DB;DP=32;ExcessHet=6.9897;FS=6.835;MQ=53.24;MQRankSum=-4.304e+00;NEGATIVE_TRAIN_SITE;QD=4.69;ReadPosRankSum=-8.000e-02;SOR=2.387;VQSLOD=-3.693e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,10:32:99:284,0,842
chr2	96616348	rs62154609	C	G	6763.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=69;ExcessHet=6.9897;FS=1.268;MQ=56.04;MQRankSum=-2.686e+00;NEGATIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=-7.060e-01;SOR=0.846;VQSLOD=-2.657e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,50:69:99:0|1:96616348_C_G:2110,0,720:96616348
chr2	96616353	rs150793442	GT	G	3915.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-01;DB;DP=75;ExcessHet=6.9897;FS=1.137;MQ=56.43;MQRankSum=-2.260e-01;QD=15.00;ReadPosRankSum=-3.330e-01;SOR=0.598;VQSLOD=0.688;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,33:75:99:0|1:96616353_GT_G:1127,0,1669:96616353
chr2	96616355	rs62154610	T	C	3915.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.680e-01;DB;DP=75;ExcessHet=6.9897;FS=1.130;MQ=56.49;MQRankSum=-2.260e-01;NEGATIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-4.400e-01;SOR=0.609;VQSLOD=-2.497e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,33:75:99:0|1:96616353_GT_G:1127,0,1669:96616353
chr2	96616361	rs1852833	A	C	810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=77;ExcessHet=6.9897;FS=5.142;MQ=56.86;MQRankSum=-2.435e+00;NEGATIVE_TRAIN_SITE;QD=2.86;ReadPosRankSum=-3.100e-02;SOR=1.275;VQSLOD=-2.340e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:66,11:77:99:0|1:96616361_A_C:260,0,2817:96616361
chr2	96616362	rs1636113	A	T	810.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;DB;DP=78;ExcessHet=6.9897;FS=6.418;MQ=56.90;MQRankSum=-2.480e+00;NEGATIVE_TRAIN_SITE;QD=2.83;ReadPosRankSum=6.000e-03;SOR=1.282;VQSLOD=-2.316e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,11:78:99:0|1:96616361_A_C:260,0,2817:96616361
chr2	96616378	rs62154611	C	T	9059.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=98;ExcessHet=6.9897;FS=2.864;MQ=57.65;MQRankSum=-2.591e+00;NEGATIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-1.792e+00;SOR=0.888;VQSLOD=-2.136e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,69:98:99:0|1:96616348_C_G:2569,0,905:96616348
chr2	96616442	rs74960926	C	A	13576.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181e+00;DB;DP=137;ExcessHet=6.9897;FS=1.932;MQ=57.95;MQRankSum=-5.460e-01;NEGATIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=2.84;SOR=0.873;VQSLOD=-1.979e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,95:137:99:0|1:96616442_C_A:3777,0,1859:96616442
chr2	96616448	rs76503749	G	T	13663.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DB;DP=140;ExcessHet=6.9897;FS=0.564;MQ=57.77;MQRankSum=0.202;NEGATIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=3.00;SOR=0.784;VQSLOD=-1.852e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,93:140:99:0|1:96616442_C_A:3783,0,1972:96616442
chr2	96616485	rs78218362	C	G	11099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464e+00;DB;DP=127;ExcessHet=6.9897;FS=1.181;MQ=57.14;MQRankSum=3.73;NEGATIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-4.340e-01;SOR=0.617;VQSLOD=-2.938e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,78:127:99:0|1:96616485_C_G:3015,0,1639:96616485
chr2	96616527	.	A	C	311.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DP=82;ExcessHet=6.9897;FS=12.192;MQ=56.07;MQRankSum=0.155;NEGATIVE_TRAIN_SITE;QD=1.01;ReadPosRankSum=-1.071e+00;SOR=1.849;VQSLOD=-2.955e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:75,7:82:25:25,0,2787
chr2	96616622	rs112338915	C	T	2225.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750e-01;DB;DP=19;ExcessHet=6.9897;FS=13.843;MQ=55.67;MQRankSum=5.33;QD=25.29;ReadPosRankSum=0.811;SOR=2.694;VQSLOD=-3.490e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,10:19:99:0|1:96616571_C_A:391,0,348:96616571
chr2	96616654	rs75283408	C	A	1477.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.547e+00;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=56.60;MQRankSum=3.48;NEGATIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=0.622;SOR=0.798;VQSLOD=-2.861e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,7:14:99:0|1:96616654_C_A:269,0,273:96616654
chr2	96616667	rs77249402	A	C	1321.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=57.00;MQRankSum=3.26;NEGATIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=0.544;SOR=0.813;VQSLOD=-2.611e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:96616654_C_A:234,0,234:96616654
chr2	96616690	rs111409549	T	C	1120.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=12;ExcessHet=6.9897;FS=1.868;MQ=57.92;MQRankSum=2.65;NEGATIVE_TRAIN_SITE;QD=29.50;ReadPosRankSum=-4.870e-01;SOR=0.396;VQSLOD=-2.152e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,7:12:99:0|1:96616654_C_A:279,0,189:96616654
chr2	96616693	rs112782601	C	A	1078.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249e+00;DB;DP=12;ExcessHet=6.9897;FS=1.905;MQ=57.90;MQRankSum=1.87;NEGATIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=0.079;SOR=0.342;VQSLOD=-1.767e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,7:12:99:0|1:96616654_C_A:279,0,189:96616654
chr2	96616734	rs112595286	A	C	427.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=58.90;MQRankSum=0.282;QD=16.46;ReadPosRankSum=-1.400e-01;SOR=0.512;VQSLOD=-4.277e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:29:0|1:96616734_A_C:121,0,29:96616734
chr2	96616758	rs79038786	T	C	689.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=58.86;MQRankSum=0.00;QD=30.85;ReadPosRankSum=0.746;SOR=0.593;VQSLOD=-7.230e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:96616734_A_C:163,12,0:96616734
chr2	96616839	rs76266192	G	T	507.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=1.984;MQ=57.78;MQRankSum=-1.150e+00;NEGATIVE_TRAIN_SITE;QD=30.12;ReadPosRankSum=1.15;SOR=0.223;VQSLOD=-1.804e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:33:0|1:96616839_G_T:123,0,33:96616839
chr2	96616851	rs79141867	A	T	445.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DB;DP=4;ExcessHet=3.9794;FS=7.521;MQ=57.94;MQRankSum=-5.890e-01;NEGATIVE_TRAIN_SITE;QD=34.24;ReadPosRankSum=1.59;SOR=0.082;VQSLOD=-2.005e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:33:0|1:96616839_G_T:123,0,33:96616839
chr2	96616852	rs77659567	A	C	445.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=7.521;MQ=57.94;MQRankSum=-5.890e-01;NEGATIVE_TRAIN_SITE;QD=34.24;ReadPosRankSum=1.59;SOR=0.082;VQSLOD=-2.005e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:33:0|1:96616839_G_T:123,0,33:96616839
chr2	96616865	rs79651658	G	A	400.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=5;ExcessHet=3.9794;FS=8.512;MQ=57.94;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=0.524;SOR=0.048;VQSLOD=-1.726e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:73:0|1:96616839_G_T:120,0,73:96616839
chr2	96616892	rs75665000	A	G	226.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=5;ExcessHet=3.9794;FS=8.817;MQ=58.29;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=0.598;SOR=0.052;VQSLOD=-1.501e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:75:0|1:96616892_A_G:120,0,75:96616892
chr2	96616894	rs79724781	G	A	226.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=5;ExcessHet=3.9794;FS=9.410;MQ=58.38;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=0.189;SOR=0.045;VQSLOD=-1.519e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:75:0|1:96616892_A_G:120,0,75:96616892
chr2	96616911	rs78624541	C	G	135.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=4;ExcessHet=3.9794;FS=10.414;MQ=57.53;MQRankSum=-8.870e-01;NEGATIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=-3.190e-01;SOR=0.012;VQSLOD=-1.599e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,1:4:33:0|1:96616892_A_G:33,0,123:96616892
chr2	96616913	rs75994251	C	T	135.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=10.414;MQ=57.53;MQRankSum=-8.870e-01;NEGATIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=-3.190e-01;SOR=0.012;VQSLOD=-1.599e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,1:4:33:0|1:96616892_A_G:33,0,123:96616892
chr2	96617029	.	G	GA	189.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DP=33;ExcessHet=6.9897;FS=2.026;MQ=58.90;MQRankSum=0.00;QD=2.16;ReadPosRankSum=0.247;SOR=1.018;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,5:33:15:15,0,488
chr2	96619612	rs143611798	C	T	1030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.967e+00;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=49.52;MQRankSum=-4.151e+00;NEGATIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.326e+00;SOR=0.437;VQSLOD=-3.645e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:381,0,397
chr2	96619641	rs200910276	A	C	3099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.539e+00;DB;DP=44;ExcessHet=6.9897;FS=6.731;MQ=47.91;MQRankSum=-5.571e+00;QD=21.09;ReadPosRankSum=-1.223e+00;SOR=2.627;VQSLOD=-3.948e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,30:44:99:0|1:96619641_A_C:1201,0,819:96619641
chr2	96619642	rs201891130	A	T	3099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;DB;DP=45;ExcessHet=6.9897;FS=9.855;MQ=48.22;MQRankSum=-5.690e+00;QD=20.95;ReadPosRankSum=-8.150e-01;SOR=3.118;VQSLOD=-4.943e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,30:45:99:0|1:96619641_A_C:1201,0,819:96619641
chr2	96619660	rs78395212	A	C	406.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.779e+00;DB;DP=70;ExcessHet=6.9897;FS=2.204;MQ=48.92;MQRankSum=-3.526e+00;QD=1.83;ReadPosRankSum=-4.020e-01;SOR=1.186;VQSLOD=-3.787e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,9:70:86:86,0,2601
chr2	96619688	rs74946480	T	G	6148.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.863e+00;DB;DP=130;ExcessHet=6.9897;FS=5.493;MQ=50.48;MQRankSum=-8.044e+00;QD=16.53;ReadPosRankSum=-1.262e+00;SOR=0.438;VQSLOD=-3.275e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,91:130:99:2375,0,1052
chr2	96619735	rs200095242	A	G	1644.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.790e-01;DB;DP=191;ExcessHet=6.9897;FS=1.520;MQ=53.32;MQRankSum=-1.944e+00;NEGATIVE_TRAIN_SITE;QD=2.91;ReadPosRankSum=0.027;SOR=0.502;VQSLOD=-3.621e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:139,52:191:99:861,0,4670
chr2	96619773	rs201932663	A	C	303.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642e+00;DB;DP=232;ExcessHet=3.0103;FS=0.672;MQ=53.50;MQRankSum=-4.522e+00;NEGATIVE_TRAIN_SITE;QD=1.31;ReadPosRankSum=-1.880e-01;SOR=0.807;VQSLOD=-4.600e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:195,37:232:99:311,0,7165
chr2	96619832	rs79037822	A	G	10755.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;DB;DP=206;ExcessHet=6.9897;FS=8.526;MQ=56.94;MQRankSum=-8.757e+00;QD=16.13;ReadPosRankSum=-9.680e-01;SOR=1.220;VQSLOD=-3.667e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:94,112:206:99:0|1:96619832_A_G:4328,0,3584:96619832
chr2	96619837	rs77007933	C	G	10853.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DB;DP=192;ExcessHet=6.9897;FS=6.296;MQ=57.11;MQRankSum=-8.405e+00;QD=16.70;ReadPosRankSum=-1.413e+00;SOR=1.175;VQSLOD=-3.467e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:92,100:192:99:0|1:96619832_A_G:4155,0,3577:96619832
chr2	96619838	rs79612785	A	C	10721.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=187;ExcessHet=6.9897;FS=6.296;MQ=57.09;MQRankSum=-8.359e+00;QD=16.75;ReadPosRankSum=-9.470e-01;SOR=1.148;VQSLOD=-3.453e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:92,95:187:99:0|1:96619832_A_G:4079,0,3583:96619832
chr2	96619853	rs201388512	T	C	4720.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.53;DB;DP=172;ExcessHet=6.9897;FS=7.697;MQ=56.86;MQRankSum=-4.529e+00;NEGATIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=-1.600e-02;SOR=1.299;VQSLOD=-2.641e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:118,54:172:99:1598,0,3314
chr2	96619873	rs111807008	C	A	4243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119e+00;DB;DP=158;ExcessHet=6.9897;FS=5.375;MQ=56.48;MQRankSum=-4.538e+00;NEGATIVE_TRAIN_SITE;QD=8.04;ReadPosRankSum=-6.110e-01;SOR=1.126;VQSLOD=-2.595e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:109,49:158:99:1402,0,3855
chr2	96619966	rs76258649	A	C	1272.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.93;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=54.02;MQRankSum=-5.306e+00;QD=12.24;ReadPosRankSum=-3.130e-01;SOR=0.781;VQSLOD=-4.079e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,13:33:99:0|1:96619966_A_C:481,0,1029:96619966
chr2	96619973	rs77716709	T	C	1151.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.42;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=52.89;MQRankSum=-5.026e+00;NEGATIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-1.200e-01;SOR=0.301;VQSLOD=-3.685e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,10:28:99:0|1:96619966_A_C:403,0,966:96619966
chr2	96620015	rs190414239	C	A	223.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=55.20;MQRankSum=-2.744e+00;NEGATIVE_TRAIN_SITE;QD=6.05;ReadPosRankSum=-9.670e-01;SOR=0.112;VQSLOD=-3.331e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:75:75,0,322
chr2	96626030	rs7566050	T	C	289.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=59.48;MQRankSum=0.431;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=-1.718e+00;SOR=0.693;VQSLOD=0.541;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	96626292	rs4362598	C	T	2612.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=42.63;QD=28.44;SOR=2.833;VQSLOD=-4.296e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:798,69,0
chr2	96647856	rs4144055	G	T	340.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.49;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-7.000e-01;SOR=0.336;VQSLOD=1.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:129,0,154
chr2	96684876	rs2579516	A	G	5244.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=59.57;POSITIVE_TRAIN_SITE;QD=28.98;SOR=0.749;VQSLOD=3.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1704,180,0
chr2	96687426	rs58846461	CT	C	6924.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.817e+00;DB;DP=57;ExcessHet=3.0103;FS=2.493;MQ=43.16;MQRankSum=-1.147e+00;QD=33.95;ReadPosRankSum=0.150;SOR=0.981;VQSLOD=0.010;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,57:57:99:1|1:96687426_CT_C:2536,172,0:96687426
chr2	96687428	rs59812668	GC	G	6924.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.762e+00;DB;DP=57;ExcessHet=3.0103;FS=2.548;MQ=42.24;MQRankSum=-8.080e-01;QD=33.95;ReadPosRankSum=-1.090e-01;SOR=1.043;VQSLOD=-3.900e-03;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,57:57:99:1|1:96687426_CT_C:2536,172,0:96687426
chr2	96780716	rs2229169	T	G	25534.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.148e+00;DB;DP=448;ExcessHet=3.9794;FS=1.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=0.371;SOR=0.598;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,448:448:99:13872,1342,0
chr2	96780986	rs29000568	C	CTCCTCCTCT	20342.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=222;ExcessHet=3.9794;FS=1.137;MQ=60.00;MQRankSum=0.00;QD=28.10;ReadPosRankSum=0.874;SOR=0.801;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,222:222:99:10694,736,0
chr2	96781986	rs3111873	G	C	1776.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.255e+00;DB;DP=28;ExcessHet=3.9794;FS=4.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=1.87;SOR=2.985;VQSLOD=18.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1055,84,0
chr2	96795857	rs749458	T	C	6952.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.32;SOR=0.931;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2590,258,0
chr2	96874782	.	C	T	549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.93;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.16;ReadPosRankSum=-5.090e-01;SOR=1.708;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:558,0,461
chr2	96950323	rs143898031	C	T	1279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.014;SOR=0.686;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,48:101:99:1288,0,1386
chr2	96956315	rs772176	T	G	7257.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=1.089;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1979,186,0
chr2	96991492	rs772174	A	G	17020.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=199;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=-1.800e-02;SOR=0.767;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,98:199:99:2686,0,2450
chr2	97261593	rs12477963	G	A	223.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.50;SOR=3.912;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr2	97284917	rs12329128	G	A	1541.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=1.609;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1558,147,0
chr2	97285604	rs115348870	G	A	478.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230e-01;DB;DP=33;ExcessHet=3.0103;FS=2.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.865;SOR=1.714;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:487,0,502
chr2	97315570	rs17685664	C	T	518.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=5.283;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:535,39,0
chr2	97319534	rs17685766	G	C	326.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.13;SOR=3.056;VQSLOD=18.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:343,27,0
chr2	97339155	rs72545174	C	CTG	592.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.94;ReadPosRankSum=1.01;SOR=1.085;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:495,33,0
chr2	97357756	rs368566816	CG	C	238.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=29;ExcessHet=3.9794;FS=6.917;MQ=59.75;MQRankSum=0.00;QD=4.67;ReadPosRankSum=-4.310e-01;SOR=0.065;VQSLOD=4.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,10:29:99:192,0,451
chr2	97366303	rs2280355	A	G	1597.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=7.428;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:556,42,0
chr2	97369546	.	C	CTT	330.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DP=7;ExcessHet=3.9794;FS=1.987;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=1.07;SOR=1.347;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:7:25:121,0,25
chr2	97399360	.	T	G	466.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DP=44;ExcessHet=3.0103;FS=3.108;MQ=60.00;MQRankSum=0.00;QD=10.60;ReadPosRankSum=2.29;SOR=1.270;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,18:44:99:475,0,784
chr2	97543139	.	A	AT	36.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.05;ReadPosRankSum=1.15;SOR=0.991;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:36:45,0,36
chr2	97587049	rs34895357	T	C	4280.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405e+00;DB;DP=51;ExcessHet=3.0103;FS=3.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=-3.800e-02;SOR=1.014;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:538,0,893
chr2	97595109	rs6725927	T	C	5227.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.080e-01;DB;DP=79;ExcessHet=3.0103;FS=1.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=-6.340e-01;SOR=0.540;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,42:79:99:1047,0,916
chr2	97613616	rs1624844	T	C	1088.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.67;ReadPosRankSum=-3.180e-01;SOR=0.914;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:166,0,219
chr2	97613748	rs1623881	C	A	793.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.570e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=1.11;SOR=0.418;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:200,0,143
chr2	97617140	rs1257019	T	C	6369.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095e+00;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.540;SOR=0.663;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,48:102:99:1061,0,1297
chr2	97617227	rs1257018	A	G	5204.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.075;SOR=0.652;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,45:101:99:1068,0,1330
chr2	97633013	rs1257012	A	G	809.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=5.994;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr2	97637516	rs6714860	T	C	6470.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=3.030;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2034,174,0
chr2	97637905	rs6715329	T	C	9167.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=34.34;SOR=1.373;VQSLOD=4.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3152,288,0
chr2	97638038	rs1730120	A	G	3149.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=1.423;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:973,81,0
chr2	97643576	rs1796048	T	C	6414.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;DB;DP=86;ExcessHet=3.0103;FS=1.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=-4.600e-01;SOR=0.592;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2686,258,0
chr2	97643758	.	GA	G	34.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=5.72;ReadPosRankSum=0.431;SOR=0.039;VQSLOD=4.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:43:43,0,104
chr2	97693966	rs1669771	A	G	5742.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.458;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=58.61;MQRankSum=0.023;QD=26.34;ReadPosRankSum=0.436;SOR=0.665;VQSLOD=1.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1785,171,0
chr2	97695225	rs1256988	A	C	3265.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=41.56;QD=26.48;SOR=1.191;VQSLOD=-4.566e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1093,96,0
chr2	97711764	rs1148593	A	G	690.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=57.00;MQRankSum=0.887;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.40;ReadPosRankSum=-1.350e-01;SOR=3.258;VQSLOD=-4.089e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr2	97747894	rs1257095	T	C	7182.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=56.29;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.578;VQSLOD=4.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2499,240,0
chr2	97751782	rs62155549	T	C	3618.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=31;ExcessHet=3.0103;FS=1.152;MQ=45.45;MQRankSum=-5.120e+00;QD=33.84;ReadPosRankSum=0.762;SOR=0.995;VQSLOD=-3.865e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:97751782_T_C:1395,93,0:97751782
chr2	97751783	rs62155550	G	A	3618.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.224e+00;DB;DP=31;ExcessHet=3.0103;FS=1.142;MQ=45.42;MQRankSum=-5.120e+00;QD=30.33;ReadPosRankSum=0.942;SOR=0.976;VQSLOD=-3.878e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:97751782_T_C:1395,93,0:97751782
chr2	97751786	rs62155551	G	A	3644.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.500e-01;DB;DP=31;ExcessHet=3.0103;FS=1.156;MQ=45.73;MQRankSum=-4.885e+00;QD=26.61;ReadPosRankSum=0.417;SOR=0.990;VQSLOD=-3.719e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:97751782_T_C:1395,93,0:97751782
chr2	97756975	rs199787470	G	C	623.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=42.46;MQRankSum=-1.645e+00;QD=17.33;ReadPosRankSum=-1.260e-01;SOR=1.209;VQSLOD=-4.067e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,9:10:15:256,0,15
chr2	97757509	rs1257084	C	T	10880.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.437;DB;DP=142;ExcessHet=3.0103;FS=1.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=-7.800e-02;SOR=0.553;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4470,426,0
chr2	97783657	rs144148080	T	C	700.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=53.26;MQRankSum=0.303;NEGATIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=-6.010e-01;SOR=2.400;VQSLOD=-1.604e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr2	97792828	rs200222684	C	T	273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.793;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=58.56;MQRankSum=-9.050e-01;NEGATIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=3.12;SOR=0.836;VQSLOD=-1.435e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,13:19:91:282,0,91
chr2	97808314	rs200495869	G	T	622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=40;ExcessHet=6.9897;FS=5.255;MQ=48.27;MQRankSum=-2.722e+00;QD=4.18;ReadPosRankSum=1.67;SOR=1.303;VQSLOD=-3.047e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,14:40:99:326,0,726
chr2	97808349	rs62153043	T	C	2217.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942e+00;DB;DP=59;ExcessHet=6.9897;FS=3.178;MQ=49.89;MQRankSum=-6.596e+00;QD=10.27;ReadPosRankSum=-1.979e+00;SOR=0.493;VQSLOD=-4.211e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,31:59:99:721,0,713
chr2	97808429	rs112299457	T	G	114.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380e-01;DB;DP=75;ExcessHet=3.9794;FS=12.234;MQ=52.05;MQRankSum=-3.337e+00;NEGATIVE_TRAIN_SITE;QD=0.69;ReadPosRankSum=0.956;SOR=1.793;VQSLOD=-4.258e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,9:75:28:28,0,1919
chr2	97814956	rs4386368	G	A	10297.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=57.77;QD=30.92;SOR=0.954;VQSLOD=1.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:3991,412,0
chr2	97817294	.	A	G	284.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930e+00;DP=8;ExcessHet=4.7712;FS=3.979;MQ=46.43;MQRankSum=-2.369e+00;QD=11.84;ReadPosRankSum=1.27;SOR=2.400;VQSLOD=-3.651e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:97817294_A_G:111,0,201:97817294
chr2	97817296	rs369657813	C	T	523.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191e+00;DB;DP=8;ExcessHet=4.7712;FS=3.979;MQ=46.43;MQRankSum=-2.369e+00;QD=21.82;ReadPosRankSum=1.63;SOR=2.400;VQSLOD=-3.369e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:97817294_A_G:111,0,201:97817294
chr2	97817308	.	T	C	445.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335e+00;DP=11;ExcessHet=4.7712;FS=0.000;MQ=44.81;MQRankSum=-2.054e+00;QD=11.14;ReadPosRankSum=0.171;SOR=0.730;VQSLOD=-3.931e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:97817294_A_G:192,0,237:97817294
chr2	97817317	rs373148437	A	G	1026.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.40;DB;DP=13;ExcessHet=4.7712;FS=3.745;MQ=44.28;MQRankSum=-2.232e+00;QD=22.82;ReadPosRankSum=2.91;SOR=2.206;VQSLOD=-4.153e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,7:13:99:0|1:97817294_A_G:276,0,231:97817294
chr2	97817330	.	C	T	194.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DP=16;ExcessHet=3.9794;FS=0.000;MQ=43.31;MQRankSum=-1.480e+00;QD=3.60;ReadPosRankSum=1.08;SOR=0.223;VQSLOD=-4.194e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:94:94,0,493
chr2	97817345	rs377431404	T	C	646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.22;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=42.05;MQRankSum=-5.140e-01;QD=6.88;ReadPosRankSum=-2.600e-01;SOR=0.105;VQSLOD=-4.292e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,3:20:66:66,0,618
chr2	97817393	rs73961159	A	T	2881.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.45;DB;DP=35;ExcessHet=6.9897;FS=3.653;MQ=45.57;MQRankSum=-3.881e+00;QD=18.36;ReadPosRankSum=1.55;SOR=0.262;VQSLOD=-2.930e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,21:35:99:0|1:97817393_A_T:819,0,607:97817393
chr2	97817394	rs73961160	T	G	2881.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.74;DB;DP=37;ExcessHet=6.9897;FS=3.722;MQ=45.88;MQRankSum=-4.007e+00;QD=18.01;ReadPosRankSum=2.06;SOR=0.246;VQSLOD=-3.021e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,21:37:99:0|1:97817393_A_T:819,0,607:97817393
chr2	97817420	rs113395174	G	A	4183.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468e+00;DB;DP=50;ExcessHet=6.9897;FS=16.726;MQ=50.15;MQRankSum=-3.863e+00;NEGATIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.605;SOR=0.192;VQSLOD=-3.682e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,27:50:99:0|1:97817420_G_A:1061,0,884:97817420
chr2	97817429	rs113099198	A	C	4513.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=59;ExcessHet=6.9897;FS=19.296;MQ=49.42;MQRankSum=-1.694e+00;NEGATIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.010;SOR=0.184;VQSLOD=-4.305e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,30:59:99:0|1:97817420_G_A:1160,0,1253:97817420
chr2	97817449	rs144612168	C	T	5249.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DB;DP=72;ExcessHet=6.9897;FS=15.788;MQ=48.46;MQRankSum=-3.020e-01;QD=18.10;ReadPosRankSum=-1.983e+00;SOR=0.264;VQSLOD=-4.185e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,34:72:99:0|1:97817420_G_A:1349,0,1555:97817420
chr2	97817450	rs146686632	C	G	5315.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=74;ExcessHet=6.9897;FS=18.571;MQ=48.44;MQRankSum=-4.370e-01;QD=18.27;ReadPosRankSum=-1.943e+00;SOR=0.246;VQSLOD=-4.904e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,35:74:99:0|1:97817420_G_A:1371,0,1552:97817420
chr2	97817564	rs33971912	C	T,CT	16658.71	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=42.24;POSITIVE_TRAIN_SITE;QD=33.69;SOR=0.930;VQSLOD=5.10;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,37,75:112:99:4105,2634,2946,1499,0,1262
chr2	97817640	rs75514873	A	G	1832.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=78;ExcessHet=6.9897;FS=13.193;MQ=51.41;MQRankSum=3.37;NEGATIVE_TRAIN_SITE;QD=6.17;ReadPosRankSum=-2.065e+00;SOR=1.522;VQSLOD=-4.008e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:64,14:78:99:0|1:97817617_T_C:414,0,2665:97817617
chr2	97817647	rs79579412	A	G	1505.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178e+00;DB;DP=74;ExcessHet=6.9897;FS=12.727;MQ=52.00;MQRankSum=3.07;NEGATIVE_TRAIN_SITE;QD=5.30;ReadPosRankSum=-2.098e+00;SOR=1.558;VQSLOD=-3.777e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,12:74:99:0|1:97817617_T_C:317,0,2567:97817617
chr2	97817802	rs74945648	TCACTG	T	144.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.330e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.73;MQRankSum=0.00;QD=16.03;ReadPosRankSum=-1.710e+00;SOR=0.495;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,340
chr2	97818348	rs58438329	A	G	3975.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.980;DB;DP=25;ExcessHet=3.0103;FS=1.632;MQ=58.72;MQRankSum=-2.346e+00;QD=23.81;ReadPosRankSum=-1.415e+00;SOR=0.520;VQSLOD=-9.230e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:793,75,0
chr2	97823971	rs13011421	T	C	3192.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.40;DB;DP=39;ExcessHet=3.0103;FS=8.357;MQ=59.77;MQRankSum=0.00;QD=25.54;ReadPosRankSum=2.39;SOR=0.216;VQSLOD=2.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,37:39:99:1320,108,0
chr2	97827737	rs76168297	C	T	280.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=17;ExcessHet=6.9897;FS=6.246;MQ=53.19;MQRankSum=-1.150e+00;NEGATIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=-6.320e-01;SOR=1.964;VQSLOD=-2.322e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,3:17:84:0|1:97827737_C_T:84,0,577:97827737
chr2	97827757	rs76324746	A	G	349.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=51.17;MQRankSum=-1.363e+00;NEGATIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=-8.120e-01;SOR=0.507;VQSLOD=-3.395e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,6:23:99:0|1:97827737_C_T:140,0,679:97827737
chr2	97827787	rs113653147	G	A	575.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691e+00;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=51.69;MQRankSum=-1.097e+00;NEGATIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-1.820e-01;SOR=0.610;VQSLOD=-3.135e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,7:25:99:0|1:97827787_G_A:226,0,765:97827787
chr2	97827800	rs111338734	A	G	563.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.220e-01;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=51.17;MQRankSum=-9.040e-01;NEGATIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=1.05;SOR=0.698;VQSLOD=-3.236e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,7:29:99:0|1:97827787_G_A:217,0,847:97827787
chr2	97827818	rs34725305	C	CT	1039.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e-01;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=50.65;MQRankSum=-3.174e+00;QD=18.25;ReadPosRankSum=-3.130e-01;SOR=0.667;VQSLOD=0.081;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,24:29:99:621,0,101
chr2	97827830	rs201574565	T	A	217.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.540e-01;DB;DP=30;ExcessHet=6.9897;FS=3.214;MQ=50.29;MQRankSum=2.20;NEGATIVE_TRAIN_SITE;QD=3.69;ReadPosRankSum=0.865;SOR=1.402;VQSLOD=-2.911e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,3:30:45:45,0,1134
chr2	97827839	rs199729690	G	A	373.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810e-01;DB;DP=29;ExcessHet=6.9897;FS=4.218;MQ=50.06;MQRankSum=0.359;NEGATIVE_TRAIN_SITE;QD=6.56;ReadPosRankSum=0.918;SOR=1.006;VQSLOD=-2.528e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,7:29:99:148,0,550
chr2	97828854	rs78227967	G	A	976.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=49.50;MQRankSum=-1.180e+00;NEGATIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=0.579;SOR=0.560;VQSLOD=-2.895e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,12:13:6:0|1:97828854_G_A:432,0,6:97828854
chr2	97828982	rs62153884	C	T	2904.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640e-01;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=40.03;MQRankSum=-1.170e+00;QD=16.14;ReadPosRankSum=-2.250e-01;SOR=0.651;VQSLOD=-5.067e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,34:45:99:792,0,187
chr2	97829204	rs75770158	C	T	664.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.490e-01;DB;DP=8;ExcessHet=6.9897;FS=6.009;MQ=49.70;MQRankSum=-3.719e+00;NEGATIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-5.100e-01;SOR=2.509;VQSLOD=-3.323e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:37:37,0,195
chr2	97829973	rs200092139	G	A	145.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=38.58;MQRankSum=-2.442e+00;QD=4.40;ReadPosRankSum=-1.051e+00;SOR=0.148;VQSLOD=-5.229e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,4:19:99:108,0,517
chr2	97829998	rs201970613	A	T	259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=37.52;MQRankSum=-2.989e+00;QD=5.76;ReadPosRankSum=2.06;SOR=0.133;VQSLOD=-5.262e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,7:23:99:246,0,557
chr2	97830016	rs201424946	G	T	491.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.215e+00;DB;DP=36;ExcessHet=3.9794;FS=3.840;MQ=38.17;MQRankSum=-2.346e+00;QD=6.14;ReadPosRankSum=-4.950e-01;SOR=0.216;VQSLOD=-4.540e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,8:36:99:211,0,1037
chr2	97830363	rs77228750	T	A	224.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=54.01;MQRankSum=-4.018e+00;NEGATIVE_TRAIN_SITE;QD=5.75;ReadPosRankSum=0.351;SOR=0.126;VQSLOD=-3.745e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:145,0,567
chr2	97830392	rs74515241	G	C	534.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=49.49;MQRankSum=-3.499e+00;NEGATIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=0.393;SOR=0.631;VQSLOD=-3.239e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,8:15:99:0|1:97830392_G_C:315,0,294:97830392
chr2	97830393	rs75142206	G	A	534.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=49.49;MQRankSum=-3.499e+00;NEGATIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=0.393;SOR=0.631;VQSLOD=-3.241e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,8:15:99:0|1:97830392_G_C:315,0,294:97830392
chr2	97830435	rs200031970	G	T	477.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=4.7712;FS=0.000;MQ=45.44;MQRankSum=-1.611e+00;QD=26.53;ReadPosRankSum=1.83;SOR=1.493;VQSLOD=-3.018e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:99:0|1:97830435_G_T:246,0,102:97830435
chr2	97830438	rs77360100	A	G	477.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=8;ExcessHet=4.7712;FS=0.000;MQ=45.44;MQRankSum=-1.611e+00;QD=26.53;ReadPosRankSum=1.83;SOR=1.493;VQSLOD=-3.017e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:99:0|1:97830435_G_T:246,0,102:97830435
chr2	97833135	rs77483448	T	C	497.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=49.23;MQRankSum=-3.440e+00;QD=11.58;ReadPosRankSum=-4.390e-01;SOR=0.368;VQSLOD=-3.387e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:170,0,237
chr2	97833139	rs140541372	GGGTCCTATTT	G	676.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.340e-01;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=48.54;MQRankSum=-3.224e+00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-2.630e-01;SOR=0.346;VQSLOD=1.18;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:97833139_GGGTCCTATTT_G:231,0,276:97833139
chr2	97833159	rs80186109	T	A	859.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=47.43;MQRankSum=-3.743e+00;QD=15.09;ReadPosRankSum=-1.905e+00;SOR=0.902;VQSLOD=-3.775e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:97833139_GGGTCCTATTT_G:290,0,332:97833139
chr2	97833193	rs75122869	G	A	2126.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.277e+00;DB;DP=38;ExcessHet=6.9897;FS=6.638;MQ=44.93;MQRankSum=-4.264e+00;QD=19.88;ReadPosRankSum=-8.620e-01;SOR=1.736;VQSLOD=-3.762e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,24:38:99:788,0,354
chr2	97833199	rs139468976	A	T	257.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=47;ExcessHet=6.9897;FS=0.000;MQ=45.12;MQRankSum=-1.466e+00;QD=1.88;ReadPosRankSum=-3.960e-01;SOR=0.553;VQSLOD=-4.385e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,8:47:99:141,0,1198
chr2	97833215	rs146634230	T	C	4785.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DB;DP=64;ExcessHet=6.9897;FS=2.957;MQ=44.63;MQRankSum=-6.097e+00;QD=25.06;ReadPosRankSum=-7.350e-01;SOR=0.960;VQSLOD=-3.833e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,45:64:99:0|1:97833215_T_C:1889,0,712:97833215
chr2	97833217	rs150423357	C	T	4785.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=71;ExcessHet=6.9897;FS=1.248;MQ=44.41;MQRankSum=-5.882e+00;QD=23.81;ReadPosRankSum=-7.130e-01;SOR=0.816;VQSLOD=-4.203e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,50:71:99:0|1:97833215_T_C:1889,0,712:97833215
chr2	97833394	rs1636143	C	T	545.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=65;ExcessHet=6.9897;FS=4.066;MQ=43.95;MQRankSum=-3.840e+00;QD=2.69;ReadPosRankSum=-2.546e+00;SOR=0.803;VQSLOD=-4.409e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:56,9:65:99:0|1:97833394_C_T:211,0,2231:97833394
chr2	97833553	rs76811792	C	T	1475.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291e+00;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=44.07;MQRankSum=0.602;QD=17.16;ReadPosRankSum=-3.300e-01;SOR=0.632;VQSLOD=-4.425e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:448,0,235
chr2	97833567	rs76160111	A	G	1645.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DB;DP=22;ExcessHet=6.9897;FS=5.399;MQ=46.04;MQRankSum=0.932;QD=21.10;ReadPosRankSum=0.735;SOR=1.808;VQSLOD=-3.184e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,13:22:99:0|1:97833567_A_G:519,0,343:97833567
chr2	97833569	rs78400826	C	T	1645.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.187e+00;DB;DP=22;ExcessHet=6.9897;FS=1.589;MQ=46.32;MQRankSum=0.932;QD=21.66;ReadPosRankSum=0.468;SOR=1.281;VQSLOD=-3.562e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,13:22:99:0|1:97833567_A_G:519,0,343:97833567
chr2	97833583	rs72945197	C	T	1322.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=49.33;MQRankSum=0.665;QD=20.35;ReadPosRankSum=0.187;SOR=0.881;VQSLOD=-3.190e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,14:21:99:441,0,215
chr2	97833651	rs72945198	C	A	911.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.920e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=58.49;MQRankSum=-4.930e-01;NEGATIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=0.253;SOR=2.235;VQSLOD=-1.219e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:53:291,0,53
chr2	97845607	.	G	A	1879.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356e+00;DP=89;ExcessHet=6.9897;FS=13.831;MQ=52.08;MQRankSum=-2.512e+00;NEGATIVE_TRAIN_SITE;QD=6.39;ReadPosRankSum=1.67;SOR=1.497;VQSLOD=-3.708e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,16:89:99:0|1:97845607_G_A:452,0,3017:97845607
chr2	97845609	.	C	T	1918.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DP=89;ExcessHet=6.9897;FS=15.297;MQ=52.22;MQRankSum=-2.547e+00;NEGATIVE_TRAIN_SITE;QD=6.42;ReadPosRankSum=1.48;SOR=1.571;VQSLOD=-3.990e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,16:89:99:0|1:97845607_G_A:452,0,3017:97845607
chr2	97845612	.	C	G	1897.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.750e-01;DP=89;ExcessHet=6.9897;FS=13.517;MQ=52.34;MQRankSum=-2.656e+00;NEGATIVE_TRAIN_SITE;QD=6.26;ReadPosRankSum=1.14;SOR=1.456;VQSLOD=-3.531e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,16:89:99:0|1:97845607_G_A:452,0,3017:97845607
chr2	97845616	rs199729164	G	T	1885.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485e+00;DB;DP=90;ExcessHet=6.9897;FS=14.982;MQ=52.71;MQRankSum=-2.898e+00;NEGATIVE_TRAIN_SITE;QD=6.10;ReadPosRankSum=0.741;SOR=1.540;VQSLOD=-3.828e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,16:90:99:0|1:97845607_G_A:449,0,3035:97845607
chr2	97845650	rs75965578	A	G	758.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.340e-01;DB;DP=93;ExcessHet=6.9897;FS=3.420;MQ=53.86;MQRankSum=-4.310e+00;NEGATIVE_TRAIN_SITE;QD=2.57;ReadPosRankSum=-3.197e+00;SOR=0.819;VQSLOD=-4.262e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:79,14:93:99:99,0,2093
chr2	97845782	rs77761871	C	T	237.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.850e-01;DB;DP=33;ExcessHet=3.9794;FS=7.435;MQ=57.23;MQRankSum=-4.261e+00;NEGATIVE_TRAIN_SITE;QD=4.48;ReadPosRankSum=-7.950e-01;SOR=2.387;VQSLOD=-3.446e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,6:33:99:0|1:97845782_C_T:171,0,1116:97845782
chr2	97845783	.	A	G	237.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DP=33;ExcessHet=3.9794;FS=4.815;MQ=57.18;MQRankSum=-4.141e+00;NEGATIVE_TRAIN_SITE;QD=4.57;ReadPosRankSum=-9.510e-01;SOR=2.215;VQSLOD=-3.144e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,6:33:99:0|1:97845782_C_T:171,0,1116:97845782
chr2	97845793	rs111510592	C	G	121.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.010e-01;DB;DP=27;ExcessHet=3.9794;FS=2.443;MQ=57.94;MQRankSum=-4.141e+00;NEGATIVE_TRAIN_SITE;QD=2.64;ReadPosRankSum=0.154;SOR=1.312;VQSLOD=-3.649e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,3:27:54:0|1:97845782_C_T:54,0,999:97845782
chr2	97845842	rs74705138	T	C	142.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=15;ExcessHet=6.9897;FS=2.433;MQ=56.71;MQRankSum=-3.589e+00;NEGATIVE_TRAIN_SITE;QD=2.98;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=-3.254e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,2:15:28:28,0,460
chr2	97847606	rs2443851	A	G	2739.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.220e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=45.18;MQRankSum=-5.394e+00;QD=24.46;ReadPosRankSum=-3.090e-01;SOR=0.691;VQSLOD=-3.899e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:731,72,0
chr2	97849219	rs12996352	T	C	2660.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.169e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=0.175;SOR=0.738;VQSLOD=6.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:814,72,0
chr2	97851069	rs62154801	A	G	7884.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.490e-01;DB;DP=127;ExcessHet=6.9897;FS=6.523;MQ=47.35;MQRankSum=2.94;QD=21.03;ReadPosRankSum=-3.270e-01;SOR=1.039;VQSLOD=-3.044e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,112:127:99:3060,0,295
chr2	97851077	.	C	G	965.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DP=132;ExcessHet=6.9897;FS=15.707;MQ=46.71;MQRankSum=-4.062e+00;QD=2.43;ReadPosRankSum=0.466;SOR=0.455;VQSLOD=-5.179e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:117,15:132:99:0|1:97851073_GC_G:311,0,4991:97851073
chr2	97851144	rs369748731	T	A	634.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.350e-01;DB;DP=185;ExcessHet=3.9794;FS=3.182;MQ=46.52;MQRankSum=-3.695e+00;QD=1.69;ReadPosRankSum=-3.310e-01;SOR=1.143;VQSLOD=-3.845e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:161,24:185:99:494,0,6742
chr2	97851411	rs201174426	G	A	50.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=11;ExcessHet=3.9794;FS=10.395;MQ=57.91;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=4.60;ReadPosRankSum=0.551;SOR=0.829;VQSLOD=-2.293e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:57:0|1:97851411_G_A:57,0,530:97851411
chr2	97851415	rs78288445	T	G	50.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=10;ExcessHet=3.9794;FS=10.052;MQ=57.82;MQRankSum=-2.287e+00;NEGATIVE_TRAIN_SITE;QD=5.06;ReadPosRankSum=0.728;SOR=0.830;VQSLOD=-2.228e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:57:0|1:97851411_G_A:57,0,578:97851411
chr2	97851417	rs79210322	G	A	74.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DB;DP=10;ExcessHet=3.9794;FS=10.052;MQ=57.82;MQRankSum=-2.287e+00;NEGATIVE_TRAIN_SITE;QD=7.41;ReadPosRankSum=0.728;SOR=0.830;VQSLOD=-2.084e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:97851411_G_A:60,0,542:97851411
chr2	97851420	rs201217673	C	A	74.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545e+00;DB;DP=10;ExcessHet=3.9794;FS=7.788;MQ=57.24;MQRankSum=-2.287e+00;NEGATIVE_TRAIN_SITE;QD=2.96;ReadPosRankSum=0.728;SOR=0.043;VQSLOD=-2.077e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:97851411_G_A:60,0,542:97851411
chr2	97860487	rs59466168	T	C	6510.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.047;DB;DP=118;ExcessHet=6.9897;FS=1.781;MQ=54.78;MQRankSum=1.59;NEGATIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.476;SOR=0.536;VQSLOD=-2.887e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,79:118:99:2099,0,860
chr2	97860738	rs62154813	A	G	735.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=15;ExcessHet=6.9897;FS=6.209;MQ=59.64;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.082;SOR=2.753;VQSLOD=-1.585e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:336,0,160
chr2	97862260	rs1901501	T	A	8926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=59.86;QD=32.94;SOR=1.583;VQSLOD=3.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2321,227,0
chr2	97862396	rs7573581	G	A	6122.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.341e+00;DB;DP=161;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=-7.480e-01;QD=12.68;ReadPosRankSum=-3.110e-01;SOR=0.689;VQSLOD=0.615;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:59,102:161:99:2446,0,1321
chr2	97864288	rs56159881	T	C	9436.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.972;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=58.08;MQRankSum=-3.698e+00;NEGATIVE_TRAIN_SITE;QD=27.04;ReadPosRankSum=0.014;SOR=0.709;VQSLOD=-1.468e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2504,231,0
chr2	97864333	rs61218502	C	A	9278.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.026e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=55.00;MQRankSum=-4.152e+00;NEGATIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=1.16;SOR=0.738;VQSLOD=-3.208e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,50:50:99:1|1:97864333_C_A:2250,151,0:97864333
chr2	97864334	rs56835800	C	T	9278.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.110;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=54.93;MQRankSum=-4.247e+00;NEGATIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=0.999;SOR=0.738;VQSLOD=-3.280e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,50:50:99:1|1:97864333_C_A:2250,151,0:97864333
chr2	97864374	rs60795069	G	T	4868.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.590e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=51.58;MQRankSum=-4.275e+00;NEGATIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=-9.270e-01;SOR=0.792;VQSLOD=-3.079e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1132,93,0
chr2	97866299	rs56289967	C	A	1165.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340e+00;DB;DP=39;ExcessHet=6.9897;FS=0.000;MQ=59.71;MQRankSum=0.00;QD=8.83;ReadPosRankSum=0.457;SOR=0.598;VQSLOD=3.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,12:39:99:265,0,943
chr2	97866370	rs55879702	A	G	387.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523e+00;DB;DP=13;ExcessHet=6.9897;FS=4.559;MQ=60.00;MQRankSum=0.00;QD=9.70;ReadPosRankSum=0.464;SOR=0.065;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:133,0,304
chr2	97867870	rs9324211	G	C	8172.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.363e+00;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.09;ReadPosRankSum=-5.000e-02;SOR=0.734;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2609,228,0
chr2	97870051	rs6577004	G	A	1725.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=30;ExcessHet=6.9897;FS=9.476;MQ=54.24;MQRankSum=0.064;NEGATIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.430;SOR=1.521;VQSLOD=-1.903e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,21:30:99:565,0,162
chr2	97873393	rs6718582	C	T	891.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.520e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=56.85;MQRankSum=-7.670e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=1.07;SOR=1.751;VQSLOD=-1.682e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
chr2	97873515	rs4063410	C	T	2814.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.181;DB;DP=32;ExcessHet=3.0103;FS=3.926;MQ=47.39;MQRankSum=-1.938e+00;QD=22.52;ReadPosRankSum=0.970;SOR=1.166;VQSLOD=-2.539e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1094,96,0
chr2	97873630	rs12052928	A	T	3329.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=42;ExcessHet=3.0103;FS=12.906;MQ=52.12;MQRankSum=1.69;NEGATIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=1.88;SOR=0.132;VQSLOD=-2.798e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1244,126,0
chr2	97875275	.	G	T	324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391e+00;DP=14;ExcessHet=6.9897;FS=1.726;MQ=56.87;MQRankSum=-3.460e+00;NEGATIVE_TRAIN_SITE;QD=5.08;ReadPosRankSum=-6.370e-01;SOR=0.341;VQSLOD=-2.991e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:97875275_G_T:48,0,756:97875275
chr2	97875276	.	A	G	324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=14;ExcessHet=6.9897;FS=1.726;MQ=56.87;MQRankSum=-3.460e+00;NEGATIVE_TRAIN_SITE;QD=5.08;ReadPosRankSum=-7.070e-01;SOR=0.341;VQSLOD=-2.994e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:97875275_G_T:48,0,756:97875275
chr2	97877292	rs10171441	C	A	7019.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.93;QD=34.70;SOR=1.574;VQSLOD=3.98;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1687,141,0
chr2	97877399	rs10186233	T	C	12474.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=59.96;QD=30.80;SOR=0.835;VQSLOD=3.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2810,280,0
chr2	97877440	rs35711845	T	C	4739.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430e-01;DB;DP=96;ExcessHet=6.9897;FS=1.103;MQ=59.98;MQRankSum=0.00;QD=11.15;ReadPosRankSum=-1.627e+00;SOR=0.796;VQSLOD=4.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,57:96:99:1402,0,787
chr2	97877478	rs10194525	G	A	4095.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-01;DB;DP=95;ExcessHet=6.9897;FS=0.388;MQ=59.98;MQRankSum=0.00;QD=11.22;ReadPosRankSum=0.794;SOR=0.719;VQSLOD=4.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,40:95:99:886,0,1446
chr2	97883087	rs62156175	A	G	1021.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=56;ExcessHet=6.9897;FS=3.437;MQ=48.28;MQRankSum=-3.467e+00;QD=5.52;ReadPosRankSum=0.548;SOR=0.445;VQSLOD=-3.298e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,10:56:99:0|1:97883087_A_G:254,0,2497:97883087
chr2	97883094	rs62156176	T	G	1062.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=54;ExcessHet=6.9897;FS=4.627;MQ=49.00;MQRankSum=-3.186e+00;QD=6.07;ReadPosRankSum=-6.100e-02;SOR=0.396;VQSLOD=-2.519e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,9:54:99:0|1:97883087_A_G:222,0,2466:97883087
chr2	97909862	.	A	G	1726.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694e+00;DP=21;ExcessHet=6.9897;FS=8.057;MQ=39.68;MQRankSum=-2.278e+00;QD=22.43;ReadPosRankSum=-1.560e+00;SOR=0.118;VQSLOD=-4.652e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,15:21:99:0|1:97909853_G_A:612,0,324:97909853
chr2	97911720	.	TAGA	T	31.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=3.0103;FS=0.000;MQ=27.00;MQRankSum=0.00;QD=15.96;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:97911720_TAGA_T:39,0,39:97911720
chr2	98128051	.	C	CAG	977.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.330e-01;DP=70;ExcessHet=6.9897;FS=0.000;MQ=27.59;MQRankSum=-1.532e+00;QD=5.43;ReadPosRankSum=-6.730e-01;SOR=0.631;VQSLOD=0.222;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,5:70:8:0|1:98128035_C_CA:8,0,2798:98128035
chr2	98128574	rs199847136	C	T	4138.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669e+00;DB;DP=52;ExcessHet=6.9897;FS=7.701;MQ=41.53;MQRankSum=2.56;QD=17.76;ReadPosRankSum=0.891;SOR=1.317;VQSLOD=-5.025e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,37:52:99:1005,0,285
chr2	98128630	rs368375291	G	T	3132.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.027e+00;DB;DP=27;ExcessHet=6.9897;FS=2.566;MQ=44.65;MQRankSum=3.04;QD=23.92;ReadPosRankSum=-1.586e+00;SOR=2.082;VQSLOD=-4.337e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:601,0,526
chr2	98154623	rs187904341	C	T	333.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=16;ExcessHet=1.5490;FS=6.956;MQ=45.73;MQRankSum=-2.744e+00;QD=13.36;ReadPosRankSum=0.949;SOR=2.424;VQSLOD=-4.356e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,3:16:67:67,0,325
chr2	98163927	rs12993579	A	T	529.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.9794;FS=5.528;MQ=54.32;MQRankSum=-5.240e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=0.524;SOR=0.116;VQSLOD=-1.302e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:77,0,65
chr2	98164020	rs13001324	C	T	2275.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.950e-01;DB;DP=19;ExcessHet=3.9794;FS=8.748;MQ=51.83;MQRankSum=-2.876e+00;NEGATIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=1.83;SOR=0.199;VQSLOD=-2.146e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,8:19:99:0|1:98164020_C_T:324,0,577:98164020
chr2	98164021	rs13017573	T	C	2275.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=20;ExcessHet=3.9794;FS=8.889;MQ=51.76;MQRankSum=-3.044e+00;NEGATIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=1.74;SOR=0.180;VQSLOD=-2.155e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,9:20:99:0|1:98164020_C_T:324,0,577:98164020
chr2	98164084	rs13017744	T	A	2169.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.820e-01;DB;DP=39;ExcessHet=3.9794;FS=1.448;MQ=50.19;MQRankSum=-3.351e+00;NEGATIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=1.24;SOR=0.896;VQSLOD=-3.330e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,15:39:99:302,0,603
chr2	98164184	rs13001728	C	G	3235.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DB;DP=53;ExcessHet=3.9794;FS=2.853;MQ=55.14;MQRankSum=-1.286e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=-1.134e+00;SOR=0.600;VQSLOD=-7.302e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:514,0,790
chr2	98168055	rs1972985	T	C	2543.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;QD=25.96;ReadPosRankSum=0.672;SOR=0.655;VQSLOD=5.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,22:32:99:733,0,290
chr2	98169519	rs9679287	G	C	484.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.36;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=-8.160e-01;SOR=0.846;VQSLOD=0.787;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:132,0,138
chr2	98169544	rs9677087	C	G	773.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.16;MQRankSum=-8.420e-01;QD=16.82;ReadPosRankSum=0.753;SOR=0.902;VQSLOD=-4.914e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:183,0,254
chr2	98169583	rs9679293	G	T	1683.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=24;ExcessHet=3.9794;FS=2.000;MQ=59.13;MQRankSum=-3.500e-01;QD=18.92;ReadPosRankSum=0.751;SOR=0.960;VQSLOD=-8.236e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,11:24:99:324,0,343
chr2	98169742	rs12998184	A	C	2954.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=36;ExcessHet=3.9794;FS=14.674;MQ=59.78;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=1.32;SOR=0.963;VQSLOD=0.970;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:490,0,507
chr2	98169901	rs12712055	G	T	1885.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DB;DP=13;ExcessHet=3.9794;FS=1.209;MQ=54.11;MQRankSum=1.19;NEGATIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=0.606;SOR=1.012;VQSLOD=-2.585e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:255,0,134
chr2	98171393	.	G	A	35.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391e+00;DP=13;ExcessHet=3.9794;FS=4.568;MQ=60.00;MQRankSum=0.00;QD=1.13;ReadPosRankSum=1.48;SOR=0.052;VQSLOD=21.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,2:13:10:10,0,403
chr2	98171406	.	T	A	124.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.938e+00;DP=16;ExcessHet=3.0103;FS=3.468;MQ=60.00;MQRankSum=0.00;QD=7.78;ReadPosRankSum=-2.425e+00;SOR=0.105;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,4:16:99:0|1:98171406_T_A:132,0,481:98171406
chr2	98171409	.	C	T	146.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461e+00;DP=17;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;QD=8.62;ReadPosRankSum=-2.741e+00;SOR=0.160;VQSLOD=20.69;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,5:17:99:0|1:98171406_T_A:154,0,478:98171406
chr2	98171424	.	T	A	148.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.070e-01;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.25;MQRankSum=0.00;QD=6.44;ReadPosRankSum=-6.710e-01;SOR=0.392;VQSLOD=-9.715e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,5:23:99:0|1:98171424_T_A:156,0,741:98171424
chr2	98171434	.	T	C	168.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.31;MQRankSum=0.00;QD=6.03;ReadPosRankSum=0.336;SOR=0.527;VQSLOD=-9.013e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,6:28:99:0|1:98171424_T_A:177,0,1032:98171424
chr2	98171437	.	T	C	168.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.064e+00;DP=31;ExcessHet=3.0103;FS=0.000;MQ=58.98;MQRankSum=0.00;QD=5.43;ReadPosRankSum=0.950;SOR=0.569;VQSLOD=-9.802e-01;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,6:31:99:0|1:98171424_T_A:177,0,1032:98171424
chr2	98171443	.	C	CCG	153.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125e+00;DP=35;ExcessHet=3.0103;FS=0.000;MQ=59.08;MQRankSum=0.00;QD=4.38;ReadPosRankSum=1.58;SOR=0.714;VQSLOD=5.18;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,6:35:99:0|1:98171424_T_A:162,0,1217:98171424
chr2	98171448	.	A	G	185.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DP=37;ExcessHet=3.0103;FS=0.000;MQ=58.82;MQRankSum=0.00;QD=5.01;ReadPosRankSum=1.13;SOR=0.916;VQSLOD=-1.161e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,7:37:99:0|1:98171424_T_A:194,0,1214:98171424
chr2	98171459	.	T	C	43.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.077e+00;DP=44;ExcessHet=3.0103;FS=0.000;MQ=58.42;MQRankSum=-2.237e+00;NEGATIVE_TRAIN_SITE;QD=0.98;ReadPosRankSum=2.31;SOR=0.899;VQSLOD=-2.515e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,7:44:52:52,0,1111
chr2	98171488	.	C	T	143.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334e+00;DP=52;ExcessHet=3.0103;FS=1.776;MQ=58.66;MQRankSum=-2.479e+00;NEGATIVE_TRAIN_SITE;QD=2.75;SOR=1.026;VQSLOD=-2.313e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,7:52:99:0|1:98171480_T_TAA:152,0,1942:98171480
chr2	98171493	rs112043326	C	A	146.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497e+00;DB;DP=53;ExcessHet=3.0103;FS=1.759;MQ=58.68;MQRankSum=-2.508e+00;NEGATIVE_TRAIN_SITE;QD=2.76;ReadPosRankSum=1.52;SOR=0.990;VQSLOD=-2.382e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,7:53:99:0|1:98171480_T_TAA:155,0,1900:98171480
chr2	98171807	rs12712057	T	C	1370.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=10;ExcessHet=3.9794;FS=5.958;MQ=59.75;MQRankSum=0.00;QD=26.36;ReadPosRankSum=0.432;SOR=0.169;VQSLOD=3.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:144,0,183
chr2	98173368	rs13015850	C	T	2691.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=48.00;MQRankSum=-1.642e+00;QD=25.88;ReadPosRankSum=1.32;SOR=0.732;VQSLOD=-3.173e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,16:33:99:0|1:98173368_C_T:618,0,1015:98173368
chr2	98173369	rs13025386	A	G	2691.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=48.00;MQRankSum=-1.804e+00;QD=25.40;ReadPosRankSum=0.909;SOR=0.718;VQSLOD=-3.136e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,16:34:99:0|1:98173368_C_T:618,0,1015:98173368
chr2	98175138	rs11692849	G	A	2602.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e-01;DB;DP=28;ExcessHet=3.9794;FS=1.513;MQ=51.53;MQRankSum=-3.972e+00;NEGATIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=0.354;SOR=0.536;VQSLOD=-3.176e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:403,0,375
chr2	98177124	rs11681640	T	G	3510.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=57.06;MQRankSum=-4.500e-01;QD=19.72;ReadPosRankSum=-1.410e-01;SOR=0.684;VQSLOD=-1.662e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,26:58:99:703,0,797
chr2	98177305	rs114646833	C	G	1069.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=19;ExcessHet=3.9794;FS=8.221;MQ=48.06;MQRankSum=-2.606e+00;QD=16.21;ReadPosRankSum=0.329;SOR=2.274;VQSLOD=-3.568e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,3:19:56:56,0,508
chr2	98192743	.	A	AAC	545.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DP=3;ExcessHet=3.9794;FS=1.906;MQ=49.55;MQRankSum=-9.670e-01;QD=24.81;ReadPosRankSum=1.03;SOR=1.270;VQSLOD=0.100;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,1:3:67:0|1:98192743_A_AAC:67,0,168:98192743
chr2	98192749	rs55777246	T	C	651.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=1.532;MQ=52.52;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.334;SOR=1.179;VQSLOD=-2.445e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:98192743_A_AAC:102,0,165:98192743
chr2	98195213	rs13427163	T	C	1194.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=57.64;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=0.619;SOR=1.378;VQSLOD=0.115;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:245,0,273
chr2	98195581	rs13419462	C	T	1399.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=29;ExcessHet=3.9794;FS=5.563;MQ=45.37;MQRankSum=-2.369e+00;QD=25.92;ReadPosRankSum=1.61;SOR=3.383;VQSLOD=-4.886e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,19:29:99:633,0,316
chr2	98196707	rs7588718	G	T	207.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=4.7712;FS=6.021;MQ=54.58;MQRankSum=0.967;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=0.00;SOR=3.912;VQSLOD=-1.479e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:145,0,29
chr2	98196849	rs34131105	G	A	3205.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.014e+00;DB;DP=46;ExcessHet=3.9794;FS=5.328;MQ=58.08;MQRankSum=-1.842e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=1.51;SOR=0.274;VQSLOD=-5.067e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,29:46:99:0|1:98196849_G_A:1142,0,1148:98196849
chr2	98196859	rs35904593	T	G	3606.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e-02;DB;DP=51;ExcessHet=3.9794;FS=12.161;MQ=57.21;MQRankSum=-2.822e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=0.867;SOR=0.133;VQSLOD=-7.253e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,32:51:99:0|1:98196849_G_A:1222,0,1175:98196849
chr2	98205924	rs74177639	C	G	2415.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=34;ExcessHet=3.9794;FS=3.918;MQ=47.96;MQRankSum=-3.009e+00;QD=22.79;ReadPosRankSum=-1.309e+00;SOR=2.289;VQSLOD=-2.806e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,9:34:99:274,0,902
chr2	98206188	rs1868445	C	G	9419.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=142;ExcessHet=3.9794;FS=1.303;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=-8.000e-03;SOR=0.799;VQSLOD=6.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,62:142:99:1606,0,2135
chr2	98206282	rs28415903	C	T	2227.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.17;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=58.97;MQRankSum=-1.250e+00;NEGATIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=0.368;SOR=1.396;VQSLOD=-8.751e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,9:25:99:295,0,498
chr2	98206293	rs1814505	G	A	1667.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.317e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=57.89;MQRankSum=-1.570e+00;NEGATIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=1.39;SOR=1.288;VQSLOD=-1.378e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,9:23:99:288,0,490
chr2	98273290	rs11547232	C	T	4457.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780e-01;DB;DP=62;ExcessHet=3.9794;FS=0.612;MQ=59.93;MQRankSum=1.59;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=0.857;SOR=0.641;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,34:62:99:878,0,780
chr2	98273661	rs2290124	A	G	3394.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DB;DP=45;ExcessHet=3.0103;FS=3.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=0.239;SOR=1.095;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,24:45:99:682,0,533
chr2	98274527	rs1042705	G	C	27981.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=320;ExcessHet=3.0103;FS=2.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.27;ReadPosRankSum=0.348;SOR=0.482;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,154:320:99:3978,0,4099
chr2	98276014	rs150112418	CCCTCACCTGCCCTGACCAGAA	C	6993.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DB;DP=75;ExcessHet=3.9794;FS=1.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=-5.940e-01;SOR=0.597;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,37:75:99:1451,0,6901
chr2	98280055	rs55772322	G	A	443.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=5;ExcessHet=3.9794;FS=6.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.00;SOR=3.912;VQSLOD=13.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:75:105,0,75
chr2	98306608	rs12997695	C	A	1199.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.58;ReadPosRankSum=0.340;SOR=1.559;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:57:149,0,57
chr2	98317685	rs11680855	G	A	9242.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=163;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=1.56;SOR=0.720;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,79:163:99:1868,0,1967
chr2	98317771	rs11894651	C	A	8112.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-5.300e-01;SOR=0.740;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1427,0,1306
chr2	98340364	rs6712517	A	C	114.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:120,0,27
chr2	98351654	rs34532595	TG	T	4902.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=122;ExcessHet=6.9897;FS=3.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=6.000e-03;SOR=1.170;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:67,55:122:99:1522,0,1851
chr2	98351986	rs13002912	T	C	3565.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.947e+00;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=59.54;MQRankSum=0.202;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=0.466;SOR=1.565;VQSLOD=0.639;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,18:44:99:523,0,893
chr2	98353847	rs11686881	C	T	1665.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138e+00;DB;DP=31;ExcessHet=6.9897;FS=0.875;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-1.780e-01;SOR=0.559;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:421,0,512
chr2	98354139	rs17488834	G	T	15906.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.462e+00;DB;DP=446;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.750;SOR=0.715;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:217,229:446:99:5381,0,5509
chr2	98354511	rs3192177	G	A	3188.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.480e-01;DB;DP=67;ExcessHet=6.9897;FS=5.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=1.10;SOR=0.451;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,43:67:99:1053,0,608
chr2	98355990	rs11678558	G	A	4057.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.437e+00;DB;DP=109;ExcessHet=6.9897;FS=3.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.970;SOR=0.508;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,62:109:99:1678,0,1420
chr2	98376989	rs3214760	TA	T	1090.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=23;ExcessHet=3.9794;FS=7.728;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.903;SOR=3.056;VQSLOD=4.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,9:23:99:225,0,387
chr2	98377512	rs2044458	A	T	1408.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=-6.140e-01;SOR=0.844;VQSLOD=6.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:636,0,403
chr2	98382886	rs895438	G	A	1867.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=44;ExcessHet=6.9897;FS=6.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-5.900e-02;SOR=1.264;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:550,0,669
chr2	98409046	rs12995673	G	A	4670.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=105;ExcessHet=6.9897;FS=0.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.385;SOR=0.738;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,51:105:99:1434,0,1495
chr2	98409565	rs13032265	T	C	1427.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=26;ExcessHet=6.9897;FS=3.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=-2.310e-01;SOR=0.374;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:378,0,345
chr2	98413781	rs2305143	C	T	495.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.61;ReadPosRankSum=0.930;SOR=1.609;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	98421364	rs17489984	A	G	379.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=1.28;SOR=1.371;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:57:164,0,57
chr2	98427382	rs2278700	T	C	627.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=0.651;SOR=0.557;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:168,0,250
chr2	98443658	rs12104810	C	T	1950.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.840e-01;DB;DP=35;ExcessHet=6.9897;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-5.850e-01;SOR=0.496;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:443,0,581
chr2	98449796	rs6721250	C	T	2792.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=2.093;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:766,69,0
chr2	98451036	.	T	TA	66.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.13;ReadPosRankSum=1.09;SOR=0.223;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,3:7:54:54,0,83
chr2	98460855	rs6543161	G	A	185	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.83;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:28:73,0,28
chr2	98525107	rs1317178	T	C	3805.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=69;ExcessHet=3.9794;FS=7.202;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=1.33;SOR=1.149;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,33:69:99:790,0,921
chr2	98611833	rs2279825	T	C	1262.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=31;ExcessHet=3.9794;FS=4.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.131;SOR=1.375;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,9:31:99:277,0,549
chr2	98611994	rs2279824	G	T	2854.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=56;ExcessHet=3.9794;FS=1.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-5.260e-01;SOR=0.811;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:597,0,752
chr2	98795523	rs1451250	T	C	740.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.87;SOR=4.407;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:377,27,0
chr2	98795792	rs4851884	C	G	4553.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=116;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=-8.390e-01;SOR=0.705;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,50:116:99:1242,0,1597
chr2	98795873	rs11419620	T	TG	11695.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=1.294;VQSLOD=5.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3299,280,0
chr2	98796028	rs4241221	T	A	1607.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.05;SOR=5.031;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr2	98797446	rs11692266	A	T	1370.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=95;ExcessHet=3.0103;FS=0.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.209;SOR=0.833;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,51:95:99:1379,0,1150
chr2	98797744	rs4851890	C	T	2673.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.73;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1110,93,0
chr2	98804314	rs1466156	G	A	1307.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.44;SOR=2.712;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr2	98811075	rs7579916	A	G	3053.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.02;SOR=1.694;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:954,72,0
chr2	98833449	rs62156666	G	C	1767.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.75;MQRankSum=-1.423e+00;NEGATIVE_TRAIN_SITE;QD=32.44;ReadPosRankSum=-1.911e+00;SOR=2.655;VQSLOD=-1.414e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,4:14:99:138,0,1083
chr2	98844575	rs7606220	A	G	2232.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=27;ExcessHet=3.0103;FS=2.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.36;ReadPosRankSum=0.244;SOR=1.879;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:400,0,518
chr2	98844674	rs7601049	C	G	8494.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;DB;DP=98;ExcessHet=3.0103;FS=3.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=0.469;SOR=0.984;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,50:98:99:1220,0,1143
chr2	98844918	rs80013524	G	A	103.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=0.712;SOR=0.693;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:112,0,171
chr2	98846405	rs12712252	A	T	1048.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=5.211;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr2	98853173	rs11889349	G	A	4409.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=74;ExcessHet=3.9794;FS=2.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=-3.090e-01;SOR=0.925;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:1049,0,1007
chr2	98853364	rs13033263	C	A	890.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.26;ReadPosRankSum=-1.200e-01;SOR=1.402;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:98853364_C_A:148,0,297:98853364
chr2	98853373	rs13013876	G	T	815.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.22;ReadPosRankSum=-3.280e-01;SOR=1.528;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:98853364_C_A:114,0,268:98853364
chr2	98862097	rs4851121	A	G	4604.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.181e+00;DB;DP=38;ExcessHet=3.0103;FS=4.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.98;ReadPosRankSum=-7.300e-02;SOR=1.585;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,17:38:99:497,0,649
chr2	98866775	rs6747410	A	G	1581.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.091e+00;DB;DP=133;ExcessHet=3.0103;FS=4.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=1.30;SOR=1.045;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,70:133:99:1590,0,1600
chr2	98872662	rs113487988	C	CT	2468.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=-2.540e-01;SOR=0.781;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,18:29:99:394,0,202
chr2	98887116	rs4851955	G	C	2136.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423e+00;DB;DP=69;ExcessHet=3.9794;FS=3.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=1.29;SOR=0.393;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,42:69:99:1150,0,799
chr2	98928494	rs7587534	G	A	12254.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.270e-01;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=0.655;SOR=0.607;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,76:138:99:2145,0,1661
chr2	98928757	rs2271038	C	T	1406.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702e+00;DB;DP=126;ExcessHet=3.0103;FS=0.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.171;SOR=0.613;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,59:126:99:1415,0,1805
chr2	98928929	rs1466944	A	G	520.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.250e-01;DB;DP=16;ExcessHet=3.9794;FS=7.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=1.43;SOR=0.073;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:280,0,237
chr2	98948224	rs13427344	C	A	1439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.840e-01;DB;DP=63;ExcessHet=3.9794;FS=3.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.862;SOR=0.414;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:706,0,948
chr2	98950659	rs10181000	T	C	112.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,1:4:25:25,0,110
chr2	98950731	rs72350152	CA	C	91.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=59.26;QD=22.79;SOR=3.258;VQSLOD=2.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:103,12,0
chr2	98994414	rs937725	T	C	1883.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=42;ExcessHet=6.9897;FS=4.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-4.740e-01;SOR=1.076;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:535,0,659
chr2	98996985	rs2271039	A	T	620.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.210;SOR=1.255;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:166,0,176
chr2	99156296	rs6734569	G	T	1293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=2.05;SOR=0.687;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:693,0,674
chr2	99168953	rs1181562	T	C	575.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.27;ReadPosRankSum=0.967;SOR=4.174;VQSLOD=14.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr2	99170672	.	A	T	89.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.16;ReadPosRankSum=-2.720e-01;SOR=0.368;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:98:98,0,189
chr2	99219111	.	CA	C	321.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DP=22;ExcessHet=6.9897;FS=0.000;MQ=59.76;MQRankSum=0.00;QD=5.85;ReadPosRankSum=1.45;SOR=0.690;VQSLOD=5.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,6:22:99:103,0,187
chr2	99234586	rs373790267	A	AT	1313.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=58;ExcessHet=6.9897;FS=3.274;MQ=60.00;MQRankSum=0.00;QD=6.77;ReadPosRankSum=-6.890e-01;SOR=0.983;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,22:58:99:365,0,737
chr2	99720267	rs1453563	C	G	484.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=0.957;SOR=1.085;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:56:56,0,151
chr2	99725138	rs6542863	C	T	356.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=-1.579e+00;SOR=1.473;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:106,0,65
chr2	99725223	rs6542864	A	G	1777.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.35;ReadPosRankSum=2.09;SOR=0.631;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:278,0,134
chr2	99725479	rs11396964	A	AT	6729.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=67;ExcessHet=3.9794;FS=0.597;MQ=60.00;MQRankSum=0.00;QD=25.02;ReadPosRankSum=0.528;SOR=0.609;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,39:67:99:1256,0,832
chr2	99725575	rs6733285	T	C	1371.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=10;ExcessHet=3.9794;FS=3.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.49;ReadPosRankSum=0.842;SOR=2.356;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:45:326,0,45
chr2	99726043	rs6733624	A	G	2037.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=3.872;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:569,45,0
chr2	99743419	rs13008171	G	A	2023.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.608;SOR=0.634;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:157,0,329
chr2	99757696	rs76474684	T	C	2475.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=89;ExcessHet=3.9794;FS=0.601;MQ=60.00;MQRankSum=0.00;QD=13.03;ReadPosRankSum=0.757;SOR=0.776;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,47:89:99:1392,0,967
chr2	99764145	.	T	G	54.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.12;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:63,0,34
chr2	99771268	rs2516832	G	C	2235.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DB;DP=19;ExcessHet=3.9794;FS=8.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.88;ReadPosRankSum=0.248;SOR=1.971;VQSLOD=19.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,8:19:99:0|1:99771268_G_C:303,0,804:99771268
chr2	99771272	rs2632261	C	T	2290.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360e-01;DB;DP=22;ExcessHet=3.9794;FS=6.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=-3.300e-01;SOR=1.675;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,10:22:99:0|1:99771268_G_C:355,0,832:99771268
chr2	99771533	rs2516834	C	T	7029.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DB;DP=92;ExcessHet=3.9794;FS=3.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=-1.130e-01;SOR=0.937;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,49:92:99:1320,0,1022
chr2	99771590	rs2632260	G	T	4317.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=54;ExcessHet=3.9794;FS=3.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=0.391;SOR=0.998;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:712,0,758
chr2	99771723	.	A	C	230.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.620e-01;DP=20;ExcessHet=3.0103;FS=4.481;MQ=60.00;MQRankSum=0.00;QD=11.51;ReadPosRankSum=0.541;SOR=0.148;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:239,0,367
chr2	99778985	rs2632277	T	C	5306.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=90;ExcessHet=3.9794;FS=2.294;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=0.449;SOR=0.728;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,36:90:99:947,0,1351
chr2	99779131	rs2516835	T	C	5435.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.370e-01;DB;DP=85;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.245;SOR=0.664;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,52:85:99:1430,0,887
chr2	99802820	rs6757661	A	G	964.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=13;ExcessHet=3.9794;FS=4.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=-6.220e-01;SOR=1.751;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:242,0,137
chr2	99804642	rs10865030	T	C	5280.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=75;ExcessHet=3.9794;FS=5.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=0.812;SOR=1.086;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,36:75:99:902,0,992
chr2	99811894	rs7605843	C	T	5429.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155e+00;DB;DP=40;ExcessHet=3.9794;FS=9.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=-4.470e-01;SOR=0.237;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:490,0,654
chr2	99812070	rs1044575	G	A	8591.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e+00;DB;DP=133;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=0.669;SOR=0.733;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,68:133:99:1550,0,1736
chr2	99859954	rs201611834	C	CAGAT	585.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=6.9897;FS=5.656;MQ=60.00;MQRankSum=0.00;QD=25.46;ReadPosRankSum=-7.650e-01;SOR=0.061;VQSLOD=4.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:37:155,0,37
chr2	99918077	rs74177686	A	G	537.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=10;ExcessHet=3.9794;FS=6.315;MQ=44.55;MQRankSum=-1.282e+00;QD=15.37;ReadPosRankSum=1.45;SOR=2.833;VQSLOD=-4.912e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:45:45,0,279
chr2	99918180	rs10688800	C	CAA	2237.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=47;ExcessHet=1.5490;FS=1.116;MQ=48.74;MQRankSum=-5.469e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=0.861;SOR=1.034;VQSLOD=0.258;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,19:47:99:578,0,890
chr2	99922967	rs6722617	C	T	429.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=1.04;SOR=2.049;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:34:34,0,37
chr2	99923088	rs13003899	T	C	2437.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=24;ExcessHet=3.9794;FS=2.607;MQ=52.01;MQRankSum=-1.299e+00;NEGATIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=0.087;SOR=0.413;VQSLOD=-2.343e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:317,0,383
chr2	99938301	rs13017871	C	T	449.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=50.84;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.14;ReadPosRankSum=0.00;SOR=0.914;VQSLOD=-1.080e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:73,0,71
chr2	99954276	rs11371270	C	CT	253.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=-1.383e+00;SOR=0.859;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,69
chr2	99954636	rs11326784	GT	G	3455.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=60;ExcessHet=3.9794;FS=1.252;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=0.511;SOR=0.837;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,31:60:99:749,0,659
chr2	99954735	rs4850901	C	A	4775.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541e+00;DB;DP=134;ExcessHet=1.5490;FS=2.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=1.53;SOR=0.868;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,64:134:99:1514,0,1805
chr2	99977162	rs60489297	TAGGAATGTAA	T	377.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.31;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,236
chr2	99988453	rs11320097	CA	C	594.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540e+00;DB;DP=14;ExcessHet=1.5490;FS=2.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=0.00;SOR=0.249;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:199,0,192
chr2	99992822	rs7558074	A	C	992.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.670e-01;DB;DP=16;ExcessHet=1.5490;FS=3.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=0.067;SOR=1.432;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,3:16:41:41,0,388
chr2	99993176	rs10179343	G	A	322.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.9794;FS=7.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.949;SOR=0.045;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,147
chr2	99995804	rs1376443	T	C	5558.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412e+00;DB;DP=122;ExcessHet=1.5490;FS=1.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=-2.740e-01;SOR=0.579;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,64:122:99:1391,0,1324
chr2	99998561	rs2290256	C	T	1419.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=23;ExcessHet=1.5490;FS=3.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=-1.725e+00;SOR=1.565;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:308,0,297
chr2	99999483	rs148544035	TTATTGTGCTTCACTA	T	225.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.77;ReadPosRankSum=0.464;SOR=0.169;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:234,0,385
chr2	99999517	rs146864457	T	TTG	148.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.48;ReadPosRankSum=-2.310e-01;SOR=0.892;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:157,0,124
chr2	100006620	rs10187843	G	T	1824.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.370e-01;DB;DP=36;ExcessHet=1.5490;FS=3.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-8.560e-01;SOR=1.329;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:469,0,555
chr2	100006904	rs58344028	T	TA	1391.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DB;DP=78;ExcessHet=3.9794;FS=1.278;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=1.30;SOR=0.839;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,31:78:99:738,0,1165
chr2	100015724	.	C	T	688.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-02;DP=64;ExcessHet=3.0103;FS=0.000;MQ=59.81;MQRankSum=-9.690e-01;QD=10.75;ReadPosRankSum=1.64;SOR=0.578;VQSLOD=-3.001e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,32:64:99:697,0,768
chr2	100017906	.	C	CAA	370.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.440e-01;DP=19;ExcessHet=6.9897;FS=1.323;MQ=60.00;MQRankSum=0.00;QD=5.22;ReadPosRankSum=-7.140e-01;SOR=0.388;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,5:19:99:115,0,394
chr2	100019496	rs2305354	A	G	2582.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=51;ExcessHet=1.5490;FS=3.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=0.067;SOR=1.138;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,30:51:99:775,0,432
chr2	100022617	rs13394927	G	A	1030.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=27;ExcessHet=3.9794;FS=2.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=-7.040e-01;SOR=0.385;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:549,0,347
chr2	100029106	rs2242037	T	C	778.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=0.137;SOR=1.179;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:219,0,170
chr2	100050740	rs13409359	A	C	890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DB;DP=56;ExcessHet=3.9794;FS=0.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=1.04;SOR=0.804;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:562,0,840
chr2	100050866	.	G	C	1111.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.92;ReadPosRankSum=-8.130e-01;SOR=0.685;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,36:62:99:1120,0,616
chr2	100052594	rs28382894	A	AGTTT	386.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=4.615;VQSLOD=5.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	100055158	rs3087399	T	C	3129.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840e-01;DB;DP=126;ExcessHet=3.9794;FS=3.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.159;SOR=0.697;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,65:126:99:1608,0,1479
chr2	100055506	rs3087386	A	G	3026.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.27;ReadPosRankSum=0.847;SOR=0.758;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,28:48:99:941,0,611
chr2	100081323	rs28369943	C	T	2793.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.531e+00;DB;DP=68;ExcessHet=1.5490;FS=1.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.39;ReadPosRankSum=-8.650e-01;SOR=0.911;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,34:68:99:731,0,852
chr2	100081561	rs28369942	A	AAAGTC	970.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.55;SOR=4.804;VQSLOD=6.21;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	100218080	rs4851214	G	A	460.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=2.64;SOR=0.473;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:336,0,308
chr2	100288931	rs4851222	G	A	1924.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=61;ExcessHet=6.9897;FS=1.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.164;SOR=0.555;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:635,0,862
chr2	100343557	rs4851223	C	T	8887.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=0.707;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2600,247,0
chr2	100454072	rs5832886	C	CT	3742.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.44;SOR=1.085;VQSLOD=4.04;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1911,144,0
chr2	100906570	rs139366121	A	AAAAT	290.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=1.38;SOR=1.426;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:100906570_A_AAAAT:60,0,330:100906570
chr2	100906578	rs7599212	C	T	260.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.69;ReadPosRankSum=0.265;SOR=0.368;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,9:12:94:1|0:100906570_A_AAAAT:269,0,94:100906570
chr2	100910578	rs4850925	C	T	1365.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=73;ExcessHet=3.0103;FS=3.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=0.886;SOR=0.280;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,43:73:99:1374,0,821
chr2	100915629	rs4851286	T	C	1951.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=39;ExcessHet=1.5490;FS=2.158;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=0.047;SOR=0.451;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1276,117,0
chr2	100915772	rs4851287	A	G	1570.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.408e+00;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=2.25;SOR=0.806;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:992,90,0
chr2	100916051	rs2033749	T	C	464.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.202;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-2.042e+00;SOR=1.314;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:301,24,0
chr2	100916306	rs2033748	A	G	1263.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DB;DP=23;ExcessHet=1.5490;FS=1.125;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.41;ReadPosRankSum=0.258;SOR=0.532;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:100916306_A_G:760,69,0:100916306
chr2	100916315	rs11123823	A	G	678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=22;ExcessHet=3.9794;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.023;SOR=0.965;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,10:22:99:0|1:100916306_A_G:233,0,231:100916306
chr2	100917109	rs13006224	C	T	2966.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=104;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=1.37;SOR=0.666;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,59:104:99:1456,0,904
chr2	100938226	rs74177694	G	C	359.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.30;ReadPosRankSum=0.286;SOR=0.610;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:266,0,240
chr2	100938328	rs74177695	T	C	64.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.18;ReadPosRankSum=1.01;SOR=1.179;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:63:73,0,63
chr2	100938481	rs74177696	C	G	348.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=8;ExcessHet=3.9794;FS=1.324;MQ=60.00;MQRankSum=0.00;QD=9.95;ReadPosRankSum=0.414;SOR=0.960;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:35:155,0,35
chr2	100986964	rs1437971	A	C	1507.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=28;ExcessHet=1.5490;FS=2.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=0.492;SOR=1.140;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1035,84,0
chr2	101009600	rs1530030	G	A	698.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=14;ExcessHet=3.9794;FS=5.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=1.08;SOR=0.105;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:59:337,0,59
chr2	101010082	rs3748930	G	C	3615.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.928e+00;DB;DP=129;ExcessHet=3.9794;FS=3.250;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=2.13;SOR=0.522;VQSLOD=6.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,63:129:99:1500,0,1841
chr2	101011724	rs2241811	C	T	532.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=-1.560e-01;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:377,30,0
chr2	101011877	rs2241810	T	C	2038.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855e+00;DB;DP=70;ExcessHet=3.9794;FS=1.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.784;SOR=0.557;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,41:70:99:1104,0,800
chr2	101014247	rs4149517	C	A	1288.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=-1.269e+00;SOR=0.407;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:981,77,0
chr2	101014363	rs2241809	C	T	2046.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=81;ExcessHet=3.9794;FS=0.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=1.38;SOR=0.768;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,36:81:99:987,0,1248
chr2	101019237	rs78422497	C	T	524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033e+00;DB;DP=33;ExcessHet=3.0103;FS=6.488;MQ=59.97;MQRankSum=-9.100e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-1.766e+00;SOR=2.093;VQSLOD=-5.193e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,17:33:99:533,0,453
chr2	101022886	rs4149512	C	T	527.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DB;DP=13;ExcessHet=3.9794;FS=1.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.06;SOR=1.179;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:188,0,160
chr2	101022963	rs7571659	A	G	1015.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.82;DB;DP=63;ExcessHet=3.0103;FS=7.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=0.186;SOR=1.768;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1024,0,783
chr2	101031561	rs3828193	G	T	575.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=20;ExcessHet=3.9794;FS=1.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=1.57;SOR=1.082;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:208,0,315
chr2	101033697	rs4149505	G	A	478.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.00;SOR=0.631;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:59:180,0,59
chr2	101096960	rs1519654	C	T	6122.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.699e+00;DB;DP=87;ExcessHet=3.0103;FS=4.938;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=1.85;SOR=1.197;VQSLOD=6.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2707,259,0
chr2	101126124	rs1829479	T	A	10995.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.04;SOR=2.431;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2916,262,0
chr2	101179122	rs6746622	T	G	483.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.86;SOR=5.136;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr2	101179341	rs2970988	A	G	4179.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=0.780;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,48:48:99:1|1:101179341_A_G:2129,144,0:101179341
chr2	101179342	rs2309848	G	A	4179.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.57;SOR=0.780;VQSLOD=19.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,48:48:99:1|1:101179341_A_G:2129,144,0:101179341
chr2	101186088	rs1052117	C	T	8760.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=1.609;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4055,351,0
chr2	101188373	rs138885839	C	CCTGTGTATGAGTGA	6848.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.49;SOR=2.849;VQSLOD=4.26;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2772,186,0
chr2	101520972	rs5832941	A	AT	833.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.79;SOR=4.615;VQSLOD=5.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:404,30,0
chr2	101521173	rs57350721	ATT	A,AT	1152.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.945;DB;DP=26;ExcessHet=3.0103;FS=0.959;MQ=59.96;MQRankSum=0.00;QD=14.97;ReadPosRankSum=0.610;SOR=0.577;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,11,9:26:75:383,75,234,129,0,175
chr2	101541798	rs356651	C	T	5134.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.471;DB;DP=68;ExcessHet=3.0103;FS=2.938;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=-2.182e+00;SOR=0.968;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2219,204,0
chr2	101549761	rs3754674	G	C	183.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:133,0,66
chr2	101554036	rs13017718	C	T	333.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.634;SOR=0.368;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:342,0,305
chr2	101564628	rs10207725	A	G	5031.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DB;DP=92;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=0.234;SOR=0.716;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,45:92:99:1222,0,1259
chr2	101566070	rs3739005	C	T	2694.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.08;DB;DP=49;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=0.634;SOR=0.614;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,22:49:99:674,0,701
chr2	101566184	rs3739006	A	G	576.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.080e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=1.01;SOR=2.419;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,142
chr2	101566234	rs3820787	A	G	551.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.38;SOR=5.421;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr2	101581246	rs7581886	C	T	5628.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.70;SOR=1.756;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1673,146,0
chr2	101581934	rs10711978	CA	C	1597.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DB;DP=23;ExcessHet=3.9794;FS=4.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-9.300e-02;SOR=1.536;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,13:23:99:303,0,216
chr2	101581976	rs4851392	A	G	4372.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.49;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=0.908;SOR=0.812;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1636,144,0
chr2	101591304	rs2305160	A	G	6081.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=120;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=-9.920e-01;SOR=0.707;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,56:120:99:1185,0,1415
chr2	101598494	rs6719037	T	C	1587.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=5.892;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
chr2	101609827	rs9223	C	T	7920.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;DB;DP=185;ExcessHet=1.5490;FS=1.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=-4.230e-01;SOR=0.597;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:5504,555,0
chr2	101619283	rs2278724	C	G	14840.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=0.936;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4374,419,0
chr2	101619321	rs2278723	T	C	12620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.210;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=-1.157e+00;SOR=0.713;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4694,450,0
chr2	101620856	rs34386800	TA	T	966.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e-02;DB;DP=52;ExcessHet=3.9794;FS=1.628;MQ=60.00;MQRankSum=0.00;QD=9.11;ReadPosRankSum=1.42;SOR=0.540;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,6:52:11:11,0,1070
chr2	101622728	rs10934	C	T	3562.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.098e+00;DB;DP=76;ExcessHet=1.5490;FS=2.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=-9.200e-02;SOR=0.534;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2351,226,0
chr2	101624471	rs746924	T	C	13817.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.409;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=-3.830e-01;SOR=0.757;VQSLOD=6.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4812,432,0
chr2	101635538	rs13007048	C	T	873.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.346;DB;DP=23;ExcessHet=1.5490;FS=6.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=1.13;SOR=1.572;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,22:23:26:678,26,0
chr2	101638888	rs3739014	A	G	8982.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.306;DB;DP=95;ExcessHet=3.0103;FS=5.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=0.093;SOR=0.419;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2937,285,0
chr2	101644855	rs11683877	G	A	6173.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.441e+00;DB;DP=132;ExcessHet=1.5490;FS=1.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=0.637;SOR=0.793;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4381,396,0
chr2	101645856	.	T	TA	103.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=9;ExcessHet=6.9897;FS=2.793;MQ=60.00;MQRankSum=0.00;QD=4.52;ReadPosRankSum=0.524;SOR=1.552;VQSLOD=5.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:47:47,0,121
chr2	101646359	rs12472882	G	C	1970.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.23;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.175;SOR=0.564;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1332,105,0
chr2	101652732	rs4850957	C	T	2221.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.52;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-7.580e-01;SOR=0.726;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1671,144,0
chr2	101652797	rs6543005	T	C	1610.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.23;SOR=5.330;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:579,48,0
chr2	101655244	rs62152953	C	T	159.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-1.770e-01;SOR=0.551;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:168,0,182
chr2	101656726	rs2289953	T	C	7551.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e-01;DB;DP=97;ExcessHet=3.0103;FS=0.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=-9.860e-01;SOR=0.649;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2932,291,0
chr2	101670928	rs9677214	C	A	378.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=2.17;SOR=0.784;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:218,0,186
chr2	101670937	rs11675221	C	T	246.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.70;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:131,0,282
chr2	101670955	rs11675224	C	T	212.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.105;SOR=0.836;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:128,0,204
chr2	101675808	rs7572457	A	G	784.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.493;SOR=0.495;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:332,0,336
chr2	101767893	rs190367292	C	A	63.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.86;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:72,0,61
chr2	101869588	rs2272320	G	T	7797.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=176;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-4.120e-01;SOR=0.746;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,95:176:99:2357,0,2007
chr2	101870073	rs874272	T	C	943.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=51;ExcessHet=3.0103;FS=1.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=0.209;SOR=0.439;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:952,0,717
chr2	101874442	rs6757365	C	T	2528.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544e+00;DB;DP=67;ExcessHet=6.9897;FS=3.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-7.710e-01;SOR=0.927;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,24:67:99:572,0,1125
chr2	101878882	rs74642933	C	T	691.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e-02;DB;DP=10;ExcessHet=6.9897;FS=2.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-1.050e-01;SOR=0.313;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:93:93,0,224
chr2	101881549	rs3768995	A	T	820.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.260e-01;DB;DP=17;ExcessHet=6.9897;FS=4.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.536;SOR=0.260;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:205,0,196
chr2	101889306	rs750783	A	G	1264.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=28;ExcessHet=6.9897;FS=4.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=0.264;SOR=0.276;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,18:28:99:554,0,250
chr2	101889938	.	CT	C	414.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DP=21;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=5.61;ReadPosRankSum=-6.420e-01;SOR=0.660;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:21:99:138,0,177
chr2	101898412	rs13151	G	C	3217.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=57;ExcessHet=3.9794;FS=2.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.202;SOR=0.554;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1710,171,0
chr2	101911385	rs3828194	A	G	1076.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860e+00;DB;DP=42;ExcessHet=6.9897;FS=0.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=0.205;SOR=0.544;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:335,0,756
chr2	101925026	rs11123868	T	C	11666.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.710e-01;DB;DP=270;ExcessHet=6.9897;FS=0.570;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-5.210e-01;SOR=0.741;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,134:270:99:3395,0,3303
chr2	101925737	.	GAA	G	74.59	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.86;SOR=2.833;VQSLOD=4.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr2	101967346	rs6543032	C	T	5885.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.83;SOR=2.093;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1937,177,0
chr2	101971618	rs6753727	T	C	1663.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.44;SOR=3.865;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:585,48,0
chr2	101972027	rs6543034	A	G	254.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.32;SOR=3.912;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:101972027_A_G:90,6,0:101972027
chr2	101972030	rs6543035	T	G	254.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.31;SOR=3.912;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:101972027_A_G:90,6,0:101972027
chr2	102014326	.	CT	C	44.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.21;ReadPosRankSum=0.520;SOR=0.465;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:53:53,0,372
chr2	102018620	rs4430974	A	T	1180.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.92;ReadPosRankSum=-4.960e-01;SOR=2.494;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:509,36,0
chr2	102018908	rs2175968	A	G	10748.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.010e-01;DB;DP=151;ExcessHet=3.0103;FS=3.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.68;ReadPosRankSum=-7.410e-01;SOR=0.465;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4419,452,0
chr2	102026879	.	A	ACACT	1120.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.729;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.97;ReadPosRankSum=0.078;SOR=2.584;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:33:429,33,0
chr2	102031176	rs4851434	A	G	4515.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=3.855;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1176,87,0
chr2	102031489	rs4851435	C	G	3709.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.620e+00;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-1.800e-01;SOR=0.633;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1534,144,0
chr2	102033851	rs11397297	T	TA	916.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.28;SOR=4.003;VQSLOD=6.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:364,27,0
chr2	102033867	rs6761866	T	C	1013.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=3.767;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:344,33,0
chr2	102035192	rs6709913	C	T	4464.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.32;SOR=0.785;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1324,120,0
chr2	102035760	rs958790	G	T	305.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.67;SOR=4.407;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	102038849	rs4851436	T	A	10377.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=31.26;SOR=0.889;VQSLOD=3.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3102,300,0
chr2	102045328	rs6543047	C	T	3162.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=26;ExcessHet=3.0103;FS=2.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.24;ReadPosRankSum=0.065;SOR=1.357;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:951,78,0
chr2	102045709	rs6543048	C	T	1610.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.79;SOR=7.328;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:424,30,0
chr2	102066878	rs4851448	A	T	1448.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=4.461;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr2	102067083	rs7585228	T	C	5805.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=0.704;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1659,159,0
chr2	102083183	rs4851455	T	C	1349.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;DB;DP=22;ExcessHet=3.9794;FS=0.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=0.361;SOR=0.951;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,20:22:17:563,17,0
chr2	102314437	rs13430711	T	C	4358.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DB;DP=76;ExcessHet=3.0103;FS=6.803;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=-4.580e-01;SOR=1.388;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,32:76:99:822,0,1122
chr2	102314633	.	G	GGGCAGCC	1762.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060e-01;DP=46;ExcessHet=3.9794;FS=2.738;MQ=60.00;MQRankSum=0.00;QD=21.49;ReadPosRankSum=-9.710e-01;SOR=1.174;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,25:46:99:984,0,1325
chr2	102315057	rs1567385	A	G	869.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=2.55;SOR=0.534;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:442,0,336
chr2	102413823	rs368087782	C	T	730.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=51;ExcessHet=3.0103;FS=3.978;MQ=60.00;MQRankSum=0.00;QD=14.32;ReadPosRankSum=1.46;SOR=1.333;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:739,0,630
chr2	102440723	rs7601576	G	A	272.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=1.98;SOR=0.892;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	102483883	rs17745869	T	G	269.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-4.370e-01;SOR=0.818;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:170,0,225
chr2	102501891	rs57584884	A	G	955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=32;ExcessHet=3.9794;FS=10.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.00;SOR=0.066;VQSLOD=18.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,20:32:99:599,0,349
chr2	102503486	rs71925785	CA	C	268.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DB;DP=14;ExcessHet=6.9897;FS=2.161;MQ=59.57;MQRankSum=0.00;QD=7.91;ReadPosRankSum=0.391;SOR=1.493;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:14:61:113,0,61
chr2	102625321	rs10718453	CA	C	98.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.32;MQRankSum=0.00;QD=8.95;ReadPosRankSum=1.15;SOR=1.270;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:9:43,0,9
chr2	102632582	rs3819369	T	A	1757.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=32;ExcessHet=3.9794;FS=2.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=1.52;SOR=1.140;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:332,0,567
chr2	102640871	rs3218974	A	G	544.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.217;SOR=0.395;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:289,0,448
chr2	102774054	rs2287047	G	A	2837.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.302e+00;DB;DP=57;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-6.900e-01;SOR=0.723;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,33:57:99:839,0,628
chr2	102782433	rs997049	T	A	509.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.313e+00;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-1.357e+00;SOR=0.527;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:518,0,569
chr2	102785158	rs3213735	G	T	1260.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264e+00;DB;DP=31;ExcessHet=6.9897;FS=11.439;MQ=59.87;MQRankSum=0.00;QD=11.78;ReadPosRankSum=-1.501e+00;SOR=0.201;VQSLOD=1.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:31:99:405,0,438
chr2	102788125	rs3917304	G	T	507.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.525;SOR=0.922;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:132,0,187
chr2	102788409	rs2041747	G	A	7991.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=1.676;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2341,222,0
chr2	102788491	.	CTT	C	297.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=6.9897;FS=0.000;MQ=59.74;MQRankSum=0.00;QD=19.81;ReadPosRankSum=0.524;SOR=1.863;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:11:50,0,11
chr2	102789357	rs72820135	T	A	273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:282,0,177
chr2	102792760	rs3917318	A	G	488.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=19;ExcessHet=6.9897;FS=4.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-1.000e-03;SOR=0.184;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:87:87,0,493
chr2	102793533	rs3917324	C	G	64.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:73,0,30
chr2	102804538	rs144678772	A	AACC	5478.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.175e+00;DB;DP=74;ExcessHet=1.5490;FS=4.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.23;ReadPosRankSum=-5.210e-01;SOR=0.208;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3296,222,0
chr2	102805911	rs55948744	T	G	205.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=1.28;SOR=1.085;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,141
chr2	102808683	rs3213734	G	A	222.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.786;SOR=0.321;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:61:61,0,178
chr2	102817833	rs2302624	A	G	190.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=-1.068e+00;SOR=1.609;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:58:199,0,58
chr2	102817954	rs2302623	A	T	652.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=47;ExcessHet=3.0103;FS=1.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.937;SOR=1.154;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:661,0,641
chr2	102828378	rs138145179	A	ATT	242.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.64;ReadPosRankSum=1.14;SOR=0.368;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:251,0,152
chr2	102828597	rs150242167	C	G	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952e+00;DB;DP=44;ExcessHet=3.0103;FS=1.238;MQ=60.00;MQRankSum=0.00;QD=16.28;ReadPosRankSum=3.51;SOR=0.817;VQSLOD=20.25;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,29:44:99:725,0,395
chr2	102828768	rs1922290	G	C	145.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-1.350e-01;SOR=0.330;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:95:154,0,95
chr2	102835706	rs2241130	T	C	950.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=20;ExcessHet=3.9794;FS=2.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=1.89;SOR=1.493;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:428,0,226
chr2	102836665	rs17026825	A	T	507.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=1.07;SOR=1.714;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:120,0,329
chr2	102842467	rs2302620	T	C	2864.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=103;ExcessHet=3.9794;FS=0.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.718;SOR=0.614;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,45:103:99:948,0,1496
chr2	102851708	rs2302612	T	C	1327.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188e+00;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-5.740e-01;SOR=0.744;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:655,0,707
chr2	102954653	rs13431828	C	T	2345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=89;ExcessHet=3.9794;FS=1.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-3.180e-01;SOR=0.786;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,29:89:99:651,0,1455
chr2	102955468	rs1041973	C	A	3451.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=73;ExcessHet=1.5490;FS=0.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=-5.000e-02;SOR=0.837;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,37:73:99:913,0,854
chr2	102957348	rs10173081	C	T	1955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=53;ExcessHet=3.9794;FS=2.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=1.63;SOR=0.437;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,30:53:99:807,0,648
chr2	102957532	rs3732129	T	C	319.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.68;SOR=1.179;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:336,24,0
chr2	102957628	rs201528268	C	CT	540.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=25;ExcessHet=3.9794;FS=0.846;MQ=59.92;MQRankSum=0.00;QD=9.16;ReadPosRankSum=0.305;SOR=0.867;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,10:25:99:170,0,313
chr2	102957716	rs1420101	C	T	2228.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DB;DP=82;ExcessHet=3.9794;FS=0.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=1.08;SOR=0.750;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1014,0,935
chr2	102960007	rs12905	G	A	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=1.87;SOR=0.602;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:324,0,358
chr2	102967844	rs11123923	C	A	262.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.921e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.50;ReadPosRankSum=1.41;SOR=0.818;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	102967928	rs4988955	A	G	1365.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=33;ExcessHet=3.9794;FS=1.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=1.37;SOR=1.186;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:478,0,616
chr2	102968007	rs4988956	G	A	3367.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.677e+00;DB;DP=121;ExcessHet=3.9794;FS=1.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.10;SOR=0.802;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,50:121:99:1299,0,2046
chr2	102968075	rs4988957	T	C	6109.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=249;ExcessHet=3.9794;FS=1.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.344;SOR=0.824;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:132,117:249:99:2810,0,2982
chr2	102968211	rs10192036	C	A	5937.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=161;ExcessHet=3.9794;FS=2.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.94;ReadPosRankSum=1.30;SOR=0.854;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:90,71:161:99:0|1:102968211_C_A:2706,0,3500:102968211
chr2	102968212	rs10204137	A	G	5937.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=160;ExcessHet=3.9794;FS=1.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=1.17;SOR=0.790;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:89,71:160:99:0|1:102968211_C_A:2706,0,3500:102968211
chr2	102968285	rs4988958	T	C	2005.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.440;SOR=0.688;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,28:64:99:816,0,1161
chr2	102968356	rs10192157	C	T	892.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=31;ExcessHet=3.9794;FS=1.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-4.300e-01;SOR=0.968;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,9:31:99:0|1:102968356_C_T:343,0,899:102968356
chr2	102968362	rs10206753	T	C	862.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-01;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-1.340e-01;SOR=0.551;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,9:29:99:0|1:102968356_C_T:349,0,837:102968356
chr2	102979028	rs2287037	C	T	1502.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=55;ExcessHet=3.9794;FS=4.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.179;SOR=0.352;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:765,0,696
chr2	102984279	rs1420098	T	C	938.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=34;ExcessHet=3.9794;FS=3.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-4.790e-01;SOR=1.315;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,11:34:99:285,0,706
chr2	102984624	rs1362348	C	G	603.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DB;DP=8;ExcessHet=3.9794;FS=2.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=0.272;SOR=0.180;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:139,0,119
chr2	102984671	rs1882348	T	A	183.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.651;SOR=0.340;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,73
chr2	102984684	rs1558627	G	A	473.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=5.136;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	102990648	rs17027029	G	C	457.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=16;ExcessHet=3.9794;FS=7.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-9.100e-01;SOR=0.136;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:70:70,0,319
chr2	102997884	rs3213733	C	A	270.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=1.15;SOR=0.804;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:98,0,29
chr2	102998279	rs3213732	A	G	1652.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=23;ExcessHet=1.5490;FS=2.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=0.129;SOR=0.382;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:479,0,208
chr2	103001402	rs1035130	C	T	838.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.99;DB;DP=86;ExcessHet=3.0103;FS=4.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=1.62;SOR=1.204;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,35:86:99:847,0,1038
chr2	103006387	rs4851570	A	G	629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=-6.930e-01;SOR=0.604;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:638,0,582
chr2	103006448	rs6749014	C	T	2191.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=60;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=-1.445e+00;SOR=0.737;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,28:60:99:761,0,811
chr2	103010912	rs1420096	C	T	2163.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648e+00;DB;DP=35;ExcessHet=1.5490;FS=2.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=0.975;SOR=1.054;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:403,0,444
chr2	103039584	rs3817465	A	T	1345.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=4.921;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:561,45,0
chr2	103039873	rs2272127	C	G	1057.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.999;SOR=0.765;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:567,0,557
chr2	103039929	rs2272128	G	A	1140.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=0.102;SOR=3.981;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,16:17:9:613,9,0
chr2	103040177	rs6543133	A	T	189.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=-1.383e+00;SOR=1.609;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:103040177_A_T:78,0,78:103040177
chr2	103040182	rs9807934	T	G	189.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.64;ReadPosRankSum=1.15;SOR=1.179;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:103040177_A_T:78,0,78:103040177
chr2	103040247	rs11377261	T	TG	1671.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.87;SOR=4.680;VQSLOD=6.05;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:54:1|1:103040247_T_TG:791,54,0:103040247
chr2	103040249	rs2272129	C	T	1671.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=26.19;SOR=5.031;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:103040247_T_TG:791,54,0:103040247
chr2	103040945	rs887972	G	A	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.570e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=-1.450e-01;SOR=0.425;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:423,0,390
chr2	103049074	rs2310300	A	G	364.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=11;ExcessHet=1.5490;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=0.199;SOR=2.147;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:88:88,0,271
chr2	103057892	rs11465702	A	G	1131.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e-01;DB;DP=43;ExcessHet=3.9794;FS=1.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.042;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:616,0,625
chr2	103059613	rs1558651	A	G	6506.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.20;SOR=0.892;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1657,147,0
chr2	103063240	rs11465721	T	G	337.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.78;SOR=3.056;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
chr2	103063255	.	C	CA	98.38	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.94;ReadPosRankSum=-1.890e-01;SOR=0.399;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,4:5:5:78,5,0
chr2	103063369	rs6708413	G	A	1656.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=2.078;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:888,78,0
chr2	103063520	rs11465723	G	A	2739.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426e+00;DB;DP=107;ExcessHet=3.9794;FS=3.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-1.231e+00;SOR=0.473;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,57:107:99:1423,0,1405
chr2	103068787	rs7559479	G	A	392.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.68;SOR=4.977;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:244,21,0
chr2	103068834	rs7603250	T	A	183.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=3.611;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr2	103090127	rs17027255	C	T	347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=1.07;SOR=1.329;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,10:12:43:356,0,43
chr2	103095404	rs11692304	G	A	6399.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=182;ExcessHet=6.9897;FS=1.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-2.620e-01;SOR=0.794;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,99:182:99:2502,0,1975
chr2	103120179	rs7575867	C	T	1204.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387e+00;DB;DP=96;ExcessHet=3.0103;FS=4.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=1.18;SOR=1.172;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,44:96:99:1213,0,1494
chr2	103120232	rs2075188	G	A	5472.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.597e+00;DB;DP=52;ExcessHet=3.0103;FS=3.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=0.401;SOR=1.059;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1766,155,0
chr2	103120311	rs2075187	G	A	1952.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.669;DB;DP=13;ExcessHet=3.0103;FS=3.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=-2.810e-01;SOR=1.626;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:522,39,0
chr2	103120356	rs4851015	C	T	960.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.576e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=-4.500e-01;SOR=0.990;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:374,27,0
chr2	103120400	rs4851016	C	T	631.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=-7.550e-01;SOR=1.802;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr2	103121533	rs146840523	TAGGG	T	189.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=0.231;SOR=0.941;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:198,0,153
chr2	103121536	rs7605606	G	A,*	656.68	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.575e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.412;SOR=0.627;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,4,5:9:99:366,210,198,161,0,153
chr2	103121654	rs72825956	G	A	394.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DB;DP=49;ExcessHet=3.0103;FS=1.226;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=-3.950e-01;SOR=1.022;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,16:49:99:403,0,838
chr2	103125138	rs6751949	G	A	288.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.21;SOR=4.407;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
chr2	103125182	rs6724322	C	T	783.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.35;ReadPosRankSum=0.198;SOR=3.014;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr2	103125457	rs6739301	A	G	3411.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.213;DB;DP=38;ExcessHet=3.9794;FS=1.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=-3.950e-01;SOR=0.518;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:103125457_A_G:1682,117,0:103125457
chr2	103125466	rs6742381	T	C	3512.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.920e-01;DB;DP=38;ExcessHet=3.9794;FS=0.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-8.250e-01;SOR=0.614;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:103125457_A_G:1682,117,0:103125457
chr2	103125632	rs4851607	C	T	571.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.09;ReadPosRankSum=2.19;SOR=2.419;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr2	103128866	rs4851609	T	C	2098.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.029e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=0.388;SOR=0.644;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:586,66,0
chr2	103136309	rs1403550	T	C	6204.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.530e-01;DB;DP=86;ExcessHet=3.0103;FS=2.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=0.549;SOR=0.456;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2388,257,0
chr2	103136446	rs1403551	T	G	2398.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;DB;DP=17;ExcessHet=3.0103;FS=6.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=-7.580e-01;SOR=1.967;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:617,51,0
chr2	103141447	rs2015478	A	G	2921.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.380e-01;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=1.09;SOR=0.665;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,35:61:99:923,0,730
chr2	103141651	rs1024798	G	C	1415.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=15;ExcessHet=3.0103;FS=1.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=-1.673e+00;SOR=1.402;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:614,45,0
chr2	103142491	rs6712638	T	C	415.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=7.782;MQ=60.00;MQRankSum=0.00;QD=34.60;ReadPosRankSum=0.00;SOR=4.804;VQSLOD=11.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr2	103142495	rs112922328	C	T	65.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.34;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:74,0,70
chr2	103142994	rs7576324	G	A	242.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=1.26;SOR=0.301;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:251,0,246
chr2	103149100	rs1014286	G	A	4117.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=53;ExcessHet=3.9794;FS=4.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=0.241;SOR=1.076;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:674,0,741
chr2	103149162	rs2008159	A	G	2992.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=34;ExcessHet=3.9794;FS=11.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=1.41;SOR=1.514;VQSLOD=17.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:359,0,487
chr2	103149182	rs2008157	A	G	2907.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=36;ExcessHet=3.9794;FS=2.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=-4.130e-01;SOR=0.921;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,13:36:99:365,0,636
chr2	103149210	rs74560841	G	A	686.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.470e-01;DB;DP=41;ExcessHet=3.0103;FS=1.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-7.490e-01;SOR=1.047;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:695,0,447
chr2	103149520	rs9677607	A	T	69.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.67;SOR=2.303;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	103281540	rs35151143	G	GT	4829.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=95;ExcessHet=0.4576;FS=1.395;MQ=59.95;MQRankSum=0.00;QD=24.90;ReadPosRankSum=-5.200e-02;SOR=1.170;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,89:95:99:2377,245,0
chr2	103281960	rs6543176	A	G	2181.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.69;SOR=6.556;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:465,33,0
chr2	103311338	rs10589861	AGTTT	A	578.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=1.24;SOR=0.922;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,218
chr2	103317840	rs2310319	T	C	486.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=3.126;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr2	103322594	.	A	C	67.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=50.99;NEGATIVE_TRAIN_SITE;QD=33.59;SOR=2.303;VQSLOD=0.800;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	103334969	rs1052431	G	A	4457.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DB;DP=116;ExcessHet=6.9897;FS=2.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.707;SOR=0.585;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,49:116:99:1152,0,1692
chr2	103335441	rs33993717	A	G	6722.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=309;ExcessHet=3.9794;FS=0.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.345;SOR=0.667;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:160,149:309:99:3563,0,3701
chr2	103343234	rs3796061	G	C	703.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=8;ExcessHet=3.9794;FS=2.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=0.298;SOR=0.148;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:51:187,0,51
chr2	103343275	rs34958116	G	GA	157.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=17;ExcessHet=3.9794;FS=1.307;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.63;ReadPosRankSum=0.369;SOR=0.923;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,5:17:49:49,0,173
chr2	103375056	rs2732838	T	G	2309.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=59;ExcessHet=6.9897;FS=5.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-4.870e-01;SOR=0.692;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,33:59:99:854,0,636
chr2	103378560	rs2732839	T	C	180.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.72;MQRankSum=1.07;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=0.712;SOR=1.609;VQSLOD=0.505;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:62:189,0,62
chr2	103378581	rs5833037	CT	C	483.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.020e-01;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=59.87;MQRankSum=0.792;QD=8.80;ReadPosRankSum=0.205;SOR=0.762;VQSLOD=0.546;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:77:127,0,77
chr2	103378857	rs2540298	C	G	4158.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e-01;DB;DP=96;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.485;SOR=0.719;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,46:96:99:1304,0,1443
chr2	103380998	rs2540296	C	G	1315.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-2.570e-01;SOR=0.596;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:193,0,392
chr2	103431404	rs887987	T	C	6593.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=30.25;SOR=1.153;VQSLOD=3.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1840,188,0
chr2	105471802	.	GGC	G	68.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.66;ReadPosRankSum=-1.036e+00;SOR=0.368;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,127
chr2	105472055	rs186512421	T	C	251.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=5;ExcessHet=1.5490;FS=2.881;MQ=60.00;MQRankSum=0.00;QD=20.92;ReadPosRankSum=1.98;SOR=0.197;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:150,15,0
chr2	105489000	rs13392356	G	C	279.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.05;ReadPosRankSum=-1.150e+00;SOR=0.859;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:99:0|1:105489000_G_C:288,0,133:105489000
chr2	105489001	rs13418568	C	A	279.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.03;ReadPosRankSum=-1.383e+00;SOR=0.859;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:99:0|1:105489000_G_C:288,0,133:105489000
chr2	105654446	rs7587563	A	G	1118.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.30;SOR=5.211;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
chr2	105654716	rs3739160	C	T	14459.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=1.017;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,229:229:99:6984,685,0
chr2	105654830	rs3739159	G	T	4306.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.97;SOR=6.593;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1623,126,0
chr2	105665995	rs3739157	G	A	228.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=3.912;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	105666037	rs3739156	A	G	77.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.99;SOR=2.833;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr2	105696591	rs68154520	C	T	854.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.03;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=1.02;SOR=0.829;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:469,0,370
chr2	105709023	rs6543282	T	C	7348.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=1.783;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2039,189,0
chr2	105885961	rs2241797	T	C	4470.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=81;ExcessHet=3.9794;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=1.33;SOR=0.805;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1157,0,1041
chr2	105889683	rs2250658	C	T	429.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=2.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.88;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:105889683_C_T:75,0,232:105889683
chr2	105889684	rs2250659	A	G	429.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.9794;FS=1.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=0.00;SOR=1.270;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:105889683_C_T:75,0,232:105889683
chr2	105897261	rs2679833	C	T	1568.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=2.461;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:750,66,0
chr2	105923991	rs6709616	G	A	336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=22;ExcessHet=3.0103;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=-5.920e-01;SOR=1.942;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:345,0,294
chr2	105924510	rs2241801	A	G	10069.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.210e-01;DB;DP=164;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.880;SOR=0.707;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,71:164:99:1771,0,2536
chr2	105924947	rs1985599	C	T	41.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.59;ReadPosRankSum=-5.490e-01;SOR=0.551;VQSLOD=22.63;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:9:50:50,0,248
chr2	105953938	rs3217439	G	GC	2367.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=30;ExcessHet=3.9794;FS=6.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=0.749;SOR=1.385;VQSLOD=6.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:507,0,551
chr2	105959592	rs28930676	G	A	1564.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.083e+00;DB;DP=112;ExcessHet=3.0103;FS=2.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.625;SOR=0.465;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,61:112:99:1573,0,1284
chr2	105959752	rs111280200	A	G	318.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.617e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=0.114;SOR=1.112;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:327,0,204
chr2	105961703	rs2679842	G	A	1336.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.134;SOR=0.892;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:253,0,260
chr2	105977761	rs11124029	G	A	761.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DB;DP=70;ExcessHet=3.0103;FS=2.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-4.200e-01;SOR=0.449;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,31:70:99:770,0,1020
chr2	105979506	rs2278501	T	C	557.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.500e-02;DB;DP=8;ExcessHet=3.9794;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=0.566;SOR=2.613;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:59:59,0,194
chr2	105979730	rs2278502	C	A	7791.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DB;DP=200;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.173;SOR=0.641;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,96:200:99:2433,0,2592
chr2	106013147	rs34179780	C	T	2025.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-01;DB;DP=47;ExcessHet=6.9897;FS=1.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=-1.820e-01;SOR=0.807;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:542,0,558
chr2	106013216	rs11891016	T	C	814.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-2.500e-02;SOR=0.619;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:189,0,322
chr2	106015194	rs60968240	G	C	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532e+00;DB;DP=26;ExcessHet=3.0103;FS=5.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.74;ReadPosRankSum=1.54;SOR=0.102;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,9:26:99:184,0,563
chr2	106471327	rs7580718	C	A	2086.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=25;ExcessHet=3.9794;FS=1.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.171;SOR=0.492;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:74:886,74,0
chr2	106471393	rs6543345	T	C	5892.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=1.491;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1777,150,0
chr2	106471825	rs3832068	C	CA	1195.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.100e-01;DB;DP=25;ExcessHet=3.0103;FS=4.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=0.00;SOR=0.124;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,24:25:48:575,48,0
chr2	106509301	.	CA	C	155.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e-01;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.86;ReadPosRankSum=-7.000e-01;SOR=0.399;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,2:12:19:19,0,192
chr2	106687456	rs13014521	G	C	857.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=82;ExcessHet=3.0103;FS=2.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-1.571e+00;SOR=0.412;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,37:82:99:866,0,1167
chr2	106690137	rs4851111	G	A	270.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.004e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=0.850;SOR=0.289;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:79:79,0,528
chr2	106690542	rs35317173	G	A	1108.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=1.44;SOR=0.983;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:142,0,221
chr2	106710668	rs11268588	C	CGCAGGAAGGAAGTGCCACCTT	2543.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-1.259e+00;SOR=1.218;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,11:17:99:440,0,1009
chr2	106713834	rs10206639	C	T	774.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.99;ReadPosRankSum=-5.450e-01;SOR=3.014;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:126,0,154
chr2	106714953	rs1869064	A	C	540.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=3.912;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:173,15,0
chr2	106715342	rs3820891	G	A	2730.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=3.855;VQSLOD=19.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:899,75,0
chr2	106717274	rs3739136	A	G	2036.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913e+00;DB;DP=19;ExcessHet=3.0103;FS=1.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.69;ReadPosRankSum=0.169;SOR=1.236;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:327,0,194
chr2	106717656	rs10177888	G	A	3336.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.035e+00;DB;DP=25;ExcessHet=3.0103;FS=2.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=-6.510e-01;SOR=1.781;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:534,0,267
chr2	106717743	rs10202208	C	T	1078.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.26;ReadPosRankSum=0.00;SOR=4.548;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:71:142,0,71
chr2	106739752	rs11325302	AG	A	917.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=6.736;VQSLOD=6.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:203,18,0
chr2	106742139	rs4851925	C	T	6316.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=0.721;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1910,189,0
chr2	106742177	rs3739137	T	A	5868.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=1.130;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1812,168,0
chr2	106774298	rs6732473	A	G	81.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.32;SOR=1.179;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr2	106780015	rs3910716	C	T	3968.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.86;POSITIVE_TRAIN_SITE;QD=33.07;SOR=1.903;VQSLOD=5.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1444,125,0
chr2	106780055	rs10631203	C	CTG	6858.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=26.94;SOR=1.432;VQSLOD=5.78;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2514,169,0
chr2	106782272	rs67682917	A	AG	880.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.82;SOR=2.419;VQSLOD=5.53;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:106782272_A_AG:450,30,0:106782272
chr2	106782274	rs11124086	C	G	1186.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.49;SOR=2.468;VQSLOD=19.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:106782272_A_AG:450,30,0:106782272
chr2	106782398	rs4851115	C	G	3752.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=2.063;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:965,84,0
chr2	106810727	rs7604916	A	G	21458.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.70;SOR=1.344;VQSLOD=4.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,208:208:99:6502,623,0
chr2	106994382	rs62145217	A	G	288.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=52.28;POSITIVE_TRAIN_SITE;QD=26.24;SOR=0.859;VQSLOD=0.400;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:122,15,0
chr2	106994455	rs62145218	C	T	249.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=48.78;QD=33.66;SOR=1.609;VQSLOD=-1.146e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:106994455_C_T:180,12,0:106994455
chr2	106994468	rs4280451	A	G	243.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=46.65;QD=30.31;SOR=2.303;VQSLOD=-2.604e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:106994455_C_T:180,12,0:106994455
chr2	107002543	rs62145224	T	A	307.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=45.52;MQRankSum=-4.410e-01;QD=15.39;ReadPosRankSum=1.38;SOR=0.527;VQSLOD=-3.729e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,73
chr2	107002646	rs4384784	G	C	2740.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;DB;DP=25;ExcessHet=3.9794;FS=1.615;MQ=55.38;MQRankSum=-1.973e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=-4.460e-01;SOR=1.349;VQSLOD=-2.643e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,19:25:99:676,0,187
chr2	107007576	rs60043380	A	T	2193.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=27;ExcessHet=3.9794;FS=2.200;MQ=55.65;MQRankSum=-4.630e-01;NEGATIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=-2.500e-02;SOR=1.093;VQSLOD=-2.191e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:497,0,337
chr2	107008153	rs4381777	C	A	552.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DB;DP=13;ExcessHet=3.9794;FS=5.105;MQ=42.86;MQRankSum=-1.267e+00;QD=10.63;ReadPosRankSum=0.128;SOR=1.609;VQSLOD=-3.895e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:50:50,0,289
chr2	107032279	rs6543411	T	C	8116.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DB;DP=140;ExcessHet=3.0103;FS=4.276;MQ=54.81;MQRankSum=-4.485e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=-7.510e-01;SOR=0.964;VQSLOD=-5.334e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,59:140:99:1241,0,1854
chr2	107032455	rs185034930	G	A	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=33;ExcessHet=3.0103;FS=4.437;MQ=58.31;MQRankSum=1.95;NEGATIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-8.120e-01;SOR=0.173;VQSLOD=-1.767e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,13:33:99:324,0,613
chr2	107040372	rs200719868	C	G	4310.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DB;DP=353;ExcessHet=3.0103;FS=6.240;MQ=44.17;MQRankSum=-1.327e+00;QD=12.21;ReadPosRankSum=0.723;SOR=1.002;VQSLOD=-3.168e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:191,162:353:99:4319,0,5063
chr2	107041198	.	A	C	2017.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.90;DP=305;ExcessHet=3.0103;FS=10.989;MQ=48.80;MQRankSum=-7.019e+00;QD=6.61;ReadPosRankSum=1.30;SOR=1.169;VQSLOD=-5.096e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:214,91:305:99:2026,0,5712
chr2	107073469	rs76857936	T	A	5062.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.426e+00;DB;DP=77;ExcessHet=3.9794;FS=13.704;MQ=51.84;MQRankSum=2.80;NEGATIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=-6.730e-01;SOR=0.265;VQSLOD=-3.053e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,28:77:99:587,0,1326
chr2	107073501	rs72627454	C	T	4673.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.454e+00;DB;DP=90;ExcessHet=3.9794;FS=14.010;MQ=51.37;MQRankSum=2.92;NEGATIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=-2.870e-01;SOR=0.621;VQSLOD=-3.104e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,27:90:99:433,0,1618
chr2	107073736	rs56077036	C	A	678.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=47.97;QD=32.86;SOR=2.948;VQSLOD=-1.561e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr2	107073804	rs60279773	C	T	627.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=42.16;MQRankSum=0.712;QD=15.32;ReadPosRankSum=0.366;SOR=0.741;VQSLOD=-4.915e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:50:50,0,148
chr2	107094263	rs146265722	T	C	78.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=58.63;MQRankSum=0.489;QD=9.79;ReadPosRankSum=-8.540e-01;SOR=0.368;VQSLOD=-8.641e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:87:87,0,180
chr2	107099946	rs11124114	C	A	69.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=2.303;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	107107190	rs62153983	T	C	55.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;DB;DP=18;ExcessHet=3.0103;FS=5.563;MQ=54.64;MQRankSum=-3.254e+00;NEGATIVE_TRAIN_SITE;QD=3.47;ReadPosRankSum=-1.135e+00;SOR=0.031;VQSLOD=-2.152e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,3:18:63:63,0,470
chr2	107107511	rs11124115	C	T	5386.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=0.4576;FS=0.000;MQ=58.02;POSITIVE_TRAIN_SITE;QD=32.06;SOR=0.818;VQSLOD=4.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,168:168:99:5403,504,0
chr2	107107567	rs2228021	G	C	14122.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.945e+00;DB;DP=159;ExcessHet=3.0103;FS=0.664;MQ=54.30;MQRankSum=-1.282e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=-1.627e+00;SOR=0.613;VQSLOD=-1.148e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4747,476,0
chr2	107107694	rs6543414	A	G	5903.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=45.77;POSITIVE_TRAIN_SITE;QD=26.96;SOR=4.365;VQSLOD=-1.854e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1621,132,0
chr2	107107765	rs6543415	C	A	2478.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=56.31;POSITIVE_TRAIN_SITE;QD=22.80;SOR=6.869;VQSLOD=5.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:858,66,0
chr2	107112874	rs6734823	T	C	1106.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=57.65;POSITIVE_TRAIN_SITE;QD=27.87;SOR=6.518;VQSLOD=5.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:224,15,0
chr2	107118896	rs4340514	T	C	2643.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=52.22;QD=34.33;SOR=2.660;VQSLOD=0.996;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:835,69,0
chr2	107119136	rs4365459	G	C	2447.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.59;POSITIVE_TRAIN_SITE;QD=31.45;SOR=4.174;VQSLOD=5.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:827,66,0
chr2	107121040	rs146000492	T	TA	3372.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=58.88;POSITIVE_TRAIN_SITE;QD=28.58;SOR=0.914;VQSLOD=5.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1104,119,0
chr2	107423395	rs1470590	T	G	2439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=107;ExcessHet=3.9794;FS=6.919;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=1.73;SOR=0.610;VQSLOD=6.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,47:107:99:1194,0,1428
chr2	107446370	rs5833213	GA	G	897.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=0.183;SOR=2.147;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:107446370_GA_G:147,0,379:107446370
chr2	107446396	rs877693	T	C	1274.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=12;ExcessHet=3.0103;FS=4.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.69;ReadPosRankSum=2.09;SOR=2.774;VQSLOD=19.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:107446370_GA_G:144,0,386:107446370
chr2	107446430	rs935565	T	C	2120.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=18;ExcessHet=3.0103;FS=8.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=0.861;SOR=2.477;VQSLOD=18.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:233,0,302
chr2	107446918	rs7607635	A	C	43.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.45;ReadPosRankSum=-3.190e-01;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:52:52,0,196
chr2	107449321	rs7565174	A	T	636.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=-1.800e-01;SOR=0.569;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:39:39,0,181
chr2	107450390	rs7608410	C	T	52.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.46;ReadPosRankSum=1.47;SOR=0.223;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:61:61,0,171
chr2	107450589	rs3796111	C	T	686.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=62;ExcessHet=3.0103;FS=2.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.760;SOR=1.077;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,27:62:99:695,0,781
chr2	107459974	rs3796110	C	T	2435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=218;ExcessHet=3.0103;FS=3.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-7.100e-01;SOR=0.982;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,97:218:99:2444,0,3168
chr2	108443325	rs1619178	T	C	2908.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=12;ExcessHet=3.0103;FS=3.017;MQ=59.37;MQRankSum=-3.190e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=35.93;ReadPosRankSum=0.172;SOR=2.030;VQSLOD=0.479;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,9:12:99:0|1:108443325_T_C:369,0,143:108443325
chr2	108443328	rs3113782	A	T	2945.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DB;DP=12;ExcessHet=3.0103;FS=3.066;MQ=59.38;MQRankSum=-3.190e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.83;ReadPosRankSum=0.786;SOR=2.062;VQSLOD=-1.360e-02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,9:12:99:0|1:108443325_T_C:369,0,143:108443325
chr2	108479622	rs369599664	CT	C	157.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=33.28;MQRankSum=-6.740e-01;QD=9.82;ReadPosRankSum=0.241;SOR=1.179;VQSLOD=0.269;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:40:98,0,40
chr2	108496435	rs832352	T	A	3250.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=25;ExcessHet=3.0103;FS=7.297;MQ=54.52;MQRankSum=1.37;NEGATIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=1.15;SOR=0.164;VQSLOD=-1.891e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:322,0,475
chr2	108499307	.	A	G	375.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.782;DP=21;ExcessHet=3.0103;FS=0.000;MQ=46.84;MQRankSum=0.260;QD=17.87;ReadPosRankSum=-6.520e-01;SOR=1.292;VQSLOD=-3.341e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:384,0,232
chr2	108520599	.	A	G	380.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DP=36;ExcessHet=3.0103;FS=0.000;MQ=46.59;MQRankSum=-1.019e+00;QD=10.56;ReadPosRankSum=-3.320e-01;SOR=0.693;VQSLOD=-3.746e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:389,0,474
chr2	108604411	rs13398078	T	C	72.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:68:0|1:108604411_T_C:81,0,68:108604411
chr2	108604418	rs13384641	C	T	72.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:68:0|1:108604411_T_C:81,0,68:108604411
chr2	108618540	rs3731683	G	A	294.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.760e-01;DB;DP=38;ExcessHet=3.0103;FS=5.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.74;ReadPosRankSum=0.503;SOR=0.202;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,12:38:99:303,0,762
chr2	108622218	rs333222	C	T	319.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.96;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr2	108622812	rs35097745	TTA	T	4833.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.017;DB;DP=41;ExcessHet=3.0103;FS=4.957;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.57;ReadPosRankSum=-1.320e-01;SOR=0.320;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1781,123,0
chr2	108622833	.	AT	A	369.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DP=18;ExcessHet=6.9897;FS=0.000;MQ=59.30;MQRankSum=1.03;QD=7.25;ReadPosRankSum=1.74;SOR=0.995;VQSLOD=0.115;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:18:85:130,0,85
chr2	108863650	rs9646947	A	C	768.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-1.983e+00;SOR=0.660;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,27:42:99:777,0,424
chr2	108863767	rs9308806	A	C	5448.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DB;DP=90;ExcessHet=1.5490;FS=3.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.84;ReadPosRankSum=0.981;SOR=0.786;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,45:90:99:1032,0,984
chr2	108868736	rs13030422	G	A	163.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:172,0,182
chr2	108875464	rs149535765	AAAACTTGGTCAGGTGATGTTAT	A	1770.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.64;ReadPosRankSum=-2.880e-01;SOR=0.653;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:91,49:140:99:1779,0,3660
chr2	108876897	rs11687745	A	G	448.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.03;ReadPosRankSum=-1.645e+00;SOR=2.303;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,104
chr2	108876948	rs4141931	C	T	788.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=-8.170e-01;SOR=0.859;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:125,0,298
chr2	108877062	rs4141932	T	A	2915.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DB;DP=53;ExcessHet=1.5490;FS=1.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=1.25;SOR=1.015;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:731,0,725
chr2	108910917	rs150794821	A	ATCTCTCCTTCCTCTTTTCTCTCTCCCTCCC	1180.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.55;SOR=3.767;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:314,21,0
chr2	108915136	rs7590599	T	C	1311.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;DB;DP=26;ExcessHet=1.5490;FS=3.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=-1.113e+00;SOR=1.251;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:796,78,0
chr2	108915263	rs4149422	C	T	917.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=19;ExcessHet=1.5490;FS=9.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=-1.348e+00;SOR=2.093;VQSLOD=18.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:579,57,0
chr2	108938515	rs1879494	C	A	61.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,74
chr2	108938552	rs1879495	T	G	492.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=-1.380e-01;SOR=0.495;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:277,24,0
chr2	108938961	rs145539429	T	C	1326.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.737e+00;DB;DP=136;ExcessHet=3.0103;FS=6.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-1.780e-01;SOR=0.337;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,59:136:99:1335,0,1995
chr2	108944448	rs7580171	C	T	57.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,102
chr2	108945764	rs13383219	A	G	205.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-03;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-1.750e-01;SOR=1.609;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:108945764_A_G:214,0,315:108945764
chr2	108945782	rs13408865	C	T	202.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=-4.130e-01;SOR=1.179;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:108945764_A_G:211,0,337:108945764
chr2	108946033	rs17036144	C	T	691.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DB;DP=61;ExcessHet=3.0103;FS=7.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-1.437e+00;SOR=1.708;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:700,0,927
chr2	108946069	rs17036146	G	A	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e-01;DB;DP=55;ExcessHet=3.0103;FS=1.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=-1.478e+00;SOR=1.022;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,22:55:99:507,0,896
chr2	108946131	rs72941177	A	T	302.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;DB;DP=27;ExcessHet=3.0103;FS=1.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.642;SOR=1.329;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:311,0,482
chr2	108946156	rs6753034	T	C	1013.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=18;ExcessHet=1.5490;FS=1.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=0.962;SOR=1.308;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:700,54,0
chr2	108946178	rs6709159	A	G	736.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=0.753;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:463,36,0
chr2	108968848	rs12329268	A	C	1335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=120;ExcessHet=3.0103;FS=0.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-1.027e+00;SOR=0.821;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,53:120:99:1344,0,1547
chr2	108994808	rs1402467	C	G	1102.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DB;DP=92;ExcessHet=3.0103;FS=0.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.579;SOR=0.842;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,44:92:99:1111,0,1168
chr2	108998798	rs34003233	T	G	1052.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.14;ReadPosRankSum=1.93;SOR=0.879;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,39:58:99:1061,0,397
chr2	108999483	.	CAAA	C	429.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.840e-01;DP=22;ExcessHet=6.9897;FS=2.609;MQ=59.97;MQRankSum=0.00;QD=10.48;ReadPosRankSum=0.213;SOR=0.352;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:22:99:290,0,289
chr2	108999786	rs4149436	T	C	1766.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.238;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1783,171,0
chr2	109000112	rs5008103	A	G	292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=20;ExcessHet=3.0103;FS=2.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-6.110e-01;SOR=0.223;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:301,0,268
chr2	109004026	.	TA	T	52.14	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=26.07;SOR=0.693;VQSLOD=3.86;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
chr2	109065858	rs2460947	T	C	1502.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=64;ExcessHet=3.9794;FS=2.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.417;SOR=0.974;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:839,0,842
chr2	109066234	rs377365761	AT	A	84.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.397;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.02;ReadPosRankSum=1.33;SOR=0.105;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,3:14:93:0|1:109066234_AT_A:93,0,371:109066234
chr2	109066254	rs111776505	C	T	87.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=-9.800e-01;SOR=0.148;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,3:12:96:0|1:109066234_AT_A:96,0,365:109066234
chr2	109066288	rs2460945	A	G	1004.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=6.518;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:317,24,0
chr2	109067261	rs2683799	T	C	180.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=-5.980e-01;SOR=0.446;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	109069008	rs2683797	T	C	1001.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=33;ExcessHet=3.9794;FS=4.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.812;SOR=0.322;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:33:99:464,0,313
chr2	109088593	rs111860015	A	G	254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929e+00;DB;DP=22;ExcessHet=3.0103;FS=4.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-3.640e-01;SOR=0.180;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:263,0,312
chr2	109088996	rs2577622	A	G	173.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.76;SOR=1.981;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0
chr2	109089404	rs2243888	C	G	1246.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.940e-01;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.923;SOR=0.666;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,25:37:99:699,0,338
chr2	109099326	rs113976191	C	T	55.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=1.28;SOR=0.307;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,139
chr2	109099477	rs2577613	A	G	920.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.795;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=-4.070e-01;SOR=0.689;VQSLOD=2.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,18:46:99:526,0,679
chr2	109099531	rs112971525	C	G	598.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650e-01;DB;DP=51;ExcessHet=3.0103;FS=1.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.302;SOR=0.633;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:607,0,552
chr2	109099572	rs2718698	C	G	3841.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.49;SOR=1.028;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1254,120,0
chr2	109104356	.	ATT	A	427.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.69;MQRankSum=-5.670e-01;QD=6.58;ReadPosRankSum=1.32;SOR=0.610;VQSLOD=0.281;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:23:99:189,0,172
chr2	109104464	rs10184417	G	C	107.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.70;SOR=1.179;VQSLOD=17.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	109278635	.	T	G	1231.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.06;DP=47;ExcessHet=3.9794;FS=2.593;MQ=53.80;MQRankSum=-3.834e+00;NEGATIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=2.31;SOR=1.242;VQSLOD=-3.588e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:856,0,738
chr2	109292280	rs7584953	T	C	16252.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=59.42;POSITIVE_TRAIN_SITE;QD=31.74;SOR=1.401;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:4922,486,0
chr2	109293130	rs115305258	A	G	62.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=44.97;MQRankSum=-1.961e+00;QD=2.84;ReadPosRankSum=1.75;SOR=0.512;VQSLOD=-4.373e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,4:22:70:70,0,493
chr2	109294588	rs145969561	A	T	3824.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=112;ExcessHet=3.9794;FS=0.000;MQ=59.78;MQRankSum=0.684;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.841;SOR=0.670;VQSLOD=1.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,64:112:99:1731,0,1121
chr2	109297180	rs150889011	G	A	103.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=33;ExcessHet=3.0103;FS=6.808;MQ=45.63;MQRankSum=-8.550e-01;QD=3.13;ReadPosRankSum=0.350;SOR=2.179;VQSLOD=-4.332e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,6:33:99:112,0,666
chr2	109345484	rs826532	G	A	1260.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409e+00;DB;DP=30;ExcessHet=6.9897;FS=1.800;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-7.900e-02;SOR=0.495;VQSLOD=6.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:460,0,299
chr2	109345867	rs826531	C	G	69.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=50.99;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.96;SOR=2.303;VQSLOD=0.683;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	109347947	rs826526	T	G	2058.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=41;ExcessHet=6.9897;FS=6.819;MQ=59.72;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-4.310e-01;SOR=1.310;VQSLOD=4.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:536,0,534
chr2	109351914	rs826579	C	G	2471.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=45;ExcessHet=6.9897;FS=1.861;MQ=47.04;MQRankSum=-2.294e+00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.960;SOR=0.929;VQSLOD=-1.791e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:710,0,529
chr2	109352503	rs826578	A	G	876.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=22;ExcessHet=6.9897;FS=1.898;MQ=56.59;MQRankSum=-2.331e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.601;SOR=0.270;VQSLOD=-8.759e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:439,0,304
chr2	109352542	rs826577	G	A	1036.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.539e+00;DB;DP=29;ExcessHet=6.9897;FS=11.251;MQ=52.25;MQRankSum=-3.495e+00;NEGATIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-7.900e-01;SOR=2.038;VQSLOD=-3.512e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:321,0,501
chr2	109368210	.	G	A	339.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DP=50;ExcessHet=3.0103;FS=1.208;MQ=45.67;MQRankSum=0.011;QD=6.79;ReadPosRankSum=-1.665e+00;SOR=0.976;VQSLOD=-4.581e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,14:50:99:348,0,1023
chr2	109369720	rs826521	G	T	2064.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DB;DP=31;ExcessHet=6.9897;FS=1.479;MQ=57.62;MQRankSum=-1.264e+00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=-1.124e+00;SOR=0.884;VQSLOD=-4.009e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:617,0,408
chr2	109371230	rs144795306	G	GTAT	664.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=52.76;MQRankSum=-1.803e+00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=-4.640e-01;SOR=1.101;VQSLOD=1.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:22:207,0,22
chr2	109374952	rs826549	A	G	2308.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744e+00;DB;DP=72;ExcessHet=6.9897;FS=4.036;MQ=52.83;MQRankSum=-4.911e+00;NEGATIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=1.23;SOR=0.474;VQSLOD=-3.223e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,31:72:99:572,0,998
chr2	109378348	rs368326522	T	C	72.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.431;QD=8.03;ReadPosRankSum=-8.760e-01;SOR=0.283;VQSLOD=-3.010e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:81:81,0,212
chr2	109381312	rs375070272	G	C	1177.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.410e-01;DB;DP=87;ExcessHet=3.0103;FS=4.080;MQ=60.00;MQRankSum=0.00;QD=13.53;ReadPosRankSum=-8.790e-01;SOR=0.368;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1186,0,1249
chr2	109381438	rs61748149	A	G	1121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DB;DP=97;ExcessHet=3.0103;FS=1.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=1.44;SOR=0.853;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,44:97:99:1130,0,1441
chr2	109388846	rs700876	G	A	812.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771e+00;DB;DP=29;ExcessHet=6.9897;FS=2.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=1.31;SOR=1.179;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:235,0,539
chr2	109389124	rs700875	A	T	926.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=22;ExcessHet=6.9897;FS=3.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.816;SOR=1.289;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:314,0,322
chr2	109389463	rs826580	G	A	11150.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=1.149;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3297,313,0
chr2	109393522	rs58272304	TG	T	3151.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=3.684;VQSLOD=5.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,27:27:81:926,81,0
chr2	109393766	rs56132830	A	T	2833.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.08;DB;DP=33;ExcessHet=6.9897;FS=4.963;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=-1.940e-01;SOR=1.336;VQSLOD=6.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,18:33:99:0|1:109393766_A_T:706,0,614:109393766
chr2	109393767	rs367802106	TATAAC	T	2833.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=33;ExcessHet=6.9897;FS=4.963;MQ=59.99;MQRankSum=0.00;QD=19.82;ReadPosRankSum=-4.220e-01;SOR=1.336;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,18:33:99:0|1:109393766_A_T:706,0,614:109393766
chr2	109393774	rs371189636	A	T	2780.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.982e+00;DB;DP=28;ExcessHet=6.9897;FS=1.054;MQ=59.99;MQRankSum=0.00;QD=21.07;SOR=0.998;VQSLOD=4.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,17:28:99:0|1:109393766_A_T:678,0,491:109393766
chr2	109393779	rs375449172	A	T	2628.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=21.73;ReadPosRankSum=-6.090e-01;SOR=0.718;VQSLOD=5.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,17:26:99:0|1:109393766_A_T:681,0,449:109393766
chr2	109393780	rs367803624	G	T	2637.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=22.17;ReadPosRankSum=-5.460e-01;SOR=0.534;VQSLOD=5.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,17:26:99:0|1:109393766_A_T:687,0,366:109393766
chr2	109393781	rs371705935	A	T	2637.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.791e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=22.36;ReadPosRankSum=-5.260e-01;SOR=0.551;VQSLOD=5.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,17:26:99:0|1:109393766_A_T:687,0,366:109393766
chr2	109393786	rs371246549	TC	T	2275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=21.88;ReadPosRankSum=-6.280e-01;SOR=0.653;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,15:23:99:0|1:109393766_A_T:648,0,327:109393766
chr2	109393789	.	TCCCTTACCCCCC	T	2239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012e+00;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=21.75;ReadPosRankSum=-1.049e+00;SOR=0.675;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,15:24:99:0|1:109393766_A_T:603,0,411:109393766
chr2	109393803	.	GT	G	2269.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061e+00;DP=21;ExcessHet=6.9897;FS=1.902;MQ=59.98;MQRankSum=0.00;QD=24.41;ReadPosRankSum=-1.475e+00;SOR=0.307;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,15:21:99:0|1:109393766_A_T:609,0,327:109393766
chr2	109393807	rs199740075	G	GTTTAGT	2239.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e-01;DB;DP=20;ExcessHet=6.9897;FS=1.901;MQ=59.98;MQRankSum=0.00;QD=25.75;SOR=0.324;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,14:20:99:0|1:109393766_A_T:612,0,285:109393766
chr2	109393854	rs17020526	G	A	207.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.78;MQRankSum=-8.120e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=-1.242e+00;SOR=1.402;VQSLOD=0.731;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:92:216,0,92
chr2	109403101	rs826554	G	C	432.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-4.990e-01;SOR=0.420;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:75:110,0,75
chr2	109404474	rs35693674	C	CT	1016.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870e-01;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.96;ReadPosRankSum=-1.980e-01;SOR=0.607;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,17:30:99:362,0,273
chr2	109408033	rs375868318	T	A	520.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119e+00;DB;DP=60;ExcessHet=3.0103;FS=2.510;MQ=60.00;MQRankSum=0.00;QD=8.67;ReadPosRankSum=-3.270e-01;SOR=1.092;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,23:60:99:529,0,1019
chr2	109408159	rs35794776	G	T	1420.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.764;SOR=0.721;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1429,0,1238
chr2	109408208	rs6740879	G	A	3537.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410e-01;DB;DP=83;ExcessHet=6.9897;FS=4.212;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-8.750e-01;SOR=0.492;VQSLOD=6.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1165,0,1035
chr2	109411248	rs111234702	GAATAT	G	1040.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DB;DP=14;ExcessHet=6.9897;FS=3.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=-1.320e-01;SOR=2.093;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:318,0,333
chr2	109421334	rs147074070	TCTC	T	1309.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.470e-01;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=0.653;SOR=0.589;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,33:55:99:1318,0,980
chr2	109429146	rs975597	T	A	2476.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464e+00;DB;DP=42;ExcessHet=6.9897;FS=0.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.270;SOR=0.800;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:567,0,681
chr2	109489753	rs111818834	AATG	A	2312.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.62;ReadPosRankSum=0.408;SOR=3.611;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:312,0,371
chr2	109490104	rs6737810	A	G	2519.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=5.994;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:750,57,0
chr2	109490146	rs11686550	A	G	1090.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=1.69;SOR=1.402;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:128,0,247
chr2	109513321	rs7607563	C	A	9311.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=1.283;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2976,270,0
chr2	109513654	rs12623957	G	A	8946.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DB;DP=114;ExcessHet=3.0103;FS=0.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.707;SOR=0.634;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,40:114:99:910,0,1872
chr2	109513786	rs3789738	A	T	1636.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=15;ExcessHet=3.9794;FS=4.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=1.22;SOR=1.823;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:176,0,248
chr2	109522720	rs260639	G	A	3268.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=41;ExcessHet=3.0103;FS=3.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=0.258;SOR=1.110;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,10:41:99:188,0,762
chr2	109522747	rs3833574	CT	C	757.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.93;ReadPosRankSum=1.50;SOR=0.559;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,29:40:99:766,0,215
chr2	109523038	rs260638	G	T	588.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.00;SOR=3.912;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:259,18,0
chr2	109524105	rs11306434	CA	C	1339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.66;POSITIVE_TRAIN_SITE;QD=27.34;SOR=2.448;VQSLOD=5.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:353,39,0
chr2	109526969	rs260632	G	A	17780.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=198;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=0.997;SOR=0.307;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,197:198:99:5951,581,0
chr2	109527087	rs260631	G	A	9235.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=119;ExcessHet=3.0103;FS=1.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=0.326;SOR=0.859;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,53:119:99:1509,0,1773
chr2	109527373	rs260630	A	G	13141.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=1.276;VQSLOD=18.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4668,411,0
chr2	109539653	rs260643	A	G	3925.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.55;SOR=1.911;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:109539653_A_G:1361,111,0:109539653
chr2	109539654	rs2077536	T	C	427.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-1.830e-01;SOR=0.704;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,17:37:99:0|1:109539653_A_G:436,0,502:109539653
chr2	109539774	rs3749107	G	A	983.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.213e+00;DB;DP=76;ExcessHet=3.0103;FS=0.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-5.700e-02;SOR=0.906;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,39:76:99:992,0,1069
chr2	109539913	rs748225	C	T	632.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=70;ExcessHet=3.0103;FS=6.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=0.984;SOR=1.543;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,27:70:99:641,0,1085
chr2	109540036	rs748224	C	G	389.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DB;DP=27;ExcessHet=3.0103;FS=3.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.631;SOR=0.510;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:398,0,399
chr2	109745176	rs11681142	G	A	2588.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=5.518;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:852,66,0
chr2	109745782	rs11272340	TGGCCGGTCCCCGCCACGCA	T	8068.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.50;ReadPosRankSum=0.179;SOR=1.381;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1943,146,0
chr2	109746039	rs34609468	G	A	781.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084e+00;DB;DP=53;ExcessHet=3.0103;FS=2.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=1.19;SOR=1.071;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:790,0,742
chr2	109746685	rs6728416	C	T	104.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=1.15;SOR=2.788;VQSLOD=18.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:113,0,29
chr2	109758196	rs13023759	C	T	467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=38;ExcessHet=3.0103;FS=1.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.858;SOR=0.399;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:476,0,654
chr2	109929806	rs7570560	C	T	526.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=1.38;SOR=3.258;VQSLOD=18.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:68,0,67
chr2	109929855	rs7584669	T	C	1517.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.380e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.55;ReadPosRankSum=-2.040e-01;SOR=3.855;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,6:10:99:0|1:109929855_T_C:277,0,255:109929855
chr2	109929861	rs10200501	A	C	1559.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.00;SOR=3.664;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,7:12:99:0|1:109929855_T_C:277,0,255:109929855
chr2	109929958	rs6748434	A	G	5764.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.73;SOR=2.055;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1436,123,0
chr2	109930323	rs4494781	G	A	3621.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=28;ExcessHet=3.0103;FS=4.527;MQ=59.96;MQRankSum=-9.290e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.23;ReadPosRankSum=0.828;SOR=0.201;VQSLOD=1.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:513,0,499
chr2	109930355	rs11392657	T	TG	2243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=-7.830e-01;POSITIVE_TRAIN_SITE;QD=32.06;ReadPosRankSum=0.668;SOR=1.329;VQSLOD=1.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:317,0,236
chr2	109964431	rs6725756	C	T	1925.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.16;DB;DP=76;ExcessHet=3.9794;FS=4.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.246;SOR=1.133;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,33:76:99:951,0,1058
chr2	109988215	rs11680644	C	G	833.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=1.37;SOR=0.412;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:313,0,470
chr2	110015545	rs10169560	G	A	135.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:68:144,0,68
chr2	110035872	rs114924531	G	A	1221.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.400e-01;DB;DP=94;ExcessHet=3.0103;FS=0.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-3.410e-01;SOR=0.888;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,45:94:99:1230,0,1356
chr2	110036009	rs189648861	G	A	2772.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=209;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.26;ReadPosRankSum=-2.090e+00;SOR=0.706;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,107:209:99:2781,0,2401
chr2	110049235	rs7558217	G	A	1235.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782e+00;DB;DP=15;ExcessHet=6.9897;FS=5.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=-1.497e+00;SOR=0.128;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:195,0,295
chr2	110053209	rs7370446	T	G	3490.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=90;ExcessHet=6.9897;FS=0.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-4.040e-01;SOR=0.634;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1222,0,1166
chr2	110053248	rs7369523	C	T	1152.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e+00;DB;DP=100;ExcessHet=3.0103;FS=0.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.336;SOR=0.564;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,45:100:99:1161,0,1576
chr2	110303210	.	TTA	T	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;QD=20.75;ReadPosRankSum=-3.400e-01;SOR=2.179;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:237,0,204
chr2	110323694	rs28544318	A	T	124.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=1.609;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:136,12,0
chr2	110343555	rs73953167	G	A	144.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=18;ExcessHet=3.0103;FS=6.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.01;ReadPosRankSum=0.493;SOR=2.833;VQSLOD=17.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,5:18:99:153,0,319
chr2	110350986	rs367943911	C	CTTTTTTTT,CTTTTTTTTT	641.18	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.249e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=59.70;MQRankSum=0.00;QD=24.66;ReadPosRankSum=-2.359e+00;SOR=0.560;VQSLOD=4.94;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:0,3,3:6:32:398,61,32,63,0,34
chr2	110351051	rs6594041	C	T	178.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=1.04;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	110351726	rs73953168	G	A	365.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=20;ExcessHet=3.0103;FS=5.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=-3.430e-01;SOR=2.387;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:374,0,250
chr2	110351848	rs56164461	TA	T	137.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.97;ReadPosRankSum=0.967;SOR=1.085;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr2	110371493	rs3829700	A	T	139.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.33;ReadPosRankSum=0.967;SOR=0.368;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	110372192	rs6594048	A	G	10291.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.99;SOR=1.364;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3170,300,0
chr2	110373197	rs1560884	G	A	17262.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=271;ExcessHet=3.9794;FS=1.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=-5.530e-01;SOR=0.562;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,271:271:99:9180,813,0
chr2	110855123	rs2004273	G	T	14737.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=30.64;SOR=1.111;VQSLOD=4.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4670,468,0
chr2	110873470	rs11375171	G	GA	539.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.490e-01;DB;DP=39;ExcessHet=3.9794;FS=1.309;MQ=60.00;MQRankSum=0.00;QD=8.57;ReadPosRankSum=-1.500e-02;SOR=0.586;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,20:39:99:432,0,154
chr2	110882699	rs2048243	A	G	1596.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.73;DB;DP=44;ExcessHet=3.9794;FS=8.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=-6.840e-01;SOR=1.794;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:699,0,629
chr2	110886686	rs3838315	A	AGACCAGAT	1170.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DB;DP=43;ExcessHet=3.9794;FS=4.413;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-3.550e-01;SOR=1.241;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,13:43:99:456,0,2987
chr2	110889108	rs11240790	C	T	383.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.414;SOR=0.976;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:183,0,218
chr2	110902262	rs3752863	G	A	305.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.967;SOR=0.941;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:74,0,31
chr2	110905664	rs1509417	G	A	870.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=25;ExcessHet=3.9794;FS=1.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=1.21;SOR=1.044;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:427,0,291
chr2	110905743	rs1509416	T	A	294.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-3.450e-01;SOR=1.781;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:172,0,142
chr2	110919041	rs3817140	A	G	802.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=12;ExcessHet=3.9794;FS=2.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=0.547;SOR=1.880;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:139,0,272
chr2	110919321	rs2271244	C	T	582.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;DB;DP=16;ExcessHet=3.9794;FS=3.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=2.87;SOR=1.341;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:251,0,215
chr2	110922064	rs71793890	C	CA	52.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=0.00;QD=2.30;ReadPosRankSum=-3.090e-01;SOR=0.818;VQSLOD=5.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,5:23:46:46,0,358
chr2	110922703	rs11675767	C	T	3310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=144;ExcessHet=3.9794;FS=0.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-1.640e-01;SOR=0.726;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,72:144:99:1654,0,1506
chr2	110925982	.	GA	G	54.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DP=26;ExcessHet=3.9794;FS=1.642;MQ=59.61;MQRankSum=0.586;POSITIVE_TRAIN_SITE;QD=1.02;ReadPosRankSum=0.340;SOR=0.340;VQSLOD=1.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,5:26:61:61,0,480
chr2	110935867	rs2271245	A	G	346.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.623;SOR=0.430;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:143,0,223
chr2	110959898	rs11240794	C	G	2617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=79;ExcessHet=3.9794;FS=0.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=1.08;SOR=0.796;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,37:79:99:972,0,1078
chr2	111397237	rs112515450	CT	C	64.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=16;ExcessHet=3.9794;FS=2.444;MQ=60.00;MQRankSum=0.00;QD=1.73;ReadPosRankSum=0.182;SOR=1.162;VQSLOD=5.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:58:58,0,269
chr2	111644475	rs10188079	C	T	2510.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DB;DP=58;ExcessHet=6.9897;FS=5.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.649;SOR=0.401;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,37:58:99:965,0,482
chr2	111644491	rs66815319	TA	T	2422.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780e-01;DB;DP=51;ExcessHet=6.9897;FS=9.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=0.497;SOR=0.265;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,32:51:99:1044,0,551
chr2	111644595	rs10188169	C	T	610.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=0.175;SOR=0.957;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:58:147,0,58
chr2	111721142	rs139200296	ATGTG	A	8109.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=81;ExcessHet=3.9794;FS=2.672;MQ=59.97;MQRankSum=0.00;QD=30.95;ReadPosRankSum=0.271;SOR=0.918;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,40:81:99:1605,0,1289
chr2	111744435	rs12993549	A	C	563.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=0.319;SOR=1.426;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:56:192,0,56
chr2	111753449	rs3761707	G	C	4718.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DB;DP=152;ExcessHet=6.9897;FS=1.168;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.577;SOR=0.812;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,61:152:99:1486,0,2376
chr2	111789092	rs3789090	G	A	1432.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.160e-01;DB;DP=39;ExcessHet=3.9794;FS=5.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=1.47;SOR=1.371;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:673,0,523
chr2	111881870	rs72304848	C	CT	103.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.74;ReadPosRankSum=-1.291e+00;SOR=0.730;VQSLOD=4.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,8:40:49:49,0,619
chr2	111886180	rs200489083	CT	C	340.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=31;ExcessHet=6.9897;FS=4.377;MQ=59.95;MQRankSum=0.00;QD=3.96;ReadPosRankSum=-1.127e+00;SOR=1.204;VQSLOD=4.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,7:31:99:110,0,307
chr2	111909610	rs79493742	A	G	789.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=67;ExcessHet=3.0103;FS=0.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-7.170e-01;SOR=0.913;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,31:67:99:798,0,859
chr2	112526866	rs137999262	G	A	1011.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.260e-01;DB;DP=100;ExcessHet=3.0103;FS=3.771;MQ=41.36;MQRankSum=-2.641e+00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=1.71;SOR=0.389;VQSLOD=-2.480e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,48:100:99:1020,0,1161
chr2	112528507	rs377722806	G	A	145.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=52.14;MQRankSum=-3.179e+00;NEGATIVE_TRAIN_SITE;QD=3.72;ReadPosRankSum=-3.760e-01;SOR=0.732;VQSLOD=-3.871e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:116,0,159
chr2	112536513	rs67956372	AT	A	243.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=33.21;POSITIVE_TRAIN_SITE;QD=27.01;SOR=3.056;VQSLOD=5.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:11:112,11,0
chr2	112540142	.	T	C	174.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DP=28;ExcessHet=3.9794;FS=0.000;MQ=50.87;MQRankSum=-3.345e+00;NEGATIVE_TRAIN_SITE;QD=3.48;ReadPosRankSum=0.924;SOR=0.636;VQSLOD=-4.042e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,6:28:99:106,0,726
chr2	112550325	rs202110867	C	G	131.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=41.97;MQRankSum=1.07;QD=18.75;ReadPosRankSum=-3.280e-01;SOR=0.941;VQSLOD=-5.202e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:84:140,0,84
chr2	112578794	rs201745139	T	C	46.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=42.99;MQRankSum=-1.383e+00;QD=11.57;ReadPosRankSum=-1.383e+00;SOR=2.303;VQSLOD=-3.804e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:55:55,0,69
chr2	112582766	rs60136848	CTT	C	896.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.80;ReadPosRankSum=1.10;SOR=0.806;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,8:31:99:260,0,1061
chr2	112583476	rs12614297	C	T	481.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e+00;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=-9.470e-01;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.541;SOR=0.476;VQSLOD=1.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,19:38:99:490,0,591
chr2	112583594	rs10190026	T	C	796.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=58.82;MQRankSum=-5.240e-01;NEGATIVE_TRAIN_SITE;QD=33.20;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=-1.280e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:64:120,0,64
chr2	112588751	rs7587482	C	T	1615.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=10;ExcessHet=3.9794;FS=3.112;MQ=57.85;MQRankSum=-1.834e+00;NEGATIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=-5.410e-01;SOR=0.297;VQSLOD=-1.588e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:49:231,0,49
chr2	112589080	rs11675449	G	A	52.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=40.00;MQRankSum=0.00;QD=6.53;ReadPosRankSum=0.619;SOR=0.169;VQSLOD=-4.956e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:61:61,0,227
chr2	112590989	rs3761697	A	T	2211.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=58.35;MQRankSum=-1.466e+00;QD=24.58;ReadPosRankSum=-2.850e-01;SOR=0.809;VQSLOD=-6.682e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,17:29:99:500,0,331
chr2	112605302	rs4848197	C	T	545.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=51.35;MQRankSum=-1.383e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-3.920e-01;SOR=0.551;VQSLOD=-1.218e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:146,0,139
chr2	112605465	rs4848800	T	C	1984.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=33.64;SOR=1.316;VQSLOD=4.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:326,30,0
chr2	112614585	rs4019131	T	A	458.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=55.09;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=0.00;SOR=0.793;VQSLOD=-2.456e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:112614585_T_A:180,12,0:112614585
chr2	112614589	rs7567364	A	C	458.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=54.89;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;QD=32.74;ReadPosRankSum=0.431;SOR=0.693;VQSLOD=-2.506e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:112614585_T_A:180,12,0:112614585
chr2	112614598	rs7570210	T	C	375.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=53.53;MQRankSum=-1.150e+00;NEGATIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=1.15;SOR=1.802;VQSLOD=-1.450e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:112614585_T_A:135,9,0:112614585
chr2	112621199	rs11689168	T	C	231.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=56.34;MQRankSum=1.68;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=1.31;SOR=0.202;VQSLOD=-1.030e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:240,0,576
chr2	112621498	rs70962959	GA	G	1013.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=59.17;MQRankSum=-7.620e-01;QD=15.84;ReadPosRankSum=0.251;SOR=0.484;VQSLOD=0.561;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,20:35:99:412,0,292
chr2	112622643	rs71414605	A	G	1511.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=23;ExcessHet=3.9794;FS=5.887;MQ=54.32;MQRankSum=-2.724e+00;NEGATIVE_TRAIN_SITE;QD=25.63;ReadPosRankSum=-7.450e-01;SOR=1.961;VQSLOD=-1.573e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,13:23:99:0|1:112622643_A_G:466,0,605:112622643
chr2	112622650	rs56711676	T	C	1283.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-02;DB;DP=21;ExcessHet=3.9794;FS=3.858;MQ=53.38;MQRankSum=-3.380e+00;NEGATIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=0.00;SOR=1.713;VQSLOD=-1.575e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,11:21:99:0|1:112622643_A_G:406,0,611:112622643
chr2	112625575	rs6742515	T	C	683.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=11;ExcessHet=3.9794;FS=1.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=0.542;SOR=0.740;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:66:1|0:112625555_C_CA:66,0,193:112625555
chr2	112630412	rs141064868	A	C	345.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=9;ExcessHet=6.9897;FS=3.132;MQ=45.47;MQRankSum=-1.057e+00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-3.030e-01;SOR=2.147;VQSLOD=-2.013e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:96:96,0,185
chr2	112636685	rs10175926	G	A	1077.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=49.26;MQRankSum=-2.823e+00;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=1.95;SOR=1.559;VQSLOD=-6.830e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:172,0,134
chr2	112636761	rs10167739	T	C	294.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=51.88;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=0.00;SOR=0.976;VQSLOD=-2.627e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:78,0,31
chr2	112638517	rs4132166	G	C	890.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=53.86;MQRankSum=-1.910e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=-9.100e-02;SOR=1.949;VQSLOD=0.565;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:248,0,210
chr2	112641149	rs17835589	G	C	1502.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DB;DP=69;ExcessHet=3.9794;FS=0.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.81;SOR=0.629;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,33:69:99:800,0,904
chr2	112641256	rs2037198	G	A	2998.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=2.400;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:90:1|1:112641256_G_A:1182,90,0:112641256
chr2	112641257	rs7575582	A	G	1870.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.99;ReadPosRankSum=0.592;SOR=0.574;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,13:29:99:0|1:112641256_G_A:483,0,599:112641256
chr2	112641266	rs71414610	G	C	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.20;ReadPosRankSum=-7.700e-02;SOR=0.387;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,13:26:99:0|1:112641256_G_A:534,0,502:112641256
chr2	112641283	rs12233011	A	G	1292.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=0.873;SOR=1.022;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,11:23:99:0|1:112641256_G_A:426,0,470:112641256
chr2	112686988	rs13027171	G	A	1306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=90;ExcessHet=3.0103;FS=0.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=-1.345e+00;SOR=0.824;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,49:90:99:1315,0,922
chr2	112687157	rs138909702	A	ATATTTATTTATT	142.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.34;SOR=1.609;VQSLOD=3.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	112702647	rs11683694	C	T	2197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DB;DP=167;ExcessHet=3.0103;FS=0.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.42;SOR=0.749;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,90:167:99:2206,0,1797
chr2	112704862	rs7601798	A	G	946.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.490e-01;DB;DP=25;ExcessHet=1.5490;FS=4.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=-1.300e-01;SOR=1.550;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:72:720,72,0
chr2	112705157	rs3761701	T	C	1844.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=3.383;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:780,69,0
chr2	112705185	rs3761700	G	T	1004.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.007e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=-1.407e+00;SOR=1.038;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:663,48,0
chr2	112725684	rs113538397	A	ATGTGTG	5884.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=2.566;VQSLOD=6.08;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2966,207,0
chr2	112732716	rs2138568	A	G	2041.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.24;SOR=6.316;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:614,42,0
chr2	112740373	rs1996323	G	A	1915.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.21;SOR=3.180;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:748,66,0
chr2	112740596	rs57740008	GA	G	3516.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=95;ExcessHet=3.9794;FS=0.513;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.315;SOR=0.736;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,36:95:99:0|1:112740596_GA_G:1367,0,3674:112740596
chr2	112740598	rs57297275	T	G	3516.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.560e-01;DB;DP=97;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=16.74;ReadPosRankSum=0.465;SOR=0.681;VQSLOD=5.11;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,37:97:99:0|1:112740596_GA_G:1367,0,3674:112740596
chr2	112751737	rs77739234	G	A	119.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-1.981e+00;SOR=0.412;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:128,0,197
chr2	112751928	rs7604639	G	A	8488.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=0.835;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3628,385,0
chr2	112752142	rs7592909	A	C	3116.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.71;SOR=2.625;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1174,105,0
chr2	112752880	rs6739294	G	A	6004.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330e-01;DB;DP=78;ExcessHet=0.4576;FS=3.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.36;ReadPosRankSum=-1.631e+00;SOR=0.497;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2667,234,0
chr2	112753020	rs77702371	A	G	3524.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=117;ExcessHet=3.9794;FS=2.106;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-4.400e-02;SOR=0.688;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,62:117:99:1775,0,1277
chr2	112753097	rs6726639	A	C	6058.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=90;ExcessHet=0.4576;FS=4.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.11;ReadPosRankSum=1.73;SOR=1.281;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2926,269,0
chr2	112753230	rs11683421	T	C	1314.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=59.66;POSITIVE_TRAIN_SITE;QD=28.86;SOR=4.921;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:834,69,0
chr2	112753781	rs34346510	TA	T	5047.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.12;SOR=0.693;VQSLOD=5.58;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2249,190,0
chr2	112753883	rs10173553	C	T	4191.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=0.742;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1838,165,0
chr2	112753950	rs13003919	G	A	632.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=53;ExcessHet=3.0103;FS=1.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-5.300e-02;SOR=0.790;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,26:53:99:641,0,824
chr2	112754720	rs4848238	A	C	121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.26;MQRankSum=0.589;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-7.000e-01;SOR=0.527;VQSLOD=1.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:130,0,172
chr2	112754828	rs3811632	G	T	5104.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077e+00;DB;DP=71;ExcessHet=1.5490;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-1.157e+00;SOR=0.930;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,37:71:99:982,0,925
chr2	112754880	rs3811633	G	A	1412.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.890e-01;DB;DP=125;ExcessHet=3.0103;FS=0.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.436e+00;SOR=0.577;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,60:125:99:1421,0,1629
chr2	112754943	rs3811634	C	T	1524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=147;ExcessHet=3.0103;FS=1.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.612;SOR=0.589;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,66:147:99:1533,0,1937
chr2	112755001	rs2230515	A	G	7725.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=1.629;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3355,318,0
chr2	112755209	rs3811636	G	A	441.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=3.767;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:249,21,0
chr2	112755246	rs3811637	G	C	334.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=3.056;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:178,15,0
chr2	112758559	rs79058693	T	A	804.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.352e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.412;SOR=0.534;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:339,0,279
chr2	112761310	rs4278932	G	A	890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=19;ExcessHet=3.9794;FS=4.293;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=0.232;SOR=2.584;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:99:491,0,127
chr2	112761653	rs4848933	C	G	2964.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.35;SOR=3.070;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1283,105,0
chr2	112765973	rs1131244	A	G	4448.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.26;SOR=1.017;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2213,225,0
chr2	112766262	rs10210692	A	G	3419.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=0.963;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1362,120,0
chr2	112766304	rs55766181	G	C	1692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=51;ExcessHet=3.9794;FS=2.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.60;SOR=0.799;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,20:51:99:481,0,732
chr2	112766319	rs55799805	T	C	1630.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=51;ExcessHet=3.9794;FS=0.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=1.62;SOR=0.608;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,20:51:99:456,0,699
chr2	112767406	rs11884641	A	G	525.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250e-01;DB;DP=16;ExcessHet=3.9794;FS=7.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=1.74;SOR=0.093;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:139,0,317
chr2	112767483	rs11884693	A	G	1387.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=47;ExcessHet=3.9794;FS=1.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.495;SOR=0.511;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:620,0,656
chr2	112767739	rs75313362	A	G	2456.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=101;ExcessHet=3.9794;FS=0.998;MQ=59.99;MQRankSum=1.07;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=1.85;SOR=0.778;VQSLOD=1.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,53:101:99:1339,0,1246
chr2	112767824	rs77781750	A	G	2081.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125e+00;DB;DP=70;ExcessHet=3.9794;FS=8.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.278;SOR=0.340;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,40:70:99:1044,0,825
chr2	112767941	rs77306155	A	G	971.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=31;ExcessHet=3.9794;FS=0.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-1.488e+00;SOR=0.878;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:449,0,426
chr2	112770770	rs4374383	A	G	3800.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=0.990;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1591,141,0
chr2	112770798	rs4500955	T	C	4365.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.70;SOR=0.899;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1711,141,0
chr2	112770799	rs57116599	G	A	1364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=47;ExcessHet=3.9794;FS=0.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.724e+00;SOR=0.775;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:552,0,616
chr2	112773153	rs4627569	T	C	432.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=5.283;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:257,21,0
chr2	112773366	rs6710591	A	G	4547.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=1.170;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1806,165,0
chr2	112773500	rs6710733	A	G	1674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DB;DP=58;ExcessHet=3.9794;FS=1.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.559;SOR=0.541;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,34:58:99:842,0,582
chr2	112773528	rs111619827	TCTTGTAC	T	4948.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.55;SOR=1.739;VQSLOD=4.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1919,133,0
chr2	112776913	rs3841094	T	TC	771.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;DB;DP=34;ExcessHet=3.9794;FS=0.951;MQ=60.00;MQRankSum=0.00;QD=10.02;ReadPosRankSum=0.428;SOR=0.825;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,16:34:99:362,0,438
chr2	112776979	rs3811640	C	A	1853.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DB;DP=79;ExcessHet=3.9794;FS=2.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=-2.000e-02;SOR=0.927;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,40:79:99:971,0,914
chr2	112778389	rs55792453	C	T	503.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=-1.480e-01;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:55:181,0,55
chr2	112778441	rs11683819	A	G	449.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.98;SOR=3.442;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:255,18,0
chr2	112779286	rs10667527	A	ATC	1175.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.20;SOR=5.353;VQSLOD=6.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr2	112782675	rs77209182	G	A	225.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.180e-01;DB;DP=14;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=0.251;SOR=2.833;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:234,0,218
chr2	112785770	rs6738237	A	G	513.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.307;SOR=0.941;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:112785770_A_G:260,0,350:112785770
chr2	112785775	rs4848958	T	C	637.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.735;SOR=0.706;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,12:20:99:1|0:112785770_A_G:359,0,300:112785770
chr2	112786523	rs147500027	A	AT	1187.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=30;ExcessHet=3.9794;FS=3.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.57;SOR=1.319;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,18:30:99:514,0,323
chr2	112813066	rs10176660	G	C	69.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.21;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:27:77,0,27
chr2	112813163	rs10176769	G	A	625.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.917e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.723;SOR=0.302;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:286,0,255
chr2	112813391	rs9308665	C	G	4878.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=88;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=1.89;SOR=0.695;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,40:88:99:956,0,1188
chr2	112832535	rs71385858	CAAT	C	1734.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.600e-02;DB;DP=70;ExcessHet=3.9794;FS=0.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.127;SOR=0.764;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,31:70:99:1184,0,1963
chr2	112832684	rs6542026	G	A	2202.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.96;SOR=3.021;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:697,60,0
chr2	112847164	rs11123128	C	T	2714.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-01;DB;DP=96;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.367;SOR=0.718;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1260,0,1228
chr2	112856165	rs4849007	C	A	2606.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130e+00;DB;DP=74;ExcessHet=6.9897;FS=2.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=-1.000e-02;SOR=0.522;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,36:74:99:745,0,949
chr2	112865517	rs7562848	G	C	6870.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=32.11;SOR=1.480;VQSLOD=5.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2042,212,0
chr2	112870702	rs3842568	ATACT	A	430.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=1.18;SOR=1.179;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,157
chr2	112870730	rs7581849	G	A	330.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=1.38;SOR=1.981;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:70,0,65
chr2	112896394	rs11273609	CGTCCCTCCCGCCTCTCTCCCCT	C	891.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.73;MQRankSum=0.812;QD=20.27;ReadPosRankSum=1.10;SOR=0.800;VQSLOD=0.625;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:281,0,620
chr2	112917102	rs1320360	G	C	2364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=50;ExcessHet=6.9897;FS=1.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=0.258;SOR=0.508;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,33:50:99:973,0,467
chr2	112943070	rs12711736	C	T	587.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=0.366;SOR=2.093;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,167
chr2	112945188	rs4848281	T	A	3240.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.234e+00;DB;DP=54;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=0.796;SOR=0.865;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,23:54:99:636,0,1061
chr2	113243799	rs6707618	T	A	717.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=20;ExcessHet=3.9794;FS=3.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-6.590e-01;SOR=1.514;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:379,0,197
chr2	113277707	.	CA	C	489.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e-01;DP=23;ExcessHet=6.9897;FS=0.000;MQ=58.97;MQRankSum=-7.890e-01;QD=7.53;ReadPosRankSum=-2.640e-01;SOR=0.986;VQSLOD=0.340;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,5:23:59:59,0,239
chr2	113286562	rs1561265	A	G	1372.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.14;SOR=7.168;VQSLOD=23.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:395,30,0
chr2	113300330	rs4849071	G	A	4192.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.907e+00;DB;DP=65;ExcessHet=3.9794;FS=2.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=-2.280e-01;SOR=0.210;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2479,194,0
chr2	113300394	rs4849072	A	C	932.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.155e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=0.510;SOR=0.518;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:682,57,0
chr2	113305150	rs11123139	G	C	3415.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.976;DB;DP=78;ExcessHet=1.5490;FS=6.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=1.18;SOR=0.285;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2525,234,0
chr2	113307115	rs11675730	C	T	399.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=3.258;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	113308516	rs2304555	T	A	6437.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=0.986;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3606,345,0
chr2	113308622	rs3816140	C	T	2087.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.91;SOR=4.215;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1299,99,0
chr2	113309473	rs1545133	C	T	4769.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.355e+00;DB;DP=108;ExcessHet=1.5490;FS=0.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=1.33;SOR=0.644;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3166,323,0
chr2	113310197	rs11351307	CT	C	1942.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.316;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.591;SOR=0.688;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,40:46:57:1062,57,0
chr2	113315300	rs41278940	C	T	35.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=17.67;SOR=2.303;VQSLOD=15.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
chr2	113315735	rs57858974	CT	C	635.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=1.71;SOR=1.022;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,13:15:20:377,0,20
chr2	113315788	rs116523033	G	A	89.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-2.189e+00;SOR=0.495;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,148
chr2	113317353	rs3789723	G	A	283.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.74;ReadPosRankSum=0.536;SOR=0.275;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:209,18,0
chr2	113321900	rs41280572	T	C	4090.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.754e+00;DB;DP=90;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.817;SOR=0.666;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2805,270,0
chr2	113322346	rs3816141	T	G	106.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=2.833;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	113326281	rs6746874	C	G	2222.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;DB;DP=27;ExcessHet=3.0103;FS=6.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=-7.150e-01;SOR=0.192;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:855,81,0
chr2	113326502	rs13010814	C	T	3728.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.500e-02;DB;DP=44;ExcessHet=3.0103;FS=1.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=0.687;SOR=0.946;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1384,132,0
chr2	113332241	rs56081241	G	C	116.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.02;SOR=1.609;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr2	113332300	.	TAAAAA	T	188.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=1.15;SOR=0.527;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:12:81,0,12
chr2	113342566	rs719668	C	T	452.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=5.136;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr2	113343488	rs3789722	A	T	1817.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.14;SOR=3.745;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:969,78,0
chr2	113344047	rs752992	T	C	12553.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=158;ExcessHet=3.0103;FS=0.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.76;ReadPosRankSum=2.26;SOR=0.612;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,158:158:99:5137,473,0
chr2	113346413	rs3748024	C	G	1873.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.390e-01;DB;DP=37;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=1.37;SOR=0.680;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1257,111,0
chr2	113346512	rs1047652	A	C	2258.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.490e-01;DB;DP=28;ExcessHet=3.0103;FS=27.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=-1.030e+00;SOR=2.170;VQSLOD=9.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:839,84,0
chr2	113404708	rs4849091	G	A	2716.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812e+00;DB;DP=125;ExcessHet=3.9794;FS=1.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.50;SOR=0.581;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,54:125:99:1216,0,1858
chr2	113414986	rs3827758	A	G	244.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=0.431;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:107,0,29
chr2	113417566	rs4849093	T	A	853.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=-6.520e-01;SOR=1.688;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,143
chr2	113418428	rs4067423	T	TCTTTA	929.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.29;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:235,0,268
chr2	113418939	rs35056357	G	C	275.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=19;ExcessHet=3.0103;FS=7.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-9.910e-01;SOR=0.037;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:284,0,382
chr2	113478889	rs2063918	A	G	1491.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.47;SOR=5.670;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr2	113479614	rs13386452	G	A	6082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=237;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.121;SOR=0.673;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:135,102:237:99:2439,0,3428
chr2	113479745	rs34781106	AC	A	18643.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=180;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.39;ReadPosRankSum=1.55;SOR=0.891;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5605,539,0
chr2	113480491	rs10210602	T	C	4213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.86;QD=32.18;SOR=0.784;VQSLOD=3.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,28:28:90:1|1:113480491_T_C:1349,90,0:113480491
chr2	113480493	.	G	GCCCC	4711.73	PASS	AC=2;AF=1.00;AN=2;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.87;QD=34.98;SOR=0.874;VQSLOD=4.16;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:99:1|1:113480491_T_C:1485,99,0:113480491
chr2	113480495	.	A	AATCCTGC	5071.73	PASS	AC=2;AF=1.00;AN=2;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.88;QD=30.37;SOR=1.146;VQSLOD=4.44;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:113480491_T_C:1530,102,0:113480491
chr2	113480498	rs11271643	C	CTGGTGCTGCCCCCAAGGGGTG	6411.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=34.57;SOR=1.480;VQSLOD=5.04;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:113480491_T_C:1890,126,0:113480491
chr2	113480556	rs34912983	GC	G	5057.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-01;DB;DP=75;ExcessHet=3.9794;FS=0.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=-3.250e-01;SOR=0.636;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,34:75:99:945,0,1142
chr2	113480938	.	G	GCACACACACACACACACA,GCACACACACACACA	4287.27	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MQ=58.85;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.166;VQSLOD=5.79;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,6,17:26:99:1343,693,633,306,0,221
chr2	113481439	rs13384583	T	A	3836.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.81;DB;DP=104;ExcessHet=3.9794;FS=1.631;MQ=59.97;MQRankSum=1.08;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=1.13;SOR=0.837;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,55:104:99:1711,0,1345
chr2	113481547	rs2063919	A	G	10237.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=0.775;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2898,246,0
chr2	113482779	rs4849116	A	C	18614.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=0.747;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,175:175:99:5359,525,0
chr2	113484319	rs2138604	G	A	20852.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=1.068;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,216:216:99:6814,647,0
chr2	113484353	rs2138605	A	G	15957.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=1.705;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5362,484,0
chr2	113484441	rs2138606	T	G	1225.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=42;ExcessHet=3.9794;FS=1.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.174;SOR=1.175;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:602,0,829
chr2	113486941	rs12475027	C	T	663.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-4.310e-01;SOR=0.826;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,149
chr2	113498566	rs3811040	A	G	3775.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.950e-01;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=-6.270e-01;SOR=0.671;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:567,0,777
chr2	113503830	rs6542088	C	T	1100.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=6.869;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	113513504	rs4848298	A	G	1170.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.33;ReadPosRankSum=0.00;SOR=3.545;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:190,0,138
chr2	113513825	rs6731822	T	C	12185.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.02;SOR=0.709;VQSLOD=4.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3923,369,0
chr2	113514836	.	CTTAT	C	273.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DP=11;ExcessHet=3.0103;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=1.90;SOR=2.833;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:282,0,235
chr2	113520129	rs36093393	G	A	509.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.810e-01;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-1.075e+00;SOR=0.627;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:518,0,752
chr2	113532885	rs3783550	G	T	1692.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=1.893;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1709,156,0
chr2	113535395	rs2071376	G	T	1123.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.03;SOR=2.833;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1140,99,0
chr2	113535438	rs2071375	C	T	452.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.088e+00;DB;DP=37;ExcessHet=3.0103;FS=1.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-1.247e+00;SOR=0.404;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:461,0,596
chr2	113535770	rs375854642	GGTGT	G,GGT	463.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.33;ReadPosRankSum=0.098;SOR=1.802;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,3:9:58:317,76,58,167,0,141
chr2	113537223	rs17561	C	A	752.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=-6.320e-01;SOR=0.839;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,26:45:99:761,0,540
chr2	113537339	rs2856841	A	G	241.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.16;ReadPosRankSum=1.53;SOR=2.833;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:16:250,0,16
chr2	113539972	rs2856838	G	A	65.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:74,0,29
chr2	113540084	rs2071373	G	A	392.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.15;SOR=1.802;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:409,33,0
chr2	113540177	rs1894399	C	T	579.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575e+00;DB;DP=41;ExcessHet=3.0103;FS=7.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.556;SOR=0.160;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:588,0,506
chr2	113540205	rs1609682	G	T	1732.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.68;SOR=1.524;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1749,159,0
chr2	113588755	rs1143640	CAA	C	333.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.572;SOR=1.329;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,9:21:99:342,0,473
chr2	113588793	rs1143639	C	T	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e-01;DB;DP=47;ExcessHet=3.0103;FS=1.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.398;SOR=0.985;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:534,0,693
chr2	113590390	rs1143634	G	A	1274.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460e-01;DB;DP=89;ExcessHet=3.0103;FS=2.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.635;SOR=1.047;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,49:89:99:1283,0,997
chr2	113591275	rs3136558	A	G	615.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=-8.800e-02;SOR=0.665;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,14:17:72:438,0,72
chr2	113670834	rs3811042	G	A	295.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=0.524;SOR=0.368;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:114,0,66
chr2	113671303	rs3811045	T	C	7492.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=109;ExcessHet=3.0103;FS=1.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=0.382;SOR=0.848;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,45:109:99:1085,0,1576
chr2	113671378	rs3811046	G	T	8023.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=122;ExcessHet=3.0103;FS=1.637;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-2.580e-01;SOR=0.827;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,53:122:99:1280,0,1758
chr2	113671410	rs3811047	A	G	7116.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.950e-01;DB;DP=106;ExcessHet=3.0103;FS=4.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=0.294;SOR=1.021;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,51:106:99:1191,0,1342
chr2	113671518	rs3811048	G	A	2151.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=1.41;SOR=0.560;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:341,0,479
chr2	113672509	rs2723176	A	C	745.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=5.892;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:330,24,0
chr2	113675080	rs2723186	A	G	1205.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.48;SOR=2.833;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:481,42,0
chr2	113675890	rs10638212	G	GTC	312.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=1.83;SOR=2.303;VQSLOD=6.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0
chr2	113675959	rs2723191	G	T	761.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.60;SOR=2.737;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	113742734	rs7584409	G	A	1326.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=20;ExcessHet=3.9794;FS=4.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=0.561;SOR=0.306;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:216,0,369
chr2	113763575	rs895497	A	G	7459.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.313e+00;DB;DP=100;ExcessHet=3.0103;FS=2.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=0.230;SOR=0.514;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2952,300,0
chr2	113764419	rs28947168	T	C	254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-1.085e+00;SOR=0.301;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:263,0,287
chr2	113765780	rs2305151	C	T	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523e+00;DB;DP=27;ExcessHet=3.0103;FS=3.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=-9.830e-01;SOR=0.201;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,19:27:99:534,0,213
chr2	113765934	.	CT	C	107.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DP=9;ExcessHet=3.9794;FS=1.957;MQ=57.32;MQRankSum=0.431;QD=7.66;ReadPosRankSum=0.674;SOR=0.634;VQSLOD=0.366;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:9:4:67,0,4
chr2	113766395	rs13394409	A	T	606.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=23.32;SOR=5.421;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:113766395_A_T:217,15,0:113766395
chr2	113766396	rs13394410	A	T	606.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.35;SOR=5.421;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:113766395_A_T:217,15,0:113766395
chr2	113783570	rs13030063	C	T	2103.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=0.646;SOR=0.973;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:294,0,391
chr2	113783909	rs6744874	A	T	4644.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=-5.330e-01;SOR=0.640;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1743,138,0
chr2	113785020	rs12711747	A	G	2020.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=0.315;SOR=1.416;VQSLOD=6.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,15:21:99:456,0,189
chr2	113785202	rs11673918	G	A	6727.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130e-01;DB;DP=99;ExcessHet=3.9794;FS=1.018;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=0.602;SOR=0.604;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,67:99:99:1865,0,716
chr2	113785727	rs1562304	A	G	2095.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=2.584;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:327,27,0
chr2	113786833	rs3948121	C	G	1038.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.310e-01;DB;DP=7;ExcessHet=3.0103;FS=6.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.08;ReadPosRankSum=1.04;SOR=2.517;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:290,21,0
chr2	113789316	rs2305150	C	T	1284.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.365;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.151;SOR=0.603;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:120,0,310
chr2	113816940	rs2278716	C	G	2331.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=64;ExcessHet=1.5490;FS=2.596;MQ=60.00;MQRankSum=0.00;QD=22.86;ReadPosRankSum=-1.750e-01;SOR=0.997;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,17:64:99:0|1:113816940_C_G:597,0,2552:113816940
chr2	113816942	rs2278717	A	C	2331.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=67;ExcessHet=1.5490;FS=1.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=-7.720e-01;SOR=0.934;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,19:67:99:0|1:113816940_C_G:597,0,2552:113816940
chr2	113818632	rs2251872	G	A	2979.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=50;ExcessHet=3.9794;FS=0.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=2.30;SOR=0.817;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,21:50:99:550,0,743
chr2	113818702	rs2515395	G	C	1055.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=-2.070e-01;SOR=1.514;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:210,0,333
chr2	113818727	rs2251876	A	G	811.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.280e-01;DB;DP=8;ExcessHet=3.9794;FS=4.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=1.24;SOR=2.683;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:57:57,0,223
chr2	113818738	rs1374285	G	A	655.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.29;ReadPosRankSum=1.07;SOR=1.302;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:66:66,0,190
chr2	113819536	rs2472187	A	G	1797.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.09;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.54;ReadPosRankSum=2.92;SOR=1.926;VQSLOD=21.76;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,12:23:99:449,0,385
chr2	113819614	rs2252007	T	C	5527.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=79;ExcessHet=3.9794;FS=3.258;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=0.510;SOR=0.450;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,49:79:99:1398,0,757
chr2	113830201	rs3811051	T	G	3787.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DB;DP=62;ExcessHet=3.9794;FS=0.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-8.440e-01;SOR=0.789;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,20:62:99:505,0,1216
chr2	113830563	rs12469822	G	A	4771.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=2.127;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1237,108,0
chr2	113830582	rs4849150	A	C	4191.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=2.894;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1153,90,0
chr2	113830688	rs4145013	G	A	1014.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=6.518;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:449,33,0
chr2	113832312	rs6761276	T	C	8278.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=1.107;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2346,225,0
chr2	113832333	rs6743376	C	A	6979.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=1.353;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1910,185,0
chr2	113877495	rs928940	G	T	2578.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=1.771;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:931,87,0
chr2	113887335	rs2232354	T	G	557.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=2.179;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:574,51,0
chr2	113888900	rs380092	T	A	2770.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=3.489;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:991,78,0
chr2	113940681	rs3748914	T	C	12559.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=1.117;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4134,372,0
chr2	113940839	rs4849167	G	C	22832.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.097;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,231:231:99:7333,692,0
chr2	113942903	rs1975535	A	C	5125.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=0.821;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1536,156,0
chr2	113943470	rs2241976	A	G	17708.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=1.073;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,179:179:99:5708,537,0
chr2	113951924	rs6542124	C	A	167.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=-4.310e-01;SOR=0.892;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,160
chr2	113953111	.	C	CGGAT	786.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.105;SOR=0.914;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:99:105,0,338
chr2	113953401	rs923693	A	G	13236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=0.873;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4403,390,0
chr2	113953508	rs6755077	G	A	2251.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058e+00;DB;DP=79;ExcessHet=3.9794;FS=5.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.226;SOR=0.995;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,40:79:99:1070,0,1113
chr2	113953984	rs7603621	G	A	940.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=31;ExcessHet=3.9794;FS=4.064;MQ=60.00;MQRankSum=0.00;QD=17.74;ReadPosRankSum=-3.560e-01;SOR=1.781;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:528,0,416
chr2	113956941	rs2305132	T	A	716.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-5.600e-01;SOR=1.002;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:467,0,267
chr2	113977454	rs2289897	G	A	2267.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=27;ExcessHet=3.9794;FS=3.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=-6.400e-02;SOR=0.341;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,26:27:42:1005,42,0
chr2	113977862	rs4849175	T	G	1171.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=3.545;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:397,36,0
chr2	113993344	rs7589901	A	C	614.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.36;ReadPosRankSum=-6.740e-01;SOR=2.200;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:266,21,0
chr2	113993385	rs7576384	C	G	277.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.85;SOR=2.584;VQSLOD=18.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	113994417	rs1110839	G	T	1343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=54;ExcessHet=3.9794;FS=4.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-9.160e-01;SOR=1.274;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,22:54:99:584,0,772
chr2	113994461	rs3738913	G	A	1046.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=22;ExcessHet=3.9794;FS=1.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=-3.900e-02;SOR=0.290;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,17:22:99:529,0,135
chr2	113994510	rs11898670	A	G	1542.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.15;SOR=5.943;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:294,24,0
chr2	113996647	rs35990380	C	CT	2364.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DB;DP=87;ExcessHet=6.9897;FS=1.542;MQ=59.90;MQRankSum=-5.110e-01;QD=9.85;ReadPosRankSum=-3.270e-01;SOR=0.807;VQSLOD=0.541;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,41:87:99:811,0,740
chr2	113999534	rs4849186	G	C	4615.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.269;DB;DP=114;ExcessHet=1.5490;FS=0.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=-4.590e-01;SOR=0.641;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3500,342,0
chr2	113999736	rs13015478	G	T	1527.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.498e+00;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=0.015;SOR=0.735;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1175,104,0
chr2	114000458	rs902691	C	A	4092.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.11;ReadPosRankSum=1.39;SOR=1.134;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,44:45:99:1510,125,0
chr2	114002510	rs12998725	G	C	77.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.68;SOR=2.303;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	114004237	rs11678394	G	A	1290.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.40;SOR=6.994;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:281,21,0
chr2	114017029	rs6734610	A	G	8546.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=0.755;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2770,258,0
chr2	114017282	rs35759685	C	CATTA	1357.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=4.548;VQSLOD=5.71;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr2	114020828	rs2305131	G	T	3467.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.67;SOR=2.618;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1241,107,0
chr2	114035923	rs1867763	A	G	38883.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.904;DB;DP=608;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=0.362;SOR=1.048;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,608:608:99:17657,1823,0
chr2	114196813	rs200274994	C	T	411.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=46.37;MQRankSum=-3.398e+00;QD=11.11;ReadPosRankSum=0.890;SOR=0.544;VQSLOD=-3.797e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:206,0,378
chr2	114201171	rs141309871	C	A	137.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=47.89;MQRankSum=-3.190e+00;QD=2.54;ReadPosRankSum=-1.744e+00;SOR=0.741;VQSLOD=-4.361e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,4:27:38:38,0,744
chr2	114210817	rs199514655	GT	G	869.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=51;ExcessHet=3.9794;FS=1.440;MQ=57.62;MQRankSum=-1.779e+00;QD=9.35;ReadPosRankSum=-2.640e-01;SOR=0.563;VQSLOD=0.416;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,24:51:99:517,0,600
chr2	114210921	rs1212279	C	T	172.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=54.50;MQRankSum=0.398;NEGATIVE_TRAIN_SITE;QD=19.14;ReadPosRankSum=-1.437e+00;SOR=0.892;VQSLOD=-2.832e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:181,0,150
chr2	114210995	rs71232148	A	T	54.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=42.30;MQRankSum=-1.383e+00;QD=13.64;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=-4.411e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,68
chr2	114213299	rs200577346	AT	A	404.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850e-01;DB;DP=17;ExcessHet=6.9897;FS=2.325;MQ=44.72;MQRankSum=-1.140e+00;QD=7.35;ReadPosRankSum=0.654;SOR=0.250;VQSLOD=-1.085e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:9:266,0,9
chr2	114220055	rs1210133	T	C	3282.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DB;DP=106;ExcessHet=3.9794;FS=2.098;MQ=56.13;MQRankSum=1.81;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.53;SOR=0.593;VQSLOD=-1.109e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1216,0,1447
chr2	114239551	rs199518847	G	T	111.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085e+00;DB;DP=7;ExcessHet=3.9794;FS=5.441;MQ=50.08;MQRankSum=-2.189e+00;NEGATIVE_TRAIN_SITE;QD=5.31;ReadPosRankSum=0.484;SOR=0.035;VQSLOD=-1.800e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:68:68,0,150
chr2	114242770	rs115309571	C	G	434.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=49.72;MQRankSum=-2.872e+00;NEGATIVE_TRAIN_SITE;QD=7.50;ReadPosRankSum=0.728;SOR=0.559;VQSLOD=-3.635e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:316,27,0
chr2	114256687	rs2757968	A	C	192.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.9794;FS=3.310;MQ=49.15;MQRankSum=-5.240e-01;QD=12.81;ReadPosRankSum=0.200;SOR=0.141;VQSLOD=-2.277e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,110
chr2	114256759	rs2748031	A	G	456.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=52.52;MQRankSum=-3.529e+00;NEGATIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=0.797;SOR=0.701;VQSLOD=-3.688e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:204,0,329
chr2	114256840	rs147906017	C	T	963.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DB;DP=43;ExcessHet=3.9794;FS=3.046;MQ=49.62;MQRankSum=-4.212e+00;NEGATIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=1.71;SOR=0.400;VQSLOD=-3.486e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,15:43:99:0|1:114256840_C_T:515,0,1090:114256840
chr2	114256859	rs189095552	C	T	913.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DB;DP=40;ExcessHet=3.9794;FS=3.094;MQ=49.74;MQRankSum=-4.414e+00;NEGATIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.440;SOR=0.525;VQSLOD=-3.402e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,14:40:99:0|1:114256840_C_T:499,0,1050:114256840
chr2	114256978	rs2757970	A	C	33.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=35;ExcessHet=3.0103;FS=5.059;MQ=57.53;MQRankSum=-5.241e+00;QD=0.96;ReadPosRankSum=1.14;SOR=1.514;VQSLOD=-3.848e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,4:35:41:41,0,866
chr2	114257555	rs200366671	T	C	59.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.980e-01;DB;DP=34;ExcessHet=3.0103;FS=4.121;MQ=49.39;MQRankSum=-3.429e+00;QD=1.76;ReadPosRankSum=-2.238e+00;SOR=1.213;VQSLOD=-3.478e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,6:34:68:68,0,822
chr2	114340433	rs6542146	A	G	1068.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=18;ExcessHet=6.9897;FS=1.631;MQ=46.17;MQRankSum=-3.623e+00;QD=17.82;ReadPosRankSum=-4.990e-01;SOR=1.193;VQSLOD=-3.393e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:317,0,194
chr2	114340454	rs7561824	G	A	206.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e-01;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=42.12;MQRankSum=-1.504e+00;QD=3.12;ReadPosRankSum=1.91;SOR=0.821;VQSLOD=-4.946e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,4:28:37:37,0,698
chr2	114340469	.	G	A	108.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.895e+00;DP=31;ExcessHet=3.9794;FS=4.125;MQ=41.41;MQRankSum=-2.345e+00;QD=1.78;ReadPosRankSum=-9.000e-02;SOR=0.264;VQSLOD=-3.827e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,6:31:56:56,0,751
chr2	114340494	rs7349209	G	A	950.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=38;ExcessHet=6.9897;FS=8.623;MQ=45.78;MQRankSum=-6.440e-01;QD=7.04;ReadPosRankSum=-5.030e-01;SOR=1.425;VQSLOD=-3.743e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,12:38:99:247,0,640
chr2	114340628	rs7589328	C	T	366.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=48;ExcessHet=6.9897;FS=0.000;MQ=50.03;MQRankSum=-1.337e+00;NEGATIVE_TRAIN_SITE;QD=2.43;ReadPosRankSum=0.559;SOR=0.749;VQSLOD=-3.735e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,10:48:99:144,0,891
chr2	114340663	rs6542147	G	A	2551.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=44;ExcessHet=6.9897;FS=0.000;MQ=46.16;MQRankSum=-4.216e+00;QD=20.75;ReadPosRankSum=0.171;SOR=0.760;VQSLOD=-3.614e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,31:44:99:0|1:114340663_G_A:1191,0,453:114340663
chr2	114340677	rs6542148	C	A	2309.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388e+00;DB;DP=41;ExcessHet=6.9897;FS=0.786;MQ=44.73;MQRankSum=-3.810e+00;QD=20.44;ReadPosRankSum=-1.120e-01;SOR=0.590;VQSLOD=-3.792e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,28:41:99:0|1:114340663_G_A:1148,0,459:114340663
chr2	114340706	rs2258969	A	G	1705.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.127;DB;DP=34;ExcessHet=6.9897;FS=3.394;MQ=43.36;MQRankSum=-4.440e+00;QD=18.54;ReadPosRankSum=-5.890e-01;SOR=1.140;VQSLOD=-3.650e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,24:34:99:597,0,182
chr2	114340786	rs7349443	T	C	281.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=40.79;MQRankSum=-1.645e+00;QD=12.82;ReadPosRankSum=0.328;SOR=0.874;VQSLOD=-4.780e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:85:98,0,85
chr2	114351736	rs201037160	G	A	55.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=4.260;MQ=45.51;MQRankSum=-1.292e+00;QD=6.94;ReadPosRankSum=0.319;SOR=0.061;VQSLOD=-2.403e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:64:64,0,176
chr2	114352806	rs2974807	T	C	961.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.690e-01;DB;DP=28;ExcessHet=6.9897;FS=1.791;MQ=47.07;MQRankSum=-3.042e+00;QD=10.46;ReadPosRankSum=1.19;SOR=0.946;VQSLOD=-3.716e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:208,0,594
chr2	114352837	rs4499434	C	T	129.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094e+00;DB;DP=29;ExcessHet=3.0103;FS=1.585;MQ=48.56;MQRankSum=-3.038e+00;QD=4.46;ReadPosRankSum=-8.730e-01;SOR=0.385;VQSLOD=-3.819e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,9:29:99:138,0,609
chr2	114353158	.	C	T	700.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e+00;DP=71;ExcessHet=3.0103;FS=5.128;MQ=42.20;MQRankSum=-1.574e+00;QD=9.86;ReadPosRankSum=0.553;SOR=0.278;VQSLOD=-3.054e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,30:71:99:709,0,1129
chr2	114353229	.	AC	A	751.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DP=183;ExcessHet=3.0103;FS=1.539;MQ=40.32;MQRankSum=0.793;QD=4.11;ReadPosRankSum=0.936;SOR=0.522;VQSLOD=0.296;culprit=QD	GT:AD:DP:GQ:PL	0/1:148,35:183:99:760,0,4976
chr2	114353493	rs186599102	C	A	403.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=58.89;MQRankSum=1.10;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-1.264e+00;SOR=0.693;VQSLOD=0.511;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:412,0,427
chr2	114353635	rs200093309	A	G	1046.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=31;ExcessHet=6.9897;FS=5.186;MQ=52.72;MQRankSum=0.022;NEGATIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-3.010e-01;SOR=1.142;VQSLOD=-1.700e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,6:31:99:155,0,700
chr2	114354996	.	G	A	350.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075e+00;DP=10;ExcessHet=3.9794;FS=0.000;MQ=41.67;MQRankSum=0.346;QD=13.50;ReadPosRankSum=0.108;SOR=1.071;VQSLOD=-4.901e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:206,0,128
chr2	114355054	.	C	T	81.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DP=25;ExcessHet=3.9794;FS=3.948;MQ=39.97;MQRankSum=-1.211e+00;QD=1.89;ReadPosRankSum=-3.560e-01;SOR=1.508;VQSLOD=-4.901e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,3:25:53:53,0,558
chr2	114355162	.	G	A	30.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DP=27;ExcessHet=3.0103;FS=2.738;MQ=40.13;MQRankSum=0.988;QD=1.12;ReadPosRankSum=1.12;SOR=1.702;VQSLOD=-4.939e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,3:27:39:39,0,797
chr2	114355824	.	A	G	106.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;DP=14;ExcessHet=3.9794;FS=1.872;MQ=52.31;MQRankSum=-2.543e+00;NEGATIVE_TRAIN_SITE;QD=2.65;ReadPosRankSum=1.32;SOR=0.312;VQSLOD=-3.705e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:75:75,0,321
chr2	114355968	.	G	A	564.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.14;DP=71;ExcessHet=6.9897;FS=8.197;MQ=44.88;MQRankSum=-3.564e+00;QD=2.63;ReadPosRankSum=-2.023e+00;SOR=1.510;VQSLOD=-4.986e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,9:71:99:0|1:114355960_A_G:187,0,2588:114355960
chr2	114356059	rs143600323	G	A	1489.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DB;DP=170;ExcessHet=3.9794;FS=3.335;MQ=42.10;MQRankSum=1.06;QD=4.07;ReadPosRankSum=1.71;SOR=0.556;VQSLOD=-4.761e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:125,45:170:99:795,0,3111
chr2	114357862	rs115400373	C	T	1943.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.070e+00;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=47.35;MQRankSum=-4.728e+00;QD=11.78;ReadPosRankSum=2.17;SOR=0.725;VQSLOD=-4.373e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1233,117,0
chr2	114358432	rs200093365	TGGG	T	1486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=33;ExcessHet=3.9794;FS=1.936;MQ=46.45;MQRankSum=-1.441e+00;QD=17.91;ReadPosRankSum=0.599;SOR=0.454;VQSLOD=0.296;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,12:33:99:0|1:114358432_TGGG_T:441,0,2576:114358432
chr2	114358437	.	C	T	1486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443e+00;DP=33;ExcessHet=3.9794;FS=3.127;MQ=46.52;MQRankSum=-1.470e+00;QD=17.91;SOR=0.405;VQSLOD=-2.865e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,12:33:99:0|1:114358432_TGGG_T:441,0,2576:114358432
chr2	114358438	.	CA	C	1486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.420e-01;DP=33;ExcessHet=3.9794;FS=1.952;MQ=46.54;MQRankSum=-1.470e+00;QD=18.12;SOR=0.426;VQSLOD=0.216;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,12:33:99:0|1:114358432_TGGG_T:441,0,2576:114358432
chr2	114358772	rs78505129	G	A	1617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=42.91;MQRankSum=1.29;QD=13.36;ReadPosRankSum=1.62;SOR=0.657;VQSLOD=-4.841e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,31:55:99:803,0,550
chr2	114359070	rs146209431	G	A	791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=41;ExcessHet=3.9794;FS=1.043;MQ=49.29;MQRankSum=-5.080e-01;QD=10.99;ReadPosRankSum=0.196;SOR=0.902;VQSLOD=-3.339e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:538,0,431
chr2	114369579	rs374990696	T	C	1050.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=65;ExcessHet=3.9794;FS=4.665;MQ=44.78;MQRankSum=3.04;QD=12.50;ReadPosRankSum=3.32;SOR=0.309;VQSLOD=-3.752e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,23:65:99:0|1:114369557_A_G:830,0,1463:114369557
chr2	114369646	rs140430971	C	A	4824.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=48.44;QD=34.22;SOR=0.736;VQSLOD=-3.105e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2282,199,0
chr2	114369662	.	C	T	591.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DP=62;ExcessHet=3.9794;FS=3.528;MQ=50.64;MQRankSum=3.66;NEGATIVE_TRAIN_SITE;QD=7.58;ReadPosRankSum=-1.351e+00;SOR=1.210;VQSLOD=-3.828e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,18:62:99:0|1:114369662_C_T:520,0,1793:114369662
chr2	114369757	.	G	A	214.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-01;DP=41;ExcessHet=3.9794;FS=3.130;MQ=44.26;MQRankSum=-4.020e-01;QD=2.85;ReadPosRankSum=-4.840e-01;SOR=1.241;VQSLOD=-4.047e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,4:41:57:0|1:114369757_G_A:57,0,1542:114369757
chr2	114369762	.	T	C	250.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DP=41;ExcessHet=3.9794;FS=1.459;MQ=44.49;MQRankSum=-4.020e-01;QD=3.38;ReadPosRankSum=-4.840e-01;SOR=1.179;VQSLOD=-4.392e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,4:41:57:0|1:114369757_G_A:57,0,1542:114369757
chr2	114369766	.	G	A	259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420e+00;DP=41;ExcessHet=3.9794;FS=1.450;MQ=44.45;MQRankSum=-4.020e-01;QD=3.50;ReadPosRankSum=-5.930e-01;SOR=1.063;VQSLOD=-4.532e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,4:41:54:0|1:114369757_G_A:54,0,1584:114369757
chr2	114369771	rs145906086	C	T	479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=42;ExcessHet=3.9794;FS=13.373;MQ=44.10;MQRankSum=1.72;QD=6.39;ReadPosRankSum=2.77;SOR=0.101;VQSLOD=-4.461e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,14:42:99:298,0,867
chr2	114369783	.	G	A	346.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DP=41;ExcessHet=3.9794;FS=3.064;MQ=43.23;MQRankSum=-9.880e-01;QD=4.55;ReadPosRankSum=-9.370e-01;SOR=1.316;VQSLOD=-4.168e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,5:41:99:0|1:114369757_G_A:102,0,1497:114369757
chr2	114369793	.	G	C	352.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DP=37;ExcessHet=3.9794;FS=3.091;MQ=43.20;MQRankSum=-1.013e+00;QD=4.96;ReadPosRankSum=-8.000e-01;SOR=1.371;VQSLOD=-4.058e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,5:37:99:0|1:114369757_G_A:105,0,1455:114369757
chr2	114369795	.	A	G	358.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DP=37;ExcessHet=3.9794;FS=3.091;MQ=43.20;MQRankSum=-1.013e+00;QD=5.04;ReadPosRankSum=-5.080e-01;SOR=1.371;VQSLOD=-3.997e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,5:37:99:0|1:114369757_G_A:114,0,1329:114369757
chr2	114369811	rs373861612	G	T	554.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=35;ExcessHet=3.9794;FS=5.950;MQ=43.42;MQRankSum=0.635;QD=7.92;ReadPosRankSum=2.36;SOR=1.659;VQSLOD=-4.122e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:35:99:319,0,376
chr2	114369818	rs201486476	G	A	367.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.17;DB;DP=34;ExcessHet=3.9794;FS=1.441;MQ=43.69;MQRankSum=-9.330e-01;QD=5.40;ReadPosRankSum=3.13;SOR=1.112;VQSLOD=-4.752e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,5:34:99:0|1:114369757_G_A:123,0,1203:114369757
chr2	114369935	rs72611937	T	G	277.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=54.57;QD=34.63;SOR=2.833;VQSLOD=2.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	114386338	rs149500718	G	A	1584.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=49;ExcessHet=3.9794;FS=2.517;MQ=45.95;MQRankSum=0.706;QD=15.09;ReadPosRankSum=0.529;SOR=0.834;VQSLOD=-3.790e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,20:49:99:597,0,724
chr2	114391995	rs57719031	GC	G	826.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=42.27;MQRankSum=0.572;QD=23.63;ReadPosRankSum=-1.290e+00;SOR=1.352;VQSLOD=-4.110e-02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:114391988_C_T:153,0,189:114391988
chr2	114392865	rs199887795	GCTT	G	1349.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=32.43;MQRankSum=0.356;QD=24.53;ReadPosRankSum=-3.850e-01;SOR=1.262;VQSLOD=0.402;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:99:484,0,202
chr2	114398528	rs147189052	C	T	1606.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.246e+00;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=41.44;MQRankSum=-2.057e+00;QD=12.26;ReadPosRankSum=-1.911e+00;SOR=0.657;VQSLOD=-5.067e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,67:131:99:1615,0,1534
chr2	114399145	rs114994309	G	A	1932.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DB;DP=48;ExcessHet=3.9794;FS=4.741;MQ=56.21;MQRankSum=0.843;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.530;SOR=0.336;VQSLOD=-2.450e-02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:864,0,660
chr2	114425685	rs11682527	G	T	1009.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=-6.920e-01;SOR=1.552;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:114425685_G_T:456,33,0:114425685
chr2	114425697	rs145623386	CCA	C	561.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=0.00;SOR=0.536;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:114425685_G_T:150,0,240:114425685
chr2	114426115	rs80314553	T	C	16165.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=258;ExcessHet=3.9794;FS=4.407;MQ=54.48;MQRankSum=-8.516e+00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-1.390e-01;SOR=0.974;VQSLOD=-2.728e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:145,113:258:99:2930,0,3808
chr2	114475652	rs2122096	C	G	1047.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.72;SOR=5.211;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:318,24,0
chr2	114476482	rs59718134	GAAAGAAAGAAAGAAAGAAAGAA	G	106.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.73;ReadPosRankSum=1.15;SOR=0.693;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:115,0,114
chr2	114476582	rs6741521	C	A	911.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DB;DP=29;ExcessHet=3.9794;FS=1.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.876;SOR=1.038;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:458,0,358
chr2	114478846	.	C	T	648.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709e+00;DP=73;ExcessHet=3.0103;FS=0.887;MQ=60.00;MQRankSum=0.00;QD=8.88;ReadPosRankSum=-2.010e-01;SOR=0.824;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,31:73:99:657,0,1113
chr2	114480812	rs112237880	A	AAAC	3189.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;DB;DP=23;ExcessHet=3.0103;FS=1.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.49;ReadPosRankSum=-1.201e+00;SOR=0.481;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1035,69,0
chr2	114480881	rs73955056	A	G	327.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.220e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.374;SOR=0.784;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:61:177,0,61
chr2	114480938	rs35737031	C	CAA	346.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.34;SOR=4.407;VQSLOD=5.85;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	114486907	rs4849269	T	C	392.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=-5.010e-01;SOR=0.776;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:74,0,31
chr2	114492135	rs2305254	C	T	1860.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.680e-01;DB;DP=78;ExcessHet=6.9897;FS=3.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.353;SOR=0.612;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,22:78:99:417,0,1564
chr2	114493221	rs10172842	G	A	359.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=0.464;SOR=1.765;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	114493260	rs12624301	A	G	222.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=1.83;SOR=0.859;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,112
chr2	114493509	rs142249018	CT	C	1031.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-02;DB;DP=33;ExcessHet=3.9794;FS=5.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=1.41;SOR=0.319;VQSLOD=6.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,14:33:99:347,0,504
chr2	114493524	rs10199704	C	T	1905.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.560e-01;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-8.850e-01;SOR=0.715;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:486,0,349
chr2	114500131	rs13004622	C	A	169.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:69,0,33
chr2	114501112	rs3748906	C	T	417.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=18;ExcessHet=3.9794;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.02;ReadPosRankSum=1.34;SOR=1.075;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,5:18:99:118,0,337
chr2	114501242	rs3748907	T	C	1700.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.191;SOR=0.683;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:747,0,614
chr2	114513386	rs7578249	C	T	2599.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120e-01;DB;DP=63;ExcessHet=6.9897;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.174;SOR=0.583;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,22:63:99:585,0,1121
chr2	114513407	rs112020441	T	C	1255.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-02;DB;DP=75;ExcessHet=3.0103;FS=2.061;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-6.290e-01;SOR=0.424;VQSLOD=6.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,48:75:99:1264,0,633
chr2	114513787	rs4538208	C	G	8832.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=1.318;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2588,240,0
chr2	114513901	rs4321376	C	T	4968.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e+00;DB;DP=146;ExcessHet=6.9897;FS=2.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-9.130e-01;SOR=0.876;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,67:146:99:1541,0,1853
chr2	114514098	rs7592689	A	C	1328.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=11;ExcessHet=6.9897;FS=1.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=-3.650e-01;SOR=0.351;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:133,0,211
chr2	115200657	rs10180693	A	T	137.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.42;SOR=3.258;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr2	115822241	rs59975834	G	C	1619.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e+00;DB;DP=52;ExcessHet=3.9794;FS=0.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=1.32;SOR=0.557;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:668,0,792
chr2	115919301	rs13313771	G	A	186.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=20.71;ReadPosRankSum=-1.368e+00;SOR=3.126;VQSLOD=16.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	115919677	rs7557011	C	G	1810.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.88;SOR=1.292;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:115919677_C_G:945,63,0:115919677
chr2	115919678	rs7573359	T	C	1810.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.80;SOR=1.206;VQSLOD=19.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:115919677_C_G:945,63,0:115919677
chr2	116066984	rs975453	G	A	4598.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.57;SOR=2.355;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1413,120,0
chr2	116099725	rs843403	A	T	11728.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.11;SOR=1.486;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3275,312,0
chr2	116447277	rs35766316	G	A	1195.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=77;ExcessHet=3.0103;FS=3.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=-6.960e-01;SOR=0.356;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,46:77:99:1204,0,779
chr2	116447606	rs62155260	T	C	444.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=-7.660e-01;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:453,0,192
chr2	116497479	rs1550854	A	G	6664.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=1.852;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1681,156,0
chr2	116497528	rs1550853	A	G	3352.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=2.761;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:844,78,0
chr2	116503620	rs140542044	A	G	853.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DB;DP=65;ExcessHet=3.0103;FS=9.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=1.29;SOR=0.168;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,33:65:99:862,0,802
chr2	116503671	rs36044503	G	A	1298.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DB;DP=95;ExcessHet=3.0103;FS=1.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-9.750e-01;SOR=0.501;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1307,0,1183
chr2	116520002	rs62156287	A	G	146.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=0.328;SOR=0.941;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:155,0,109
chr2	116525960	rs1446495	G	A	7932.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=0.757;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2191,217,0
chr2	116534922	rs1374271	A	G	1986.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=90;ExcessHet=3.9794;FS=3.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-2.370e-01;SOR=1.025;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,38:90:99:986,0,1354
chr2	116535086	rs2421339	T	C	2339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.89;SOR=4.029;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:616,45,0
chr2	116539846	rs36082071	GA	G	1552.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DB;DP=34;ExcessHet=1.5490;FS=1.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=0.330;SOR=1.267;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,15:34:99:360,0,499
chr2	116539911	rs75830748	A	G	986.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.187e+00;DB;DP=89;ExcessHet=3.0103;FS=1.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.498;SOR=0.498;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,48:89:99:995,0,1014
chr2	116548526	rs6735355	A	G	1552.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=18;ExcessHet=3.9794;FS=8.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=0.115;SOR=3.258;VQSLOD=15.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:275,0,327
chr2	116548820	rs3738879	C	T	4761.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.180e-01;DB;DP=71;ExcessHet=3.9794;FS=7.277;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-1.359e+00;SOR=1.134;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,39:71:99:963,0,769
chr2	116593675	rs10549769	ATG	A	1196.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.450e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:150,0,107
chr2	116593692	rs62157981	T	A	97.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.81;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:106,0,166
chr2	116593695	rs34212292	G	T	1325.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.460e-01;DB;DP=9;ExcessHet=6.9897;FS=1.005;MQ=60.00;MQRankSum=0.00;QD=19.79;ReadPosRankSum=-9.800e-02;SOR=0.950;VQSLOD=6.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:9:93:138,0,93
chr2	116598431	rs62157986	C	T	830.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DB;DP=96;ExcessHet=3.0103;FS=0.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=-5.060e-01;SOR=0.557;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,35:96:99:839,0,1515
chr2	116598546	rs272011	G	A	2181.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.048e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=-2.220e-01;SOR=0.839;VQSLOD=7.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:990,87,0
chr2	116599659	rs272010	A	T	1835.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.24;DB;DP=37;ExcessHet=3.9794;FS=1.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.545;SOR=0.527;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1270,111,0
chr2	116599927	rs272009	T	C	9003.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=1.151;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1585,163,0
chr2	118575215	rs1052637	C	G	1968.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=42;ExcessHet=6.9897;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=-3.890e-01;SOR=0.835;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:647,0,438
chr2	118575468	rs6737733	C	T	993.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.19;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=0.555;SOR=0.505;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:272,0,256
chr2	118578494	.	C	T	122.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.30;ReadPosRankSum=0.992;SOR=0.330;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:131,0,100
chr2	118578691	rs3214497	TA	T	3806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.74;SOR=1.863;VQSLOD=4.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1269,129,0
chr2	118582936	rs112417042	A	ATAAAG	13629.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=87;ExcessHet=3.0103;FS=2.416;MQ=60.00;MQRankSum=0.00;QD=23.21;ReadPosRankSum=0.956;SOR=0.883;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,86:87:99:3867,192,0
chr2	118677916	rs35891278	T	C	979.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DB;DP=111;ExcessHet=3.0103;FS=1.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=-7.210e-01;SOR=0.849;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,44:111:99:988,0,1561
chr2	118688754	rs971754	T	C	5266.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.484e+00;DB;DP=65;ExcessHet=3.0103;FS=1.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.32;ReadPosRankSum=-1.342e+00;SOR=0.526;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1948,195,0
chr2	118692868	rs12151840	T	G	540.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.04;ReadPosRankSum=-1.890e-01;SOR=0.941;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:227,18,0
chr2	118692929	rs12151445	G	A	1278.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.104e+00;DB;DP=21;ExcessHet=3.9794;FS=1.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=1.94;SOR=1.140;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:712,63,0
chr2	118694393	rs2303333	C	G	3147.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.950e-01;DB;DP=59;ExcessHet=3.9794;FS=8.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=0.482;SOR=0.317;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1721,127,0
chr2	118694579	rs2303332	G	T	274.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.90;ReadPosRankSum=0.712;SOR=1.445;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:69:104,0,69
chr2	118698699	rs2303330	A	G	1389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.199;SOR=0.598;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:479,0,439
chr2	118704478	rs7580124	T	G	4893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.98;SOR=2.692;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1311,125,0
chr2	118705570	rs10186396	A	G	4135.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.016e+00;DB;DP=49;ExcessHet=3.0103;FS=0.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.37;ReadPosRankSum=-1.300e-02;SOR=0.559;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1522,147,0
chr2	118706879	rs1035598	A	G	4772.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.740e-01;DB;DP=60;ExcessHet=3.0103;FS=1.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=0.563;SOR=0.843;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1742,180,0
chr2	118716166	rs1991102	C	T	1776.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.084e+00;DB;DP=32;ExcessHet=3.9794;FS=2.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=1.29;SOR=0.482;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1038,96,0
chr2	118732975	rs6722547	T	C	3592.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=46;ExcessHet=3.0103;FS=7.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=0.608;SOR=0.158;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1593,138,0
chr2	118735395	rs889899	G	A	1785.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.150;DB;DP=16;ExcessHet=3.0103;FS=15.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=0.232;SOR=4.304;VQSLOD=11.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:659,48,0
chr2	118743630	rs33975708	G	A	1310.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.290e-01;DB;DP=113;ExcessHet=3.0103;FS=1.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=1.04;SOR=0.550;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,55:113:99:1319,0,1493
chr2	118743736	.	CTT	C	201.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.470e-01;DP=14;ExcessHet=6.9897;FS=6.293;MQ=59.61;MQRankSum=0.00;QD=5.45;ReadPosRankSum=0.233;SOR=2.833;VQSLOD=3.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,3:14:49:49,0,274
chr2	118743865	rs10864965	T	A	225.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.44;SOR=3.912;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
chr2	118753148	rs10633675	A	ATC	2655.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.681e+00;DB;DP=24;ExcessHet=3.0103;FS=4.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=-3.880e-01;SOR=0.154;VQSLOD=6.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1047,72,0
chr2	118758754	rs1559503	G	T	579.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=-1.960e+00;SOR=2.833;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr2	118764527	rs4849654	T	A	889.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.16;ReadPosRankSum=0.00;SOR=3.528;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr2	118766024	rs10864966	A	G	4568.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=51;ExcessHet=3.0103;FS=1.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.26;ReadPosRankSum=1.52;SOR=1.080;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1908,153,0
chr2	118766449	rs34926808	T	C	137.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=-4.140e-01;SOR=1.329;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:68:146,0,68
chr2	118771566	rs11545372	C	A	13842.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.291;DB;DP=251;ExcessHet=3.9794;FS=1.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=0.987;SOR=0.818;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,250:251:99:7020,736,0
chr2	118771663	rs12477588	A	G	11544.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.42;DB;DP=134;ExcessHet=3.0103;FS=3.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=-1.257e+00;SOR=0.981;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4449,402,0
chr2	118771682	.	TGCCGCC	T,TGCC	6555.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.41;DP=72;ExcessHet=3.9794;FS=2.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=0.956;SOR=0.524;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,43,29:72:99:3016,1216,1160,1802,0,1714
chr2	118850459	rs61226625	T	*,G	2014.76	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.21;DB;DP=61;ExcessHet=1.5490;FS=0.756;MQ=59.18;MQRankSum=-1.065e+00;QD=15.86;ReadPosRankSum=-3.160e-01;SOR=0.576;VQSLOD=-4.981e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,24,37:61:99:1775,1138,1495,714,0,604
chr2	118850591	.	T	G,TGAG	2649.62	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.98;DP=73;ExcessHet=0.4576;FS=1.766;MQ=54.00;MQRankSum=1.73;QD=28.27;ReadPosRankSum=1.47;SOR=0.599;VQSLOD=0.066;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,17,51:73:99:3148,1918,2483,920,0,996
chr2	118850831	.	T	C	752.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DP=112;ExcessHet=3.9794;FS=4.711;MQ=38.33;MQRankSum=-1.820e+00;QD=3.71;ReadPosRankSum=1.70;SOR=0.852;VQSLOD=-5.011e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,14:112:99:269,0,4023
chr2	118850939	.	AGATGAT	A,AGAT	985.14	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.990e-01;DP=56;ExcessHet=0.4576;FS=0.000;MQ=46.33;MQRankSum=-1.629e+00;QD=17.59;ReadPosRankSum=0.00;SOR=0.436;VQSLOD=0.407;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,49,6:56:99:1005,221,168,756,0,763
chr2	118851164	rs113612131	T	G	793.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.04;DB;DP=70;ExcessHet=3.0103;FS=1.326;MQ=45.23;MQRankSum=-4.199e+00;QD=11.33;ReadPosRankSum=-3.860e-01;SOR=0.466;VQSLOD=-3.990e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,25:70:99:802,0,1719
chr2	118851167	rs28970708	T	G	6367.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=76;ExcessHet=3.0103;FS=3.273;MQ=44.30;MQRankSum=0.487;QD=34.60;ReadPosRankSum=0.131;SOR=1.600;VQSLOD=-3.828e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,71:76:0:2738,0,0
chr2	118851943	rs34116355	A	AGATGATGATGAT,AGATGATGATGATGAT	2688.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=50.20;POSITIVE_TRAIN_SITE;QD=32.31;SOR=0.968;VQSLOD=5.38;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,10,13:23:99:1087,533,480,418,0,364
chr2	118866033	rs11407321	G	GA	1367.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.040e-01;DB;DP=41;ExcessHet=3.9794;FS=8.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.486;SOR=0.182;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,23:41:99:733,0,551
chr2	119591683	rs7588093	C	A	867.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842e+00;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-4.390e-01;SOR=0.569;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,14:36:99:355,0,702
chr2	119700096	rs2077344	T	C	3584.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DB;DP=34;ExcessHet=3.0103;FS=2.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.63;ReadPosRankSum=-2.092e+00;SOR=0.367;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1327,102,0
chr2	119728876	rs2278589	G	A	190.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=1.15;SOR=0.859;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:96:96,0,153
chr2	119740290	rs7599352	C	T	288.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=0.363;SOR=0.674;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:92:92,0,241
chr2	119749477	rs2304708	T	G	8488.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290e-01;DB;DP=83;ExcessHet=3.0103;FS=1.412;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=0.224;SOR=0.883;VQSLOD=6.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,45:83:99:1093,0,917
chr2	119749611	rs4848530	C	T	789.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=19;ExcessHet=3.9794;FS=3.570;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=-3.400e-01;SOR=0.242;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:353,0,207
chr2	119749858	rs3765035	A	G	654.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.542e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.27;ReadPosRankSum=0.100;SOR=1.255;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:110,9,0
chr2	119751769	rs139356455	AAAC	A	1877.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.45;ReadPosRankSum=-3.000e-02;SOR=1.681;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:222,0,398
chr2	119914101	rs6758051	T	G	283.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.45;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:81,0,28
chr2	119915132	rs11308896	CG	C	5588.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=59;ExcessHet=3.0103;FS=12.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=-1.290e-01;SOR=2.099;VQSLOD=2.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,29:59:99:769,0,791
chr2	119915249	rs7556873	T	C	11499.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.81;DB;DP=205;ExcessHet=3.9794;FS=0.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=1.05;SOR=0.612;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,104:205:99:2599,0,2266
chr2	119915988	rs6705476	A	G	525.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=12;ExcessHet=1.5490;FS=2.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=1.42;SOR=0.223;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:141,0,199
chr2	119988565	rs838100	G	A	11564.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=0.698;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5118,519,0
chr2	120003642	rs838083	C	T	11650.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=1.235;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3112,278,0
chr2	120005840	rs67985074	TC	T	9591.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=123;ExcessHet=3.0103;FS=5.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=2.33;SOR=0.420;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3694,370,0
chr2	120014985	rs838072	A	G	4049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.83;SOR=5.464;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1361,99,0
chr2	120059895	rs10666292	G	GGAAA	1101.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.63;ReadPosRankSum=0.930;SOR=0.582;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:188,0,320
chr2	120059921	rs8600	C	A	235.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;DB;DP=18;ExcessHet=3.0103;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-4.300e-02;SOR=0.069;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:244,0,288
chr2	120059988	rs1890	T	C	2585.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DB;DP=46;ExcessHet=3.9794;FS=1.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=1.06;SOR=0.882;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:690,0,532
chr2	120060082	rs1052500	T	C	2950.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.845;DB;DP=56;ExcessHet=3.9794;FS=1.285;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.166;SOR=0.577;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,32:56:99:784,0,608
chr2	120078689	rs6719102	T	C	234.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315e+00;DB;DP=20;ExcessHet=3.0103;FS=1.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.837;SOR=1.508;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:243,0,247
chr2	120078778	rs1132267	T	C	4065.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=71;ExcessHet=3.9794;FS=3.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=1.97;SOR=0.972;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,26:71:99:666,0,1165
chr2	120125029	rs2084202	A	G	7408.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.73;DB;DP=104;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=0.634;SOR=0.682;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3772,312,0
chr2	120125053	rs3731608	C	G	2624.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=143;ExcessHet=3.0103;FS=1.412;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=-1.132e+00;SOR=0.561;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:75,68:143:99:0|1:120125053_C_G:2633,0,2948:120125053
chr2	120125058	rs3731607	C	T	2629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.892e+00;DB;DP=148;ExcessHet=3.0103;FS=1.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=-4.230e-01;SOR=0.568;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:79,69:148:99:0|1:120125053_C_G:2638,0,3045:120125053
chr2	120125363	rs3091405	C	A	684.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.653e+00;DB;DP=46;ExcessHet=3.0103;FS=4.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=1.20;SOR=0.771;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:693,0,864
chr2	120125384	rs3091406	G	A	776.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.255e+00;DB;DP=58;ExcessHet=3.0103;FS=3.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.764;SOR=1.303;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:785,0,1018
chr2	120125689	rs8192503	A	T	1034.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=1.15;SOR=0.638;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,35:69:99:1043,0,963
chr2	120125910	rs2276596	C	A	463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045e+00;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=-1.330e-01;SOR=0.744;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,21:56:99:472,0,868
chr2	120125936	rs2244135	T	C	2198.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.413e+00;DB;DP=52;ExcessHet=1.5490;FS=0.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-1.084e+00;SOR=0.903;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1678,156,0
chr2	120125973	rs3091407	G	C	472.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.57;MQRankSum=-7.310e-01;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=1.41;SOR=0.936;VQSLOD=1.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,17:28:99:481,0,257
chr2	120128009	rs59124589	ATT	AT,A	137.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-9.920e-01;SOR=0.693;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,2:4:46:125,59,48,52,0,46
chr2	120128482	rs956309	C	T	637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=51;ExcessHet=3.0103;FS=4.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-1.345e+00;SOR=1.609;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,23:51:99:646,0,725
chr2	120187344	rs11123523	A	G	353.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=0.703;SOR=1.329;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:269,18,0
chr2	120189404	rs4340531	A	G	489.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.81;ReadPosRankSum=0.577;SOR=0.776;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr2	120189433	rs4599130	G	C	749.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330e-01;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.00;ReadPosRankSum=0.196;SOR=0.593;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:457,45,0
chr2	120189720	rs4344946	A	G	411.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=3.611;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr2	120194651	rs3217464	A	AGTGTGC	11156.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.26;DB;DP=179;ExcessHet=1.5490;FS=0.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.83;ReadPosRankSum=-5.110e-01;SOR=0.737;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,179:179:99:8035,541,0
chr2	120195182	rs2278565	C	G	1371.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.46;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.58;ReadPosRankSum=0.00;SOR=0.512;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:963,78,0
chr2	120197670	rs1042656	G	A	1979.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.11;DB;DP=47;ExcessHet=1.5490;FS=0.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=1.65;SOR=0.578;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1374,140,0
chr2	120198927	rs2587663	G	A	453.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.106;SOR=0.631;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:144,0,106
chr2	120199140	rs1126839	A	G	3168.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=77;ExcessHet=1.5490;FS=3.627;MQ=59.96;MQRankSum=0.797;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=-2.240e-01;SOR=0.696;VQSLOD=2.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2249,231,0
chr2	120204617	rs6748349	G	A	113.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.260e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr2	120209689	rs2587692	A	G	7118.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.397e+00;DB;DP=157;ExcessHet=1.5490;FS=2.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=-9.710e-01;SOR=0.531;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4893,470,0
chr2	120219287	.	CA	C	185.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-3.190e-01;SOR=0.892;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:9:39,0,9
chr2	120221481	rs2253872	T	A	506.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=0.00;SOR=2.179;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:254,18,0
chr2	120221585	rs2253870	G	A	2087.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.285e+00;DB;DP=39;ExcessHet=1.5490;FS=2.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=-7.600e-02;SOR=0.399;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1348,117,0
chr2	120221984	rs2579647	A	C	1625.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=25;ExcessHet=1.5490;FS=1.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=-3.700e-01;SOR=0.385;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:929,75,0
chr2	120230901	rs2579640	C	T	1362.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.838e+00;DB;DP=24;ExcessHet=1.5490;FS=4.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=-2.900e-01;SOR=3.109;VQSLOD=18.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:926,72,0
chr2	120230998	rs2579641	G	A	3956.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.019;DB;DP=100;ExcessHet=1.5490;FS=5.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=1.78;SOR=0.327;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3015,297,0
chr2	120231165	rs2587701	T	C	6921.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.498e+00;DB;DP=169;ExcessHet=1.5490;FS=0.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=1.94;SOR=0.635;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,169:169:99:5126,506,0
chr2	120231303	rs2587702	T	C	2616.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.620e-01;DB;DP=68;ExcessHet=1.5490;FS=0.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=-7.660e-01;SOR=0.871;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2141,204,0
chr2	120231432	rs2587703	A	C	293.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=2.833;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:308,24,0
chr2	120231483	rs2587704	C	T	44.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=14.75;SOR=1.179;VQSLOD=12.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:59,9,0
chr2	120282015	rs2244214	C	T	102.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.22;SOR=2.833;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	120303820	rs2579624	A	T	295.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.79;SOR=3.056;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:312,27,0
chr2	120317621	.	CT	C,CTT	1008.04	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.208;DP=59;ExcessHet=3.9794;FS=2.193;MQ=59.85;MQRankSum=0.861;QD=6.50;ReadPosRankSum=-3.500e-01;SOR=0.925;VQSLOD=0.093;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:15,14,19:59:61:356,186,589,61,0,363
chr2	120319829	.	C	CAAA	97.36	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=2.833;VQSLOD=6.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr2	120362407	rs1568540	C	T	9261.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.67;SOR=0.724;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3194,340,0
chr2	120362897	rs1521914	T	A	3402.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=2.373;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:822,78,0
chr2	120366057	rs11398750	G	GT	1733.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.554e+00;DB;DP=19;ExcessHet=3.0103;FS=4.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=0.806;SOR=0.120;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,17:19:3:382,3,0
chr2	120369300	rs10864986	T	C	8160.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.15;SOR=0.707;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2263,237,0
chr2	120372985	rs1521910	C	T	492.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.60;SOR=5.136;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr2	120385094	rs200629080	GATATATAT	G,GAT	2246.72	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.169;DB;DP=10;ExcessHet=3.0103;FS=6.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.10;ReadPosRankSum=-2.340e-01;SOR=4.209;VQSLOD=3.64;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,2,8:10:42:420,281,255,71,0,42
chr2	120387637	rs12711931	G	C	733.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.05;SOR=4.407;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:120387637_G_C:225,15,0:120387637
chr2	120387640	rs2272056	T	C	208.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=3.611;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:120387637_G_C:225,15,0:120387637
chr2	120388412	rs2272058	G	A	10915.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=0.872;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3814,376,0
chr2	120395657	rs939770	A	G	1034.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.22;SOR=6.439;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:430,30,0
chr2	120397694	rs939773	A	G	1336.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.57;SOR=5.610;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:333,27,0
chr2	120404629	rs11349518	AT	A	4309.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.640e-01;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.68;ReadPosRankSum=0.280;SOR=0.924;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,43:47:36:998,36,0
chr2	120409351	rs1521911	C	T	1221.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.938;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.94;ReadPosRankSum=0.00;SOR=3.383;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
chr2	120409430	rs1521912	A	G	3345.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=3.185;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:857,72,0
chr2	120414083	rs6761357	C	T	1405.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=32;ExcessHet=3.9794;FS=3.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=1.46;SOR=0.376;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:350,0,446
chr2	120438523	rs13011768	A	G	20959.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=209;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=0.837;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,209:209:99:6451,627,0
chr2	120438696	rs939777	A	G	26330.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.24;SOR=0.965;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,204:204:99:6815,613,0
chr2	120439230	rs1983406	C	G	13763.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=0.826;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4346,427,0
chr2	120439459	rs4849797	C	A	3233.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=2.706;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:756,60,0
chr2	120443443	rs939778	A	G	3996.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.278;DB;DP=48;ExcessHet=3.0103;FS=6.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.38;ReadPosRankSum=0.795;SOR=0.274;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1663,144,0
chr2	120443665	rs7571822	T	C	311.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=3;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr2	120620092	.	AT	A	108.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.889;DP=59;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=0.48;ReadPosRankSum=-1.293e+00;SOR=0.713;VQSLOD=4.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,10:59:75:75,0,1023
chr2	120635205	rs3768914	G	A	261.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=5;ExcessHet=6.9897;FS=2.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.700;SOR=0.169;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,103
chr2	120643280	rs74866537	G	GT	535.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.65;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=-1.000e-01;SOR=0.646;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:125,0,125
chr2	120677523	rs55744502	C	G	329.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=0.226;SOR=1.112;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,109
chr2	120689905	rs2292361	A	G	1661.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-5.100e-02;SOR=0.517;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:589,0,225
chr2	120703842	rs2289581	A	G	1256.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=11;ExcessHet=3.9794;FS=6.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.087;SOR=2.038;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:180,0,148
chr2	120704164	rs3214717	A	AT	3991.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DB;DP=76;ExcessHet=6.9897;FS=0.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=0.095;SOR=0.781;VQSLOD=7.54;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,35:76:99:0|1:120704164_A_AT:1339,0,2322:120704164
chr2	120704166	rs2289580	G	T	3991.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=77;ExcessHet=6.9897;FS=0.533;MQ=60.00;MQRankSum=0.00;QD=18.83;ReadPosRankSum=-1.910e-01;SOR=0.750;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,35:77:99:0|1:120704164_A_AT:1339,0,2322:120704164
chr2	120714401	.	CT	C	544.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.150e-01;DP=39;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=4.46;ReadPosRankSum=0.592;SOR=0.713;VQSLOD=5.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,8:39:60:60,0,639
chr2	120718322	rs12618050	A	G	916.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=20;ExcessHet=6.9897;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-4.010e-01;SOR=0.394;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:257,0,313
chr2	120718672	rs6737776	T	G	1802.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.49;SOR=6.316;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:704,54,0
chr2	120725704	rs10194955	A	G	1683.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.38;SOR=5.994;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:561,39,0
chr2	120734737	rs3832049	C	CA	673.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=19;ExcessHet=3.9794;FS=1.055;MQ=59.93;MQRankSum=0.00;QD=12.02;ReadPosRankSum=-1.181e+00;SOR=0.869;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:206,0,197
chr2	120776972	rs3216703	TG	T	1698.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=26;ExcessHet=6.9897;FS=13.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=0.651;SOR=3.751;VQSLOD=0.550;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,14:26:99:488,0,407
chr2	120830505	rs11397278	T	TA	123.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.71;ReadPosRankSum=0.992;SOR=0.495;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:54:54,0,107
chr2	120830815	rs3738970	A	G	1141.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.590e-01;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.905;SOR=0.781;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:322,0,403
chr2	120831007	rs3738969	T	C	77.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=2.303;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr2	120832859	rs1713084	G	A	1161.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.76;SOR=3.841;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:277,21,0
chr2	120851010	rs1599893	G	T	1256.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.43;SOR=6.869;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr2	120885310	rs1034489	G	A	3446.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496e+00;DB;DP=79;ExcessHet=6.9897;FS=4.852;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-5.650e-01;SOR=0.979;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,37:79:99:904,0,1119
chr2	120889173	rs3738968	G	C	2241.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=65;ExcessHet=6.9897;FS=3.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.611;SOR=0.507;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,31:65:99:785,0,868
chr2	120900736	rs75582263	T	C	1107.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DB;DP=46;ExcessHet=3.9794;FS=1.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=0.709;SOR=0.543;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:572,0,575
chr2	120918585	rs12617570	A	C	2179.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=1.17;SOR=0.673;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:401,0,435
chr2	120980428	rs11550347	G	C	11686.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.340e-01;DB;DP=321;ExcessHet=6.9897;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=5.000e-03;SOR=0.612;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:171,150:321:99:4179,0,4664
chr2	120997869	rs6746072	A	T	2093.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=37;ExcessHet=3.9794;FS=0.811;MQ=59.67;MQRankSum=0.00;QD=16.36;ReadPosRankSum=-7.600e-02;SOR=0.830;VQSLOD=3.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:444,0,586
chr2	121036385	rs12711939	T	G	4437.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.174;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=0.141;SOR=0.667;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,29:53:99:0|1:121036385_T_G:1145,0,1430:121036385
chr2	121036386	rs12711940	T	A	4437.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.590e-01;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=0.276;SOR=0.675;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,29:53:99:0|1:121036385_T_G:1145,0,1430:121036385
chr2	121038290	rs113531689	GA	G	1245.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DB;DP=21;ExcessHet=3.9794;FS=0.893;MQ=60.00;MQRankSum=0.00;QD=12.71;ReadPosRankSum=1.02;SOR=0.565;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:148,0,264
chr2	121038611	rs13022486	C	T	557.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=0.00;SOR=0.593;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:72:139,0,72
chr2	121043403	rs4091515	G	A	1719.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.187e+00;DB;DP=29;ExcessHet=3.9794;FS=1.797;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=-7.120e-01;SOR=1.483;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:349,0,548
chr2	121050989	rs1065518	T	A	2163.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=32;ExcessHet=3.9794;FS=1.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=-1.872e+00;SOR=1.071;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,22:32:99:663,0,248
chr2	121555027	rs200095340	C	T	916.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=73;ExcessHet=3.0103;FS=1.022;MQ=60.00;MQRankSum=0.00;QD=12.55;ReadPosRankSum=-7.350e-01;SOR=0.483;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,35:73:99:925,0,1034
chr2	121684663	rs6745937	C	G	3671.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.469;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1104,108,0
chr2	121708584	rs11122836	C	T	898.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=6.358;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr2	121708663	rs10864866	A	G	3929.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=28.65;SOR=6.518;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1238,102,0
chr2	121709091	rs11681136	G	A	4104.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.41;SOR=7.112;VQSLOD=23.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1385,105,0
chr2	121713022	rs6718382	C	G	17512.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=2.269;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,160:160:99:1|1:121713022_C_G:6610,481,0:121713022
chr2	121713030	rs12614482	G	A	15664.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=3.218;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,127:127:99:1|1:121713022_C_G:5816,403,0:121713022
chr2	121713041	rs12617878	T	C	11872.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.46;SOR=4.571;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:4240,318,0
chr2	121726447	rs2592595	G	A	31758.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=323;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=1.263;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,323:323:99:9897,967,0
chr2	121727842	rs1867906	G	A	1139.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.86;SOR=5.283;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr2	121728522	rs2677508	T	C	123.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=2.833;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:121728522_T_C:135,9,0:121728522
chr2	121728529	rs2592593	T	C	123.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.12;SOR=2.833;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:121728522_T_C:135,9,0:121728522
chr2	121729323	rs2677507	A	G	3422.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.76;SOR=4.152;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1179,99,0
chr2	121729360	rs2592592	T	C	5954.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.83;SOR=3.286;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2184,180,0
chr2	121729490	rs2592591	C	T	18987.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.38;SOR=0.935;VQSLOD=18.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,234:234:99:6496,692,0
chr2	121729686	rs2592590	T	C	9214.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=1.999;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2942,258,0
chr2	121730138	rs3106962	C	G	6118.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.65;ReadPosRankSum=-1.011e+00;SOR=1.540;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1676,134,0
chr2	121730478	rs280201	G	T	1859.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=7.701;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:445,33,0
chr2	121732355	.	AGTGTGT	A	401.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=0.700;SOR=1.739;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,83
chr2	121740190	rs1968619	C	T	6881.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=4.091;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,55:55:99:1|1:121740190_C_T:2444,166,0:121740190
chr2	121740194	rs1530580	T	G	6913.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.49;SOR=3.683;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,55:55:99:1|1:121740190_C_T:2444,166,0:121740190
chr2	121740505	rs280196	C	T	4642.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=60;ExcessHet=3.0103;FS=1.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-1.540e-01;SOR=0.936;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1658,176,0
chr2	121740609	rs67863160	CTT	C	790.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=-2.070e-01;SOR=0.412;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:99:285,0,112
chr2	121744225	rs2276553	A	G	3438.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=74;ExcessHet=6.9897;FS=10.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-5.110e-01;SOR=0.351;VQSLOD=19.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,39:74:99:1094,0,916
chr2	121746956	rs3738880	G	T	9635.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DB;DP=251;ExcessHet=6.9897;FS=0.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-2.980e-01;SOR=0.773;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,121:251:99:3149,0,3350
chr2	121747406	rs12711538	G	A	10847.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=259;ExcessHet=6.9897;FS=3.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.567;SOR=0.884;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,117:259:99:3249,0,3716
chr2	121747429	rs10167980	A	G	9833.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=251;ExcessHet=6.9897;FS=1.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.671;SOR=0.728;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,114:251:99:2999,0,3436
chr2	121981950	rs11890430	A	G	1918.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490e-01;DB;DP=53;ExcessHet=6.9897;FS=2.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-1.230e+00;SOR=0.906;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:537,0,764
chr2	121982011	rs4384798	T	A	701.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-2.164e+00;SOR=0.765;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:710,0,591
chr2	121989489	rs2304667	G	A	2355.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=187;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-4.410e-01;SOR=0.698;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,95:187:99:2364,0,2169
chr2	121989683	rs200655030	TTTTTGTTTTG	T,TTTTTGTTTTGTTTTGTTTTG	1495.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.112;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;QD=32.50;ReadPosRankSum=0.393;SOR=2.985;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,9,8:17:99:697,332,428,365,0,345
chr2	122004596	rs2252862	C	G	3984.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=52;ExcessHet=3.9794;FS=8.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=-1.110e-01;SOR=0.261;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,29:52:99:787,0,681
chr2	122005928	rs1530124	C	T	1201.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.760e+00;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-1.455e+00;SOR=0.724;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,47:90:99:1210,0,1234
chr2	122006851	rs17006283	A	C	739.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394e+00;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-1.255e+00;SOR=0.698;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,30:57:99:748,0,712
chr2	122007378	rs2119021	A	C	1139.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=28;ExcessHet=3.9794;FS=2.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=0.697;SOR=1.162;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:532,0,329
chr2	122042750	rs13415738	A	T	5100.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=100;ExcessHet=3.9794;FS=5.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=2.39;SOR=0.436;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,61:100:99:1458,0,921
chr2	122176128	.	G	A	1429.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DP=83;ExcessHet=3.0103;FS=3.436;MQ=60.00;MQRankSum=0.00;QD=17.22;ReadPosRankSum=1.83;SOR=1.238;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,50:83:99:1438,0,795
chr2	122516415	rs369878516	T	C	430.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=31;ExcessHet=3.0103;FS=4.041;MQ=60.00;MQRankSum=0.00;QD=13.88;ReadPosRankSum=2.43;SOR=1.863;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:439,0,475
chr2	122520713	.	GT	G	501.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DP=21;ExcessHet=3.9794;FS=7.307;MQ=59.54;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-1.520e-01;SOR=0.108;VQSLOD=5.57;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,9:21:37:188,0,37
chr2	124771343	rs111871114	A	G	140.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-1.415e+00;SOR=1.981;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:149,0,143
chr2	125000164	rs11347347	CG	C	873.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.20;ReadPosRankSum=0.081;SOR=2.833;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr2	125192068	rs1425745	T	C	8482.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.110e+00;DB;DP=93;ExcessHet=3.0103;FS=2.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=-9.750e-01;SOR=0.533;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2911,278,0
chr2	125204192	rs61231472	A	G	1634.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191e+00;DB;DP=30;ExcessHet=6.9897;FS=5.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-8.310e-01;SOR=0.340;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:379,0,483
chr2	125204769	rs78640610	AT	A	843.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.250e-01;DB;DP=20;ExcessHet=3.9794;FS=3.407;MQ=60.00;MQRankSum=0.00;QD=13.60;ReadPosRankSum=0.318;SOR=0.283;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,14:20:99:330,0,103
chr2	125232609	rs4411700	G	T	6430.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.384e+00;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=0.042;SOR=0.777;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2148,186,0
chr2	125262280	rs34518488	AT	A	184.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550e-01;DB;DP=10;ExcessHet=1.5490;FS=3.969;MQ=59.93;MQRankSum=0.00;QD=13.20;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:10:54:74,0,54
chr2	127447763	rs6709803	G	A	2197.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.107e+00;DB;DP=51;ExcessHet=1.5490;FS=7.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=-1.650e-01;SOR=1.656;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1666,152,0
chr2	127453386	rs1530148	C	T	84.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=0.105;SOR=0.223;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:93:93,0,262
chr2	127453479	rs4538146	G	A	356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.250e-01;DB;DP=36;ExcessHet=3.0103;FS=2.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=0.617;SOR=1.480;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,14:36:99:365,0,667
chr2	127453664	rs1050967	A	C	7146.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.935;DB;DP=188;ExcessHet=1.5490;FS=0.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.33;ReadPosRankSum=1.22;SOR=0.640;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,186:188:99:5404,515,0
chr2	127656664	rs61742783	A	G	979.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=102;ExcessHet=3.0103;FS=1.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-1.632e+00;SOR=0.972;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,40:102:99:988,0,1625
chr2	127656857	rs61730218	G	A	1293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.050;SOR=0.680;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,37:94:99:0|1:127656857_G_A:1302,0,1509:127656857
chr2	127656861	rs61730220	C	T	821.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=94;ExcessHet=3.0103;FS=0.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=-1.171e+00;SOR=0.859;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,36:94:99:0|1:127656857_G_A:830,0,3347:127656857
chr2	127657044	rs75723906	C	T	423.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.810e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=1.01;SOR=0.740;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:432,0,741
chr2	127657208	rs75284937	C	T	301.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.113;SOR=0.892;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,10:34:99:310,0,728
chr2	127657221	rs3795873	C	T	3908.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.390e-01;DB;DP=34;ExcessHet=3.0103;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.30;ReadPosRankSum=1.06;SOR=0.924;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,22:34:99:678,0,350
chr2	127658641	rs10928994	T	A	543.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.97;ReadPosRankSum=1.65;SOR=3.258;VQSLOD=18.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:112,0,61
chr2	127659409	rs11675657	G	A	732.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640e-01;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.288;SOR=0.638;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,33:72:99:741,0,941
chr2	127659531	rs11675698	G	A	597.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;DB;DP=53;ExcessHet=3.0103;FS=1.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.358;SOR=0.446;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:606,0,738
chr2	127807941	rs7568161	C	T	1177.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.740e-01;DB;DP=82;ExcessHet=3.0103;FS=3.308;MQ=60.00;MQRankSum=0.00;QD=14.36;ReadPosRankSum=0.409;SOR=0.388;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,44:82:99:1186,0,1086
chr2	127808161	rs7558000	G	A	2332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=1.00;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,62:124:99:0|1:127808161_G_A:2341,0,2361:127808161
chr2	127808170	rs7558001	G	A	2271.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=116;ExcessHet=3.0103;FS=0.717;MQ=60.00;MQRankSum=0.00;QD=19.58;ReadPosRankSum=0.898;SOR=0.825;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,59:116:99:0|1:127808161_G_A:2280,0,2255:127808161
chr2	127808226	rs2071270	A	T	5030.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070e-01;DB;DP=79;ExcessHet=3.9794;FS=2.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.410;SOR=0.910;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,35:79:99:970,0,1230
chr2	127808532	rs2043798	G	A	4435.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DB;DP=84;ExcessHet=3.9794;FS=2.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=0.261;SOR=0.877;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1141,0,1058
chr2	127808909	rs6745677	G	A	7824.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.295;DB;DP=167;ExcessHet=3.9794;FS=0.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.346;SOR=0.732;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,82:167:99:1968,0,2014
chr2	127811712	rs35339559	G	GCA	3119.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=41;ExcessHet=3.9794;FS=1.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=0.966;SOR=0.480;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,24:41:99:956,0,642
chr2	127811774	rs79527490	C	T	119.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.253e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-1.790e-01;SOR=0.330;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:128,0,263
chr2	127814776	rs3754619	G	A	245.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=4.7712;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=-3.280e-01;SOR=2.833;VQSLOD=19.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:108,0,27
chr2	127814835	rs3754617	T	C	956.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.9794;FS=2.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=1.31;SOR=2.101;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:29:160,0,29
chr2	127816424	rs2276582	A	G	647.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=4.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.85;ReadPosRankSum=1.98;SOR=2.419;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	127816632	rs2276579	G	A	6423.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=103;ExcessHet=3.9794;FS=0.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=-7.180e-01;SOR=0.626;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,55:103:99:1376,0,1192
chr2	127816743	rs6720741	G	T	1417.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.369e+00;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=2.44;SOR=0.676;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,65:121:99:1426,0,1317
chr2	127816846	rs140171337	CTG	C	2048.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=19;ExcessHet=3.9794;FS=0.871;MQ=60.00;MQRankSum=0.00;QD=20.29;ReadPosRankSum=0.620;SOR=0.582;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:19:99:317,0,209
chr2	127818406	rs1108031	G	A	261.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.537;SOR=1.302;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:270,0,350
chr2	127821085	rs2071268	C	T	4580.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=76;ExcessHet=3.9794;FS=3.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=-9.380e-01;SOR=0.986;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,39:76:99:950,0,962
chr2	127821452	rs2071267	C	T	12473.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=191;ExcessHet=3.9794;FS=2.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=0.751;SOR=0.495;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,96:191:99:2547,0,2566
chr2	127821499	rs72481904	T	C	16387.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DB;DP=300;ExcessHet=3.9794;FS=1.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=0.371;SOR=0.581;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:162,138:300:99:3482,0,4070
chr2	127826533	rs1060743	A	G	7313.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.574;DB;DP=103;ExcessHet=3.9794;FS=3.274;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=0.873;SOR=0.865;VQSLOD=6.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,37:103:99:968,0,1860
chr2	127826632	rs67327804	A	G	980.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=57;ExcessHet=3.0103;FS=2.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=0.792;SOR=0.404;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,33:57:99:989,0,558
chr2	127834459	rs7562227	T	C	170.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.328;SOR=0.307;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:113,0,119
chr2	127839474	rs11682128	G	A	3473.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.310e-01;DB;DP=105;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=0.148;SOR=0.705;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,55:105:99:1150,0,1213
chr2	127839534	rs11690153	T	C	1885.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.806e+00;DB;DP=48;ExcessHet=6.9897;FS=1.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-2.270e-01;SOR=0.474;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,24:48:99:647,0,689
chr2	127864546	rs11554586	G	A	9406.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=257;ExcessHet=6.9897;FS=1.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.227;SOR=0.833;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,137:257:99:3057,0,2675
chr2	127944781	rs11384285	A	AC	4454.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.910e-01;DB;DP=41;ExcessHet=3.0103;FS=3.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.90;ReadPosRankSum=0.527;SOR=0.408;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1652,123,0
chr2	127950384	rs4997013	A	T	323.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.36;ReadPosRankSum=0.967;SOR=1.022;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	127950443	rs56409904	G	A	411.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=5;ExcessHet=1.5490;FS=5.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=0.825;SOR=3.611;VQSLOD=15.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr2	127950904	rs885276	A	T	2353.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.927e+00;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=1.01;SOR=0.833;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1795,158,0
chr2	127951458	rs2089109	G	A	5543.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.961e+00;DB;DP=82;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.00;ReadPosRankSum=-1.310e-01;SOR=0.711;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,82:82:99:1|1:127951458_G_A:3649,250,0:127951458
chr2	127951459	rs12476709	C	T	5543.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DB;DP=83;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.80;ReadPosRankSum=-6.100e-02;SOR=0.756;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,83:83:99:1|1:127951458_G_A:3649,250,0:127951458
chr2	127952532	rs13001833	A	C	77.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.71;SOR=1.179;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr2	127956812	rs4273176	G	A	299.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=-8.190e-01;SOR=1.609;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr2	127957428	rs59038595	C	A	109.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	128015367	rs4662718	C	T	1620.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=31.17;SOR=1.747;VQSLOD=5.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:45:493,45,0
chr2	128028792	rs4150499	T	C	3035.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.64;SOR=1.739;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:755,66,0
chr2	128044121	rs111463049	CA	C	202.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=17;ExcessHet=3.0103;FS=3.140;MQ=60.00;MQRankSum=0.00;QD=11.90;ReadPosRankSum=1.27;SOR=0.132;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:211,0,132
chr2	128046548	rs4150416	C	A	602.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=0.549;SOR=1.931;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,156
chr2	128050000	rs4150404	A	G	749.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=2.737;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:251,24,0
chr2	128050134	rs4150402	T	C	4512.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=1.699;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1232,120,0
chr2	128066007	rs62157549	A	G	1078.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.72;ReadPosRankSum=-9.350e-01;SOR=2.765;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:225,0,222
chr2	128075624	rs11452548	C	CT	336.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=6.9897;FS=2.442;MQ=59.44;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=1.01;SOR=1.828;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:75:75,0,108
chr2	128075639	.	G	GA	107.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.41;MQRankSum=0.319;QD=4.47;ReadPosRankSum=-4.090e-01;SOR=0.627;VQSLOD=0.350;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:67:67,0,260
chr2	128079483	rs7591595	C	T	244.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=0.524;SOR=1.270;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:187,0,22
chr2	128079527	rs3732210	C	T	491.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-5.530e-01;SOR=0.340;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:245,0,194
chr2	128081682	rs12622436	C	A	859.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DB;DP=24;ExcessHet=3.9794;FS=0.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-6.440e-01;SOR=0.890;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:265,0,369
chr2	128096747	rs72845980	A	C	360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=1.57;SOR=0.208;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:289,0,349
chr2	128175862	rs1799808	C	T	2933.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=125;ExcessHet=3.9794;FS=4.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-3.640e-01;SOR=0.410;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,68:125:99:1763,0,1466
chr2	128175875	rs1799809	G	A	4175.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988e+00;DB;DP=142;ExcessHet=6.9897;FS=1.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.834;SOR=0.780;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,71:142:99:1750,0,1923
chr2	128176040	rs1799810	A	T	7195.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451e+00;DB;DP=189;ExcessHet=6.9897;FS=1.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-5.650e-01;SOR=0.845;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,98:189:99:2543,0,2346
chr2	128176195	rs2854700	G	A	3624.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.10;SOR=6.781;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1488,111,0
chr2	128177377	rs1158867	C	T	2679.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395e+00;DB;DP=64;ExcessHet=6.9897;FS=5.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=1.39;SOR=0.390;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,34:64:99:861,0,789
chr2	128180872	rs5936	G	T	3707.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;DB;DP=66;ExcessHet=1.5490;FS=12.373;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=-1.364e+00;SOR=1.131;VQSLOD=16.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,29:66:99:854,0,1060
chr2	128181028	rs1878844	A	G	13616.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=0.967;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4101,390,0
chr2	128181234	rs2069922	GC	G	4146.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.410e-01;DB;DP=90;ExcessHet=1.5490;FS=3.382;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.30;ReadPosRankSum=-3.600e-01;SOR=1.071;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,48:90:99:1289,0,1097
chr2	128181518	rs971207	T	C	441.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.99;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:116,0,71
chr2	128247640	rs334156	T	C	1864.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=7.658;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr2	128249441	rs334152	C	T	2492.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=5.926;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:597,42,0
chr2	128252234	rs6722447	G	A	758.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.73;SOR=5.994;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr2	128263476	rs334143	C	T	302.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.33;SOR=4.615;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
chr2	128271958	rs10432384	C	T	3694.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.821;DB;DP=77;ExcessHet=1.5490;FS=3.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.84;ReadPosRankSum=-1.815e+00;SOR=1.087;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1031,0,865
chr2	128281469	rs2303947	C	T	1620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.388e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=-1.080e+00;SOR=0.521;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:511,39,0
chr2	128317605	rs59002626	CT	C	233.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=0.842;SOR=3.442;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:79,9,0
chr2	128321770	rs2404991	G	A	8494.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.339;DB;DP=160;ExcessHet=3.9794;FS=1.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=-2.720e-01;SOR=0.855;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,160:160:99:4932,480,0
chr2	128324125	rs11438188	C	CT	1148.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.39;SOR=5.283;VQSLOD=6.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:323,24,0
chr2	128338519	rs35136538	T	G	3546.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=54;ExcessHet=3.9794;FS=0.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.288;SOR=0.781;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1764,121,0
chr2	128338714	rs13407823	A	G	506.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=1.20;SOR=0.560;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
chr2	128338741	rs62156607	T	C	437.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=0.967;SOR=1.022;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:216,18,0
chr2	128339456	rs4662740	G	T	6323.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.787e+00;DB;DP=101;ExcessHet=3.9794;FS=5.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=-2.400e-02;SOR=0.469;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3180,302,0
chr2	128340253	rs10194727	T	C	848.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=6.091;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr2	128341603	rs10928772	T	G	1644.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.85;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=1.20;SOR=0.422;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:954,69,0
chr2	128342547	rs4662741	G	A	6067.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=34.28;SOR=2.571;VQSLOD=4.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1442,111,0
chr2	128345960	rs10928773	T	C	3597.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.220;DB;DP=59;ExcessHet=3.9794;FS=1.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=0.358;SOR=0.846;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1938,177,0
chr2	128346228	rs11673952	A	C	2822.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.67;SOR=5.196;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:816,57,0
chr2	128350578	rs58867441	T	TG	9577.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=3.594;VQSLOD=6.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3419,289,0
chr2	128363530	rs11382004	G	GC	9851.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=3.061;VQSLOD=5.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3061,259,0
chr2	128366636	rs2252610	G	C	1005.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=1.18;SOR=1.819;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:150,0,183
chr2	128367092	rs777432	G	A	10174.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=189;ExcessHet=3.9794;FS=1.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.049;SOR=0.800;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,95:189:99:2324,0,2174
chr2	128369670	.	C	G	286.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968e+00;DP=26;ExcessHet=3.0103;FS=8.302;MQ=60.00;MQRankSum=0.00;QD=11.01;ReadPosRankSum=0.618;SOR=0.064;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:295,0,508
chr2	128369896	rs777435	A	G	7705.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.640e-01;DB;DP=123;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.35;ReadPosRankSum=0.561;SOR=0.708;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,52:123:99:1185,0,1918
chr2	128377833	rs2248519	C	G	3645.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=1.13;SOR=0.680;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,21:51:99:566,0,818
chr2	128379340	rs60935161	A	G	714.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=-1.185e+00;SOR=0.693;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:335,0,367
chr2	128382859	rs2245297	C	T	2491.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=31;ExcessHet=3.9794;FS=4.036;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.80;ReadPosRankSum=-9.290e-01;SOR=1.714;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:429,0,503
chr2	128384744	rs6732660	G	A	8847.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=272;ExcessHet=3.9794;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.736;SOR=0.775;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:124,148:272:99:4056,0,3218
chr2	128389343	rs10208043	C	T	11478.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=153;ExcessHet=3.9794;FS=1.403;MQ=60.00;MQRankSum=0.00;QD=21.95;ReadPosRankSum=1.17;SOR=0.896;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,97:153:99:2463,0,1262
chr2	128389422	rs10183797	G	C	4476.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.906e+00;DB;DP=50;ExcessHet=3.9794;FS=10.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=0.037;SOR=2.558;VQSLOD=16.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,32:50:99:1020,0,537
chr2	128389624	rs10186397	G	A	909.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.57;ReadPosRankSum=0.368;SOR=0.627;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:139,0,120
chr2	128389650	rs13034190	C	T	1212.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.65;ReadPosRankSum=-3.210e-01;SOR=1.981;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:337,0,156
chr2	128390689	rs2009707	A	G	1720.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.136e+00;DB;DP=22;ExcessHet=3.9794;FS=2.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.618;SOR=0.232;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:376,0,241
chr2	128391955	rs116787963	G	A	835.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.759e+00;DB;DP=30;ExcessHet=3.9794;FS=2.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=3.37;SOR=1.236;VQSLOD=21.77;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,12:30:99:336,0,647
chr2	128392468	rs4662749	A	G	628.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=9;ExcessHet=3.9794;FS=1.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=0.703;SOR=0.395;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:94:209,0,94
chr2	128392547	rs4662750	A	C	2052.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.09;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=1.04;SOR=1.445;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:436,0,354
chr2	128392647	rs60245561	G	T	5234.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331e+00;DB;DP=145;ExcessHet=6.9897;FS=4.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.386;SOR=0.987;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,65:145:99:1852,0,2264
chr2	128393261	rs2255178	T	C	3684.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e-01;DB;DP=62;ExcessHet=3.9794;FS=5.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=0.275;SOR=1.238;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:887,0,951
chr2	128393289	rs2255177	T	C	4673.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;DB;DP=94;ExcessHet=3.9794;FS=1.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=-7.910e-01;SOR=0.882;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,48:94:99:1220,0,1157
chr2	128394758	rs2255039	T	C	6358.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479e+00;DB;DP=125;ExcessHet=3.9794;FS=5.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=-7.820e-01;SOR=0.484;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,47:125:99:1225,0,2206
chr2	128394875	rs59579995	C	CA	14843.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=223;ExcessHet=3.9794;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=24.78;ReadPosRankSum=0.180;SOR=0.699;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:134,89:223:99:0|1:128394875_C_CA:3394,0,8217:128394875
chr2	128394877	rs56272236	C	T	14843.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=227;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=24.25;ReadPosRankSum=-1.520e-01;SOR=0.689;VQSLOD=5.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:135,92:227:99:0|1:128394875_C_CA:3394,0,8217:128394875
chr2	128396807	rs891515	A	G	2116.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145e+00;DB;DP=32;ExcessHet=1.5490;FS=3.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.49;ReadPosRankSum=0.228;SOR=1.668;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:508,0,410
chr2	128397418	rs2254680	T	C	715.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=-3.800e-01;SOR=0.479;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:22:22,0,229
chr2	128399414	rs13419955	G	A	432.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.622;SOR=1.501;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:239,0,218
chr2	128399924	rs2244655	T	C	230.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.180e+00;SOR=0.368;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:149,0,189
chr2	128400608	rs4662751	C	T	1227.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.364;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.842;SOR=0.642;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:565,0,950
chr2	128400783	rs2244612	G	A	371.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DB;DP=13;ExcessHet=6.9897;FS=1.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=-1.280e+00;SOR=0.448;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:135,0,222
chr2	128401091	rs2244507	A	G	4347.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=85;ExcessHet=3.9794;FS=0.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=1.02;SOR=0.785;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,33:85:99:818,0,1247
chr2	128401695	rs74340262	T	A	3618.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=116;ExcessHet=3.9794;FS=0.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.652;SOR=0.739;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,56:116:99:1552,0,1697
chr2	128401742	rs6745343	A	G	3679.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=59;ExcessHet=6.9897;FS=0.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-4.640e-01;SOR=0.579;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:921,0,1066
chr2	128401755	rs79149594	C	G	1986.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.795e+00;DB;DP=47;ExcessHet=3.9794;FS=1.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=0.569;SOR=0.497;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:767,0,926
chr2	128408121	rs5834181	G	GC	2608.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.50;SOR=4.277;VQSLOD=6.77;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:51:682,51,0
chr2	128411934	rs6707277	A	G	3973.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.44;DB;DP=48;ExcessHet=3.0103;FS=1.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.18;ReadPosRankSum=2.57;SOR=0.568;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1676,144,0
chr2	128411950	rs6707282	A	G	4580.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.322e+00;DB;DP=67;ExcessHet=3.0103;FS=4.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=-6.410e-01;SOR=0.390;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1938,201,0
chr2	128421829	rs79110686	G	A	1123.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.711;DB;DP=19;ExcessHet=3.9794;FS=1.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=-1.830e-01;SOR=0.297;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:544,57,0
chr2	128526579	rs72147112	T	TTAAA	1432.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.542;DB;DP=3;ExcessHet=3.0103;FS=3.510;MQ=60.00;MQRankSum=0.00;QD=29.44;ReadPosRankSum=0.283;SOR=2.362;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:8:134,8,0
chr2	128615500	rs116376815	A	G	4245.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=0.4576;FS=0.000;MQ=59.97;QD=30.99;SOR=1.789;VQSLOD=3.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4262,411,0
chr2	128699750	rs2304519	G	C	914.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=1.61;SOR=0.627;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:267,0,561
chr2	128699833	rs1370229	C	T	1055.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149e+00;DB;DP=34;ExcessHet=3.9794;FS=0.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.443;SOR=0.527;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:655,0,379
chr2	128708063	rs2461463	T	C	5030.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=31.44;SOR=1.439;VQSLOD=5.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1537,150,0
chr2	128744580	rs2948068	A	G	2241.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=35;ExcessHet=3.9794;FS=10.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.878;SOR=1.643;VQSLOD=18.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1183,104,0
chr2	128744810	rs2461458	A	G	71.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.08;SOR=2.303;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	128746959	rs11674588	T	C	131.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.524;SOR=0.527;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,106
chr2	128747599	rs6430959	C	A	1164.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=1.07;SOR=5.486;VQSLOD=13.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr2	128753854	rs1550174	T	C	6715.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=1.598;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1771,177,0
chr2	128754197	rs11676142	A	G	155.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-5.660e-01;SOR=0.446;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:106,0,63
chr2	128757804	rs10928793	C	T	3262.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.893;DB;DP=51;ExcessHet=3.9794;FS=0.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=-7.450e-01;SOR=0.599;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1734,152,0
chr2	128849114	rs4476299	T	C	9877.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=1.134;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3176,300,0
chr2	128855267	rs10928803	T	C	1060.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=6.518;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:399,27,0
chr2	128860467	rs34378868	A	G	171.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=-1.710e+00;SOR=0.892;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:180,0,127
chr2	128860835	rs7355336	A	G	4925.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.727e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.01;ReadPosRankSum=-1.112e+00;SOR=2.494;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1221,105,0
chr2	128861811	rs10928804	C	T	1085.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.68;SOR=5.211;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:347,27,0
chr2	128865835	rs111449730	T	TAAGA	900.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.08;SOR=4.712;VQSLOD=6.53;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:128865835_T_TAAGA:293,21,0:128865835
chr2	128865858	rs6736472	A	G	505.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=3.442;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:128865835_T_TAAGA:160,12,0:128865835
chr2	128870808	rs4662775	T	C	3351.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=1.586;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1156,111,0
chr2	128872595	rs56397917	C	T	145.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=0.00;SOR=0.330;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,5:18:99:154,0,421
chr2	128874061	rs10210598	G	A	3418.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=3.708;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:840,69,0
chr2	128874168	rs10210702	G	A	601.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=5.549;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr2	128877837	rs4662593	G	C	1780.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.62;SOR=5.421;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:309,24,0
chr2	128878014	rs4662594	G	A	6667.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=0.751;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2050,218,0
chr2	128878667	rs6430990	T	C	1758.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.67;POSITIVE_TRAIN_SITE;QD=33.93;SOR=5.376;VQSLOD=5.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:343,27,0
chr2	128878979	rs10636999	C	CTT	850.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181e+00;DB;DP=22;ExcessHet=3.9794;FS=1.313;MQ=59.58;MQRankSum=-5.140e-01;QD=13.08;ReadPosRankSum=-4.250e-01;SOR=1.032;VQSLOD=0.522;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:22:99:277,0,132
chr2	128879022	rs6430991	G	C	1419.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=58.54;POSITIVE_TRAIN_SITE;QD=31.47;SOR=4.743;VQSLOD=4.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:444,30,0
chr2	128880899	rs4480941	T	A	3385.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=2.115;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1006,100,0
chr2	128880993	rs4633871	A	G	590.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.77;SOR=5.549;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	128890513	rs12692076	T	G	369.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=3.258;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	128890878	rs34066685	T	TG	9239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;DB;DP=93;ExcessHet=3.0103;FS=4.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=-4.000e-03;SOR=0.435;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,45:93:99:1399,0,1517
chr2	128891067	rs11903649	C	T	478.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-7.350e-01;SOR=0.495;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:127,0,198
chr2	128901059	rs4519462	G	A	615.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=1.15;SOR=4.294;VQSLOD=12.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:112,0,29
chr2	128912936	rs13009827	G	A	156.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=0.231;SOR=0.892;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:165,0,142
chr2	128913757	rs3738923	G	A	886.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596e+00;DB;DP=24;ExcessHet=6.9897;FS=1.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.498;SOR=1.091;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:280,0,431
chr2	128914129	.	AT	A	36.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.11;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:33:45,0,33
chr2	128918538	rs6430995	C	T	484.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=0.777;SOR=0.636;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	128934271	.	A	G	592.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100e-02;DP=30;ExcessHet=3.0103;FS=4.054;MQ=60.00;MQRankSum=0.00;QD=19.74;ReadPosRankSum=0.475;SOR=0.230;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,21:30:99:601,0,252
chr2	128934400	rs2290111	T	C	2884.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693e+00;DB;DP=93;ExcessHet=6.9897;FS=4.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-1.302e+00;SOR=0.960;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,44:93:99:1080,0,1355
chr2	128936000	rs2290110	T	C	435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;DB;DP=39;ExcessHet=3.0103;FS=4.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=1.12;SOR=0.467;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:444,0,563
chr2	128936171	rs10542002	TATG	T	432.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=0.907;SOR=0.818;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,11:18:99:441,0,318
chr2	128939598	rs13000972	G	A	467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.439;SOR=0.481;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:476,0,298
chr2	128939695	rs17793615	A	G	1341.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.77;DB;DP=76;ExcessHet=3.0103;FS=2.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=-8.590e-01;SOR=0.991;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1350,0,916
chr2	128939817	rs1699	G	A	1428.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;DB;DP=117;ExcessHet=3.0103;FS=2.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-1.012e+00;SOR=0.972;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,57:117:99:1437,0,1515
chr2	128944424	rs744265	T	C	2592.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.159e+00;DB;DP=74;ExcessHet=6.9897;FS=1.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-2.180e-01;SOR=0.574;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,34:74:99:784,0,1042
chr2	128944576	rs748760	C	A	60.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=1.28;SOR=0.307;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,123
chr2	128947505	rs11542865	G	A	404.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=1.14;SOR=0.848;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:413,0,305
chr2	129276784	rs1814530	C	T	3523.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=122;ExcessHet=1.5490;FS=1.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=-1.610e-01;SOR=0.546;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,50:122:99:1154,0,1729
chr2	129625968	rs1251099	A	G	567.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=5.421;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	130681407	rs7591781	G	C	5569.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=3.489;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1995,159,0
chr2	130681447	rs11897873	G	A	3362.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=6.543;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1184,87,0
chr2	130692065	rs33952844	G	GC	496.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.67;ReadPosRankSum=1.41;SOR=3.442;VQSLOD=3.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:10:115,0,10
chr2	130737541	rs4347768	C	T	2392.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=55.10;MQRankSum=2.75;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=2.28;SOR=3.737;VQSLOD=-1.342e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,18:20:30:651,0,30
chr2	130737578	rs4233601	G	A	3038.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=46.32;MQRankSum=2.41;QD=22.68;ReadPosRankSum=2.53;SOR=0.944;VQSLOD=-4.350e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,31:40:99:923,0,182
chr2	130738163	rs144773989	G	A	23880.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.590e-01;DB;DP=266;ExcessHet=3.0103;FS=0.000;MQ=46.79;MQRankSum=0.220;QD=30.19;ReadPosRankSum=0.323;SOR=0.257;VQSLOD=-3.306e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,266:266:99:7550,791,0
chr2	130750446	rs199529770	C	A	2616.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.220e-01;DB;DP=158;ExcessHet=3.9794;FS=0.862;MQ=41.60;MQRankSum=-2.542e+00;QD=7.86;ReadPosRankSum=0.240;SOR=0.621;VQSLOD=-4.731e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,59:158:99:1282,0,2463
chr2	130807680	rs59562337	A	G	1365.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=13;ExcessHet=3.0103;FS=2.122;MQ=41.58;MQRankSum=-4.969e+00;QD=18.71;ReadPosRankSum=1.40;SOR=1.096;VQSLOD=-4.515e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:411,39,0
chr2	130807780	rs55647081	G	C	575.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.820e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=38.80;MQRankSum=-3.067e+00;QD=23.02;ReadPosRankSum=-5.250e-01;SOR=1.044;VQSLOD=-5.093e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr2	130832531	rs2122977	A	G	8122.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=115;ExcessHet=3.9794;FS=5.242;MQ=53.66;MQRankSum=4.76;NEGATIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.476;SOR=1.007;VQSLOD=-2.371e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3407,345,0
chr2	130832545	rs199777567	C	T	1755.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=129;ExcessHet=3.0103;FS=0.000;MQ=53.64;MQRankSum=-1.910e+00;NEGATIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.942;SOR=0.705;VQSLOD=-3.041e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,71:129:99:1764,0,1295
chr2	130832927	rs201630632	A	G	991.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=43;ExcessHet=6.9897;FS=3.611;MQ=43.53;MQRankSum=-4.912e+00;QD=4.31;ReadPosRankSum=0.941;SOR=0.831;VQSLOD=-4.376e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:525,0,468
chr2	130869609	rs62163064	A	G	932.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.32;DB;DP=4;ExcessHet=3.0103;FS=8.431;MQ=49.74;MQRankSum=-5.303e+00;QD=10.84;ReadPosRankSum=-3.500e-02;SOR=1.758;VQSLOD=-3.691e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr2	130897055	rs28751929	G	A	9271.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.670e+00;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=57.12;MQRankSum=-3.965e+00;NEGATIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=-1.560e-01;SOR=0.684;VQSLOD=-2.247e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3790,342,0
chr2	130897218	rs13006246	T	C	18244.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622e+00;DB;DP=339;ExcessHet=3.9794;FS=0.556;MQ=59.92;MQRankSum=1.10;QD=18.14;ReadPosRankSum=1.11;SOR=0.789;VQSLOD=0.881;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,339:339:99:10136,1017,0
chr2	130941065	rs6737226	T	C	9108.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.742e+00;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=53.71;MQRankSum=-5.024e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=-7.420e-01;SOR=0.724;VQSLOD=-2.146e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,70:135:99:1714,0,1684
chr2	130941441	rs200567237	C	T	3990.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=285;ExcessHet=3.0103;FS=0.431;MQ=59.75;MQRankSum=-3.046e+00;QD=14.00;ReadPosRankSum=-9.800e-02;SOR=0.645;VQSLOD=-1.225e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:135,150:285:99:3999,0,3391
chr2	130948314	rs142246044	G	GT	252.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230e+00;DB;DP=33;ExcessHet=3.0103;FS=7.877;MQ=60.00;MQRankSum=0.00;QD=7.65;ReadPosRankSum=0.670;SOR=0.132;VQSLOD=3.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,15:33:99:261,0,381
chr2	130949411	rs10208844	G	T	12439.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.939e+00;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=54.25;MQRankSum=-7.046e+00;POSITIVE_TRAIN_SITE;QD=28.14;ReadPosRankSum=1.24;SOR=0.636;VQSLOD=-3.460e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:69,94:163:99:2651,0,1807
chr2	130949817	.	C	T	1979.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.227e+00;DP=95;ExcessHet=3.0103;FS=1.162;MQ=58.81;MQRankSum=0.136;NEGATIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=-2.111e+00;SOR=1.061;VQSLOD=-1.217e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,60:95:99:1988,0,1065
chr2	130951548	rs1052319	G	A	21826.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.52;DB;DP=189;ExcessHet=3.0103;FS=4.183;MQ=56.60;MQRankSum=5.45;QD=33.27;ReadPosRankSum=-1.424e+00;SOR=1.235;VQSLOD=-3.558e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,189:189:99:6951,568,0
chr2	130951566	rs7340193	G	A	14876.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=178;ExcessHet=3.9794;FS=2.204;MQ=56.44;MQRankSum=3.05;NEGATIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=-1.022e+00;SOR=0.910;VQSLOD=-2.989e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,90:178:99:2608,0,2391
chr2	130987477	.	G	A	1637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.154e+00;DP=146;ExcessHet=3.0103;FS=0.000;MQ=59.85;MQRankSum=0.947;QD=11.21;ReadPosRankSum=-5.450e-01;SOR=0.722;VQSLOD=0.497;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,68:146:99:1646,0,2163
chr2	130987792	rs12992461	G	A	13795.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=221;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=0.466;SOR=0.664;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,109:221:99:2940,0,2817
chr2	131266530	rs10737928	C	A	22827.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.900e-01;DB;DP=260;ExcessHet=3.0103;FS=3.847;MQ=56.99;MQRankSum=4.91;NEGATIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=-3.009e+00;SOR=0.825;VQSLOD=-4.166e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,260:260:99:8089,776,0
chr2	131334386	.	G	A	255.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.08;DP=22;ExcessHet=3.0103;FS=0.000;MQ=40.00;MQRankSum=0.00;QD=11.60;ReadPosRankSum=1.95;SOR=0.307;VQSLOD=-5.025e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:264,0,463
chr2	131338146	rs375190971	AC	A	1243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DB;DP=66;ExcessHet=6.9897;FS=2.261;MQ=28.16;MQRankSum=-9.660e-01;QD=6.22;ReadPosRankSum=0.563;SOR=0.916;VQSLOD=0.107;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,13:66:99:265,0,1677
chr2	131407692	rs62165268	T	C	616.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=57.49;MQRankSum=1.21;QD=19.28;ReadPosRankSum=0.608;SOR=0.957;VQSLOD=-1.403e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:206,0,130
chr2	131407943	rs201832551	T	G	1741.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;DB;DP=46;ExcessHet=6.9897;FS=2.457;MQ=40.49;MQRankSum=-1.612e+00;QD=13.00;ReadPosRankSum=0.611;SOR=0.964;VQSLOD=-4.733e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,10:46:99:167,0,887
chr2	131414061	rs62165274	A	G	1466.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=48.86;MQRankSum=-4.303e+00;QD=17.46;ReadPosRankSum=-7.440e-01;SOR=0.843;VQSLOD=-3.466e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:369,0,575
chr2	131414073	rs62165275	T	A	1625.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=50.31;MQRankSum=-5.041e+00;QD=17.12;ReadPosRankSum=0.333;SOR=0.901;VQSLOD=-3.617e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:415,0,546
chr2	131414176	rs62165276	C	T	4535.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193e+00;DB;DP=108;ExcessHet=6.9897;FS=1.935;MQ=53.19;MQRankSum=-3.204e+00;NEGATIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-2.970e-01;SOR=0.579;VQSLOD=-3.152e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,63:108:99:1646,0,1189
chr2	131487673	rs272128	A	C	17068.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=195;ExcessHet=3.0103;FS=2.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=-9.910e-01;SOR=0.504;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,84:195:99:2268,0,2952
chr2	131520663	rs1905235	T	C	22472.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=286;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-2.320e-01;SOR=0.646;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,144:286:99:3829,0,3544
chr2	131672271	rs6752724	T	C	856.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=3.258;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:246,18,0
chr2	131672950	rs12464119	A	G	6559.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=157;ExcessHet=6.9897;FS=1.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-8.090e-01;SOR=0.678;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,73:157:99:1891,0,2271
chr2	131673316	rs3739129	C	T	5769.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=146;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.158;SOR=0.680;VQSLOD=6.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,68:146:99:1782,0,2056
chr2	131673702	rs62178867	G	A	3305.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318e+00;DB;DP=86;ExcessHet=6.9897;FS=0.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-5.820e-01;SOR=0.757;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,50:86:99:1349,0,906
chr2	131674285	rs3739127	A	G	3306.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787e+00;DB;DP=92;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-1.282e+00;SOR=0.702;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1277,0,1349
chr2	131688382	rs72861463	G	T	297.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.9794;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=0.566;SOR=0.148;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:22:191,0,22
chr2	131688587	rs6718816	G	A	1377.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=53;ExcessHet=3.9794;FS=4.588;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.521;SOR=1.132;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,26:53:99:694,0,623
chr2	131688783	rs61750360	G	A	2267.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.256;SOR=0.674;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,36:78:99:886,0,1063
chr2	131703968	rs67022442	G	C	393.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-5.100e-01;SOR=0.929;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:284,0,308
chr2	131769237	rs13023338	G	A	4356.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.561;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=-6.480e-01;SOR=0.787;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1725,165,0
chr2	131769591	rs12612379	C	T	707.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.82;SOR=3.500;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr2	131813442	rs10167343	A	G	766.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.01;SOR=4.514;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr2	131985688	.	A	G	451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DP=13;ExcessHet=6.9897;FS=0.000;MQ=43.74;MQRankSum=-2.206e+00;QD=9.62;ReadPosRankSum=0.100;SOR=0.337;VQSLOD=-3.948e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:194,0,192
chr2	131988269	rs4850270	T	C	261.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=48.14;QD=32.68;SOR=4.407;VQSLOD=-1.551e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	131995475	rs199828075	A	G	116.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=40.31;MQRankSum=-3.190e-01;QD=29.08;ReadPosRankSum=1.15;SOR=0.446;VQSLOD=-4.998e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:67:0|1:131995475_A_G:123,0,67:131995475
chr2	131995493	rs200476582	C	T	117.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=40.31;MQRankSum=-3.190e-01;QD=29.31;ReadPosRankSum=1.15;SOR=0.446;VQSLOD=-5.003e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:67:0|1:131995475_A_G:123,0,67:131995475
chr2	132044992	rs4850179	T	C	2359.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=44.04;QD=29.88;SOR=3.056;VQSLOD=-4.043e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:963,78,0
chr2	132045098	rs4850180	C	G	177.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=44.43;QD=30.74;SOR=3.611;VQSLOD=-4.397e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr2	132110463	rs12477219	G	C	2983.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=59.97;QD=34.30;SOR=0.812;VQSLOD=2.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1203,108,0
chr2	132111121	rs11895354	G	A	6374.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=41.22;QD=30.09;SOR=1.139;VQSLOD=-5.191e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,71:71:99:1|1:132111121_G_A:3164,214,0:132111121
chr2	132111123	rs370814343	T	C	6374.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=0.4576;FS=0.000;MQ=41.11;QD=32.31;SOR=1.147;VQSLOD=-5.164e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,70:70:99:1|1:132111121_G_A:3164,214,0:132111121
chr2	132111166	.	G	GCC	4247.96	PASS	AC=2;AF=1.00;AN=2;DP=44;ExcessHet=0.4576;FS=0.000;MQ=39.84;QD=27.67;SOR=1.686;VQSLOD=4.39;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:132111166_G_GCC:2025,144,0:132111166
chr2	132111167	.	G	GCCGCCGCCGC	4157.96	PASS	AC=2;AF=1.00;AN=2;DP=42;ExcessHet=0.4576;FS=0.000;MQ=39.42;QD=30.09;SOR=1.609;VQSLOD=4.50;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:132111166_G_GCC:2026,144,0:132111166
chr2	132121350	rs371054387	G	C	442.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388e+00;DB;DP=47;ExcessHet=1.5490;FS=11.428;MQ=46.45;MQRankSum=0.924;QD=8.05;ReadPosRankSum=0.264;SOR=0.291;VQSLOD=-3.201e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,11:47:99:187,0,1062
chr2	132229794	rs3101999	A	C	440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=38;ExcessHet=3.0103;FS=2.103;MQ=54.67;MQRankSum=-5.273e+00;QD=11.59;ReadPosRankSum=0.121;SOR=0.277;VQSLOD=-3.899e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,14:38:99:449,0,747
chr2	132248584	rs10182785	T	C	23761.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=230;ExcessHet=3.0103;FS=0.000;MQ=58.48;POSITIVE_TRAIN_SITE;QD=33.70;SOR=0.748;VQSLOD=4.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,230:230:99:7607,691,0
chr2	132249372	rs6706952	C	T	5944.64	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=67;ExcessHet=3.0103;FS=4.912;MQ=54.50;MQRankSum=2.92;NEGATIVE_TRAIN_SITE;QD=34.87;ReadPosRankSum=0.678;SOR=3.183;VQSLOD=-2.572e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2591,201,0
chr2	132258259	rs184500548	C	T	2157.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=78;ExcessHet=3.9794;FS=0.716;MQ=44.89;MQRankSum=-6.470e-01;QD=14.67;ReadPosRankSum=-2.500e-02;SOR=0.578;VQSLOD=-3.969e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,33:78:99:835,0,1251
chr2	132259080	rs151103273	A	G	531.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.746e+00;DB;DP=32;ExcessHet=3.0103;FS=7.092;MQ=59.03;MQRankSum=-1.442e+00;NEGATIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.653;SOR=0.090;VQSLOD=-1.549e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,19:32:99:540,0,455
chr2	132273578	rs146064090	C	T	460.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=26;ExcessHet=3.0103;FS=1.770;MQ=55.67;MQRankSum=-8.720e-01;NEGATIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=0.283;SOR=1.329;VQSLOD=-2.067e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:469,0,358
chr2	132275762	rs112075540	G	T	54.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=50.26;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=-2.692e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:63,0,35
chr2	132276289	rs149502800	G	C	809.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=46;ExcessHet=3.0103;FS=1.479;MQ=58.71;MQRankSum=0.170;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=1.03;SOR=1.227;VQSLOD=0.049;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,25:46:99:818,0,599
chr2	132287569	rs140791204	G	A	5700.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=272;ExcessHet=3.9794;FS=1.112;MQ=53.93;MQRankSum=0.711;NEGATIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-4.070e-01;SOR=0.606;VQSLOD=-3.023e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:141,131:272:99:3231,0,3932
chr2	132289517	.	T	A	82.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=21;ExcessHet=6.9897;FS=0.000;MQ=42.40;MQRankSum=-2.290e+00;QD=2.02;ReadPosRankSum=0.00;SOR=0.277;VQSLOD=-4.534e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,3:21:27:27,0,499
chr2	132349413	rs6751827	G	A	13728.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.71;SOR=0.815;VQSLOD=4.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4373,422,0
chr2	132349509	rs12994124	G	T	5114.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.000e-01;DB;DP=119;ExcessHet=1.5490;FS=1.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=0.379;SOR=0.606;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3805,356,0
chr2	132349648	rs13029900	T	G	3895.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.101;DB;DP=84;ExcessHet=1.5490;FS=0.665;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-1.780e-01;SOR=0.814;VQSLOD=6.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2771,252,0
chr2	132354365	rs2136463	G	C	12321.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=55.02;POSITIVE_TRAIN_SITE;QD=33.30;SOR=1.271;VQSLOD=3.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3512,327,0
chr2	132354479	rs6704592	C	A	19065.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=188;ExcessHet=3.0103;FS=0.000;MQ=55.07;MQRankSum=-8.280e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.15;ReadPosRankSum=1.55;SOR=0.145;VQSLOD=-5.919e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,187:188:99:5802,550,0
chr2	132354586	rs6710546	A	G	22806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MQ=48.19;POSITIVE_TRAIN_SITE;QD=39.79;SOR=1.010;VQSLOD=-2.273e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,194:194:99:6378,579,0
chr2	132354807	rs6705059	C	T	14254.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=59.36;QD=33.31;SOR=2.428;VQSLOD=3.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4476,423,0
chr2	132354853	rs6705083	C	G	7504.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=59.30;POSITIVE_TRAIN_SITE;QD=28.47;SOR=3.778;VQSLOD=4.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2449,210,0
chr2	132357474	rs1848717	C	T	2640.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=49.77;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.61;SOR=2.211;VQSLOD=1.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:837,69,0
chr2	132357667	rs4107587	A	G	3498.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=47.01;POSITIVE_TRAIN_SITE;QD=32.70;SOR=1.841;VQSLOD=-1.257e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:754,71,0
chr2	132357850	rs6430893	T	C	292.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=57.78;POSITIVE_TRAIN_SITE;QD=27.07;SOR=4.174;VQSLOD=4.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	132361453	rs6720928	T	C	739.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=5.784;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:132361453_T_C:360,24,0:132361453
chr2	132361463	rs138530833	C	T	90.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.29;ReadPosRankSum=1.61;SOR=0.368;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:99,0,174
chr2	132361473	rs10496684	C	T	610.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=1.28;SOR=1.931;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:132361453_T_C:360,24,0:132361453
chr2	132361518	rs6757779	G	A	2361.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.46;POSITIVE_TRAIN_SITE;QD=36.60;SOR=5.670;VQSLOD=4.23;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:132361518_G_A:754,51,0:132361518
chr2	132361543	rs6717542	A	G	3509.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.67;POSITIVE_TRAIN_SITE;QD=30.71;SOR=2.679;VQSLOD=2.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:132361518_G_A:1245,93,0:132361518
chr2	132361854	rs10153598	G	A	508.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=34.52;SOR=2.833;VQSLOD=5.30;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr2	132384339	rs13011244	C	T	16754.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.788e+00;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.97;ReadPosRankSum=-3.840e-01;SOR=0.228;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5316,529,0
chr2	132384381	rs12991373	G	A	8853.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.103;DB;DP=157;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=-1.037e+00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=1.23;SOR=0.705;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4974,469,0
chr2	132384588	rs13011674	C	G	8536.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.857e+00;DB;DP=157;ExcessHet=3.9794;FS=0.533;MQ=59.96;MQRankSum=0.848;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=-7.640e-01;SOR=0.619;VQSLOD=1.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4894,470,0
chr2	132384682	rs12692060	T	C	18293.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=55.25;POSITIVE_TRAIN_SITE;QD=28.07;SOR=0.868;VQSLOD=2.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,121:121:99:1|1:132384682_T_C:5467,370,0:132384682
chr2	132384683	rs12692061	T	G	18293.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=55.02;POSITIVE_TRAIN_SITE;QD=27.92;SOR=0.842;VQSLOD=2.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,121:121:99:1|1:132384682_T_C:5467,370,0:132384682
chr2	132481803	rs112218972	G	C	431.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640e-01;DB;DP=19;ExcessHet=3.9794;FS=1.906;MQ=60.00;MQRankSum=0.00;QD=17.25;ReadPosRankSum=-1.204e+00;SOR=0.451;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:84:318,0,84
chr2	132517068	rs4850122	A	G	1032.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DB;DP=15;ExcessHet=3.9794;FS=2.399;MQ=58.20;MQRankSum=-1.273e+00;QD=19.86;ReadPosRankSum=1.60;SOR=0.428;VQSLOD=-1.301e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,5:15:95:0|1:132517068_A_G:95,0,327:132517068
chr2	132517289	rs78355335	C	A	288.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863e+00;DB;DP=23;ExcessHet=6.9897;FS=0.923;MQ=56.39;MQRankSum=-5.050e+00;QD=3.18;ReadPosRankSum=1.05;SOR=0.841;VQSLOD=-4.652e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,4:23:27:27,0,834
chr2	132517294	rs10184807	A	G	3041.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e-01;DB;DP=24;ExcessHet=3.0103;FS=5.268;MQ=56.74;MQRankSum=-1.608e+00;NEGATIVE_TRAIN_SITE;QD=32.36;ReadPosRankSum=0.537;SOR=0.210;VQSLOD=-1.589e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:478,0,226
chr2	132517322	rs377138777	G	T	409.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.590e-01;DB;DP=20;ExcessHet=6.9897;FS=8.050;MQ=57.75;MQRankSum=-4.745e+00;NEGATIVE_TRAIN_SITE;QD=5.06;ReadPosRankSum=-3.050e-01;SOR=1.812;VQSLOD=-3.231e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,4:20:99:0|1:132517322_G_T:117,0,809:132517322
chr2	132517324	rs75443423	G	C	409.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=20;ExcessHet=6.9897;FS=6.141;MQ=57.85;MQRankSum=-4.745e+00;NEGATIVE_TRAIN_SITE;QD=5.19;ReadPosRankSum=-4.270e-01;SOR=1.619;VQSLOD=-3.032e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,4:20:99:0|1:132517322_G_T:117,0,809:132517322
chr2	132558335	rs12992187	G	T	4223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710e+00;DB;DP=127;ExcessHet=3.9794;FS=2.157;MQ=59.25;MQRankSum=0.088;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=1.16;SOR=0.943;VQSLOD=0.412;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:61,66:127:99:2023,0,1822
chr2	132592178	rs9751367	T	C	11971.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.702;DB;DP=201;ExcessHet=1.5490;FS=0.654;MQ=56.85;MQRankSum=-6.546e+00;QD=25.69;ReadPosRankSum=1.44;SOR=0.595;VQSLOD=-4.218e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:97,104:201:99:2790,0,2540
chr2	132592361	rs142486391	G	T	812.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=75;ExcessHet=3.0103;FS=2.017;MQ=58.46;MQRankSum=0.996;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.087;SOR=0.951;VQSLOD=-2.626e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,29:75:99:821,0,1258
chr2	132592403	rs9711401	T	C	5483.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.149e+00;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=58.13;MQRankSum=-2.971e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=-8.990e-01;SOR=0.682;VQSLOD=0.011;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1763,171,0
chr2	132592459	rs56168567	G	A	1112.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=32;ExcessHet=3.9794;FS=6.690;MQ=56.32;MQRankSum=0.610;NEGATIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.017;SOR=0.185;VQSLOD=-1.277e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,21:32:99:538,0,283
chr2	132592477	rs55947559	AGGTGCTGTGT	A	1144.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=55.57;MQRankSum=-2.050e-01;QD=22.88;ReadPosRankSum=-6.700e-02;SOR=0.706;VQSLOD=1.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,13:22:99:519,0,318
chr2	132593445	rs13417272	G	A	3274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=107;ExcessHet=3.9794;FS=1.622;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=1.43;SOR=0.585;VQSLOD=6.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,57:107:99:1530,0,1288
chr2	132593519	rs9751462	A	G	5531.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DB;DP=91;ExcessHet=1.5490;FS=5.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=-7.470e-01;SOR=0.553;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,55:91:99:1528,0,911
chr2	132593636	rs59199382	C	T	5469.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.400e-02;DB;DP=102;ExcessHet=1.5490;FS=4.862;MQ=59.49;MQRankSum=-2.647e+00;NEGATIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=-4.240e-01;SOR=0.420;VQSLOD=-1.667e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,56:102:99:1395,0,1097
chr2	132594079	rs9798100	C	A	4667.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=60;ExcessHet=3.0103;FS=7.199;MQ=59.00;MQRankSum=-3.330e-01;NEGATIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=0.213;SOR=0.231;VQSLOD=-1.505e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1732,134,0
chr2	132594212	rs12471911	A	T	494.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=51.29;MQRankSum=0.108;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.93;ReadPosRankSum=0.652;SOR=2.584;VQSLOD=-7.225e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:148,0,99
chr2	132905579	rs202079970	G	T	408.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=43.79;MQRankSum=0.769;QD=20.43;ReadPosRankSum=0.105;SOR=0.693;VQSLOD=-4.470e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,7:10:99:0|1:132905579_G_T:327,0,102:132905579
chr2	132905601	rs199926148	T	C	450.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=46.06;MQRankSum=1.31;QD=18.02;ReadPosRankSum=0.056;SOR=0.622;VQSLOD=-4.070e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,9:15:99:0|1:132905579_G_T:357,0,287:132905579
chr2	132905626	rs200465566	A	G	400.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=51.42;MQRankSum=-4.500e-02;NEGATIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=1.84;SOR=1.179;VQSLOD=-2.910e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,8:18:99:0|1:132905579_G_T:299,0,404:132905579
chr2	132905664	rs201427646	G	T	1324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.680e-01;DB;DP=38;ExcessHet=6.9897;FS=1.876;MQ=53.05;MQRankSum=-1.407e+00;NEGATIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-9.450e-01;SOR=0.486;VQSLOD=-2.887e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,20:38:99:0|1:132905664_G_T:828,0,816:132905664
chr2	132905682	rs199535616	T	C	1815.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e-01;DB;DP=51;ExcessHet=6.9897;FS=6.247;MQ=52.60;MQRankSum=-2.647e+00;NEGATIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-1.660e-01;SOR=0.318;VQSLOD=-1.566e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,27:51:99:0|1:132905664_G_T:1103,0,1047:132905664
chr2	132905693	rs150889759	T	C	2084.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910e-01;DB;DP=60;ExcessHet=6.9897;FS=6.447;MQ=52.62;MQRankSum=-4.018e+00;NEGATIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-4.220e-01;SOR=0.343;VQSLOD=-1.873e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,32:60:99:0|1:132905664_G_T:1256,0,1245:132905664
chr2	132905703	rs144342094	C	G	2086.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680e-01;DB;DP=64;ExcessHet=6.9897;FS=11.769;MQ=53.23;MQRankSum=-5.347e+00;QD=12.65;ReadPosRankSum=1.04;SOR=0.316;VQSLOD=-3.010e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,33:64:99:0|1:132905664_G_T:1289,0,1360:132905664
chr2	132905706	rs142209162	A	G	2089.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DB;DP=65;ExcessHet=6.9897;FS=14.892;MQ=53.29;MQRankSum=-5.477e+00;QD=12.37;ReadPosRankSum=1.33;SOR=0.351;VQSLOD=-3.609e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,33:65:99:0|1:132905664_G_T:1289,0,1360:132905664
chr2	132905741	rs111770980	G	A	1255.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=72;ExcessHet=6.9897;FS=15.589;MQ=54.76;MQRankSum=-6.598e+00;QD=6.31;ReadPosRankSum=1.63;SOR=0.918;VQSLOD=-4.800e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,28:72:99:594,0,1007
chr2	132905792	rs189049364	G	C	1271.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=61;ExcessHet=6.9897;FS=5.026;MQ=55.66;MQRankSum=-6.788e+00;QD=6.62;ReadPosRankSum=-1.594e+00;SOR=1.088;VQSLOD=-3.840e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,23:61:99:0|1:132905792_G_C:680,0,4196:132905792
chr2	132905814	rs28482039	G	C	778.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=50;ExcessHet=6.9897;FS=8.345;MQ=55.74;MQRankSum=-6.440e+00;QD=4.61;ReadPosRankSum=-1.554e+00;SOR=1.524;VQSLOD=-3.990e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,13:50:99:0|1:132905792_G_C:431,0,4145:132905792
chr2	132905819	.	T	A	749.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DP=47;ExcessHet=6.9897;FS=8.775;MQ=55.86;MQRankSum=-6.306e+00;QD=4.55;ReadPosRankSum=-2.023e+00;SOR=1.631;VQSLOD=-4.117e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,12:47:99:0|1:132905792_G_C:399,0,3964:132905792
chr2	133014382	rs79129049	A	G	116.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.480e-01;DB;DP=28;ExcessHet=3.9794;FS=2.278;MQ=60.00;MQRankSum=0.00;QD=2.01;ReadPosRankSum=0.916;SOR=0.155;VQSLOD=20.88;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,3:28:44:44,0,1070
chr2	133014413	.	A	G	45.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419e+00;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.08;ReadPosRankSum=0.150;SOR=0.941;VQSLOD=20.48;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,4:42:54:0|1:133014413_A_G:54,0,1554:133014413
chr2	133014423	rs72869458	G	C	512.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.230e-01;DB;DP=47;ExcessHet=6.9897;FS=5.987;MQ=60.00;MQRankSum=0.00;QD=3.54;ReadPosRankSum=-8.060e-01;SOR=0.158;VQSLOD=20.96;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,10:47:99:0|1:133014423_G_C:341,0,1604:133014423
chr2	133014425	.	G	A	152.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DP=50;ExcessHet=3.0103;FS=5.090;MQ=60.00;MQRankSum=0.00;QD=3.05;ReadPosRankSum=-6.570e-01;SOR=0.127;VQSLOD=21.27;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,7:50:99:0|1:133014413_A_G:161,0,1826:133014413
chr2	133014431	rs72869460	C	T	1687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.125e+00;DB;DP=52;ExcessHet=6.9897;FS=7.470;MQ=60.00;MQRankSum=0.00;QD=10.62;ReadPosRankSum=0.103;SOR=0.195;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,14:52:99:355,0,1534
chr2	133014432	rs112385657	C	T	54.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.952;DB;DP=54;ExcessHet=3.9794;FS=4.367;MQ=60.00;MQRankSum=0.00;QD=0.53;ReadPosRankSum=-5.780e-01;SOR=0.171;VQSLOD=21.07;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,4:54:5:0|1:133014432_C_T:5,0,2255:133014432
chr2	133014433	.	G	A	266.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DP=57;ExcessHet=3.0103;FS=1.868;MQ=60.00;MQRankSum=0.00;QD=4.67;ReadPosRankSum=-1.207e+00;SOR=0.295;VQSLOD=20.90;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,10:57:99:0|1:133014413_A_G:275,0,1985:133014413
chr2	133014458	rs80282602	A	G	650.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610e+00;DB;DP=66;ExcessHet=3.9794;FS=9.806;MQ=60.00;MQRankSum=0.00;QD=4.85;ReadPosRankSum=0.298;SOR=0.102;VQSLOD=18.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,15:66:99:0|1:133014423_G_C:560,0,2090:133014423
chr2	133014463	.	G	A	344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.889e+00;DP=73;ExcessHet=3.0103;FS=1.771;MQ=60.00;MQRankSum=0.00;QD=4.72;ReadPosRankSum=0.447;SOR=0.317;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,12:73:99:0|1:133014413_A_G:353,0,2648:133014413
chr2	133014466	.	G	C	380.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.182e+00;DP=78;ExcessHet=3.0103;FS=3.866;MQ=60.00;MQRankSum=0.00;QD=4.88;ReadPosRankSum=0.241;SOR=0.209;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,13:78:99:0|1:133014413_A_G:389,0,2729:133014413
chr2	133014467	.	G	T	377.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.471e+00;DP=78;ExcessHet=3.0103;FS=3.866;MQ=60.00;MQRankSum=0.00;QD=4.84;ReadPosRankSum=0.241;SOR=0.209;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,13:78:99:0|1:133014413_A_G:386,0,2771:133014413
chr2	133014476	rs62165008	A	G	3820.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.417e+00;DB;DP=94;ExcessHet=6.9897;FS=0.759;MQ=59.99;MQRankSum=0.00;QD=13.89;ReadPosRankSum=-9.200e-02;SOR=0.554;VQSLOD=4.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,29:94:99:1014,0,2543
chr2	133014491	.	C	T	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.74;ReadPosRankSum=2.22;SOR=0.699;VQSLOD=20.20;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:110,16:126:99:0|1:133014413_A_G:354,0,4896:133014413
chr2	133014497	.	G	C	6307.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.580e+00;DP=148;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=14.53;ReadPosRankSum=-2.150e-01;SOR=0.715;VQSLOD=4.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:93,55:148:99:0|1:133014497_G_C:2125,0,3811:133014497
chr2	133014504	rs79813268	G	T	6395.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.578e+00;DB;DP=167;ExcessHet=6.9897;FS=0.647;MQ=59.93;MQRankSum=-1.128e+00;QD=13.49;ReadPosRankSum=-1.590e-01;SOR=0.795;VQSLOD=0.582;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:104,63:167:99:0|1:133014497_G_C:2241,0,4184:133014497
chr2	133014510	rs9287404	T	C	8502.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.487e+00;DB;DP=177;ExcessHet=6.9897;FS=0.621;MQ=59.94;MQRankSum=-1.080e+00;QD=16.61;ReadPosRankSum=-3.240e-01;SOR=0.777;VQSLOD=0.699;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:83,94:177:99:3632,0,3006
chr2	133014602	rs75245503	G	C	18472.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494e+00;DB;DP=351;ExcessHet=6.9897;FS=2.542;MQ=59.94;MQRankSum=-1.596e+00;QD=16.32;ReadPosRankSum=1.97;SOR=0.917;VQSLOD=-2.469e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:192,159:351:99:0|1:133014602_G_C:6106,0,7384:133014602
chr2	133014612	rs74853538	A	C	18800.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.41;DB;DP=357;ExcessHet=6.9897;FS=3.292;MQ=59.94;MQRankSum=-1.612e+00;QD=16.33;ReadPosRankSum=1.14;SOR=0.941;VQSLOD=0.130;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:197,160:357:99:0|1:133014602_G_C:6243,0,7548:133014602
chr2	133014640	rs78867621	C	T	3171.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.30;DB;DP=379;ExcessHet=6.9897;FS=18.309;MQ=59.94;MQRankSum=-1.441e+00;NEGATIVE_TRAIN_SITE;QD=2.63;ReadPosRankSum=-1.591e+00;SOR=2.533;VQSLOD=-4.064e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:338,41:379:99:725,0,14392
chr2	133014657	rs113237573	G	A	4175.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=364;ExcessHet=6.9897;FS=17.035;MQ=59.99;MQRankSum=-2.173e+00;NEGATIVE_TRAIN_SITE;QD=3.55;ReadPosRankSum=-1.768e+00;SOR=1.893;VQSLOD=-3.611e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:313,51:364:99:992,0,13154
chr2	133014678	rs72869462	A	G	17363.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DB;DP=349;ExcessHet=6.9897;FS=4.984;MQ=60.00;MQRankSum=0.00;QD=15.93;ReadPosRankSum=-2.641e+00;SOR=0.578;VQSLOD=20.95;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:201,148:349:99:0|1:133014678_A_G:5165,0,7519:133014678
chr2	133014703	rs72869464	T	C	17532.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=307;ExcessHet=6.9897;FS=1.767;MQ=60.00;MQRankSum=0.00;QD=17.84;ReadPosRankSum=-1.940e-01;SOR=0.554;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:169,138:307:99:0|1:133014678_A_G:5516,0,6751:133014678
chr2	133014721	rs72869465	T	C	16684.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.70;DB;DP=292;ExcessHet=6.9897;FS=1.775;MQ=60.00;MQRankSum=0.00;QD=18.06;ReadPosRankSum=1.28;SOR=0.569;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:152,140:292:99:0|1:133014678_A_G:5253,0,5756:133014678
chr2	133014751	rs75204936	T	C	4732.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=253;ExcessHet=6.9897;FS=1.486;MQ=60.00;MQRankSum=0.00;QD=6.17;ReadPosRankSum=-2.030e-01;SOR=0.875;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:206,47:253:99:0|1:133014751_T_C:1295,0,7881:133014751
chr2	133014776	rs72869466	C	T	4910.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.904e+00;DB;DP=219;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.38;ReadPosRankSum=0.966;SOR=0.665;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:171,48:219:99:0|1:133014751_T_C:1530,0,7151:133014751
chr2	133014777	rs72869467	A	G	4919.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440e-01;DB;DP=218;ExcessHet=6.9897;FS=0.726;MQ=60.00;MQRankSum=0.00;QD=7.49;ReadPosRankSum=1.27;SOR=0.604;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:171,47:218:99:0|1:133014751_T_C:1536,0,7091:133014751
chr2	133014786	rs72869468	G	A	7587.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.444e+00;DB;DP=205;ExcessHet=6.9897;FS=8.904;MQ=60.00;MQRankSum=0.00;QD=12.56;ReadPosRankSum=-4.500e-02;SOR=0.297;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:128,77:205:99:0|1:133014786_G_A:2604,0,5011:133014786
chr2	133014805	rs72869469	C	T	6879.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=172;ExcessHet=6.9897;FS=4.345;MQ=60.00;MQRankSum=0.00;QD=13.90;ReadPosRankSum=-6.100e-01;SOR=0.386;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:108,64:172:99:0|1:133014786_G_A:2347,0,4525:133014786
chr2	133014822	rs75678647	C	T	5847.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.79;DB;DP=149;ExcessHet=6.9897;FS=2.365;MQ=60.00;MQRankSum=0.00;QD=13.60;ReadPosRankSum=-7.460e-01;SOR=0.483;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:90,59:149:99:0|1:133014786_G_A:2219,0,3724:133014786
chr2	133014827	rs138609152	C	CA	3878.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.110;DB;DP=141;ExcessHet=6.9897;FS=2.543;MQ=60.00;MQRankSum=0.00;QD=9.58;ReadPosRankSum=0.030;SOR=0.462;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:102,39:141:99:0|1:133014827_C_CA:1282,0,4282:133014827
chr2	133014832	rs76727711	C	T	5520.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.358e+00;DB;DP=140;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.73;ReadPosRankSum=-7.830e-01;SOR=0.664;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:83,57:140:99:0|1:133014786_G_A:2100,0,3314:133014786
chr2	133014841	rs76832220	G	A	3775.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.786e+00;DB;DP=132;ExcessHet=6.9897;FS=3.997;MQ=60.00;MQRankSum=0.00;QD=9.86;ReadPosRankSum=0.611;SOR=0.472;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:97,35:132:99:0|1:133014827_C_CA:1223,0,4078:133014827
chr2	133014847	rs56200609	A	G	10716.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=130;ExcessHet=6.9897;FS=3.425;MQ=60.00;MQRankSum=0.00;QD=29.77;ReadPosRankSum=0.608;SOR=0.474;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,113:130:99:4518,0,183
chr2	133014856	rs79113146	G	T	3040.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e-01;DB;DP=115;ExcessHet=6.9897;FS=1.977;MQ=60.00;MQRankSum=0.00;QD=9.84;ReadPosRankSum=0.615;SOR=0.522;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:85,30:115:99:0|1:133014827_C_CA:981,0,3521:133014827
chr2	133074683	rs7355726	T	C	2572.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.284e+00;DB;DP=45;ExcessHet=6.9897;FS=16.415;MQ=58.35;MQRankSum=-2.810e+00;NEGATIVE_TRAIN_SITE;QD=17.50;ReadPosRankSum=0.317;SOR=0.154;VQSLOD=-2.339e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,28:45:99:793,0,354
chr2	133074718	rs4953961	A	C	4476.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DB;DP=54;ExcessHet=6.9897;FS=10.791;MQ=57.38;MQRankSum=-4.277e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=-4.550e-01;SOR=0.276;VQSLOD=-1.443e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,34:54:99:0|1:133074718_A_C:1357,0,851:133074718
chr2	133074727	rs74763985	T	G	4516.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=55;ExcessHet=6.9897;FS=13.466;MQ=57.18;MQRankSum=-4.342e+00;NEGATIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=-1.259e+00;SOR=0.247;VQSLOD=-2.176e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,35:55:99:0|1:133074718_A_C:1394,0,848:133074718
chr2	133074745	rs7355686	A	T	3226.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270e-01;DB;DP=58;ExcessHet=6.9897;FS=14.947;MQ=57.42;MQRankSum=-4.606e+00;NEGATIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-6.710e-01;SOR=0.250;VQSLOD=-2.651e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,35:58:99:893,0,549
chr2	133074759	rs62169564	A	C	3446.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=65;ExcessHet=6.9897;FS=7.558;MQ=57.61;MQRankSum=-4.990e+00;NEGATIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=0.364;SOR=0.382;VQSLOD=-2.219e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,36:65:99:925,0,763
chr2	133074851	rs7355688	A	T	4151.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=69;ExcessHet=6.9897;FS=2.077;MQ=58.72;MQRankSum=-3.438e+00;QD=15.73;ReadPosRankSum=-5.470e-01;SOR=0.560;VQSLOD=-1.265e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,27:69:99:773,0,1099
chr2	133074876	rs7355689	A	G	3316.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.006e+00;DB;DP=77;ExcessHet=6.9897;FS=0.940;MQ=59.58;MQRankSum=-1.808e+00;QD=12.11;ReadPosRankSum=0.201;SOR=0.778;VQSLOD=-9.085e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:69,8:77:47:47,0,2047
chr2	133075027	rs7349198	G	A	5826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306e+00;DB;DP=135;ExcessHet=6.9897;FS=1.743;MQ=59.91;MQRankSum=0.00;QD=12.67;ReadPosRankSum=-6.750e-01;SOR=0.555;VQSLOD=4.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,64:135:99:1492,0,1917
chr2	133075104	rs7349364	C	T	5546.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=131;ExcessHet=6.9897;FS=1.744;MQ=59.91;MQRankSum=-1.027e+00;QD=12.87;ReadPosRankSum=0.752;SOR=0.542;VQSLOD=0.439;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:68,63:131:99:1530,0,1657
chr2	133174764	rs2241764	C	T	11236.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150e+00;DB;DP=178;ExcessHet=3.9794;FS=0.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=2.89;SOR=0.615;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,78:178:99:2124,0,2876
chr2	133174999	rs2241763	A	G	21074.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=389;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=0.744;SOR=0.662;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:205,184:389:99:4695,0,5326
chr2	133175524	rs34879126	G	A	1467.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900e-02;DB;DP=70;ExcessHet=3.9794;FS=1.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=0.252;SOR=0.578;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,29:70:99:696,0,1096
chr2	133402607	rs1131671	C	T	6635.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.520e-01;DB;DP=99;ExcessHet=3.9794;FS=1.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=-2.620e-01;SOR=0.586;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3264,296,0
chr2	133403433	rs10179785	G	A	735.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e-01;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=0.319;SOR=0.693;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:573,48,0
chr2	133404223	rs2001202	C	A	134.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr2	133554288	rs1868076	A	G	1174.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=1.18;SOR=0.627;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:494,0,611
chr2	133618363	rs1447547	T	C	388.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=4.977;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
chr2	133626706	rs17326258	T	C	644.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=-5.940e-01;SOR=0.749;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:219,0,257
chr2	133636186	rs376071819	TACAC	T	1312.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.605;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.80;ReadPosRankSum=1.04;SOR=2.948;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:490,33,0
chr2	133683658	rs2577634	G	T	1759.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307e+00;DB;DP=47;ExcessHet=6.9897;FS=1.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.340;SOR=0.584;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:428,0,644
chr2	133721547	rs55724759	G	A	563.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=0.207;SOR=0.638;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:318,0,398
chr2	134060575	rs77602516	T	C	528.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.220e-01;DB;DP=60;ExcessHet=3.0103;FS=1.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=-1.834e+00;SOR=0.856;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,24:60:99:537,0,955
chr2	135076046	rs4954132	T	G	568.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-9.670e-01;SOR=4.047;VQSLOD=14.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr2	135076090	rs4954133	C	T	1042.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.59;DB;DP=12;ExcessHet=3.0103;FS=6.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.64;ReadPosRankSum=0.411;SOR=3.841;VQSLOD=14.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:453,36,0
chr2	135076111	rs4954134	C	G	1185.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=15;ExcessHet=3.0103;FS=10.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=1.32;SOR=4.047;VQSLOD=12.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:608,45,0
chr2	135096097	rs7598410	T	C	1718.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=-1.234e+00;SOR=1.085;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:275,24,0
chr2	135119546	rs150980004	A	G	69.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=0.431;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:135119546_A_G:78,0,149:135119546
chr2	135119548	rs2290050	T	A	69.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:135119546_A_G:78,0,149:135119546
chr2	135120034	rs11883785	A	C	289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=31;ExcessHet=3.0103;FS=6.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=-8.300e-02;SOR=2.165;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:298,0,514
chr2	135160755	rs3748900	G	A	3220.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.806;DB;DP=72;ExcessHet=1.5490;FS=1.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=-4.150e-01;SOR=0.665;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2169,215,0
chr2	135214034	rs3214699	T	TA	106.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.76;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:99:0|1:135214034_T_TA:114,0,254:135214034
chr2	135214042	rs2289469	G	A	106.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-1.006e+00;SOR=0.495;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:135214034_T_TA:114,0,254:135214034
chr2	135214259	rs2289470	G	A	2252.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=79;ExcessHet=3.9794;FS=1.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.308;SOR=0.562;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,36:79:99:895,0,1142
chr2	135214418	rs56024138	AT	A	1688.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.07;ReadPosRankSum=0.877;SOR=0.717;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,32:58:99:742,0,563
chr2	135215941	rs547177	G	A	774.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.819;SOR=0.553;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:228,0,113
chr2	135308431	rs59357769	A	G	541.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109e+00;DB;DP=16;ExcessHet=3.9794;FS=4.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-3.680e-01;SOR=0.117;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:216,0,251
chr2	135602601	rs6430545	T	A	2988.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=44;ExcessHet=3.0103;FS=1.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=-1.708e+00;SOR=1.107;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1571,132,0
chr2	135616621	rs1446523	G	A	305.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	135616635	rs12053395	C	G	445.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.81;ReadPosRankSum=0.524;SOR=2.303;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	135628406	rs79401460	C	T	315.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=1.29;SOR=0.412;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:94:145,0,94
chr2	135629927	rs12469941	C	T	5137.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.730e-01;DB;DP=55;ExcessHet=3.0103;FS=0.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=1.27;SOR=0.855;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1736,165,0
chr2	135677161	rs3769025	A	G	376.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=2.17;SOR=0.551;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:143,0,276
chr2	135694379	rs1374289	C	T	2591.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.210e+00;DB;DP=24;ExcessHet=3.0103;FS=1.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=-6.030e-01;SOR=0.495;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:782,72,0
chr2	135705558	rs1979033	G	A	5758.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.372e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=1.80;SOR=0.695;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1532,131,0
chr2	135710322	rs10166142	A	G	7443.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-2.760e-01;SOR=0.733;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2843,291,0
chr2	135711516	rs3814355	C	T	3750.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.706e+00;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=1.05;SOR=0.762;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:135711516_C_T:1106,108,0:135711516
chr2	135711657	rs3814354	G	A	7677.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.371e+00;DB;DP=91;ExcessHet=3.0103;FS=0.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=0.640;SOR=0.620;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2729,272,0
chr2	135781301	rs7597802	A	T	206.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-1.242e+00;SOR=1.863;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:57:215,0,57
chr2	135781913	rs113030080	A	ACTATAAGTC	921.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=44;ExcessHet=3.0103;FS=1.331;MQ=60.00;MQRankSum=0.00;QD=20.94;ReadPosRankSum=-2.930e-01;SOR=1.179;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,22:44:99:930,0,2220
chr2	135809731	rs11302588	TA	T	145.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.230e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.349;SOR=0.551;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:154,0,191
chr2	135872646	rs4954220	C	A	229.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.00;SOR=0.922;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:238,0,426
chr2	135881656	rs62170244	T	C	386.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122e+00;DB;DP=27;ExcessHet=3.0103;FS=3.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=0.269;SOR=0.223;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:395,0,340
chr2	135887514	rs112212040	AT	A	43.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DB;DP=27;ExcessHet=3.0103;FS=2.556;MQ=60.00;MQRankSum=0.00;QD=1.60;ReadPosRankSum=-2.190e-01;SOR=1.961;VQSLOD=4.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,5:27:52:52,0,499
chr2	135887768	rs62170249	C	T	373.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810e-01;DB;DP=23;ExcessHet=3.0103;FS=2.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=1.65;SOR=1.609;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:382,0,275
chr2	135911422	rs17261772	T	C	3081.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.535e+00;DB;DP=69;ExcessHet=1.5490;FS=6.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=-8.190e-01;SOR=1.262;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,28:69:99:595,0,1071
chr2	135922290	rs62170257	C	A	783.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.114e+00;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-9.640e-01;SOR=0.709;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,31:74:99:792,0,1251
chr2	135922945	rs16831378	G	A	62.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:1:69,0,1
chr2	135926522	rs11558413	G	A	55.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=0.842;SOR=1.179;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,138
chr2	135927544	.	TAAA	T	373.19	PASS	AC=2;AF=1.00;AN=2;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=26.04;SOR=4.615;VQSLOD=4.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:390,27,0
chr2	136070923	rs368770114	CA	C	141.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.820e-01;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.44;ReadPosRankSum=-1.043e+00;SOR=0.242;VQSLOD=5.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,2:7:29:29,0,70
chr2	136148394	rs202232784	GA	G	193.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=11;ExcessHet=6.9897;FS=4.499;MQ=60.00;MQRankSum=0.00;QD=7.46;ReadPosRankSum=-9.500e-02;SOR=0.170;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:11:52:98,0,52
chr2	136373848	rs145389340	CAGTTT	C	1351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=111;ExcessHet=3.0103;FS=2.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.044;SOR=0.998;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,38:111:99:1360,0,4315
chr2	136393658	rs961360	A	G	2496.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=105;ExcessHet=3.9794;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.324;SOR=0.955;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,53:105:99:1372,0,1466
chr2	136396300	rs2278731	T	C	1159.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DB;DP=49;ExcessHet=3.9794;FS=0.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=1.55;SOR=0.600;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,27:49:99:647,0,492
chr2	136407445	rs1446586	A	G	3137.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e+00;DB;DP=127;ExcessHet=3.9794;FS=0.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-4.630e-01;SOR=0.752;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,54:127:99:1225,0,1847
chr2	136407479	rs1446585	A	G	6754.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.310e-01;DB;DP=151;ExcessHet=1.5490;FS=0.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-6.390e-01;SOR=0.742;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,69:151:99:1583,0,1964
chr2	136433223	rs2307727	C	CTT	366.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=-1.282e+00;SOR=3.258;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:35:158,0,35
chr2	136437615	rs3769016	A	G	398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218e+00;DB;DP=11;ExcessHet=3.9794;FS=3.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.991;SOR=0.123;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:90:90,0,255
chr2	136467119	rs2304366	C	T	1400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DB;DP=46;ExcessHet=3.9794;FS=7.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.046;SOR=1.452;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:606,0,582
chr2	136467164	rs2304367	C	A	2643.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=-1.585e+00;SOR=3.500;VQSLOD=17.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,22:23:59:797,59,0
chr2	136479302	rs3754692	C	T	354.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=3.258;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	136481389	rs77967230	GTT	G	303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.95;ReadPosRankSum=1.03;SOR=0.693;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:312,0,298
chr2	136511874	rs16831997	C	T	237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQRankSum=-1.386e+00;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=-1.055e+00;SOR=0.454;VQSLOD=0.993;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,12:37:99:246,0,650
chr2	136527443	rs113881162	G	GTGAT	5082.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e+00;DB;DP=71;ExcessHet=1.5490;FS=3.213;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.97;ReadPosRankSum=-5.380e-01;SOR=0.474;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,29:71:99:1079,0,2275
chr2	136528006	rs2304600	A	G	324.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.99;SOR=4.407;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr2	136530248	rs58968019	G	A	152.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.870e-01;DB;DP=14;ExcessHet=3.0103;FS=4.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=1.11;SOR=0.061;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:161,0,327
chr2	136537911	rs62170084	G	A	511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.458;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:520,0,503
chr2	136545844	rs1042712	C	G	2620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.89;DB;DP=32;ExcessHet=3.0103;FS=1.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=0.266;SOR=0.547;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1158,96,0
chr2	136546110	rs2278544	A	G	916.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.713e+00;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.78;ReadPosRankSum=-1.386e+00;SOR=0.784;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:379,0,361
chr2	136548116	rs892717	G	C	506.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.46;SOR=5.136;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr2	136548169	rs892716	A	G	1447.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=4.294;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:558,39,0
chr2	136548192	rs1808756	G	A	1738.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=3.657;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:674,51,0
chr2	136552512	rs67420228	A	AC	713.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.30;SOR=5.784;VQSLOD=7.09;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:136552512_A_AC:300,21,0:136552512
chr2	136552526	rs3816155	A	C	407.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.16;ReadPosRankSum=1.04;SOR=1.981;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:136552512_A_AC:225,15,0:136552512
chr2	136555484	rs1807356	T	C	450.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.275e+00;DB;DP=42;ExcessHet=3.0103;FS=8.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=2.49;SOR=0.116;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:459,0,694
chr2	136555659	rs2322659	T	C	6669.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=144;ExcessHet=1.5490;FS=6.931;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=0.388;SOR=0.741;VQSLOD=7.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,79:144:99:2080,0,1543
chr2	136558157	rs748841	C	T	2249.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DB;DP=40;ExcessHet=1.5490;FS=2.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-1.671e+00;SOR=1.134;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:653,0,367
chr2	136561557	rs2304371	G	A	8335.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.614e+00;DB;DP=102;ExcessHet=3.0103;FS=0.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=1.27;SOR=0.635;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3118,305,0
chr2	136562472	rs3739022	G	A	1737.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DB;DP=147;ExcessHet=3.0103;FS=0.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.593;SOR=0.798;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,68:147:99:1746,0,2103
chr2	136562813	rs10928548	T	C	1320.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.20;SOR=7.168;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:414,33,0
chr2	136565028	rs10928549	C	G	5933.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=32.73;SOR=4.558;VQSLOD=4.21;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1584,120,0
chr2	136567633	rs6430591	A	G	739.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=3.716;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	136569848	rs12988076	C	A	795.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=16;ExcessHet=1.5490;FS=4.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=0.943;SOR=2.437;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,3:16:80:80,0,437
chr2	136570613	rs3769011	A	T	631.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.926;DB;DP=37;ExcessHet=3.0103;FS=1.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=-7.120e-01;SOR=1.013;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:640,0,398
chr2	136575199	rs6719488	G	T	14270.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;DB;DP=350;ExcessHet=1.5490;FS=0.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=1.46;SOR=0.614;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:159,191:350:99:4794,0,3772
chr2	136575534	rs4954449	T	C	14112.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=0.774;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3750,358,0
chr2	136581354	rs895284	T	G	463.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.53;SOR=3.442;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr2	136586958	rs10186843	C	A	1117.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.94;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:250,0,228
chr2	136587400	rs112405940	A	AGTGTGT	491.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=5.136;VQSLOD=6.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	136590558	rs3754690	C	T	350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070e+00;DB;DP=28;ExcessHet=3.0103;FS=1.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.06;SOR=0.446;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:359,0,381
chr2	136594158	rs2236783	G	A	5739.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=138;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-8.640e-01;SOR=0.697;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,65:138:99:1663,0,1767
chr2	136610598	rs4988226	A	G	3158.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.620e-01;DB;DP=52;ExcessHet=3.9794;FS=2.837;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=0.713;SOR=1.101;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:850,0,626
chr2	136614255	rs309180	G	A	2454.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=43;ExcessHet=3.9794;FS=5.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=-4.970e-01;SOR=1.242;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:444,0,628
chr2	136616754	rs182549	C	T	398.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590e-01;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=-8.160e-01;SOR=1.609;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:127,0,190
chr2	136622825	rs309177	A	G	3531.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.62;SOR=3.589;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1053,95,0
chr2	136633771	rs191079	T	C	2398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.095e+00;DB;DP=80;ExcessHet=3.9794;FS=3.095;MQ=60.00;MQRankSum=0.00;QD=15.67;ReadPosRankSum=1.13;SOR=1.066;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,40:80:99:1172,0,1128
chr2	136664812	.	CT	C	171.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.246;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.81;ReadPosRankSum=1.07;SOR=0.446;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:84:104,0,84
chr2	136671801	rs2164332	G	C	56.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-2.530e-01;SOR=0.446;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,116
chr2	136690414	rs34744196	TA	T	619.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=17;ExcessHet=3.9794;FS=3.972;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=0.442;SOR=1.734;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:17:90:90,0,209
chr2	136740900	rs687670	T	C	1033.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=42;ExcessHet=3.9794;FS=2.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.814;SOR=1.005;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,14:42:99:322,0,670
chr2	136873549	rs2680880	A	T	569.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DB;DP=48;ExcessHet=3.0103;FS=1.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-1.200e+00;SOR=0.402;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:578,0,605
chr2	137087324	rs13003740	A	G	4792.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.805e+00;DB;DP=89;ExcessHet=1.5490;FS=3.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=0.044;SOR=0.447;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2997,267,0
chr2	137639616	rs1465612	C	T	1314.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.72;SOR=4.863;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr2	137640006	rs11298935	CT	C	1023.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.94;ReadPosRankSum=-6.480e-01;SOR=3.003;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:61:183,0,61
chr2	137814477	rs17727482	C	G	6488.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.044e+00;DB;DP=108;ExcessHet=3.9794;FS=0.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-2.400e-01;SOR=0.646;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3441,323,0
chr2	137872992	rs745908	A	G	698.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=5.892;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr2	137917922	rs4954474	T	A	7078.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.644e+00;DB;DP=150;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=-7.350e-01;SOR=0.677;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4639,448,0
chr2	138000226	rs7605259	T	C	4459.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.76;ReadPosRankSum=0.479;SOR=0.597;VQSLOD=7.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,49:49:99:1|1:138000226_T_C:1460,147,0:138000226
chr2	138163391	rs1551281	T	C	3021.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.76;SOR=2.920;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1167,96,0
chr2	138169158	rs1463285	T	C	3568.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.97;SOR=2.857;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1019,84,0
chr2	138208631	rs1453302	G	T	3169.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.293e+00;DB;DP=45;ExcessHet=3.9794;FS=2.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=-1.720e-01;SOR=1.341;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1790,135,0
chr2	138237038	rs1584435	C	T	3097.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.28;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=0.332;SOR=0.755;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1733,153,0
chr2	138721942	rs67985366	AT	A	883.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DB;DP=35;ExcessHet=6.9897;FS=3.907;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=0.068;SOR=1.338;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,11:35:99:219,0,272
chr2	139036688	rs6757587	C	G	4730.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=0.774;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1176,114,0
chr2	139036797	rs6728323	G	A	2894.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=2.010;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:827,69,0
chr2	139045444	rs11900034	T	A	521.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.423e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=56.35;MQRankSum=0.776;NEGATIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.451;SOR=0.733;VQSLOD=-2.683e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,8:9:14:0|1:139045444_T_A:259,0,14:139045444
chr2	139045445	rs11900035	T	A	1343.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.219;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=56.20;MQRankSum=3.78;NEGATIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=1.39;SOR=1.848;VQSLOD=-1.937e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:139045444_T_A:405,30,0:139045444
chr2	139045972	rs6733578	T	C	11981.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=34.04;SOR=0.904;VQSLOD=4.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3859,368,0
chr2	139046301	rs12691943	A	G	37136.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=402;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=30.09;SOR=0.719;VQSLOD=4.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,402:402:99:11744,1204,0
chr2	139046385	rs13382964	G	A	27640.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=1.516;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,263:263:99:8410,787,0
chr2	139308397	rs149244535	T	TTCTCTC,TTCTCTCTC	3882.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.370e-01;DB;DP=30;ExcessHet=3.0103;FS=4.826;MQ=59.75;MQRankSum=0.00;QD=33.18;ReadPosRankSum=0.732;SOR=0.308;VQSLOD=4.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,18,12:30:99:1433,437,345,582,0,477
chr2	139318332	rs35560905	CT	C	143.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=23.84;SOR=3.912;VQSLOD=2.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:159,18,0
chr2	139429068	rs10803570	G	A	5296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DB;DP=137;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.039;SOR=0.723;VQSLOD=6.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,67:137:99:1661,0,1778
chr2	140992337	rs13387241	C	A	10424.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.060;DB;DP=111;ExcessHet=3.0103;FS=1.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=0.254;SOR=0.494;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3379,332,0
chr2	141004513	rs11895946	C	T	2229.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.091e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=0.873;SOR=1.455;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:774,60,0
chr2	141004529	rs2129483	A	G	3720.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=4.555;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:953,78,0
chr2	141032088	rs1386356	C	T	8552.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.463;DB;DP=96;ExcessHet=3.0103;FS=1.018;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=0.767;SOR=0.777;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3091,288,0
chr2	141083159	rs654051	T	G	760.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.58;ReadPosRankSum=0.00;SOR=2.737;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:394,27,0
chr2	141113739	rs70985093	C	CACAA	1095.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.600;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=1.21;SOR=1.819;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:12:180,12,0
chr2	141113798	rs13017246	G	A	2397.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.180e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=-3.010e-01;SOR=0.693;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:728,57,0
chr2	141128977	rs634115	C	T	1045.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.55;DB;DP=4;ExcessHet=3.9794;FS=8.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=1.15;SOR=3.420;VQSLOD=14.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:23:110,0,23
chr2	141136007	rs652923	T	C	1301.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.53;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=0.317;SOR=2.007;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:508,36,0
chr2	141201763	rs4992954	T	C	1977.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.99;SOR=7.864;VQSLOD=24.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:314,24,0
chr2	141202412	rs2380793	C	T	533.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=5.283;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:423,30,0
chr2	141253408	rs11683334	T	C	1137.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.22;ReadPosRankSum=-5.890e-01;SOR=5.353;VQSLOD=14.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:16:320,0,16
chr2	141260668	rs4444457	A	G	6978.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.390e-01;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=-8.140e-01;SOR=0.661;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2026,201,0
chr2	141267744	rs1948051	T	C	2171.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.45;SOR=3.912;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:693,63,0
chr2	141272057	rs6430906	T	A	489.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.81;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=1.60;SOR=0.576;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:169,0,174
chr2	141274295	rs1542655	C	T	622.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=1.72;SOR=0.693;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:175,0,135
chr2	141274576	rs4954672	T	C	3210.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=130;ExcessHet=3.9794;FS=10.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.906;SOR=1.211;VQSLOD=19.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,52:130:99:1441,0,1989
chr2	141283603	rs1352047	T	G	5226.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.25;SOR=2.500;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1219,99,0
chr2	141284041	rs7562323	A	G	1223.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=26.67;SOR=4.112;VQSLOD=5.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:418,33,0
chr2	141291380	rs12692059	G	A	515.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.23;ReadPosRankSum=0.00;SOR=4.174;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:72,0,35
chr2	141291841	rs10928755	T	A	649.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.53;ReadPosRankSum=-4.310e-01;SOR=2.737;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:58:58,0,143
chr2	141291878	rs11695464	C	T	457.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.67;ReadPosRankSum=-1.383e+00;SOR=2.985;VQSLOD=19.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,80
chr2	141293974	rs139808240	G	A	137.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=-7.000e-01;SOR=0.527;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:146,0,193
chr2	141294285	.	GA	G	209.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.352;DP=42;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=2.28;ReadPosRankSum=-5.720e-01;SOR=0.521;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,9:42:97:97,0,714
chr2	141298467	rs6729619	A	C	2307.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300e-02;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.934;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.234;SOR=0.581;VQSLOD=2.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,11:26:99:278,0,454
chr2	141298674	rs13013854	T	C	5820.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.07;ReadPosRankSum=1.28;SOR=0.791;VQSLOD=6.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,26:51:99:0|1:141298674_T_C:1014,0,1088:141298674
chr2	141298682	rs11694934	G	C	6293.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-01;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.15;ReadPosRankSum=0.566;SOR=0.643;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,26:51:99:0|1:141298674_T_C:1017,0,1061:141298674
chr2	141298749	rs11694970	G	C	2198.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=24;ExcessHet=3.0103;FS=5.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.12;ReadPosRankSum=-1.194e+00;SOR=1.883;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:251,0,359
chr2	141299317	rs9287535	A	G	6056.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=51;ExcessHet=3.0103;FS=2.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=0.279;SOR=1.140;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,36:51:99:955,0,312
chr2	141344063	rs113722176	C	A	42.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.52;ReadPosRankSum=1.40;SOR=0.693;VQSLOD=21.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:51:51,0,294
chr2	141344200	rs56148568	T	C	921.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=57;ExcessHet=3.0103;FS=1.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-8.030e-01;SOR=0.465;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,36:57:99:930,0,388
chr2	141356125	rs114367995	T	C	359.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-5.810e-01;SOR=0.954;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:368,0,650
chr2	141358876	rs34284556	TA	T	376.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=1.22;SOR=0.836;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,8:9:2:184,0,2
chr2	141460317	rs12466110	T	A	243.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr2	141473409	rs10716305	CA	C	445.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=10;ExcessHet=6.9897;FS=2.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.061;SOR=1.251;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:207,0,128
chr2	141473505	rs4954852	A	T	1941.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=41;ExcessHet=6.9897;FS=2.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.465;SOR=0.995;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,30:41:99:781,0,212
chr2	141473786	rs17513410	C	T	341.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.000e-02;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.07;SOR=1.609;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr2	141474402	rs5834770	G	GA	2647.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=0.209;SOR=0.743;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:987,102,0
chr2	141474456	rs1372255	C	T	921.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774e+00;DB;DP=14;ExcessHet=6.9897;FS=2.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=0.586;SOR=1.609;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:314,0,133
chr2	141526600	rs11421307	A	AT	618.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.055;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.201;SOR=2.621;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chr2	141527013	rs13002947	A	G	3408.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.510e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=0.192;SOR=0.695;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1106,96,0
chr2	141528592	rs7599219	T	C	6752.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.297;DB;DP=78;ExcessHet=3.0103;FS=1.920;MQ=60.00;MQRankSum=-1.089e+00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=1.52;SOR=0.872;VQSLOD=1.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2244,232,0
chr2	141533662	rs996361	T	C	2572.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693e+00;DB;DP=19;ExcessHet=3.0103;FS=2.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.98;ReadPosRankSum=0.027;SOR=0.400;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:665,57,0
chr2	141571329	rs3749010	T	C	16351.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=1.020;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,180:182:99:5232,538,0
chr2	141571440	rs17575847	C	G	4325.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=64;ExcessHet=3.9794;FS=1.839;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.77;ReadPosRankSum=1.32;SOR=0.465;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2284,192,0
chr2	141571456	rs60071104	G	GA	2198.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=-4.100e-01;SOR=0.880;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1184,117,0
chr2	141571480	rs17575875	A	G	2347.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.260e-01;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.80;ReadPosRankSum=0.400;SOR=0.527;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1254,99,0
chr2	141598473	rs35745624	A	AT	10998.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=25.71;SOR=2.007;VQSLOD=5.13;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3580,273,0
chr2	141625834	rs34488899	TA	T	267.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=20;ExcessHet=6.9897;FS=2.450;MQ=59.82;MQRankSum=0.00;QD=4.25;ReadPosRankSum=0.259;SOR=1.137;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,7:20:94:94,0,199
chr2	141707694	rs1980343	C	T	1221.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.74;ReadPosRankSum=0.00;SOR=5.486;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:147,0,27
chr2	141709419	rs1429348	T	G	6214.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=101;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=0.428;SOR=0.683;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,45:101:99:1089,0,1390
chr2	141762830	rs13413663	C	T	1477.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=5.136;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:453,36,0
chr2	141771058	rs3791766	T	A	1588.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.76;SOR=3.767;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:532,42,0
chr2	141777763	rs12615322	G	T	684.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=5.784;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr2	141806410	rs2140871	A	C	713.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=5.892;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr2	141816621	rs1525579	A	G	2818.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.28;SOR=3.412;VQSLOD=21.39;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,27:27:81:957,81,0
chr2	141945852	rs1249433	C	T	407.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.09;ReadPosRankSum=0.524;SOR=1.061;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,113
chr2	141945949	rs1249434	C	T	3021.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.73;SOR=2.807;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:654,60,0
chr2	142044507	.	G	A	155.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DP=15;ExcessHet=3.0103;FS=3.136;MQ=60.00;MQRankSum=0.00;QD=10.35;ReadPosRankSum=-1.645e+00;SOR=2.066;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:164,0,290
chr2	142237728	rs144599374	TTGTGTGTGTGTGTG	T	514.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.71;ReadPosRankSum=0.967;SOR=2.985;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,161
chr2	142237868	rs4264514	G	A	1282.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.060e-01;DB;DP=11;ExcessHet=3.9794;FS=15.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=0.525;SOR=3.056;VQSLOD=12.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:204,0,159
chr2	142301879	.	C	CTTCTTCTTCTTCTTCTTCTT,CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT	533.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=12;ExcessHet=0.4576;FS=0.000;MQ=58.31;QD=34.98;SOR=1.981;VQSLOD=4.52;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,9,3:12:97:551,125,97,355,0,357
chr2	142301983	rs62169786	T	C	351.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.58;SOR=4.615;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:232,18,0
chr2	142567616	rs10496901	A	T	98.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:107,0,28
chr2	142567680	rs72101254	GAA	G	1094.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.74;SOR=6.439;VQSLOD=5.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:28:399,28,0
chr2	142567710	.	GAA	G	496.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.500e-01;DP=27;ExcessHet=3.9794;FS=2.236;MQ=60.00;MQRankSum=0.00;QD=11.82;ReadPosRankSum=-1.214e+00;SOR=0.286;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,14:27:99:0|1:142567710_GAA_G:505,0,476:142567710
chr2	142567717	.	AGAAAGAAAGAAAGAAAGAAG	A	856.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.010e-01;DP=32;ExcessHet=1.5490;FS=1.998;MQ=60.00;MQRankSum=0.00;QD=18.23;ReadPosRankSum=-1.821e+00;SOR=1.312;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,14:32:99:0|1:142567710_GAA_G:490,0,660:142567710
chr2	142567910	rs12990449	T	C	2159.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-01;DB;DP=84;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.882;SOR=0.720;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1081,0,918
chr2	142888107	rs7594671	G	T	465.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.24;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.674;SOR=1.251;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:474,0,593
chr2	142888376	rs1375610	G	C	3650.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413e+00;DB;DP=161;ExcessHet=3.9794;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.106;SOR=0.511;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,90:161:99:2163,0,1723
chr2	143676141	rs35434351	AT	A	582.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.330e-01;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-6.250e-01;SOR=1.022;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:104,0,144
chr2	143787161	rs6429999	C	A	2325.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=31;ExcessHet=3.0103;FS=2.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=-6.680e-01;SOR=0.971;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:99:971,105,0
chr2	143787274	rs6430000	C	T	4519.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=1.209;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1064,116,0
chr2	143790793	rs17808482	T	C	341.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=25;ExcessHet=3.0103;FS=1.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-5.990e-01;SOR=1.270;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:350,0,298
chr2	143913004	rs2580857	T	G	2383.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=2.566;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:618,54,0
chr2	143959863	rs62171700	C	T	802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974e+00;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.055;SOR=0.715;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,30:63:99:811,0,976
chr2	143959892	rs34183792	C	T	556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.801;SOR=0.634;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:565,0,628
chr2	143960018	rs34583638	T	C	191.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=1.07;SOR=1.609;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:63:200,0,63
chr2	143960031	rs62171701	G	A	137.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=1.83;SOR=1.329;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:59:146,0,59
chr2	143960080	rs34228828	A	G	104.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:113,0,32
chr2	143973860	rs1451805	G	A	4081.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.59;DB;DP=52;ExcessHet=3.9794;FS=1.147;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.735;SOR=0.607;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1599,156,0
chr2	143986002	rs12691671	T	C	246.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=-3.430e-01;SOR=0.551;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:255,0,497
chr2	144007891	rs6717176	G	C	64.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:73,0,36
chr2	144007986	rs6430017	T	C	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.640e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=1.66;SOR=0.551;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:286,0,199
chr2	144193151	rs11438710	C	CT,CTT	2560.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.000e-02;DB;DP=47;ExcessHet=3.9794;FS=2.972;MQ=59.83;MQRankSum=-3.960e-01;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=0.340;SOR=1.101;VQSLOD=1.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:8,25,14:47:99:799,163,223,357,0,547
chr2	144194824	rs13019302	A	G	201.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.86;SOR=3.611;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	144245287	rs3795872	G	A	66.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=2.303;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	144314247	rs6734367	T	G	1125.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.15;ReadPosRankSum=0.269;SOR=1.981;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:330,0,120
chr2	144764659	rs141458834	TAAG	T	389.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=-3.060e-01;SOR=1.609;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,10:15:99:398,0,218
chr2	144899559	rs3731958	C	A	4635.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=62;ExcessHet=3.0103;FS=3.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=0.840;SOR=1.047;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,25:62:99:603,0,914
chr2	144934655	rs5834992	A	AG	2659.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=2.891;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:692,66,0
chr2	144934819	rs5834993	T	TA	1756.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=58;ExcessHet=3.9794;FS=4.135;MQ=60.00;MQRankSum=0.00;QD=12.91;ReadPosRankSum=-2.400e-02;SOR=1.054;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,25:58:99:480,0,500
chr2	145120947	rs77229859	C	G	484.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.91;ReadPosRankSum=-4.640e-01;SOR=1.493;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:64:64,0,230
chr2	145121339	rs10206546	G	A	582.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=-1.550e-01;SOR=1.101;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:591,0,383
chr2	145147758	rs16855324	C	T	117.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.240e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=1.15;SOR=0.269;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:126,0,296
chr2	145155731	rs10185359	T	C	1342.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.57;ReadPosRankSum=-9.700e-02;SOR=0.400;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:86:289,0,86
chr2	145255210	rs12691693	T	C	4439.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.860e-01;DB;DP=71;ExcessHet=3.9794;FS=0.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=-7.960e-01;SOR=0.782;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,70:71:99:2102,171,0
chr2	145255399	.	TATATATATATATGTCATTCTCAACATATATATATATATGTCATTCTCAAC	T	1758.92	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.21;SOR=5.136;VQSLOD=5.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:49:461,49,0
chr2	148657589	rs2288190	A	G	800.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.033e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.362;SOR=1.542;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:436,33,0
chr2	148675779	rs4972315	G	A	1313.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=30.79;SOR=6.994;VQSLOD=6.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:373,27,0
chr2	148680845	rs10180655	G	C	115.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:123,0,31
chr2	148683919	rs12620026	A	T	190.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=3.912;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
chr2	148731252	rs1378081	T	C	671.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.82;SOR=5.784;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr2	148733548	rs2307399	T	TA	2830.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.905;SOR=0.754;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,16:37:99:377,0,490
chr2	149240657	rs5835195	GT	G	5496.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=56;ExcessHet=3.0103;FS=3.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.649;SOR=1.405;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:6,50:56:10:1157,10,0
chr2	149243260	rs2121344	G	A	931.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.75;DB;DP=14;ExcessHet=3.9794;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=0.257;SOR=0.155;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:495,42,0
chr2	149259869	rs115609480	A	G	489.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-1.167e+00;SOR=0.399;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:498,0,192
chr2	149449185	rs6724787	G	A	2776.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.190e-01;DB;DP=99;ExcessHet=3.9794;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.158;SOR=0.851;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,51:99:99:1248,0,1268
chr2	149520186	rs12622667	T	C	434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=-9.520e-01;SOR=1.493;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:443,0,194
chr2	149520214	rs10193313	C	A	1590.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.885e+00;DB;DP=33;ExcessHet=1.5490;FS=1.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=-1.361e+00;SOR=1.053;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1163,99,0
chr2	149529083	rs4972266	T	C	1301.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.02;SOR=5.486;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:479,33,0
chr2	149539060	rs2289996	T	G	245.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.42;SOR=2.584;VQSLOD=19.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr2	149793612	rs73966656	A	T	145.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.46;SOR=0.693;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr2	149798213	rs73970609	G	A	1376.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.27;SOR=0.850;VQSLOD=18.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1393,117,0
chr2	149798919	rs73970611	T	A	220.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.44;SOR=3.912;VQSLOD=19.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr2	149799216	rs61734995	T	C	5026.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.89;SOR=0.764;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5043,521,0
chr2	149803357	rs73962006	A	T	1578.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=1.654;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1595,158,0
chr2	149804704	rs374887511	TA	T	392.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.315e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.44;MQRankSum=0.00;QD=15.09;ReadPosRankSum=0.272;SOR=2.147;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,5:8:1:120,1,0
chr2	149806388	rs60169973	C	T	1560.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.00;SOR=0.770;VQSLOD=18.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1577,156,0
chr2	149835264	rs60693991	G	A	441.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.15;SOR=3.611;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:458,36,0
chr2	149838132	rs11901442	T	G	112.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=2.833;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr2	149851069	rs187417929	C	T	868.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.400e-02;DB;DP=67;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.435;SOR=0.984;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,37:67:99:877,0,697
chr2	149853960	rs6738277	A	G	4357.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.01;SOR=1.592;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1453,141,0
chr2	149861679	rs6435220	G	A	266.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.85;SOR=4.174;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr2	150043783	rs6719954	A	G	147.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=1.981;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:159,15,0
chr2	150070892	rs6711281	T	C	717.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=0.866;SOR=1.284;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:316,24,0
chr2	150320627	rs34341723	TA	T	891.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-01;DB;DP=23;ExcessHet=3.9794;FS=2.377;MQ=60.00;MQRankSum=0.00;QD=14.14;ReadPosRankSum=0.635;SOR=1.071;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,4:23:20:20,0,369
chr2	150426399	rs6742604	A	G	1203.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.65;POSITIVE_TRAIN_SITE;QD=25.79;SOR=5.353;VQSLOD=4.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:339,27,0
chr2	150428849	.	C	CAAAAAAAAAAAAA	489.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=-6.740e-01;SOR=0.941;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,1:6:99:152,0,705
chr2	150432976	rs11545261	C	T	5567.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=0.227;SOR=0.687;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:798,0,596
chr2	150443347	rs142269975	TA	T	46.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:23:55,0,23
chr2	150443689	rs4667420	C	G	9042.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=117;ExcessHet=3.0103;FS=3.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-1.118e+00;SOR=0.845;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,54:117:99:1357,0,1524
chr2	150443813	rs4667419	C	T	3874.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.906e+00;DB;DP=52;ExcessHet=3.0103;FS=2.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=-3.700e-02;SOR=1.168;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:748,0,895
chr2	151328284	rs11338446	GA	G	3866.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.710e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=1.23;SOR=0.401;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,40:41:96:1084,96,0
chr2	151343674	rs72865945	C	T	308.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.605;QD=11.02;ReadPosRankSum=0.327;SOR=0.576;VQSLOD=0.795;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:19:99:152,0,442
chr2	151343675	rs73967183	T	C	300.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.605;QD=10.73;ReadPosRankSum=0.532;SOR=0.576;VQSLOD=0.779;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:19:99:152,0,442
chr2	151343988	rs2334309	A	T	269.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.17;DB;DP=11;ExcessHet=0.7918;FS=5.643;MQ=60.00;MQRankSum=0.00;QD=24.51;ReadPosRankSum=-1.112e+00;SOR=2.225;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,10:11:9:283,9,0
chr2	151857799	rs6709096	A	T	1091.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=38;ExcessHet=3.9794;FS=0.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=1.59;SOR=0.563;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:444,0,425
chr2	151900223	rs7589036	T	C	13180.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.53;SOR=1.249;VQSLOD=4.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4597,462,0
chr2	151900390	rs150701043	TAAAAAC	T	3194.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.827e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.65;ReadPosRankSum=-2.820e-01;SOR=3.834;VQSLOD=3.50;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,11:21:99:0|1:151900390_TAAAAAC_T:433,0,645:151900390
chr2	151903983	rs10167188	A	C	582.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.76;SOR=5.421;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	152108261	rs4665119	T	G	3533.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=2.101;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:694,54,0
chr2	152108405	rs4665120	G	T	624.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=5.784;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	152109159	rs289885	C	T	3378.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=3.586;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:699,57,0
chr2	152117957	rs2271813	T	C	583.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=57;ExcessHet=3.0103;FS=4.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.156;SOR=1.292;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,22:57:99:592,0,918
chr2	152214424	rs3821322	C	T	218.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.56;SOR=3.912;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr2	152224796	rs115820523	T	G	403.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.471;SOR=0.793;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:412,0,399
chr2	152224940	rs10432475	A	G	59.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:53:68,0,53
chr2	152226570	rs1046668	A	G	1134.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.772e+00;DB;DP=81;ExcessHet=3.0103;FS=3.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-1.201e+00;SOR=0.387;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,47:81:99:1143,0,903
chr2	152229907	rs58377527	C	T	329.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.450e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=-9.350e-01;SOR=0.527;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:68:338,0,68
chr2	152230258	rs35356355	C	CA	109.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.06;ReadPosRankSum=-1.501e+00;SOR=0.512;VQSLOD=5.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:25:103,0,25
chr2	152236045	rs35060021	TA	T	598.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=24;ExcessHet=1.5490;FS=2.612;MQ=60.00;MQRankSum=0.00;QD=17.11;ReadPosRankSum=0.170;SOR=0.275;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,22:24:71:596,71,0
chr2	152266311	rs4664423	T	C	365.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=1.90;SOR=0.481;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:66:216,0,66
chr2	152266473	rs2290368	T	C	3678.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920e-01;DB;DP=89;ExcessHet=6.9897;FS=1.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-4.340e-01;SOR=0.790;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,33:89:99:867,0,1477
chr2	152266731	rs2290367	T	A	1241.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=15;ExcessHet=6.9897;FS=7.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.042;SOR=1.682;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:252,0,246
chr2	152267061	rs73004072	G	A	2468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.490e-01;DB;DP=168;ExcessHet=3.0103;FS=1.263;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-1.170e-01;SOR=0.572;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,102:168:99:2477,0,1485
chr2	152267072	rs4664045	T	G	6174.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DB;DP=151;ExcessHet=6.9897;FS=1.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.933;SOR=0.794;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,88:151:99:2264,0,1525
chr2	152267672	rs7585604	G	A	2106.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.58;SOR=5.058;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:466,36,0
chr2	152267897	rs147405197	G	GT	433.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-01;DB;DP=19;ExcessHet=6.9897;FS=1.469;MQ=60.00;MQRankSum=0.00;QD=9.04;ReadPosRankSum=-1.175e+00;SOR=0.354;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,3:19:23:23,0,371
chr2	152273503	rs6735771	G	A	1521.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=0.923;SOR=0.803;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:65:645,65,0
chr2	152298251	rs114157860	T	C	95.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:104,0,66
chr2	152317905	.	ATT	A	254.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.26;ReadPosRankSum=0.00;SOR=0.479;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:12:91:123,0,91
chr2	152359276	rs201290038	AT	A	77.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.03;ReadPosRankSum=-1.000e-01;SOR=0.379;VQSLOD=5.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,2:15:8:8,0,297
chr2	152369117	rs13023600	T	C	4027.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.80;SOR=4.174;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1237,105,0
chr2	152402515	rs10687343	T	TA	1654.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.920e-01;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;QD=11.82;ReadPosRankSum=0.534;SOR=0.639;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,13:57:99:138,0,682
chr2	152403071	rs11436330	C	CT	355.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.663;SOR=0.631;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,3:19:7:7,0,234
chr2	152410513	rs182847302	C	T	885.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=89;ExcessHet=3.0103;FS=2.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=0.037;SOR=0.558;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,37:89:99:894,0,1264
chr2	152419392	rs74684819	A	T	440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=0.534;SOR=0.990;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:449,0,305
chr2	152420265	rs62174683	G	A	877.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=73;ExcessHet=3.0103;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.663;SOR=0.507;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,35:73:99:886,0,1004
chr2	152422076	rs2288210	C	G	12101.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.111e+00;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.21;ReadPosRankSum=-4.500e-01;SOR=0.735;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,52:114:99:1304,0,1859
chr2	152423605	rs3732311	G	A	259.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-9.840e-01;SOR=0.275;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:268,0,254
chr2	152424933	rs3214503	T	TA	1177.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=17;ExcessHet=3.9794;FS=2.563;MQ=60.00;MQRankSum=0.00;QD=18.99;ReadPosRankSum=0.830;SOR=0.365;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:132,0,211
chr2	152425306	rs79849542	G	T	332.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=20;ExcessHet=3.0103;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=0.568;SOR=2.670;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:341,0,278
chr2	152426349	rs11900890	T	C	55.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-6.740e-01;SOR=0.105;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,66
chr2	152427249	rs7568873	A	G	1898.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DB;DP=15;ExcessHet=3.0103;FS=2.015;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.67;ReadPosRankSum=0.061;SOR=1.437;VQSLOD=6.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:94:261,0,94
chr2	152432311	rs33988153	T	C	434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;DB;DP=49;ExcessHet=3.0103;FS=1.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=2.46;SOR=1.048;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,21:49:99:443,0,593
chr2	152447754	.	A	G	90.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=10;ExcessHet=3.0103;FS=0.000;MQ=40.51;MQRankSum=-6.360e-01;QD=9.03;ReadPosRankSum=0.872;SOR=0.223;VQSLOD=-4.654e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:99,0,225
chr2	152448791	rs200793308	AAACT	A	222.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=38.52;MQRankSum=-1.304e+00;QD=17.10;ReadPosRankSum=1.34;SOR=0.569;VQSLOD=0.309;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:231,0,382
chr2	152467001	rs11902616	C	T	658.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-1.019e+00;SOR=0.769;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,24:56:99:667,0,840
chr2	152473986	.	CA	C	101.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290e-01;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.43;ReadPosRankSum=0.505;SOR=0.616;VQSLOD=5.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,5:35:32:32,0,563
chr2	152475910	rs58135483	C	T	118.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-1.790e-01;SOR=1.981;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,187
chr2	152476130	rs6717213	C	T	1165.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=77;ExcessHet=3.0103;FS=3.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-1.991e+00;SOR=0.428;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,42:77:99:1174,0,995
chr2	152490219	rs6709886	A	G	13108.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DB;DP=144;ExcessHet=3.0103;FS=0.741;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.45;ReadPosRankSum=-1.109e+00;SOR=0.573;VQSLOD=6.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,66:144:99:1586,0,1905
chr2	152490458	rs6710212	A	G	9218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=1.079;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2798,278,0
chr2	152496038	rs13032138	G	A	640.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=0.752;SOR=0.407;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:342,0,198
chr2	152496526	rs6713162	A	G	1897.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=54;ExcessHet=3.9794;FS=0.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=1.49;SOR=0.625;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:746,0,704
chr2	152499501	rs35172004	T	A	174.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=1.29;SOR=1.329;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:183,0,101
chr2	152499580	rs4664494	C	T	178.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=-2.100e-01;SOR=2.303;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:187,0,22
chr2	152500449	rs13013209	C	G	960.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622e+00;DB;DP=85;ExcessHet=3.0103;FS=0.811;MQ=59.43;MQRankSum=-2.200e-01;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.739e+00;SOR=0.791;VQSLOD=0.735;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,36:85:99:969,0,1538
chr2	152511778	rs10930723	A	C	1463.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375e+00;DB;DP=47;ExcessHet=3.9794;FS=3.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=1.46;SOR=0.425;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,28:47:99:647,0,452
chr2	152513112	rs35059848	TCA	T	108.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:34:116,0,34
chr2	152514753	rs4536649	T	C	190.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-8.400e-02;SOR=0.293;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:61:75,0,61
chr2	152520027	rs12620077	A	G	1140.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647e+00;DB;DP=54;ExcessHet=3.9794;FS=4.961;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=1.68;SOR=0.349;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:493,0,698
chr2	152521096	rs10170273	C	T	2383.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=86;ExcessHet=3.9794;FS=3.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=2.02;SOR=0.943;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,50:86:99:1366,0,838
chr2	152521539	rs12328501	A	G	594.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-1.561e+00;SOR=0.201;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:176,0,144
chr2	152522556	rs4664496	T	C	1242.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.884;SOR=0.750;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:566,0,677
chr2	152525471	rs58903550	A	G	1524.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=52;ExcessHet=3.9794;FS=10.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=1.53;SOR=1.649;VQSLOD=17.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,22:52:99:581,0,721
chr2	152527572	rs7426114	C	T	5011.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DB;DP=74;ExcessHet=3.9794;FS=0.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=0.815;SOR=0.632;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,44:74:99:1043,0,714
chr2	152527608	rs34577613	C	T	2621.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=88;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.823;SOR=0.670;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,35:88:99:810,0,1327
chr2	152531077	rs6711382	A	G	7922.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014e+00;DB;DP=106;ExcessHet=3.0103;FS=1.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=0.813;SOR=0.744;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,58:106:99:1344,0,1222
chr2	152531781	rs12618063	C	A	1076.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293e+00;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-8.940e-01;SOR=0.663;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1085,0,1219
chr2	152536498	rs6735208	T	A	8389.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347e+00;DB;DP=88;ExcessHet=3.0103;FS=2.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=1.21;SOR=0.958;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,37:88:99:1006,0,1509
chr2	152541134	rs7564674	T	C	436.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.718e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=0.00;SOR=2.448;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr2	152550727	rs74532673	T	C	207.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.337;SOR=0.368;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:216,0,206
chr2	152551210	rs10193188	G	A	357.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=1.20;SOR=0.299;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:92:92,0,301
chr2	152552062	rs6433569	A	C	5338.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=52;ExcessHet=3.9794;FS=0.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=1.05;SOR=0.610;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:833,0,567
chr2	152552342	rs4564766	T	A	190.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=-8.420e-01;SOR=0.859;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:60:102,0,60
chr2	152566433	rs12464543	A	G	3476.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DB;DP=30;ExcessHet=3.0103;FS=3.018;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.50;ReadPosRankSum=0.207;SOR=1.347;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:438,0,464
chr2	152573902	rs34733773	A	AGGC	8155.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=91;ExcessHet=3.9794;FS=0.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=1.47;SOR=0.634;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,45:91:99:1751,0,2043
chr2	152573981	rs4611637	A	G	7528.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.740e-01;DB;DP=134;ExcessHet=3.9794;FS=0.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=0.281;SOR=0.742;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,74:134:99:1791,0,1411
chr2	152581866	rs4300824	T	C	4301.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;DB;DP=74;ExcessHet=3.9794;FS=0.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=1.02;SOR=0.771;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,41:74:99:1061,0,775
chr2	152584153	rs4664499	A	C	6563.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=62;ExcessHet=3.0103;FS=0.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.324;SOR=0.639;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,22:62:99:564,0,1164
chr2	152668750	rs2030588	C	A	113.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:1:73,0,1
chr2	152684704	rs150910136	A	AC	10099.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DB;DP=160;ExcessHet=3.9794;FS=1.341;MQ=59.92;MQRankSum=-3.960e-01;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=-6.820e-01;SOR=0.851;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:105,55:160:99:1098,0,2523
chr2	152729138	rs770609	T	C	719.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.43;SOR=5.784;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:262,18,0
chr2	152827765	rs6719642	T	A	30.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.42;SOR=1.609;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
chr2	152827973	rs7567588	A	G	5025.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.10;SOR=2.426;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2437,201,0
chr2	152828281	rs7607341	C	G	2174.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.52;SOR=3.021;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:927,84,0
chr2	152976909	rs58778946	GA	G	140.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.57;ReadPosRankSum=1.37;SOR=1.061;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,0:7:10:10,0,91
chr2	153000337	rs12617139	T	A	3341.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.890e-01;DB;DP=52;ExcessHet=3.9794;FS=11.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=-4.170e-01;SOR=1.628;VQSLOD=16.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:792,0,534
chr2	153004736	rs72864741	C	T	2116.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.186;DB;DP=54;ExcessHet=3.9794;FS=2.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=1.95;SOR=0.769;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:730,0,579
chr2	153191866	rs10200831	A	G	2305.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=6.869;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:562,45,0
chr2	153192324	rs2003332	C	T	3394.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.76;DB;DP=64;ExcessHet=1.5490;FS=11.889;MQ=60.00;MQRankSum=0.00;QD=26.94;ReadPosRankSum=1.98;SOR=3.447;VQSLOD=10.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,29:64:99:951,0,1024
chr2	153378459	rs4664114	T	C	4536.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.698e+00;DB;DP=54;ExcessHet=3.0103;FS=2.498;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=-2.270e-01;SOR=0.475;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1677,162,0
chr2	153378574	rs4664592	A	G	1107.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=2.115;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1124,104,0
chr2	153378652	rs4664593	G	A	237.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=2.584;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:254,21,0
chr2	153399594	rs2678301	G	A	632.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.19;ReadPosRankSum=0.00;SOR=2.948;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr2	153405594	rs1155779	G	A	4308.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DB;DP=83;ExcessHet=3.9794;FS=0.473;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.974;SOR=0.642;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,30:83:99:629,0,1376
chr2	153405684	rs12468789	A	G	308.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e+00;DB;DP=38;ExcessHet=3.0103;FS=1.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.11;ReadPosRankSum=-1.453e+00;SOR=0.362;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:317,0,736
chr2	153415114	rs11692343	G	C	67.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=2.303;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	153415170	rs6705427	A	C	88.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.343;DB;DP=20;ExcessHet=3.0103;FS=2.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.41;ReadPosRankSum=-4.750e-01;SOR=1.547;VQSLOD=22.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:97:97,0,475
chr2	153415229	.	AT	A,ATT	2225.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.591;DP=56;ExcessHet=3.9794;FS=0.783;MQ=59.77;MQRankSum=0.00;QD=13.82;ReadPosRankSum=-1.200e-01;SOR=0.871;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:8,20,20:56:99:1103,351,1026,658,0,769
chr2	153415376	rs6434098	T	G	4189.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=153;ExcessHet=3.9794;FS=2.324;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.170;SOR=0.579;VQSLOD=6.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,75:153:99:1788,0,1897
chr2	153415588	rs6434099	T	C	614.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=1.47;SOR=1.302;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:262,0,179
chr2	153417219	rs17399913	T	C	102.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=1.65;SOR=1.022;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:111,0,66
chr2	153417325	rs6713836	A	G	1164.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.804;SOR=0.731;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:614,0,645
chr2	153431964	rs56101947	CAA	C	154.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.952;SOR=0.892;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:163,0,126
chr2	153435288	rs12693407	G	A	1110.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=24;ExcessHet=1.5490;FS=4.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=-1.364e+00;SOR=1.695;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:371,0,413
chr2	153463984	rs10539716	TAC	T	2376.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.110e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.44;ReadPosRankSum=-1.077e+00;SOR=5.670;VQSLOD=0.864;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:153463984_TAC_T:722,60,0:153463984
chr2	153464021	rs2118376	A	G	321.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.121e+00;DB;DP=22;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;QD=14.61;ReadPosRankSum=-3.630e-01;SOR=0.138;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,10:22:99:0|1:153463984_TAC_T:329,0,428:153463984
chr2	153467862	rs10931191	C	A	358.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.00;SOR=1.371;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr2	153471255	rs70974877	T	TCAAAA	102.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.62;ReadPosRankSum=0.792;SOR=0.892;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:99:111,0,304
chr2	153473435	rs7596408	G	A	350.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=1.40;SOR=0.481;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:183,0,187
chr2	153473492	rs13417781	G	A	363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=27;ExcessHet=3.0103;FS=10.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-1.172e+00;SOR=2.925;VQSLOD=13.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:372,0,345
chr2	153473521	rs12693415	A	C	455.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-7.460e-01;SOR=0.818;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:464,0,575
chr2	153473794	rs2304556	T	G	328.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=-2.570e-01;SOR=1.329;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:337,0,171
chr2	153475253	rs13413144	A	T	421.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.233;SOR=0.646;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:69:0|1:153475253_A_T:204,0,69:153475253
chr2	153475258	rs62179599	T	C	192.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-1.350e-01;SOR=0.105;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:153475253_A_T:201,0,111:153475253
chr2	153475263	rs10617862	GTA	G	102.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.135;SOR=2.303;VQSLOD=6.45;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:1|0:153475253_A_T:111,0,201:153475253
chr2	153475804	rs16831451	C	T	142.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:28:151,0,28
chr2	153475840	rs56191709	C	T	112.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=-5.240e-01;SOR=0.836;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,104
chr2	153476066	rs3080632	G	GCCA	1465.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=59.63;POSITIVE_TRAIN_SITE;QD=33.95;SOR=1.949;VQSLOD=5.93;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,13:13:44:538,44,0
chr2	153478931	rs7609122	T	C	2635.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.69;SOR=4.712;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:710,60,0
chr2	153479326	.	G	GT	41.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.17;ReadPosRankSum=-8.540e-01;SOR=1.270;VQSLOD=5.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:50:50,0,85
chr2	153481943	rs2346532	T	C	4776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=2.237;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:919,87,0
chr2	153483281	rs9989874	A	C	562.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=0.193;SOR=1.714;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:359,0,133
chr2	153492910	rs1561267	G	T	3614.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=49;ExcessHet=3.9794;FS=3.228;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-5.260e-01;SOR=1.021;VQSLOD=7.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,22:49:99:550,0,650
chr2	153497168	rs1465818	C	T	2977.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=2.330;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:653,60,0
chr2	153504552	rs12693429	G	A	1207.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=47;ExcessHet=3.9794;FS=1.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.084;SOR=0.888;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:539,0,843
chr2	153514583	rs6713779	G	C	2896.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=-4.720e-01;SOR=0.724;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:415,0,387
chr2	153514689	rs6746079	C	T	651.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.588e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=0.250;SOR=1.609;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	153516018	rs144650827	AT	A	69.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.37;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:17:78,0,17
chr2	153519524	rs1036526	A	G	4399.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=50;ExcessHet=3.9794;FS=2.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=1.99;SOR=0.496;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,31:50:99:877,0,457
chr2	153519768	rs16831529	C	T	117.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=10;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-2.345e+00;SOR=0.078;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:126,0,201
chr2	153520782	rs3762507	A	G	2511.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=2.07;SOR=0.749;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:525,0,520
chr2	153520819	rs3762506	C	A	1888.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.47;ReadPosRankSum=0.656;SOR=1.240;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:418,0,148
chr2	153525971	rs6727279	A	C	527.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.9794;FS=2.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=0.936;SOR=1.508;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:130,0,154
chr2	153527017	rs2118377	C	T	1250.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=2.17;SOR=1.480;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:265,0,184
chr2	153529361	rs2304559	T	C	1377.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=1.94;SOR=1.302;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:199,0,168
chr2	153533260	rs11544718	G	A	1283.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=46;ExcessHet=3.9794;FS=3.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.179;SOR=0.586;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,19:46:99:507,0,736
chr2	153534139	rs1437676	G	A	408.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.90;SOR=4.804;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	153535670	rs10166987	C	T	5647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=0.812;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1489,131,0
chr2	153549814	rs10172024	G	C	2167.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066e+00;DB;DP=28;ExcessHet=3.9794;FS=2.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=-2.830e-01;SOR=1.019;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:300,0,504
chr2	153572438	rs2346548	C	T	2537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.84;SOR=2.463;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:607,57,0
chr2	153573408	rs4664604	C	G	1412.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=27;ExcessHet=3.9794;FS=1.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=-1.310e+00;SOR=0.505;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:444,0,265
chr2	153573528	rs4664605	C	T	3778.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=45;ExcessHet=3.9794;FS=7.785;MQ=59.99;MQRankSum=1.16;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.35;ReadPosRankSum=0.218;SOR=1.294;VQSLOD=0.534;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,25:45:99:700,0,449
chr2	153574092	rs2293680	G	C	476.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=0.704;SOR=0.627;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:485,0,476
chr2	153576264	.	GA	G	959.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=0.00;SOR=4.332;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:0:0|1:153576264_GA_G:249,0,0:153576264
chr2	153576279	rs7594309	A	C	1071.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=1.34;NEGATIVE_TRAIN_SITE;QD=29.78;ReadPosRankSum=0.660;SOR=1.455;VQSLOD=-1.043e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,9:11:18:0|1:153576264_GA_G:331,0,18:153576264
chr2	153577013	rs9646744	G	A	6715.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e-01;DB;DP=80;ExcessHet=3.9794;FS=2.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=-2.420e-01;SOR=0.871;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,36:80:99:935,0,1136
chr2	154996676	rs13428363	G	C	77.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=0.241;SOR=0.283;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:85:85,0,237
chr2	155098390	rs2059335	G	C	805.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=6.184;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr2	155099537	rs12477393	T	G	769.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=0.618;SOR=1.244;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:88:88,0,264
chr2	155265623	rs1405936	G	A	3484.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DB;DP=39;ExcessHet=3.9794;FS=5.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=1.14;SOR=0.339;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,24:39:99:626,0,372
chr2	155295375	rs77654728	G	A	358.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=-1.063e+00;SOR=0.793;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,10:19:99:0|1:155295375_G_A:367,0,293:155295375
chr2	155295380	rs697647	T	C	2380.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=8.051;VQSLOD=24.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:155295375_G_A:706,48,0:155295375
chr2	155306752	rs707079	A	T	373.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.93;ReadPosRankSum=0.967;SOR=3.442;VQSLOD=18.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	155306885	rs697648	C	T	3292.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=2.016;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:950,84,0
chr2	155711357	rs17642086	T	C	1474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525e+00;DB;DP=105;ExcessHet=3.0103;FS=0.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.244;SOR=0.569;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,62:105:99:1483,0,1010
chr2	157183211	rs35479735	TC	T	6452.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.171;DB;DP=46;ExcessHet=3.0103;FS=5.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.18;ReadPosRankSum=-1.306e+00;SOR=1.799;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1642,138,0
chr2	157183635	rs834834	C	T	1270.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.59;SOR=2.899;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:266,24,0
chr2	157189011	rs834836	G	C	3892.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=0.782;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:781,72,0
chr2	157352418	rs297581	A	G	428.34	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.81;ReadPosRankSum=-8.870e-01;SOR=0.477;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr2	157358052	rs297588	A	G	649.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.95;DB;DP=7;ExcessHet=3.0103;FS=12.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.66;ReadPosRankSum=0.364;SOR=4.073;VQSLOD=12.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:267,21,0
chr2	157406249	rs2116665	G	A	18382.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=263;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=1.85;SOR=0.739;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,263:263:99:8253,787,0
chr2	157406296	rs2116664	A	C	13779.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=167;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=-5.480e-01;SOR=0.730;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,167:167:99:5597,501,0
chr2	157425502	rs36082652	C	CT	1146.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432e+00;DB;DP=34;ExcessHet=6.9897;FS=1.019;MQ=60.00;MQRankSum=0.00;QD=13.82;ReadPosRankSum=-4.300e-02;SOR=0.583;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,15:34:98:356,0,98
chr2	157425801	rs67602053	A	G	388.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=19;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=-7.200e-01;SOR=1.473;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:397,0,154
chr2	157425972	rs17266469	G	A	618.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DB;DP=67;ExcessHet=3.0103;FS=2.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=-6.280e-01;SOR=0.970;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,24:67:99:627,0,1174
chr2	157426114	rs147508905	ACTGGCAGCAAT	A	695.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.07;ReadPosRankSum=-1.013e+00;SOR=0.922;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,18:33:99:704,0,1832
chr2	157427593	rs1469652	T	C	2764.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=1.609;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:951,96,0
chr2	157427837	rs1469651	C	A	2678.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.962;DB;DP=41;ExcessHet=3.0103;FS=2.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=1.31;SOR=1.254;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1242,123,0
chr2	157427850	rs1469650	G	A	2228.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.547;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=0.722;SOR=0.938;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1086,99,0
chr2	158114498	.	T	TCTGCTGCTG	327.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=40;ExcessHet=3.0103;FS=3.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=0.413;SOR=1.445;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,10:40:99:336,0,2656
chr2	158115129	rs61748237	A	T	1059.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=83;ExcessHet=3.0103;FS=3.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-3.370e-01;SOR=0.431;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1068,0,1099
chr2	158140806	rs6759356	G	C	1187.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.140e-01;DB;DP=98;ExcessHet=3.0103;FS=2.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-2.030e-01;SOR=0.976;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,46:98:99:1196,0,1408
chr2	158141071	rs714648	C	T	324.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=19;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-5.370e-01;SOR=1.781;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:333,0,184
chr2	158141092	rs714649	G	T	174.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.880;SOR=2.636;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:183,0,146
chr2	158152046	rs57727429	GA	G	423.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.42;ReadPosRankSum=-6.190e-01;SOR=2.030;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:158152046_GA_G:250,27,0:158152046
chr2	158157361	rs3214040	C	T	6755.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=100;ExcessHet=3.9794;FS=4.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.604;SOR=0.811;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,61:100:99:1637,0,868
chr2	158157423	rs146330897	G	A	667.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;DB;DP=75;ExcessHet=3.0103;FS=6.279;MQ=60.00;MQRankSum=0.00;QD=8.90;ReadPosRankSum=0.142;SOR=1.362;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,28:75:99:676,0,1291
chr2	158162475	rs3214039	C	T	1628.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135e+00;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=-4.950e-01;SOR=0.804;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:312,0,460
chr2	158162521	rs3816595	T	G	878.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=13;ExcessHet=3.9794;FS=4.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=1.49;SOR=2.683;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:255,0,201
chr2	158165004	rs6728956	C	T	703.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=2.03;SOR=1.688;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:136,0,184
chr2	158180784	.	CA	C	367.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620e-01;DP=17;ExcessHet=6.9897;FS=1.913;MQ=59.82;MQRankSum=0.00;QD=4.60;ReadPosRankSum=0.567;SOR=0.485;VQSLOD=5.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:102,0,158
chr2	158275111	.	T	TA	643.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.390e-01;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.111;SOR=0.664;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:13:31:169,0,31
chr2	158283710	rs155614	A	G	717.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;DB;DP=3;ExcessHet=3.0103;FS=3.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.20;ReadPosRankSum=1.61;SOR=2.303;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	158284056	rs155613	C	T	1696.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.05;SOR=6.184;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:433,36,0
chr2	158291188	rs11904180	A	C	2346.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.860e-01;DB;DP=35;ExcessHet=3.0103;FS=1.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.408;SOR=0.547;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1175,105,0
chr2	158390652	.	CT	C	56.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.78;MQRankSum=0.00;QD=1.89;ReadPosRankSum=0.211;SOR=0.784;VQSLOD=5.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:27:27,0,296
chr2	158395079	rs7576514	C	G	3766.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;DB;DP=67;ExcessHet=3.9794;FS=2.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=0.365;SOR=0.507;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,31:67:99:842,0,997
chr2	158400806	rs10432555	C	A	285.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=8;ExcessHet=4.7712;FS=3.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.842;SOR=0.105;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:52:226,0,52
chr2	158400908	rs6728987	C	T	1897.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=33;ExcessHet=6.9897;FS=1.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-1.218e+00;SOR=0.966;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,21:33:99:692,0,298
chr2	158401137	rs10432556	T	C	1975.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488e+00;DB;DP=39;ExcessHet=6.9897;FS=1.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.195;SOR=0.961;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,23:39:99:634,0,498
chr2	158484770	rs4664893	T	A	1737.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.13;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.264;SOR=0.705;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1216,116,0
chr2	158485075	rs114245489	G	T	2492.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.513e+00;DB;DP=330;ExcessHet=3.0103;FS=1.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.55;ReadPosRankSum=1.38;SOR=0.805;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:199,131:330:99:2501,0,4994
chr2	158626980	rs1146031	C	T	8121.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=0.762;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3003,309,0
chr2	158636910	rs2227861	G	A	9112.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DB;DP=114;ExcessHet=3.0103;FS=1.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=-2.610e-01;SOR=0.575;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,53:114:99:1326,0,1582
chr2	158637137	rs1866885	A	G	3870.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=51;ExcessHet=3.0103;FS=1.803;MQ=59.99;MQRankSum=0.00;QD=22.90;ReadPosRankSum=-5.100e-02;SOR=0.493;VQSLOD=5.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:621,0,600
chr2	158637445	rs6708430	A	C	351.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.74;SOR=4.615;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	158655883	rs111834201	C	CAA	1703.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=0.158;SOR=0.693;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:83:225,0,83
chr2	159028800	rs2222390	A	G	3278.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=2.303;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:723,66,0
chr2	159035344	rs3836162	A	AT	1100.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460e-01;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.40;ReadPosRankSum=-5.990e-01;SOR=0.675;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,20:56:99:410,0,903
chr2	159077019	rs958671	A	C	5655.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=1.54;SOR=0.965;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1352,129,0
chr2	159077407	rs11896761	G	A	213.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=0.524;SOR=2.419;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	159166069	rs7559772	T	C	6438.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=1.872;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1770,165,0
chr2	159312733	rs1111212	C	T	6793.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.770e-01;DB;DP=88;ExcessHet=3.0103;FS=6.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=-1.753e+00;SOR=0.356;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2898,264,0
chr2	159434492	rs2356188	G	A	3787.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=26;ExcessHet=3.0103;FS=4.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=-5.950e-01;SOR=1.949;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:81:1|1:159434492_G_A:1184,81,0:159434492
chr2	159434500	rs2356189	A	G	2913.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.06;DB;DP=30;ExcessHet=3.9794;FS=3.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.02;ReadPosRankSum=1.57;SOR=1.248;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:90:1|1:159434492_G_A:1314,90,0:159434492
chr2	159459863	rs2051947	A	G	878.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.58;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=2.44;SOR=1.751;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr2	159487785	rs10933495	A	C	2172.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DB;DP=42;ExcessHet=3.9794;FS=0.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=1.27;SOR=0.817;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1195,126,0
chr2	159490456	rs917242	C	A	182.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=3.611;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr2	159498850	rs2253652	A	G	202.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-1.282e+00;SOR=1.085;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr2	159498940	rs2253537	A	T	1359.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.98;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=0.453;SOR=1.697;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:558,42,0
chr2	159520085	rs3771679	G	C	2652.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.050e-01;DB;DP=20;ExcessHet=3.0103;FS=2.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.35;ReadPosRankSum=0.039;SOR=0.387;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:682,60,0
chr2	159522879	rs2248854	C	G	1153.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.08;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.18;ReadPosRankSum=-4.660e-01;SOR=0.900;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
chr2	159525930	rs2158831	C	T	2836.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.113e+00;DB;DP=39;ExcessHet=3.0103;FS=4.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.18;ReadPosRankSum=-1.339e+00;SOR=0.223;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1434,117,0
chr2	159530651	rs2711034	A	T	2648.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=-6.790e-01;SOR=0.655;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1054,84,0
chr2	159534863	rs2356505	A	G	2695.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.391e+00;DB;DP=32;ExcessHet=3.0103;FS=4.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.79;ReadPosRankSum=-7.590e-01;SOR=2.882;VQSLOD=19.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1168,96,0
chr2	159534874	rs2356506	C	T	3456.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.610e-01;DB;DP=37;ExcessHet=3.0103;FS=4.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=0.109;SOR=2.854;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1466,111,0
chr2	159534889	rs2711040	C	T	3086.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.50;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=0.913;SOR=0.846;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,16:45:99:553,0,1071
chr2	159651734	rs925781	A	G	1492.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807e+00;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.14;ReadPosRankSum=1.53;SOR=1.051;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:501,0,564
chr2	159651973	rs1356173	G	A	1898.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.790e-01;DB;DP=172;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-1.572e+00;SOR=0.735;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,75:172:99:1907,0,2583
chr2	159652231	rs2280184	G	T	1351.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=0.695;SOR=1.387;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:353,0,194
chr2	159660645	rs11297084	TA	T	404.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.99;ReadPosRankSum=-5.240e-01;SOR=4.047;VQSLOD=4.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
chr2	159661077	rs2271663	C	T	1420.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=13;ExcessHet=3.9794;FS=5.378;MQ=59.57;MQRankSum=0.869;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.57;ReadPosRankSum=1.92;SOR=3.417;VQSLOD=-4.218e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:298,0,181
chr2	159663599	rs9869	T	C	3446.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=55;ExcessHet=3.9794;FS=3.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.156;SOR=0.452;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:838,0,496
chr2	159663616	rs12535	G	A	463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DB;DP=45;ExcessHet=3.0103;FS=6.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=0.414;SOR=1.609;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,19:45:99:472,0,673
chr2	159664171	rs11690492	T	C	1002.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;DB;DP=34;ExcessHet=6.9897;FS=3.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-4.150e-01;SOR=1.194;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,22:34:99:588,0,262
chr2	159672251	rs61740880	C	T	1299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-02;DB;DP=104;ExcessHet=3.0103;FS=3.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=-1.099e+00;SOR=0.902;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,53:104:99:1308,0,1225
chr2	159672442	rs10016	G	A	1534.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.664e+00;DB;DP=16;ExcessHet=3.9794;FS=2.149;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.154;SOR=1.503;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:230,0,320
chr2	159682761	rs5835723	C	CT	1196.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=14;ExcessHet=3.9794;FS=2.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=-2.330e-01;SOR=1.802;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:281,0,197
chr2	159683021	rs12185615	A	T	67.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=56.89;QD=33.64;SOR=0.693;VQSLOD=1.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:11:79,11,0
chr2	159710189	rs9750235	T	A	1121.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-01;DB;DP=32;ExcessHet=3.9794;FS=0.963;MQ=55.09;MQRankSum=-1.237e+00;NEGATIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.661;SOR=0.545;VQSLOD=-2.905e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:383,0,475
chr2	159719127	rs145953089	T	C	1598.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DB;DP=54;ExcessHet=3.9794;FS=2.378;MQ=45.29;MQRankSum=1.57;QD=12.89;ReadPosRankSum=0.718;SOR=0.482;VQSLOD=-4.116e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:759,0,866
chr2	159731167	rs111572461	A	G	277.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=55.63;MQRankSum=1.29;NEGATIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.01;SOR=0.976;VQSLOD=-2.769e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:113,0,137
chr2	159731466	rs10186922	A	G	6777.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.254;DB;DP=89;ExcessHet=3.0103;FS=6.012;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=1.57;SOR=0.629;VQSLOD=6.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2680,227,0
chr2	159731728	rs62185466	A	G	713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=44;ExcessHet=3.0103;FS=1.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=1.40;SOR=0.512;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:722,0,562
chr2	159731808	rs13420835	G	A	2711.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.089;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.13;ReadPosRankSum=-5.800e-02;SOR=0.701;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1248,110,0
chr2	159954175	rs34588551	C	T	3502.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256e+00;DB;DP=45;ExcessHet=3.9794;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-3.240e-01;SOR=0.761;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:575,0,628
chr2	159954420	rs13414916	C	T	239.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.982;SOR=0.859;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:248,0,250
chr2	159954568	rs10171327	A	T	211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-5.240e-01;SOR=1.863;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	160005515	rs7583577	G	C	375.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=4.615;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	160005599	.	CG	C	172.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.61;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:58:181,0,58
chr2	160006143	rs7586743	C	T	417.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=0.00;SOR=0.784;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:58:58,0,242
chr2	160019863	rs12466551	A	G	8094.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=31.62;SOR=0.741;VQSLOD=4.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2632,270,0
chr2	160027587	rs11403782	G	GC	2152.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=3.767;VQSLOD=6.27;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,21:21:63:785,63,0
chr2	160033174	rs759034	A	G	1788.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=6.184;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:378,27,0
chr2	160034919	rs4665031	A	G	2148.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.79;SOR=7.824;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:830,57,0
chr2	160035195	rs12988603	C	T	11602.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723e+00;DB;DP=189;ExcessHet=3.9794;FS=0.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.109;SOR=0.634;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,90:189:99:2094,0,2727
chr2	160035207	rs6748288	T	C	19448.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=188;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=0.852;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,188:188:99:5970,564,0
chr2	160042198	rs17494014	G	A	1918.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.04;SOR=1.810;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:271,0,287
chr2	160042430	rs13389867	G	A	2442.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=179;ExcessHet=3.0103;FS=2.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=-8.880e-01;SOR=0.916;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,98:179:99:2451,0,2013
chr2	160055448	rs13430891	T	A	527.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500e-02;DB;DP=58;ExcessHet=3.0103;FS=2.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=-1.600e-01;SOR=1.136;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,22:58:99:536,0,965
chr2	160073895	rs4665042	G	C	2831.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=-5.590e-01;SOR=0.808;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:443,0,429
chr2	160075886	rs146371641	G	GC	7556.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.703e+00;DB;DP=118;ExcessHet=3.9794;FS=5.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=0.448;SOR=0.471;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:55,63:118:99:1753,0,1541
chr2	160076026	rs2303334	C	G	3772.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.084e+00;DB;DP=50;ExcessHet=3.9794;FS=0.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-4.580e-01;SOR=0.604;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,27:50:99:780,0,679
chr2	160076077	rs2303335	T	A	3486.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=61;ExcessHet=3.9794;FS=3.036;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=1.40;SOR=0.484;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,33:61:99:893,0,668
chr2	160082354	rs12692544	C	T	13751.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=29.03;SOR=1.415;VQSLOD=3.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3824,327,0
chr2	160082364	rs34344829	A	G	7610.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=101;ExcessHet=3.9794;FS=3.313;MQ=59.99;MQRankSum=0.00;QD=23.71;ReadPosRankSum=-9.770e-01;SOR=0.901;VQSLOD=5.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,37:101:99:955,0,1578
chr2	160082384	rs13419975	T	A	4643.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;DB;DP=87;ExcessHet=3.9794;FS=2.992;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=-4.010e-01;SOR=0.923;VQSLOD=6.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,29:87:99:691,0,1502
chr2	160082502	rs9678339	G	A	853.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=11;ExcessHet=3.9794;FS=3.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=1.53;SOR=0.151;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:145,0,183
chr2	160082545	rs9678325	C	T	341.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-3.190e-01;SOR=0.368;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:72,0,26
chr2	160084224	rs2042494	G	A	1576.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.64;SOR=3.816;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:401,30,0
chr2	160084263	rs2042495	A	G	2609.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=1.854;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:851,81,0
chr2	160084473	rs2288110	A	C	810.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=1.10;SOR=0.783;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:530,0,323
chr2	160084534	rs2288111	A	G	1307.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.41;SOR=2.554;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:675,63,0
chr2	160085852	rs4664275	T	C	37.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.57;SOR=0.693;VQSLOD=13.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	160086653	rs4664276	C	T	7630.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=212;ExcessHet=3.9794;FS=4.968;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=0.074;SOR=0.498;VQSLOD=7.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:120,92:212:99:0|1:160086653_C_T:3598,0,5485:160086653
chr2	160086654	rs55738533	A	G	7630.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.38;DB;DP=217;ExcessHet=3.9794;FS=5.868;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.329;SOR=0.472;VQSLOD=7.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:120,97:217:99:0|1:160086653_C_T:3598,0,5485:160086653
chr2	160086692	rs3821296	A	G	4934.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DB;DP=214;ExcessHet=3.9794;FS=3.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.172;SOR=0.595;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,98:214:99:2425,0,3243
chr2	160087535	rs3821301	T	G	6165.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=1.955;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1808,168,0
chr2	160092387	rs34183718	GT	G	290.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.00;SOR=2.670;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:52:52,0,52
chr2	160112881	rs7591849	G	T	5812.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=76;ExcessHet=3.9794;FS=4.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=-8.950e-01;SOR=1.001;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,40:76:99:989,0,839
chr2	160114437	rs3213715	G	A	3311.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=1.73;SOR=0.699;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:867,0,621
chr2	160116281	rs4665052	A	G	5419.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DB;DP=92;ExcessHet=3.9794;FS=5.904;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=0.888;SOR=0.443;VQSLOD=7.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,54:92:99:1249,0,849
chr2	160127905	rs174267	A	G	159.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=3.611;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
chr2	160128520	rs7602019	A	G	172.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=-1.150e+00;SOR=2.303;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:103,0,29
chr2	160132196	rs35620648	A	AC	2863.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.83;SOR=2.069;VQSLOD=3.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,32:32:96:962,96,0
chr2	160136337	rs174264	G	A	2514.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.58;SOR=1.055;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:911,105,0
chr2	160176943	rs174229	A	C	4206.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.42;SOR=2.113;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1288,117,0
chr2	160181543	rs67500828	TTA	T	70.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.63;SOR=2.303;VQSLOD=5.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	160182074	rs440241	T	A	614.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.241;SOR=0.446;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,138
chr2	160193370	rs2287634	T	A	826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.955;SOR=0.556;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:86:86,0,244
chr2	160203934	rs965163	A	C,T	2693.67	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=4.461;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,9,15:24:99:731,467,441,265,0,221
chr2	160231108	rs6742788	A	G	2012.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=23;ExcessHet=6.9897;FS=1.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=0.022;SOR=0.914;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:283,0,326
chr2	160239378	rs2302927	A	G	1375.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=-1.910e-01;SOR=0.774;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:465,0,368
chr2	160241936	rs1469015	A	G	526.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=0.652;SOR=0.922;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:107,0,140
chr2	160241998	rs5835743	C	CTT	97.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.43;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:27:103,0,27
chr2	160243183	rs918351	T	A	791.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=15;ExcessHet=6.9897;FS=2.157;MQ=60.00;MQRankSum=0.00;QD=18.00;ReadPosRankSum=0.630;SOR=1.609;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,9:15:99:0|1:160243183_T_A:360,0,394:160243183
chr2	160243184	rs918350	A	T	791.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=15;ExcessHet=6.9897;FS=2.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.00;ReadPosRankSum=0.400;SOR=1.609;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,9:15:99:0|1:160243183_T_A:360,0,394:160243183
chr2	160255665	rs10682140	T	TAA	654.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=5.549;VQSLOD=6.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:178,12,0
chr2	160255682	rs34066625	A	C	190.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:67,0,34
chr2	160257398	rs6432530	A	T	141.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.00;SOR=3.611;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr2	160261387	rs11551108	T	C	213.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=-1.296e+00;SOR=0.976;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:222,0,573
chr2	160261729	rs74694096	AC	A	1228.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.06;SOR=4.804;VQSLOD=6.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:492,39,0
chr2	160285575	rs12473781	C	T	699.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DB;DP=19;ExcessHet=6.9897;FS=1.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-1.396e+00;SOR=0.986;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,3:19:72:72,0,438
chr2	160285660	rs10754963	T	A	1780.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.810e-01;DB;DP=52;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.580;SOR=0.671;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,19:52:99:364,0,825
chr2	160295297	rs2302923	C	A	1094.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614e+00;DB;DP=21;ExcessHet=6.9897;FS=2.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.582;SOR=0.349;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:364,0,251
chr2	160304741	rs12470533	A	T	1015.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=15;ExcessHet=6.9897;FS=9.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.277;SOR=1.981;VQSLOD=18.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:166,0,222
chr2	160335315	rs72947590	T	C	414.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.260e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.40;ReadPosRankSum=0.888;SOR=0.693;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:252,18,0
chr2	160602258	rs59109898	A	G	1310.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=20;ExcessHet=3.9794;FS=0.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=1.46;SOR=0.569;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:638,59,0
chr2	160604452	rs11555185	C	T	4055.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.298;DB;DP=68;ExcessHet=3.9794;FS=2.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=-8.410e-01;SOR=0.528;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,67:68:99:2079,159,0
chr2	160605268	rs1365803	T	C	9060.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=0.851;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2537,240,0
chr2	160605392	.	A	C	513.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.361e+00;DP=53;ExcessHet=3.0103;FS=1.283;MQ=60.00;MQRankSum=0.00;QD=9.68;ReadPosRankSum=2.20;SOR=1.047;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,20:53:99:522,0,1021
chr2	160605489	rs10929950	C	T	1330.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.68;SOR=4.615;VQSLOD=19.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:160605489_C_T:568,42,0:160605489
chr2	160605498	rs4665112	T	C	1204.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=11;ExcessHet=3.9794;FS=2.940;MQ=60.00;MQRankSum=0.00;QD=30.90;ReadPosRankSum=-4.970e-01;SOR=1.981;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:160605489_C_T:484,33,0:160605489
chr2	160619233	rs7569562	T	G	1218.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.67;SOR=5.421;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:424,33,0
chr2	160621354	rs5835760	G	GT	646.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.137;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.00;SOR=2.242;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:188,21,0
chr2	160628209	rs3836181	CTT	C	541.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.86;ReadPosRankSum=1.15;SOR=1.292;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr2	160634240	rs35481084	G	A	603.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.35;SOR=5.549;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr2	160636330	rs34695240	G	GTCT	537.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.447;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.21;ReadPosRankSum=-2.850e-01;SOR=0.560;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:18:260,18,0
chr2	160637267	rs2303552	C	A	1330.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=12;ExcessHet=3.9794;FS=1.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.231;SOR=0.446;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:503,36,0
chr2	160637324	rs2303551	A	G	5196.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.68;SOR=1.878;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1372,131,0
chr2	160640151	rs3815876	C	T	729.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.63;POSITIVE_TRAIN_SITE;QD=30.90;SOR=5.892;VQSLOD=7.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr2	160654524	rs2556106	G	T	967.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=-6.740e-01;SOR=0.610;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:447,45,0
chr2	160663435	rs12463589	T	C	2113.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=-2.390e-01;SOR=0.763;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1212,102,0
chr2	160663678	rs7566887	T	C	3149.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.810e-01;DB;DP=51;ExcessHet=3.9794;FS=2.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=-2.380e-01;SOR=0.991;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1533,112,0
chr2	160664697	rs1346327	A	G	225.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=1;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.24;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:44,3,0
chr2	160665278	rs1549577	C	T	243.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr2	160672235	rs7577691	T	A	370.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622e+00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.50;ReadPosRankSum=2.82;SOR=1.022;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	160673526	rs2059696	A	G	3581.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.950e-01;DB;DP=59;ExcessHet=3.9794;FS=1.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=1.62;SOR=0.847;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1741,137,0
chr2	160676427	rs12692566	C	A	4040.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=37;ExcessHet=3.0103;FS=5.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.33;ReadPosRankSum=0.609;SOR=1.725;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,36:37:99:1083,100,0
chr2	160676445	rs36120198	A	AT	2830.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.80;SOR=2.610;VQSLOD=4.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:744,72,0
chr2	160688351	rs6755783	C	T	2536.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.543e+00;DB;DP=30;ExcessHet=3.9794;FS=3.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=0.779;SOR=0.363;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:89:1019,89,0
chr2	160691829	rs2303547	C	T	103.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.52;SOR=2.833;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr2	160697636	rs11690117	G	T	812.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=6.184;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr2	160698618	rs41265131	G	A	421.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=0.992;SOR=2.448;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr2	160698700	rs41265133	A	C	1379.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.76;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.64;ReadPosRankSum=0.558;SOR=1.160;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:758,60,0
chr2	160708645	rs2162500	C	G	3096.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=67;ExcessHet=1.5490;FS=2.149;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=-8.950e-01;SOR=1.075;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2220,201,0
chr2	160708923	rs36091128	GT	G	1146.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.541e+00;DB;DP=20;ExcessHet=1.5490;FS=2.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.67;ReadPosRankSum=0.851;SOR=0.347;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:160708923_GT_G:717,60,0:160708923
chr2	160708933	rs72158678	GT	G	805.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.270e-01;DB;DP=12;ExcessHet=6.9897;FS=2.847;MQ=59.97;MQRankSum=0.00;QD=16.12;ReadPosRankSum=-1.780e-01;SOR=0.223;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,10:12:17:0|1:160708923_GT_G:212,0,17:160708923
chr2	160710922	rs2729705	T	C	2392.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.428e+00;DB;DP=57;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=-3.080e-01;SOR=0.749;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1806,171,0
chr2	160711248	rs975491	T	C	2412.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.46;SOR=1.292;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:754,60,0
chr2	160711556	rs975490	T	G	4179.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=2.624;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:160711556_T_G:1331,111,0:160711556
chr2	160729134	rs1397705	A	C	3738.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.99;SOR=2.303;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:979,84,0
chr2	160729239	rs41264215	A	G	220.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.49;ReadPosRankSum=0.319;SOR=2.584;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	160734668	rs17828159	T	C	306.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=2.303;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:321,30,0
chr2	160737495	rs2729712	A	C	3099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=5.004;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1120,87,0
chr2	160737560	rs2729711	G	T	6954.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=2.279;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2358,201,0
chr2	160738509	rs66496937	A	G	545.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.719e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=-2.280e-01;SOR=2.030;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:282,24,0
chr2	160760972	rs1397707	C	T	2042.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.80;DB;DP=32;ExcessHet=1.5490;FS=5.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.37;ReadPosRankSum=1.23;SOR=3.240;VQSLOD=17.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1357,96,0
chr2	160805993	rs6726923	C	G	1033.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=4.479;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr2	160807742	rs952184	A	T	3790.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=32.96;SOR=2.584;VQSLOD=4.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:891,78,0
chr2	160808075	rs3828323	C	T	1733.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.46;DB;DP=42;ExcessHet=1.5490;FS=2.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=-4.520e-01;SOR=0.480;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1285,126,0
chr2	160832858	rs145272880	A	AAC	137.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=1.98;SOR=1.022;VQSLOD=6.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:55:55,0,171
chr2	160833188	rs2715918	A	G	5145.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.280e+00;DB;DP=58;ExcessHet=3.0103;FS=4.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=-3.620e+00;SOR=0.372;VQSLOD=21.77;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1814,174,0
chr2	160834111	rs74335673	A	AT	343.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.327;SOR=1.012;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:137,0,203
chr2	160840370	rs5835784	AC	A	1104.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.296e+00;DB;DP=9;ExcessHet=3.0103;FS=2.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=-1.870e-01;SOR=0.325;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:310,27,0
chr2	160843433	rs6756949	T	G	260.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=-1.383e+00;SOR=0.473;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,74
chr2	160843623	rs6757188	T	C	2919.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079e+00;DB;DP=68;ExcessHet=1.5490;FS=1.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=0.267;SOR=0.533;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,29:68:99:614,0,975
chr2	160862094	rs2667004	G	A	353.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=2.26;SOR=1.022;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:139,0,188
chr2	160872982	rs34121457	A	AG	1363.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=37;ExcessHet=1.5490;FS=10.361;MQ=59.78;MQRankSum=0.00;QD=21.65;ReadPosRankSum=-7.200e-01;SOR=3.328;VQSLOD=1.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:29,8:37:99:240,0,1194
chr2	160872989	rs10563068	GGT	G	2159.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=37;ExcessHet=3.9794;FS=1.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=1.38;SOR=1.493;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,29:37:99:1194,0,241
chr2	160872991	rs34555459	T	G,*	1602.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=37;ExcessHet=3.0103;FS=10.807;MQ=59.79;NEGATIVE_TRAIN_SITE;QD=13.94;SOR=3.077;VQSLOD=-2.045e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,8,29:37:99:1616,1224,1194,334,0,241
chr2	160873021	rs2715939	G	A	5296.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.160e-01;DB;DP=65;ExcessHet=3.0103;FS=1.754;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=-1.000e-01;SOR=1.002;VQSLOD=6.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2286,195,0
chr2	160873270	rs2667040	A	G	5311.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=53;ExcessHet=3.0103;FS=5.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=-3.730e-01;SOR=1.418;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1901,159,0
chr2	160873294	rs3833577	T	TA	2841.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.680e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=-4.970e-01;SOR=0.833;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1081,111,0
chr2	160873397	rs1858295	T	C	1205.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=9;ExcessHet=3.0103;FS=7.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.04;ReadPosRankSum=-1.361e+00;SOR=2.649;VQSLOD=17.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:357,27,0
chr2	160876827	rs1511213	A	G	941.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.045;DB;DP=10;ExcessHet=3.0103;FS=5.213;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.38;ReadPosRankSum=0.589;SOR=3.334;VQSLOD=17.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
chr2	160885418	rs35771982	G	C	2752.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=92;ExcessHet=3.9794;FS=1.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.053e+00;SOR=0.578;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1017,0,1315
chr2	160885442	rs3749117	T	C	2652.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=101;ExcessHet=3.9794;FS=2.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-2.400e-02;SOR=0.616;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,45:101:99:1102,0,1345
chr2	160889673	rs2203053	G	A	2303.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.19;DB;DP=79;ExcessHet=3.9794;FS=3.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-3.200e-01;SOR=1.028;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,36:79:99:910,0,1193
chr2	160898882	rs1511222	T	C	474.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=5.283;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr2	160901517	rs4665143	A	G	6441.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.279;DB;DP=80;ExcessHet=3.0103;FS=4.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.87;ReadPosRankSum=0.133;SOR=0.400;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2606,239,0
chr2	160918601	rs17241973	A	G	320.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.620e-01;DB;DP=12;ExcessHet=3.9794;FS=5.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.20;SOR=0.120;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:98:98,0,286
chr2	160919020	rs3749119	C	T	1034.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.013;SOR=0.703;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,24:43:99:0|1:160919020_C_T:609,0,492:160919020
chr2	160919040	rs11285500	AC	A	2425.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=3.511;VQSLOD=6.58;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:75:1|1:160919020_C_T:945,75,0:160919020
chr2	160958145	rs7586751	T	C	450.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e+00;DB;DP=14;ExcessHet=3.9794;FS=1.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=0.852;SOR=1.106;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:153,0,321
chr2	160958349	rs201103445	GA	G	4882.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.233;SOR=0.512;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:38:99:968,112,0
chr2	160964057	rs13009231	G	T	2200.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.235e+00;DB;DP=26;ExcessHet=3.9794;FS=2.837;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=1.07;SOR=1.218;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:87:1|1:160964057_G_T:1261,87,0:160964057
chr2	160964059	rs13008664	A	G	2200.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.51;DB;DP=29;ExcessHet=3.9794;FS=1.279;MQ=60.00;MQRankSum=0.00;QD=26.52;ReadPosRankSum=1.04;SOR=1.123;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:87:1|1:160964057_G_T:1261,87,0:160964057
chr2	160964457	rs13010138	G	A	435.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.431;SOR=1.127;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:95:266,0,95
chr2	160968743	rs66470452	CA	C	2831.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.54;SOR=4.091;VQSLOD=6.27;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:637,51,0
chr2	160968838	rs11895959	G	T	277.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.31;SOR=4.174;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	160993800	rs35720878	A	T	3181.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=1.790;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:990,84,0
chr2	161028992	rs1037694	T	C	1519.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.506;DB;DP=32;ExcessHet=1.5490;FS=3.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=-9.660e-01;SOR=0.376;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1095,96,0
chr2	161029218	rs2305818	G	A	690.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=46;ExcessHet=3.9794;FS=1.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.70;ReadPosRankSum=-1.120e-01;SOR=0.475;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,13:46:99:333,0,886
chr2	161135000	rs1870106	G	C	155.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=3.258;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr2	161169828	rs10929977	C	G	2672.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.253e+00;DB;DP=64;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=-2.042e+00;SOR=0.703;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1979,192,0
chr2	161169956	rs10929978	G	C	1946.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.151e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.09;ReadPosRankSum=0.151;SOR=1.308;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:570,39,0
chr2	161174693	rs1430	C	T	596.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=12;ExcessHet=1.5490;FS=5.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.88;ReadPosRankSum=-5.520e-01;SOR=0.078;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:393,36,0
chr2	161797329	rs1524626	C	T	2611.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=22;ExcessHet=3.0103;FS=1.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.79;ReadPosRankSum=-5.560e-01;SOR=1.013;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:755,66,0
chr2	161797513	rs1524625	A	G	6620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=74;ExcessHet=3.0103;FS=0.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=1.17;SOR=0.634;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2369,222,0
chr2	162059817	rs1267075	G	A	1724.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.586e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.85;ReadPosRankSum=-8.450e-01;SOR=3.528;VQSLOD=17.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:517,42,0
chr2	162061565	rs1267050	C	G	493.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=-1.834e+00;SOR=0.990;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	162076496	rs3769970	C	T	229.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=1.28;SOR=1.022;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:129,0,65
chr2	162091765	rs3754971	G	A	741.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.354e+00;DB;DP=30;ExcessHet=3.9794;FS=9.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-5.300e-01;SOR=3.258;VQSLOD=13.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:413,0,551
chr2	162175290	rs1116165	T	C	6446.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=1.788;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2063,203,0
chr2	162224193	rs58162668	G	GT	5299.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.798e+00;DB;DP=50;ExcessHet=3.0103;FS=8.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.60;ReadPosRankSum=1.76;SOR=0.251;VQSLOD=4.48;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1587,150,0
chr2	162226315	rs12467117	G	T	704.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=1.07;SOR=0.743;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:311,0,211
chr2	162226336	rs10497214	G	T	1207.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.748e+00;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-8.300e-01;SOR=0.670;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:313,0,479
chr2	162226838	rs1116173	A	G	637.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=-1.981e+00;SOR=2.093;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr2	162242226	rs10193429	C	T	501.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=5.136;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr2	162247772	rs1921674	C	T	2315.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e-02;DB;DP=58;ExcessHet=6.9897;FS=7.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.434;SOR=0.354;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,23:58:99:461,0,824
chr2	162251856	rs74733151	C	G	475.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.585e+00;DB;DP=18;ExcessHet=3.9794;FS=2.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=2.49;SOR=0.274;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:226,0,301
chr2	162265189	rs12471336	G	T	585.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752e+00;DB;DP=17;ExcessHet=3.9794;FS=6.368;MQ=59.64;MQRankSum=0.956;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=0.882;SOR=0.049;VQSLOD=0.278;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:195,0,373
chr2	162274607	rs200480786	ATGTGTG	A	338.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.970e-01;DB;DP=9;ExcessHet=3.9794;FS=1.871;MQ=60.00;MQRankSum=0.00;QD=17.80;ReadPosRankSum=0.936;SOR=0.307;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:199,0,252
chr2	162280748	rs890076	G	A	7500.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888e+00;DB;DP=181;ExcessHet=3.9794;FS=1.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-9.500e-02;SOR=0.573;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,92:181:99:2273,0,2419
chr2	162359983	rs12620974	T	C	2691.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.250e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.92;ReadPosRankSum=-1.193e+00;SOR=0.732;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:162359983_T_C:1253,108,0:162359983
chr2	162363066	rs62187567	G	A	1998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=-8.000e-02;SOR=0.709;VQSLOD=6.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,24:45:99:652,0,544
chr2	162363930	rs139302533	G	A	3271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213e+00;DB;DP=88;ExcessHet=3.9794;FS=1.708;MQ=46.53;MQRankSum=0.069;QD=15.80;ReadPosRankSum=0.172;SOR=0.828;VQSLOD=-3.707e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,54:88:99:1652,0,1076
chr2	162566936	rs12476631	T	C	384.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.920e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=0.464;SOR=2.049;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:58:188,0,58
chr2	162566962	rs34284119	C	CTT	646.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.77;ReadPosRankSum=0.086;SOR=2.200;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:74:288,0,74
chr2	162627391	rs41267437	G	A	587.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-03;DB;DP=14;ExcessHet=3.9794;FS=1.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-1.250e-01;SOR=0.341;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:209,0,202
chr2	162696255	rs2084544	G	A	480.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.553;SOR=0.527;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:339,0,138
chr2	162696414	rs2084543	C	T	1152.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.448;SOR=0.700;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,20:54:99:497,0,792
chr2	162711682	rs41267441	A	C	1454.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.195;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:632,0,397
chr2	162729067	.	CAA	C	509.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.160;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=-1.335e+00;SOR=1.781;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
chr2	162738781	rs41267443	T	C	171.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=0.592;SOR=0.116;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:88:88,0,350
chr2	162757381	rs142912867	TAAAAC	T	1345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.150e-01;DB;DP=43;ExcessHet=3.9794;FS=1.969;MQ=60.00;MQRankSum=0.00;QD=15.29;ReadPosRankSum=-1.350e-01;SOR=0.436;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,17:43:99:636,0,1639
chr2	162761535	rs62188820	T	A	169.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-1.292e+00;SOR=0.693;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	162762034	rs72865241	G	A	419.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030e-01;DB;DP=10;ExcessHet=3.9794;FS=3.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.700;SOR=2.179;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:168,0,149
chr2	162762244	.	C	G	1292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DP=111;ExcessHet=3.0103;FS=4.616;MQ=60.00;MQRankSum=0.00;QD=11.64;ReadPosRankSum=1.85;SOR=0.557;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,48:111:99:1301,0,1684
chr2	162868566	.	CT	C	41.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;QD=5.16;ReadPosRankSum=0.619;SOR=0.020;VQSLOD=4.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,2:8:50:50,0,200
chr2	162873188	rs2970931	T	C	1125.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DB;DP=15;ExcessHet=3.9794;FS=3.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=0.735;SOR=1.634;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:162873188_T_C:505,45,0:162873188
chr2	162876828	rs35175377	CA	C	1465.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=59.56;MQRankSum=-7.620e-01;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.841;SOR=0.690;VQSLOD=1.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,19:45:99:479,0,526
chr2	162890175	rs1558957	T	C	1568.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.438;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.53;ReadPosRankSum=1.34;SOR=1.109;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:719,66,0
chr2	162891848	rs6432708	C	T	4247.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.890e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.824;SOR=0.676;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1706,153,0
chr2	162929709	rs1861978	T	G	434.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.00;SOR=0.540;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:162929709_T_G:117,0,180:162929709
chr2	162929732	rs35128070	G	A	586.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=8;ExcessHet=6.9897;FS=4.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=0.307;SOR=0.160;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:162929709_T_G:111,0,241:162929709
chr2	162929979	rs17574	A	G	2070.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=44;ExcessHet=6.9897;FS=2.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=1.33;SOR=0.501;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,28:44:99:685,0,363
chr2	162930286	rs3216773	CGCCAGGGTCCTAGCAGAA	C	2188.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=60;ExcessHet=3.9794;FS=9.431;MQ=60.00;MQRankSum=0.00;QD=16.70;ReadPosRankSum=3.25;SOR=1.844;VQSLOD=1.88;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:37,23:60:99:856,0,5990
chr2	162930725	rs13015258	T	G	631.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:241,18,0
chr2	163030336	rs3764917	T	C	1259.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.607e+00;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-7.200e-02;SOR=0.627;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,58:104:99:1268,0,1105
chr2	163051415	rs1468916	C	T	3346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=2.808;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1132,102,0
chr2	163078034	rs11413930	C	CA	131.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;DB;DP=14;ExcessHet=3.9794;FS=2.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.47;ReadPosRankSum=0.503;SOR=1.445;VQSLOD=6.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,3:14:38:38,0,264
chr2	163124051	rs1990760	C	T	2764.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-01;DB;DP=74;ExcessHet=6.9897;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-6.600e-02;SOR=0.767;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,44:74:99:1142,0,727
chr2	163128824	rs3747517	T	C	3699.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.910e-01;DB;DP=50;ExcessHet=3.0103;FS=1.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=1.34;SOR=0.507;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:578,0,659
chr2	163241144	rs34382064	C	A	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;DB;DP=32;ExcessHet=3.0103;FS=3.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=1.65;SOR=0.223;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:534,0,360
chr2	163694878	rs4667768	C	G	3165.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.912;DB;DP=55;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.98;ReadPosRankSum=3.28;SOR=0.712;VQSLOD=21.12;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,55:55:99:1|1:163694878_C_G:2437,166,0:163694878
chr2	163694886	rs4667769	G	A	2534.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.93;SOR=1.649;VQSLOD=19.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,59:59:99:1|1:163694878_C_G:2551,178,0:163694878
chr2	164466039	rs3833554	AT	A	3251.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=2.474;VQSLOD=3.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,30:30:90:859,90,0
chr2	164468414	rs2231898	T	C	742.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.710e-01;DB;DP=13;ExcessHet=1.5490;FS=10.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.132;SOR=0.046;VQSLOD=18.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:427,39,0
chr2	165349459	rs1051160	G	A	2234.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247e+00;DB;DP=13;ExcessHet=3.9794;FS=5.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.94;ReadPosRankSum=0.618;SOR=0.113;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:208,0,266
chr2	165351208	rs1451892	C	T	999.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.754e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=-1.155e+00;SOR=3.912;VQSLOD=15.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr2	165353712	rs8192673	C	T	7394.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=100;ExcessHet=3.0103;FS=3.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=-8.780e-01;SOR=0.936;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3070,299,0
chr2	165358672	rs4667463	A	G	2644.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=4.147;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:455,39,0
chr2	165424837	rs17437781	A	G	5062.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=0.4576;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=32.04;SOR=1.215;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2009,192,0
chr2	165476253	rs61748245	A	T	11369.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=133;ExcessHet=3.0103;FS=0.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=0.530;SOR=0.937;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4108,397,0
chr2	165477903	rs62173895	G	C	1725.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=19;ExcessHet=3.0103;FS=1.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=1.06;SOR=1.460;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:750,57,0
chr2	165698715	rs71028447	A	AG	1943.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.50;SOR=5.747;VQSLOD=5.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:641,54,0
chr2	165801359	rs10930141	C	T	1258.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.613e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-1.933e+00;SOR=0.386;VQSLOD=4.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:685,54,0
chr2	165809138	.	ATGTG	A,ATG	1380.71	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.270e-01;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=-1.335e+00;SOR=1.697;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,13:15:30:528,446,442,74,0,30
chr2	165811554	.	GAA	G	1468.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;DP=19;ExcessHet=3.9794;FS=3.126;MQ=60.00;MQRankSum=0.00;QD=19.85;ReadPosRankSum=0.183;SOR=0.333;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,18:19:41:621,41,0
chr2	166152111	rs353126	T	C	370.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=4.615;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	166152389	rs17183814	G	A	2382.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e-01;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=2.03;SOR=0.651;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,36:71:99:908,0,945
chr2	166153499	rs7593568	A	G	2225.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.24;ReadPosRankSum=-3.070e-01;SOR=0.777;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,22:34:99:643,0,383
chr2	166164215	rs3214603	CA	C	1604.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.969;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.730;SOR=0.711;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,26:27:50:743,50,0
chr2	166170073	rs13025009	A	G	1146.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=-1.890e-01;SOR=0.884;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:333,0,320
chr2	166170127	rs2121371	T	C	4107.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DB;DP=52;ExcessHet=3.9794;FS=1.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=1.20;SOR=0.850;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:718,0,632
chr2	166172317	rs1838846	A	G	2154.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.45;DB;DP=30;ExcessHet=3.9794;FS=5.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=0.517;SOR=1.281;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,11:30:99:0|1:166172317_A_G:369,0,501:166172317
chr2	166179357	rs1816918	C	A	448.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.06;ReadPosRankSum=-9.670e-01;SOR=2.985;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:71,0,33
chr2	166179650	rs1867864	C	T	6434.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.070e-01;DB;DP=108;ExcessHet=1.5490;FS=2.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=-3.780e-01;SOR=0.940;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,47:108:99:1160,0,1668
chr2	166183214	rs12993173	G	T	457.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=-9.670e-01;SOR=3.767;VQSLOD=16.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:72,0,36
chr2	166221569	rs3835933	TG	T	1203.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.520e-01;DB;DP=18;ExcessHet=3.9794;FS=5.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=1.11;SOR=0.259;VQSLOD=6.40;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,8:18:99:0|1:166221569_TG_T:175,0,382:166221569
chr2	166221582	rs3769951	C	T	742.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=21;ExcessHet=3.9794;FS=3.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-5.500e-01;SOR=1.223;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,12:21:99:1|0:166221569_TG_T:313,0,323:166221569
chr2	166221949	rs137868272	G	GT	474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.97;ReadPosRankSum=2.26;SOR=1.893;VQSLOD=4.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:87:87,0,116
chr2	166229509	rs12692768	C	T	420.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=1.63;SOR=1.292;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:13:260,0,13
chr2	166229922	rs6432821	T	C	6753.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=1.779;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1961,201,0
chr2	166231634	rs1368238	A	G	310.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=0.328;SOR=0.610;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:107,0,137
chr2	166245230	rs2060198	T	A	6122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=208;ExcessHet=3.9794;FS=6.146;MQ=59.11;MQRankSum=0.520;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-2.000e-02;SOR=1.147;VQSLOD=0.453;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:98,110:208:99:3048,0,2448
chr2	166431199	rs16850922	T	C	207.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.135;SOR=0.569;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:108,0,190
chr2	166514165	rs12620509	C	G	1344.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=42;ExcessHet=3.9794;FS=1.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.443;SOR=0.925;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:537,0,648
chr2	166514594	rs10803800	A	G	1021.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.280e-01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=1.00;SOR=0.941;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:98:186,0,98
chr2	166532660	rs777342	T	C	547.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.24;ReadPosRankSum=0.674;SOR=3.258;VQSLOD=18.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:70,0,64
chr2	166535918	rs777346	C	T	6040.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058e+00;DB;DP=67;ExcessHet=3.9794;FS=1.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=1.04;SOR=0.836;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,34:67:99:978,0,1001
chr2	166610972	rs67722214	CA	C	444.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020e-01;DB;DP=8;ExcessHet=6.9897;FS=1.805;MQ=60.00;MQRankSum=0.00;QD=11.71;ReadPosRankSum=0.708;SOR=0.250;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:66:66,0,121
chr2	166611006	rs62174818	C	T	993.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=17;ExcessHet=6.9897;FS=3.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=-2.170e-01;SOR=0.283;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:285,0,207
chr2	166611086	rs41268661	C	T	2002.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DB;DP=59;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.421;SOR=0.682;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,30:59:99:677,0,643
chr2	166611774	rs6705649	C	G	238.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.00;SOR=3.912;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr2	166615555	rs4667835	C	T	826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=13;ExcessHet=6.9897;FS=1.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=0.184;SOR=0.264;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:210,0,163
chr2	166618127	rs60031757	G	GA	947.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.46;ReadPosRankSum=-1.586e+00;SOR=0.649;VQSLOD=6.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:23:99:144,0,294
chr2	166618262	rs1968294	C	T	3792.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DB;DP=84;ExcessHet=6.9897;FS=5.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.882;SOR=0.607;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1159,0,1117
chr2	166621354	rs2113840	T	C	6549.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=2.531;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2057,183,0
chr2	166747445	rs146496725	G	C	378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.741e+00;DB;DP=51;ExcessHet=3.0103;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.42;ReadPosRankSum=-1.158e+00;SOR=0.420;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,20:51:99:387,0,835
chr2	166756518	.	CA	C	50.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.49;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:39:57,0,39
chr2	166770120	rs10176588	A	G	2564.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DB;DP=52;ExcessHet=1.5490;FS=2.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.980;SOR=0.655;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:627,0,532
chr2	166771663	rs7590559	C	T	927.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=-1.393e+00;SOR=0.693;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:218,0,122
chr2	166773971	rs6750044	G	A	2099.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.970;DB;DP=37;ExcessHet=1.5490;FS=0.000;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=1.58;SOR=0.657;VQSLOD=6.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:404,0,634
chr2	166780911	rs2163648	A	G	155.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.11;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr2	166781242	rs58208220	T	TA	1249.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.580e-01;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-8.830e-01;SOR=1.057;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,14:23:99:387,0,225
chr2	166786530	rs146900164	A	ATTTTAT	762.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.96;ReadPosRankSum=-1.242e+00;SOR=1.179;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:99:239,0,140
chr2	166786973	rs1560597	A	C	604.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.07;SOR=5.421;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	166788336	rs7592429	T	C	11867.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=1.318;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3692,345,0
chr2	166797444	rs12623658	T	A	399.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.76;ReadPosRankSum=0.235;SOR=0.420;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,5:12:99:0|1:166797444_T_A:183,0,566:166797444
chr2	166797450	rs7592392	C	A	819.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=16;ExcessHet=1.5490;FS=4.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=1.36;SOR=2.746;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,5:16:99:0|1:166797444_T_A:177,0,618:166797444
chr2	166797646	rs1432273	C	T	4216.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=109;ExcessHet=1.5490;FS=1.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=-4.920e-01;SOR=0.570;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,48:109:99:1190,0,1555
chr2	166799596	rs13000534	T	C	2228.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=8.015;VQSLOD=24.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:590,45,0
chr2	166799893	rs10930190	G	A	3273.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=4.332;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:630,51,0
chr2	166801924	rs6432853	C	G	600.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.38;ReadPosRankSum=0.272;SOR=0.859;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:84:193,0,84
chr2	166802306	rs36017587	ACTGT	A	1036.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=0.812;SOR=2.833;VQSLOD=6.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:99:288,0,104
chr2	166810053	rs6716946	C	T	2220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.97;SOR=6.556;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:838,60,0
chr2	166810161	rs59477041	G	GCCCGCTCA	10909.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.70;SOR=1.272;VQSLOD=4.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2699,185,0
chr2	166810373	rs1347041	A	G	10976.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.06;SOR=1.892;VQSLOD=18.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3867,372,0
chr2	166810433	rs5836068	GT	G	4788.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=5.909;VQSLOD=6.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1368,102,0
chr2	166866492	rs190366016	A	T	257.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.39;ReadPosRankSum=1.10;SOR=1.270;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:266,0,129
chr2	166870600	rs568376	A	G	599.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.70;SOR=5.670;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	166892346	rs11691603	A	G	571.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:55:243,0,55
chr2	166892444	rs34673057	TAAA	T	5069.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.147;DB;DP=32;ExcessHet=3.0103;FS=2.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.82;ReadPosRankSum=2.53;SOR=0.429;VQSLOD=6.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:96:1|1:166892444_TAAA_T:1430,96,0:166892444
chr2	166892448	rs114707732	A	T	4728.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.118e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.07;ReadPosRankSum=2.67;SOR=0.728;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:96:1|1:166892444_TAAA_T:1430,96,0:166892444
chr2	166892788	rs2298771	C	T	12127.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.576;DB;DP=153;ExcessHet=3.0103;FS=2.180;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=-2.446e+00;SOR=0.970;VQSLOD=6.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4885,459,0
chr2	166893081	rs7601520	G	A	2416.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.560e-01;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=1.00;SOR=0.888;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:806,77,0
chr2	166894120	rs66463257	AGTTT	A	2245.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.150e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=-1.841e+00;SOR=3.370;VQSLOD=4.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr2	166894165	rs67819222	C	CT	1561.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=20;ExcessHet=1.5490;FS=2.698;MQ=60.00;MQRankSum=0.00;QD=22.31;ReadPosRankSum=0.760;SOR=1.863;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,9:20:99:198,0,256
chr2	166894230	rs2020318	T	C	10814.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.86;DB;DP=90;ExcessHet=3.0103;FS=1.883;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=-1.501e+00;SOR=0.890;VQSLOD=6.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3214,270,0
chr2	166895708	rs374250692	CTGAG	C	74.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:17:0|1:166895708_CTGAG_C:81,0,17:166895708
chr2	166895725	rs1019724	T	C	153.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.77;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:17:0|1:166895708_CTGAG_C:81,0,17:166895708
chr2	166895761	rs1019723	A	G	117.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=1.38;SOR=0.941;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:61,0,67
chr2	166895819	rs10168027	A	G	317.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=0.744;SOR=1.911;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:127,0,136
chr2	166895913	rs201455607	CTTT	C,CT	2743.56	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.41;DB;DP=36;ExcessHet=3.0103;FS=1.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=-7.600e-02;SOR=0.468;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,16,16:36:99:1253,392,290,453,0,347
chr2	166896143	rs2126152	T	G	5723.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=-1.950e-01;SOR=0.673;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2002,189,0
chr2	166896287	rs6432859	T	G	1136.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.72;ReadPosRankSum=-6.720e-01;SOR=2.774;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:246,18,0
chr2	166897864	rs6432860	A	G	6842.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.218;DB;DP=70;ExcessHet=3.0103;FS=4.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=-1.163e+00;SOR=0.665;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2257,210,0
chr2	166897989	rs11394960	G	GA	2235.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=44;ExcessHet=6.9897;FS=0.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-3.620e-01;SOR=0.614;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,37:44:40:812,0,40
chr2	166898017	rs10198801	G	T	1902.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DB;DP=42;ExcessHet=1.5490;FS=0.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=-2.037e+00;SOR=0.945;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:393,0,561
chr2	166899102	rs10167228	T	A	810.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.40;ReadPosRankSum=0.00;SOR=4.003;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	166899878	rs7574618	G	A	423.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=4.977;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr2	166900606	rs6753355	A	C	3573.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.32;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.35;ReadPosRankSum=0.367;SOR=1.132;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1385,99,0
chr2	166901897	rs67636132	AG	A	697.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=-5.680e-01;SOR=3.014;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:250,0,107
chr2	166903188	rs538921	A	C	6973.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.62;DB;DP=65;ExcessHet=3.0103;FS=2.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.45;ReadPosRankSum=-2.720e-01;SOR=0.201;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1935,194,0
chr2	166903228	rs6432861	C	T	4339.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=88;ExcessHet=1.5490;FS=2.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=2.12;SOR=0.897;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1009,0,1034
chr2	166903445	rs7580482	T	C	6095.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.26;DB;DP=70;ExcessHet=3.0103;FS=5.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=0.208;SOR=1.125;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2134,210,0
chr2	166903660	rs13383628	T	C	231.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.02;ReadPosRankSum=0.00;SOR=2.584;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:79,0,32
chr2	166904025	rs11690959	G	A	643.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=5.670;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr2	166904062	rs11690962	G	T	1282.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=1.37;SOR=1.755;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,15:18:63:462,0,63
chr2	166904346	rs1461193	G	A	4428.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.910e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=0.448;SOR=0.628;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1319,111,0
chr2	166905375	rs1542484	A	G	2432.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.710e-01;DB;DP=59;ExcessHet=1.5490;FS=5.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=-1.220e-01;SOR=0.343;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,28:59:99:677,0,831
chr2	166905480	rs994399	G	A	4062.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=55;ExcessHet=3.0103;FS=0.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=-1.634e+00;SOR=0.801;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1726,165,0
chr2	166905572	rs1542483	T	A	569.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.78;ReadPosRankSum=-3.440e-01;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:176,0,240
chr2	166905634	.	TACTTTACAGTGCAAAGTATTTCTTCATTATGAAGAAATGACATTAGATTAGATACAGTGCAAAGATACTTTAGAC	T	76.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.81;ReadPosRankSum=-1.150e+00;SOR=2.303;VQSLOD=4.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:83:83,0,257
chr2	166908113	rs6750294	T	A	315.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=0.497;SOR=0.527;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:183,0,171
chr2	166909544	rs3812718	C	T	871.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.350e-01;DB;DP=25;ExcessHet=1.5490;FS=1.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=1.09;SOR=0.509;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,7:25:99:150,0,523
chr2	166909559	rs3812719	C	A	1600.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.496;DB;DP=22;ExcessHet=3.0103;FS=3.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=-8.660e-01;SOR=1.287;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:792,66,0
chr2	166909695	rs2217199	A	G	131.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-1.645e+00;SOR=1.981;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:34:62,0,34
chr2	166912757	rs1461203	C	T	490.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.68;ReadPosRankSum=0.524;SOR=2.584;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,100
chr2	166915014	rs8191987	A	G	283.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=11;ExcessHet=3.9794;FS=4.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=1.10;SOR=0.083;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:110,0,238
chr2	166915335	rs10930201	C	A	1048.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.84;ReadPosRankSum=0.703;SOR=2.584;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:477,36,0
chr2	166930214	rs566839	T	A	3986.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=3.611;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1402,114,0
chr2	167056337	rs149207258	C	A	1047.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118e+00;DB;DP=92;ExcessHet=3.0103;FS=1.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=1.72;SOR=0.502;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,41:92:99:1056,0,1424
chr2	167056428	rs4303728	G	A	526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=1.51;SOR=0.684;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:535,0,520
chr2	167060449	rs10180721	A	T	4570.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e+00;DB;DP=51;ExcessHet=3.0103;FS=0.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=-9.000e-01;SOR=0.866;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1867,153,0
chr2	167060980	rs77944059	GAAAC	G	913.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.400e-01;DB;DP=8;ExcessHet=3.0103;FS=1.900;MQ=60.00;MQRankSum=0.00;QD=31.51;ReadPosRankSum=-1.594e+00;SOR=0.393;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr2	167082978	rs7595255	T	C	1159.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.510e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.52;ReadPosRankSum=1.02;SOR=2.833;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:435,33,0
chr2	167084380	rs72364542	A	AT	169.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=-1.830e-01;SOR=1.270;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:88:178,0,88
chr2	167084429	rs3793936	C	T	663.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.71;SOR=5.784;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:162,15,0
chr2	167085079	rs58595486	GTT	G	479.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=0.366;SOR=0.412;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,1:6:27:27,0,199
chr2	167085124	rs10199799	T	G	2046.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.47;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.69;ReadPosRankSum=0.835;SOR=1.543;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:694,51,0
chr2	167085141	rs58519838	CTT	C	2449.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.92;ReadPosRankSum=0.746;SOR=0.786;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,6:23:99:201,0,696
chr2	167089713	rs146040585	A	ATATG	794.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.296;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.78;ReadPosRankSum=-4.570e-01;SOR=1.044;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:167089713_A_ATATG:270,18,0:167089713
chr2	167089736	rs116398099	C	T	168.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;QD=21.03;ReadPosRankSum=-7.030e-01;SOR=2.833;VQSLOD=17.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:65:0|1:167089713_A_ATATG:177,0,65:167089713
chr2	167089976	rs75230218	T	C	646.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=51;ExcessHet=3.0103;FS=5.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.076;SOR=1.508;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:655,0,673
chr2	167090042	rs722204	G	A	2039.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.202e+00;DB;DP=22;ExcessHet=3.0103;FS=1.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=-1.075e+00;SOR=1.340;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:731,66,0
chr2	167099158	rs6746030	A	G	5351.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.470e-01;DB;DP=40;ExcessHet=3.0103;FS=1.474;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-2.970e-01;SOR=0.888;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1252,120,0
chr2	167129497	rs13395140	A	T	229.38	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=-1.006e+00;SOR=1.609;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr2	167137119	rs6432893	G	A	3138.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.915;DB;DP=51;ExcessHet=3.9794;FS=0.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-1.980e-01;SOR=0.617;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1563,150,0
chr2	167140838	rs7607896	C	T	1067.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.460e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=0.750;SOR=1.414;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:403,30,0
chr2	167144974	rs6747673	A	T	1625.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.492e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=0.033;SOR=1.038;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:724,57,0
chr2	167144995	rs13402180	T	C	1286.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=22;ExcessHet=1.5490;FS=7.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=1.69;SOR=2.324;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:870,66,0
chr2	167145142	rs13414203	A	G	1950.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.183;DB;DP=37;ExcessHet=1.5490;FS=3.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=0.821;SOR=1.209;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1235,111,0
chr2	167149693	rs7588632	G	A	3884.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.030e-01;DB;DP=48;ExcessHet=3.9794;FS=6.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=0.175;SOR=1.225;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1672,144,0
chr2	167159946	rs13017637	C	T	326.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=4.407;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	167162277	rs4429487	G	A	8779.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DB;DP=97;ExcessHet=3.0103;FS=2.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=0.982;SOR=0.869;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,53:97:99:1298,0,1011
chr2	167163043	rs9646771	T	C	6046.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;DB;DP=84;ExcessHet=3.9794;FS=1.526;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=0.565;SOR=0.669;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1065,0,939
chr2	167163199	rs9646772	A	T	1999.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225e+00;DB;DP=27;ExcessHet=3.9794;FS=2.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=-5.500e-02;SOR=1.439;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:284,0,470
chr2	167163372	rs4583483	T	C	1504.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=15;ExcessHet=6.9897;FS=2.694;MQ=60.00;MQRankSum=0.00;QD=25.50;ReadPosRankSum=-1.120e-01;SOR=1.185;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,8:15:99:0|1:167163372_T_C:305,0,322:167163372
chr2	167163373	rs4443015	C	A	1504.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e+00;DB;DP=15;ExcessHet=6.9897;FS=2.694;MQ=60.00;MQRankSum=0.00;QD=25.50;ReadPosRankSum=-1.090e-01;SOR=1.185;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,8:15:99:0|1:167163372_T_C:305,0,322:167163372
chr2	167163663	rs4447616	C	T	3752.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=52;ExcessHet=3.9794;FS=3.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=-8.100e-01;SOR=0.971;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,35:52:99:1004,0,406
chr2	167168093	rs6432901	C	T	7330.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.127e+00;DB;DP=75;ExcessHet=3.0103;FS=2.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=0.663;SOR=0.949;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,36:75:99:823,0,1138
chr2	167168464	rs4131162	A	G	612.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.63;ReadPosRankSum=0.241;SOR=3.056;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:95:211,0,95
chr2	167266064	rs17819028	A	G	340.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=1.02;SOR=1.981;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:85:349,0,85
chr2	167279922	rs6738031	C	A	4092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=2.100;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:894,81,0
chr2	167292882	rs7596356	C	T	504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=-5.800e-02;SOR=0.631;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:513,0,230
chr2	167293032	rs4476364	T	C	815.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368e+00;DB;DP=61;ExcessHet=3.0103;FS=6.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.17;SOR=0.353;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,35:61:99:824,0,664
chr2	167301690	rs113442768	G	T	36.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.01;SOR=0.693;VQSLOD=14.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	167313451	rs11888208	T	C	270.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.570e-01;DB;DP=29;ExcessHet=3.0103;FS=1.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=2.08;SOR=0.346;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:279,0,468
chr2	167328750	rs2293567	C	T	2777.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=3.471;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:167328750_C_T:866,72,0:167328750
chr2	167328754	rs36063236	C	T	282.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=25;ExcessHet=3.0103;FS=4.384;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-2.800e-02;SOR=1.802;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,9:25:99:0|1:167328750_C_T:291,0,422:167328750
chr2	167330590	rs150350335	TAATG	T	70.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.39;ReadPosRankSum=-1.146e+00;SOR=0.321;VQSLOD=6.54;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:79:79,0,802
chr2	167334085	rs7565062	G	T	4953.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=1.314;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1112,96,0
chr2	167334234	rs16852181	T	C	810.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=56;ExcessHet=3.0103;FS=1.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-3.220e-01;SOR=0.879;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,35:56:99:819,0,427
chr2	168102774	rs72884678	G	T	761.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623e+00;DB;DP=67;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.650;SOR=0.468;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,30:67:99:770,0,1046
chr2	168571564	rs34416992	A	G	6251.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.77;DB;DP=161;ExcessHet=6.9897;FS=1.758;MQ=57.76;MQRankSum=-1.052e+00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-1.175e+00;SOR=0.838;VQSLOD=-4.779e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,68:161:99:1853,0,2342
chr2	168572093	rs10168562	G	T	7363.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958e+00;DB;DP=78;ExcessHet=3.9794;FS=7.732;MQ=59.91;MQRankSum=0.00;QD=26.39;ReadPosRankSum=0.074;SOR=0.838;VQSLOD=5.05;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,32:78:99:0|1:168572093_G_T:1144,0,2915:168572093
chr2	168572098	rs10192010	A	G	7025.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=74;ExcessHet=3.9794;FS=5.009;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=1.43;SOR=0.708;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,28:74:99:0|1:168572093_G_T:1081,0,2876:168572093
chr2	168572438	rs4667969	G	A	13218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=59.36;POSITIVE_TRAIN_SITE;QD=30.96;SOR=0.870;VQSLOD=3.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4616,462,0
chr2	168996775	rs2278785	T	C	1044.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.774e+00;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.50;ReadPosRankSum=-1.560e-01;SOR=0.399;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:782,66,0
chr2	168997097	rs2278784	A	G	1961.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.410e-01;DB;DP=46;ExcessHet=1.5490;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=-3.080e-01;SOR=1.030;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1425,137,0
chr2	169020166	rs2292785	G	A	940.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.70;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=0.182;SOR=1.609;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:169020166_G_A:360,24,0:169020166
chr2	169020179	rs2292786	C	T	1153.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.270e-01;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.83;ReadPosRankSum=-1.800e-02;SOR=1.609;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:169020166_G_A:436,30,0:169020166
chr2	169024141	rs13403999	A	G	1255.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.54;ReadPosRankSum=1.08;SOR=0.646;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:922,81,0
chr2	169418006	rs6433073	C	A	1117.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=2.517;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:415,36,0
chr2	169487610	rs11347055	GT	G	1614.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.33;SOR=3.804;VQSLOD=6.52;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:395,42,0
chr2	169487668	rs4667585	A	C	799.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=5;ExcessHet=3.0103;FS=3.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=0.275;SOR=2.215;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:223,15,0
chr2	169551748	rs2288188	T	G	139.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.21;ReadPosRankSum=-8.420e-01;SOR=1.329;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:148,0,67
chr2	169571414	rs13014488	G	T	1022.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.649e+00;DB;DP=20;ExcessHet=6.9897;FS=1.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.265;SOR=0.515;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:254,0,306
chr2	169658944	rs6433093	A	C	334.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=0.842;SOR=2.494;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:149,0,63
chr2	169674655	rs830026	T	C	602.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=2.22;SOR=1.292;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,7:14:99:0|1:169674655_T_C:270,0,394:169674655
chr2	169674663	rs830025	A	T	633.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DB;DP=17;ExcessHet=1.5490;FS=1.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=2.73;SOR=1.402;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,7:17:99:0|1:169674655_T_C:264,0,461:169674655
chr2	169674764	rs830024	C	G	373.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=16;ExcessHet=1.5490;FS=3.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.243;SOR=1.765;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:99:121,0,314
chr2	169674806	rs2461389	G	C	610.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.763e+00;DB;DP=14;ExcessHet=1.5490;FS=2.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=-1.013e+00;SOR=0.132;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:85:271,0,85
chr2	169681278	rs11374385	T	TTTTGTTTGTTTG	617.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.09;ReadPosRankSum=2.04;SOR=0.293;VQSLOD=5.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:187,0,707
chr2	169684457	rs700548	A	G	1561.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.98;SOR=5.784;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:389,27,0
chr2	169690729	rs522893	T	C	1755.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=53;ExcessHet=1.5490;FS=1.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=-1.043e+00;SOR=0.886;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,28:53:99:735,0,548
chr2	169707428	rs540652	C	T	4237.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DB;DP=107;ExcessHet=6.9897;FS=1.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-9.700e-02;SOR=0.594;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,60:107:99:1477,0,1247
chr2	169707552	rs488621	A	G	4662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.540e-01;DB;DP=109;ExcessHet=6.9897;FS=1.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-1.369e+00;SOR=0.618;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,57:109:99:1411,0,1280
chr2	169712115	rs58938408	C	CA	677.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.165;DB;DP=31;ExcessHet=6.9897;FS=1.790;MQ=59.42;MQRankSum=-1.192e+00;POSITIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=-6.300e-01;SOR=0.504;VQSLOD=1.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,12:31:99:185,0,364
chr2	169712148	.	C	CA	331.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=12;ExcessHet=6.9897;FS=0.000;MQ=58.88;MQRankSum=-5.850e-01;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.860;SOR=0.776;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,2:12:11:11,0,200
chr2	169713084	rs11385898	T	TA	957.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.065e+00;DB;DP=37;ExcessHet=6.9897;FS=4.714;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=1.13;SOR=0.387;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,18:37:99:338,0,379
chr2	169717541	rs2632372	T	C	1609.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335e+00;DB;DP=40;ExcessHet=6.9897;FS=1.989;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-1.252e+00;SOR=0.430;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:659,0,540
chr2	169717624	rs2685800	C	T	528.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.135;SOR=0.536;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:189,0,107
chr2	169721377	rs479661	G	A	1656.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=51;ExcessHet=6.9897;FS=1.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.230;SOR=0.817;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,21:51:99:577,0,702
chr2	169728069	.	GAAA	G	2084.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=0.283;SOR=0.685;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:19:99:301,0,386
chr2	169758247	rs34174689	GT	G	98.15	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.36;ReadPosRankSum=0.674;SOR=2.303;VQSLOD=5.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	169763148	rs560887	T	C	10882.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.06;SOR=1.126;VQSLOD=19.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3455,364,0
chr2	169764176	rs492594	G	C	12967.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.360e-01;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=1.65;SOR=0.239;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3535,330,0
chr2	169780366	rs579275	T	C	1215.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.775e+00;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-2.020e-01;SOR=0.532;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:243,0,425
chr2	169789016	rs497692	T	C	1966.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509e+00;DB;DP=52;ExcessHet=6.9897;FS=1.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.204;SOR=0.580;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,22:52:99:526,0,741
chr2	169801488	rs853789	A	G	2543.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DB;DP=18;ExcessHet=3.0103;FS=1.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.58;ReadPosRankSum=-2.270e-01;SOR=0.341;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:313,0,194
chr2	169814347	rs853773	A	G	768.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-2.070e-01;SOR=0.419;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:190,0,245
chr2	169814655	rs853772	G	T	3484.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=67;ExcessHet=6.9897;FS=3.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-7.000e-01;SOR=0.929;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,36:67:99:1045,0,704
chr2	169820618	rs4148796	A	G	2003.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=20;ExcessHet=3.9794;FS=2.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=0.347;SOR=1.277;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,11:20:99:0|1:169820618_A_G:424,0,518:169820618
chr2	169820619	rs4148795	T	C	2003.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=20;ExcessHet=3.9794;FS=2.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=0.289;SOR=1.277;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,11:20:99:0|1:169820618_A_G:424,0,518:169820618
chr2	169836698	rs2287620	T	G	75.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=2.303;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:169836698_T_G:86,6,0:169836698
chr2	169842809	rs2287618	T	C	489.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-4.640e-01;SOR=0.495;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:163,0,136
chr2	169923927	rs16856430	G	A	531.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.53;ReadPosRankSum=-4.250e-01;SOR=2.303;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,14:18:99:539,0,112
chr2	169952233	rs1059261	T	C	1870.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.127;SOR=0.696;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,37:62:99:1041,0,783
chr2	169952530	rs3732040	G	C	631.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.69;ReadPosRankSum=1.97;SOR=1.931;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:20:241,0,20
chr2	170003432	rs4667591	T	G	5148.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=96;ExcessHet=1.5490;FS=2.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=0.173;SOR=0.571;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,37:96:99:864,0,1475
chr2	170025198	rs143342962	GA	G	681.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.655;DB;DP=48;ExcessHet=3.0103;FS=1.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.00;SOR=0.913;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,27:48:99:690,0,494
chr2	170025340	rs2239602	C	T	609.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=1.44;SOR=1.519;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:87:87,0,201
chr2	170031529	.	T	TA	119.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=4;ExcessHet=6.9897;FS=3.539;MQ=60.00;MQRankSum=0.00;QD=3.42;ReadPosRankSum=0.745;SOR=1.562;VQSLOD=4.84;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,2:4:9:19,0,9
chr2	170050472	rs2075248	T	C	2057.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=35;ExcessHet=1.5490;FS=1.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=0.762;SOR=0.449;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:576,0,434
chr2	170053505	rs2228171	C	T	2545.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=84;ExcessHet=3.9794;FS=1.230;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.690;SOR=0.576;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,47:84:99:1206,0,1002
chr2	170053580	rs2302696	C	T	966.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.317e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.453;SOR=0.660;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:388,0,340
chr2	170055255	rs16823023	T	C	2537.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DB;DP=87;ExcessHet=3.9794;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-1.360e-01;SOR=0.829;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1206,0,1092
chr2	170058497	rs16856600	G	A	788.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281e+00;DB;DP=17;ExcessHet=1.5490;FS=2.694;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=-2.014e+00;SOR=0.207;VQSLOD=6.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:149,0,378
chr2	170059190	rs2239599	T	C	2043.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=57;ExcessHet=3.9794;FS=1.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.889;SOR=0.888;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,38:57:99:1039,0,410
chr2	170077165	rs3815572	C	T	128.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.697;SOR=0.693;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:137,0,155
chr2	170082013	rs2075246	A	G	362.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=25;ExcessHet=3.0103;FS=1.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-1.469e+00;SOR=1.204;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:371,0,285
chr2	170088046	rs4668128	G	A	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.103;SOR=0.486;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:396,0,535
chr2	170088477	rs2302693	T	C	654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=57;ExcessHet=3.0103;FS=1.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-3.780e-01;SOR=0.983;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:663,0,833
chr2	170088506	rs2302692	T	C	389.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.490e-01;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=-1.159e+00;SOR=0.556;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,18:45:99:398,0,717
chr2	170088623	rs3926693	C	T	85.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=0.431;SOR=0.223;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,221
chr2	170088719	rs202073364	TAA	T	59.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.88;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:28:67,0,28
chr2	170089824	rs2239596	T	C	477.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=13;ExcessHet=3.9794;FS=1.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=1.32;SOR=0.439;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:51:51,0,294
chr2	170096018	rs830973	G	A	1092.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.771;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.991;SOR=0.737;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,25:40:99:687,0,366
chr2	170099291	rs831040	C	T	373.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.701;SOR=0.299;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:306,0,336
chr2	170099446	rs831041	T	G	2338.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=101;ExcessHet=3.9794;FS=4.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=1.72;SOR=1.040;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,45:101:99:1312,0,1515
chr2	170099473	rs831042	T	C	2501.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.236;DB;DP=121;ExcessHet=3.9794;FS=1.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.332;SOR=0.828;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,53:121:99:1360,0,1749
chr2	170099895	rs2075255	A	C	2675.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089e+00;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=0.313;SOR=0.739;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,26:58:99:0|1:170099895_A_C:982,0,1967:170099895
chr2	170099899	rs2075254	G	A	2678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=1.13;SOR=0.714;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,27:62:99:0|1:170099895_A_C:997,0,2008:170099895
chr2	170103336	rs831043	T	C	3043.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=135;ExcessHet=3.9794;FS=0.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=1.05;SOR=0.655;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,58:135:99:1394,0,1936
chr2	170103351	rs2075249	G	T	5808.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.690e-01;DB;DP=134;ExcessHet=1.5490;FS=0.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=-1.867e+00;SOR=0.736;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4093,401,0
chr2	170112478	rs3836046	T	TA	246.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=1.98;SOR=0.976;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:91:91,0,127
chr2	170115588	rs2241190	T	C	3268.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950e-01;DB;DP=152;ExcessHet=3.9794;FS=0.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=1.33;SOR=0.640;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,69:152:99:1705,0,2132
chr2	170129528	rs830994	G	A	5299.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=88;ExcessHet=3.9794;FS=1.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=-6.300e-02;SOR=0.807;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,38:88:99:1007,0,1219
chr2	170129636	rs830995	A	G	2500.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.343e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=-2.928e+00;SOR=0.621;VQSLOD=22.37;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,27:27:81:978,81,0
chr2	170134191	rs831003	G	C	2542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=29.96;SOR=3.360;VQSLOD=5.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1066,84,0
chr2	170136180	rs12991585	A	C	63.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:72:72,0,108
chr2	170137190	rs831005	A	G	679.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=5.784;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	170139180	rs831009	G	A	495.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.63;SOR=5.136;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr2	170139346	rs831010	C	T	5555.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=1.988;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1411,135,0
chr2	170139639	rs831011	A	G	2174.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=4.443;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:474,39,0
chr2	170145426	rs831017	G	A	503.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=23;ExcessHet=3.9794;FS=4.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.00;SOR=2.200;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:353,0,321
chr2	170150671	rs2229266	G	A	1626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=62;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-3.770e-01;SOR=0.738;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,27:62:99:621,0,795
chr2	170151354	rs2673173	G	A	158.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.00;SOR=3.611;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
chr2	170163768	rs2247506	T	C	2357.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=112;ExcessHet=3.9794;FS=2.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=-1.580e-01;SOR=0.852;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,51:112:99:1181,0,1467
chr2	170175109	rs861239	T	C	195.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.56;MQRankSum=-6.050e-01;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=1.35;SOR=0.859;VQSLOD=1.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:204,0,169
chr2	170175334	rs2229263	T	C	1725.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=127;ExcessHet=3.0103;FS=0.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.239;SOR=0.724;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,66:127:99:1734,0,1466
chr2	170218816	rs1559013	T	C	7453.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=59.94;QD=30.50;SOR=3.160;VQSLOD=3.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2688,228,0
chr2	170218847	rs1559014	C	G	10800.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=2.121;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3728,339,0
chr2	170336024	rs1879466	G	C	12520.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=1.187;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4187,411,0
chr2	170338986	rs16823068	C	A	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413e+00;DB;DP=40;ExcessHet=3.0103;FS=1.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=0.123;SOR=1.574;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:733,0,491
chr2	170339003	rs2353187	C	A	4892.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=3.344;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1198,99,0
chr2	170350067	rs12465387	G	A	103.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=0.431;SOR=1.329;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:112,0,67
chr2	170350485	rs74403530	T	C	117.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=0.431;SOR=1.329;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:126,0,64
chr2	170354138	rs35487251	G	A	392.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.91;ReadPosRankSum=-1.399e+00;SOR=0.745;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,17:44:99:401,0,688
chr2	170355912	rs41458351	C	A	257.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=1.44;SOR=1.270;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:266,0,161
chr2	170355944	rs12692909	A	T	2356.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.731e+00;DB;DP=25;ExcessHet=3.9794;FS=1.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=0.790;SOR=0.973;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:409,0,438
chr2	170367151	rs139415849	T	G	667.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.389e+00;DB;DP=70;ExcessHet=3.0103;FS=10.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=-1.297e+00;SOR=0.302;VQSLOD=18.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,27:70:99:676,0,1292
chr2	170370976	rs2293058	T	C	419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=1.07;SOR=1.179;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:428,0,422
chr2	170374607	rs13012306	C	T	511.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=1.78;SOR=0.638;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:325,0,158
chr2	170377737	rs6738934	A	G	335.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:76,0,33
chr2	170386294	rs7349274	G	A	383.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=39;ExcessHet=3.0103;FS=1.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=1.72;SOR=0.961;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,15:39:99:392,0,614
chr2	170388096	.	TAC	T	40.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DP=10;ExcessHet=3.0103;FS=4.228;MQ=60.00;MQRankSum=0.00;QD=4.03;ReadPosRankSum=0.623;SOR=0.061;VQSLOD=4.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:49:49,0,265
chr2	170393957	rs12987510	C	T	70.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=-1.150e+00;SOR=0.446;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:79,0,26
chr2	170402629	rs13013167	C	T	486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.46;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-1.047e+00;SOR=1.022;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:210,0,221
chr2	170402752	rs2290010	T	C	935.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429e+00;DB;DP=60;ExcessHet=3.0103;FS=2.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.450;SOR=0.349;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,35:60:99:944,0,734
chr2	170413524	rs11289947	CA	C	581.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.67;SOR=6.184;VQSLOD=4.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr2	170417349	.	CT	C	188.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=4.72;ReadPosRankSum=1.14;SOR=0.631;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:50:50,0,67
chr2	170425508	rs374268347	CAA	C	152.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.90;MQRankSum=0.00;QD=3.32;ReadPosRankSum=0.522;SOR=0.631;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,3:9:99:0|1:170425508_CAA_C:105,0,311:170425508
chr2	170425523	rs2683446	A	C	1705.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=12;ExcessHet=3.9794;FS=6.133;MQ=59.93;MQRankSum=0.431;NEGATIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=0.563;SOR=1.933;VQSLOD=-1.236e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:170425508_CAA_C:124,0,340:170425508
chr2	170441001	rs2276611	G	A	1264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.040e-01;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=1.39;SOR=0.752;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,58:135:99:1273,0,1921
chr2	170463547	rs72623200	T	C	1096.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-2.360e-01;SOR=0.608;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1105,0,761
chr2	170487154	rs4668149	C	G	376.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:312,21,0
chr2	170487680	rs2305176	G	C	120.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=2.833;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr2	170488454	rs3754921	A	G	1735.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.090e-01;DB;DP=33;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=-6.160e-01;SOR=0.811;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1147,99,0
chr2	170488627	rs3754920	A	C	164.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=3.258;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr2	170492567	rs2290007	A	G	948.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.800;DB;DP=16;ExcessHet=1.5490;FS=2.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=1.36;SOR=0.260;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:658,48,0
chr2	170492584	rs2290008	T	C	1086.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.187e+00;DB;DP=22;ExcessHet=1.5490;FS=7.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=2.31;SOR=0.087;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:792,66,0
chr2	170493103	rs1050354	T	A	1652.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.237;DB;DP=31;ExcessHet=1.5490;FS=4.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=-2.190e+00;SOR=0.307;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1140,93,0
chr2	170493863	rs8207	A	G	872.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.810e-01;DB;DP=27;ExcessHet=3.9794;FS=11.503;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.260;SOR=0.137;VQSLOD=18.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:292,0,394
chr2	170504527	rs4668152	G	A	86.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.006e+00;SOR=0.495;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:95:95,0,130
chr2	170504672	.	CAAAAAAAAAAAAAAAA	C	1153.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DP=27;ExcessHet=3.9794;FS=1.324;MQ=59.75;MQRankSum=0.00;QD=25.63;ReadPosRankSum=1.09;SOR=1.121;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,16:27:99:632,0,664
chr2	170505684	rs3213946	G	A	1464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=63;ExcessHet=3.9794;FS=9.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.216;SOR=1.620;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,24:63:99:644,0,1087
chr2	170510374	rs13011829	C	T	166.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.524;SOR=0.892;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:108,0,30
chr2	170531572	rs11682248	T	C	1854.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DB;DP=40;ExcessHet=3.9794;FS=0.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.00;ReadPosRankSum=0.132;SOR=0.551;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,28:40:99:889,0,344
chr2	170531614	rs11688600	A	G	697.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-02;DB;DP=11;ExcessHet=3.9794;FS=5.934;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=0.369;SOR=0.091;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:91:239,0,91
chr2	170550482	rs10555840	AGCTGGG	A	277.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=4;ExcessHet=1.5490;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=-6.970e-01;SOR=2.833;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	170550727	rs11690884	G	T	1936.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102e+00;DB;DP=103;ExcessHet=3.9794;FS=0.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=-2.620e-01;SOR=0.759;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,42:103:99:874,0,1575
chr2	170550839	rs3820952	A	G	2294.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.400e-02;DB;DP=104;ExcessHet=3.9794;FS=11.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-7.000e-02;SOR=0.287;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,46:104:99:1015,0,1566
chr2	170550956	rs1446901	A	C	713.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=2.01;SOR=0.446;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:452,36,0
chr2	170558231	rs11685651	T	C	1087.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=29;ExcessHet=3.9794;FS=3.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=1.12;SOR=1.270;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,7:29:99:177,0,604
chr2	170558293	rs200739872	AAAAAG	A	586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DB;DP=12;ExcessHet=3.9794;FS=2.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=1.01;SOR=1.802;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:99:99,0,443
chr2	170598244	rs6717930	A	G	146.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	170605981	rs4667607	C	T	7070.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=1.664;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2083,195,0
chr2	170606423	rs72113382	TTATA	T	566.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.02;SOR=2.147;VQSLOD=4.87;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:38:1|1:170606423_TTATA_T:583,38,0:170606423
chr2	170606450	rs79825047	C	T	2621.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.22;SOR=2.303;VQSLOD=18.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:170606423_TTATA_T:540,36,0:170606423
chr2	170606478	.	T	TATATGTGTATATATACGCATGTATGTATAC	997.18	PASS	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.22;SOR=2.517;VQSLOD=4.64;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:24:1|1:170606423_TTATA_T:360,24,0:170606423
chr2	170606496	rs144201291	C	CGCAT	615.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.24;SOR=2.833;VQSLOD=4.63;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:170606423_TTATA_T:90,6,0:170606423
chr2	170606553	rs11444477	A	AC	123.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=2.833;VQSLOD=6.33;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:170606538_C_CAT:135,9,0:170606538
chr2	170606556	.	A	T	168.60	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.26;SOR=2.833;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:12:1|1:170606538_C_CAT:180,12,0:170606538
chr2	170606570	rs10186045	G	A	177.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.63;SOR=0.693;VQSLOD=19.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:16:1|1:170606538_C_CAT:189,16,0:170606538
chr2	170606588	rs10164488	A	G	213.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.16;SOR=1.022;VQSLOD=19.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:170606538_C_CAT:225,15,0:170606538
chr2	170606613	rs58026861	CAT	C	364.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.27;SOR=0.693;VQSLOD=5.55;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:8:1|1:170606538_C_CAT:375,8,0:170606538
chr2	170606654	rs71006031	ATG	A	858.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;DB;DP=18;ExcessHet=3.9794;FS=11.504;MQ=60.00;MQRankSum=0.00;QD=25.24;ReadPosRankSum=3.61;SOR=1.078;VQSLOD=0.209;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,14:18:99:557,0,126
chr2	170606658	rs1469355	G	A	1840.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=59.70;QD=26.17;SOR=0.733;VQSLOD=0.807;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:766,57,0
chr2	170606724	rs10164599	A	G	3120.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=31.84;SOR=0.914;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1088,102,0
chr2	170632896	rs10930376	T	C	806.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=1.08;SOR=0.662;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:357,0,314
chr2	170632960	rs150673586	C	CA	3183.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DB;DP=38;ExcessHet=3.9794;FS=3.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=-1.320e-01;SOR=0.916;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,18:38:99:0|1:170632960_C_CA:696,0,779:170632960
chr2	170632969	rs55969365	C	A	3338.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=40;ExcessHet=3.9794;FS=1.438;MQ=60.00;MQRankSum=0.00;QD=25.49;ReadPosRankSum=0.490;SOR=0.814;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,18:40:99:0|1:170632960_C_CA:690,0,822:170632960
chr2	170633023	rs11422611	T	TA	2744.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.520e-01;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=0.332;SOR=0.650;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,21:40:99:647,0,591
chr2	170633067	rs6745191	G	T	2206.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308e+00;DB;DP=37;ExcessHet=3.9794;FS=1.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=0.061;SOR=0.887;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:451,0,425
chr2	170633103	rs11325477	GA	G	2751.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.15;SOR=1.457;VQSLOD=4.14;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1008,81,0
chr2	170662634	rs13393212	C	A	195.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.11;SOR=0.141;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,116
chr2	170663800	rs3135036	C	G	299.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=5;ExcessHet=6.9897;FS=3.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=1.12;SOR=0.132;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:40:107,0,40
chr2	170665108	rs2556352	G	A	2578.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.709e+00;DB;DP=24;ExcessHet=3.9794;FS=9.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=-3.230e-01;SOR=0.064;VQSLOD=19.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:324,0,528
chr2	170668106	rs2246149	G	A	792.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=-4.100e-02;SOR=0.609;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:106,0,227
chr2	170668813	rs3731674	C	T	1241.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.694e+00;DB;DP=24;ExcessHet=6.9897;FS=2.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-3.750e-01;SOR=1.043;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:340,0,369
chr2	170676227	rs1541776	T	C	1270.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.24;ReadPosRankSum=0.701;SOR=1.091;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:34:366,0,34
chr2	170677837	rs59311986	AC	A	611.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=1.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-3.690e-01;SOR=0.773;VQSLOD=1.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,7:21:99:206,0,488
chr2	170677855	rs34089373	G	GT	804.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=-8.430e-01;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.246;SOR=0.579;VQSLOD=1.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,13:17:62:309,0,62
chr2	170684224	rs2303555	C	T	2317.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.66;ReadPosRankSum=-1.500e-02;SOR=0.663;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,27:44:99:853,0,469
chr2	170684743	rs9287921	G	A	1461.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.17;POSITIVE_TRAIN_SITE;QD=27.93;SOR=5.031;VQSLOD=5.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr2	170734820	rs11890973	G	A	317.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=-1.800e-01;SOR=0.446;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:70,0,36
chr2	170734871	rs34505529	C	CA	121.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.17;ReadPosRankSum=0.703;SOR=0.804;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:46:46,0,84
chr2	170735285	rs2354232	G	C	378.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.09;ReadPosRankSum=-5.240e-01;SOR=0.941;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:34:34,0,112
chr2	170762487	rs10171268	C	T	4592.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=2.321;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1338,126,0
chr2	170762566	rs10194785	A	T	2149.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=95;ExcessHet=3.9794;FS=3.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-2.240e-01;SOR=0.973;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,41:95:99:995,0,1202
chr2	170770833	rs1031774	G	C	433.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=0.00;SOR=1.911;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:161,0,25
chr2	170782037	rs1461958	C	T	1311.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=6.994;VQSLOD=24.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr2	170782338	rs13016918	C	T	1197.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=14;ExcessHet=3.9794;FS=1.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=0.825;SOR=1.136;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:210,0,174
chr2	170783092	rs140309188	CAAAAACA	C	1172.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DB;DP=12;ExcessHet=3.9794;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=-3.280e-01;SOR=2.649;VQSLOD=6.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:99:99,0,582
chr2	170784004	rs6723655	T	C	525.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.52;SOR=0.997;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:320,0,282
chr2	170784049	rs898851	G	A	1203.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.64;POSITIVE_TRAIN_SITE;QD=33.67;SOR=6.869;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr2	170784085	rs200637573	GTT	G	297.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.32;POSITIVE_TRAIN_SITE;QD=27.05;SOR=4.977;VQSLOD=6.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
chr2	170785129	rs898849	A	G	567.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=5.549;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr2	170785484	rs10165565	G	A	610.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=19;ExcessHet=3.9794;FS=1.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.70;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:304,0,256
chr2	170815201	rs72012594	CTT	C	105.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.35;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:33:114,0,33
chr2	170821010	rs10197085	A	G	1917.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=97;ExcessHet=3.9794;FS=1.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.174;SOR=0.726;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,43:97:99:969,0,1262
chr2	170843469	rs2061620	T	C	586.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.70;SOR=5.421;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	170850738	rs1461959	T	C	3470.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=3.732;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:889,75,0
chr2	170857653	rs6747881	G	T	161.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.524;SOR=0.551;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,161
chr2	170870595	rs10497357	T	C	2261.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=47;ExcessHet=6.9897;FS=0.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.054;SOR=0.557;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:572,0,854
chr2	170870697	rs898853	C	T	1300.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=6.932;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:415,30,0
chr2	170871950	rs16857446	T	G	732.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050e-01;DB;DP=22;ExcessHet=3.9794;FS=1.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-2.640e-01;SOR=0.432;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,16:22:99:464,0,157
chr2	170871976	rs13028230	A	G	1796.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.020e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.28;ReadPosRankSum=-8.980e-01;SOR=0.976;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:575,48,0
chr2	170911950	rs6741614	T	C	810.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.561;SOR=0.793;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:444,0,313
chr2	170917648	rs10203212	A	G	2821.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DB;DP=97;ExcessHet=3.9794;FS=3.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.488;SOR=0.492;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,51:97:99:1223,0,1115
chr2	170917983	rs35032863	CT	C	3291.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.126e+00;DB;DP=48;ExcessHet=3.0103;FS=17.962;MQ=60.00;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=0.975;SOR=0.044;VQSLOD=0.471;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,42:48:99:1191,115,0
chr2	170929880	rs10202446	G	A	1559.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324e+00;DB;DP=38;ExcessHet=3.9794;FS=1.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=1.29;SOR=0.952;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:577,0,587
chr2	170930241	rs3217724	G	GA	389.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.327;SOR=0.693;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:94:94,0,156
chr2	171034900	rs72882094	G	T	480.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.822e+00;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-1.039e+00;SOR=0.818;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:489,0,594
chr2	171036895	rs78872896	C	G	271.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.279e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-1.240e-01;SOR=0.976;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:280,0,217
chr2	171036970	rs72882099	T	C	71.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:80,0,33
chr2	171070850	rs13423313	G	T	2656.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.390e-01;DB;DP=97;ExcessHet=6.9897;FS=5.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=0.348;SOR=1.005;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,31:97:99:646,0,1758
chr2	171070912	rs13385825	T	C	3894.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.170e-01;DB;DP=110;ExcessHet=6.9897;FS=3.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-9.760e-01;SOR=0.550;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,36:110:99:794,0,2061
chr2	171071369	rs4667626	C	T	8507.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=0.150;SOR=0.674;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,40:99:99:1000,0,1512
chr2	171073887	rs2161916	G	A	5612.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=106;ExcessHet=3.9794;FS=0.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=0.685;SOR=0.724;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,54:106:99:1385,0,1130
chr2	171092363	rs6433185	G	A	627.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.99;SOR=5.670;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	171092445	rs1035625	A	G	980.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=18;ExcessHet=6.9897;FS=1.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=-3.110e-01;SOR=0.329;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:342,0,227
chr2	171092865	rs17578787	A	C	327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.945;SOR=0.512;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:336,0,434
chr2	171192084	rs12466203	G	A	2453.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=50;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=-1.264e+00;SOR=0.630;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1685,150,0
chr2	171239560	rs12471568	A	G	1189.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568e+00;DB;DP=31;ExcessHet=3.9794;FS=0.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-3.970e-01;SOR=0.550;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:419,0,379
chr2	171240249	rs11675394	C	T	1738.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240e-01;DB;DP=58;ExcessHet=3.9794;FS=5.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.621;SOR=0.676;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,39:58:99:1029,0,490
chr2	171240550	rs2048987	T	A	476.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.37;SOR=5.283;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	171242865	rs9646733	G	T	1567.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.220e-01;DB;DP=48;ExcessHet=3.9794;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.302;SOR=0.568;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,31:48:99:691,0,493
chr2	171242878	rs9646782	A	G	1853.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445e+00;DB;DP=54;ExcessHet=3.9794;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=1.29;SOR=0.522;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,34:54:99:888,0,577
chr2	171242960	rs17607307	C	T	1065.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044e+00;DB;DP=26;ExcessHet=3.9794;FS=10.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=0.535;SOR=0.098;VQSLOD=19.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,18:26:99:550,0,223
chr2	171243489	rs115890206	A	G	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;DB;DP=26;ExcessHet=3.0103;FS=3.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=-2.364e+00;SOR=0.141;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:465,0,347
chr2	171248632	.	CA	C	397.47	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=6;ExcessHet=3.0103;FS=6.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=0.210;SOR=3.816;VQSLOD=4.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,5:6:3:64,0,3
chr2	171249093	rs2013102	C	T	897.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.971e+00;DB;DP=31;ExcessHet=3.9794;FS=1.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.981;SOR=1.188;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:31:99:587,0,407
chr2	171256597	rs7561268	A	C	2559.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734e+00;DB;DP=47;ExcessHet=6.9897;FS=4.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=0.689;SOR=1.397;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:741,0,657
chr2	171256912	.	CT	C	308.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131e+00;DP=38;ExcessHet=6.9897;FS=5.678;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.78;ReadPosRankSum=-8.320e-01;SOR=0.243;VQSLOD=5.70;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,4:38:19:19,0,817
chr2	171256930	rs10676575	T	TA	858.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DB;DP=39;ExcessHet=6.9897;FS=5.170;MQ=59.91;MQRankSum=0.00;QD=8.76;ReadPosRankSum=1.09;SOR=1.339;VQSLOD=4.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,9:39:99:271,0,717
chr2	171257687	rs7608448	T	C	552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=1.38;SOR=1.609;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:46:324,0,46
chr2	171257945	rs7568041	A	T	2498.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=87;ExcessHet=3.9794;FS=4.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-4.040e-01;SOR=0.989;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1162,0,1157
chr2	171258763	rs7571574	A	G	593.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=-5.240e-01;SOR=2.030;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,113
chr2	171260708	rs10930425	C	A	3253.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.89;SOR=2.254;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:908,83,0
chr2	171260787	rs6736609	G	A	9041.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.98;SOR=1.351;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2545,190,0
chr2	171260797	rs33962844	A	G	5521.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DB;DP=66;ExcessHet=3.9794;FS=3.412;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=-7.670e-01;SOR=0.478;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,42:66:99:1096,0,602
chr2	171260820	rs6751520	T	C	8828.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.83;SOR=1.273;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2487,222,0
chr2	171261021	rs6751781	T	G	5906.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=33.56;SOR=2.120;VQSLOD=5.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1736,156,0
chr2	171261190	rs1344941	T	C	374.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.01;SOR=2.303;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:180,15,0
chr2	171262421	rs10930426	C	T	435.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.35;SOR=3.611;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:209,18,0
chr2	171264091	rs138990294	T	TGCTCTGGATATGAAA	3361.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=6.770;VQSLOD=7.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:54:810,54,0
chr2	171264482	rs1561393	G	C	339.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-6.280e-01;SOR=1.609;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:198,0,174
chr2	171300575	rs17426211	C	A	2136.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870e-01;DB;DP=72;ExcessHet=6.9897;FS=0.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=-6.550e-01;SOR=0.639;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,31:72:99:725,0,1045
chr2	171300648	rs4667639	T	A	2792.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=1.17;SOR=0.714;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,28:73:99:637,0,1135
chr2	171323328	rs4359605	T	C	2540.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.02;SOR=3.327;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:845,69,0
chr2	171323416	rs2164963	A	C	791.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.81;ReadPosRankSum=0.464;SOR=3.816;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:56:240,0,56
chr2	171355198	rs6761297	A	G	12042.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=0.971;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3404,318,0
chr2	171355329	rs6733198	G	C	11951.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=1.179;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2814,261,0
chr2	171355426	rs6748052	T	C	5595.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.60;SOR=2.655;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1505,117,0
chr2	171355529	rs6733235	C	T	1353.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.96;SOR=7.054;VQSLOD=24.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
chr2	171356051	rs66474378	TTATTTA	T	1696.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100e-02;DB;DP=16;ExcessHet=3.9794;FS=2.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.27;ReadPosRankSum=-8.500e-02;SOR=1.885;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,13:16:99:537,0,197
chr2	171356274	rs10185178	G	A	8069.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.28;SOR=1.071;VQSLOD=4.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2962,293,0
chr2	171356423	rs9752383	T	C	1208.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.52;DB;DP=20;ExcessHet=3.9794;FS=4.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=-5.740e-01;SOR=2.419;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:204,0,439
chr2	171356492	rs6737166	C	G	558.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=5.421;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:220,18,0
chr2	171358044	rs10191689	G	A	1120.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.9794;FS=8.474;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.00;SOR=0.108;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:152,0,107
chr2	171358211	rs7593940	G	A	5917.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.16;SOR=0.855;VQSLOD=4.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1554,155,0
chr2	171358474	rs7608168	T	A	1236.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.36;ReadPosRankSum=-1.350e-01;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:97:150,0,97
chr2	171400275	rs12623840	T	C	128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=0.087;SOR=0.976;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,5:20:99:137,0,488
chr2	171400720	rs75945929	T	C	664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.19;ReadPosRankSum=1.29;SOR=0.756;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,19:22:57:673,0,57
chr2	171508262	rs6724627	G	A	1520.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=51;ExcessHet=3.9794;FS=6.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.281;SOR=1.218;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,15:51:99:288,0,937
chr2	171508490	rs10718459	CA	C	2002.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=2.448;VQSLOD=5.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:580,57,0
chr2	171509405	rs74918991	G	C	657.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670e+00;DB;DP=12;ExcessHet=3.9794;FS=8.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=1.69;SOR=0.050;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:226,0,134
chr2	171570488	rs7563812	C	G	2556.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=87;ExcessHet=3.9794;FS=2.683;MQ=59.98;MQRankSum=1.04;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.153;SOR=0.596;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1224,0,1162
chr2	171572940	rs3749036	G	A	7794.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;DB;DP=266;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=1.62;SOR=0.682;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,147:266:99:3831,0,3059
chr2	171627676	rs1861462	T	G	9034.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=28.15;SOR=0.846;VQSLOD=4.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3120,339,0
chr2	171632225	rs17694506	C	T	2613.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500e-02;DB;DP=59;ExcessHet=1.5490;FS=0.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=-2.314e+00;SOR=0.612;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,33:59:99:853,0,615
chr2	171632385	rs10626619	C	CTT	8146.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.32;SOR=0.796;VQSLOD=5.38;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2319,160,0
chr2	171632401	rs13028382	C	T	1417.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.601;DB;DP=53;ExcessHet=3.9794;FS=0.696;MQ=59.91;MQRankSum=0.983;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.927;SOR=0.588;VQSLOD=2.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,25:53:99:619,0,767
chr2	171634347	rs11334749	TA	T	4399.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=63;ExcessHet=1.5490;FS=1.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=-4.680e-01;SOR=0.463;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,33:63:99:1140,0,1019
chr2	171649402	rs3764916	C	T	662.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=1.44;SOR=0.820;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:364,0,318
chr2	171649644	rs3764915	G	A	103.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:111,0,107
chr2	171654321	rs7601631	A	G	669.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.287e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.60;ReadPosRankSum=2.29;SOR=0.804;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:24:290,24,0
chr2	171654663	rs2287111	A	C	3555.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=45;ExcessHet=3.0103;FS=2.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.45;ReadPosRankSum=-8.500e-01;SOR=0.456;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1541,135,0
chr2	171654773	rs2287110	G	C	546.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.15;ReadPosRankSum=1.83;SOR=2.179;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr2	171786169	rs2676158	A	G	1863.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.51;SOR=3.098;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:433,39,0
chr2	171811493	rs114314971	G	A	63.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:72,0,71
chr2	171813252	rs35604404	TAAA	T	240.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.76;ReadPosRankSum=-1.036e+00;SOR=0.160;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	171818289	rs2557804	G	A	7176.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=1.364;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2090,196,0
chr2	171822466	rs4668356	C	T	25548.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=299;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=0.773;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,299:299:99:9237,892,0
chr2	171854599	rs139997493	TCTAC	T	116.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.74;SOR=5.136;VQSLOD=0.424;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	171863724	rs2557795	C	T	110.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.74;SOR=2.833;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	171902604	rs6751462	A	T	359.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.39;SOR=4.804;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	171907036	rs2114595	T	C	661.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.76;ReadPosRankSum=-8.120e-01;SOR=1.708;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	171907077	rs3053706	CTCTA	C	251.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=3.912;VQSLOD=6.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	171912911	rs17283147	A	T	704.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.930e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.03;ReadPosRankSum=1.61;SOR=3.258;VQSLOD=18.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr2	171913207	rs200719254	CAA	C	811.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=0.842;SOR=1.765;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:422,33,0
chr2	171916371	rs3731990	C	T	420.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.90;SOR=3.442;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr2	171916664	rs2676130	A	T	1089.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.02;SOR=2.517;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:41:401,41,0
chr2	171923670	rs11399480	G	GT,GTT	525.43	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.14;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.95;ReadPosRankSum=0.00;SOR=0.462;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,2:9:19:211,45,19,150,0,144
chr2	172180771	rs10205459	A	G	6719.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=1.234;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1674,177,0
chr2	172195545	rs1733487	G	A	450.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=4.977;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	172291616	rs6751956	C	T	2204.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=40;ExcessHet=1.5490;FS=0.788;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.171;SOR=0.817;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1324,119,0
chr2	172305092	rs17220419	T	C	450.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=-1.569e+00;SOR=1.292;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:371,27,0
chr2	172305175	rs139655160	C	CT	1361.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.680e-01;DB;DP=45;ExcessHet=1.5490;FS=0.000;MQ=59.80;MQRankSum=0.00;QD=13.09;ReadPosRankSum=0.345;SOR=0.784;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,40:45:4:912,4,0
chr2	172305177	rs192861143	C	T	3049.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.770e-01;DB;DP=46;ExcessHet=1.5490;FS=0.000;MQ=59.81;MQRankSum=-1.356e+00;QD=28.77;ReadPosRankSum=0.340;SOR=0.631;VQSLOD=-2.098e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1978,138,0
chr2	172305519	.	CT	C	33.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=6.73;ReadPosRankSum=1.04;SOR=0.061;VQSLOD=5.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:42:42,0,69
chr2	172309506	rs3731985	T	A	1370.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.20;DB;DP=21;ExcessHet=1.5490;FS=5.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=0.812;SOR=2.303;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:812,63,0
chr2	172314254	rs60439518	G	A	255.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.28;SOR=4.174;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:272,21,0
chr2	172314644	rs58636477	AT	A	1418.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.510e-01;DB;DP=42;ExcessHet=1.5490;FS=2.486;MQ=60.00;MQRankSum=0.00;QD=17.74;ReadPosRankSum=0.908;SOR=1.251;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1182,126,0
chr2	172325140	rs62183504	A	G	78.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.71;SOR=2.303;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	172325162	rs10515933	C	T	72.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=2.303;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	172329202	rs6741663	T	C	1007.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.69;SOR=4.977;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:254,18,0
chr2	172329458	rs36112363	G	T	5560.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.422e+00;DB;DP=123;ExcessHet=1.5490;FS=0.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=0.746;SOR=0.615;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3662,368,0
chr2	172330393	rs3731983	A	G	2697.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=-3.700e-02;SOR=0.702;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1403,144,0
chr2	172333295	rs4668387	C	T	2219.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.320e+00;DB;DP=55;ExcessHet=1.5490;FS=4.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-1.048e+00;SOR=0.399;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1598,165,0
chr2	172336541	rs3731981	C	T	1381.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.026;DB;DP=22;ExcessHet=1.5490;FS=2.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=2.24;SOR=1.280;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:825,66,0
chr2	172380146	rs62181670	C	T	109.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.13;SOR=2.833;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	172398311	rs7586144	T	C	3091.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.910e-01;DB;DP=37;ExcessHet=3.9794;FS=0.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=0.956;SOR=0.539;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,23:37:99:641,0,404
chr2	172398371	rs57998592	CT	C	108.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=59.63;MQRankSum=0.00;QD=4.95;ReadPosRankSum=1.65;SOR=0.540;VQSLOD=5.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:16:37,0,16
chr2	172409721	rs2542941	C	T	463.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=0.390;SOR=0.765;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:97:97,0,149
chr2	172410874	rs2111719	C	T	661.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=5.670;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr2	172411273	rs10455	G	A	2014.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606e+00;DB;DP=40;ExcessHet=6.9897;FS=12.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-2.840e-01;SOR=0.165;VQSLOD=16.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,17:40:99:390,0,713
chr2	172563922	rs312925	G	A	2225.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.396e+00;DB;DP=51;ExcessHet=1.5490;FS=0.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=-5.520e-01;SOR=0.577;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1661,152,0
chr2	172564021	rs312924	A	T	769.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.34;DB;DP=10;ExcessHet=1.5490;FS=5.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=1.36;SOR=2.494;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:426,30,0
chr2	172569134	rs5836347	AT	A	529.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.500;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.08;ReadPosRankSum=-1.364e+00;SOR=1.893;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:223,24,0
chr2	172582111	rs35175731	T	TG	529.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.54;ReadPosRankSum=1.28;SOR=0.446;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,12:14:7:1|0:172582110_T_TTG:295,0,7:172582110
chr2	172582281	rs111251725	A	ATTAC	7837.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=36.05;SOR=0.752;VQSLOD=4.41;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2321,159,0
chr2	172586567	rs2292814	G	A	1423.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.21;SOR=7.223;VQSLOD=24.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr2	172642057	rs12692973	C	T	536.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.58;ReadPosRankSum=1.04;SOR=2.712;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:486,36,0
chr2	172644229	rs2292813	T	C	9740.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.06;SOR=1.351;VQSLOD=18.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3173,288,0
chr2	172650382	rs6745143	G	A	1246.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.300e-01;DB;DP=21;ExcessHet=1.5490;FS=1.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.98;ReadPosRankSum=1.39;SOR=1.201;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:794,63,0
chr2	172690265	rs908671	C	G	548.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=-2.310e-01;SOR=0.693;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:379,33,0
chr2	172704842	rs142996296	C	T	893.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=43;ExcessHet=3.0103;FS=1.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=-2.500e-02;SOR=1.609;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,28:43:99:902,0,363
chr2	172709215	rs3770444	G	C	3191.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=0.863;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:767,69,0
chr2	172712107	rs3836018	T	TG	306.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.81;SOR=1.609;VQSLOD=4.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr2	172712480	rs2056202	T	C	4228.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.10;SOR=2.049;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1179,104,0
chr2	172725301	rs1878583	A	G	13409.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.63;SOR=1.478;VQSLOD=5.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3178,312,0
chr2	172750916	rs146362438	G	GGGCC	273.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.000e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=0.00;SOR=1.270;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	172821739	rs1982288	G	T	1909.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.74;POSITIVE_TRAIN_SITE;QD=30.36;SOR=5.464;VQSLOD=5.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:651,51,0
chr2	172944650	rs788159	G	T	428.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=-8.120e-01;SOR=1.179;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr2	172944748	rs58045367	G	A	1831.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.66;SOR=7.614;VQSLOD=24.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:837,60,0
chr2	172950072	rs3106383	T	C	432.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.15;SOR=4.804;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:172950072_T_C:270,18,0:172950072
chr2	172950073	rs3098974	A	T	345.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=4.407;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:172950072_T_C:270,18,0:172950072
chr2	172952532	rs705868	A	C	2314.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=1.812;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:614,51,0
chr2	172966250	rs2228184	T	C	4943.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.934;DB;DP=83;ExcessHet=3.9794;FS=7.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=1.07;SOR=0.626;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2782,249,0
chr2	172967302	rs743605	C	T	1504.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010e-01;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.292;SOR=0.740;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:562,0,613
chr2	173339808	rs11895564	G	A	510.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.100e-01;DB;DP=35;ExcessHet=3.0103;FS=1.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.123e+00;SOR=1.112;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:519,0,470
chr2	173344474	rs1920979	A	G	265.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=29;ExcessHet=3.0103;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-4.130e-01;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:274,0,465
chr2	173353060	rs1319059	G	A	1694.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=23;ExcessHet=6.9897;FS=7.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=-1.530e-01;SOR=0.065;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:475,0,250
chr2	173366865	rs149079259	C	G	180.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=3.611;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	173427053	rs10176813	T	G	635.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443e+00;DB;DP=52;ExcessHet=3.0103;FS=5.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.257;SOR=0.529;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:644,0,659
chr2	173428874	rs6433368	C	T	3607.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=120;ExcessHet=6.9897;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-1.100e-02;SOR=0.795;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,64:120:99:1799,0,1318
chr2	173431421	.	CA	C	195.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.62;MQRankSum=0.00;QD=6.32;ReadPosRankSum=-6.970e-01;SOR=1.022;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:10:22:22,0,111
chr2	173435374	rs13417334	A	G	445.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.43;ReadPosRankSum=-1.692e+00;SOR=1.371;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:454,0,205
chr2	173435757	rs13394924	C	T	66.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:75,0,29
chr2	173457903	rs2290564	T	C	125.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:134,0,64
chr2	173460640	rs12693005	T	C	1239.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=89;ExcessHet=3.0103;FS=4.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-1.087e+00;SOR=1.105;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,52:89:99:1248,0,740
chr2	173600603	rs76443145	C	A	1074.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725e+00;DB;DP=36;ExcessHet=3.9794;FS=2.571;MQ=60.00;MQRankSum=0.00;QD=14.52;ReadPosRankSum=1.86;SOR=0.343;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,22:36:99:592,0,486
chr2	173600783	rs34574292	C	CG	14651.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.28;SOR=1.031;VQSLOD=4.37;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4369,352,0
chr2	173609173	rs13005651	T	A	3831.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DB;DP=161;ExcessHet=3.9794;FS=1.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.134;SOR=0.806;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,76:161:99:1626,0,2130
chr2	173659913	rs7585729	T	C	1926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=3.611;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:422,33,0
chr2	173686663	rs2258180	G	T	1503.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888e+00;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-5.650e-01;SOR=0.688;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:706,0,631
chr2	173686798	rs2258175	A	G	1769.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.770e-01;DB;DP=66;ExcessHet=3.9794;FS=1.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=2.00;SOR=0.589;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,36:66:99:911,0,798
chr2	173782975	.	CTT	C,CT	1114.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.27;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.55;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=2.61;SOR=1.244;VQSLOD=6.43;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:0,9,5:14:61:312,88,61,160,0,122
chr2	173825269	rs2592939	G	T	67.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=2.303;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	173848200	rs59582070	C	CT	1451.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.33;ReadPosRankSum=0.941;SOR=0.593;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:6,59:74:61:1468,61,0
chr2	173861456	rs5010643	G	C	2499.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.01;SOR=3.729;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:714,57,0
chr2	173865976	rs3214814	G	GT	1578.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.94;SOR=1.077;VQSLOD=5.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,51:53:99:1595,167,0
chr2	173866203	rs2028934	C	T	2399.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=4.174;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:758,57,0
chr2	173885052	rs35190971	GC	G	690.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.48;SOR=5.994;VQSLOD=6.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:183,15,0
chr2	174055731	rs2289399	A	G	1716.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=72;ExcessHet=3.9794;FS=1.359;MQ=59.91;MQRankSum=1.04;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=0.358;SOR=0.876;VQSLOD=2.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,24:72:99:611,0,1392
chr2	174062595	rs3754740	A	G	565.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=-6.740e-01;SOR=1.270;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:62:147,0,62
chr2	174068513	rs11899707	G	C	9302.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=1.139;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2197,204,0
chr2	174074353	rs2289398	T	G	711.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=59.46;MQRankSum=0.605;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.38;ReadPosRankSum=-1.063e+00;SOR=0.346;VQSLOD=0.344;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:539,45,0
chr2	174074375	rs2289397	T	C	363.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.330e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-1.380e-01;SOR=1.096;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:163,0,386
chr2	174074407	rs2289396	A	G	1292.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.772;DB;DP=26;ExcessHet=1.5490;FS=1.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=-8.900e-02;SOR=1.325;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:871,78,0
chr2	174085747	rs1371573	C	T	80.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.420e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=0.389;SOR=0.180;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:89:89,0,263
chr2	174085997	rs201188933	T	C	1469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577e+00;DB;DP=93;ExcessHet=3.0103;FS=1.763;MQ=60.00;MQRankSum=0.00;QD=15.80;ReadPosRankSum=0.910;SOR=0.483;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,59:93:99:1478,0,785
chr2	174094129	rs10169914	G	C	1265.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.182e+00;DB;DP=17;ExcessHet=3.0103;FS=2.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=0.272;SOR=0.283;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:626,51,0
chr2	174094145	rs10182247	T	C	607.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391e+00;DB;DP=23;ExcessHet=3.9794;FS=7.996;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.32;SOR=0.124;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:198,0,511
chr2	174094345	rs10193498	A	T	2395.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955e+00;DB;DP=58;ExcessHet=1.5490;FS=0.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=-1.013e+00;SOR=0.599;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,25:58:99:581,0,970
chr2	174094500	rs16861404	G	A	1093.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=46;ExcessHet=3.9794;FS=0.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.462;SOR=0.780;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:455,0,761
chr2	174094651	rs28520717	T	C	145.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-7.120e-01;SOR=0.120;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:101,0,30
chr2	174103366	rs3739102	T	C	1358.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.43;ReadPosRankSum=-2.400e-01;SOR=1.733;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:127,0,141
chr2	174123399	rs820008	A	G	2811.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.32;SOR=2.964;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:528,45,0
chr2	174128513	rs3769148	C	T	5327.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.360e-01;DB;DP=63;ExcessHet=3.0103;FS=0.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=0.383;SOR=0.634;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1899,189,0
chr2	174131511	rs35481842	T	TAAA	847.11	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.71;MQRankSum=-2.240e-01;QD=29.21;ReadPosRankSum=-1.080e-01;SOR=0.560;VQSLOD=2.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:356,30,0
chr2	174223675	rs11675433	C	T	233.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=10;ExcessHet=3.9794;FS=2.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.700;SOR=1.609;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:142,0,162
chr2	174224355	rs10168943	G	A	1304.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=0.601;SOR=1.702;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:200,0,386
chr2	174228418	rs4972555	C	T	1202.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=17;ExcessHet=3.9794;FS=5.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=0.992;SOR=2.387;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:316,0,284
chr2	174228744	rs1529887	T	C	957.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=16;ExcessHet=6.9897;FS=3.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=-1.630e-01;SOR=0.228;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:281,0,152
chr2	174230153	rs2288993	C	G	2381.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=33;ExcessHet=3.9794;FS=5.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=1.23;SOR=1.195;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,11:33:99:305,0,570
chr2	174230974	rs72899215	G	T	612.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.491e+00;DB;DP=23;ExcessHet=3.9794;FS=4.126;MQ=60.00;MQRankSum=0.00;QD=11.13;ReadPosRankSum=0.793;SOR=1.596;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,8:23:99:0|1:174230974_G_T:154,0,633:174230974
chr2	174230983	rs35959156	G	GT	1642.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220e-01;DB;DP=28;ExcessHet=3.9794;FS=3.047;MQ=59.88;MQRankSum=0.00;QD=17.86;ReadPosRankSum=0.410;SOR=0.368;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,18:28:99:1|0:174230974_G_T:438,0,325:174230974
chr2	174232622	rs3210728	C	T	509.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=1.72;SOR=1.828;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:74:105,0,74
chr2	174828618	rs113303834	C	T	132.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=1.15;SOR=0.814;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:141,0,192
chr2	174943876	rs3754812	C	T	683.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.918;SOR=0.770;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:185,0,202
chr2	174946985	rs10930635	T	C	498.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.556e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=2.07;SOR=0.818;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:397,0,221
chr2	174987794	rs34684057	A	G	4272.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119e+00;DB;DP=65;ExcessHet=3.9794;FS=3.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=-1.140e-01;SOR=0.435;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,39:65:99:914,0,690
chr2	175088090	rs10497411	T	C	511.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-2.720e-01;SOR=0.527;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:312,0,197
chr2	175093978	rs12999294	T	C	246.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,3:4:2:116,2,0
chr2	175200127	rs1868600	A	C	666.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.20;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=0.974;SOR=0.976;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:349,24,0
chr2	175213041	rs3192048	T	C	456.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.55;ReadPosRankSum=1.11;SOR=2.049;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr2	175223296	rs4972650	T	A	214.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:148,18,0
chr2	175234490	rs10930659	C	A	399.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=5;ExcessHet=3.9794;FS=3.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=0.732;SOR=0.160;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:196,15,0
chr2	175244649	.	C	A	35.92	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=17.96;SOR=0.693;VQSLOD=11.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	175244756	rs2358666	T	C	987.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=1.765;VQSLOD=18.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:265,24,0
chr2	175264627	.	C	CT	5252.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DP=54;ExcessHet=3.9794;FS=2.078;MQ=59.94;MQRankSum=0.00;QD=31.27;ReadPosRankSum=1.95;SOR=1.051;VQSLOD=5.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,19:54:99:449,0,208
chr2	175292326	rs7591631	C	A	80.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.91;SOR=2.833;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:96,9,0
chr2	175310003	rs35783513	A	G	385.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=4.804;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
chr2	175310029	rs10168192	C	G	407.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.95;ReadPosRankSum=-1.150e+00;SOR=3.611;VQSLOD=17.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:314,24,0
chr2	175311194	rs1562756	T	A	432.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.55;SOR=3.611;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	175311629	rs34770618	T	C	208.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=2.303;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr2	175318387	.	C	CAAAAAAAA	268.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DP=17;ExcessHet=3.9794;FS=0.000;MQ=54.67;MQRankSum=-7.630e-01;QD=10.73;ReadPosRankSum=0.454;SOR=0.982;VQSLOD=0.478;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:17:99:174,0,346
chr2	175335076	rs2358637	G	T	3011.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.48;SOR=5.283;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:579,42,0
chr2	175427562	.	TAA	T	40.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602e+00;DP=11;ExcessHet=3.0103;FS=4.616;MQ=60.00;MQRankSum=0.00;QD=3.66;ReadPosRankSum=-8.420e-01;SOR=0.048;VQSLOD=4.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,2:11:49:49,0,324
chr2	175431990	rs143689509	AAGAG	A	1123.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.310e-01;DB;DP=12;ExcessHet=1.5490;FS=1.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.38;ReadPosRankSum=0.472;SOR=0.437;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:540,36,0
chr2	175436940	rs4972450	G	A	11342.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=0.919;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3907,380,0
chr2	175439512	rs1367218	T	C	4571.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=1.398;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1174,111,0
chr2	175613115	rs2255918	G	A	2354.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=34;ExcessHet=3.0103;FS=3.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.60;ReadPosRankSum=-1.315e+00;SOR=1.199;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1204,102,0
chr2	175613169	rs2305414	A	C	2955.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.78;DB;DP=49;ExcessHet=3.9794;FS=1.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=0.752;SOR=0.916;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1612,147,0
chr2	175613600	rs2646159	T	C	2266.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.80;SOR=5.136;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:669,48,0
chr2	175614908	.	CAAA	C,CA	6803.50	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.055;DP=78;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=0.160;SOR=1.171;VQSLOD=7.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,10,59:78:63:2339,1439,1319,280,0,63
chr2	175622178	rs11327107	TG	T	1196.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=-5.520e-01;SOR=0.871;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:500,42,0
chr2	175622788	rs2646164	G	A	3747.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.589;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1445,138,0
chr2	175622907	rs2600687	T	C	1217.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=2.494;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:412,39,0
chr2	175624107	rs34695580	GA	G	5085.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=107;ExcessHet=3.9794;FS=0.997;MQ=60.00;MQRankSum=0.00;QD=18.23;ReadPosRankSum=0.302;SOR=0.795;VQSLOD=6.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3212,322,0
chr2	175624597	rs1376865	G	A	350.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=3.258;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	175628847	rs2600684	T	C	1402.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.76;SOR=4.977;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:365,30,0
chr2	175629021	rs7560774	C	A	4381.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.399e+00;DB;DP=69;ExcessHet=3.9794;FS=0.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=1.37;SOR=0.747;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2190,207,0
chr2	175665215	rs2600673	A	G	417.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.88;SOR=2.494;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr2	175666656	rs2646153	G	A	1869.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=4.935;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:651,57,0
chr2	175711942	rs14228	C	T	3200.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=2.400;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:885,81,0
chr2	175783014	rs6433509	C	T	579.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=5.670;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr2	175817071	rs145037630	G	GTT	87.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.58;ReadPosRankSum=0.189;SOR=0.693;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:95:96,0,95
chr2	175991852	rs2698546	A	G	339.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.23;SOR=1.402;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr2	176044136	rs268224	A	T	791.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=3.258;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:298,27,0
chr2	176045832	rs268226	C	A	7102.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=9.055;VQSLOD=24.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1628,125,0
chr2	176046257	rs268227	C	T	3734.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=5.762;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1040,75,0
chr2	176795003	rs144394857	AACACACACACACACACACACACAC	A,AACACACAC	670.56	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.36;MQRankSum=0.00;QD=27.14;SOR=2.948;VQSLOD=4.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,4,2:6:85:251,85,114,166,0,159
chr2	176804220	rs138833018	T	TAC	1363.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=65;ExcessHet=3.9794;FS=1.693;MQ=60.00;MQRankSum=0.00;QD=12.06;ReadPosRankSum=1.11;SOR=0.891;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,22:65:99:659,0,1422
chr2	176844508	rs77165351	A	T	805.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.302;SOR=0.793;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:88:184,0,88
chr2	176844644	rs12373766	C	T	1154.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DB;DP=36;ExcessHet=3.9794;FS=0.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=0.485;SOR=0.809;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,13:36:99:262,0,490
chr2	176857275	rs2885117	T	C	241.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.16;SOR=3.912;VQSLOD=19.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr2	176866756	rs79273881	G	A	552.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.570e-01;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-5.100e-01;SOR=0.719;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:561,0,436
chr2	176866967	rs935492	C	T	2693.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534e+00;DB;DP=104;ExcessHet=3.9794;FS=2.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.224;SOR=0.517;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,67:104:99:1625,0,1001
chr2	176957822	rs2518053	G	A	5383.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=235;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.58;ReadPosRankSum=0.672;SOR=0.688;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:122,113:235:99:2911,0,3124
chr2	176959113	rs71004256	GCA	G	180.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=9;ExcessHet=3.9794;FS=3.796;MQ=60.00;MQRankSum=0.00;QD=5.31;ReadPosRankSum=-6.070e-01;SOR=0.089;VQSLOD=5.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,2:9:38:38,0,195
chr2	176988290	rs56007470	C	CGCA	7208.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DB;DP=131;ExcessHet=6.9897;FS=1.720;MQ=60.00;MQRankSum=0.00;QD=16.61;ReadPosRankSum=-3.080e-01;SOR=0.758;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:68,63:131:99:2414,0,2948
chr2	176989023	rs711822	C	T	1352.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.520e-01;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=-8.220e-01;SOR=0.590;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:421,0,210
chr2	176995902	rs10624365	C	CTA	182.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=3;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;QD=18.28;ReadPosRankSum=0.484;SOR=0.105;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:29:67,0,29
chr2	176996023	rs4972804	C	T	1061.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=18;ExcessHet=6.9897;FS=3.777;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.872;SOR=1.280;VQSLOD=6.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,8:18:99:0|1:176996023_C_T:241,0,277:176996023
chr2	177014970	rs1867863	G	T	892.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=0.068;SOR=0.724;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,9:31:99:237,0,634
chr2	177015349	.	A	G	57.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.55;ReadPosRankSum=0.842;SOR=1.179;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,150
chr2	177036211	rs2857535	G	A	6115.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=92;ExcessHet=1.5490;FS=5.284;MQ=59.97;MQRankSum=1.16;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=0.591;SOR=0.394;VQSLOD=1.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,52:92:99:1313,0,885
chr2	177036754	rs1051929	T	C	39721.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DB;DP=690;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=-7.380e-01;SOR=0.723;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:314,376:690:99:9536,0,8211
chr2	177466144	rs986932	G	T	322.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.02;SOR=4.407;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	177497490	rs2969362	C	T	1667.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.53;SOR=7.378;VQSLOD=23.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:513,36,0
chr2	177497614	rs2922313	A	G	6551.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.082;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.60;ReadPosRankSum=0.840;SOR=0.946;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1760,150,0
chr2	177497751	rs2922314	G	A	10356.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=1.026;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3503,367,0
chr2	177497817	rs2969361	A	C	6900.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.16;SOR=1.871;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2362,221,0
chr2	178092502	rs67973222	A	G	1307.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.992e+00;DB;DP=99;ExcessHet=3.0103;FS=0.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-2.080e-01;SOR=0.608;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,55:99:99:1316,0,1091
chr2	178092691	.	CAA	C	149.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.57;MQRankSum=0.00;QD=8.79;ReadPosRankSum=-1.000e-02;SOR=1.061;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:53:113,0,53
chr2	178121005	rs13028464	C	T	202.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=0.291;SOR=0.836;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:105,0,155
chr2	178178448	rs114805834	T	A	921.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DB;DP=71;ExcessHet=3.0103;FS=4.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-1.375e+00;SOR=0.961;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,36:71:99:930,0,886
chr2	178178466	rs1453376	T	C	5664.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=64;ExcessHet=3.0103;FS=2.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=-1.290e+00;SOR=0.867;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:911,0,797
chr2	178257391	rs113671272	G	A	252.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.80;MQRankSum=0.967;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=-5.450e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:25:114,0,25
chr2	178301428	rs3754989	C	T	4475.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.304e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=-1.140e-01;SOR=0.888;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1409,135,0
chr2	178305437	rs6732250	A	G	189	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=-1.036e+00;SOR=1.863;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr2	178307330	rs4893951	C	T	780.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=0.816;SOR=1.609;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:149,0,152
chr2	178326476	rs56895184	CT	C	282.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.76;ReadPosRankSum=0.439;SOR=0.976;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:51:51,0,70
chr2	178326838	rs1979059	C	G	1155.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=5.211;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:345,24,0
chr2	178346654	rs140823121	GCCATTATTCC	G	546.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=0.908;SOR=0.340;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:194,0,584
chr2	178358072	rs1348849	C	T	2877.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729e+00;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=-6.400e-02;SOR=0.797;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,25:42:99:666,0,480
chr2	178358233	rs1348848	G	T	322.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=4.407;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr2	178362572	rs12468046	G	A	3477.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=1.386;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1087,113,0
chr2	178378452	rs2364854	T	A	939.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.33;ReadPosRankSum=-1.679e+00;SOR=2.621;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:208,0,204
chr2	178417142	rs11694988	C	T	26287.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.617;DB;DP=328;ExcessHet=3.0103;FS=0.714;MQ=59.91;MQRankSum=-9.940e-01;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=-6.170e-01;SOR=0.737;VQSLOD=2.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:164,164:328:99:4227,0,4264
chr2	178417225	rs11695035	C	T	18322.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940e+00;DB;DP=227;ExcessHet=3.0103;FS=2.491;MQ=57.81;MQRankSum=-2.065e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.68;ReadPosRankSum=0.924;SOR=0.467;VQSLOD=-4.931e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:108,119:227:99:3247,0,3259
chr2	178481818	rs10497497	G	T	16795.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DB;DP=208;ExcessHet=3.0103;FS=0.711;MQ=52.97;MQRankSum=-7.695e+00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=2.53;SOR=0.569;VQSLOD=-3.943e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:114,94:208:99:2157,0,2921
chr2	178482594	rs61742858	G	T	5000.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637e+00;DB;DP=401;ExcessHet=3.0103;FS=1.100;MQ=58.66;MQRankSum=-6.920e-01;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.062;SOR=0.594;VQSLOD=0.525;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:207,194:401:99:5009,0,5395
chr2	178494012	rs6734683	C	G	306.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=2.19;SOR=0.941;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:78:80,0,78
chr2	178494173	rs3830637	G	GGGA	3146.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953e+00;DB;DP=64;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.14;ReadPosRankSum=-1.612e+00;SOR=0.656;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,29:64:99:1200,0,1600
chr2	178528351	rs3770003	T	C	687.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=7.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.78;ReadPosRankSum=0.319;SOR=4.615;VQSLOD=12.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,1:4:72:0|1:178528351_T_C:72,0,211:178528351
chr2	178528360	rs1544003	A	G	803.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=7;ExcessHet=3.0103;FS=16.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.94;ReadPosRankSum=-6.520e-01;SOR=5.994;VQSLOD=10.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:178528351_T_C:101,0,229:178528351
chr2	178528703	rs13025391	C	T	6312.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e-01;DB;DP=55;ExcessHet=3.0103;FS=3.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=0.198;SOR=0.892;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,22:55:99:538,0,875
chr2	178528789	rs13025904	G	A	3641.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=1.09;SOR=0.784;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,16:48:99:366,0,815
chr2	178528874	rs3770005	T	C	519.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.76;ReadPosRankSum=1.50;SOR=1.230;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:99:99,0,303
chr2	178534110	rs2222711	G	T	851.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.08;ReadPosRankSum=-1.890e-01;SOR=1.402;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,116
chr2	178534324	rs6433687	A	G	4622.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DB;DP=56;ExcessHet=3.0103;FS=0.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=-9.690e-01;SOR=0.597;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,24:56:99:553,0,771
chr2	178534534	rs1358327	G	C	383.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.84;ReadPosRankSum=0.967;SOR=3.442;VQSLOD=18.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:78,0,35
chr2	178540293	rs3770016	A	G	3360.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321e+00;DB;DP=59;ExcessHet=3.0103;FS=2.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=-9.030e-01;SOR=0.494;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,29:59:99:655,0,758
chr2	178545403	rs2886423	T	C	1099.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=1.24;SOR=4.479;VQSLOD=13.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:54:216,0,54
chr2	178545713	rs4538242	C	T	4091.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.77;SOR=1.940;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1259,108,0
chr2	178561865	rs2365623	T	C	2016.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=7.784;VQSLOD=24.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:614,45,0
chr2	178561947	rs2886424	G	C	3949.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513e+00;DB;DP=56;ExcessHet=3.9794;FS=0.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=1.73;SOR=0.590;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:900,0,750
chr2	178565815	rs10201180	T	C	3954.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DB;DP=77;ExcessHet=3.9794;FS=2.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=2.60;SOR=0.872;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,34:77:99:809,0,1077
chr2	178576681	rs13428806	G	A	631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=0.640;SOR=1.143;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:92:215,0,92
chr2	178633945	rs34543540	A	C	1266.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=51;ExcessHet=3.9794;FS=0.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=1.64;SOR=0.798;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:719,0,557
chr2	178681447	rs6433697	C	A	387.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=0.586;SOR=0.430;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:396,0,275
chr2	178681534	rs6433698	C	T	400.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=40;ExcessHet=3.0103;FS=2.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=-9.810e-01;SOR=0.363;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,16:40:99:409,0,647
chr2	178681716	rs1438059	G	C	2662.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030e-01;DB;DP=34;ExcessHet=3.0103;FS=1.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.85;ReadPosRankSum=0.794;SOR=1.006;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:432,0,399
chr2	178682558	rs3841879	A	ATATAAAC	959.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=0.438;SOR=0.610;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,23:50:99:968,0,1466
chr2	178682603	rs6720891	T	C	886.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-2.073e+00;SOR=0.737;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,37:71:99:895,0,829
chr2	178682655	rs3821010	A	G	807.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DB;DP=68;ExcessHet=3.0103;FS=1.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.571;SOR=0.487;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,35:68:99:816,0,709
chr2	178684799	rs7581861	T	C	119.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=-4.460e-01;SOR=1.508;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:128,0,287
chr2	178684820	rs41440047	G	A	227.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=19;ExcessHet=3.0103;FS=2.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-1.268e+00;SOR=1.751;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:236,0,425
chr2	178684878	rs144786387	A	AAG	751.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528e+00;DB;DP=36;ExcessHet=3.0103;FS=1.366;MQ=59.42;MQRankSum=-8.900e-01;QD=20.87;ReadPosRankSum=-1.538e+00;SOR=1.136;VQSLOD=0.157;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,19:36:99:0|1:178684878_A_AAG:760,0,747:178684878
chr2	178684879	rs58796031	T	G	751.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320e-01;DB;DP=38;ExcessHet=3.0103;FS=1.303;MQ=59.43;MQRankSum=-8.960e-01;QD=19.77;ReadPosRankSum=-1.317e+00;SOR=1.115;VQSLOD=-9.551e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,20:38:99:0|1:178684878_A_AAG:760,0,747:178684878
chr2	178684921	rs13386827	G	A	429.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.690e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=2.07;SOR=0.551;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:438,0,526
chr2	178685129	rs13386870	C	T	99.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=2.19;SOR=0.495;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:108,0,142
chr2	178705254	rs72948809	G	A	195.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-7.900e-02;SOR=0.693;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:204,0,203
chr2	178769992	rs2695096	T	C	2293.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.61;SOR=3.150;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:567,57,0
chr2	178878845	rs11695452	A	T	131.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=-1.800e-01;SOR=0.941;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:140,0,108
chr2	178936373	rs1435573	T	G	12233.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=1.071;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3586,306,0
chr2	178936614	rs6433711	C	T	22621.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.51;SOR=0.926;VQSLOD=3.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,219:219:99:7068,657,0
chr2	178937010	rs77972073	C	G	2211.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970e+00;DB;DP=178;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.42;ReadPosRankSum=0.579;SOR=0.693;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,89:178:99:2220,0,2349
chr2	178969039	rs75672043	G	A	735.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e+00;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-8.810e-01;SOR=0.662;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,32:54:99:744,0,544
chr2	178986130	rs56871232	TACACAC	T	631.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.36;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:136,9,0
chr2	178990941	rs56809827	CAT	C	967.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=16;ExcessHet=3.9794;FS=3.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=-1.248e+00;SOR=1.532;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:267,0,362
chr2	179203797	rs1434087	G	A	9419.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-7.200e-02;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=1.34;SOR=0.857;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3105,300,0
chr2	179209394	rs11403509	G	GT	97.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.43;SOR=3.258;VQSLOD=5.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:114,12,0
chr2	179238507	rs7595571	T	C	4859.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.572e+00;DB;DP=68;ExcessHet=3.9794;FS=1.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=1.34;SOR=0.557;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,40:68:99:1097,0,788
chr2	179238866	rs36060642	A	G	1118.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.33;DB;DP=32;ExcessHet=3.9794;FS=2.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-5.800e-02;SOR=1.179;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:588,0,387
chr2	179260382	rs2304340	A	G	1225.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=17;ExcessHet=3.9794;FS=7.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=-3.180e-01;SOR=1.828;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:602,51,0
chr2	179260653	rs34253857	A	G	522.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.541e+00;DB;DP=65;ExcessHet=3.0103;FS=7.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-4.960e-01;SOR=0.205;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,26:65:99:531,0,1031
chr2	179296626	rs3997878	G	A	312.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.21;ReadPosRankSum=2.11;SOR=1.214;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:69:150,0,69
chr2	179296666	rs3997877	T	C	531.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744e+00;DB;DP=15;ExcessHet=6.9897;FS=2.171;MQ=60.00;MQRankSum=0.00;QD=9.33;ReadPosRankSum=0.177;SOR=0.246;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:196,0,205
chr2	179296821	rs3997876	G	A	4202.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.156e+00;DB;DP=129;ExcessHet=6.9897;FS=1.948;MQ=60.00;MQRankSum=0.00;QD=9.47;ReadPosRankSum=-6.500e-02;SOR=0.912;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,44:129:99:1114,0,2325
chr2	179300971	rs62176107	G	A	4125.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=148;ExcessHet=6.9897;FS=1.144;MQ=59.98;MQRankSum=0.00;QD=9.57;ReadPosRankSum=-1.595e+00;SOR=0.591;VQSLOD=3.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,58:148:99:1410,0,2291
chr2	179306397	rs61746229	A	G	2479.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.96;DB;DP=167;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.86;ReadPosRankSum=2.93;SOR=0.683;VQSLOD=20.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:131,36:167:99:806,0,3305
chr2	179315031	rs61999302	T	C	4988.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;DB;DP=252;ExcessHet=6.9897;FS=9.502;MQ=60.00;MQRankSum=0.00;QD=6.23;ReadPosRankSum=1.68;SOR=1.105;VQSLOD=17.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,86:252:99:1975,0,4483
chr2	179315781	rs62176113	C	T	511.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020e-01;DB;DP=69;ExcessHet=6.9897;FS=8.130;MQ=60.00;MQRankSum=0.00;QD=2.28;ReadPosRankSum=1.64;SOR=1.361;VQSLOD=18.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,8:69:24:24,0,1621
chr2	179315890	rs80197731	G	C	251.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.340e-01;DB;DP=20;ExcessHet=3.9794;FS=1.640;MQ=60.00;MQRankSum=0.00;QD=4.74;ReadPosRankSum=-1.803e+00;SOR=0.273;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,4:20:92:92,0,543
chr2	179315906	.	A	G	152.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DP=14;ExcessHet=3.0103;FS=2.963;MQ=60.00;MQRankSum=0.00;QD=10.88;ReadPosRankSum=0.257;SOR=1.802;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:161,0,269
chr2	179325735	rs17304212	C	T	1081.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DB;DP=105;ExcessHet=3.0103;FS=1.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-4.060e-01;SOR=0.859;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,44:105:99:1090,0,1534
chr2	179337628	rs202059949	GT	G	57.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085e+00;DB;DP=9;ExcessHet=6.9897;FS=2.900;MQ=60.00;MQRankSum=0.00;QD=2.31;ReadPosRankSum=0.366;SOR=0.163;VQSLOD=5.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:9:22:22,0,145
chr2	179355737	.	CT	C	73.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DP=5;ExcessHet=3.9794;FS=2.632;MQ=60.00;MQRankSum=0.00;QD=6.65;ReadPosRankSum=1.28;SOR=1.981;VQSLOD=4.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:32:32,0,37
chr2	179360532	.	G	C	363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.51;ReadPosRankSum=-1.413e+00;SOR=0.191;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:372,0,371
chr2	179363685	rs2249737	C	T	71.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=2.303;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	179363807	rs3214536	A	AT	1075.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=1.91;SOR=0.839;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:543,57,0
chr2	179363909	rs371719002	AT	A	1067.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.740e-01;DB;DP=92;ExcessHet=3.9794;FS=7.109;MQ=60.00;MQRankSum=0.00;QD=6.55;ReadPosRankSum=2.08;SOR=0.341;VQSLOD=3.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:73,11:92:11:11,0,1607
chr2	179395067	rs56207956	C	G	1001.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=114;ExcessHet=3.0103;FS=4.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=-7.060e-01;SOR=0.466;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,41:114:99:1010,0,1863
chr2	179400585	.	GA	G	109.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DP=55;ExcessHet=3.0103;FS=0.689;MQ=59.97;MQRankSum=0.00;QD=2.19;ReadPosRankSum=0.110;SOR=0.792;VQSLOD=5.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,13:55:99:118,0,860
chr2	179412453	rs200173934	G	A	1172.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=159;ExcessHet=3.0103;FS=3.959;MQ=60.00;MQRankSum=0.00;QD=7.37;ReadPosRankSum=1.49;SOR=1.016;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,52:159:99:1181,0,2745
chr2	179432185	rs12463674	A	G	1700.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=129;ExcessHet=3.0103;FS=1.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-3.060e-01;SOR=0.542;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,67:129:99:1709,0,1334
chr2	179440029	rs12464787	G	A	1869.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e+00;DB;DP=168;ExcessHet=3.0103;FS=0.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=0.105;SOR=0.608;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,80:168:99:1878,0,2323
chr2	179444768	rs4145333	C	G	12960.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.06;SOR=0.857;VQSLOD=4.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3597,342,0
chr2	179460214	rs376680679	AT	A	478.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990e-01;DB;DP=36;ExcessHet=6.9897;FS=8.788;MQ=60.00;MQRankSum=0.00;QD=4.31;ReadPosRankSum=0.037;SOR=0.204;VQSLOD=3.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,5:36:26:26,0,683
chr2	179462494	rs35833641	A	G	1042.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.296;SOR=0.743;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:1051,0,905
chr2	179482347	rs374043002	CTAAG	C	186.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DB;DP=22;ExcessHet=3.0103;FS=2.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=0.185;SOR=1.536;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,6:22:99:195,0,924
chr2	179497133	rs56034831	C	T	1008.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.360e-01;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-3.550e-01;SOR=0.599;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1017,0,1006
chr2	179497805	.	A	G	948.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.35;ReadPosRankSum=-3.130e-01;SOR=0.765;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,32:58:99:957,0,776
chr2	179506790	rs57200316	A	T	102.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.13;SOR=2.833;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:12:119,12,0
chr2	179511462	.	TATTA	T	114.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.57;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:28:123,0,28
chr2	179513801	rs1469473	C	T	765.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.32;SOR=5.994;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr2	179517748	.	C	A	844.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DP=73;ExcessHet=3.0103;FS=1.916;MQ=60.00;MQRankSum=0.00;QD=11.57;ReadPosRankSum=2.37;SOR=0.489;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,33:73:99:853,0,1033
chr2	179518911	rs139167585	TAGC	T	2286.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.587e+00;DB;DP=111;ExcessHet=3.0103;FS=8.905;MQ=59.29;MQRankSum=-8.850e-01;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=-8.200e-01;SOR=0.781;VQSLOD=0.248;culprit=FS	GT:AD:DP:GQ:PL	0/1:51,60:111:99:2295,0,2486
chr2	179532113	.	T	C	1020.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.635e+00;DP=103;ExcessHet=3.0103;FS=2.549;MQ=60.00;MQRankSum=0.00;QD=9.91;ReadPosRankSum=0.988;SOR=0.564;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,45:103:99:1029,0,1581
chr2	179541899	rs2742351	C	G	3316.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.729;DB;DP=61;ExcessHet=3.9794;FS=3.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=-9.200e-02;SOR=0.927;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1850,183,0
chr2	179545859	rs36051007	C	T	1131.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=80;ExcessHet=3.0103;FS=0.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.12;SOR=0.571;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1140,0,991
chr2	179548695	rs372078760	AT	A	135.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.79;MQRankSum=0.00;QD=3.22;ReadPosRankSum=-9.850e-01;SOR=0.718;VQSLOD=5.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:36:36,0,353
chr2	179553730	.	AT	A	524.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.000e+00;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.65;ReadPosRankSum=-6.370e-01;SOR=0.631;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,14:16:17:204,17,0
chr2	179554305	rs2244492	C	T	2264.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.084e+00;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=-7.010e-01;SOR=0.653;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,20:32:99:601,0,303
chr2	179563643	rs368277751	TA	T	169.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.210e-01;DB;DP=50;ExcessHet=6.9897;FS=3.288;MQ=59.87;MQRankSum=0.00;QD=0.96;ReadPosRankSum=0.169;SOR=1.019;VQSLOD=4.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,10:50:99:108,0,777
chr2	179566038	rs16866440	C	T	614.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.41;DB;DP=29;ExcessHet=3.0103;FS=8.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=1.27;SOR=0.093;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,16:29:99:0|1:179566038_C_T:623,0,835:179566038
chr2	179566051	rs66521408	C	T	653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.98;DB;DP=30;ExcessHet=3.0103;FS=5.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=1.54;SOR=0.188;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,16:30:99:0|1:179566038_C_T:662,0,835:179566038
chr2	179566146	rs2251987	T	G	6092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.22;SOR=1.872;VQSLOD=18.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1908,159,0
chr2	179585266	rs2562831	C	T	5428.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.09;SOR=1.319;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1820,153,0
chr2	179600563	rs2742348	G	A	8049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=1.072;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2424,219,0
chr2	179614952	rs10803917	A	G	11147.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=0.776;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3313,291,0
chr2	179615887	rs922984	T	C	7045.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.59;DB;DP=95;ExcessHet=3.9794;FS=3.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=1.01;SOR=0.867;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3117,284,0
chr2	179615931	rs922985	C	G	14284.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=0.872;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3462,300,0
chr2	179615994	rs922986	T	C	15155.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=0.795;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:3964,407,0
chr2	179616770	rs58651353	GA	G	522.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.700;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=-2.000e-01;SOR=0.649;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,19:25:24:484,24,0
chr2	179618019	rs3754953	T	A	599.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.97;DB;DP=7;ExcessHet=3.9794;FS=4.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.542;SOR=0.187;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:222,21,0
chr2	179620951	rs7585334	C	T	3447.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.802;DB;DP=61;ExcessHet=3.9794;FS=0.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=1.78;SOR=0.754;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1845,183,0
chr2	179621477	rs6433728	C	T	6843.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=1.396;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2308,219,0
chr2	179623758	rs2291310	C	T	4360.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.238;DB;DP=68;ExcessHet=3.9794;FS=0.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=1.21;SOR=0.635;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2110,204,0
chr2	179623939	rs6705594	T	C	4113.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=33.17;SOR=2.265;VQSLOD=5.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,32:32:96:965,96,0
chr2	179628661	rs35168948	A	AT	114.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.81;ReadPosRankSum=0.674;SOR=1.179;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:179628661_A_AT:45,3,0:179628661
chr2	179628680	rs1484119	G	C	292.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=-1.150e+00;SOR=1.802;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:179628661_A_AT:121,9,0:179628661
chr2	179629363	rs4894043	T	C	12817.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=0.771;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4370,423,0
chr2	179629461	rs2291311	C	T	5631.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=104;ExcessHet=3.9794;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.349;SOR=0.897;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3235,312,0
chr2	179632710	rs2291313	T	C	6006.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=99;ExcessHet=3.9794;FS=5.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=0.860;SOR=0.470;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3260,297,0
chr2	179633298	rs4471922	G	T	1890.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.934e+00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=0.049;SOR=0.480;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1046,84,0
chr2	179634376	rs10596477	GTA	G	2575.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=4.468;VQSLOD=6.75;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:582,48,0
chr2	179635789	rs4893854	A	T	982.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=3.014;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:279,21,0
chr2	179635882	rs4894047	C	T	2773.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.38;SOR=3.442;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1142,90,0
chr2	179639297	rs3816781	C	T	1566.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.11;SOR=6.043;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:395,30,0
chr2	179639498	rs4894049	C	G	484.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.28;SOR=3.611;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr2	179642425	rs719201	G	A	8878.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.94;SOR=0.865;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2953,297,0
chr2	179642925	rs7570526	T	C	160.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.28;SOR=1.981;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	179643886	rs2291302	A	G	9333.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.19;SOR=0.735;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2775,273,0
chr2	179643934	rs2291301	A	G	10001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.12;SOR=0.879;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2972,285,0
chr2	179644035	rs1552280	G	A	9774.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=30.93;SOR=0.994;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3063,297,0
chr2	179644304	rs2035496	G	A	377.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=4.615;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr2	179644855	rs10497520	T	C	5431.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.93;DB;DP=93;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=-6.510e-01;SOR=0.671;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2792,279,0
chr2	179645106	rs12693168	A	T	631.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=5.670;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	179645577	rs2054708	C	T	507.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.21;ReadPosRankSum=1.83;SOR=1.863;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:255,18,0
chr2	179650701	rs6715406	C	T	1722.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=143;ExcessHet=3.0103;FS=5.001;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-1.246e+00;SOR=1.005;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,71:143:99:1731,0,1780
chr2	179650954	rs6715901	G	A	353.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=40;ExcessHet=3.0103;FS=1.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=1.96;SOR=0.467;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,15:40:99:362,0,664
chr2	179664050	rs66733621	A	G	243.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.091;SOR=0.368;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:252,0,406
chr2	179664840	rs900772	T	C	1529.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=3.312;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:348,27,0
chr2	179666830	rs68003004	G	A	713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.743e+00;DB;DP=47;ExcessHet=3.0103;FS=1.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.503;SOR=0.336;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:722,0,652
chr2	179667090	rs3816849	C	T	2621.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.725e+00;DB;DP=61;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-1.720e-01;SOR=0.655;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,33:61:99:887,0,777
chr2	179682520	rs146431866	T	TCCTC	111.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.39;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:98:120,0,98
chr2	179702268	rs1032283	A	G	17607.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.73;SOR=0.754;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:5171,434,0
chr2	179702577	rs3045731	A	AGG	1661.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=-4.230e-01;SOR=1.127;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:267,0,320
chr2	179702610	rs2078403	C	T	893.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=0.269;SOR=1.329;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:238,0,224
chr2	179710706	rs6433738	A	G	369.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=38.15;ReadPosRankSum=0.967;SOR=3.258;VQSLOD=18.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:1,2:3:32:78,0,32
chr2	179714675	rs4894055	C	T	686.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=0.619;SOR=2.400;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:87:212,0,87
chr2	179721046	rs17362588	G	A	1178.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DB;DP=90;ExcessHet=3.0103;FS=0.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.505;SOR=0.871;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1187,0,1077
chr2	179732980	rs10165177	A	G	1429.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=28;ExcessHet=6.9897;FS=4.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.669;SOR=1.306;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,15:28:99:0|1:179732978_C_T:497,0,298:179732978
chr2	179734144	rs80271311	C	T	115.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.51;SOR=2.833;VQSLOD=20.89;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	179735946	rs1565287	A	G	193.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:60:78,0,60
chr2	179736006	rs6731864	T	G	90.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.21;ReadPosRankSum=0.577;SOR=0.180;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:99:99,0,327
chr2	179736012	rs4637162	T	C	471.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.295;SOR=0.941;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:322,0,133
chr2	179737144	rs12693170	C	A	849.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.20;DB;DP=21;ExcessHet=3.9794;FS=3.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=0.463;SOR=1.828;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:451,0,251
chr2	179753245	rs7573293	C	T	4579.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=-5.550e-01;SOR=0.678;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:575,0,740
chr2	179753549	rs1873164	G	A	2589.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.580e-01;DB;DP=31;ExcessHet=3.9794;FS=4.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.356;SOR=1.361;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:493,0,431
chr2	179770340	rs114829390	A	G	144.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=3.258;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr2	179783696	rs12467323	C	A	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.503e+00;DB;DP=28;ExcessHet=3.0103;FS=5.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.646;SOR=0.126;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:363,0,521
chr2	179809500	rs9677932	C	T	1627.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=2.448;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:483,48,0
chr2	179825838	rs11303440	TG	T	789.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.94;ReadPosRankSum=0.593;SOR=0.836;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,25:44:99:798,0,550
chr2	179826241	rs6725028	A	G	249.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.010e-01;DB;DP=19;ExcessHet=3.0103;FS=3.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.165;SOR=2.115;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:258,0,329
chr2	179843612	rs1847420	G	A	2820.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=18;ExcessHet=3.0103;FS=1.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=-2.670e-01;SOR=1.179;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:289,0,175
chr2	179979930	rs2289993	T	C	936.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990e-01;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.535;SOR=0.737;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,40:79:99:945,0,956
chr2	179980070	rs2044479	G	A	595.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.882;SOR=0.693;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:92:220,0,92
chr2	179982125	rs3217565	AAGAT	A	198.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.04;ReadPosRankSum=0.674;SOR=2.303;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:44:207,0,44
chr2	179988395	rs5836671	T	TA	1771.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=0.695;SOR=1.305;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:72:624,72,0
chr2	179989039	rs2289992	G	A	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247e+00;DB;DP=31;ExcessHet=3.0103;FS=2.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=-2.996e+00;SOR=1.286;VQSLOD=22.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,11:31:99:324,0,628
chr2	179997177	rs3214766	AT	A	368.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004e+00;DB;DP=23;ExcessHet=3.0103;FS=9.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.95;SOR=0.027;VQSLOD=4.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:377,0,215
chr2	180039068	rs13013868	C	T	3870.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.291e+00;DB;DP=74;ExcessHet=3.9794;FS=3.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=1.18;SOR=1.000;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2463,221,0
chr2	180047746	rs1446673	G	C	4625.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.010e-01;DB;DP=84;ExcessHet=3.9794;FS=8.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=0.244;SOR=0.353;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2525,252,0
chr2	180047908	rs6757681	T	C	5667.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.36;DB;DP=103;ExcessHet=3.9794;FS=1.507;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=-5.140e-01;SOR=0.593;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3063,307,0
chr2	180048071	rs12693176	T	C	150.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=-1.282e+00;SOR=0.693;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	180056341	rs12693178	G	A	393.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.78;ReadPosRankSum=-8.420e-01;SOR=2.670;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:252,18,0
chr2	180307879	rs5836680	TG	T	49.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:23:55,0,23
chr2	180308335	rs10171283	C	G	729.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.945e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=-1.830e-01;SOR=0.430;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:223,0,146
chr2	180310604	rs12623873	C	T	441.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=-1.890e-01;SOR=1.230;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:94:99,0,94
chr2	180311207	rs2271760	G	A	760.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.678e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.767;SOR=0.546;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:245,0,302
chr2	180348245	rs2271759	T	G	270.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=1.82;SOR=0.392;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:65:65,0,134
chr2	180383498	rs4567894	C	A	1738.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.46;SOR=4.758;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:668,54,0
chr2	180725310	rs2170240	T	C	298.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=1.609;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:175,15,0
chr2	180725481	rs259816	T	C	2689.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=1.312;VQSLOD=19.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:960,96,0
chr2	180810180	rs6433817	C	T	6947.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860e-01;DB;DP=139;ExcessHet=6.9897;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.900;SOR=0.752;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,83:139:99:2300,0,1404
chr2	180810264	rs6433818	A	T	18181.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.73;DB;DP=178;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.45;ReadPosRankSum=-1.610e+00;SOR=0.694;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,98:178:99:2841,0,1883
chr2	180815528	rs2304858	A	T	2303.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=49;ExcessHet=6.9897;FS=1.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-3.000e-02;SOR=0.823;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:667,0,660
chr2	180819182	rs76687961	G	A	48.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.03;ReadPosRankSum=1.61;SOR=0.169;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:57:57,0,231
chr2	180823590	rs10497553	C	T	489.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=-7.800e-02;SOR=1.179;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:53:53,0,271
chr2	180830958	rs6733426	A	G	2162.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=22;ExcessHet=3.0103;FS=3.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.90;ReadPosRankSum=-6.490e-01;SOR=2.062;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:227,0,473
chr2	180835589	rs4894140	A	G	9101.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.61;SOR=0.783;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2190,194,0
chr2	180835792	rs3768837	T	A	8108.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=72;ExcessHet=3.0103;FS=1.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=1.21;SOR=0.551;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,36:72:99:974,0,963
chr2	180837806	rs6433821	T	A	5694.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-01;DB;DP=51;ExcessHet=3.0103;FS=0.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=-9.230e-01;SOR=0.902;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:551,0,767
chr2	180843126	rs2367990	C	T	2436.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.237e+00;DB;DP=23;ExcessHet=3.0103;FS=1.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.85;ReadPosRankSum=-1.136e+00;SOR=1.360;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:280,0,441
chr2	180846743	rs3738943	G	T	5452.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.260e-01;DB;DP=46;ExcessHet=3.0103;FS=3.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.25;ReadPosRankSum=0.264;SOR=1.227;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:620,0,619
chr2	181925588	.	CTTTTTTTTTT	C,CTTTTTTTT	1247.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.381;DP=30;ExcessHet=1.5490;FS=2.918;MQ=59.85;MQRankSum=0.00;QD=23.54;ReadPosRankSum=2.64;SOR=1.251;VQSLOD=4.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:1,7,8:30:99:627,146,560,496,0,480
chr2	181927310	rs56270937	AT	A	335.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.89;ReadPosRankSum=-9.520e-01;SOR=1.022;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:111,0,111
chr2	182343278	rs155095	A	G	130.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=3.258;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
chr2	182344846	rs11412304	G	GT	1981.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.060e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=27.52;ReadPosRankSum=0.683;SOR=0.414;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:665,72,0
chr2	182346954	rs155098	C	T	1056.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.96;SOR=6.593;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr2	182350447	rs155102	A	G	573.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=13;ExcessHet=3.9794;FS=4.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=3.000e-03;SOR=2.726;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,12:13:2:452,0,2
chr2	182350743	rs155103	A	G	9061.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.72;SOR=2.087;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2671,237,0
chr2	182359165	rs149724	C	T	392.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.79;SOR=4.804;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	182359592	rs16867434	T	C	741.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=37;ExcessHet=3.0103;FS=3.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=1.15;SOR=0.275;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,24:37:99:750,0,346
chr2	182359613	rs165419	G	A	2901.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.27;SOR=3.726;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:802,66,0
chr2	182363613	rs1349196	T	A	1424.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.53;SOR=5.728;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:329,24,0
chr2	182374136	rs2198727	A	C	423.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.57;ReadPosRankSum=-3.190e-01;SOR=3.767;VQSLOD=18.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,3:4:2:106,2,0
chr2	182374179	rs2368211	T	C	1032.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.15;SOR=6.736;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:205,18,0
chr2	182374534	rs1143674	A	G	2747.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.395e+00;DB;DP=56;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=-7.540e-01;SOR=0.826;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1898,168,0
chr2	182376546	rs1466109	T	G	8781.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=0.955;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2380,224,0
chr2	182387133	rs7602504	A	G	1754.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.356e+00;DB;DP=39;ExcessHet=1.5490;FS=3.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=1.25;SOR=0.305;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1363,117,0
chr2	182394145	rs3770104	C	T	1914.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.81;DB;DP=20;ExcessHet=3.9794;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=0.708;SOR=2.621;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:842,60,0
chr2	182394567	rs921257	A	G	1019.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.160e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.67;ReadPosRankSum=0.164;SOR=1.414;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:415,33,0
chr2	182395345	rs1143676	G	A	6381.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;DB;DP=103;ExcessHet=3.9794;FS=0.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.964;SOR=0.737;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3169,309,0
chr2	182399097	rs7562325	T	C	2376.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.748e+00;DB;DP=50;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=1.03;SOR=0.668;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1483,149,0
chr2	182399497	rs11418738	A	ATT	3050.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.990e-01;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=-4.410e-01;SOR=0.668;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:46:99:1467,124,0
chr2	182399638	rs2124443	A	G	6558.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=1.429;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1885,191,0
chr2	182399986	rs4666787	A	G	328.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=0.00;SOR=3.442;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	182402790	rs6747500	G	A	2500.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.35;DB;DP=40;ExcessHet=3.9794;FS=0.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=0.565;SOR=0.554;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1288,120,0
chr2	182403222	rs138386485	TGCCTCTAGAACA	T	2891.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=48;ExcessHet=1.5490;FS=4.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.49;ReadPosRankSum=1.01;SOR=0.315;VQSLOD=6.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,48:48:99:2151,145,0
chr2	182403792	rs57234957	A	AT	16792.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=2.025;VQSLOD=5.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,132:132:99:5364,403,0
chr2	182403851	rs10180793	G	A	20409.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=0.866;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,214:214:99:6334,639,0
chr2	182404139	rs17226490	C	G	356.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=-5.450e-01;SOR=1.765;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:234,18,0
chr2	182412633	rs139036113	G	GACACACACACACAC	2017.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=17;ExcessHet=3.9794;FS=1.766;MQ=60.00;MQRankSum=0.00;QD=20.38;ReadPosRankSum=-1.224e+00;SOR=0.925;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:738,51,0
chr2	182412723	rs34890422	C	CGT	403.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=4;ExcessHet=3.9794;FS=5.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.145;SOR=2.194;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	182413259	rs12997453	A	G	2924.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.665;DB;DP=67;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-1.128e+00;SOR=0.694;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2192,201,0
chr2	182413602	rs13003064	A	T	2979.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.28;DB;DP=60;ExcessHet=1.5490;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=-9.920e-01;SOR=0.712;VQSLOD=6.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1889,179,0
chr2	182430120	rs7604902	C	A	2084.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=1.352;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2101,203,0
chr2	182438716	rs10427195	A	G	2078.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.482e+00;DB;DP=32;ExcessHet=1.5490;FS=1.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=0.840;SOR=1.418;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1188,96,0
chr2	182521578	rs1473295	G	A	11217.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=336;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.741;SOR=0.641;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:147,189:336:99:4372,0,3225
chr2	182543455	rs1801262	T	C	4459.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=88;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.670;SOR=0.711;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,38:88:99:1028,0,1377
chr2	182767178	rs34087767	C	G	477.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350e-01;DB;DP=43;ExcessHet=3.0103;FS=1.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=1.21;SOR=1.112;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:486,0,576
chr2	182794534	rs1051085	G	A	1919.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=4.935;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:702,54,0
chr2	182852282	rs1196291	T	C	66.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.46;SOR=2.303;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	182928555	rs1196161	G	C	14004.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.61;SOR=0.961;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4353,441,0
chr2	182981846	rs1882211	G	C	877.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.730e-01;DB;DP=7;ExcessHet=3.0103;FS=4.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.35;ReadPosRankSum=0.156;SOR=3.098;VQSLOD=18.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:256,21,0
chr2	182981968	rs1882212	A	G	2071.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.113e+00;DB;DP=39;ExcessHet=1.5490;FS=1.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=0.822;SOR=0.990;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1219,117,0
chr2	183033020	rs199755981	GA	G	920.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.890e-01;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=59.82;MQRankSum=0.00;QD=18.06;ReadPosRankSum=-1.794e+00;SOR=0.595;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:445,48,0
chr2	183050963	rs1368216	C	G	324.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=1.5490;FS=2.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.319;SOR=0.175;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:311,24,0
chr2	183051421	rs7597711	A	G	1084.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.00;ReadPosRankSum=1.25;SOR=1.402;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:467,36,0
chr2	183051449	rs10930991	T	C	299.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=4.174;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:314,21,0
chr2	183066377	rs111979949	C	CAA,CAAA	2395.27	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.052;DB;DP=30;ExcessHet=3.0103;FS=2.068;MQ=59.88;MQRankSum=-2.650e-01;QD=26.61;ReadPosRankSum=0.076;SOR=0.272;VQSLOD=0.039;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,21,5:30:34:877,117,34,528,0,485
chr2	183088584	rs3754929	G	A	5980.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.627e+00;DB;DP=93;ExcessHet=3.9794;FS=8.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=1.85;SOR=0.359;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2949,279,0
chr2	183094508	.	T	TTC	491.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.77;ReadPosRankSum=-7.120e-01;SOR=3.126;VQSLOD=4.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:22:318,22,0
chr2	183106427	rs2623435	C	G	897.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.935e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=1.08;SOR=1.730;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:408,33,0
chr2	183106758	rs2568667	T	G	4523.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.570;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=0.071;SOR=0.664;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2205,194,0
chr2	183129242	rs10930999	A	G	1139.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.50;ReadPosRankSum=0.445;SOR=1.426;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:799,66,0
chr2	183616592	rs3098359	C	T	10739.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.18;SOR=1.523;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3063,252,0
chr2	183640421	rs79447049	T	C	342.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=-2.310e-01;SOR=1.473;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:220,18,0
chr2	183723722	rs6433992	A	G	726.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.944e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=1.03;SOR=1.688;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:317,24,0
chr2	183793383	rs9333279	T	C	1271.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.895;DB;DP=27;ExcessHet=6.9897;FS=5.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=-3.110e-01;SOR=1.765;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,8:27:99:0|1:183793383_T_C:276,0,1213:183793383
chr2	183793398	rs9333280	A	G	1442.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=1.24;SOR=0.814;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,10:33:99:0|1:183793383_T_C:318,0,1301:183793383
chr2	183799558	rs9288088	G	C	1955.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013e+00;DB;DP=57;ExcessHet=6.9897;FS=1.195;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.072;SOR=0.814;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,24:57:99:565,0,795
chr2	183827018	rs2271671	G	A	2930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530e-01;DB;DP=81;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.314;SOR=0.680;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,32:81:99:718,0,1186
chr2	183832438	rs2368352	C	T	243.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=0.431;SOR=2.093;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:70,0,35
chr2	183841691	rs144939357	GA	G	200.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.78;ReadPosRankSum=0.879;SOR=0.399;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:209,0,137
chr2	183848114	rs1400130	T	C	1537.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473e+00;DB;DP=54;ExcessHet=6.9897;FS=1.277;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-6.520e-01;SOR=0.803;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,22:54:99:483,0,763
chr2	183851058	rs10185562	C	T	2031.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=6.556;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:558,42,0
chr2	183860298	rs10497617	G	A	507.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=1.59;SOR=0.693;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:145,0,182
chr2	183902651	rs2944358	G	A	1411.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003e+00;DB;DP=129;ExcessHet=3.0103;FS=1.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.149;SOR=0.542;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,61:129:99:1420,0,1675
chr2	183936915	rs2675117	A	G	4507.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.279;DB;DP=48;ExcessHet=3.0103;FS=0.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.53;ReadPosRankSum=2.32;SOR=0.595;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1671,144,0
chr2	183947962	rs11692613	T	C	218.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=1.28;SOR=1.402;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	183960477	rs35941903	C	T	565.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105e+00;DB;DP=18;ExcessHet=3.9794;FS=6.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.400;SOR=0.125;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:216,0,345
chr2	183960522	rs13399265	T	C	714.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=-4.900e-01;SOR=1.382;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:112,0,70
chr2	183988903	rs2705718	C	T	304.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.18;SOR=4.407;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	183988984	rs2705719	C	G	1475.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.60;POSITIVE_TRAIN_SITE;QD=26.71;SOR=4.351;VQSLOD=5.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:437,33,0
chr2	183989305	rs13035624	C	A	757.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.97;DB;DP=21;ExcessHet=3.9794;FS=2.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=2.47;SOR=1.329;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:454,0,223
chr2	183993327	rs34331888	TA	T	68.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.46;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:3:26,3,0
chr2	183995742	rs925803	A	C	1878.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=15;ExcessHet=3.0103;FS=6.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.439;SOR=0.369;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:419,45,0
chr2	184022015	rs3791249	G	C	1844.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636e+00;DB;DP=31;ExcessHet=1.5490;FS=3.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=0.437;SOR=0.242;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:523,0,476
chr2	184022445	rs7420841	T	G	714.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=5.892;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr2	184024190	rs3748884	A	G	1080.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.45;ReadPosRankSum=-1.691e+00;SOR=0.976;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:102,0,228
chr2	184024511	rs34967913	T	C	1131.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=19;ExcessHet=1.5490;FS=2.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.79;ReadPosRankSum=-2.412e+00;SOR=2.002;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:339,0,242
chr2	184024586	rs6434005	A	T	767.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.02;SOR=5.994;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr2	184025576	rs6714769	C	T	358.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=59.16;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.91;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=-5.470e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,97
chr2	185463815	rs147358574	C	CCT	6355.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=104;ExcessHet=1.5490;FS=1.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=-4.240e-01;SOR=0.588;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1446,0,1821
chr2	185798504	rs4667000	A	C	1360.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.221;SOR=0.620;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1090,96,0
chr2	185800905	rs12476147	A	T	2865.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.880e-01;DB;DP=73;ExcessHet=1.5490;FS=5.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=-4.810e-01;SOR=0.327;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2094,219,0
chr2	185801747	rs4667001	G	A	3368.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=59;ExcessHet=1.5490;FS=1.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.55;ReadPosRankSum=1.84;SOR=0.470;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:2,57:59:86:1|1:185801747_G_A:2381,86,0:185801747
chr2	185801755	rs4667002	A	G	5693.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.820e-01;DB;DP=49;ExcessHet=3.0103;FS=3.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.30;ReadPosRankSum=2.07;SOR=0.408;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,48:49:90:1|1:185801747_G_A:2197,90,0:185801747
chr2	185802211	rs3046266	C	CACA	2574.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.795;DB;DP=38;ExcessHet=1.5490;FS=6.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=0.691;SOR=0.235;VQSLOD=5.54;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1747,120,0
chr2	185802243	rs1366842	C	A	2646.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.936;DB;DP=57;ExcessHet=1.5490;FS=2.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=0.741;SOR=0.458;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2000,169,0
chr2	185802363	rs12477430	A	G	6413.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.053;DB;DP=105;ExcessHet=3.9794;FS=0.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=1.32;SOR=0.756;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3302,314,0
chr2	186610344	rs11884004	T	G	1386.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e-01;DB;DP=20;ExcessHet=1.5490;FS=6.195;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.17;ReadPosRankSum=-1.544e+00;SOR=0.150;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:313,0,232
chr2	186610388	rs17813736	G	A	896.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.93;ReadPosRankSum=0.125;SOR=1.542;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:258,0,164
chr2	186611566	rs6758484	C	A	3830.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.82;SOR=2.670;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1397,128,0
chr2	186611938	rs12618129	G	A	1395.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.930e-01;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=-2.700e-02;SOR=0.814;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:343,0,386
chr2	186625670	.	TA	T	1801.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DP=44;ExcessHet=1.5490;FS=0.990;MQ=60.00;MQRankSum=0.00;QD=18.96;ReadPosRankSum=0.012;SOR=0.880;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,21:44:99:418,0,464
chr2	186625770	rs7562137	A	G	3923.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320e+00;DB;DP=79;ExcessHet=1.5490;FS=1.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=-7.210e-01;SOR=0.870;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,41:79:99:939,0,952
chr2	186625880	rs10170781	C	G	413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.140e-01;DB;DP=24;ExcessHet=3.0103;FS=1.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=0.865;SOR=1.493;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:422,0,242
chr2	186627943	rs17228441	T	C	4567.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146e+00;DB;DP=105;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=-3.130e-01;SOR=0.722;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,62:105:99:1546,0,1067
chr2	186629349	rs1986166	G	A	694.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=9;ExcessHet=1.5490;FS=2.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=0.241;SOR=1.911;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:64:153,0,64
chr2	186653546	rs3752671	G	A	800.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DB;DP=66;ExcessHet=3.0103;FS=2.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.099e+00;SOR=0.771;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:809,0,947
chr2	186653908	.	C	G	1352.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DP=130;ExcessHet=3.0103;FS=5.483;MQ=60.00;MQRankSum=0.00;QD=10.40;ReadPosRankSum=-1.240e-01;SOR=0.803;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,52:130:99:1361,0,2105
chr2	186654592	rs992822	A	G	4213.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=71;ExcessHet=1.5490;FS=0.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=1.66;SOR=0.639;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,31:71:99:830,0,1063
chr2	186655726	rs10931199	G	A	8076.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=0.728;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2209,201,0
chr2	186656657	rs10173807	C	T	5009.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.62;SOR=1.119;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2266,198,0
chr2	186656956	rs17229201	T	C	4638.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.437e+00;DB;DP=90;ExcessHet=1.5490;FS=1.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=-1.437e+00;SOR=0.869;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1161,0,1152
chr2	186657089	rs17229222	C	A	3097.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=-3.120e-01;SOR=0.646;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,26:53:99:725,0,670
chr2	186658056	rs60029104	G	A	5185.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DB;DP=82;ExcessHet=1.5490;FS=6.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=-5.260e-01;SOR=0.484;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,38:82:99:948,0,1146
chr2	186658438	rs10490391	C	T	4746.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.910e-01;DB;DP=104;ExcessHet=1.5490;FS=1.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=-2.950e-01;SOR=0.865;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,58:104:99:1444,0,1238
chr2	186658565	rs10490392	G	T	3473.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513e+00;DB;DP=67;ExcessHet=1.5490;FS=2.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=0.623;SOR=0.590;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,25:67:99:657,0,1256
chr2	186659359	rs2161036	G	T	3998.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.613e+00;DB;DP=85;ExcessHet=1.5490;FS=0.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=-1.275e+00;SOR=0.761;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,41:85:99:1117,0,1324
chr2	186661673	rs55938253	A	G	3408.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=71;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.761;SOR=0.695;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,33:71:99:899,0,968
chr2	186664473	rs11686997	T	C	3110.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.504e+00;DB;DP=49;ExcessHet=1.5490;FS=1.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=-7.840e-01;SOR=0.511;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,29:49:99:748,0,519
chr2	186664963	rs10931200	C	A	3935.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DB;DP=62;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=0.064;SOR=0.720;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:1045,0,643
chr2	186665432	rs36004074	G	A	7704.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310e-01;DB;DP=154;ExcessHet=1.5490;FS=1.530;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.42;ReadPosRankSum=0.511;SOR=0.804;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,72:154:99:1901,0,2133
chr2	186665824	rs11695215	A	G	4125.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=83;ExcessHet=1.5490;FS=2.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=-2.110e+00;SOR=0.894;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:819,0,1372
chr2	186667121	rs7605884	T	C	4853.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=71;ExcessHet=1.5490;FS=4.523;MQ=59.95;MQRankSum=-9.860e-01;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=1.60;SOR=0.532;VQSLOD=2.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,35:71:99:921,0,1004
chr2	186667360	rs7565527	A	C	1349.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=104;ExcessHet=3.0103;FS=1.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=1.74;SOR=0.643;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1358,0,1261
chr2	186668714	rs17826419	A	T	3034.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.422e+00;DB;DP=107;ExcessHet=3.9794;FS=4.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.732;SOR=0.920;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,49:107:99:1250,0,1598
chr2	186670104	rs7576532	A	C	12656.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=0.812;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3868,360,0
chr2	186670780	rs16827154	T	A	3944.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=90;ExcessHet=1.5490;FS=7.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=-1.224e+00;SOR=1.091;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,36:90:99:873,0,1363
chr2	186670979	rs4666689	T	C	6533.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004e+00;DB;DP=60;ExcessHet=3.0103;FS=2.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-1.836e+00;SOR=0.943;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,27:60:99:635,0,928
chr2	186671357	rs17826534	G	A	3148.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=65;ExcessHet=1.5490;FS=0.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=0.821;SOR=0.744;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,34:65:99:946,0,800
chr2	186671912	rs1862066	G	A	3312.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=70;ExcessHet=1.5490;FS=4.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=0.623;SOR=0.878;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,35:70:99:922,0,890
chr2	186678241	rs34138386	A	AT	2684.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.950e-01;DB;DP=55;ExcessHet=1.5490;FS=0.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=0.713;SOR=0.563;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,24:55:99:616,0,847
chr2	186678877	rs17230036	A	G	515.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308e+00;DB;DP=39;ExcessHet=3.0103;FS=1.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=0.084;SOR=0.432;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,19:39:99:0|1:186678877_A_G:524,0,742:186678877
chr2	186678887	rs2161035	T	C	1835.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.388e+00;DB;DP=35;ExcessHet=1.5490;FS=1.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=1.09;SOR=1.179;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,16:35:99:1|0:186678877_A_G:440,0,748:186678877
chr2	186679942	rs2287607	C	G	60.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,125
chr2	186680041	rs2287606	G	T	1073.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=2.42;SOR=0.512;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:154,0,293
chr2	186696369	rs2302914	C	G	824.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.36;SOR=4.712;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr2	186696759	rs2302913	C	T	815.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=6.184;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr2	186696850	rs34091294	C	T	102.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:111,0,103
chr2	186697876	rs1468999	A	G	5419.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=1.166;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1775,177,0
chr2	186697986	.	C	A	30.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378e+00;DP=16;ExcessHet=3.0103;FS=4.559;MQ=60.00;MQRankSum=0.00;QD=1.89;ReadPosRankSum=-2.380e-01;SOR=0.052;VQSLOD=21.31;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:39:1|0:186697979_C_G:39,0,1046:186697979
chr2	186697988	.	T	A	33.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.578e+00;DP=16;ExcessHet=3.0103;FS=4.559;MQ=60.00;MQRankSum=0.00;QD=2.08;ReadPosRankSum=-2.380e-01;SOR=0.052;VQSLOD=21.32;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:42:1|0:186697979_C_G:42,0,1025:186697979
chr2	186697990	.	T	C	33.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536e+00;DP=15;ExcessHet=3.0103;FS=4.301;MQ=60.00;MQRankSum=0.00;QD=2.22;ReadPosRankSum=-4.250e-01;SOR=0.061;VQSLOD=21.31;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,2:15:42:1|0:186697979_C_G:42,0,1025:186697979
chr2	187351344	rs3214710	C	CTG	930.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=9;ExcessHet=3.0103;FS=3.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.10;ReadPosRankSum=0.431;SOR=2.387;VQSLOD=6.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,299
chr2	187364811	rs4144786	G	A	908.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.34;ReadPosRankSum=-9.920e-01;SOR=1.675;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:111,0,110
chr2	187365374	rs62200583	A	G	449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271e+00;DB;DP=29;ExcessHet=3.0103;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-3.238e+00;SOR=0.385;VQSLOD=21.61;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,17:29:99:458,0,307
chr2	187367534	rs3768776	T	C	577.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=6.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.25;ReadPosRankSum=0.272;SOR=3.967;VQSLOD=13.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:89:89,0,179
chr2	187368733	rs10164423	G	A	736.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DB;DP=79;ExcessHet=3.0103;FS=0.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.32;ReadPosRankSum=0.282;SOR=0.522;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,34:79:99:745,0,1058
chr2	187369013	rs11402438	T	TG	699.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=6.273;VQSLOD=6.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr2	187373146	rs7558856	G	A	585.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=26.19;SOR=5.549;VQSLOD=6.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr2	187455278	rs9333287	C	T	3546.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.000e-01;DB;DP=44;ExcessHet=3.0103;FS=3.660;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=0.131;SOR=0.339;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1455,132,0
chr2	187466921	rs200501166	A	AT	300.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.750e-01;DB;DP=19;ExcessHet=3.0103;FS=2.865;MQ=60.00;MQRankSum=0.00;QD=15.80;ReadPosRankSum=-1.010e+00;SOR=0.144;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,13:19:94:309,0,94
chr2	187487160	rs9333288	G	A	5909.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.696e+00;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=-1.965e+00;SOR=0.673;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2157,219,0
chr2	187490371	rs2197787	T	G	1184.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=9;ExcessHet=3.0103;FS=4.388;MQ=59.29;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=-1.580e-01;SOR=1.863;VQSLOD=0.570;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:350,27,0
chr2	187490389	rs28633327	G	T	1001.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.040e-01;DB;DP=3;ExcessHet=3.0103;FS=3.245;MQ=59.48;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=37.61;ReadPosRankSum=-6.320e-01;SOR=2.494;VQSLOD=-1.264e+00;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:15:222,15,0
chr2	187490405	rs199552451	T	TGTGTGTGA	702.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.30;POSITIVE_TRAIN_SITE;QD=30.40;SOR=3.611;VQSLOD=6.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr2	187497988	rs56088351	A	G	1994.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;DB;DP=77;ExcessHet=3.9794;FS=5.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=1.08;SOR=1.213;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,34:77:99:810,0,1063
chr2	187500682	rs3795865	A	G	152.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=-8.420e-01;SOR=1.329;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:161,0,61
chr2	187501648	rs13430921	A	G	1356.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.27;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=0.250;SOR=0.593;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:534,0,302
chr2	187501682	rs56136540	G	A	2443.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757e+00;DB;DP=45;ExcessHet=6.9897;FS=2.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=1.21;SOR=0.959;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,20:45:99:562,0,795
chr2	187502846	rs13422838	T	C	418.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720e-01;DB;DP=17;ExcessHet=3.9794;FS=3.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.772;SOR=1.609;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:83:83,0,354
chr2	187503226	rs4667108	T	C	3227.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=99;ExcessHet=6.9897;FS=2.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.075;SOR=0.853;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,34:99:99:769,0,1615
chr2	187503358	rs34535817	C	CGTGTGT	640.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.01;ReadPosRankSum=1.83;SOR=2.303;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:14:1|1:187503358_C_CGTGTGT:224,14,0:187503358
chr2	187503399	rs41270221	A	G	354.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.32;ReadPosRankSum=0.876;SOR=1.329;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:63:0|1:187503358_C_CGTGTGT:204,0,63:187503358
chr2	187505486	rs3816375	A	G	280.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.374;SOR=0.793;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:102,0,27
chr2	187528695	rs55767908	A	G	234.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DB;DP=14;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=-3.750e-01;SOR=2.303;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:243,0,171
chr2	187529652	rs2595393	T	A	738.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.56;SOR=2.948;VQSLOD=18.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:272,21,0
chr2	187529823	rs201401004	ATT	A,AT	2531.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.417e+00;DB;DP=80;ExcessHet=3.0103;FS=0.650;MQ=59.73;MQRankSum=-3.400e-01;QD=11.20;ReadPosRankSum=-1.810e-01;SOR=0.824;VQSLOD=0.676;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:10,22,42:80:99:1456,699,902,390,0,367
chr2	187530116	rs2595392	C	G	848.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=0.440;SOR=0.257;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:383,0,354
chr2	187532010	rs41265951	G	T	3286.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DB;DP=63;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-1.590e-01;SOR=0.669;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,34:63:99:890,0,825
chr2	187532373	rs2595391	T	G	1620.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=44;ExcessHet=3.9794;FS=3.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=1.76;SOR=1.061;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:708,0,436
chr2	187532417	rs2230616	G	A	7343.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=1.091;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2060,210,0
chr2	187533741	rs2290083	T	C	459.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=0.984;SOR=0.518;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:61:61,0,272
chr2	187559047	rs144403657	G	GCAA	17102.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.903;DB;DP=192;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=2.22;SOR=0.715;VQSLOD=6.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,190:192:99:8099,550,0
chr2	187608102	rs200281950	T	TC	1698.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350e-01;DB;DP=83;ExcessHet=3.9794;FS=0.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=1.52;SOR=0.614;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,37:83:99:877,0,1161
chr2	187611748	rs2247924	G	A	9042.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.76;SOR=1.934;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2736,272,0
chr2	187627567	rs2595381	G	A	1219.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=44;ExcessHet=3.9794;FS=2.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=1.70;SOR=0.936;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,17:44:99:402,0,678
chr2	187692908	rs17852916	T	G	2710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.650e-01;DB;DP=108;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=1.52;SOR=0.670;VQSLOD=6.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,53:108:99:1164,0,1461
chr2	187692983	rs17856918	T	C	2488.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=92;ExcessHet=3.9794;FS=2.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-9.360e-01;SOR=0.911;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,50:92:99:1333,0,1092
chr2	187693003	rs10195632	A	T	2204.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e-01;DB;DP=81;ExcessHet=3.9794;FS=3.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-6.770e-01;SOR=0.936;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1107,0,1003
chr2	187693044	rs17852915	C	T	1851.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DB;DP=69;ExcessHet=3.9794;FS=0.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=2.40;SOR=0.785;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,37:69:99:933,0,922
chr2	187693104	rs10172225	C	T	1784.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DB;DP=61;ExcessHet=3.9794;FS=0.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.336;SOR=0.614;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,39:61:99:1063,0,606
chr2	187693155	rs10195758	A	T	1678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=58;ExcessHet=3.9794;FS=8.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-2.380e-01;SOR=1.178;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,31:58:99:1017,0,743
chr2	187693521	rs59504667	TA	T	1518.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=42;ExcessHet=3.9794;FS=3.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.253;SOR=0.383;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,27:42:99:699,0,327
chr2	187694297	rs6745642	G	A	101.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:60:109,0,60
chr2	187694410	rs6745572	C	T	437.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=12;ExcessHet=3.9794;FS=2.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=2.51;SOR=1.230;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:94:94,0,267
chr2	187694833	rs10191094	T	C	54.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:63,0,33
chr2	187697883	rs10164815	A	G	1063.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=0.776;SOR=0.635;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:422,0,554
chr2	187697996	rs10188850	C	T	968.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=35;ExcessHet=3.9794;FS=0.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=0.845;SOR=0.867;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:343,0,526
chr2	187698019	rs10189037	G	T	786.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DB;DP=31;ExcessHet=3.9794;FS=2.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.381;SOR=1.002;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:306,0,493
chr2	187698037	rs7609183	G	A	3883.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=2.115;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:857,81,0
chr2	187698053	rs10188869	C	T	514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=23;ExcessHet=3.9794;FS=7.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-1.199e+00;SOR=2.047;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:215,0,389
chr2	187698707	rs6434197	C	T	1358.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.160e-01;DB;DP=75;ExcessHet=3.9794;FS=0.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=1.22;SOR=0.593;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,30:75:99:663,0,1127
chr2	187702339	.	G	GTATA	155.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.08;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:187702339_G_GTATA:89,6,0:187702339
chr2	187702364	rs11903271	A	G	164.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.48;SOR=3.258;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:187702339_G_GTATA:90,6,0:187702339
chr2	187704036	rs72895306	C	T	395.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=0.826;SOR=1.022;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:404,0,285
chr2	187709415	rs72096458	AC	A	413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=35;ExcessHet=3.0103;FS=1.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-1.819e+00;SOR=0.972;VQSLOD=6.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,14:35:99:422,0,680
chr2	187709553	rs11892669	A	G	299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.210e-01;DB;DP=17;ExcessHet=3.0103;FS=5.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=1.46;SOR=0.387;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:308,0,162
chr2	187712648	rs11885224	T	G	217.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=0.241;SOR=1.402;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:91:226,0,91
chr2	187712685	rs140128829	C	CTGATTTTTCAT	99.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.189;SOR=0.693;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:108,0,168
chr2	187713396	rs3100021	C	A	627.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.241e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.84;ReadPosRankSum=-3.190e-01;SOR=2.833;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:187713396_C_A:180,12,0:187713396
chr2	187713412	rs3114951	C	T	902.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.72;ReadPosRankSum=-2.830e-01;SOR=3.098;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:187713396_C_A:261,18,0:187713396
chr2	187713866	rs6725956	C	G	437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-1.610e-01;SOR=0.507;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:446,0,210
chr2	187713922	rs6726153	G	A	131.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=-1.718e+00;SOR=0.941;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:140,0,105
chr2	188216783	rs858744	C	T	2152.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.720e-01;DB;DP=74;ExcessHet=3.9794;FS=1.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.017;SOR=0.790;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,30:74:99:868,0,1337
chr2	188216807	rs858745	T	C	5050.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.813;DB;DP=80;ExcessHet=3.9794;FS=0.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=0.428;SOR=0.636;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2812,240,0
chr2	188224057	rs1706287	A	G	344.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-6.740e-01;SOR=0.741;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:137,15,0
chr2	188227921	rs698582	A	G	343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.967;SOR=0.242;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:58:58,0,276
chr2	188243633	rs3771084	A	G	2086.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=0.139;SOR=0.664;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:562,0,429
chr2	188245640	rs1511877	G	A	1160.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=4.548;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr2	188250301	rs698577	T	A	5127.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.47;SOR=1.005;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1370,132,0
chr2	188332692	rs8176592	A	G	1352.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=44;ExcessHet=3.9794;FS=8.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=1.33;SOR=1.569;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,17:44:99:461,0,696
chr2	188343497	rs7586970	T	C	856.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=1.93;SOR=0.752;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:459,0,541
chr2	188348670	rs3213739	T	G	222.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:78,0,65
chr2	188348696	rs144825443	TAAAC	T	108.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.04;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,158
chr2	188368189	rs138349562	T	TAC	144.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.03;SOR=3.912;VQSLOD=4.77;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:103,12,0
chr2	189434884	rs200711089	T	C	361.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=58;ExcessHet=3.0103;FS=7.580;MQ=60.00;MQRankSum=0.00;QD=6.23;ReadPosRankSum=-1.660e-01;SOR=1.591;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,19:58:99:370,0,856
chr2	189448896	rs2048138	A	T	5048.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=3.321;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1092,103,0
chr2	189849773	rs3106796	A	G	927.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=24;ExcessHet=3.9794;FS=1.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=-4.640e-01;SOR=0.874;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:351,0,403
chr2	189855674	rs2203601	T	A	116.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=18;ExcessHet=3.9794;FS=1.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.23;ReadPosRankSum=1.04;SOR=1.230;VQSLOD=22.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,3:18:38:38,0,394
chr2	189856671	rs3134656	C	T	297.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-2.720e-01;SOR=1.085;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:133,0,149
chr2	189861031	rs141685938	T	TAC	808.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=14;ExcessHet=3.9794;FS=3.330;MQ=60.00;MQRankSum=0.00;QD=21.85;ReadPosRankSum=1.74;SOR=1.453;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,13:14:8:380,8,0
chr2	189862048	rs7579815	G	C	350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.455;SOR=0.846;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:359,0,474
chr2	189862097	rs7579903	G	A	297.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-3.330e-01;SOR=0.527;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:306,0,478
chr2	189862203	rs3134654	C	T	1624.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=1.312;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:477,39,0
chr2	189864582	rs1801184	T	C	3876.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=72;ExcessHet=6.9897;FS=3.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.750;SOR=0.504;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,35:72:99:994,0,930
chr2	189864840	rs3134653	C	T	478.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=5.283;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:279,21,0
chr2	189866199	rs2271682	T	A	1703.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DB;DP=52;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=-3.120e-01;SOR=0.723;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,17:52:99:345,0,859
chr2	189867205	rs3106801	G	A	274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=1.88;SOR=0.571;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:130,0,253
chr2	189874873	rs10204508	C	A	1793.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=44;ExcessHet=6.9897;FS=1.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.695;SOR=0.951;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:495,0,614
chr2	189875421	rs1516446	T	G	8599.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=0.956;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2754,257,0
chr2	189899541	rs4666770	T	C	1570.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.49;SOR=4.174;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:457,42,0
chr2	189899572	rs7420715	T	C	2283.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=4.209;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:750,66,0
chr2	189900093	rs4667259	C	T	522.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.58;SOR=5.283;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr2	189901295	rs12693526	G	A	4439.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.600e-02;DB;DP=39;ExcessHet=3.0103;FS=1.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.40;ReadPosRankSum=-2.004e+00;SOR=0.916;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1320,116,0
chr2	189907937	rs6434312	A	G	6377.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=0.721;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2216,230,0
chr2	189910066	rs111268949	ATG	A	221.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=14;ExcessHet=3.9794;FS=6.689;MQ=60.00;MQRankSum=0.00;QD=7.90;ReadPosRankSum=0.389;SOR=2.160;VQSLOD=3.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,3:14:64:64,0,326
chr2	189915006	rs11277110	CTCCGGGA	C	201.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.64;ReadPosRankSum=1.15;SOR=2.303;VQSLOD=6.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	189918337	rs6750027	T	C	742.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.41;SOR=3.500;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	189918787	rs6738371	C	T	3412.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.248e+00;DB;DP=41;ExcessHet=3.0103;FS=1.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=-7.490e-01;SOR=0.758;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1312,123,0
chr2	189923104	rs7556733	A	G	9390.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.65;SOR=1.860;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2297,213,0
chr2	189923401	rs10178611	T	C	2219.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=9;ExcessHet=3.0103;FS=4.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=0.840;SOR=1.256;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:383,27,0
chr2	189923434	rs12989558	A	C	2317.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=11;ExcessHet=3.0103;FS=2.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.11;ReadPosRankSum=0.167;SOR=0.306;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,10:11:23:390,23,0
chr2	189923630	rs5837121	AT	A	5954.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.57;SOR=0.877;VQSLOD=5.54;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1606,176,0
chr2	189925313	rs6414121	G	C	383.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.48;ReadPosRankSum=1.28;SOR=1.473;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr2	189925548	rs6414122	T	A	3482.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=0.874;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1326,135,0
chr2	189927506	rs7424947	C	G	1611.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=3.657;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:452,42,0
chr2	189932764	rs35830636	G	A	2668.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023e+00;DB;DP=192;ExcessHet=3.0103;FS=0.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.49;SOR=0.758;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,100:192:99:2677,0,2518
chr2	189932831	rs2229495	T	C	14985.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=1.148;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4783,439,0
chr2	189936687	rs6434317	T	G	2688.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.160e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=1.72;SOR=0.592;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1053,96,0
chr2	189940142	rs76148000	T	G	868.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DB;DP=60;ExcessHet=3.0103;FS=0.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-2.610e-01;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,34:60:99:877,0,604
chr2	189943121	rs5837122	GA	G	1030.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.190e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=-5.790e-01;SOR=2.687;VQSLOD=6.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:139,15,0
chr2	189953285	rs5837124	A	AAATG	652.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.11;SOR=3.767;VQSLOD=5.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	189974958	rs4128539	G	T	5837.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=34.17;SOR=3.202;VQSLOD=4.27;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1842,158,0
chr2	189997475	rs62182416	C	T	326.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.46;SOR=4.407;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr2	189997838	rs62182417	G	A	3288.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=22;ExcessHet=3.0103;FS=5.083;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.37;ReadPosRankSum=1.90;SOR=1.721;VQSLOD=4.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:772,66,0
chr2	189997840	.	CTTT	C	521.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.72;MQRankSum=0.00;QD=27.44;ReadPosRankSum=1.30;SOR=4.112;VQSLOD=2.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:3:9:90,9,0
chr2	190313396	rs6738193	A	G	3429.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.255e+00;DB;DP=38;ExcessHet=3.0103;FS=2.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=-5.400e-01;SOR=1.031;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1179,113,0
chr2	190313841	rs1992295	T	C	1346.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.54;ReadPosRankSum=0.200;SOR=0.527;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:454,33,0
chr2	190319966	rs5837143	C	CA	934.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=11;ExcessHet=1.5490;FS=6.039;MQ=59.62;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=0.473;SOR=3.797;VQSLOD=4.54;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,9:11:20:245,0,20
chr2	190319990	rs1224958	A	G	4811.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.82;POSITIVE_TRAIN_SITE;QD=30.58;SOR=3.221;VQSLOD=5.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:965,69,0
chr2	190322196	rs10497700	T	C	1764.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.82;ReadPosRankSum=-1.009e+00;SOR=2.925;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,18:19:14:670,14,0
chr2	190323530	rs1157910	A	G	8803.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=1.113;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3471,349,0
chr2	190327076	rs2304703	C	T	1010.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=5.136;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:448,33,0
chr2	190327126	rs2304702	C	G	2670.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=1.50;SOR=0.680;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1124,96,0
chr2	190328853	rs963738	T	C	163.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.72;SOR=1.981;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	190332997	rs6434343	T	A	577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.11;ReadPosRankSum=0.431;SOR=2.833;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:150,0,25
chr2	190339632	rs72916214	T	C	292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.418;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=-6.720e-01;SOR=0.976;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:301,0,244
chr2	190430177	rs2304704	A	G	3985.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=88;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=1.40;SOR=0.645;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2619,263,0
chr2	190443304	rs1439815	C	T	1244.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.850e-01;DB;DP=27;ExcessHet=1.5490;FS=1.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=0.568;SOR=1.279;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:985,81,0
chr2	190444630	rs1439816	C	G	6601.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.250e-01;DB;DP=89;ExcessHet=3.0103;FS=2.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=1.66;SOR=0.957;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2844,267,0
chr2	190444885	rs5837154	GGTTT	G	78.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=2.303;VQSLOD=5.85;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	190445076	rs4287798	T	G	1291.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=25;ExcessHet=1.5490;FS=1.541;MQ=59.67;MQRankSum=-6.470e-01;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=0.189;SOR=0.422;VQSLOD=0.773;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:74:762,74,0
chr2	190445495	rs3833570	T	TCCG	313.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=-7.920e-01;SOR=0.368;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:18:264,18,0
chr2	190448047	rs987028	T	C	4785.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.70;SOR=1.819;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1105,101,0
chr2	190448548	rs368151678	CAT	C	1394.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DB;DP=26;ExcessHet=6.9897;FS=12.508;MQ=59.76;MQRankSum=0.00;QD=17.65;ReadPosRankSum=0.205;SOR=2.147;VQSLOD=1.20;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,20:26:12:900,0,12
chr2	190448550	rs11887968	T	*,C	1011.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.76;NEGATIVE_TRAIN_SITE;QD=12.33;SOR=2.303;VQSLOD=-1.555e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,24,2:26:11:1406,105,11,1022,0,993
chr2	190448552	rs11887969	T	*,C	2236.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.76;QD=26.32;SOR=2.168;VQSLOD=2.83;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,4,26:30:3:1395,745,653,103,0,3
chr2	190531426	rs1437880	G	A	9865.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=0.736;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3100,276,0
chr2	190535538	rs893782	C	T	259.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=4.174;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr2	190541842	.	ATT	A,AT	1272.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.230e-01;DP=26;ExcessHet=3.0103;FS=2.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-1.817e+00;SOR=0.339;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,7,12:26:76:369,135,273,76,0,112
chr2	190554462	rs17271239	A	G	1623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DB;DP=113;ExcessHet=3.0103;FS=3.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.541;SOR=0.452;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,63:113:99:1632,0,1241
chr2	190570001	rs11319823	TA	T	1800.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.58;SOR=3.223;VQSLOD=6.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:317,33,0
chr2	190593311	rs1225087	C	G	5389.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=1.810;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1808,153,0
chr2	190595258	rs1225090	G	T	6430.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=1.135;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2069,210,0
chr2	190602513	rs1225099	T	C	9606.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.74;SOR=0.933;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2903,296,0
chr2	190603201	rs56352098	T	TA	2934.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=36;ExcessHet=3.0103;FS=1.141;MQ=60.00;MQRankSum=0.00;QD=21.42;ReadPosRankSum=1.37;SOR=1.068;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1024,111,0
chr2	190609716	.	T	TCTACTACTACTA	88.61	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DP=1;ExcessHet=0.7918;FS=0.000;MQ=59.06;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=-6.740e-01;SOR=1.609;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:2:43,2,0
chr2	190610890	rs2254146	G	A	71.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.44;SOR=2.303;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	190611084	rs13002216	T	C	3376.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.979e+00;DB;DP=40;ExcessHet=3.0103;FS=6.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-5.180e-01;SOR=0.241;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1221,120,0
chr2	190611414	rs2254166	T	C	3064.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.35;SOR=2.670;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:632,51,0
chr2	190611459	rs2254167	A	G	1192.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=3.981;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
chr2	190617643	rs2243876	A	G	7811.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=1.534;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2323,216,0
chr2	190636411	rs6942	C	G	1205.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.36;DB;DP=10;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=1.33;SOR=1.276;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:400,30,0
chr2	190640475	rs3816196	A	G	3574.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.090e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=-1.106e+00;SOR=0.712;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1343,123,0
chr2	190643257	rs7591929	G	A	5579.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.197e+00;DB;DP=88;ExcessHet=3.0103;FS=7.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=-6.900e-02;SOR=0.319;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2494,262,0
chr2	190647108	rs10168387	T	C	2661.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.74;SOR=3.167;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:603,51,0
chr2	190788844	rs35940796	T	TC	3632.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=55.81;QD=25.99;SOR=0.782;VQSLOD=3.73;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1024,81,0
chr2	191064753	rs6753459	C	T	2005.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DB;DP=63;ExcessHet=3.9794;FS=0.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=1.67;SOR=0.638;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,27:63:99:668,0,969
chr2	191073924	rs7562807	C	G	340.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,108
chr2	191109448	rs7582209	G	A	508.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415e+00;DB;DP=23;ExcessHet=3.9794;FS=5.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-1.553e+00;SOR=0.167;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:273,0,423
chr2	191109533	rs11883568	C	T	1115.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854e+00;DB;DP=45;ExcessHet=3.9794;FS=0.797;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=1.93;SOR=0.811;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:539,0,688
chr2	191109870	rs2303827	C	A	342.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=1.06;SOR=1.112;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr2	191110715	.	CA	C	380.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.690e-01;DP=14;ExcessHet=6.9897;FS=0.000;MQ=59.71;MQRankSum=0.00;QD=9.06;ReadPosRankSum=0.623;SOR=0.693;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:110,0,105
chr2	191114229	rs2244076	T	C	634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.050e-01;DB;DP=12;ExcessHet=3.9794;FS=2.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=1.68;SOR=0.288;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:191114229_T_C:234,0,365:191114229
chr2	191114235	rs2244075	G	A	667.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=12;ExcessHet=3.9794;FS=2.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=1.68;SOR=0.327;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:191114229_T_C:234,0,365:191114229
chr2	191116355	rs3791792	A	G	681.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850e-01;DB;DP=21;ExcessHet=3.9794;FS=5.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-7.000e-02;SOR=1.911;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:300,0,279
chr2	191116401	.	G	GT	51.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.920e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.41;ReadPosRankSum=1.15;SOR=1.270;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:60:60,0,116
chr2	191116438	rs3838547	C	CAT	290.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=0.484;SOR=0.593;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,118
chr2	191159232	rs188339	A	G	2658.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.713;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=-3.760e-01;SOR=0.676;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:582,0,676
chr2	191161622	rs1058180	T	C	5383.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=90;ExcessHet=3.9794;FS=0.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.666;SOR=0.728;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1141,0,967
chr2	191161845	rs2582743	C	T	290.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=-5.240e-01;SOR=2.303;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:105,0,61
chr2	191175639	rs36074132	GT	G	6361.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.66;ReadPosRankSum=0.697;SOR=0.743;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,34:63:99:962,0,777
chr2	191184524	rs3749022	C	T	8250.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=173;ExcessHet=3.9794;FS=0.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=0.269;SOR=0.646;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,82:173:99:2001,0,2270
chr2	191208795	rs760307	C	T	9319.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=195;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=0.410;SOR=0.777;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,104:195:99:2547,0,2367
chr2	191224752	rs2067402	T	G	333.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.86;ReadPosRankSum=0.00;SOR=3.056;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:80,0,31
chr2	191224981	rs4656	G	T	4167.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DB;DP=71;ExcessHet=1.5490;FS=3.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=-5.660e-01;SOR=1.113;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,39:71:99:1013,0,727
chr2	191225197	rs2067405	A	G	1252.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=0.726;SOR=1.287;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:250,0,198
chr2	191225238	rs2067406	G	C	488.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=0.816;SOR=2.049;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:238,0,125
chr2	191225277	rs2067407	A	G	193.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=1.15;SOR=2.584;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:114,0,28
chr2	191225306	rs2067408	C	T	141.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.74;SOR=3.258;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	191227197	rs2067420	G	A	1548.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=24;ExcessHet=1.5490;FS=2.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=-2.050e-01;SOR=0.313;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:433,0,301
chr2	191227235	rs2067421	T	G	2593.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=41;ExcessHet=1.5490;FS=7.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.50;ReadPosRankSum=-1.416e+00;SOR=0.128;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,27:41:99:868,0,384
chr2	191227492	rs972689	A	G	1220.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.89;ReadPosRankSum=-2.225e+00;SOR=1.179;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,13:16:75:459,0,75
chr2	191231207	rs1530226	T	C	378.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=4.804;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:188,15,0
chr2	191231273	rs9784054	C	A	800.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.82;SOR=3.352;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:362,30,0
chr2	191231458	rs11544940	G	A	4929.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=1.486;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2326,214,0
chr2	191231503	rs10931450	G	A	4480.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205e+00;DB;DP=90;ExcessHet=1.5490;FS=0.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=-8.100e-02;SOR=0.608;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1050,0,1193
chr2	191235901	rs1882891	A	C	11713.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.963e+00;DB;DP=142;ExcessHet=3.0103;FS=1.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.58;ReadPosRankSum=0.320;SOR=0.916;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4279,423,0
chr2	191301368	rs9646748	A	G	4979.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.23;DB;DP=91;ExcessHet=1.5490;FS=5.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=0.757;SOR=0.480;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3136,273,0
chr2	191334459	rs145257711	A	ATTTTTAT	890.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=35.47;SOR=4.294;VQSLOD=5.73;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	191354491	rs3811609	T	C	1252.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=1.18;SOR=0.770;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,52:98:99:1261,0,1039
chr2	191354658	rs59123011	C	CCT	9884.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=1.329;VQSLOD=5.75;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,73:73:99:3200,219,0
chr2	191364309	rs7594994	C	T	597.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.510e-01;DB;DP=14;ExcessHet=3.9794;FS=2.741;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=1.31;SOR=0.260;VQSLOD=5.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:210,0,194
chr2	191373775	rs6707244	C	T	12612.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.51;SOR=1.555;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3386,335,0
chr2	191374043	rs13429315	C	T	876.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.618e+00;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.241;SOR=0.725;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:343,0,558
chr2	191375375	rs6712426	G	A	2589.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=6.059;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1271,90,0
chr2	191375478	rs6727669	T	G	445.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=4.977;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr2	191379268	rs4586658	G	A	2149.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=1.32;SOR=0.679;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,43:71:99:1099,0,634
chr2	191379592	rs114034295	C	T	111.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=2.833;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	191383924	rs13395233	C	G	1187.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900e-02;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=1.22;SOR=0.794;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:674,0,378
chr2	191383951	rs144954119	CTCT	C	301.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=26;ExcessHet=3.0103;FS=2.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-1.080e-01;SOR=2.093;VQSLOD=6.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,9:26:99:310,0,671
chr2	191389853	rs74975456	T	C	1385.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=3.33;SOR=0.733;VQSLOD=5.03;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,22:40:99:664,0,469
chr2	191390126	rs10931458	G	A	2677.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=2.133;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:962,84,0
chr2	191399201	rs12619125	G	A	139.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.652;SOR=0.941;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:148,0,111
chr2	191399258	.	G	GCGC	374.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.410e-01;DP=19;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;QD=19.70;ReadPosRankSum=0.776;SOR=0.243;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:383,0,358
chr2	191399378	rs13412879	C	G	1513.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.320e-01;DB;DP=77;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.30;ReadPosRankSum=1.10;SOR=0.678;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,42:77:99:881,0,839
chr2	191399433	rs12693579	T	C	3625.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.906;DB;DP=77;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.55;ReadPosRankSum=-1.073e+00;SOR=0.709;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,75:77:99:2148,181,0
chr2	191523743	rs11684257	T	C	183.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=0.439;SOR=1.402;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:192,0,400
chr2	191535311	rs2109957	T	C	1339.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=1.44;SOR=0.855;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:537,0,486
chr2	191537793	rs5837195	GT	G	1358.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DB;DP=66;ExcessHet=3.9794;FS=1.433;MQ=59.78;MQRankSum=0.378;QD=11.22;ReadPosRankSum=2.42;SOR=0.551;VQSLOD=-1.257e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,33:66:99:629,0,537
chr2	191545821	rs12618075	A	G	1528.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020e+00;DB;DP=46;ExcessHet=3.9794;FS=14.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.596;SOR=0.152;VQSLOD=14.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:620,0,538
chr2	191552121	.	CAAAA	CAAA,C	1186.19	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.501;DP=26;ExcessHet=3.0103;FS=1.437;MQ=59.94;MQRankSum=0.00;QD=15.21;ReadPosRankSum=0.974;SOR=0.412;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,4,9:26:3:326,237,271,3,0,414
chr2	191552148	rs6716415	C	T	278.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582e+00;DB;DP=31;ExcessHet=3.0103;FS=4.561;MQ=60.00;MQRankSum=0.00;QD=8.98;ReadPosRankSum=-1.035e+00;SOR=0.160;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:287,0,639
chr2	191765206	rs3771313	T	C	783.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e-01;DB;DP=15;ExcessHet=1.5490;FS=3.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=0.963;SOR=2.147;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:200,0,242
chr2	191777768	rs11363248	AT	A	889.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.000e-02;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=1.88;SOR=2.891;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:282,30,0
chr2	191818065	rs6434430	T	C	1726.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.86;ReadPosRankSum=0.578;SOR=3.215;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:582,42,0
chr2	191839976	rs1914408	C	T	1326.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DB;DP=40;ExcessHet=3.9794;FS=0.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=1.77;SOR=0.584;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:549,0,518
chr2	191841759	rs2066804	G	A	3214.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=109;ExcessHet=3.9794;FS=1.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.243;SOR=0.830;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,60:109:99:1632,0,1202
chr2	191841879	rs7597768	A	G	722.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=-9.810e-01;SOR=1.352;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:384,0,120
chr2	191843830	rs2280235	A	G	2488.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=70;ExcessHet=3.9794;FS=5.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=0.521;SOR=1.509;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,39:70:99:1307,0,884
chr2	191848312	rs12477076	T	C	4425.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.56;SOR=2.722;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1655,141,0
chr2	191850099	rs2280234	A	G	240.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=-6.740e-01;SOR=2.584;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:38:0|1:191850099_A_G:38,0,77:191850099
chr2	191850111	rs182559363	C	T	68.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:31:0|1:191850099_A_G:77,0,31:191850099
chr2	191898886	rs2459609	T	C	920.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.06;SOR=3.611;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:502,42,0
chr2	191898949	rs3024891	C	T	239.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.24;SOR=2.584;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:255,21,0
chr2	191922841	rs3024866	G	A	3414.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.824;DB;DP=33;ExcessHet=3.0103;FS=0.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=1.40;SOR=0.877;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,31:33:16:828,16,0
chr2	191923026	rs1818625	T	C	720.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.48;SOR=5.892;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr2	191923064	rs1850442	T	C	290.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.29;SOR=1.863;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr2	191931464	rs1517352	A	C	152.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.92;SOR=3.258;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr2	192141343	rs12989203	G	A	143.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=1.609;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr2	192161058	rs11397643	G	GT	3980.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=36;ExcessHet=3.0103;FS=2.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=2.09;SOR=1.670;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1024,108,0
chr2	192214833	rs67146186	A	T	2441.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=40;ExcessHet=6.9897;FS=0.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-4.000e-03;SOR=0.763;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:638,0,450
chr2	192214966	rs59642822	T	C	1968.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=42;ExcessHet=6.9897;FS=5.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.180;SOR=1.230;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:539,0,625
chr2	192225294	rs2138913	A	G	2764.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.18;DB;DP=43;ExcessHet=3.9794;FS=3.412;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=1.27;SOR=0.425;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1422,129,0
chr2	192225477	rs10692524	G	GTGTTGT,GTGGTGTTGT	1393.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.123;DB;DP=26;ExcessHet=3.9794;FS=1.269;MQ=60.00;MQRankSum=0.00;QD=24.02;ReadPosRankSum=-3.270e-01;SOR=1.047;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,11,15:26:99:931,470,439,450,0,593
chr2	192226908	rs2271769	G	C	1656.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.45;DB;DP=18;ExcessHet=3.9794;FS=5.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=-8.370e-01;SOR=0.101;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:701,54,0
chr2	192227230	rs12988758	T	C	1001.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=48;ExcessHet=3.0103;FS=13.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=0.823;SOR=0.032;VQSLOD=14.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,33:48:99:1010,0,449
chr2	192245855	rs4853589	A	T	812.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.38;SOR=6.184;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:317,24,0
chr2	192247808	rs34460997	A	G	3097.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=7.223;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1110,78,0
chr2	192247836	rs4641883	C	T	4010.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.98;SOR=3.422;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1232,104,0
chr2	192248174	rs79897977	T	A	481.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.74;SOR=5.283;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr2	192250543	rs13000398	A	G	3476.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=2.560;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:98:1098,98,0
chr2	192250568	rs13026888	T	C	4381.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=2.494;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1441,129,0
chr2	192250726	rs13018796	G	A	10668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=0.900;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3610,347,0
chr2	192252411	rs7558242	A	G	784.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=6.091;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:176,15,0
chr2	192279327	rs2271767	T	C	10668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=0.770;VQSLOD=17.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3272,333,0
chr2	192701393	rs10167187	A	G	6964.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=119;ExcessHet=3.9794;FS=4.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-1.140e-01;SOR=0.947;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,60:119:99:1635,0,1540
chr2	192701617	rs4461209	A	C	2483.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=31.55;SOR=2.338;VQSLOD=5.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1113,93,0
chr2	192711162	rs4471838	A	C	13409.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.68;DB;DP=168;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-1.170e-01;SOR=0.654;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,168:168:99:5594,504,0
chr2	192711442	rs61735648	G	A	1292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=1.01;SOR=0.738;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,51:118:99:1301,0,1730
chr2	192820810	rs11270301	G	GTGTGTGAATGCT	78.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=2.303;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	192820898	rs7606017	T	G	856.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.50;SOR=4.977;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:497,42,0
chr2	193048895	rs3738882	C	G	571.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.60;ReadPosRankSum=0.524;SOR=1.721;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,105
chr2	193056737	rs3768702	C	A	2891.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.348e+00;DB;DP=103;ExcessHet=3.9794;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=5.000e-03;SOR=0.628;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,61:103:99:1482,0,1021
chr2	196544630	rs35514309	A	C	1190.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.350e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.03;ReadPosRankSum=-4.500e-01;SOR=3.321;VQSLOD=18.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:451,33,0
chr2	196546026	rs6434794	A	G	467.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=2.147;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:134,12,0
chr2	196582816	rs842736	T	C	2268.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=3.360;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:74:831,74,0
chr2	196602614	rs147974774	G	GAAAT	7352.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=76;ExcessHet=3.9794;FS=2.486;MQ=60.00;MQRankSum=0.00;QD=28.39;ReadPosRankSum=-5.350e-01;SOR=0.532;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1564,0,2031
chr2	196619340	rs1866451	T	G	2042.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.19;SOR=4.534;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:602,45,0
chr2	196640893	rs143167079	C	T	95.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-2.720e-01;SOR=1.981;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:104,0,100
chr2	196659034	rs17442764	G	A	242.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=1.90;SOR=1.270;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:251,0,116
chr2	196671191	rs17527292	G	A	311.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:98,0,31
chr2	196673533	rs13411834	A	G	11737.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=0.698;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3568,354,0
chr2	196722541	rs10497771	C	G	753.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.16;ReadPosRankSum=0.464;SOR=2.215;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:182,0,152
chr2	196723434	rs200187568	C	T	1664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e-01;DB;DP=148;ExcessHet=3.0103;FS=3.842;MQ=60.00;MQRankSum=0.00;QD=11.24;ReadPosRankSum=0.335;SOR=0.962;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,69:148:99:1673,0,1901
chr2	196753366	rs147715420	GAT	G	934.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=8;ExcessHet=3.9794;FS=7.067;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.39;ReadPosRankSum=0.992;SOR=0.105;VQSLOD=5.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,3:8:99:111,0,204
chr2	196756535	rs11292337	GA	G	2234.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.92;ReadPosRankSum=1.19;SOR=1.368;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:461,51,0
chr2	196762491	rs5837482	TA	T	569.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DB;DP=46;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.28;ReadPosRankSum=1.15;SOR=0.733;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,17:46:99:253,0,411
chr2	196791276	rs1489802	T	G	903.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.779;SOR=0.646;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:399,0,451
chr2	196822004	rs62623378	A	G	3743.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;DB;DP=100;ExcessHet=6.9897;FS=1.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.673;SOR=0.584;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,51:100:99:1276,0,1228
chr2	196825256	rs115124743	G	C	943.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149e+00;DB;DP=69;ExcessHet=3.0103;FS=4.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.469;SOR=0.736;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:952,0,1007
chr2	196849453	rs17363011	C	T	3020.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682e+00;DB;DP=46;ExcessHet=3.9794;FS=2.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=-4.190e-01;SOR=0.994;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:519,0,685
chr2	196849517	rs17363053	T	C	1336.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=28;ExcessHet=3.9794;FS=3.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=1.80;SOR=1.402;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:307,0,581
chr2	196851911	rs10931715	G	A	2050.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=74;ExcessHet=3.9794;FS=1.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=1.27;SOR=0.853;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,34:74:99:917,0,968
chr2	196866420	rs6434811	C	T	6351.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.146;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1558,159,0
chr2	196883691	rs1519607	A	C	212.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,102
chr2	196891449	rs1072600	T	C	1512.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DB;DP=42;ExcessHet=3.9794;FS=1.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=1.30;SOR=1.155;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:624,0,617
chr2	196912067	rs4850381	A	G	1650.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=55;ExcessHet=3.9794;FS=5.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=1.49;SOR=1.204;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,30:55:99:763,0,652
chr2	196913515	rs59990266	TA	T	236.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,106
chr2	196915991	rs10174065	A	G	1543.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.752;SOR=0.750;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:758,0,773
chr2	196933188	rs13028754	T	C	673.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=27;ExcessHet=3.9794;FS=2.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.245;SOR=1.230;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,8:27:99:186,0,540
chr2	196935811	rs12693777	T	C	1725.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=68;ExcessHet=3.9794;FS=3.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=-8.070e-01;SOR=1.006;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,29:68:99:776,0,1073
chr2	196935990	rs12999766	T	C	59.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.50;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:67:67,0,191
chr2	197002663	rs11676514	C	T	60.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.24;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:68,0,30
chr2	197004439	rs1054537	A	G	1224.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=1.81;SOR=0.713;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,24:58:99:529,0,812
chr2	197008112	rs3052608	T	TCAATA	263.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=0.210;SOR=0.569;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,140
chr2	197008529	rs1568368	C	T	509.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=-7.070e-01;SOR=1.828;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:18:279,0,18
chr2	197010527	rs2271887	A	C	104.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,72
chr2	197010823	rs2271888	C	T	320.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070e-01;DB;DP=17;ExcessHet=3.9794;FS=2.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.81;ReadPosRankSum=1.17;SOR=0.330;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:269,0,164
chr2	197010962	rs7599244	G	A	65.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:73,0,71
chr2	197021141	rs6712829	G	A	299.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.709;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,119
chr2	197021276	rs10931726	T	C	1904.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e-01;DB;DP=67;ExcessHet=3.9794;FS=0.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-6.480e-01;SOR=0.785;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,25:67:99:531,0,1123
chr2	197021372	rs12478353	T	A	1576.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DB;DP=59;ExcessHet=3.9794;FS=0.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.513;SOR=0.791;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,20:59:99:438,0,924
chr2	197065889	rs3795921	A	G	1108.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.573e+00;DB;DP=11;ExcessHet=3.0103;FS=5.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.64;ReadPosRankSum=-2.310e-01;SOR=2.247;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:389,33,0
chr2	197065964	rs3820908	C	A	3265.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.48;DB;DP=42;ExcessHet=3.0103;FS=5.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.93;ReadPosRankSum=0.776;SOR=1.376;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1298,126,0
chr2	197066175	rs4566380	T	G	1364.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.270e-01;DB;DP=14;ExcessHet=3.0103;FS=2.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.33;ReadPosRankSum=1.02;SOR=0.298;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:519,42,0
chr2	197084587	rs1531113	T	C	1029.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.120;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.53;ReadPosRankSum=-9.360e-01;SOR=0.722;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:197084587_T_C:270,18,0:197084587
chr2	197084595	rs1531114	T	C	1068.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.503;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=-1.113e+00;SOR=0.836;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:197084587_T_C:309,21,0:197084587
chr2	197104929	rs10176696	G	A	274.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=4.407;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	197106759	rs2045277	T	C	4107.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;DB;DP=46;ExcessHet=3.0103;FS=1.593;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.721;SOR=0.939;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1417,138,0
chr2	197107082	rs2290511	A	G	314.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.90;ReadPosRankSum=0.967;SOR=3.056;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr2	197118729	rs4850690	C	T	5332.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=0.705;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1855,180,0
chr2	197122493	rs6731238	T	G	2213.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=0.661;SOR=0.664;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1169,108,0
chr2	197122804	rs34136527	AG	A	165.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.55;SOR=3.912;VQSLOD=4.92;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr2	197135806	rs4850693	T	C	1174.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=-8.420e-01;SOR=0.915;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:523,51,0
chr2	197136174	rs35294245	A	AT	127.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.981;VQSLOD=6.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:3:29,3,0
chr2	197171104	rs6729640	G	A	1263.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.973e+00;DB;DP=20;ExcessHet=3.9794;FS=3.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.212;SOR=1.994;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:848,60,0
chr2	197171175	rs4241189	C	T	5974.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.283e+00;DB;DP=61;ExcessHet=3.0103;FS=1.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.45;ReadPosRankSum=-5.300e-01;SOR=0.524;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,61:61:99:1|1:197171175_C_T:2817,190,0:197171175
chr2	197171183	rs12468199	C	T	4423.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=66;ExcessHet=3.9794;FS=1.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=0.175;SOR=0.842;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,66:66:99:1|1:197171175_C_T:2916,199,0:197171175
chr2	197172816	rs2305567	G	A	2458.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.948e+00;DB;DP=21;ExcessHet=3.0103;FS=9.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.13;ReadPosRankSum=-1.303e+00;SOR=0.057;VQSLOD=18.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:772,63,0
chr2	197184321	rs1531111	C	T	11118.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.73;DB;DP=142;ExcessHet=3.0103;FS=0.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=0.393;SOR=0.612;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4336,424,0
chr2	197298222	rs2204641	T	C	5053.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.71;SOR=2.428;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:197298222_T_C:1346,93,0:197298222
chr2	197298232	rs2204640	C	T	4671.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.05;SOR=2.465;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,28:28:84:1|1:197298222_T_C:1259,84,0:197298222
chr2	197504545	rs1879128	C	G	3597.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=109;ExcessHet=1.5490;FS=0.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=0.424;SOR=0.787;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,53:109:99:1364,0,1396
chr2	197504826	rs6434873	A	G	839.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210e-01;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-5.100e-02;SOR=0.957;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:247,0,223
chr2	197530414	rs80092902	A	G	538.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.221e+00;DB;DP=36;ExcessHet=3.0103;FS=5.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-1.401e+00;SOR=0.132;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,23:36:99:547,0,417
chr2	197534692	rs7590083	C	T	5922.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=1.727;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1949,199,0
chr2	197541296	rs17271281	G	A	2501.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.256e+00;DB;DP=58;ExcessHet=1.5490;FS=6.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=0.081;SOR=0.327;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,21:58:99:393,0,1116
chr2	197577448	rs80183667	T	C	823.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707e+00;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=-4.590e-01;SOR=0.652;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,39:81:99:832,0,1074
chr2	197584504	rs2680970	C	T	700.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=-1.001e+00;SOR=1.453;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:87:87,0,239
chr2	197593787	rs2460436	C	T	195.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=3.912;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	197594203	rs2577580	G	C	3205.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;DB;DP=77;ExcessHet=1.5490;FS=0.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=-7.930e-01;SOR=0.577;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,35:77:99:897,0,1089
chr2	197595762	rs2680967	G	A	2696.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.680e-01;DB;DP=56;ExcessHet=1.5490;FS=4.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=-2.441e+00;SOR=1.314;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,33:56:99:824,0,539
chr2	197597012	rs75295851	A	T	811.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=1.5490;FS=4.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=-3.660e-01;SOR=0.615;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,179
chr2	197629320	rs61741430	A	G	886.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.040e-01;DB;DP=76;ExcessHet=3.0103;FS=0.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-9.370e-01;SOR=0.593;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,40:76:99:895,0,826
chr2	197645397	rs76804254	C	T	6828.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e-01;DB;DP=127;ExcessHet=3.9794;FS=2.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=-5.340e-01;SOR=0.875;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,57:127:99:1402,0,1818
chr2	197664521	rs6434886	A	T	1259.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=6.994;VQSLOD=23.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	197758148	rs332299	C	T	607.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.40;SOR=3.383;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:251,21,0
chr2	197777589	rs12693800	C	T	6853.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.301e+00;DB;DP=69;ExcessHet=3.0103;FS=2.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.44;ReadPosRankSum=-2.193e+00;SOR=1.143;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2345,207,0
chr2	197792148	rs11421690	A	AC	1969.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.40;ReadPosRankSum=1.20;SOR=1.209;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,10:12:14:0|1:197792148_A_AC:183,0,14:197792148
chr2	197792152	rs10687155	A	AAC	2840.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.86;ReadPosRankSum=1.45;SOR=1.609;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:12:59:760,59,0
chr2	197792566	rs12693801	C	T	1166.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.54;ReadPosRankSum=-1.485e+00;SOR=2.774;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:364,27,0
chr2	197854233	rs144034091	T	TAC	912.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.765;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.46;ReadPosRankSum=0.746;SOR=3.611;VQSLOD=5.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,13:14:10:502,10,0
chr2	197858129	rs1036542	T	C	1036.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.18;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=0.275;SOR=2.517;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr2	197859867	rs1437867	G	C	808.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.04;SOR=6.184;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	197862903	rs2376209	T	C	982.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.26;SOR=6.439;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:373,27,0
chr2	197863214	rs1966703	C	T	4260.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.029e+00;DB;DP=58;ExcessHet=3.0103;FS=4.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=1.89;SOR=1.297;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1859,174,0
chr2	197863851	rs4850742	C	T	1744.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=2.925;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:643,60,0
chr2	197864996	rs6434897	A	C	2114.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=32.23;SOR=4.693;VQSLOD=5.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:331,27,0
chr2	197866470	rs12478175	T	A	7823.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=0.726;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2107,201,0
chr2	197870808	rs2376211	A	G	836.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.09;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=0.487;SOR=1.942;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:715,51,0
chr2	197872574	rs61752170	C	T	1073.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-5.570e-01;SOR=0.748;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,46:111:99:1082,0,1656
chr2	197872727	rs57048274	T	TTCTC	4265.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.73;SOR=3.306;VQSLOD=5.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1349,90,0
chr2	197873563	rs7565685	T	C	953.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.04;SOR=5.058;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr2	197951615	rs893402	C	T	857.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=6.273;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:268,21,0
chr2	197953372	rs146161383	TAAGTC	T	4945.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.25;SOR=2.712;VQSLOD=4.78;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1529,105,0
chr2	197954780	rs4300850	A	G	5564.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.32;SOR=1.499;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1320,120,0
chr2	197986048	rs2697270	T	C	3355.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=32.90;SOR=1.802;VQSLOD=5.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1468,141,0
chr2	197989945	rs2579395	T	C	2218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=3.538;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:443,36,0
chr2	197990509	rs2579394	G	A	2081.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.647e+00;DB;DP=44;ExcessHet=1.5490;FS=7.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-1.606e+00;SOR=0.261;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1330,132,0
chr2	197990909	rs2918628	G	A	3234.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.39;SOR=4.307;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1248,99,0
chr2	198001443	rs2579387	C	T	2010.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=2.794;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:56:626,56,0
chr2	198011904	rs2249470	G	A	4849.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=1.358;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1772,185,0
chr2	198012407	rs11688574	G	T	225.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.23;ReadPosRankSum=0.00;SOR=2.584;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	198175179	rs112572902	G	C	147.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.43;SOR=1.981;VQSLOD=19.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:164,15,0
chr2	198175297	rs10931780	G	C	4881.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.49;SOR=1.768;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4898,465,0
chr2	198257652	rs11380582	T	TA	870.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=16;ExcessHet=3.0103;FS=6.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=1.08;SOR=2.603;VQSLOD=5.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:16:99:163,0,156
chr2	198257795	rs4685	T	C	6552.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=90;ExcessHet=3.0103;FS=2.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=-1.370e-01;SOR=0.531;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1105,0,1054
chr2	198265173	rs788017	T	A	1263.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=19;ExcessHet=3.0103;FS=4.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=0.254;SOR=2.221;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:140,0,344
chr2	198265350	rs12621129	T	C	241.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=0.375;SOR=1.022;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:250,0,203
chr2	198265526	rs788018	A	G	8902.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=115;ExcessHet=3.0103;FS=7.261;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.58;ReadPosRankSum=0.272;SOR=1.103;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,61:115:99:1575,0,1227
chr2	198266943	rs788019	C	T	2850.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=3.556;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:930,78,0
chr2	198267770	rs3217350	G	GAA	2883.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.43;ReadPosRankSum=-3.660e-01;SOR=0.756;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,14:39:99:486,0,934
chr2	198274929	rs12151767	G	A	183.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=3.611;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	198281743	rs699318	T	C	1562.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.96;ReadPosRankSum=-3.450e-01;SOR=1.487;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:155,0,143
chr2	198283305	rs788023	T	C	4896.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=54;ExcessHet=3.0103;FS=0.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=-3.460e-01;SOR=0.787;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,21:54:99:640,0,782
chr2	198324934	.	CT	C	70.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e+00;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=3.06;ReadPosRankSum=-4.700e-01;SOR=0.357;VQSLOD=5.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:27:79:79,0,354
chr2	198324990	rs787990	A	G	766.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042e+00;DB;DP=13;ExcessHet=1.5490;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=-3.440e-01;SOR=2.303;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:200,0,216
chr2	198338807	.	AC	A	954.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DP=55;ExcessHet=3.0103;FS=2.504;MQ=60.00;MQRankSum=0.00;QD=17.35;ReadPosRankSum=-1.061e+00;SOR=1.130;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,28:55:99:963,0,922
chr2	198355135	rs148517124	T	TTG	2907.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=30;ExcessHet=3.0103;FS=1.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.96;ReadPosRankSum=0.478;SOR=0.543;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,14:30:99:477,0,573
chr2	198362018	rs8539	T	C	5620.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=0.063;SOR=0.746;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,28:48:99:933,0,508
chr2	198365043	rs1116734	C	G	1285.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.890e-01;DB;DP=20;ExcessHet=3.0103;FS=1.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=1.07;SOR=1.460;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:176,0,383
chr2	198380635	rs75909202	C	T	516.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-1.067e+00;SOR=0.576;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:240,0,260
chr2	198498316	rs1979239	T	G	977.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.38;ReadPosRankSum=0.524;SOR=4.174;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:116,0,66
chr2	198508951	rs10497806	G	A	12005.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DB;DP=156;ExcessHet=3.0103;FS=0.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=0.572;SOR=0.749;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,60:156:99:1302,0,2320
chr2	198511086	rs16866970	G	A	4069.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=55;ExcessHet=3.9794;FS=0.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=1.11;SOR=0.759;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:739,0,785
chr2	198540312	.	C	CA	251.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DP=3;ExcessHet=6.9897;FS=0.000;MQ=59.12;MQRankSum=-3.660e-01;QD=14.78;ReadPosRankSum=-7.120e-01;SOR=1.179;VQSLOD=0.304;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:0,2:3:12:38,0,12
chr2	198540354	rs9288279	C	A	198.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.18;SOR=3.912;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	198563642	rs6743671	T	C	63.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.03;ReadPosRankSum=-2.310e-01;SOR=0.446;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:72:72,0,148
chr2	198572076	rs3832092	A	ATTC	2520.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=59;ExcessHet=3.9794;FS=2.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.055;SOR=0.925;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,21:59:99:767,0,1850
chr2	198593459	rs5837554	AT	A	429.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=1.31;SOR=3.126;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:50:158,0,50
chr2	198643631	rs700655	G	A	6194.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=98;ExcessHet=3.9794;FS=2.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=-2.000e-02;SOR=0.527;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,55:98:99:1349,0,974
chr2	198649628	rs148280559	G	C	181.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-9.760e-01;SOR=0.223;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:190,0,184
chr2	198669871	rs770658	G	C	1068.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=1.07;SOR=0.551;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:207,0,297
chr2	198675138	.	T	A	389.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.567e+00;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.33;ReadPosRankSum=1.40;SOR=0.892;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:398,0,118
chr2	198866620	rs72928581	G	A	1142.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e-01;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=-3.680e-01;SOR=0.793;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:212,0,253
chr2	198950240	rs1064213	G	A	6049.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e-01;DB;DP=84;ExcessHet=3.9794;FS=5.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=-5.510e-01;SOR=0.987;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1251,0,961
chr2	199011927	rs147019933	A	AGTGTGTGT	217.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.97;SOR=2.303;VQSLOD=4.08;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	200137608	rs2881208	T	C	118.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=2.833;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	200173684	rs10153730	T	G	15750.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=1.527;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5259,485,0
chr2	200245245	rs1348813	C	G	4758.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=1.819;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1683,150,0
chr2	200262867	rs1466032	A	G	791.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.06;SOR=6.184;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr2	200298313	rs7596597	A	G	4099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=1.934;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1288,120,0
chr2	200321050	rs13014796	G	A	96.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.383e+00;SOR=0.148;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,73
chr2	200323452	rs114693875	A	G	3478.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.248;DB;DP=118;ExcessHet=6.9897;FS=2.420;MQ=59.93;MQRankSum=0.926;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-4.100e-01;SOR=0.840;VQSLOD=2.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:65,53:118:99:1309,0,1649
chr2	200625581	rs2346586	T	C	2534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;DB;DP=115;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-2.100e-02;SOR=0.687;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,60:115:99:1482,0,1338
chr2	200677625	rs2030653	C	T	1191.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.05;ReadPosRankSum=0.601;SOR=3.321;VQSLOD=19.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:184,0,182
chr2	200684249	.	T	TA	287.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.453;DP=25;ExcessHet=6.9897;FS=5.352;MQ=60.00;MQRankSum=0.00;QD=2.91;ReadPosRankSum=-5.990e-01;SOR=1.530;VQSLOD=4.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,12:25:99:196,0,237
chr2	200710706	rs769960	T	G	2155.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=36;ExcessHet=3.9794;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=0.603;SOR=1.071;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:544,0,455
chr2	200800493	rs6435039	A	G	826.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.66;SOR=6.184;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	200820505	rs281766	T	G	5497.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=90;ExcessHet=3.0103;FS=0.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=-2.431e+00;SOR=0.597;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,38:90:99:1029,0,1346
chr2	200872831	rs2136585	T	C	212.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.40;ReadPosRankSum=0.319;SOR=2.584;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:108,0,28
chr2	200872942	rs6414157	C	T	939.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.510;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.37;ReadPosRankSum=0.175;SOR=1.545;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:176,0,135
chr2	200873144	rs113489455	AATACAAAAAAAACTTG	A	2723.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=45;ExcessHet=1.5490;FS=4.609;MQ=60.00;MQRankSum=0.00;QD=30.27;ReadPosRankSum=-5.290e-01;SOR=1.306;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,19:45:99:720,0,4351
chr2	201171014	rs3739121	G	C	480.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DB;DP=45;ExcessHet=3.0103;FS=1.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-3.310e-01;SOR=0.895;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,20:45:99:489,0,576
chr2	201171191	rs10931898	C	G	1143.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.920e-01;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.22;ReadPosRankSum=-1.335e+00;SOR=0.656;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,52:139:99:1152,0,2339
chr2	201171207	rs12614621	G	C	1216.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e-01;DB;DP=142;ExcessHet=3.0103;FS=0.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-1.403e+00;SOR=0.807;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,55:142:99:1225,0,2291
chr2	201171355	rs12618057	T	C	220.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=3.33;SOR=0.693;VQSLOD=21.62;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:227,0,231
chr2	201194279	rs3739119	C	A	211.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178e+00;DB;DP=19;ExcessHet=3.0103;FS=2.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-1.437e+00;SOR=1.751;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:220,0,391
chr2	201254049	rs3820881	G	C	7764.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.110e+00;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=-1.239e+00;SOR=0.719;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2958,308,0
chr2	201254277	rs842824	A	G	858.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.35;ReadPosRankSum=1.07;SOR=4.174;VQSLOD=14.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:379,30,0
chr2	201277181	rs6706953	T	C	3495.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=39;ExcessHet=3.9794;FS=1.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=1.35;SOR=0.902;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:628,0,416
chr2	201277321	rs2083119	C	T	87.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.53;ReadPosRankSum=-1.890e-01;SOR=0.330;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:24:24,0,155
chr2	201280996	.	CA	C	1605.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-01;DP=19;ExcessHet=3.9794;FS=5.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=-1.279e+00;SOR=0.168;VQSLOD=6.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,11:19:99:231,0,102
chr2	201284433	rs11382340	A	AT	74.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.63;ReadPosRankSum=-1.036e+00;SOR=0.527;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:41,6,0
chr2	201342238	.	TA	T	364.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-02;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=0.00;QD=9.34;ReadPosRankSum=0.734;SOR=0.910;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:61:73,0,61
chr2	201354676	rs16833578	A	G	569.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DB;DP=46;ExcessHet=3.0103;FS=1.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-1.132e+00;SOR=0.404;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:578,0,626
chr2	201354935	rs3795969	C	G	6459.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.548;DB;DP=143;ExcessHet=1.5490;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.851;SOR=0.684;VQSLOD=6.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,64:143:99:1663,0,2060
chr2	201371768	rs3739116	G	T	12244.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=1.012;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3087,320,0
chr2	201397569	rs842940	G	A	1486.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.32;ReadPosRankSum=0.446;SOR=3.258;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,118
chr2	201397647	rs842939	A	C	3139.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=24;ExcessHet=3.9794;FS=3.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.32;ReadPosRankSum=0.580;SOR=1.253;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:243,0,379
chr2	201437214	rs17532679	A	G	4463.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050e-01;DB;DP=83;ExcessHet=6.9897;FS=4.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.791;SOR=0.718;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,37:83:99:984,0,1325
chr2	201437334	rs12052989	T	C	10466.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=0.830;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3091,302,0
chr2	201440939	rs66861543	CT	C	659.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-02;DB;DP=27;ExcessHet=3.9794;FS=4.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=1.68;SOR=1.409;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,15:27:99:348,0,246
chr2	201440948	rs71749023	TTC	T	726.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DB;DP=27;ExcessHet=6.9897;FS=2.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-1.518e+00;SOR=0.394;VQSLOD=6.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,9:27:99:195,0,551
chr2	201441133	rs12470563	T	C	67.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:74:75,0,74
chr2	201445152	rs4674194	C	T	1151.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.543;SOR=0.703;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:293,36,0
chr2	201451006	rs4470327	C	T	6790.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=1.065;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1935,203,0
chr2	201460104	rs7597590	A	G	1908.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=81;ExcessHet=3.9794;FS=8.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-4.980e-01;SOR=1.388;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,37:81:99:976,0,1083
chr2	201460316	rs2463489	G	T	31.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.90;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:39:0|1:201460316_G_T:39,0,64:201460316
chr2	201460322	rs2463490	T	C	314.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.86;SOR=4.407;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:201460316_G_T:152,12,0:201460316
chr2	201462357	rs1405984	C	T	1125.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.863e+00;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-8.990e-01;SOR=0.678;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:325,0,404
chr2	201464295	rs10179964	T	C	3748.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.690e-01;DB;DP=103;ExcessHet=6.9897;FS=9.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=-8.660e-01;SOR=1.218;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,57:103:99:1399,0,1176
chr2	201466732	rs6742109	T	C	379.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-8.760e-01;SOR=0.368;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:98:109,0,98
chr2	201466954	rs2248130	C	G	2880.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=114;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.975;SOR=0.696;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,55:114:99:1378,0,1374
chr2	201468732	rs2293525	C	G	3097.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;DB;DP=103;ExcessHet=3.9794;FS=3.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.365;SOR=0.496;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,46:103:99:1166,0,1523
chr2	201469044	rs2293526	T	A	475.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.950e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.123;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:320,0,136
chr2	201469149	rs2293528	A	G	211	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=3;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=0.524;SOR=1.061;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	201470233	rs35086177	ATTTT	A	1538.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=30;ExcessHet=3.9794;FS=1.037;MQ=60.00;MQRankSum=0.00;QD=20.25;ReadPosRankSum=1.41;SOR=0.978;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,15:30:99:550,0,450
chr2	201473674	rs2470902	G	A	2177.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=1.926;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:597,54,0
chr2	201474179	rs17593811	C	T	1655.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e+00;DB;DP=76;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=-4.510e-01;SOR=0.712;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:826,0,1048
chr2	201474234	rs10497865	C	T	1860.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=52;ExcessHet=3.9794;FS=3.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-1.400e+00;SOR=0.416;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,31:52:99:818,0,458
chr2	201476430	rs56096001	AT	A,ATT	520.35	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.79;ReadPosRankSum=-7.550e-01;SOR=3.477;VQSLOD=3.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,4:9:82:185,82,97,126,0,149
chr2	201478228	rs7572503	A	G	267.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=0.00;SOR=1.270;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	201478264	rs2465665	G	A	595.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.92;ReadPosRankSum=1.28;SOR=1.220;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:30:0|1:201478264_G_A:165,0,30:201478264
chr2	201478286	rs7560168	T	C	506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=1.93;SOR=0.255;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:95:0|1:201478264_G_A:181,0,95:201478264
chr2	201478896	rs6754573	G	A	1062.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.170e-01;DB;DP=14;ExcessHet=6.9897;FS=2.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=-1.290e-01;SOR=1.115;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:183,0,203
chr2	201478937	rs6712290	T	G	1071.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=3.841;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	201485747	rs6761252	G	T	2144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496e+00;DB;DP=48;ExcessHet=6.9897;FS=0.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.290;SOR=0.628;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:762,0,633
chr2	201488758	rs2348021	A	G	3892.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-02;DB;DP=62;ExcessHet=3.9794;FS=5.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=0.167;SOR=0.878;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:790,0,632
chr2	201501431	rs17533238	A	G	389.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.241e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=1.29;SOR=1.493;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:96:166,0,96
chr2	201501568	rs4622702	A	G	1300.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=34;ExcessHet=3.9794;FS=0.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=1.33;SOR=0.536;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:508,0,535
chr2	201502898	rs2470900	G	A	247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DB;DP=19;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-6.950e-01;SOR=1.532;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:256,0,252
chr2	201503176	rs2465663	A	G	765.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=16;ExcessHet=1.5490;FS=1.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=-1.305e+00;SOR=1.329;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:607,48,0
chr2	201505953	rs11887334	C	T	1290.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.492;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=-8.740e-01;SOR=0.733;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:696,69,0
chr2	201507154	rs12988162	T	A	954.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=1.13;SOR=1.022;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:612,60,0
chr2	201515939	rs868810	T	C	2392.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.197e+00;DB;DP=29;ExcessHet=3.0103;FS=10.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=-1.417e+00;SOR=2.670;VQSLOD=15.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:275,0,575
chr2	201521383	rs2287012	T	C	376.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.54;ReadPosRankSum=0.697;SOR=1.329;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr2	201521485	rs78781132	C	T	1038.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=1.12;SOR=0.706;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:440,0,305
chr2	201521509	rs76083840	C	T	1601.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=35;ExcessHet=3.9794;FS=3.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=-8.200e-01;SOR=1.148;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,22:35:99:662,0,334
chr2	201521731	rs4674302	A	G	853.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=1.47;SOR=0.941;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:297,0,399
chr2	201523736	rs10931910	A	G	913.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.44;SOR=4.255;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:203,18,0
chr2	201526330	rs55754655	A	G	3101.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=111;ExcessHet=3.9794;FS=0.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.10;SOR=0.776;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,56:111:99:1375,0,1286
chr2	201526368	rs41270243	C	G	2955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DB;DP=121;ExcessHet=3.9794;FS=3.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.817;SOR=0.515;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,59:121:99:1376,0,1493
chr2	201531260	rs2287010	C	A	388.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr2	201535646	rs2540065	C	T	775.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=5.994;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:253,18,0
chr2	201541827	rs16834027	G	A	1011.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.181e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=-1.692e+00;SOR=0.446;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:270,0,208
chr2	201677454	rs2270281	C	T	4447.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=1.749;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:871,75,0
chr2	201677791	rs2270280	T	C	8693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=0.842;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2824,243,0
chr2	201679931	rs12475785	G	T	11107.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=1.002;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3255,318,0
chr2	201683695	rs2881880	T	C	3189.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=1.103;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1341,135,0
chr2	201686122	rs3815501	T	C	11675.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=1.564;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3390,334,0
chr2	201686666	rs6705053	C	T	2565.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.20;SOR=3.321;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:769,60,0
chr2	201719258	rs5837758	CA	C	1154.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.220e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=1.57;SOR=1.148;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,14:15:20:320,20,0
chr2	201724360	rs12465952	A	G	1591.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=41;ExcessHet=3.9794;FS=1.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=0.460;SOR=0.951;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:566,0,563
chr2	201736287	rs201382755	G	A	657.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.920e-01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.30;ReadPosRankSum=0.118;SOR=0.957;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:666,0,491
chr2	201928485	rs10206365	A	G	4423.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=59.87;QD=32.06;SOR=0.752;VQSLOD=3.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1454,138,0
chr2	202009983	rs41271457	G	A	101.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-5.450e-01;SOR=0.693;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:110,0,127
chr2	202025131	rs2518142	G	A	5612.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.07;DB;DP=87;ExcessHet=3.9794;FS=0.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=-3.160e-01;SOR=0.747;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2703,259,0
chr2	202025621	rs1594	A	G	2145.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=76;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.16;SOR=0.696;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,43:76:99:1178,0,744
chr2	202050677	rs3900115	A	G	2070.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.560e-01;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=1.14;SOR=0.722;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:679,0,822
chr2	202070735	rs6712872	A	T	204.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=11;ExcessHet=3.9794;FS=3.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=1.59;SOR=1.574;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:73:73,0,272
chr2	202073764	.	C	CT	383.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DP=25;ExcessHet=6.9897;FS=0.800;MQ=59.85;MQRankSum=0.00;QD=3.49;ReadPosRankSum=-9.370e-01;SOR=0.859;VQSLOD=5.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:25:99:99,0,279
chr2	202074098	rs13010627	G	A	1431.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.719;SOR=0.716;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,50:90:99:1440,0,1011
chr2	202082459	rs13006529	T	A	2103.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=75;ExcessHet=3.9794;FS=0.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-3.170e-01;SOR=0.756;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,38:75:99:1047,0,882
chr2	202122995	rs3769823	A	G	2415.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870e-01;DB;DP=61;ExcessHet=1.5490;FS=0.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=0.349;SOR=0.616;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,21:61:99:422,0,1046
chr2	202141838	rs36043647	T	C	68.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.05;SOR=2.303;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	202142425	rs71684716	AT	A	433.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-02;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.58;ReadPosRankSum=-3.900e-02;SOR=0.632;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,7:30:99:124,0,377
chr2	202151163	rs3769818	A	G	4774.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=110;ExcessHet=1.5490;FS=1.832;MQ=59.96;MQRankSum=-1.161e+00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=-2.700e-01;SOR=0.550;VQSLOD=2.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,46:110:99:1043,0,1542
chr2	202151400	rs17860428	G	A	484.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.675;SOR=0.765;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:365,0,157
chr2	202151439	rs3185378	G	C	295.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.44;ReadPosRankSum=-1.973e+00;SOR=0.269;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:79:79,0,303
chr2	202152162	rs13113	T	A	1914.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.286;SOR=0.685;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,35:58:99:953,0,627
chr2	202153225	rs700635	C	A	874.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=9;ExcessHet=1.5490;FS=3.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=0.475;SOR=2.262;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:133,0,111
chr2	202153252	rs700636	A	C	786.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=1.12;SOR=1.003;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:382,0,227
chr2	202195030	rs1406121	T	C	754.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=-5.140e-01;SOR=0.859;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:394,0,351
chr2	202211443	rs1406122	C	T	2360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.139;SOR=0.653;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,37:71:99:1014,0,847
chr2	202211695	rs12472273	G	A	230.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.524;SOR=1.609;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:72:72,0,108
chr2	202212949	rs114465540	C	G	1990.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170e-01;DB;DP=51;ExcessHet=3.9794;FS=2.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=1.44;SOR=0.800;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,21:51:99:0|1:202212949_C_G:791,0,1739:202212949
chr2	202212950	rs116547819	C	T	1990.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070e+00;DB;DP=51;ExcessHet=3.9794;FS=2.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=1.34;SOR=0.773;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,21:51:99:0|1:202212949_C_G:791,0,1739:202212949
chr2	202215409	rs71022364	C	CAAAACAAAACAAAACAA	574.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=17;ExcessHet=3.9794;FS=1.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=1.93;SOR=0.283;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,4:17:99:129,0,731
chr2	202215492	rs13014235	C	G	1733.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DB;DP=38;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=-1.272e+00;SOR=0.610;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,8:38:99:122,0,680
chr2	202245244	rs3795966	A	G	1876.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=44;ExcessHet=6.9897;FS=1.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-6.740e-01;SOR=0.856;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:455,0,804
chr2	202245944	rs3832088	TAA	T	2109.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.530e-01;DB;DP=23;ExcessHet=6.9897;FS=0.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=0.014;SOR=0.934;VQSLOD=7.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,14:23:99:509,0,338
chr2	202245955	rs72937131	A	G	2102.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DB;DP=24;ExcessHet=6.9897;FS=5.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=0.264;SOR=1.380;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:509,0,387
chr2	202246034	rs3731709	G	C	566.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=6.9897;FS=6.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-8.420e-01;SOR=2.572;VQSLOD=18.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:132,0,66
chr2	202248788	rs7579617	T	C	1876.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=44;ExcessHet=6.9897;FS=11.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.171;SOR=1.674;VQSLOD=16.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,27:44:99:708,0,365
chr2	202248979	rs7579853	T	A	1514.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-02;DB;DP=30;ExcessHet=6.9897;FS=5.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-5.270e-01;SOR=1.177;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:325,0,487
chr2	202249060	rs2540328	C	T	444.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.070;SOR=0.963;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:213,0,153
chr2	202252539	rs2244438	G	A	1774.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-02;DB;DP=66;ExcessHet=3.9794;FS=2.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.652;SOR=0.503;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,27:66:99:588,0,963
chr2	202252856	rs2540330	T	C	819.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=30;ExcessHet=3.9794;FS=1.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.749;SOR=1.030;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:453,0,366
chr2	202252873	rs2540331	A	C	657.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=21;ExcessHet=3.9794;FS=1.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=0.507;SOR=1.179;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:356,0,200
chr2	202254288	rs3214366	A	AC	610.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.770e-01;DB;DP=8;ExcessHet=6.9897;FS=3.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=0.172;SOR=0.287;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:56:214,0,56
chr2	202257930	rs3815515	C	A	1117.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-5.550e-01;SOR=0.330;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:210,0,280
chr2	202259850	rs2110689	A	G	723.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=2.948;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:300,24,0
chr2	202259903	rs144631526	AC	A	599.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-5.970e-01;SOR=0.892;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:99:422,0,146
chr2	202260049	rs2256584	G	A	8991.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=0.959;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3068,308,0
chr2	202264156	rs13022344	C	T	4580.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103e+00;DB;DP=132;ExcessHet=6.9897;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-8.990e-01;SOR=0.591;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,67:132:99:1548,0,1676
chr2	202264316	rs6732993	C	T	1309.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.039e+00;DB;DP=24;ExcessHet=6.9897;FS=6.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=0.894;SOR=0.130;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:411,0,344
chr2	202272032	rs11691865	T	A	829.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-9.370e-01;SOR=1.678;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:196,0,399
chr2	202284236	rs113582398	C	CTTAAT	6047.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e-01;DB;DP=79;ExcessHet=3.9794;FS=10.550;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.76;ReadPosRankSum=1.63;SOR=0.314;VQSLOD=3.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:44,35:79:99:1362,0,2653
chr2	202285100	rs4507084	A	G	5259.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=53;ExcessHet=3.9794;FS=0.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=0.817;SOR=0.613;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,35:53:99:1069,0,489
chr2	202325632	rs57250433	G	GT	398.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.23;ReadPosRankSum=0.116;SOR=1.264;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:9:96,0,9
chr2	202337730	rs1019299	A	G	2372.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DB;DP=24;ExcessHet=3.9794;FS=2.412;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=1.50;SOR=0.486;VQSLOD=6.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:243,0,288
chr2	202342402	rs12990557	G	T	4855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=105;ExcessHet=6.9897;FS=13.138;MQ=56.31;MQRankSum=-8.550e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.556;SOR=1.219;VQSLOD=-8.335e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,33:105:99:910,0,2083
chr2	202342737	rs10460403	A	G	1239.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380e-01;DB;DP=12;ExcessHet=6.9897;FS=0.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=0.396;SOR=0.486;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:173,0,206
chr2	202342802	rs2243791	T	C	607.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.27;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=1.18;SOR=0.852;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:266,0,269
chr2	202344179	rs79972973	GT	G	4382.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.21;SOR=1.248;VQSLOD=3.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1398,149,0
chr2	202352649	rs2714481	A	G	985.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=0.480;SOR=0.952;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:465,0,195
chr2	202352733	rs965675	A	T	129.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,71
chr2	202357949	rs2714482	A	C	10529.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.91;ReadPosRankSum=1.23;SOR=0.269;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,102:103:99:3255,297,0
chr2	202360408	rs10635962	G	GT	258.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=59.56;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=0.170;SOR=0.892;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:44:44,0,46
chr2	202402250	rs3083390	AAC	A	1358.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=26;ExcessHet=3.9794;FS=4.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-1.740e+00;SOR=0.321;VQSLOD=6.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,16:26:99:554,0,365
chr2	202410055	rs12611502	T	C	66.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=1.10;SOR=0.223;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:75:75,0,105
chr2	202410079	rs10931954	G	T	66.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.75;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=8.29;ReadPosRankSum=-5.450e-01;SOR=0.693;VQSLOD=0.673;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:75:75,0,101
chr2	202410147	rs10931955	C	A	264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-7.980e-01;SOR=0.512;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:273,0,394
chr2	202410300	rs10804117	A	T	424.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.574;SOR=0.905;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:433,0,552
chr2	202430428	.	ATT	ATTT,A	499.86	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.137;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=0.201;SOR=0.938;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,5,11:25:4:255,242,400,4,0,169
chr2	202439790	rs138295994	A	AGAG	49.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.830e-01;DB;DP=14;ExcessHet=3.0103;FS=4.027;MQ=60.00;MQRankSum=0.00;QD=3.52;ReadPosRankSum=0.546;SOR=0.072;VQSLOD=5.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:58:58,0,416
chr2	202447009	rs13425990	C	T	378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.485e+00;DB;DP=21;ExcessHet=3.0103;FS=2.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=-9.780e-01;SOR=0.180;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:387,0,252
chr2	202468136	rs10205247	T	A	563.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=11;ExcessHet=3.9794;FS=8.870;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=-1.790e-01;SOR=0.052;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:230,0,131
chr2	202469118	rs4673203	G	A	681.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.40;SOR=5.784;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr2	202469361	rs12474206	C	T	4558.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=1.002;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:961,99,0
chr2	202469472	rs7572583	A	G	1650.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.14;SOR=3.033;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	202483475	.	GA	G	36.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.06;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:45:45,0,45
chr2	202484003	rs57529495	G	GC	2828.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.20;SOR=6.439;VQSLOD=6.46;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,21:21:63:785,63,0
chr2	202491995	rs2540450	G	A	3172.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382e+00;DB;DP=127;ExcessHet=3.9794;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-6.900e-02;SOR=0.758;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,62:127:99:1446,0,1663
chr2	202499683	rs56162425	C	G	4236.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.493e+00;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=0.913;SOR=0.724;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:605,0,844
chr2	202501448	rs1208081	T	C	2368.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.208;SOR=0.741;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:751,0,442
chr2	202505545	rs56321285	G	A	839.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.360e-01;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=-5.730e-01;SOR=0.483;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:169,0,274
chr2	202507982	rs6723016	T	C	6959.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;DB;DP=161;ExcessHet=6.9897;FS=4.060;MQ=59.84;MQRankSum=-8.760e-01;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.660;SOR=0.828;VQSLOD=1.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,90:161:99:2210,0,1759
chr2	202509814	rs3754932	T	C	1194.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.070e-01;DB;DP=35;ExcessHet=6.9897;FS=1.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-4.840e-01;SOR=0.427;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:433,0,496
chr2	202523511	rs11443110	A	AT	406.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.65;ReadPosRankSum=-3.800e-01;SOR=1.220;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:75:75,0,75
chr2	202523547	rs7602825	A	G	285.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=7;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=0.589;SOR=0.180;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:149,0,102
chr2	202524879	rs56116031	T	G	373.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=0.968;SOR=1.292;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:53:53,0,169
chr2	202525943	rs11400020	C	CT	52.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.53;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=5.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:21:60,0,21
chr2	202526366	rs62193397	G	A	910.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=0.145;SOR=0.446;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:454,0,267
chr2	202526589	rs1208077	T	A	1805.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=7.658;VQSLOD=24.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:639,48,0
chr2	202528830	rs74887695	A	AT	8536.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=143;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-1.570e-01;SOR=0.661;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4556,433,0
chr2	202531136	rs17384314	G	C	1149.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.847;SOR=0.767;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:562,0,810
chr2	202531264	rs62193398	T	C	562.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DB;DP=21;ExcessHet=3.9794;FS=3.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.854;SOR=0.428;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:266,0,241
chr2	202534280	rs376804817	AATGACTATCACACTACT	A	976.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=22.52;SOR=6.273;VQSLOD=4.84;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:202534280_AATGACTATCACACTACT_A:225,15,0:202534280
chr2	202534303	rs145833090	TATAGGAAGAGCTTAA	T	1247.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.42;SOR=6.804;VQSLOD=3.86;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:202534280_AATGACTATCACACTACT_A:379,27,0:202534280
chr2	202538300	rs11375204	G	GA	2011.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=66;ExcessHet=3.9794;FS=1.292;MQ=60.00;MQRankSum=0.00;QD=11.43;ReadPosRankSum=0.317;SOR=0.863;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,34:66:99:796,0,714
chr2	202545374	rs16837990	G	C	638.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=-5.280e-01;SOR=0.536;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:250,0,298
chr2	202546113	rs1208073	T	C	2523.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=3.086;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:659,57,0
chr2	202549626	rs1812933	A	G	802.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.647e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=58.95;MQRankSum=-6.230e-01;QD=25.09;ReadPosRankSum=2.11;SOR=0.693;VQSLOD=-8.026e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:298,27,0
chr2	202549666	rs1812932	A	C	508.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=59.35;MQRankSum=-3.550e-01;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.979;SOR=0.813;VQSLOD=0.539;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:272,0,356
chr2	202549684	.	GA	G	1722.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DP=43;ExcessHet=6.9897;FS=1.826;MQ=59.64;MQRankSum=0.331;QD=12.95;ReadPosRankSum=0.505;SOR=0.462;VQSLOD=0.446;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,23:43:99:518,0,433
chr2	202549931	.	CTCAATCAATGCAGCTCTGGTCTTTCAATCAATGCAGCTCTGGTCTTTCAATCAATGCAGCTCTGGTCTT	C,CTCAATCAATGCAGCTCTGGTCTTTCAATCAATGCAGCTCTGGTCTT	713.11	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.59;SOR=6.804;VQSLOD=5.20;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,8,2:10:87:424,87,139,337,0,328
chr2	202557702	rs6725443	C	T	7718.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=1.729;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2211,207,0
chr2	202557904	rs2540425	C	T	660.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.20;SOR=4.294;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	202566741	rs7603563	T	C	1402.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=3.442;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:471,36,0
chr2	202569654	rs7598082	C	A	579.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.38;SOR=3.126;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	202569992	rs3219171	A	T	8280.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.12;SOR=0.709;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2017,186,0
chr2	202570232	rs3219170	A	G	2273.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=2.531;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:626,57,0
chr2	202574825	rs1210940	C	T	1504.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.03;SOR=5.084;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:558,42,0
chr2	202574906	rs11407264	A	AT	228.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=2.833;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr2	202575821	rs3219168	G	A	6878.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=0.829;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1764,165,0
chr2	202575907	rs2882231	A	G	4026.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.754;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.56;ReadPosRankSum=-9.360e-01;SOR=0.641;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1222,117,0
chr2	202580268	rs10469756	T	C	1258.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=6.994;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:266,21,0
chr2	202580370	rs3219167	G	A	4954.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.966e+00;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.98;ReadPosRankSum=1.68;SOR=0.801;VQSLOD=6.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2469,211,0
chr2	202594039	rs13029960	A	G	522.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.49;ReadPosRankSum=0.095;SOR=1.981;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr2	202598113	rs2276615	C	T	4803.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.246e+00;DB;DP=63;ExcessHet=3.0103;FS=2.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=-4.900e-02;SOR=0.473;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1913,189,0
chr2	202603147	rs3731704	A	G	712.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.253;SOR=3.611;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr2	202606193	rs10451572	C	T	222.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=3.912;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr2	202606639	rs3731703	G	A	2086.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=20;ExcessHet=3.0103;FS=1.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=1.27;SOR=1.190;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:687,60,0
chr2	202608877	rs4673207	C	A	2169.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=22;ExcessHet=3.0103;FS=1.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=0.232;SOR=1.195;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:842,66,0
chr2	202614219	rs7561225	G	C	424.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=-6.740e-01;SOR=2.833;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr2	202625615	rs3219156	C	T	8577.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.97;SOR=1.276;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2181,208,0
chr2	202688190	rs6435109	A	G	856.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.87;SOR=6.091;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr2	202688293	rs4675229	A	G	3639.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=2.549;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1300,111,0
chr2	202698422	rs147493518	ATCT	A	369.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.56;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=0.469;SOR=0.957;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:113,0,193
chr2	202712095	rs917958	A	C	5662.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=1.161;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1516,157,0
chr2	202741064	rs2072504	G	A	2297.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.60;DB;DP=35;ExcessHet=3.9794;FS=1.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=-1.240e-01;SOR=0.495;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:793,0,301
chr2	202741256	rs4675235	A	T	11398.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=112;ExcessHet=3.0103;FS=2.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=1.44;SOR=0.566;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,112:112:99:1|1:202741256_A_T:4891,340,0:202741256
chr2	202741269	rs4675236	G	A	11050.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.510e-01;DB;DP=107;ExcessHet=3.0103;FS=1.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.79;ReadPosRankSum=0.427;SOR=0.566;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,107:107:99:1|1:202741256_A_T:4788,331,0:202741256
chr2	202745054	rs12619693	C	G	232.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=0.598;SOR=0.293;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:96,0,112
chr2	202901235	rs13034206	C	T	1935.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.703e+00;DB;DP=43;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-1.370e-01;SOR=0.527;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:588,0,984
chr2	202901279	rs13034579	G	T	758.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.940e-01;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-8.210e-01;SOR=0.501;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:163,0,442
chr2	202939654	rs10221698	T	C	1716.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=48;ExcessHet=6.9897;FS=4.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=1.60;SOR=1.045;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:574,0,704
chr2	202939836	rs16838742	G	C	1034.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=33;ExcessHet=3.9794;FS=11.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.677;SOR=2.015;VQSLOD=16.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:508,0,400
chr2	202955454	rs1568535	G	C	14159.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=208;ExcessHet=3.9794;FS=1.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=0.186;SOR=0.603;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,116:208:99:3406,0,2296
chr2	202961958	rs12693958	C	T	821.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=0.947;SOR=0.473;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:87:189,0,87
chr2	202962310	rs11288166	CT	C	691.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DB;DP=18;ExcessHet=6.9897;FS=9.647;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=0.152;SOR=2.977;VQSLOD=2.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,8:18:99:169,0,123
chr2	202962358	rs6435124	G	C	1085.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.52;MQRankSum=0.967;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.824;SOR=1.609;VQSLOD=-3.320e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:309,0,133
chr2	202964380	rs2882486	G	A	3685.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=55;ExcessHet=3.9794;FS=4.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.265;SOR=0.460;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,15:55:99:328,0,1014
chr2	202964528	rs2350722	T	C	4238.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=69;ExcessHet=3.9794;FS=5.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=-6.070e-01;SOR=0.411;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,23:69:99:476,0,1166
chr2	202964986	rs6755174	C	A	3470.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-02;DB;DP=72;ExcessHet=3.9794;FS=9.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=1.19;SOR=1.313;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,41:72:99:913,0,881
chr2	202965222	rs6726731	A	G	2097.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=20;ExcessHet=3.9794;FS=4.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=1.44;SOR=1.387;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:319,0,288
chr2	202965360	rs6755553	C	T	427.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=0.230;SOR=0.776;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:97:97,0,188
chr2	202974099	rs12611699	G	A	510.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.542;SOR=0.495;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:259,0,147
chr2	202974360	rs12615065	T	G	2434.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=94;ExcessHet=3.9794;FS=3.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-3.380e-01;SOR=1.014;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,55:94:99:1388,0,942
chr2	202989742	rs56243480	G	A	386.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=0.652;SOR=0.368;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,127
chr2	202990187	rs4675261	A	G	3250.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=35;ExcessHet=3.0103;FS=0.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=1.31;SOR=0.613;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1202,105,0
chr2	202990704	rs56046075	T	C	536.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=53.75;MQRankSum=1.04;NEGATIVE_TRAIN_SITE;QD=33.53;ReadPosRankSum=0.524;SOR=2.584;VQSLOD=-1.760e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:301,21,0
chr2	203003066	rs3043926	G	GGTGT	2157.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.21;ReadPosRankSum=1.69;SOR=0.887;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:2,21:23:20:1|1:203003066_G_GGTGT:768,20,0:203003066
chr2	203003085	rs16838883	T	C	1032.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=1.44;SOR=0.780;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:585,0,280
chr2	203029951	rs7582695	T	A	1754.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.710;DB;DP=38;ExcessHet=1.5490;FS=4.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=0.178;SOR=1.418;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:392,0,542
chr2	203049750	rs2204880	A	G	453.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=5.136;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr2	203051886	rs6722588	C	T	1880.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.777e+00;DB;DP=23;ExcessHet=3.0103;FS=7.373;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=0.540;SOR=0.097;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:745,69,0
chr2	203052947	rs35468542	G	A	537.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=36;ExcessHet=3.9794;FS=3.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=2.27;SOR=1.079;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,14:36:99:257,0,502
chr2	203058233	rs13024221	T	C	1122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.940e-01;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-5.330e-01;SOR=0.636;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:501,0,456
chr2	203058861	rs34823131	A	G	1222.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-2.740e-01;SOR=0.765;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:506,0,492
chr2	203059214	rs35979364	A	AT	52.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.13;SOR=2.303;VQSLOD=5.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
chr2	203072956	rs34512611	A	G	186.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=-3.190e-01;SOR=0.527;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:108,0,29
chr2	203072980	rs35203945	G	A	185	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=-3.190e-01;SOR=0.527;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:103,0,29
chr2	203079307	rs3769817	T	C	2753.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=27;ExcessHet=3.0103;FS=15.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.086;SOR=2.545;VQSLOD=12.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1067,81,0
chr2	203102912	rs10167674	A	G	605.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=3.258;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:185,18,0
chr2	203130941	rs6756580	G	A	1045.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=6.518;VQSLOD=23.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr2	203139738	rs11397579	A	AC	1183.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.01;SOR=4.680;VQSLOD=6.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:337,27,0
chr2	203152355	rs7572505	G	A	5337.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=105;ExcessHet=1.5490;FS=0.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=-4.380e-01;SOR=0.769;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,57:105:99:1405,0,1153
chr2	203155015	rs11310035	GT	G	3630.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410e-01;DB;DP=83;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.28;ReadPosRankSum=2.94;SOR=0.761;VQSLOD=6.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:49,34:83:99:913,0,1385
chr2	203160786	rs35805055	A	AT	122.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.180;SOR=1.609;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:40:131,0,40
chr2	203168173	rs1054446	C	T	948.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=28;ExcessHet=3.9794;FS=1.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=1.94;SOR=1.426;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:380,0,387
chr2	203378398	rs10714063	CT	C	1693.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.988;SOR=0.606;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,28:58:99:680,0,768
chr2	203378616	rs7575056	C	T	1804.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621e+00;DB;DP=45;ExcessHet=3.9794;FS=3.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-4.440e-01;SOR=0.309;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:635,0,704
chr2	203384776	rs11390605	C	CT,CTT	1499.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.640e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=-7.100e-01;SOR=1.051;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,11,8:23:99:422,125,140,185,0,255
chr2	203395392	rs67365959	CTCT	C	310.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=1.67;SOR=1.179;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,101
chr2	203419859	rs17199235	A	G	147.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=-6.080e-01;SOR=0.941;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:98:156,0,98
chr2	203499720	rs933969	G	A	362.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.91;SOR=0.836;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:191,21,0
chr2	203500651	rs71852817	TG	T	119.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=1.609;VQSLOD=5.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
chr2	203630102	rs373287818	CT	C	89.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-01;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=1.17;ReadPosRankSum=-7.410e-01;SOR=0.670;VQSLOD=5.02;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,7:33:85:85,0,564
chr2	203661779	rs6704822	A	G	3821.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=2.501;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1231,105,0
chr2	203661855	rs140531204	TTGTGTGTGTGTG	T	206.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.78;SOR=3.611;VQSLOD=3.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	203690387	rs1344959	G	A	3197.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=1.732;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:883,87,0
chr2	203693559	rs4675296	C	G	9813.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=1.145;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3061,291,0
chr2	203748544	rs34788166	A	AT	1425.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.40;SOR=2.584;VQSLOD=4.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:366,39,0
chr2	203748594	rs10196719	A	G	1234.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.17;SOR=2.376;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:344,24,0
chr2	203749392	rs3050865	C	CTTT	751.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.71;SOR=5.784;VQSLOD=6.03;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr2	203818575	rs6709618	A	G	834.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.14;SOR=5.994;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:221,15,0
chr2	203880992	rs2351524	T	C	1674.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.920e-01;DB;DP=20;ExcessHet=3.0103;FS=1.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=-6.990e-01;SOR=0.507;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:584,59,0
chr2	203921270	rs4673241	A	G	9726.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.64;SOR=1.516;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2370,248,0
chr2	203964137	rs7574314	T	C	802.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.650e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.73;ReadPosRankSum=0.308;SOR=2.753;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:196,15,0
chr2	203991488	rs6725469	A	G	6516.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=0.753;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2994,282,0
chr2	203991818	rs6715331	T	C	440.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.87;SOR=5.136;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr2	203996635	rs9677190	T	G	2291.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=2.904;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1222,102,0
chr2	203996870	rs6748898	A	G	6775.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=2.427;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1844,158,0
chr2	204001724	rs10932006	G	A	810.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=6.091;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr2	204002809	rs10180815	A	C	1810.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.85;SOR=4.362;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:470,36,0
chr2	204036545	rs5837845	C	CT	706.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670e-01;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-1.350e-01;SOR=0.519;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,13:16:15:260,0,15
chr2	204054882	rs148174619	TACACACACACACACACAC	T,TAC	5917.39	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.43;DB;DP=40;ExcessHet=3.0103;FS=7.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;SOR=3.037;VQSLOD=4.99;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,6,34:40:45:1583,1017,1019,167,0,45
chr2	204062061	rs4675323	A	G	12591.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=0.726;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3263,339,0
chr2	204067268	rs2060388	A	G	888.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.94;SOR=4.712;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr2	204090887	rs2351773	C	G	8077.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.43;SOR=1.022;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2273,216,0
chr2	204111394	rs13015873	T	C	7418.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.95;SOR=3.542;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,46:46:99:1|1:204111394_T_C:2108,141,0:204111394
chr2	204111398	rs10586509	GTTAA	G	7465.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.45;SOR=3.456;VQSLOD=2.67;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,47:47:99:1|1:204111394_T_C:2080,141,0:204111394
chr2	204111443	rs6435176	A	G	10511.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.46;SOR=2.001;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3216,270,0
chr2	204111705	rs6751894	T	C	3023.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.62;SOR=3.716;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:704,63,0
chr2	204116690	rs2043449	C	T	8207.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=2.140;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2444,242,0
chr2	204116887	rs2351771	T	G	5895.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=2.689;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1658,159,0
chr2	204137574	.	CTT	C	67.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.11;ReadPosRankSum=1.83;SOR=0.693;VQSLOD=5.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,3:11:76:76,0,206
chr2	204143126	rs2043444	T	C	425.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=-1.800e-01;SOR=1.371;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr2	204154325	rs7593677	G	A	688.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=5.892;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	204154686	rs10170454	A	G	1346.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=4.680;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:577,42,0
chr2	204156757	rs6435179	G	A	657.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=5.784;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	204157238	rs6727994	A	G	2369.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=8.189;VQSLOD=24.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:549,42,0
chr2	204206977	rs4675333	C	T	8911.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=1.027;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2502,260,0
chr2	204216255	rs35382487	G	GT	425.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=20;ExcessHet=6.9897;FS=5.720;MQ=60.00;MQRankSum=0.00;QD=12.89;ReadPosRankSum=-5.300e-01;SOR=0.166;VQSLOD=4.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,15:20:8:331,0,8
chr2	204216559	rs4675336	G	A	325.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.33;SOR=3.056;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	204240891	rs141056236	TC	T	2351.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=31;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.709;SOR=0.767;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1220,93,0
chr2	204261723	rs3731652	G	C	11877.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.136;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.336;SOR=0.801;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4169,378,0
chr2	204268368	rs10623184	T	TTA	535.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=5.283;VQSLOD=6.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr2	204591408	rs41272649	G	A	1273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DB;DP=92;ExcessHet=3.0103;FS=0.839;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=2.00;SOR=0.523;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1282,0,1274
chr2	204732714	rs231775	A	G	7621.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=0.4576;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.28;SOR=0.934;VQSLOD=4.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3101,276,0
chr2	204732850	rs231776	A	G	9425.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=1.382;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3076,296,0
chr2	204821605	rs11571313	C	T	141.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=-9.920e-01;SOR=1.179;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:150,0,108
chr2	204822294	rs56236018	C	T	101.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.71;SOR=2.833;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr2	204822670	rs5837889	A	AT	1027.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.770;SOR=0.689;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,25:49:99:504,0,482
chr2	204824178	rs112626862	AGT	A	2396.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.060e-01;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.40;ReadPosRankSum=0.223;SOR=0.659;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,21:36:99:632,0,281
chr2	204824283	rs10172036	T	G	7402.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.61;SOR=1.025;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3267,307,0
chr2	204824324	rs10183087	A	C	1593.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=132;ExcessHet=3.0103;FS=0.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.726;SOR=0.585;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,64:132:99:1602,0,1673
chr2	204824652	rs10932035	G	A	90.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-4.140e-01;SOR=0.368;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:99,0,185
chr2	205829991	rs236843	C	T	3791.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=54;ExcessHet=3.9794;FS=1.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=1.24;SOR=0.536;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:733,0,696
chr2	205969220	rs2289025	G	A	7972.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.430e-01;DB;DP=93;ExcessHet=3.0103;FS=1.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.245;SOR=0.617;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2801,279,0
chr2	205978113	rs368750104	CA	C	1662.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.12;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.69;ReadPosRankSum=1.91;SOR=0.638;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:33:1|1:205978113_CA_C:479,33,0:205978113
chr2	205978118	.	GT	G	1625.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.977e+00;DP=12;ExcessHet=3.0103;FS=2.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.17;ReadPosRankSum=2.58;SOR=1.697;VQSLOD=6.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:205978113_CA_C:511,36,0:205978113
chr2	205978347	rs5837953	T	TGATTTGA	3458.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=54;ExcessHet=1.5490;FS=2.952;MQ=60.00;MQRankSum=0.00;QD=29.82;ReadPosRankSum=-2.208e+00;SOR=1.098;VQSLOD=4.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2422,162,0
chr2	205986767	rs1434161	C	T	262.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=-3.660e-01;SOR=1.609;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	205990353	rs2276676	C	T	4709.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.715;DB;DP=111;ExcessHet=1.5490;FS=0.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=-1.784e+00;SOR=0.611;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3468,333,0
chr2	205990677	rs13001141	T	C	185.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=-3.410e-01;SOR=0.892;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	206023893	rs6435271	C	T	278.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=0.674;SOR=2.303;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:223,18,0
chr2	206036918	rs736320	C	T	6254.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.153e+00;DB;DP=76;ExcessHet=3.0103;FS=0.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=-1.279e+00;SOR=0.774;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2507,228,0
chr2	206041366	.	TAA	T,TA	353.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.967;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=1.12;SOR=0.749;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,5:10:86:266,116,102,114,0,86
chr2	206166272	.	A	C	398.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.07;ReadPosRankSum=-2.340e-01;SOR=0.818;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:407,0,392
chr2	206364487	rs11687914	T	C	1746.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=34;ExcessHet=6.9897;FS=3.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=-1.110e-01;SOR=0.259;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,23:34:99:717,0,270
chr2	206364737	rs10197347	T	C	3356.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746e+00;DB;DP=74;ExcessHet=6.9897;FS=0.493;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-7.520e-01;SOR=0.636;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1066,0,1042
chr2	206364791	rs11683289	C	G	1904.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.180e-01;DB;DP=54;ExcessHet=6.9897;FS=2.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-1.910e-01;SOR=0.943;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:641,0,900
chr2	206417747	rs10603994	AAAG	A	638.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.80;SOR=5.549;VQSLOD=6.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	206418032	rs6730102	G	A	8716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=0.730;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2379,210,0
chr2	206480054	rs13387277	C	T	117.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-7.000e-01;SOR=0.527;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:126,0,190
chr2	206481612	rs10572381	TGA	T	640.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=0.313;SOR=1.255;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:103,0,118
chr2	206548279	rs146091617	AGTGTGTGT	A	334.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=59.35;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=0.674;SOR=2.833;VQSLOD=0.565;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:69:78,0,69
chr2	206562036	rs3072627	CTGTG	C,CTG	944.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.76;POSITIVE_TRAIN_SITE;QD=30.48;SOR=4.615;VQSLOD=5.77;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,5,5:10:99:354,144,128,164,0,135
chr2	206562250	rs849558	C	T	7624.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=1.346;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2028,191,0
chr2	206565500	rs3771051	C	T	2275.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450e-01;DB;DP=101;ExcessHet=3.9794;FS=2.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.09;SOR=0.482;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,54:101:99:1391,0,1167
chr2	206580714	rs849542	T	G	1859.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=19;ExcessHet=1.5490;FS=2.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=0.719;SOR=0.254;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:435,0,223
chr2	206581033	rs849541	G	A	7222.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=1.964;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2535,233,0
chr2	206592525	rs849527	A	G	553.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=1.14;SOR=1.931;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:258,0,198
chr2	206592549	rs200956862	G	GA	315.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.13;ReadPosRankSum=0.795;SOR=0.321;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,13:26:99:324,0,317
chr2	206592695	rs849526	T	C	4329.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.970e-01;DB;DP=89;ExcessHet=1.5490;FS=5.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.67;ReadPosRankSum=1.02;SOR=0.978;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,49:89:99:1275,0,1014
chr2	206607700	rs57269940	C	T	376.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=-1.890e-01;SOR=0.892;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:70:70,0,108
chr2	206608039	rs849568	T	C	8200.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.78;ReadPosRankSum=1.14;SOR=0.742;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,52:94:99:1560,0,1004
chr2	206608464	rs151201904	T	TTTTG	441.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.62;ReadPosRankSum=0.967;SOR=1.765;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,204
chr2	206610334	rs76396936	A	T	1409.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.45;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=0.621;SOR=0.570;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,41:68:99:1418,0,869
chr2	206610677	rs79521686	C	T	365.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=28;ExcessHet=3.0103;FS=4.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-1.789e+00;SOR=1.845;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:374,0,417
chr2	206614091	rs13026243	T	G	364.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=0.319;SOR=0.941;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:85,0,29
chr2	206614150	rs12999827	A	G	962.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.10;ReadPosRankSum=0.876;SOR=2.303;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:89:241,0,89
chr2	206614160	rs849560	A	G	1323.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.690e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=-8.720e-01;SOR=2.093;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:466,36,0
chr2	206614646	rs10932123	T	G	3495.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=46;ExcessHet=3.9794;FS=0.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=1.14;SOR=0.877;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:651,0,735
chr2	206630073	rs112194118	A	AAC	2274.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DB;DP=47;ExcessHet=6.9897;FS=1.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-2.700e-01;SOR=0.891;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,16:47:99:428,0,969
chr2	206656841	rs148398346	G	A	889.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.719;SOR=0.646;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,34:73:99:898,0,966
chr2	206874339	rs817991	G	A	3559.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=70;ExcessHet=1.5490;FS=0.000;MQ=59.94;MQRankSum=-1.000e+00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=0.553;SOR=0.748;VQSLOD=2.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,34:70:99:959,0,863
chr2	206884595	rs11366043	AT	A	1839.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220e-01;DB;DP=25;ExcessHet=1.5490;FS=1.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=0.520;SOR=1.095;VQSLOD=7.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,11:25:99:255,0,331
chr2	206884813	rs34519729	G	GT	44.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.12;SOR=0.693;VQSLOD=4.05;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr2	206911191	rs34828561	C	CA	3281.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.09;DB;DP=51;ExcessHet=3.0103;FS=5.003;MQ=60.00;MQRankSum=0.00;QD=26.47;ReadPosRankSum=-8.800e-02;SOR=2.041;VQSLOD=5.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,47:51:41:1206,41,0
chr2	206911228	rs2909111	G	A	3042.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.180e-01;DB;DP=77;ExcessHet=1.5490;FS=1.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=-7.100e-02;SOR=0.910;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,37:77:99:846,0,1005
chr2	206921451	rs818009	G	A	14948.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=1.087;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4233,428,0
chr2	206927850	rs17286674	G	A	2098.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.326;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=1.27;SOR=0.612;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:562,0,811
chr2	206992371	rs4147726	G	A	170.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=1.69;SOR=0.368;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:93:93,0,198
chr2	207003438	rs4147729	TA	T	591.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=-6.790e-01;SOR=1.092;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:68:243,0,68
chr2	207006522	rs200961205	CA	C	38.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.63;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=5.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:12:47,0,12
chr2	207006825	rs4147718	C	A	865.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421e+00;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-9.540e-01;SOR=0.671;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:524,0,528
chr2	207008675	rs35409448	C	CT	1046.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=1.45;SOR=0.681;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,14:34:99:462,0,669
chr2	207008763	rs1127566	C	A	1343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=1.06;SOR=0.714;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,21:56:99:576,0,934
chr2	207014747	rs143126435	T	TTCTATCTATCTATCTA	187.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.74;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:81:81,0,166
chr2	207023508	rs4147711	T	C	351.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.546;SOR=1.751;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:232,0,129
chr2	207023595	rs4147709	C	A	1889.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e+00;DB;DP=52;ExcessHet=3.9794;FS=0.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.00;SOR=0.789;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,25:52:99:0|1:207023595_C_A:1013,0,1424:207023595
chr2	207023620	rs4147708	A	G	2028.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DB;DP=61;ExcessHet=3.9794;FS=0.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=1.37;SOR=0.601;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,32:61:99:0|1:207023595_C_A:1119,0,1452:207023595
chr2	207024886	rs113729178	G	GC	7212.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.24;SOR=2.082;VQSLOD=4.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2363,216,0
chr2	207025444	rs11689362	T	C	3727.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DB;DP=132;ExcessHet=3.9794;FS=3.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.820;SOR=0.507;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,80:132:99:2070,0,1383
chr2	207026471	rs3755229	C	T	580.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.9794;FS=4.973;MQ=59.24;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=0.842;SOR=3.086;VQSLOD=-1.375e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,189
chr2	207026490	rs142413994	C	CT	665.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.48;MQRankSum=0.00;QD=20.79;ReadPosRankSum=0.937;SOR=1.112;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:74:74,0,221
chr2	207026492	rs148791027	C	A	869.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-02;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.69;MQRankSum=0.00;QD=33.46;ReadPosRankSum=0.965;SOR=1.287;VQSLOD=3.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:11:66:226,0,66
chr2	207027407	rs35430253	C	CT	3244.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=83;ExcessHet=3.9794;FS=1.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-7.150e-01;SOR=0.579;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,37:83:99:1242,0,1611
chr2	207040777	rs112540540	T	C	246.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=1.52;SOR=1.445;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:255,0,123
chr2	207041053	rs3732083	T	C	3104.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=136;ExcessHet=3.9794;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=0.970;SOR=0.654;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,65:136:99:1639,0,1820
chr2	207169731	rs10932150	G	A	3655.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595e+00;DB;DP=75;ExcessHet=1.5490;FS=2.328;MQ=59.99;MQRankSum=-1.071e+00;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=0.767;SOR=0.668;VQSLOD=2.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,34:75:99:800,0,1118
chr2	207171102	rs78386861	G	A	1938.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.15;DB;DP=66;ExcessHet=3.9794;FS=1.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.178;SOR=0.559;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:843,0,880
chr2	207172627	rs7582864	A	G	4498.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287e+00;DB;DP=99;ExcessHet=1.5490;FS=2.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=-1.069e+00;SOR=0.495;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,54:99:99:1405,0,1226
chr2	207174316	rs3732084	T	C	1919.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.30;ReadPosRankSum=-1.180e-01;SOR=0.657;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:312,0,483
chr2	207309963	.	TG	T	182.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DP=28;ExcessHet=3.0103;FS=4.301;MQ=60.00;MQRankSum=0.00;QD=6.51;ReadPosRankSum=0.763;SOR=1.828;VQSLOD=4.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,8:28:99:191,0,587
chr2	207310189	rs112012170	T	G	372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=50;ExcessHet=3.0103;FS=1.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.45;ReadPosRankSum=-1.633e+00;SOR=0.490;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,16:50:99:381,0,834
chr2	207346238	rs12694056	C	A	70.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.86;SOR=2.303;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	207395345	rs5838028	GA	G	254.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.93;ReadPosRankSum=0.882;SOR=0.437;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:12:36:36,0,167
chr2	207395393	.	C	CT	565.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e-01;DP=20;ExcessHet=1.5490;FS=0.000;MQ=59.91;MQRankSum=1.21;QD=12.30;ReadPosRankSum=1.57;SOR=0.846;VQSLOD=0.384;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:94:94,0,111
chr2	207452151	rs3832131	GT	G	2207.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DB;DP=25;ExcessHet=3.0103;FS=1.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=-6.120e-01;SOR=0.951;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,8:25:99:165,0,418
chr2	207457265	rs13420297	T	C	2263.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900e-01;DB;DP=40;ExcessHet=6.9897;FS=1.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.663;SOR=0.530;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:661,0,423
chr2	207459467	rs3732079	C	T	2419.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=59;ExcessHet=6.9897;FS=0.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-5.690e-01;SOR=0.788;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,28:59:99:677,0,762
chr2	207472683	rs78458117	C	CTA	11830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055e+00;DB;DP=116;ExcessHet=3.0103;FS=3.106;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=0.569;SOR=0.545;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,52:116:99:1988,0,2687
chr2	207508741	rs4673360	C	T	943.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=-3.660e-01;SOR=4.977;VQSLOD=18.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:249,18,0
chr2	207527840	rs2115591	G	T	11145.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175e+00;DB;DP=156;ExcessHet=3.9794;FS=4.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=-3.790e-01;SOR=0.797;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,84:156:99:2160,0,2054
chr2	207530888	rs72958655	G	T	335.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=8;ExcessHet=6.9897;FS=2.876;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.842;SOR=1.659;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:147,0,134
chr2	207557790	rs72958692	T	A	171.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-7.120e-01;SOR=1.609;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:64:180,0,64
chr2	207564546	rs116493063	C	A	2030.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e+00;DB;DP=163;ExcessHet=3.0103;FS=5.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.299;SOR=0.556;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,90:163:99:2039,0,1753
chr2	207569715	rs16838626	T	C	794.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=0.700;SOR=0.527;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,27:47:99:803,0,520
chr2	207569803	rs16838630	A	C	43.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.41;ReadPosRankSum=0.619;SOR=0.693;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:52:52,0,190
chr2	207570705	rs16838632	A	G	233.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.881;SOR=0.941;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:242,0,258
chr2	207572133	rs67248530	A	C	2668.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.040e-01;DB;DP=110;ExcessHet=3.9794;FS=3.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.850;SOR=0.931;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,60:110:99:1494,0,1350
chr2	207572341	rs16838641	T	G	155.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.996;SOR=1.179;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:164,0,260
chr2	207572396	rs10490747	C	A	65.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:74,0,72
chr2	207574944	rs10490749	G	A	66.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:75,0,35
chr2	207583215	rs1001110	C	T	469.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=-1.085e+00;SOR=1.402;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:269,21,0
chr2	207610454	rs140066038	CT	C	903.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=23;ExcessHet=6.9897;FS=8.215;MQ=59.76;MQRankSum=0.00;QD=12.73;ReadPosRankSum=2.03;SOR=1.810;VQSLOD=3.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:23:87:171,0,87
chr2	207613980	rs13427620	G	A	577.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.19;MQRankSum=1.62;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=-5.100e-01;SOR=0.495;VQSLOD=1.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,11:16:99:340,0,121
chr2	207621759	rs1990849	A	G	5712.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.41;SOR=1.953;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1472,138,0
chr2	207636518	rs12620432	C	T	176.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.705;SOR=0.223;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:185,0,176
chr2	207653455	rs66976323	CA	C	157.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.93;ReadPosRankSum=0.191;SOR=0.324;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:91:96,0,91
chr2	207820276	rs13420911	G	A	8678.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=93;ExcessHet=3.0103;FS=8.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=0.495;SOR=0.386;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2750,276,0
chr2	207824384	rs11903403	T	G	5161.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.68;DB;DP=59;ExcessHet=3.0103;FS=9.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=0.775;SOR=0.264;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1769,176,0
chr2	207824548	rs1453168	G	A	4235.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.59;DB;DP=42;ExcessHet=3.0103;FS=1.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=0.578;SOR=0.833;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1494,126,0
chr2	207824650	rs1453169	A	G	1560.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.080;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.22;ReadPosRankSum=-9.860e-01;SOR=2.494;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:498,36,0
chr2	207825656	rs13397039	A	T	5990.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.100e-01;DB;DP=69;ExcessHet=3.0103;FS=0.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=-3.240e-01;SOR=0.625;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2244,207,0
chr2	207833760	rs73053220	A	T	971.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.486e+00;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=-3.950e-01;SOR=0.874;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:312,0,358
chr2	207833848	rs7582092	A	G	5808.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.236e+00;DB;DP=82;ExcessHet=3.0103;FS=2.848;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=-5.600e-01;SOR=1.101;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2429,244,0
chr2	207908875	rs1468982	T	G	117.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687e+00;DB;DP=18;ExcessHet=3.0103;FS=2.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.51;ReadPosRankSum=-5.430e-01;SOR=1.751;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,5:18:99:126,0,436
chr2	207911037	.	AAGAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGG	A	73.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=52.92;MQRankSum=-9.670e-01;QD=24.52;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=0.377;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:32:82,0,32
chr2	207911114	.	GGAGGAGAAA	G	133.80	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=54.63;QD=31.59;SOR=2.303;VQSLOD=4.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:39:561,39,0
chr2	207911256	rs144515507	T	C	371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;DB;DP=57;ExcessHet=3.0103;FS=2.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.51;ReadPosRankSum=2.28;SOR=0.806;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,18:57:99:380,0,995
chr2	207911421	rs7587226	C	T	1239.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.17;SOR=4.548;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr2	207945785	rs1128555	A	ATGTG	2115.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=22.30;SOR=2.348;VQSLOD=2.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:765,51,0
chr2	207946141	rs2287507	A	G	7271.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=83;ExcessHet=3.0103;FS=1.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=-2.430e-01;SOR=0.831;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,81:83:99:2533,214,0
chr2	207946164	rs2287506	T	C	6174.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.17;DB;DP=66;ExcessHet=3.0103;FS=3.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.57;ReadPosRankSum=-8.560e-01;SOR=1.048;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,64:66:99:2059,148,0
chr2	207953406	rs2302870	T	G	1284.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.102e+00;DB;DP=75;ExcessHet=3.0103;FS=1.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=0.833;SOR=0.382;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,42:75:99:1293,0,1041
chr2	207953530	rs11895945	C	T	322.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=2.36;SOR=0.610;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,72
chr2	207974818	rs2244923	C	T	5524.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=1.238;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1661,162,0
chr2	207974875	rs2244918	A	G	466.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=25;ExcessHet=3.0103;FS=2.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=1.62;SOR=1.609;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:475,0,227
chr2	207988613	rs2700166	C	T	5288.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.53;SOR=1.146;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1370,108,0
chr2	207989230	rs763865	G	T	3074.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=1.48;SOR=0.663;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:448,0,638
chr2	207998800	rs2284934	C	T	6446.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=80;ExcessHet=3.0103;FS=2.057;MQ=59.99;MQRankSum=0.907;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-1.257e+00;SOR=0.661;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,35:80:99:868,0,1095
chr2	207998878	rs10681871	A	ATTTT,AT	3139.53	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.079;DB;DP=37;ExcessHet=3.0103;FS=5.316;MQ=59.86;MQRankSum=1.24;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=1.00;SOR=0.221;VQSLOD=0.258;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:7,10,14:37:99:636,193,659,276,0,296
chr2	207999021	rs2284933	G	C	3106.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=36;ExcessHet=3.9794;FS=3.277;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=1.28;SOR=1.003;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:537,0,459
chr2	208031167	rs6717413	G	A	4668.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=92;ExcessHet=3.9794;FS=1.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=0.304;SOR=0.609;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2857,275,0
chr2	208031695	rs67974250	CCTT	C	344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.59;ReadPosRankSum=0.192;SOR=1.329;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,9:14:99:353,0,183
chr2	208031724	rs2269070	G	C	637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.56;ReadPosRankSum=0.852;SOR=1.255;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:646,0,328
chr2	208031796	rs2037893	C	G	5070.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.934e+00;DB;DP=90;ExcessHet=3.9794;FS=2.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.23;SOR=0.947;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2868,270,0
chr2	208031992	rs1269424	T	A	14582.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.11;ReadPosRankSum=0.929;SOR=0.326;VQSLOD=6.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5018,518,0
chr2	208440307	rs185304561	A	G	115.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:124,0,61
chr2	208442095	rs2709387	G	A	649.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.74;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=1.20;SOR=0.904;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:261,0,314
chr2	208446367	rs2551926	T	G	691.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.13;SOR=5.784;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr2	208447642	rs12478868	A	T	495.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.552;DB;DP=6;ExcessHet=3.9794;FS=1.043;MQ=60.00;MQRankSum=0.00;QD=8.25;ReadPosRankSum=2.26;SOR=0.909;VQSLOD=5.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:172,18,0
chr2	208477852	rs2551949	G	A	5997.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527e+00;DB;DP=82;ExcessHet=3.9794;FS=8.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=1.08;SOR=0.347;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,43:82:99:978,0,1038
chr2	208477956	rs2709416	C	T	6703.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=70;ExcessHet=3.9794;FS=0.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=2.25;SOR=0.703;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,31:70:99:830,0,1024
chr2	208485737	rs2709415	T	C	2523.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=1.788;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:896,90,0
chr2	208489101	rs4234080	C	A	669.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706e+00;DB;DP=51;ExcessHet=3.0103;FS=1.082;MQ=59.96;MQRankSum=1.10;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.066;SOR=0.481;VQSLOD=2.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,27:51:99:678,0,647
chr2	208576731	rs61747448	C	T	573.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.070e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-1.751e+00;SOR=0.693;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:582,0,361
chr2	208591702	rs2551957	A	G	349.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=22;ExcessHet=3.0103;FS=3.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-3.610e-01;SOR=2.636;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:358,0,334
chr2	208601840	rs7564254	C	T	835.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.65;MQRankSum=-7.090e-01;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.250;SOR=0.394;VQSLOD=0.547;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,13:17:99:427,0,115
chr2	208602105	rs62189195	G	A	517.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-1.663e+00;SOR=0.569;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:526,0,581
chr2	208605594	rs2663879	T	C	52.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,141
chr2	208611695	rs62189196	G	A	112.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.62;ReadPosRankSum=-8.250e-01;SOR=0.551;VQSLOD=20.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,6:31:99:121,0,672
chr2	208615524	rs62189213	T	G	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=19;ExcessHet=3.0103;FS=2.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.212;SOR=1.751;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:216,0,346
chr2	208616046	rs4673376	A	C	524.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=0.328;SOR=0.223;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:112,0,143
chr2	208626207	rs13388544	A	G	161.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=-4.220e-01;SOR=0.193;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:170,0,445
chr2	208633413	rs4675711	T	C	16995.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=1.796;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:5214,420,0
chr2	208693261	rs720632	C	G	3501.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=1.502;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2006,174,0
chr2	208693307	rs720631	T	C	2290.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.38;SOR=1.810;VQSLOD=5.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1169,111,0
chr2	208717194	rs10180826	G	T	147.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=3.258;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	208717440	rs10932211	A	G	2155.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.53;SOR=0.898;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1026,102,0
chr2	208726241	rs7560755	C	T	74.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=2.303;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	208773552	rs2718651	C	A	110.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=2.833;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr2	208796078	rs1871671	C	T	368.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=-1.282e+00;SOR=3.442;VQSLOD=18.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr2	208811097	rs10932215	C	T	3387.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;DB;DP=53;ExcessHet=3.9794;FS=2.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=0.368;SOR=0.936;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1723,159,0
chr2	208811284	rs10932216	C	T	2181.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;DB;DP=90;ExcessHet=3.9794;FS=1.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.430e-01;SOR=0.830;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,51:90:99:1192,0,788
chr2	208841133	rs4021953	A	G	244.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.97;SOR=4.174;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr2	208841964	rs4441448	A	G	14028.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.01;SOR=0.766;VQSLOD=19.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4058,369,0
chr2	208842394	rs2044971	A	G	2306.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.29;SOR=6.770;VQSLOD=24.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:697,51,0
chr2	208986385	rs2305429	A	G	9901.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=1.634;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2900,278,0
chr2	208986637	rs2305430	T	C	9418.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=1.601;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2961,279,0
chr2	208989037	rs2242074	A	G	3718.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.880e-01;DB;DP=81;ExcessHet=6.9897;FS=0.922;MQ=58.90;MQRankSum=-2.960e+00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-3.420e-01;SOR=0.630;VQSLOD=0.666;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1112,0,944
chr2	208994697	rs2242071	C	T	653.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.39;ReadPosRankSum=-1.981e+00;SOR=3.611;VQSLOD=16.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	209007559	rs796287	T	G	3188.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.73;DB;DP=59;ExcessHet=3.9794;FS=3.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-1.451e+00;SOR=0.458;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1807,177,0
chr2	209007786	rs1124651	A	G	160.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr2	209010558	rs2854723	A	G	1678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DB;DP=70;ExcessHet=3.9794;FS=0.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.284;SOR=0.628;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,31:70:99:731,0,907
chr2	209010891	rs2289917	G	A	2501.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DB;DP=113;ExcessHet=3.9794;FS=1.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.940;SOR=0.581;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,64:113:99:1759,0,1349
chr2	209025490	rs201789574	T	C	864.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.989e+00;DB;DP=64;ExcessHet=3.0103;FS=1.077;MQ=60.00;MQRankSum=0.00;QD=13.50;ReadPosRankSum=0.634;SOR=0.516;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,35:64:99:873,0,779
chr2	209030330	rs34111482	G	GT	847.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.670;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=1.61;SOR=1.201;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,11:12:31:292,31,0
chr2	209030572	rs6721025	A	G	3978.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=0.354;SOR=0.791;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1386,123,0
chr2	209032933	rs12694099	A	T	713.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.98;ReadPosRankSum=0.842;SOR=3.258;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr2	209033138	rs7589065	C	T	1543.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.670e+00;DB;DP=23;ExcessHet=3.0103;FS=2.653;MQ=60.00;MQRankSum=0.00;QD=30.27;ReadPosRankSum=-8.660e-01;SOR=0.211;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:748,69,0
chr2	209033173	rs7562540	A	G	1412.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=58.69;POSITIVE_TRAIN_SITE;QD=33.64;SOR=2.093;VQSLOD=3.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:553,57,0
chr2	209035485	rs6435420	T	G	3199.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=5.367;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1007,72,0
chr2	209035658	rs6748431	C	T	13248.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=1.014;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3860,363,0
chr2	209035849	rs4292037	A	C	5130.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=3.176;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1541,126,0
chr2	209036457	rs149518601	G	GCCACTCCAT	1548.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.00;SOR=3.841;VQSLOD=5.60;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:24:347,24,0
chr2	209036605	rs10932244	T	C	5277.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.62;SOR=1.478;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1742,168,0
chr2	209036712	rs10804166	T	C	9790.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.022;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2665,259,0
chr2	209036778	rs6435421	A	G	11025.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.68;SOR=0.776;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3235,306,0
chr2	209037005	rs7564942	T	C	2236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.25;SOR=5.421;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:587,51,0
chr2	209046162	rs6435425	G	A	3024.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.66;SOR=5.166;VQSLOD=19.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:209046162_G_A:880,60,0:209046162
chr2	209046164	rs6435426	A	G	3024.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=5.549;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:60:1|1:209046162_G_A:880,60,0:209046162
chr2	209049840	rs10804167	C	T	3652.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.96;SOR=1.670;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:931,95,0
chr2	209101905	rs57383668	GA	G	7425.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=-5.600e-02;SOR=0.708;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2063,216,0
chr2	209102117	rs75634689	A	ACT	1561.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.62;SOR=7.223;VQSLOD=7.52;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:324,24,0
chr2	209110270	rs34363027	C	CT	715.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.96;QD=26.51;SOR=1.528;VQSLOD=3.77;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,7:7:20:120,20,0
chr2	209120640	rs1446325	C	T	2477.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=1.121;VQSLOD=18.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:911,87,0
chr2	209120967	rs10207062	T	G	99.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=0.674;SOR=1.270;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,1:2:2:41,2,0
chr2	209138121	rs4673386	G	A	132.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.42;SOR=1.981;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr2	209138946	rs6705163	C	T	3628.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=2.977;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:947,84,0
chr2	209163556	rs7569723	C	T	6954.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=2.363;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1791,153,0
chr2	209165487	rs6755550	A	T	627.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=5.549;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:252,18,0
chr2	209168853	rs893256	C	T	5085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.39;SOR=1.276;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1218,120,0
chr2	209176807	rs12624141	T	G	1211.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.47;ReadPosRankSum=0.765;SOR=3.981;VQSLOD=15.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:339,27,0
chr2	209180234	rs55976676	C	CTTTG	5268.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=1.609;VQSLOD=5.08;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2103,141,0
chr2	209184844	rs934712	A	G	1224.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.98;SOR=3.545;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:357,30,0
chr2	209184980	rs10932258	G	A	3271.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.02;SOR=0.956;VQSLOD=19.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:877,87,0
chr2	209184999	rs10932259	C	T	3359.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=0.712;VQSLOD=18.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:848,78,0
chr2	209188678	rs201183537	GTTGT	G	2458.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=55.02;POSITIVE_TRAIN_SITE;QD=28.91;SOR=8.051;VQSLOD=6.64;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:537,36,0
chr2	209189912	rs893255	A	G	4376.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.36;SOR=0.808;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1331,102,0
chr2	209190330	rs2363468	T	C	7656.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.88;SOR=0.992;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2095,182,0
chr2	209190519	rs893254	A	T	16751.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=0.768;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,136:136:99:1|1:209190519_A_T:5752,409,0:209190519
chr2	209190528	rs893253	C	G	15906.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=0.845;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,118:118:99:1|1:209190519_A_T:5409,367,0:209190519
chr2	209191082	rs1529979	C	A	5759.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=1.152;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1644,152,0
chr2	209191099	rs1529978	T	C	5565.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.99;SOR=1.159;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1545,144,0
chr2	209193185	rs976247	C	A	610.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=5.549;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr2	209194696	rs1437414	G	C	5561.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.12;SOR=1.287;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1316,114,0
chr2	209195099	rs1866045	G	A	1623.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.03;SOR=4.514;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr2	209195133	rs12694109	T	C	2737.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.57;SOR=3.912;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:418,33,0
chr2	209195491	rs112938452	G	GAGA	1201.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.44;POSITIVE_TRAIN_SITE;QD=25.14;SOR=6.666;VQSLOD=5.54;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr2	209199945	rs2363469	A	G	4015.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=3.788;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1140,84,0
chr2	209200394	rs6718402	A	C	807.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=4.615;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr2	209201054	rs6744236	T	C	925.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=4.407;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:156,15,0
chr2	209201739	rs7596571	T	C	1671.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.79;POSITIVE_TRAIN_SITE;QD=32.15;SOR=3.528;VQSLOD=4.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:377,30,0
chr2	209203122	rs4675756	C	G	1982.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=6.358;VQSLOD=23.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:444,33,0
chr2	209204714	rs2289171	G	A	1135.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-6.030e-01;SOR=0.671;VQSLOD=6.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:406,0,237
chr2	209207518	rs35986928	C	CT	219.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.51;MQRankSum=0.00;QD=11.55;ReadPosRankSum=-8.120e-01;SOR=2.419;VQSLOD=4.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:3:116,0,3
chr2	209209827	rs2304544	G	A	5776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=1.345;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1612,162,0
chr2	209209997	rs2043718	C	T	2499.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=2.804;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:918,83,0
chr2	209212707	rs2304545	G	A	8172.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.43;SOR=0.823;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2765,266,0
chr2	209214574	rs1561240	G	A	985.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=6.518;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:312,24,0
chr2	209214770	rs2118297	A	G	4677.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.18;SOR=0.759;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1146,114,0
chr2	209215448	rs994696	A	G	4985.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=2.337;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1568,141,0
chr2	209215586	rs994697	A	G	10827.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=0.772;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3747,359,0
chr2	209219049	rs6435452	T	A	1345.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.53;SOR=1.085;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:388,30,0
chr2	209219190	rs6435453	A	G	8067.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.857;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.52;ReadPosRankSum=-8.370e-01;SOR=1.991;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,57:58:99:2142,140,0
chr2	209220157	rs10208191	G	T	1366.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.67;SOR=5.670;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:373,27,0
chr2	209220238	rs10208295	G	C	460.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.49;SOR=5.283;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
chr2	209224874	rs11357589	CA	C	4853.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=1.503;VQSLOD=6.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1684,135,0
chr2	209293168	rs962595	C	T	2876.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=1.609;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:879,83,0
chr2	209315573	rs1370371	G	A	3554.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;DB;DP=57;ExcessHet=3.9794;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.065;SOR=0.647;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,24:57:99:564,0,903
chr2	209345666	rs1377907	T	G	624.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.70;ReadPosRankSum=-8.420e-01;SOR=3.500;VQSLOD=17.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr2	209345944	.	CTT	C,CT	837.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.539;DP=19;ExcessHet=3.0103;FS=6.432;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.50;ReadPosRankSum=0.289;SOR=2.047;VQSLOD=6.07;culprit=FS	GT:AD:DP:GQ:PL	1/2:3,5,11:19:52:317,171,265,52,0,64
chr2	209346020	rs61511423	T	TGCAACCTC	1225.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=58.41;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=-6.740e-01;SOR=1.675;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:495,33,0
chr2	209353558	rs6754577	C	T	491.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=-3.660e-01;SOR=0.776;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr2	209353607	rs6726003	A	G	1273.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=12;ExcessHet=3.0103;FS=7.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=0.725;SOR=2.891;VQSLOD=18.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:496,36,0
chr2	209353656	rs11335842	GT	G	2438.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.240e-01;DB;DP=31;ExcessHet=3.0103;FS=5.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=-6.570e-01;SOR=1.472;VQSLOD=6.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:889,93,0
chr2	209358027	rs3820900	C	T	8824.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.101e+00;DB;DP=103;ExcessHet=3.0103;FS=1.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-2.380e-01;SOR=0.772;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3184,309,0
chr2	210517785	rs2254169	C	T	2896.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.80;SOR=4.643;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:825,66,0
chr2	210555776	rs3768812	C	T	1576.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.876e+00;DB;DP=17;ExcessHet=3.9794;FS=6.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=0.447;SOR=2.437;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:633,51,0
chr2	210568837	rs115671969	A	G	52.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,146
chr2	210594540	rs4673486	A	G	8197.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=1.071;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2217,209,0
chr2	210594717	rs11389149	C	CT	3805.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=1.441;VQSLOD=6.03;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1143,111,0
chr2	210594768	rs7594601	T	C	4431.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=1.412;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1072,84,0
chr2	210642473	rs10932308	A	T	555.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=10;ExcessHet=3.9794;FS=2.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=-1.350e-01;SOR=1.609;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
chr2	210659434	rs7603924	A	G	929.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=1.37;SOR=0.711;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:471,48,0
chr2	210678691	rs2159745	T	G	2766.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.87;SOR=3.321;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1016,87,0
chr2	210680330	rs56353405	G	A	135.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.819;SOR=0.527;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:144,0,147
chr2	210742994	.	G	A	309.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.89;ReadPosRankSum=0.435;SOR=0.904;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:318,0,365
chr2	210745681	rs2370838	C	A	7372.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=1.475;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2553,240,0
chr2	210786137	rs9288415	G	A	1644.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.33;SOR=3.258;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:576,51,0
chr2	210843383	rs2075117	G	A	10196.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=1.058;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,168:168:99:5248,502,0
chr2	210846714	rs2723221	A	G	579.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=5.549;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:73,9,0
chr2	210846867	rs2723222	A	G	2000.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DB;DP=49;ExcessHet=6.9897;FS=1.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.139;SOR=0.845;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,19:49:99:392,0,757
chr2	210849283	rs10804178	T	C	1031.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=0.034;SOR=0.304;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:113,0,249
chr2	210856658	rs7589926	G	A	1950.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=27;ExcessHet=6.9897;FS=7.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-7.880e-01;SOR=0.267;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:361,0,344
chr2	210874246	rs3738934	T	C	2597.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=43;ExcessHet=6.9897;FS=11.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=-1.136e+00;SOR=1.720;VQSLOD=16.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:677,0,454
chr2	210880893	rs7570090	C	T	1377.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=45;ExcessHet=6.9897;FS=1.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-1.130e+00;SOR=0.883;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,18:45:99:449,0,667
chr2	210882171	rs2075116	A	T	1498.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=46;ExcessHet=6.9897;FS=0.803;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.430;SOR=0.562;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:716,0,604
chr2	210882456	rs2243769	G	T	1895.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.71;POSITIVE_TRAIN_SITE;QD=31.84;SOR=5.136;VQSLOD=6.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:718,60,0
chr2	210882585	rs2215825	C	T	157.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=6;ExcessHet=3.9794;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=1.50;SOR=1.206;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,150
chr2	210882677	rs2723213	C	T	1866.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=2.540;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:647,48,0
chr2	210889759	rs6435550	A	G	1092.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=21;ExcessHet=6.9897;FS=2.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=0.111;SOR=1.212;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:156,0,421
chr2	211053947	rs11403691	T	TA	333.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.79;SOR=5.136;VQSLOD=6.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr2	211060050	rs2286963	T	G	3127.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=6.25;DB;DP=48;ExcessHet=3.9794;FS=3.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=1.67;SOR=1.068;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1530,144,0
chr2	211069438	rs263677	G	A	6218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=1.698;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1904,183,0
chr2	211074909	rs3764913	T	C	4391.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=58;ExcessHet=3.9794;FS=1.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=1.75;SOR=0.821;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1756,174,0
chr2	211163063	rs150329321	TAC	T	5426.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.161;DB;DP=72;ExcessHet=3.0103;FS=1.702;MQ=59.93;MQRankSum=0.00;QD=29.49;ReadPosRankSum=-1.690e-01;SOR=0.374;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,62:72:99:1641,125,0
chr2	211299869	rs2370956	G	A	157.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.981;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr2	211305658	rs2287433	G	A	399.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.27;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr2	211306295	rs4673526	T	C	333.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.51;ReadPosRankSum=-9.670e-01;SOR=3.056;VQSLOD=-1.979e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	211319824	rs2287432	T	C	4660.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=63;ExcessHet=3.0103;FS=3.252;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=-1.980e-01;SOR=0.940;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1922,189,0
chr2	211320041	rs10691255	G	GA,GAA	2480.52	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.86;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.936;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,5,14:23:58:683,418,351,119,0,58
chr2	211341156	rs2287418	C	G	2910.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.537e+00;DB;DP=36;ExcessHet=3.0103;FS=1.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.11;ReadPosRankSum=-3.960e-01;SOR=0.416;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1217,108,0
chr2	211341204	rs56033100	G	GC	1281.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.39;SOR=3.737;VQSLOD=6.19;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:406,33,0
chr2	211342138	rs3755182	T	G	467.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.16;ReadPosRankSum=0.842;SOR=4.047;VQSLOD=14.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:139,12,0
chr2	211342502	rs17552879	G	A	5583.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.215e+00;DB;DP=59;ExcessHet=3.0103;FS=0.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=1.95;SOR=0.819;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1944,177,0
chr2	211444533	.	G	GGT	923.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.090e-01;DP=78;ExcessHet=6.9897;FS=0.554;MQ=59.95;MQRankSum=0.00;QD=3.75;ReadPosRankSum=-1.011e+00;SOR=0.624;VQSLOD=5.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,29:78:99:762,0,1239
chr2	211452598	rs149496892	TAC	T	1081.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.370e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.47;ReadPosRankSum=-1.358e+00;SOR=1.670;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:630,42,0
chr2	211456637	rs1047883	A	G	3907.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.128e+00;DB;DP=53;ExcessHet=1.5490;FS=1.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=0.336;SOR=0.679;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,53:53:99:1|1:211456637_A_G:2365,160,0:211456637
chr2	211456639	rs2229589	C	T	3907.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.020e-01;DB;DP=52;ExcessHet=1.5490;FS=1.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.330;SOR=0.607;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:211456637_A_G:2365,160,0:211456637
chr2	211465113	rs9288418	G	A	350.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=0.307;SOR=1.244;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr2	211466829	rs4420657	A	T	4083.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.93;SOR=1.342;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4100,372,0
chr2	211470196	rs17774535	T	C	116.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.23;SOR=2.833;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr2	211481257	rs2287599	C	G	5529.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=130;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=1.10;SOR=0.666;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3876,388,0
chr2	211513118	rs4673540	C	T	4189.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=2.978;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1237,99,0
chr2	211514995	rs34449727	G	T	2776.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.051e+00;DB;DP=59;ExcessHet=1.5490;FS=4.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.34;ReadPosRankSum=0.348;SOR=0.348;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1953,177,0
chr2	211521227	rs200838660	CT	C	1418.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.299e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=0.124;SOR=0.340;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,11:14:18:286,18,0
chr2	211523163	rs2287598	A	G	585.34	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=0.542;SOR=2.531;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:17:191,17,0
chr2	211523457	rs6435580	C	T	4187.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=97;ExcessHet=1.5490;FS=3.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=-1.194e+00;SOR=0.468;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2851,241,0
chr2	211527827	rs5838215	GT	G	6446.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.500e-02;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=-2.900e-02;SOR=0.636;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,71:71:99:1991,213,0
chr2	211533070	rs10932347	A	G	11874.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=0.910;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3807,356,0
chr2	212252809	rs934607	G	A	3132.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=39;ExcessHet=3.9794;FS=2.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.67;ReadPosRankSum=0.662;SOR=1.029;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:620,0,465
chr2	212285496	.	A	G	61.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.34;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,70
chr2	212286934	rs3791709	A	T	1280.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=-3.100e-01;SOR=0.933;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:247,0,231
chr2	212295468	rs112285178	GTA	G	153.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.77;ReadPosRankSum=0.524;SOR=1.329;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:212295468_GTA_G:45,3,0:212295468
chr2	212295491	rs66513032	TG	T	196.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.05;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:212295468_GTA_G:90,6,0:212295468
chr2	212295498	rs149101807	T	TC	196.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.06;ReadPosRankSum=-1.036e+00;SOR=1.609;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:212295468_GTA_G:90,6,0:212295468
chr2	212295590	rs141267844	G	GT	379.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113e+00;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=0.778;SOR=0.719;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:184,0,262
chr2	212295875	rs6710946	C	T	3073.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.70;SOR=3.258;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:937,78,0
chr2	212488870	rs3215298	G	GC	2017.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.095;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-1.239e+00;SOR=3.219;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:433,33,0
chr2	212543924	rs4673628	A	G	1346.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.370e+00;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-5.070e-01;SOR=0.652;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:903,84,0
chr2	212544024	rs10169970	G	A	241.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.447;SOR=1.426;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr2	212569828	rs9288438	C	T	786.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.53;SOR=6.091;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:444,33,0
chr2	212569879	rs10221746	T	C	1102.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.230e-01;DB;DP=17;ExcessHet=1.5490;FS=3.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.079;SOR=1.609;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:609,51,0
chr2	212569924	rs10221615	G	A	997.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=29;ExcessHet=3.9794;FS=6.747;MQ=60.00;MQRankSum=0.00;QD=14.04;ReadPosRankSum=0.218;SOR=0.250;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:241,0,450
chr2	212569983	rs6723705	G	A	3655.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=0.888;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1514,150,0
chr2	212589986	rs35778743	T	C	1726.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.841e+00;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.386;SOR=0.685;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:607,0,844
chr2	212615516	rs6757068	T	C	1566.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.890e-01;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=1.10;SOR=0.701;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:688,0,503
chr2	212812060	rs839540	T	C	147.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.03;SOR=3.258;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr2	212812097	rs839541	T	C	301.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.014e+00;DB;DP=8;ExcessHet=1.5490;FS=3.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-1.529e+00;SOR=0.120;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:313,24,0
chr2	212989308	rs6738304	T	C	456.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.60;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	212989410	rs6723461	G	C	112.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.390e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.91;ReadPosRankSum=-1.112e+00;SOR=0.527;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:121,0,441
chr2	213291226	rs34480397	C	CTCTT	1432.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=27;ExcessHet=1.5490;FS=2.262;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.15;ReadPosRankSum=-2.076e+00;SOR=1.751;VQSLOD=6.38;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:594,0,632
chr2	213291322	rs1505348	C	A	140.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=0.366;SOR=0.527;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:65:149,0,65
chr2	213872836	rs369935563	TA	T	129.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.88;MQRankSum=0.00;QD=1.37;ReadPosRankSum=-1.300e-02;SOR=0.693;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,4:24:27:27,0,867
chr2	213872853	rs147995454	TACA	T	1006.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=21;ExcessHet=3.9794;FS=2.887;MQ=59.69;MQRankSum=0.00;QD=20.12;ReadPosRankSum=0.247;SOR=1.296;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,11:21:99:432,0,629
chr2	213872868	rs76705042	A	C	1039.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=20;ExcessHet=3.9794;FS=7.430;MQ=59.64;MQRankSum=0.00;QD=22.11;ReadPosRankSum=-8.490e-01;SOR=1.949;VQSLOD=1.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:501,0,199
chr2	213872954	rs17355918	A	G	176.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=1.83;SOR=0.569;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:62:130,0,62
chr2	213878375	rs59507033	G	A	628.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-2.010e-01;SOR=0.465;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:197,0,407
chr2	213886454	rs2291241	A	T	8168.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-02;DB;DP=80;ExcessHet=3.0103;FS=1.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=-9.060e-01;SOR=0.831;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1034,0,891
chr2	213914343	rs2165444	C	T	2799.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=2.455;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1197,111,0
chr2	214012405	rs6738070	A	C	11559.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.46;SOR=1.384;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:106:99:3565,360,0
chr2	214012508	rs6709554	C	T	1263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.810e-01;DB;DP=118;ExcessHet=3.0103;FS=0.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.740;SOR=0.562;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,52:118:99:1272,0,1715
chr2	214015170	rs34358925	A	AG	650.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.630e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=1.44;SOR=0.892;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:148,12,0
chr2	214228792	rs12469417	C	T	4476.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.609;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1254,114,0
chr2	214228959	rs4146048	G	A	4342.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=1.304;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1315,108,0
chr2	214233812	rs6752347	C	A	4694.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=1.398;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1572,153,0
chr2	214726977	rs6710549	A	T	163.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=-9.670e-01;SOR=2.303;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:41,0,29
chr2	214726989	rs6739423	G	A	191.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.35;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:69,0,62
chr2	214727021	rs6710559	A	G	404.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.11;ReadPosRankSum=1.04;SOR=2.147;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:112,0,104
chr2	214727150	rs2042790	T	C	1826.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.452;DB;DP=33;ExcessHet=3.9794;FS=4.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=1.44;SOR=1.164;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:340,0,507
chr2	214727221	rs2042791	A	C	3678.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=58;ExcessHet=3.9794;FS=6.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-2.260e-01;SOR=1.116;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,29:58:99:784,0,711
chr2	214727367	rs2042792	C	G	4949.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DB;DP=87;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=0.617;SOR=0.714;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,40:87:99:1021,0,1161
chr2	214973200	rs200530814	CACA	C	159.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.66;SOR=3.258;VQSLOD=5.22;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:214973200_CACA_C:85,6,0:214973200
chr2	214973207	rs111564374	C	A	159.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.61;SOR=3.258;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:214973200_CACA_C:85,6,0:214973200
chr2	215102884	rs9288491	T	C	1071.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=50;ExcessHet=3.9794;FS=3.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=0.707;SOR=1.060;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:563,0,660
chr2	215102929	rs1912207	T	A	6149.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=0.745;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1637,162,0
chr2	215593233	rs5020511	T	C	115.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,71
chr2	215593261	rs33960630	C	CT	456.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=15.22;ReadPosRankSum=-3.490e-01;SOR=2.584;VQSLOD=4.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:4:126,0,4
chr2	215593851	rs2075623	G	C	180.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.35;SOR=0.473;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:95:95,0,106
chr2	215593871	rs2075622	T	G	93.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=0.674;SOR=0.368;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:72,0,69
chr2	215595440	rs3738887	T	A	705.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=8.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=0.328;SOR=3.056;VQSLOD=16.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:111,0,104
chr2	215595765	rs6435849	C	G	6301.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=1.514;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1761,164,0
chr2	215595861	rs34664471	G	GA	1685.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.830e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.55;ReadPosRankSum=0.633;SOR=0.898;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:89:254,0,89
chr2	215595872	rs28685662	G	A	2169.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.510e-01;DB;DP=17;ExcessHet=3.0103;FS=3.581;MQ=60.00;MQRankSum=0.00;QD=33.38;ReadPosRankSum=-4.950e-01;SOR=1.508;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:739,51,0
chr2	215609645	rs35411590	A	G	782.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.08;ReadPosRankSum=0.536;SOR=0.693;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:90:209,0,90
chr2	215610313	rs6730040	G	T	1401.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.467e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=0.978;SOR=1.609;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:240,0,271
chr2	215610740	rs1838803	A	T	899.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.38;ReadPosRankSum=0.189;SOR=3.528;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr2	215632256	rs2070093	A	G	4197.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=0.859;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4214,422,0
chr2	215645046	rs3768708	C	T	349.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:34:77,0,34
chr2	215645135	rs3768707	A	G	1428.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=5;ExcessHet=3.9794;FS=7.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.02;ReadPosRankSum=0.207;SOR=4.351;VQSLOD=13.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:60:111,0,60
chr2	215645464	rs2229571	C	G	1958.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=114;ExcessHet=3.0103;FS=0.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=-3.800e-01;SOR=0.604;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,64:114:99:1967,0,1323
chr2	215645545	rs2070096	C	G	1121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=107;ExcessHet=3.0103;FS=3.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-3.610e-01;SOR=0.925;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,44:107:99:1130,0,1615
chr2	215657182	.	TAA	T	1724.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e-01;DP=22;ExcessHet=3.0103;FS=1.707;MQ=60.00;MQRankSum=0.00;QD=22.69;ReadPosRankSum=0.435;SOR=0.417;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:22:99:185,0,262
chr2	215673937	rs13021937	C	T	1512.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=43;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.193e+00;SOR=0.958;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:594,0,952
chr2	215674090	rs35933323	T	G	8424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=266;ExcessHet=6.9897;FS=1.125;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.218;SOR=0.820;VQSLOD=5.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,136:266:99:3355,0,3172
chr2	215674224	rs1048108	G	A	4307.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071e+00;DB;DP=133;ExcessHet=3.9794;FS=17.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.517;SOR=0.252;VQSLOD=12.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,72:133:99:1994,0,1666
chr2	215674323	rs1129804	C	G	3157.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.862e+00;DB;DP=48;ExcessHet=6.9897;FS=5.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=0.215;SOR=0.340;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,24:48:99:0|1:215674323_C_G:939,0,912:215674323
chr2	215674341	rs17489363	A	G	2738.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.490e-01;DB;DP=39;ExcessHet=6.9897;FS=1.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=0.282;SOR=0.510;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,21:39:99:0|1:215674323_C_G:822,0,700:215674323
chr2	215674371	rs34732883	C	T	1153.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e-01;DB;DP=28;ExcessHet=3.9794;FS=5.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=1.20;SOR=1.377;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:446,0,335
chr2	215674436	rs13022992	C	T	1020.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.92;SOR=1.839;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:23:228,23,0
chr2	215797332	rs17426207	C	T	1609.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=50;ExcessHet=3.9794;FS=0.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.238;SOR=0.617;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:584,0,708
chr2	215797527	rs10532785	AATTC	A	2304.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=3.014;VQSLOD=6.26;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:73:1074,73,0
chr2	215798724	rs943295	A	C	153.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.366;SOR=1.371;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:98:98,0,166
chr2	215802112	rs3738884	G	A	638.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.58;ReadPosRankSum=0.568;SOR=1.214;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:291,0,121
chr2	215807361	rs2225063	C	T	70.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.82;SOR=2.303;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	215807888	rs11679293	G	T	459.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=2.03;SOR=0.399;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:153,0,129
chr2	215809597	rs10633768	G	GTA	243.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.37;ReadPosRankSum=0.697;SOR=0.175;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:94:95,0,94
chr2	215812297	rs2274412	G	A	2717.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.795;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=0.821;SOR=0.436;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,39:41:73:1076,73,0
chr2	215815408	rs4672739	C	T	161.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=7;ExcessHet=4.7712;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.00;SOR=0.132;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:105,0,101
chr2	215820013	rs10498027	G	A	2902.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.780e-01;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.24;ReadPosRankSum=0.912;SOR=0.268;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,37:38:74:1057,74,0
chr2	215821549	rs373508320	CA	C	189.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=18;ExcessHet=3.9794;FS=8.524;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.10;ReadPosRankSum=-3.560e-01;SOR=0.037;VQSLOD=4.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,3:18:26:26,0,342
chr2	215821580	rs17492577	T	C	403.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-1.026e+00;SOR=0.324;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:172,0,383
chr2	215823334	rs956132	C	T	153.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=7;ExcessHet=3.9794;FS=2.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=2.19;SOR=0.269;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:71:71,0,132
chr2	215823346	rs956133	A	G	137.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=1.93;SOR=0.437;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:95:95,0,144
chr2	215823982	rs10498029	T	C	370.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=0.658;SOR=0.507;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:118,0,208
chr2	215833415	rs4673925	A	G	2243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=44;ExcessHet=6.9897;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-1.661e+00;SOR=0.647;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,22:44:99:636,0,526
chr2	215833622	rs6756540	G	T	879.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-5.810e-01;SOR=0.670;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,14:18:99:466,0,105
chr2	215839748	rs7576757	G	A	261.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.9794;FS=4.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=1.11;SOR=0.113;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	215840414	rs17493319	C	A	1153.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=0.723;SOR=0.693;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:479,42,0
chr2	215840829	rs7594021	A	G	1374.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;DB;DP=23;ExcessHet=3.9794;FS=3.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=0.684;SOR=0.201;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:896,69,0
chr2	215843949	rs7593044	T	C	164.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=3.258;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:215843949_T_C:90,6,0:215843949
chr2	215843954	rs7579031	C	T	164.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.58;SOR=3.258;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:215843949_T_C:90,6,0:215843949
chr2	215847177	rs4610055	C	A	1189.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.099e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.31;ReadPosRankSum=0.552;SOR=3.500;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:324,0,174
chr2	215848034	rs7608150	T	C	2553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=2.303;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:754,63,0
chr2	215851246	rs7559069	A	G	2393.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=2.973;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:638,51,0
chr2	215851303	rs34351934	A	G	1976.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=55;ExcessHet=1.5490;FS=0.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=1.63;SOR=0.580;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,20:55:99:444,0,923
chr2	215851648	rs10755029	G	A	139.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=3.258;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr2	215854156	rs71428357	C	T	4069.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010e-01;DB;DP=54;ExcessHet=1.5490;FS=1.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=0.210;SOR=0.937;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:712,0,613
chr2	215855897	rs1880134	T	G	450.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.62;ReadPosRankSum=1.15;SOR=3.767;VQSLOD=16.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:96,0,31
chr2	215862383	rs1980844	G	A	1000.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.36;ReadPosRankSum=0.732;SOR=1.236;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:95:193,0,95
chr2	215862633	rs1326748	C	G	1596.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.68;POSITIVE_TRAIN_SITE;QD=24.96;SOR=5.235;VQSLOD=5.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:448,36,0
chr2	215862711	rs4673926	G	A	380.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=4.977;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:51,6,0
chr2	215862747	rs10714956	GA	G	158.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.35;SOR=3.912;VQSLOD=4.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chr2	215862772	rs4673927	C	G	194.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.97;SOR=3.611;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	215865575	rs10498030	T	C	2928.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=118;ExcessHet=3.9794;FS=1.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.213;SOR=0.751;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,59:118:99:1387,0,1458
chr2	215865849	rs2049361	G	A	1110.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.50;SOR=6.736;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:293,24,0
chr2	215866574	rs10169991	C	G	1064.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.25;SOR=6.593;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:451,33,0
chr2	215866599	rs1409610	C	G	426.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.02;SOR=4.977;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	215869066	rs34644785	T	C	827.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=21;ExcessHet=1.5490;FS=4.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-1.128e+00;SOR=2.066;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:369,0,256
chr2	215872334	rs940279	G	A	3860.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=57;ExcessHet=1.5490;FS=2.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=-3.980e-01;SOR=1.010;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:769,0,732
chr2	215874918	rs4673929	T	C	1034.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=6.593;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
chr2	215874965	rs6733264	G	T	890.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.157e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.911;SOR=0.892;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:311,0,329
chr2	215875251	rs1409607	A	T	2790.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=4.468;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:215875250_C_A:1026,75,0:215875250
chr2	215876166	rs7560008	A	T	4116.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=3.056;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1319,111,0
chr2	215876371	rs10198064	T	C	3357.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=77;ExcessHet=1.5490;FS=1.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.66;ReadPosRankSum=0.551;SOR=0.873;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1036,0,950
chr2	215876589	rs11388414	G	GT	2526.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.595;DB;DP=24;ExcessHet=3.0103;FS=1.571;MQ=59.93;MQRankSum=0.00;QD=21.41;ReadPosRankSum=0.072;SOR=1.329;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,20:24:43:503,43,0
chr2	215878240	rs7594353	G	A	7693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=0.728;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,58:58:99:1|1:215878240_G_A:2592,175,0:215878240
chr2	215878246	rs10192100	C	T	7883.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=0.738;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,58:58:99:1|1:215878240_G_A:2579,175,0:215878240
chr2	215878264	rs7594270	C	A	2633.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=58;ExcessHet=1.5490;FS=0.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=2.07;SOR=0.577;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,31:58:99:831,0,755
chr2	215878433	rs11896277	G	A	1047.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=-1.100e+00;SOR=1.204;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:221,0,383
chr2	215880108	rs6753310	C	T	718.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=1.5490;FS=4.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.26;ReadPosRankSum=1.20;SOR=2.636;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:143,0,126
chr2	215882529	rs6435868	G	A	1551.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.65;SOR=7.328;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:455,33,0
chr2	215883988	rs1403835	T	C	640.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=2.833;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr2	215890253	rs2177424	C	G	778.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=4.514;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr2	215890312	rs2177423	A	G	2173.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.70;POSITIVE_TRAIN_SITE;QD=33.12;SOR=4.892;VQSLOD=4.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:215890312_A_G:440,30,0:215890312
chr2	215890324	rs5838479	G	GT	2507.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.668;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.31;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=1.19;SOR=1.528;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:215890312_A_G:553,42,0:215890312
chr2	215890352	rs5838480	GTT	G	3266.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.67;MQRankSum=1.48;POSITIVE_TRAIN_SITE;QD=34.75;ReadPosRankSum=-4.020e-01;SOR=1.542;VQSLOD=1.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,18:21:19:473,19,0
chr2	215896316	rs4673935	A	G	433.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.75;SOR=5.136;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr2	215896349	rs4672744	T	G	976.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=6.273;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:215896349_T_G:270,18,0:215896349
chr2	215896352	rs4673936	A	G	976.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.25;SOR=6.273;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:215896349_T_G:270,18,0:215896349
chr2	215939940	rs2372478	A	C	366.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.01;SOR=4.615;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr2	215940242	rs6711179	T	C	7024.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.030e+00;DB;DP=85;ExcessHet=3.0103;FS=1.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=-1.101e+00;SOR=0.593;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2622,211,0
chr2	215976231	rs2948978	A	T	1240.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.17;SOR=5.728;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:30:281,30,0
chr2	216176648	rs78631308	A	G	1571.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.43;ReadPosRankSum=0.489;SOR=1.981;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,7:8:14:233,14,0
chr2	216176807	rs4535042	T	G	1529.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.229e+00;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=-1.554e+00;SOR=0.278;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1546,130,0
chr2	216182769	rs4672766	A	T	3025.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.75;SOR=3.116;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:507,45,0
chr2	216190020	rs2372536	C	G	3207.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=0.927;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3224,335,0
chr2	216190691	rs2177737	A	C	5868.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=32.60;SOR=2.124;VQSLOD=5.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1812,177,0
chr2	216191066	rs148878061	G	A	89.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.00;SOR=0.495;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,150
chr2	216197971	rs12995526	T	C	809.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=0.622;SOR=1.096;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:227,18,0
chr2	216199881	rs7594036	T	G	1001.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=6.439;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:290,21,0
chr2	216200907	rs13002576	C	G	4427.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.987e+00;DB;DP=82;ExcessHet=3.9794;FS=5.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.100;SOR=0.448;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2356,246,0
chr2	216209472	rs13010249	A	G	1287.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=1.559;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1304,134,0
chr2	216211712	rs10932609	A	T	4425.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.510;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1665,159,0
chr2	216212089	rs4673991	C	T	624.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=3.383;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:641,51,0
chr2	216212279	rs4673992	G	C	7088.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.824;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2294,221,0
chr2	216212339	rs4673993	T	C	1843.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.24;SOR=0.871;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1860,176,0
chr2	216214124	rs4672768	G	A	624.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=2.049;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:641,48,0
chr2	216229692	rs11651	A	G	1604.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.64;SOR=0.841;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1621,168,0
chr2	216230529	rs10577918	ATT	A	77.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.21;SOR=2.303;VQSLOD=6.28;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:216230529_ATT_A:90,6,0:216230529
chr2	216230535	rs147589042	T	A	77.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.29;SOR=2.303;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:216230529_ATT_A:90,6,0:216230529
chr2	216235089	rs1250209	C	T	12106.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.53;SOR=0.774;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3803,388,0
chr2	216235269	.	ACAAAAAAC	A	568.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DP=24;ExcessHet=1.5490;FS=6.932;MQ=60.00;MQRankSum=0.00;QD=12.64;ReadPosRankSum=1.10;SOR=0.160;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:5,19:24:1:578,1,0
chr2	216235388	rs1313044	A	G	683.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=1.11;SOR=0.368;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:119,0,63
chr2	216239759	rs10201850	A	G	292.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.57;ReadPosRankSum=0.349;SOR=2.494;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:45:301,0,45
chr2	216243832	rs1250204	T	C	8417.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=1.509;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2647,264,0
chr2	216244181	rs56886513	AGTAC	A	1062.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.29;SOR=6.439;VQSLOD=6.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr2	216248305	rs1250203	G	T	3420.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.39;SOR=3.684;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:689,60,0
chr2	216249587	rs13652	C	T	4756.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=0.866;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1533,162,0
chr2	216249819	rs1250201	C	T	899.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=3.098;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
chr2	216251538	rs139078629	G	A	1437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;DB;DP=93;ExcessHet=3.0103;FS=0.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=1.88;SOR=0.804;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,55:93:99:1446,0,925
chr2	216253039	rs1250215	G	C	2463.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.605e+00;DB;DP=51;ExcessHet=1.5490;FS=1.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=-5.120e-01;SOR=0.534;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1633,153,0
chr2	216256151	rs940739	T	A	261.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.842;SOR=1.329;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:103,0,65
chr2	216256221	rs4328631	T	G	967.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.528;SOR=0.990;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,10:22:99:0|1:216256221_T_G:381,0,554:216256221
chr2	216256227	rs940738	G	C	998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.320e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.821;SOR=0.818;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,10:24:99:0|1:216256221_T_G:378,0,595:216256221
chr2	216256615	rs6709607	T	C	2392.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=36;ExcessHet=3.9794;FS=2.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.178;SOR=1.121;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,14:36:99:357,0,673
chr2	216256707	rs10804242	T	C	684.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=1.10;SOR=1.302;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:52:52,0,214
chr2	216256775	rs6435905	A	G	144.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.84;ReadPosRankSum=1.28;SOR=1.981;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:152,0,24
chr2	216262621	rs6725958	A	C	7216.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=105;ExcessHet=3.9794;FS=1.821;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=0.722;SOR=0.822;VQSLOD=6.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1300,0,1322
chr2	216262788	rs2577297	A	G	3183.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=34;ExcessHet=3.9794;FS=0.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=1.20;SOR=0.609;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:532,0,367
chr2	216263926	rs2692224	C	A	3365.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=45;ExcessHet=3.9794;FS=5.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=3.08;SOR=1.255;VQSLOD=21.52;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:20,25:45:99:671,0,479
chr2	216263938	rs3832178	C	CT	3898.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=50;ExcessHet=3.9794;FS=5.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=2.66;SOR=1.266;VQSLOD=5.87;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:22,28:50:99:895,0,674
chr2	216264270	rs2372544	G	T	131.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=-6.740e-01;SOR=0.941;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:71,0,33
chr2	216269030	.	T	TTTTTTG	834.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.27;ReadPosRankSum=0.903;SOR=0.565;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,6:38:99:278,0,2000
chr2	216269046	rs56380797	G	T	1194.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-01;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.98;ReadPosRankSum=-1.127e+00;SOR=0.670;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,15:47:99:458,0,2046
chr2	216269095	rs13306359	C	T	1396.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=70;ExcessHet=3.9794;FS=2.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.251;SOR=0.891;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,25:70:99:622,0,1159
chr2	216269209	rs1053238	T	G	2393.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=90;ExcessHet=3.9794;FS=0.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=2.24;SOR=0.659;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,41:90:99:1125,0,1353
chr2	216269254	rs7589580	T	G	2958.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=101;ExcessHet=3.9794;FS=0.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-6.020e-01;SOR=0.736;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,52:101:99:1335,0,1300
chr2	216271763	rs17457002	A	T	218.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.992;SOR=0.582;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:136,0,103
chr2	216271812	rs7592898	A	T	634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767e+00;DB;DP=19;ExcessHet=3.9794;FS=3.118;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.124;SOR=0.088;VQSLOD=6.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:347,0,244
chr2	216272677	rs202098012	CCA	C	222.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.21;SOR=3.912;VQSLOD=5.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:69,6,0
chr2	216272819	rs7570208	C	G	2164.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.28;ReadPosRankSum=0.962;SOR=0.713;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:293,0,291
chr2	216272900	rs2577301	T	G	6645.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.47;SOR=1.118;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1384,123,0
chr2	216274853	rs370303960	A	AAC	2410.36	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=0.267;SOR=0.780;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:18:99:221,0,298
chr2	216285729	rs13416478	C	T	95.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:104,0,33
chr2	216287093	rs1250248	A	G	1457.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=2.59;SOR=1.835;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,13:19:99:0|1:216287093_A_G:522,0,373:216287093
chr2	216287097	rs13394972	A	G	516.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=2.48;SOR=1.739;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,12:17:99:0|1:216287093_A_G:525,0,338:216287093
chr2	216288795	rs11693652	G	A	549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=0.727;SOR=0.446;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:558,0,549
chr2	216289262	rs113409717	GTCCT	G	195.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=0.712;SOR=1.609;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:99:204,0,110
chr2	216295281	rs7560662	G	A	64.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:73,0,29
chr2	216295312	rs1250241	T	A	800.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=-7.920e-01;SOR=0.693;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:110,0,31
chr2	216295337	rs7586990	A	G	130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.313;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-2.980e-01;SOR=0.693;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:139,0,135
chr2	216296730	rs113868976	A	AT	614.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334e+00;DB;DP=53;ExcessHet=3.0103;FS=2.588;MQ=60.00;MQRankSum=0.00;QD=12.04;ReadPosRankSum=-4.000e-01;SOR=1.218;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,30:53:99:623,0,442
chr2	216296860	rs7567647	G	A	251.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=-1.074e+00;SOR=0.495;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:260,0,123
chr2	216297796	rs1250244	G	C	441.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=1.04;SOR=1.493;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:99,0,194
chr2	216297875	rs10202483	G	A	124.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-9.520e-01;SOR=1.609;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:133,0,165
chr2	216298084	rs2289202	G	A	1092.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=77;ExcessHet=3.0103;FS=3.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.929;SOR=0.486;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,41:77:99:1101,0,882
chr2	216298230	rs10202709	C	T	1081.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.820e-01;DB;DP=85;ExcessHet=3.0103;FS=1.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-9.970e-01;SOR=1.007;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1090,0,948
chr2	216299281	rs1250246	A	C	574.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.45;ReadPosRankSum=-9.670e-01;SOR=3.383;VQSLOD=18.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,1:3:32:32,0,73
chr2	216299571	rs10648691	T	TTAC	3870.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DB;DP=53;ExcessHet=3.9794;FS=7.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.01;ReadPosRankSum=1.28;SOR=1.472;VQSLOD=5.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,29:53:99:1145,0,975
chr2	216299629	rs1250247	C	G	1382.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.04;DB;DP=22;ExcessHet=3.9794;FS=4.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=-9.900e-02;SOR=2.189;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:431,0,284
chr2	216300185	rs1250258	C	T	849.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=6;ExcessHet=3.9794;FS=6.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.31;ReadPosRankSum=0.842;SOR=3.788;VQSLOD=14.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:59:141,0,59
chr2	216300482	rs1250259	T	A	2688.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=41;ExcessHet=3.9794;FS=3.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.366;SOR=1.020;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:440,0,723
chr2	216808271	.	T	C	633.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e-01;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.11;ReadPosRankSum=0.763;SOR=0.638;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,25:37:99:642,0,250
chr2	216861273	rs2303845	T	C	1583.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.99;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=-2.540e-01;SOR=0.971;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:618,45,0
chr2	216878008	rs1864253	C	G	14373.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=284;ExcessHet=3.9794;FS=1.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=0.734;SOR=0.857;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:161,123:284:99:2825,0,3743
chr2	216908833	.	G	A	225.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017e+00;DP=42;ExcessHet=3.0103;FS=3.160;MQ=60.00;MQRankSum=0.00;QD=5.36;ReadPosRankSum=1.81;SOR=0.242;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,12:42:99:234,0,919
chr2	216908910	rs1991533	T	C	1775.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=1.36;SOR=0.744;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:494,0,257
chr2	216961195	rs7576830	T	C	371.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=0.598;SOR=0.941;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:75:75,0,107
chr2	216982370	rs3815855	C	G	4671.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.330e-01;DB;DP=105;ExcessHet=1.5490;FS=0.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=3.08;SOR=0.597;VQSLOD=22.28;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3284,315,0
chr2	216991935	rs12694384	C	A	74.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=2.303;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	216992093	rs4503989	T	C	3706.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=2.411;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1455,129,0
chr2	217003152	rs2303400	T	C	1122.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=5.211;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:482,36,0
chr2	217012901	rs207906	A	G	3383.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=1.257;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1277,114,0
chr2	217055171	rs12470053	A	G	2923.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.23;SOR=3.098;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1187,96,0
chr2	217059428	rs3732023	G	A	1248.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.36;SOR=6.932;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:534,39,0
chr2	217069151	rs1438162	A	G	5477.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=1.555;VQSLOD=18.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2855,258,0
chr2	217081557	rs207896	T	C	4070.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.36;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=-1.169e+00;SOR=0.666;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1456,144,0
chr2	217082026	rs207897	C	T	828.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.53;ReadPosRankSum=1.15;SOR=1.863;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:343,24,0
chr2	217123958	rs169616	T	C	2285.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;DB;DP=24;ExcessHet=3.0103;FS=3.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=-6.030e-01;SOR=1.609;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:925,72,0
chr2	217148417	rs876771	C	A	3435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=122;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=2.24;SOR=0.704;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,52:122:99:1291,0,1807
chr2	217148546	rs2249264	A	G	623.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.931e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.50;ReadPosRankSum=-9.170e-01;SOR=0.818;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:409,30,0
chr2	217280261	rs10582846	GT	G	762.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870e-01;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.276;SOR=0.700;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,15:28:99:287,0,222
chr2	217281150	rs3214962	AC	A	2647.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=0.691;SOR=0.659;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,20:39:99:494,0,461
chr2	217311609	rs2738284	G	A	1253.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.423e+00;DB;DP=29;ExcessHet=3.9794;FS=15.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=1.35;SOR=0.052;VQSLOD=12.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,19:29:99:643,0,360
chr2	217329154	rs150984009	T	C	485.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=-7.970e-01;SOR=1.179;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:494,0,190
chr2	217364452	rs284573	C	G	356.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:117,0,65
chr2	217364539	rs284572	C	T	2305.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.680e-01;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=1.78;SOR=0.638;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1261,111,0
chr2	217384303	rs569067	C	T	120.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=1.65;SOR=0.412;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,110
chr2	217498290	rs11282764	C	CGCCGCTGCT	556.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.370e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=-4.050e-01;SOR=0.610;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr2	217498839	rs3770473	T	G	139.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=-4.050e-01;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:148,0,137
chr2	217541582	rs2160549	T	C	12098.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.87;SOR=0.708;VQSLOD=18.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3775,392,0
chr2	217736023	rs1179721	A	G	397.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.718e+00;DB;DP=3;ExcessHet=3.9794;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=0.674;SOR=1.473;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr2	217736131	rs2241191	G	A	669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=24;ExcessHet=3.9794;FS=2.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.234;SOR=1.161;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:232,0,354
chr2	218577457	rs1346766	T	C	280.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.99;SOR=4.174;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr2	218577575	rs1835333	T	A	1883.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.24;SOR=4.493;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:326,24,0
chr2	218577740	.	G	A	1137.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DP=111;ExcessHet=3.0103;FS=4.737;MQ=60.00;MQRankSum=0.00;QD=10.25;ReadPosRankSum=-8.400e-02;SOR=1.166;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,47:111:99:1146,0,1556
chr2	218577819	rs1430120	C	G	924.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.686e+00;DB;DP=75;ExcessHet=3.0103;FS=6.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=1.86;SOR=0.261;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,39:75:99:933,0,1040
chr2	218578035	rs934240	C	T	260.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=0.431;SOR=1.445;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:246,18,0
chr2	218604247	rs4672848	A	C	3683.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.37;SOR=2.280;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1334,114,0
chr2	218604302	rs11336139	GA	G	541.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690e-01;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.84;ReadPosRankSum=0.468;SOR=0.631;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,26:55:99:550,0,640
chr2	218604356	rs4294980	G	A	2908.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DB;DP=57;ExcessHet=3.9794;FS=6.073;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=1.14;SOR=1.156;VQSLOD=6.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,26:57:99:601,0,748
chr2	218620552	rs2052928	C	T	783.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.07;ReadPosRankSum=-1.006e+00;SOR=3.352;VQSLOD=18.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr2	218758123	.	GCA	G	816.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e-01;DP=56;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.14;ReadPosRankSum=-7.500e-02;SOR=0.640;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,11:56:99:202,0,1252
chr2	218770992	.	A	C	133.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=9;ExcessHet=3.0103;FS=13.222;MQ=59.26;MQRankSum=-5.890e-01;NEGATIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-1.200e+00;SOR=3.590;VQSLOD=-2.888e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:218770988_T_TA:140,0,193:218770988
chr2	218784877	rs7590152	A	G	1773.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146e+00;DB;DP=134;ExcessHet=3.0103;FS=0.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=1.50;SOR=0.616;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,72:134:99:1782,0,1593
chr2	218801767	rs4674232	C	T	9512.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.267;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2629,249,0
chr2	218801898	rs111945882	TCTACTCCC	T	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e-01;DB;DP=14;ExcessHet=3.0103;FS=4.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=2.12;SOR=0.061;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:184,0,799
chr2	218937085	.	T	C	1030.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DP=96;ExcessHet=3.0103;FS=2.627;MQ=60.00;MQRankSum=0.00;QD=10.73;ReadPosRankSum=0.302;SOR=0.824;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,44:96:99:1039,0,1271
chr2	218939630	rs10932744	C	T	508.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.480;SOR=0.782;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:61:152,0,61
chr2	218941095	rs6759925	C	G	258.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=16;ExcessHet=3.9794;FS=5.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=1.56;SOR=2.428;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:162,0,316
chr2	218954924	.	G	A	108.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.11;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:117,0,28
chr2	219082119	rs2271541	G	T	12160.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=1.545;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3611,338,0
chr2	219082330	rs12694432	A	G	11607.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=1.777;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3373,321,0
chr2	219082560	rs10187683	T	G	421.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.43;SOR=3.442;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr2	219090365	rs9789363	T	C	341.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=2.303;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:182,18,0
chr2	219090422	rs6757318	G	A	1044.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.23;SOR=5.211;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:409,30,0
chr2	219093278	rs60528331	A	G	2159.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.83;SOR=4.548;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:562,51,0
chr2	219099260	rs1018288	G	C	3583.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=4.407;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1017,75,0
chr2	219099484	rs10932765	T	C	5029.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.93;SOR=2.849;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1320,120,0
chr2	219103313	.	CTTTT	C,CT	3480.59	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.030e-01;DP=39;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.13;ReadPosRankSum=-7.040e-01;SOR=1.923;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,12,15:39:99:1256,319,209,383,0,269
chr2	219103580	rs10169718	A	G	4815.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.15;SOR=2.720;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1418,129,0
chr2	219104316	.	ATT	A,AT	2514.75	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.685;DP=42;ExcessHet=3.0103;FS=3.683;MQ=59.96;MQRankSum=0.00;QD=20.45;ReadPosRankSum=1.04;SOR=0.283;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,10,30:42:99:900,592,686,214,0,128
chr2	219110555	rs12996912	A	G	563.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=4.047;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr2	219114671	rs55688902	A	G	571.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=18;ExcessHet=3.9794;FS=1.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=-4.100e-02;SOR=1.162;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:385,0,220
chr2	219117482	rs35271699	G	A	1607.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=7.428;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
chr2	219118831	rs376913304	TA	T	248.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.050e-01;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;QD=4.29;ReadPosRankSum=0.896;SOR=0.765;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,5:19:67:67,0,267
chr2	219128506	rs2292549	C	T	13477.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.79;SOR=1.692;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4003,368,0
chr2	219129060	rs2382816	A	G	727.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.12;SOR=4.294;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:304,21,0
chr2	219129080	.	G	C	41.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.44;ReadPosRankSum=0.323;SOR=0.307;VQSLOD=20.95;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:50:50,0,397
chr2	219134950	rs13419763	C	T	2123.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.77;SOR=4.255;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:474,36,0
chr2	219136684	rs1457459	A	G	268.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=4.174;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr2	219138940	rs4791	C	T	2547.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.959e+00;DB;DP=24;ExcessHet=3.0103;FS=3.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=-1.267e+00;SOR=0.297;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:654,71,0
chr2	219139573	rs6734242	G	A	2243.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.67;SOR=8.051;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:650,48,0
chr2	219141546	rs4674281	C	T	1059.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.07;SOR=5.211;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
chr2	219142023	rs2168703	G	A	3088.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=1.981;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1187,104,0
chr2	219142492	rs2168704	G	A	7565.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=34.23;SOR=1.059;VQSLOD=4.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2107,194,0
chr2	219142773	rs6707559	C	T	4298.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.117;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.57;ReadPosRankSum=0.627;SOR=0.987;VQSLOD=6.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1305,123,0
chr2	219142860	rs13429408	C	A	1371.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.14;SOR=4.743;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:411,30,0
chr2	219144815	rs2045435	T	C	8908.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.10;SOR=0.792;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2600,273,0
chr2	219146803	rs2292553	G	A	2071.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=32.88;SOR=1.573;VQSLOD=5.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:98:1029,98,0
chr2	219153983	rs10707182	GA	G	2751.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.92;SOR=4.033;VQSLOD=5.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:899,72,0
chr2	219187901	rs1870125	C	T	3758.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.40;ReadPosRankSum=0.645;SOR=7.784;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1111,87,0
chr2	219206919	rs3816562	C	T	3492.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=1.774;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1124,102,0
chr2	219209393	rs1350336	A	G	3442.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=0.995;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1247,87,0
chr2	219221982	rs144807145	G	GTC	1368.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.50;ReadPosRankSum=0.435;SOR=3.486;VQSLOD=6.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,11:13:22:332,0,22
chr2	219222123	rs10172824	C	T	444.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=1.802;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr2	219225162	rs4674296	T	C	1306.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.32;SOR=3.675;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:405,33,0
chr2	219225552	.	GT	G	94.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.54;ReadPosRankSum=1.93;SOR=0.293;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,3:9:51:0|1:219225552_GT_G:51,0,106:219225552
chr2	219225555	rs13415819	T	G	391.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.49;ReadPosRankSum=1.04;SOR=1.688;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:51:1|0:219225552_GT_G:106,0,51:219225552
chr2	219225556	.	T	G	94.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.54;ReadPosRankSum=1.93;SOR=0.293;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,3:9:51:0|1:219225552_GT_G:51,0,106:219225552
chr2	219227756	rs6723716	T	C	2390.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.104e+00;DB;DP=19;ExcessHet=3.0103;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.17;ReadPosRankSum=-1.932e+00;SOR=1.341;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:722,57,0
chr2	219231807	rs3845833	C	T	7321.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=1.287;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2135,213,0
chr2	219232354	rs7608923	C	A	8138.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.182;DB;DP=97;ExcessHet=3.0103;FS=16.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.59;ReadPosRankSum=-8.700e-01;SOR=0.360;VQSLOD=12.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3282,291,0
chr2	219254622	rs2695342	A	G	12850.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=0.802;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4194,410,0
chr2	219255695	rs116003063	G	A	109.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.79;ReadPosRankSum=0.319;SOR=1.329;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,133
chr2	219257688	rs2045433	T	C	10506.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.57;SOR=1.107;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3731,348,0
chr2	219262887	rs62182123	A	G	149.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=1.83;SOR=1.329;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:158,0,67
chr2	219263277	rs2695344	A	G	5064.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.34;SOR=6.358;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1665,123,0
chr2	219265094	rs2579958	T	C	6977.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=0.785;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2357,246,0
chr2	219265136	rs11463820	T	TC	7569.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=1.151;VQSLOD=5.88;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2750,223,0
chr2	219265168	rs3795982	T	C	2278.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.280e-01;DB;DP=61;ExcessHet=1.5490;FS=0.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.585;SOR=0.545;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,31:61:99:686,0,692
chr2	219265396	rs3795985	C	T	7259.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=199;ExcessHet=1.5490;FS=0.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=-4.950e-01;SOR=0.642;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,80:199:99:1759,0,3066
chr2	219265677	rs115254818	G	C	2452.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DB;DP=40;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=0.951;SOR=0.890;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,15:40:99:403,0,792
chr2	219266108	rs2607726	C	G	763.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=5.892;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:349,24,0
chr2	219266204	rs2252235	T	C	630.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.173e+00;DB;DP=36;ExcessHet=3.0103;FS=3.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-6.750e-01;SOR=0.215;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:639,0,533
chr2	219266632	rs2607727	C	T	118.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=1.21;SOR=0.283;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:127,0,328
chr2	219267781	rs2227255	C	T	1673.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=135;ExcessHet=3.0103;FS=11.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.41;SOR=0.233;VQSLOD=17.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,64:135:99:1682,0,2092
chr2	219267901	rs2227257	G	A	8623.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e-01;DB;DP=332;ExcessHet=3.9794;FS=1.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.892;SOR=0.785;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:162,170:332:99:3845,0,3793
chr2	219267913	rs2227258	A	G	4003.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=319;ExcessHet=3.0103;FS=0.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-3.870e-01;SOR=0.708;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:160,159:319:99:4012,0,3820
chr2	219268698	rs2695339	A	G	234.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.881e+00;DB;DP=23;ExcessHet=3.0103;FS=4.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-3.790e-01;SOR=0.086;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:243,0,497
chr2	219268803	rs2579959	G	A	880.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=61;ExcessHet=3.0103;FS=4.276;MQ=59.81;MQRankSum=-1.334e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-2.196e+00;SOR=1.476;VQSLOD=0.254;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,32:61:99:889,0,844
chr2	219288382	rs4672893	A	G	8719.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.42;SOR=3.066;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2972,240,0
chr2	219288899	rs3731866	C	T	1924.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=-1.190e-01;SOR=0.836;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1073,90,0
chr2	219290676	rs3888879	C	T	222.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.410e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.623;SOR=0.859;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr2	219294258	rs6720403	A	C	13280.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.59;DB;DP=205;ExcessHet=3.9794;FS=1.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.876;SOR=0.560;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,205:205:99:6727,615,0
chr2	219295249	rs3821031	C	T	196.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=0.431;SOR=0.859;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr2	219296545	rs17572485	G	A	7154.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.586e+00;DB;DP=120;ExcessHet=3.9794;FS=0.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-2.020e-01;SOR=0.635;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3561,359,0
chr2	219299817	rs3217689	ACT	A	2325.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=17;ExcessHet=3.9794;FS=2.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.82;ReadPosRankSum=-6.400e-02;SOR=1.209;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:740,51,0
chr2	219319657	rs6436058	A	G	3569.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=1.042;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1264,120,0
chr2	219319885	rs7601872	C	G	156.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=3.258;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr2	219320233	rs139275139	GAA	G,GA	2001.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.830e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;QD=24.41;ReadPosRankSum=1.47;SOR=1.262;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,15:20:64:440,283,302,123,0,64
chr2	219341618	rs61752209	C	G	1680.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=81;ExcessHet=3.9794;FS=1.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.832;SOR=0.556;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,30:81:99:746,0,1308
chr2	219341827	rs72965147	A	G	326.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.67;ReadPosRankSum=-6.740e-01;SOR=2.494;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:232,18,0
chr2	219350358	.	C	CAA	647.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DP=12;ExcessHet=3.9794;FS=7.639;MQ=59.50;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=0.409;SOR=2.419;VQSLOD=5.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:12:79:91,0,79
chr2	219352898	.	CAAA	C	177.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.23;ReadPosRankSum=-1.150e+00;SOR=2.833;VQSLOD=4.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:2:111,2,0
chr2	219423520	rs4674314	T	C	428.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=1.01;SOR=0.892;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr2	219445894	.	T	C	261.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.85;ReadPosRankSum=2.55;SOR=0.899;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:21:99:251,0,533
chr2	219445990	rs586296	G	C	525.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.35;SOR=5.136;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr2	219447612	rs111430766	CT	C	136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.01;ReadPosRankSum=-3.750e-01;SOR=0.593;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:145,0,171
chr2	219447912	rs2952825	A	G	4523.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=59.05;QD=36.48;SOR=2.163;VQSLOD=3.14;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1416,114,0
chr2	219447952	.	GTGTGTCTCTCTCTCTCTCTCTCTC	GTCTCTCTC,*	214.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=6;ExcessHet=3.9794;FS=0.000;MQ=58.41;QD=12.60;SOR=6.439;VQSLOD=1.06;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,4:6:25:201,112,225,25,0,250
chr2	219472734	rs3731867	G	A	6293.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.71;DB;DP=102;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=0.779;SOR=0.695;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3213,306,0
chr2	219505653	rs34502703	AT	A	72.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.03;ReadPosRankSum=0.992;SOR=0.446;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:36:81,0,36
chr2	219508372	rs3770213	A	T	6321.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.920e-01;DB;DP=95;ExcessHet=3.9794;FS=3.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-5.130e-01;SOR=0.867;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3189,285,0
chr2	219513782	rs4674322	T	C	3341.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DB;DP=138;ExcessHet=3.9794;FS=4.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.196;SOR=0.951;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,54:138:99:1349,0,2124
chr2	219525582	rs6722185	A	G	6583.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=1.786;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2466,195,0
chr2	219527005	rs2303561	C	T	2413.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641e+00;DB;DP=44;ExcessHet=3.9794;FS=1.210;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.472;SOR=0.578;VQSLOD=6.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1292,131,0
chr2	219529348	rs2243911	C	T	4368.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=74;ExcessHet=3.9794;FS=7.754;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=0.753;SOR=1.076;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2429,222,0
chr2	219532903	rs2556384	C	T	8916.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.740;DB;DP=97;ExcessHet=3.9794;FS=3.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-1.271e+00;SOR=0.555;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,97:97:99:1|1:219532903_C_T:4402,295,0:219532903
chr2	219532905	rs2556385	G	A	8916.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.667;DB;DP=98;ExcessHet=3.9794;FS=3.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=-7.810e-01;SOR=0.563;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,98:98:99:1|1:219532903_C_T:4402,295,0:219532903
chr2	219538799	rs7604319	A	C	1704.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.999e+00;DB;DP=30;ExcessHet=3.9794;FS=0.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.948;SOR=0.521;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:938,90,0
chr2	219540243	rs33970984	CTT	C	572.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.690e-01;DB;DP=33;ExcessHet=6.9897;FS=4.772;MQ=59.63;MQRankSum=-7.240e-01;POSITIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=0.218;SOR=1.508;VQSLOD=0.066;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:33:99:230,0,330
chr2	219541056	rs2556388	T	C	1921.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.04;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=-1.068e+00;SOR=0.768;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:817,69,0
chr2	219545309	rs2303565	T	C	13533.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.940e-01;DB;DP=234;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.770;SOR=0.667;VQSLOD=6.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,233:234:99:7226,661,0
chr2	219555262	rs1344642	G	A	4705.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.75;DB;DP=62;ExcessHet=3.9794;FS=3.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=1.64;SOR=0.818;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2087,186,0
chr2	219557738	rs2303566	G	A	785.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.34;DB;DP=7;ExcessHet=3.9794;FS=4.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=0.411;SOR=1.911;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr2	219558193	rs55996799	C	G	1129.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.983;DB;DP=13;ExcessHet=3.9794;FS=3.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=2.72;SOR=1.495;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:476,39,0
chr2	219562675	rs1863704	G	A	7017.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=103;ExcessHet=3.9794;FS=1.319;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=0.489;SOR=0.776;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3183,307,0
chr2	219602499	rs3731877	G	C	6476.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=99;ExcessHet=3.9794;FS=2.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=1.04;SOR=0.885;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3304,296,0
chr2	219602819	rs3731876	G	A	9884.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=147;ExcessHet=3.9794;FS=1.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=0.089;SOR=0.547;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4672,440,0
chr2	219605118	rs7562426	G	A	1916.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=28;ExcessHet=3.9794;FS=1.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=0.434;SOR=0.954;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1022,84,0
chr2	219609776	rs2272191	G	A	3570.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=57;ExcessHet=3.9794;FS=8.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.801;SOR=0.314;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1707,171,0
chr2	219609995	rs2272190	G	C	1961.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.493e+00;DB;DP=24;ExcessHet=3.9794;FS=7.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=-4.900e-01;SOR=0.210;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,23:24:30:746,30,0
chr2	219610322	rs2272189	G	A	1352.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055e+00;DB;DP=12;ExcessHet=6.9897;FS=2.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.156;SOR=1.012;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,11:12:8:357,0,8
chr2	219610433	rs586194	A	G	3306.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.130;DB;DP=57;ExcessHet=3.9794;FS=1.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=1.43;SOR=0.846;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,56:57:99:1667,131,0
chr2	219611434	rs6729341	T	G	364.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=0.842;SOR=1.179;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:189,15,0
chr2	219612282	rs2272188	A	G	4001.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.830e+00;DB;DP=72;ExcessHet=3.9794;FS=2.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=0.171;SOR=0.527;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,71:72:99:2083,173,0
chr2	219614190	rs368058156	CT	C	38.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782e+00;DB;DP=19;ExcessHet=3.0103;FS=2.754;MQ=60.00;MQRankSum=0.00;QD=2.01;ReadPosRankSum=1.12;SOR=0.169;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,4:19:47:47,0,299
chr2	219616633	rs59713184	C	T	354.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.120e-01;DB;DP=2;ExcessHet=1.5490;FS=2.048;MQ=59.61;MQRankSum=0.00;QD=14.77;ReadPosRankSum=-1.355e+00;SOR=0.382;VQSLOD=2.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:42,6,0
chr2	219616681	rs6708650	A	G	449.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=58.31;MQRankSum=0.00;QD=28.11;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=2.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr2	219618237	rs6436073	A	C	3025.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.26;DB;DP=47;ExcessHet=3.9794;FS=0.898;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.92;ReadPosRankSum=0.601;SOR=0.564;VQSLOD=6.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1584,141,0
chr2	219618497	rs6757772	T	G	2546.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=36;ExcessHet=3.9794;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=1.17;SOR=0.991;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1357,108,0
chr2	219618708	rs55900247	T	C	819.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.056e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=-5.140e-01;SOR=0.651;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:598,45,0
chr2	219674165	.	CTTT	C	120.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=13;ExcessHet=3.9794;FS=1.604;MQ=59.20;MQRankSum=0.126;POSITIVE_TRAIN_SITE;QD=6.68;ReadPosRankSum=-4.640e-01;SOR=1.179;VQSLOD=1.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:13:94:94,0,242
chr2	219678421	rs691066	C	T	320.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-1.222e+00;SOR=0.602;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	219691566	rs1467320	A	G	1619.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=25;ExcessHet=1.5490;FS=2.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.00;ReadPosRankSum=-2.220e-01;SOR=0.228;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:545,0,335
chr2	219692527	rs11385903	G	GC	5191.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.71;SOR=1.085;VQSLOD=5.56;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1712,153,0
chr2	219692696	rs1722196	G	C	4548.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DB;DP=89;ExcessHet=1.5490;FS=9.149;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=1.61;SOR=0.335;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,45:89:99:1178,0,1120
chr2	219692790	rs5838710	A	AG	9144.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.62;SOR=1.191;VQSLOD=5.83;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2586,232,0
chr2	219695487	rs692243	G	C	1624.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.744e+00;DB;DP=24;ExcessHet=1.5490;FS=1.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=-2.089e+00;SOR=0.416;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:221,0,493
chr2	219696014	rs650898	G	A	5392.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=0.761;VQSLOD=19.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1466,140,0
chr2	219736472	rs13417214	G	A	1318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=1.12;SOR=0.649;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,54:116:99:1327,0,1471
chr2	219888259	rs11891205	A	G	84.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650e+00;DB;DP=16;ExcessHet=3.0103;FS=2.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.27;ReadPosRankSum=0.624;SOR=0.148;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:93:93,0,349
chr2	219892233	rs61749573	T	A	2841.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=92;ExcessHet=3.9794;FS=2.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.047;SOR=0.510;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,48:92:99:1371,0,1226
chr2	219903258	rs6736922	T	G	6262.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=0.913;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3400,339,0
chr2	219903723	rs4674354	C	T	3570.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=0.4576;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=30.26;SOR=0.914;VQSLOD=4.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1827,182,0
chr2	219903787	rs4672910	T	C	3173.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=2.303;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1625,144,0
chr2	219906066	rs11674400	C	A	1042.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=3.841;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:329,27,0
chr2	219906565	rs1546322	C	T	286.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.19;SOR=4.407;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	219919754	rs3099	G	C	1711.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.68;SOR=6.091;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:972,72,0
chr2	219920037	rs394452	A	G	16910.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=0.4576;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.16;SOR=0.966;VQSLOD=3.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,272:272:99:8744,816,0
chr2	219920412	rs3731881	A	G	11489.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.550e-01;DB;DP=190;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.50;ReadPosRankSum=0.857;SOR=0.364;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,189:190:99:6148,528,0
chr2	219922073	rs34694069	G	GC	3407.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=2.494;VQSLOD=5.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1787,144,0
chr2	219923410	rs57408770	G	GAGA	5152.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.93;ReadPosRankSum=1.15;SOR=1.428;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,71:73:99:2202,172,0
chr2	219941063	rs897477	G	A	3864.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=0.822;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1669,164,0
chr2	220012576	rs7585742	G	C	3128.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.870;DB;DP=40;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=1.62;SOR=1.935;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1406,119,0
chr2	220022074	rs12694451	A	G	294.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=4.174;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:222,15,0
chr2	220022176	rs6436120	C	T	1560.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.71;SOR=3.417;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:292,24,0
chr2	220022435	rs2030452	G	C	2608.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.264;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1452,141,0
chr2	220022711	rs59900739	TCTCACACA	T,TCA	544.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.54;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=59.73;MQRankSum=0.00;QD=23.70;ReadPosRankSum=1.30;SOR=0.646;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,7:10:48:251,137,191,48,0,157
chr2	220023196	rs2293069	A	C	620.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=4.174;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:328,27,0
chr2	220026369	rs6713887	G	T	1034.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.08;SOR=3.258;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:444,33,0
chr2	220027399	rs12694452	T	C	246.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.32;SOR=3.912;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	220028707	rs7575555	G	A	284.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.44;SOR=2.833;VQSLOD=18.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	220028900	rs6753739	A	G	3208.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=1.085;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1626,165,0
chr2	220033830	rs3795986	A	G	5816.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=0.705;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2918,273,0
chr2	220033956	rs6436121	T	C	5858.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=0.796;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2869,270,0
chr2	220037097	rs11236	C	T	497.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=5.283;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr2	220037393	rs4674361	A	G	11678.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.26;SOR=0.821;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4197,390,0
chr2	220037666	rs1127102	A	G	5422.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.130e-01;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.09;ReadPosRankSum=-2.420e-01;SOR=0.298;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2773,215,0
chr2	220037756	rs1043160	A	G	6780.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.180e-01;DB;DP=112;ExcessHet=0.4576;FS=3.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=-1.550e-01;SOR=0.495;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,111:112:99:3567,295,0
chr2	220039272	rs7593818	G	C	739.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.30;SOR=2.303;VQSLOD=18.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:358,27,0
chr2	220040330	rs1127101	A	G	6930.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.64;SOR=0.710;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3124,329,0
chr2	220041091	rs6436123	G	A	3310.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=1.542;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1573,153,0
chr2	220041222	rs10548905	CAT	C	745.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.05;SOR=2.179;VQSLOD=5.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr2	220041433	rs6436124	C	A	8455.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=125;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.42;ReadPosRankSum=-3.740e-01;SOR=2.378;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,124:125:99:3875,358,0
chr2	220041455	rs6436125	C	T	21923.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=179;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.47;SOR=2.340;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,179:179:99:5881,536,0
chr2	220046349	rs2272017	G	C	10649.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.618;DB;DP=150;ExcessHet=3.0103;FS=2.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=1.32;SOR=0.955;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4570,448,0
chr2	220046975	rs3731900	C	A	11108.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=181;ExcessHet=0.4576;FS=6.053;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=0.516;SOR=0.063;VQSLOD=6.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,179:181:99:5752,519,0
chr2	220047393	rs3731901	C	T	2493.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=4.047;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1350,104,0
chr2	220071803	rs6714820	C	G	6740.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.561e+00;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.31;ReadPosRankSum=-8.300e-01;SOR=0.469;VQSLOD=6.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,70:71:99:2480,168,0
chr2	220072766	rs4674366	G	T	4977.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.72;SOR=1.473;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1539,120,0
chr2	220072852	rs4674367	C	T	5059.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.130e-01;DB;DP=54;ExcessHet=3.0103;FS=0.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=0.507;SOR=0.918;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1987,162,0
chr2	220078496	rs2139823	T	C	4629.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.76;SOR=1.420;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1241,108,0
chr2	220082642	.	TAA	T	148.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DP=21;ExcessHet=3.9794;FS=9.717;MQ=60.00;MQRankSum=0.00;QD=2.80;ReadPosRankSum=0.112;SOR=1.240;VQSLOD=2.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,4:21:89:89,0,418
chr2	220083279	rs1109866	C	T	17386.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=-7.170e-01;SOR=0.757;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5025,481,0
chr2	220083453	rs1109867	G	T	3760.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.30;SOR=4.283;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1153,95,0
chr2	220085845	rs2276633	A	G	31495.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=372;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.28;ReadPosRankSum=1.35;SOR=0.713;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,372:372:99:11052,1114,0
chr2	220087503	.	C	T	1815.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.213;DP=180;ExcessHet=3.0103;FS=1.164;MQ=60.00;MQRankSum=0.00;QD=10.08;ReadPosRankSum=1.93;SOR=0.809;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,81:180:99:1824,0,2362
chr2	220088248	rs908196	A	G	4650.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.98;SOR=1.228;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1240,117,0
chr2	220089590	rs3216709	T	TG	11887.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.48;SOR=0.796;VQSLOD=2.63;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3345,310,0
chr2	220089685	rs2276637	G	C	12461.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=34.05;SOR=0.749;VQSLOD=4.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3820,351,0
chr2	220107011	rs34455694	GT	G	483.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.42;SOR=3.611;VQSLOD=5.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:236,27,0
chr2	220108514	rs10194492	A	G	1035.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.61;SOR=2.468;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:329,27,0
chr2	220113242	rs7601549	T	G	11894.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=1.872;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3945,339,0
chr2	220113384	rs8447	G	A	1575.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.27;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=1.52;SOR=1.569;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:760,54,0
chr2	220117333	rs6712442	T	G	3109.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=1.65;SOR=0.880;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,20:21:28:672,28,0
chr2	220118090	rs370821428	T	G	3611.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=151;ExcessHet=3.9794;FS=4.768;MQ=60.00;MQRankSum=0.00;QD=12.90;ReadPosRankSum=-3.350e-01;SOR=0.959;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,76:151:99:1875,0,1763
chr2	220118531	rs939574	G	C	7714.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=0.773;VQSLOD=19.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2015,204,0
chr2	220135208	rs2891733	C	T	7406.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.01;SOR=5.773;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2154,165,0
chr2	220136155	rs7594971	T	C	43019.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=466;ExcessHet=3.0103;FS=0.000;MQ=48.58;POSITIVE_TRAIN_SITE;QD=32.10;SOR=1.165;VQSLOD=-8.976e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,466:466:99:14525,1396,0
chr2	220136351	rs3731892	G	A	29125.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150e-01;DB;DP=357;ExcessHet=3.0103;FS=1.560;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=0.435;SOR=0.557;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,357:357:99:12409,1070,0
chr2	220136371	rs3731894	T	C	31626.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=326;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=34.04;SOR=1.175;VQSLOD=2.98;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,326:326:99:10704,979,0
chr2	220160727	rs79133925	T	C	65.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.62;ReadPosRankSum=0.312;SOR=0.387;VQSLOD=20.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:74:74,0,394
chr2	220197929	rs368227495	CT	C	786.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.247e+00;DB;DP=50;ExcessHet=6.9897;FS=8.313;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.50;ReadPosRankSum=0.331;SOR=0.323;VQSLOD=5.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,21:50:99:342,0,328
chr2	220239534	rs3731904	G	A	4529.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.94;SOR=2.871;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1487,126,0
chr2	220239561	rs3731905	C	G	6199.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=1.688;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2014,180,0
chr2	220246218	rs6436148	T	C	14144.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=0.773;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4378,414,0
chr2	220248195	rs10932802	C	T	1189.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=23.13;SOR=6.869;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:546,39,0
chr2	220248927	rs10804272	A	G	1730.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=7.428;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:515,36,0
chr2	220249299	rs5838737	C	CT	4602.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=5.447;VQSLOD=5.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1420,147,0
chr2	220249329	rs2002892	C	T	4575.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.79;POSITIVE_TRAIN_SITE;QD=25.39;SOR=7.258;VQSLOD=6.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:98:1292,98,0
chr2	220249908	rs1877868	T	C	1970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.07;SOR=2.833;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:486,45,0
chr2	220250147	rs907679	A	G	10073.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=1.276;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3492,350,0
chr2	220250322	rs878437	C	A	10524.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=119;ExcessHet=3.0103;FS=4.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.69;ReadPosRankSum=0.146;SOR=1.063;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,118:119:99:3652,345,0
chr2	220250826	rs2271456	G	A	6213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=1.254;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1941,191,0
chr2	220250897	rs11352428	AG	A	3082.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=1.583;VQSLOD=5.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,27:27:81:962,81,0
chr2	220251178	rs2271457	T	C	13269.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=1.270;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5120,513,0
chr2	220251208	rs1040009	T	C	4524.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=137;ExcessHet=6.9897;FS=0.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-1.226e+00;SOR=0.726;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,59:137:99:1697,0,1900
chr2	220252287	rs138394024	CTCG	C	7656.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.94;SOR=1.568;VQSLOD=4.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2238,154,0
chr2	220252662	rs62193999	T	G	822.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.03;SOR=6.091;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr2	220264412	rs13018645	A	G	3317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=77;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.724;SOR=0.678;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1126,0,976
chr2	220264543	rs58721028	C	CAT	14673.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.38;SOR=0.762;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,117:117:99:5251,355,0
chr2	220283259	rs1318299	A	G	8171.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=1.157;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2702,258,0
chr2	220283277	rs2017800	T	C	9551.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=1.115;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3176,294,0
chr2	220283826	rs907677	T	G	6767.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=1.228;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2212,216,0
chr2	220284717	rs2666106	G	C	1660.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=3.467;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:674,51,0
chr2	220284779	rs12991025	C	T	2258.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=-2.130e-01;SOR=0.706;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:557,0,443
chr2	220285309	rs1058261	C	T	2785.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DB;DP=181;ExcessHet=3.9794;FS=7.073;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=0.609;SOR=1.059;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,66:181:99:1500,0,3020
chr2	220285666	rs12920	G	C	3724.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=130;ExcessHet=3.9794;FS=0.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.924;SOR=0.617;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,69:130:99:1914,0,1585
chr2	220286142	rs1058284	G	A	2479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DB;DP=107;ExcessHet=3.9794;FS=0.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.140;SOR=0.736;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,49:107:99:1131,0,1512
chr2	220306413	rs4674398	G	T	4520.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=1.067;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1462,146,0
chr2	220308581	rs10932805	A	C	2981.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=4.587;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:655,48,0
chr2	220312546	.	C	CGTGGGG	311.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DP=42;ExcessHet=3.0103;FS=2.464;MQ=60.00;MQRankSum=0.00;QD=7.41;ReadPosRankSum=-9.970e-01;SOR=1.664;VQSLOD=5.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,9:42:99:320,0,2247
chr2	220315970	rs10932806	G	A	3266.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.170e-01;DB;DP=80;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.328;SOR=0.710;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,44:80:99:1113,0,943
chr2	220316579	rs4674399	C	T	6042.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=1.317;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1818,173,0
chr2	220327119	rs370801735	G	A	985.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DB;DP=77;ExcessHet=3.0103;FS=2.104;MQ=60.00;MQRankSum=0.00;QD=12.80;ReadPosRankSum=-5.520e-01;SOR=1.039;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,36:77:99:994,0,1063
chr2	220327262	rs34553082	C	T	662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DB;DP=8;ExcessHet=6.9897;FS=7.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=0.098;SOR=2.376;VQSLOD=18.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:129,0,132
chr2	220330532	rs7590434	T	C	963.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=-2.470e-01;SOR=1.259;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,13:18:99:482,0,147
chr2	220330616	rs4399716	C	T	2897.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.933e+00;DB;DP=54;ExcessHet=6.9897;FS=1.543;MQ=60.00;MQRankSum=0.00;QD=18.82;ReadPosRankSum=0.412;SOR=0.400;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,33:54:99:987,0,694
chr2	220330642	.	TGTGCGCGC	T	4301.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DP=95;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.15;ReadPosRankSum=-3.330e-01;SOR=0.664;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,50:95:99:1632,0,1715
chr2	220330646	rs1976618	C	*,T	3482.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.34;DB;DP=91;ExcessHet=3.0103;FS=8.849;MQ=60.00;MQRankSum=0.00;QD=15.69;ReadPosRankSum=-4.750e-01;SOR=3.300;VQSLOD=12.37;culprit=MQ	GT:AD:DP:GQ:PL	1/2:4,50,37:91:99:3199,1385,1374,1723,0,2182
chr2	220330657	rs68012340	GTGCA	G	4623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.840e-01;DB;DP=97;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=-1.084e+00;SOR=0.656;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,50:97:99:2166,0,1611
chr2	220330661	rs1976617	A	*,G	4731.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=18.13;SOR=2.685;VQSLOD=14.86;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,61,43:104:99:4899,1819,1606,2528,0,2319
chr2	220330724	rs1567488	C	T	7805.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DB;DP=271;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=2.10;SOR=0.701;VQSLOD=5.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:154,117:271:99:2889,0,3930
chr2	220330804	rs1567487	T	C	9298.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DB;DP=313;ExcessHet=6.9897;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-7.000e-03;SOR=0.739;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:169,144:313:99:3335,0,4054
chr2	220330976	rs4369848	C	A	1896.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.959e+00;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=0.00;SOR=0.856;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:661,0,516
chr2	220333950	rs10167209	T	C	22193.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.93;SOR=1.051;VQSLOD=4.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,219:219:99:7031,658,0
chr2	220337196	rs1039897	G	A	1098.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=16;ExcessHet=3.9794;FS=1.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=1.36;SOR=0.460;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:617,48,0
chr2	220341935	rs201853159	A	AG	2343.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.372;DB;DP=35;ExcessHet=3.9794;FS=3.283;MQ=60.00;MQRankSum=0.00;QD=30.05;ReadPosRankSum=-1.134e+00;SOR=1.432;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,35:35:99:1|1:220341935_A_AG:1602,108,0:220341935
chr2	220341938	.	C	CGGGGCCTGGTACAGCGGCT	3291.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.581;DP=36;ExcessHet=3.9794;FS=6.343;MQ=60.00;MQRankSum=0.00;QD=28.96;ReadPosRankSum=-1.185e+00;SOR=1.997;VQSLOD=4.61;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:220341935_A_AG:2172,149,0:220341935
chr2	220345117	rs4674403	T	G	613.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=2.303;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:220345117_T_G:630,42,0:220345117
chr2	220345118	rs4674404	T	C	613.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=2.303;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:220345117_T_G:630,42,0:220345117
chr2	220346596	rs3731906	C	T	745.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.555e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=-9.900e-01;SOR=0.602;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:640,48,0
chr2	220350452	rs1810144	C	T	239.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:184,15,0
chr2	220350502	rs10167337	A	G	239.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=2.303;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:251,18,0
chr2	220350587	rs1397429	C	T	117.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.36;SOR=1.609;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
chr2	220353104	rs875097	A	G	6172.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.93;DB;DP=119;ExcessHet=1.5490;FS=2.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=1.87;SOR=0.504;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:4441,358,0
chr2	220356806	rs907146	C	T	14545.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.04;ReadPosRankSum=0.669;SOR=0.994;VQSLOD=6.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4501,417,0
chr2	220361265	rs2385541	A	G	1405.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=3.086;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:552,42,0
chr2	220361344	rs2385540	G	A	786.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.75;SOR=1.022;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:336,24,0
chr2	220361435	rs1567489	C	G	3122.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=5.161;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:890,72,0
chr2	220362899	rs2029251	C	G	36983.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=366;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.90;ReadPosRankSum=-4.030e-01;SOR=0.539;VQSLOD=6.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,366:366:99:11388,1098,0
chr2	220366953	rs2385539	G	C	1864.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=36;ExcessHet=1.5490;FS=8.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=0.280;SOR=2.252;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1436,108,0
chr2	220371181	rs10932808	T	A	13724.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=1.637;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4210,419,0
chr2	220379560	rs3731909	C	G	14659.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.600e-02;DB;DP=370;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=1.56;SOR=0.723;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,370:370:99:10704,1109,0
chr2	220380125	rs1872858	G	A	1946.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=0.615;SOR=1.085;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1540,117,0
chr2	220397811	rs6731344	T	C	5084.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=3.465;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1535,144,0
chr2	220399951	rs2276643	A	G	1193.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124e+00;DB;DP=116;ExcessHet=3.0103;FS=1.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=1.55;SOR=0.659;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,54:116:99:1202,0,1510
chr2	220400064	rs60623120	T	G	922.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=59;ExcessHet=3.0103;FS=1.030;MQ=59.86;MQRankSum=-1.092e+00;QD=15.63;ReadPosRankSum=-1.631e+00;SOR=0.483;VQSLOD=0.313;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,26:59:99:0|1:220400061_GT_G:931,0,1345:220400061
chr2	220400158	.	T	A	141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.08;MQRankSum=-8.420e-01;QD=14.13;ReadPosRankSum=0.405;SOR=0.412;VQSLOD=-6.513e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:220400158_T_A:150,0,379:220400158
chr2	220400159	rs150579390	TTGTG	T	141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.08;MQRankSum=-8.420e-01;QD=14.13;ReadPosRankSum=0.405;SOR=0.412;VQSLOD=0.472;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:220400158_T_A:150,0,379:220400158
chr2	220401663	rs72969461	C	T	500.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;DB;DP=46;ExcessHet=3.0103;FS=9.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-4.390e-01;SOR=0.130;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:509,0,848
chr2	220401732	rs3770237	G	A	1024.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571e+00;DB;DP=96;ExcessHet=3.0103;FS=5.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-2.080e-01;SOR=1.378;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,40:96:99:1033,0,1597
chr2	220401751	rs2385538	G	A	1332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=114;ExcessHet=3.0103;FS=6.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-2.140e-01;SOR=1.349;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,51:114:99:1341,0,1703
chr2	220402624	rs11689270	G	T	4149.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=40;ExcessHet=3.0103;FS=5.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=-1.008e+00;SOR=0.264;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:765,0,465
chr2	220402665	rs6436153	C	A	829.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=61;ExcessHet=3.0103;FS=18.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.097e+00;SOR=2.870;VQSLOD=11.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:838,0,1296
chr2	220402671	rs11689281	G	T	8284.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.720e-01;DB;DP=64;ExcessHet=3.0103;FS=11.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.13;ReadPosRankSum=0.787;SOR=0.175;VQSLOD=15.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,34:64:99:0|1:220402671_G_T:1290,0,1136:220402671
chr2	220402680	rs11695248	T	C	8535.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=68;ExcessHet=3.0103;FS=7.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=0.437;SOR=0.277;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,37:68:99:0|1:220402671_G_T:1410,0,1136:220402671
chr2	220404381	rs1976616	A	G	13502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=0.986;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4486,420,0
chr2	220404648	rs1043833	C	T	1223.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.510e-01;DB;DP=122;ExcessHet=3.0103;FS=1.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-7.220e-01;SOR=0.521;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,51:122:99:1232,0,1871
chr2	220404726	rs1043832	G	A	1080.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=88;ExcessHet=3.0103;FS=4.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.319;SOR=1.071;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,39:88:99:1089,0,1306
chr2	220405230	rs6436154	G	A	3236.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=242;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-3.380e-01;SOR=0.667;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:122,120:242:99:3245,0,3180
chr2	220405321	rs6436155	T	C	17336.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=1.032;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5404,510,0
chr2	220406088	rs34272434	T	C	232.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=0.709;SOR=1.022;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:241,0,163
chr2	220406239	rs13004994	T	G	6324.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=-5.700e-02;SOR=0.768;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,41:76:99:1085,0,986
chr2	220406722	rs3731912	T	C	20627.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=212;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=0.875;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,212:212:99:6848,636,0
chr2	220406944	rs7581251	G	A	4789.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.42;SOR=1.188;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1175,95,0
chr2	220407918	rs10932810	G	T	305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414e+00;DB;DP=31;ExcessHet=3.0103;FS=1.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-1.489e+00;SOR=0.303;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:314,0,461
chr2	220408699	rs907145	T	G	592.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.97;SOR=5.421;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr2	220409701	rs10932811	C	T	812.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.233e+00;DB;DP=76;ExcessHet=3.0103;FS=0.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=1.01;SOR=0.559;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,33:76:99:821,0,1216
chr2	220412256	rs8179770	T	C	11280.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=0.884;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3323,327,0
chr2	220413658	rs56198734	CA	C	2552.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.05;ReadPosRankSum=0.801;SOR=1.087;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,12:23:99:381,0,341
chr2	220413661	rs12996466	C	T	4164.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=5.200;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1036,78,0
chr2	220414016	rs6436156	C	T	21941.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=236;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=1.289;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,236:236:99:1|1:220414016_C_T:8629,708,0:220414016
chr2	220414019	rs13023533	T	C	2421.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.552e+00;DB;DP=235;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.307;SOR=0.690;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:127,108:235:99:0|1:220414016_C_T:2430,0,3123:220414016
chr2	220415595	rs146790993	GGA	G	1095.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=81;ExcessHet=3.0103;FS=1.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.646;SOR=0.973;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,31:81:99:1104,0,1898
chr2	220415646	rs1043582	T	C	527.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=47;ExcessHet=3.0103;FS=5.020;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-2.190e+00;SOR=1.765;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,18:47:99:536,0,741
chr2	220415717	rs3731918	G	A	2513.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DB;DP=18;ExcessHet=3.0103;FS=4.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.44;ReadPosRankSum=-1.813e+00;SOR=0.209;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:317,0,225
chr2	220415752	rs6745782	C	T	1920.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.70;SOR=2.448;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:535,42,0
chr2	220415834	rs6717394	A	G	964.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=0.976;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:252,24,0
chr2	220416164	rs6761575	T	C	1383.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=1.179;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:575,48,0
chr2	220416570	rs4672931	C	T	8225.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.71;SOR=1.285;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2974,269,0
chr2	220416591	rs4672932	C	T	7296.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=1.033;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2544,201,0
chr2	220416803	rs4672933	A	T	22752.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=260;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=-7.030e-01;SOR=0.330;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,260:260:99:7899,780,0
chr2	220416942	rs34490902	G	C	4154.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670e-01;DB;DP=199;ExcessHet=3.9794;FS=0.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.089;SOR=0.737;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,98:199:99:2261,0,2508
chr2	220416967	rs4672934	C	T	8531.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DB;DP=142;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=0.531;SOR=0.709;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,71:142:99:1714,0,1683
chr2	220417228	rs60549465	G	T	2419.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.870e-01;DB;DP=94;ExcessHet=3.9794;FS=1.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=5.000e-03;SOR=0.814;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,54:94:99:1405,0,966
chr2	220417266	rs59332477	C	T	1803.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.010e-01;DB;DP=139;ExcessHet=3.0103;FS=0.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.064;SOR=0.597;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,78:139:99:1812,0,1356
chr2	220417911	rs6436157	T	C	418.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.74;SOR=3.258;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	220419236	rs10932813	T	C	14477.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=0.866;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4692,453,0
chr2	220419339	rs10932814	T	C	16734.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=0.712;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4741,453,0
chr2	220420553	rs1056908	C	T	1406.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.93;ReadPosRankSum=1.11;SOR=2.352;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:172,0,166
chr2	220420956	rs10932816	A	G	8580.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=0.917;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3189,315,0
chr2	220421417	rs1983210	C	G	19599.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.138e+00;DB;DP=215;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=0.884;SOR=0.738;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,215:215:99:6927,646,0
chr2	220421456	rs1983211	C	A	2128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=133;ExcessHet=3.0103;FS=2.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=0.152;SOR=0.454;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,74:133:99:2137,0,1515
chr2	220421639	rs12476090	A	G	797.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=6.091;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr2	220421686	rs4674411	A	T	371.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.01;SOR=4.615;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr2	220422029	rs55873563	G	A	1022.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812e+00;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=1.08;SOR=0.693;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,43:96:99:1031,0,1475
chr2	220422400	rs2278200	C	G	1513.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=37;ExcessHet=3.9794;FS=13.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=1.41;SOR=1.952;VQSLOD=13.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:608,0,586
chr2	220422774	rs2278201	A	G	4740.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.340e-01;DB;DP=208;ExcessHet=3.9794;FS=0.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-1.230e-01;SOR=0.718;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,110:208:99:2801,0,2487
chr2	220423367	rs13401387	C	T	209.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-5.240e-01;SOR=2.179;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,119
chr2	220423704	rs10208534	A	G	565.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.77;DB;DP=23;ExcessHet=3.9794;FS=7.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.526;SOR=1.981;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,6:23:99:195,0,427
chr2	220423769	rs67138719	C	G	288.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.332e+00;DB;DP=30;ExcessHet=3.0103;FS=4.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-7.110e-01;SOR=1.765;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:297,0,668
chr2	220427996	rs11904583	T	C	7619.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.23;SOR=8.211;VQSLOD=24.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2025,147,0
chr2	220428381	rs2303543	A	T	20504.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=277;ExcessHet=3.0103;FS=0.671;MQ=60.00;MQRankSum=-1.096e+00;POSITIVE_TRAIN_SITE;QD=24.50;ReadPosRankSum=0.472;SOR=0.760;VQSLOD=1.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,277:277:99:8790,830,0
chr2	220430203	rs1039898	C	T	13206.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.806e+00;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=1.19;SOR=0.697;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4633,404,0
chr2	220431919	rs4674412	A	G	4419.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=1.115;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1107,78,0
chr2	220432709	rs2292360	A	T	20010.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.400e-02;DB;DP=306;ExcessHet=3.0103;FS=4.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.575;SOR=0.999;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,306:306:99:8995,902,0
chr2	220435034	rs10180675	A	G	50025.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=670;ExcessHet=3.0103;FS=0.690;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.78;ReadPosRankSum=1.24;SOR=0.537;VQSLOD=6.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,670:670:99:20703,2009,0
chr2	220435375	rs1061399	G	A	16276.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.063e+00;DB;DP=191;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.93;ReadPosRankSum=-2.303e+00;SOR=0.684;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,191:191:99:6294,570,0
chr2	220462481	rs146242946	G	A	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=24;ExcessHet=3.0103;FS=3.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=1.38;SOR=0.144;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:465,0,305
chr2	220462640	rs681747	G	T	15907.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=1.243;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4534,422,0
chr2	220466199	rs620698	G	T	12327.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=0.928;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3512,333,0
chr2	220466344	rs11405075	G	GT	4791.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210e-01;DB;DP=105;ExcessHet=6.9897;FS=0.592;MQ=59.98;MQRankSum=-4.150e-01;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=0.693;SOR=0.792;VQSLOD=2.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,74:105:99:1711,0,121
chr2	220471116	rs633200	C	G	17269.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.480e-01;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=1.62;SOR=0.914;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:159:99:4860,470,0
chr2	220472596	rs630063	G	T	1561.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=2.833;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:714,69,0
chr2	220473653	rs675291	C	T	1361.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.27;SOR=2.303;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:359,27,0
chr2	220474466	rs11365689	GT	G	385.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.800e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.78;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-3.850e-01;SOR=2.670;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,9:10:5:182,5,0
chr2	220476138	rs676903	G	A	927.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=6.358;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr2	220476443	rs627530	C	T	24114.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=305;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=1.003;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,305:305:99:8644,905,0
chr2	220476645	rs581547	T	C	16481.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=1.071;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5209,484,0
chr2	220479055	rs2305052	C	A	1188.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.886e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.250;SOR=0.738;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,4:19:99:106,0,553
chr2	220479312	rs624773	T	C	17146.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=0.785;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,194:194:99:5702,581,0
chr2	220480246	rs111415476	C	CAGAG	2026.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.64;SOR=0.976;VQSLOD=5.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:540,36,0
chr2	220480639	rs640807	T	C	5130.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.75;SOR=0.988;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1733,162,0
chr2	220480693	rs665845	G	C	5793.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.207;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1947,168,0
chr2	220494118	rs597306	A	C	9401.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.48;SOR=1.028;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3697,306,0
chr2	220494604	rs3214742	AG	A	369.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.41;SOR=5.421;VQSLOD=6.18;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:173,18,0
chr2	220495167	rs612078	A	C	2925.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.92;SOR=3.611;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:996,75,0
chr2	220500423	rs589767	A	G	11099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=0.785;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,87:87:99:1|1:220500423_A_G:3950,268,0:220500423
chr2	220500426	rs639214	A	G	11068.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.91;SOR=0.751;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,88:88:99:1|1:220500423_A_G:3915,265,0:220500423
chr2	220502043	rs623851	T	C	564.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.27;SOR=5.549;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:96,9,0
chr2	220502137	rs621515	C	T	2621.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.304;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.14;ReadPosRankSum=-7.250e-01;SOR=1.358;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1070,84,0
chr2	220502367	rs635311	A	C	17871.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.13;DB;DP=249;ExcessHet=3.0103;FS=0.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=1.18;SOR=0.608;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,249:249:99:7286,747,0
chr2	220505265	rs684428	T	C	27009.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=295;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=0.537;SOR=0.401;VQSLOD=6.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,293:295:99:9083,850,0
chr2	220586231	rs9288551	C	G	264.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=0.674;SOR=1.270;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:65:199,0,65
chr2	220770935	rs10932831	A	T	1030.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.27;SOR=6.439;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr2	220771223	rs4674470	C	T	9926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=0.815;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2972,282,0
chr2	220771290	rs4674471	G	A	8525.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=1.139;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2298,213,0
chr2	220771310	rs4674472	A	G	8291.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.060e-01;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.30;ReadPosRankSum=0.563;SOR=0.401;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2528,237,0
chr2	220771378	rs4674473	A	G	6956.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.227;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2112,216,0
chr2	222290829	rs35860178	C	T	1497.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;DB;DP=113;ExcessHet=3.0103;FS=4.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.230;SOR=0.514;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,58:113:99:1506,0,1377
chr2	222290902	rs2303901	A	G	1191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.956e+00;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=1.05;SOR=0.693;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1200,0,1345
chr2	222301357	rs3213844	T	C	3710.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.79;DB;DP=56;ExcessHet=3.9794;FS=5.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.33;ReadPosRankSum=-1.010e-01;SOR=1.166;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:811,0,741
chr2	222307310	rs2288629	C	A	1409.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=13;ExcessHet=3.0103;FS=3.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=-6.920e-01;SOR=2.494;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:210,0,212
chr2	222320427	rs2288627	G	A	9219.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=109;ExcessHet=3.0103;FS=0.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=-3.000e-01;SOR=0.616;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,54:109:99:1323,0,1401
chr2	222321225	rs6718949	C	T	4077.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.266e+00;DB;DP=40;ExcessHet=3.0103;FS=2.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.43;ReadPosRankSum=-7.000e-02;SOR=0.327;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,25:40:99:725,0,468
chr2	222367483	rs61623527	G	A	2679.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342e+00;DB;DP=29;ExcessHet=3.9794;FS=2.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-2.200e-02;SOR=1.189;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:403,0,514
chr2	222431671	rs200402394	A	G	52.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=49.83;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=-2.717e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:25:0|1:222431671_A_G:61,0,25:222431671
chr2	222431676	rs7589383	G	A	50.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=49.83;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=-2.729e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:48:0|1:222431671_A_G:58,0,48:222431671
chr2	222431689	rs7589393	G	A	601.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=55.71;MQRankSum=-1.645e+00;QD=30.45;ReadPosRankSum=1.65;SOR=1.230;VQSLOD=-1.281e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:55:0|1:222431671_A_G:55,0,86:222431671
chr2	222433720	rs2680844	A	G	364.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=4.615;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	222434898	rs11687492	T	C	868.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=29;ExcessHet=3.9794;FS=2.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.849;SOR=1.071;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:245,0,569
chr2	222435035	rs200647532	TCC	T,TC	600.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.63;SOR=5.994;VQSLOD=4.17;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,5,2:7:56:260,56,69,210,0,204
chr2	222435048	rs2710504	A	G	306.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.11;ReadPosRankSum=0.487;SOR=0.602;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:69:204,0,69
chr2	222437136	rs11381414	A	AG	1303.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=5.784;VQSLOD=7.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:328,27,0
chr2	222437234	rs11381413	C	CG	199.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=3.912;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr2	223066237	rs13014735	G	A	1692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.530;DB;DP=66;ExcessHet=3.9794;FS=1.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=1.44;SOR=0.521;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,39:66:99:849,0,721
chr2	223066919	rs2855268	C	G	658.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.934e+00;DB;DP=36;ExcessHet=3.0103;FS=2.037;MQ=59.66;MQRankSum=1.24;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=0.835;SOR=0.337;VQSLOD=0.995;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,21:36:99:667,0,507
chr2	223084833	rs13022712	C	T	694.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.320e-01;DB;DP=23;ExcessHet=3.9794;FS=10.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.026;SOR=0.037;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:264,0,518
chr2	223096709	rs1965791	G	C	684.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.24;ReadPosRankSum=1.04;SOR=3.716;VQSLOD=16.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:286,21,0
chr2	223158652	rs10712898	GT	G	655.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=1.493;VQSLOD=5.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:222,18,0
chr2	223159119	rs2303948	C	A	2614.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.070e-01;DB;DP=51;ExcessHet=1.5490;FS=5.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.625;SOR=1.445;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,28:51:99:755,0,613
chr2	223161624	rs12694578	A	G	2891.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=34;ExcessHet=3.0103;FS=5.036;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=-1.810e+00;SOR=1.658;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:537,0,503
chr2	223161889	rs12623857	A	G	8134.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=1.121;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2779,275,0
chr2	223162024	rs6754024	T	G	5294.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=0.874;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2043,195,0
chr2	223339154	rs10208082	C	T	805.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.24;ReadPosRankSum=-5.450e-01;SOR=3.014;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:136,0,130
chr2	223339533	rs199525854	CTT	C	903.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=-6.370e-01;SOR=2.560;VQSLOD=6.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:14:99:177,0,103
chr2	223339582	rs735678	C	A	240.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.189;SOR=1.609;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,109
chr2	223423362	rs4674664	A	G	10970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=33.96;SOR=0.763;VQSLOD=4.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2925,263,0
chr2	223436402	rs3768973	C	T	945.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=0.967;SOR=5.058;VQSLOD=13.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:360,27,0
chr2	223436428	rs3211018	T	C	516.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.865e+00;DB;DP=11;ExcessHet=1.5490;FS=2.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=-1.317e+00;SOR=0.287;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:410,33,0
chr2	223436607	rs7185	C	T	6660.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=0.693;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2408,230,0
chr2	223489249	rs3214770	GT	G	2174.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.860e-01;DB;DP=45;ExcessHet=1.5490;FS=9.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=1.09;SOR=0.163;VQSLOD=4.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,44:45:99:1526,100,0
chr2	223489293	rs2290031	C	T	2158.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.850e-01;DB;DP=35;ExcessHet=1.5490;FS=9.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=0.843;SOR=0.840;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1449,105,0
chr2	223493435	rs2019357	G	A	5298.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.781e+00;DB;DP=55;ExcessHet=3.0103;FS=0.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=1.04;SOR=0.613;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1612,165,0
chr2	223496076	rs2894471	G	A	322.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.21;ReadPosRankSum=-9.670e-01;SOR=3.258;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr2	223505547	.	T	C	200.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.52;ReadPosRankSum=0.651;SOR=1.085;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:87:209,0,87
chr2	223520905	rs2166652	G	C	8937.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.806e+00;DB;DP=109;ExcessHet=3.0103;FS=10.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=1.41;SOR=0.311;VQSLOD=18.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3721,327,0
chr2	223520978	rs2044537	A	G	4297.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.224e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=-4.780e-01;SOR=0.703;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1617,135,0
chr2	223559089	rs1868024	T	C	1795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-5.500e-02;SOR=0.722;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:663,0,764
chr2	223559809	rs201526036	G	A	648.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=61;ExcessHet=3.0103;FS=1.045;MQ=60.00;MQRankSum=0.00;QD=10.63;ReadPosRankSum=0.291;SOR=0.530;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,27:61:99:657,0,891
chr2	223780921	rs12623448	G	A	650.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.727e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=-6.230e-01;SOR=1.179;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr2	223781017	rs60362808	AT	A	1112.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=35;ExcessHet=3.9794;FS=4.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.567;SOR=1.218;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,15:35:99:345,0,487
chr2	223781018	rs35780866	T	*,A	1707.73	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=35;ExcessHet=3.0103;FS=1.760;MQ=60.00;QD=12.20;SOR=0.946;VQSLOD=0.381;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,15,20:35:99:1083,525,487,421,0,352
chr2	223784068	rs2119157	T	G	280.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.16;ReadPosRankSum=0.319;SOR=3.056;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr2	223785504	rs6739824	T	C	3325.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.787e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.43;ReadPosRankSum=1.03;SOR=0.722;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:223785504_T_C:904,72,0:223785504
chr2	223785740	rs6756323	A	G	2781.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-02;DB;DP=116;ExcessHet=3.9794;FS=3.419;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=0.450;SOR=0.901;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,46:116:99:1095,0,1925
chr2	223785846	rs6728234	G	A	5205.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.082e+00;DB;DP=46;ExcessHet=3.0103;FS=1.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.27;ReadPosRankSum=-5.370e-01;SOR=1.005;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1763,138,0
chr2	223787272	rs112454943	G	GTCTC	391.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.72;SOR=4.615;VQSLOD=6.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	223787559	rs11891410	G	A	5128.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.840e-01;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.14;ReadPosRankSum=-1.029e+00;SOR=0.676;VQSLOD=6.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2047,200,0
chr2	223787691	rs10932978	G	A	1287.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.600e+00;DB;DP=12;ExcessHet=3.0103;FS=9.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.28;ReadPosRankSum=-5.010e-01;SOR=0.761;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:468,36,0
chr2	223789080	rs1866661	C	G	913.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.15;ReadPosRankSum=1.10;SOR=3.098;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:298,21,0
chr2	223789526	rs7590226	G	A	414.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.53;ReadPosRankSum=-9.670e-01;SOR=2.147;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:136,12,0
chr2	223793471	rs1550419	C	T	568.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059e+00;DB;DP=19;ExcessHet=3.9794;FS=1.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=1.10;SOR=0.465;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,6:19:99:0|1:223793471_C_T:122,0,430:223793471
chr2	223793480	rs1550420	C	T	1829.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.940e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=0.469;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:223793471_C_T:763,60,0:223793471
chr2	223793916	rs3768979	A	T	273.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.44;SOR=4.174;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr2	223798141	rs6726737	A	C	920.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.970e-01;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=2.31;SOR=1.022;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,5:22:99:127,0,553
chr2	223799207	rs935030	C	T	2585.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.19;SOR=5.105;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:809,60,0
chr2	223805974	rs1014280	A	G	1477.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.19;DB;DP=19;ExcessHet=1.5490;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.84;ReadPosRankSum=-7.360e-01;SOR=4.228;VQSLOD=13.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:375,0,265
chr2	223806189	rs35090606	C	CT	582.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.410e-01;DB;DP=66;ExcessHet=3.9794;FS=3.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.28;ReadPosRankSum=0.660;SOR=0.982;VQSLOD=6.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,12:66:99:155,0,1119
chr2	223806194	rs1550426	C	T	5329.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.441e+00;DB;DP=67;ExcessHet=3.0103;FS=4.168;MQ=59.95;MQRankSum=0.00;QD=24.79;ReadPosRankSum=-7.500e-01;SOR=0.762;VQSLOD=5.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:67:99:2391,217,0
chr2	223916682	rs13031825	G	A	567.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=-5.120e-01;SOR=0.877;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:576,0,234
chr2	223917243	rs34645330	TA	T	689.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.74;ReadPosRankSum=-5.980e-01;SOR=0.491;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:66:66,0,66
chr2	223917244	rs72617126	A	*,T	116.04	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=4.83;SOR=0.693;VQSLOD=-6.210e-02;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,3,3:6:66:212,84,66,82,0,66
chr2	223917289	rs58478755	T	TA	510.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=2.917;MQ=59.60;MQRankSum=0.00;QD=21.26;ReadPosRankSum=-4.310e-01;SOR=0.197;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:31:62,0,31
chr2	223917812	rs10201907	T	C	15263.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=1.020;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4973,447,0
chr2	223918019	rs17221840	G	A	1667.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=114;ExcessHet=3.0103;FS=4.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-2.430e-01;SOR=1.152;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,65:114:99:1676,0,1209
chr2	223918080	rs10189762	C	G	7216.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.103;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1906,186,0
chr2	223918363	rs3795884	T	C	118.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=2.833;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr2	224629876	rs10644138	C	CCATCAT,CCATCATCAT	2810.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.050e-01;DB;DP=26;ExcessHet=3.0103;FS=5.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.90;ReadPosRankSum=1.32;SOR=1.390;VQSLOD=6.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,15,11:26:99:1155,457,399,613,0,566
chr2	224634763	rs627678	G	A	648.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=5.670;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr2	224640379	rs7565238	A	G	366.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=3.258;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
chr2	224743410	rs149448078	G	A	568.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.05;ReadPosRankSum=-1.078e+00;SOR=0.745;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,27:94:99:577,0,1522
chr2	224743591	rs602675	C	T	3506.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.00;SOR=3.732;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1287,107,0
chr2	224743652	rs547234	A	G	1518.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.63;SOR=3.145;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:692,54,0
chr2	224744701	rs516849	A	G	2005.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.874;DB;DP=23;ExcessHet=3.9794;FS=1.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=1.33;SOR=0.958;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:348,0,282
chr2	224758906	rs625150	C	T	8851.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=2.036;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3147,294,0
chr2	224760494	rs597349	G	A	4987.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=34.12;SOR=1.712;VQSLOD=5.33;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1332,108,0
chr2	224760575	rs552854	A	G	2455.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=3.578;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:719,63,0
chr2	224763816	rs530065	C	T	5329.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=1.487;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1416,138,0
chr2	224765755	rs5839028	TA	T	1941.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.74;SOR=2.899;VQSLOD=6.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:676,72,0
chr2	224765894	rs604990	G	A	8687.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.94;SOR=1.011;VQSLOD=19.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2678,243,0
chr2	224765956	rs2272317	C	T	3012.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=110;ExcessHet=3.9794;FS=2.310;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-2.420e-01;SOR=0.881;VQSLOD=6.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,63:110:99:1669,0,1145
chr2	224766250	rs678370	G	C	555.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=5.549;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr2	224770389	rs677024	G	A	1308.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.88;SOR=6.994;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:329,24,0
chr2	224770780	rs622896	C	T	2518.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=3.816;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:577,48,0
chr2	224777094	rs541712	T	C	5991.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483e+00;DB;DP=79;ExcessHet=3.9794;FS=1.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-1.149e+00;SOR=0.570;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,39:79:99:0|1:224777094_T_C:1367,0,3211:224777094
chr2	224777105	rs113054269	G	GTGAT	5750.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750e-01;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=-9.170e-01;SOR=0.730;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,35:72:99:0|1:224777094_T_C:1316,0,3159:224777094
chr2	224822043	rs3738960	C	G	2863.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.543e+00;DB;DP=57;ExcessHet=6.9897;FS=1.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-2.600e-01;SOR=0.513;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,34:57:99:943,0,735
chr2	224824617	rs11546405	A	G	861.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.968e+00;DB;DP=57;ExcessHet=3.0103;FS=5.372;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-1.988e+00;SOR=0.280;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,31:57:99:870,0,776
chr2	224831891	rs6707243	G	A	306.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=4.407;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr2	224840953	rs13017726	C	T	138.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=17.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:147,0,60
chr2	224842034	rs35742624	C	T	69.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.96;SOR=2.303;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	224842150	rs7597833	T	C	647.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.830e-01;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=1.09;SOR=0.804;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:226,0,254
chr2	224844864	rs33916072	A	G	236.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:99,0,67
chr2	224844919	rs729631	C	G	469.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=1.80;SOR=0.990;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:153,0,100
chr2	224862700	rs36034130	C	A	349.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.846e+00;DB;DP=44;ExcessHet=3.0103;FS=3.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.94;ReadPosRankSum=1.34;SOR=0.193;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,15:44:99:358,0,1004
chr2	224866387	rs12138	G	A	1198.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.628;SOR=0.790;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,46:89:99:1207,0,985
chr2	224866576	rs12436	C	A	3160.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=139;ExcessHet=3.9794;FS=7.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.620;SOR=1.124;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,58:139:99:1531,0,1878
chr2	224866694	rs10706128	CT	C	372.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-2.140e-01;SOR=1.154;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:94:0|1:224866694_CT_C:94,0,374:224866694
chr2	224866712	rs10545713	CAGAT	C	372.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-3.690e-01;SOR=1.127;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:94:0|1:224866694_CT_C:94,0,374:224866694
chr2	225244102	rs16865902	C	T	138.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=3.258;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:155,12,0
chr2	225244116	rs16865904	T	C	178.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=3.611;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr2	225244235	rs16865905	A	C	696.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=0.963;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:713,69,0
chr2	225244888	rs3738954	A	G	1894.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=0.986;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1911,180,0
chr2	225244923	rs3738953	A	G	2412.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=59;ExcessHet=1.5490;FS=0.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=-1.151e+00;SOR=0.710;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1852,177,0
chr2	225245161	rs7604287	T	C	157.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.68;SOR=3.258;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr2	225265645	rs13010329	G	A	563.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.357;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.646;SOR=0.407;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:298,0,136
chr2	225362653	rs113318501	T	TTG	506.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=29;ExcessHet=3.0103;FS=3.832;MQ=60.00;MQRankSum=0.00;QD=17.46;ReadPosRankSum=-1.990e-01;SOR=2.303;VQSLOD=5.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,17:29:99:515,0,331
chr2	225368321	rs3738951	A	G	2514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=67;ExcessHet=3.9794;FS=1.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=0.861;SOR=0.527;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,30:67:99:855,0,1040
chr2	225375894	rs10498162	G	A	90.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-8.420e-01;SOR=0.495;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:99,0,103
chr2	225422239	rs35741506	AT	A	112.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=3.9794;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=1.65;SOR=0.105;VQSLOD=6.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,63
chr2	225434445	rs10498163	A	G	938.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=29;ExcessHet=3.9794;FS=1.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.737;SOR=1.004;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:393,0,320
chr2	225630233	rs1045654	C	T	281.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.54;SOR=4.174;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr2	225630257	rs138508480	G	GA	266.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.66;SOR=4.804;VQSLOD=5.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:172,18,0
chr2	225630435	rs1045653	C	T	5132.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=1.445;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2089,198,0
chr2	225633812	rs3754624	T	C	2537.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.56;SOR=2.439;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1208,108,0
chr2	225661982	rs11301276	AT	A	205.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.15;ReadPosRankSum=0.319;SOR=2.670;VQSLOD=4.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:111,12,0
chr2	225665074	rs1560859	G	A	1337.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.54;POSITIVE_TRAIN_SITE;QD=30.67;SOR=7.112;VQSLOD=7.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:318,24,0
chr2	225665193	rs6717059	C	T	187.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=3.611;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr2	225668717	rs10601183	ATG	A	914.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760e+00;DB;DP=40;ExcessHet=6.9897;FS=3.746;MQ=59.99;MQRankSum=0.00;QD=7.15;ReadPosRankSum=-7.800e-02;SOR=0.406;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,8:40:99:169,0,775
chr2	225670329	rs17271539	A	G	101.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.44;ReadPosRankSum=-2.071e+00;SOR=0.269;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:110,0,305
chr2	225688061	rs16866194	T	G	1889.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=4.407;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:523,39,0
chr2	225713926	.	T	C	61.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=53.70;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=-2.384e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:70:0|1:225713926_T_C:70,0,74:225713926
chr2	225713927	.	G	A	61.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=53.70;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=-2.385e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:70:0|1:225713926_T_C:70,0,74:225713926
chr2	225719781	rs145044043	G	GACACAC,GACACACACAC	4110.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.800e-01;DB;DP=29;ExcessHet=3.0103;FS=4.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.73;ReadPosRankSum=0.377;SOR=0.204;VQSLOD=6.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,14,9:29:99:1216,441,386,547,0,530
chr2	225781257	.	CAAA	C	60.08	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.04;SOR=2.303;VQSLOD=4.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
chr2	225781669	rs12987341	G	A	691.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.773e+00;DB;DP=21;ExcessHet=3.9794;FS=10.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=0.423;SOR=0.056;VQSLOD=18.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:279,0,325
chr2	225781670	rs13013616	T	C	1217.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.835e+00;DB;DP=20;ExcessHet=1.5490;FS=7.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.45;ReadPosRankSum=-3.197e+00;SOR=0.093;VQSLOD=18.92;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,20:20:63:811,63,0
chr2	225781748	rs62186352	G	A	58.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.674;SOR=0.446;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,104
chr2	225796112	rs17271574	G	A	291.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.210e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-4.620e-01;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr2	225796151	rs9808089	C	A	87.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-1.510e+00;SOR=1.911;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:96:96,0,138
chr2	225796458	rs35061287	ATC	A	85.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:13:94:94,0,404
chr2	225811581	rs13021295	T	A	1073.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DB;DP=40;ExcessHet=3.9794;FS=0.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.936;SOR=0.554;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:412,0,507
chr2	225848390	rs412120	T	A	240.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-9.080e-01;SOR=0.752;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,318
chr2	225848579	rs375205	T	C	8037.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=120;ExcessHet=3.0103;FS=1.060;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=-1.236e+00;SOR=0.808;VQSLOD=6.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3612,360,0
chr2	225875158	rs590233	A	C	1328.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243e+00;DB;DP=24;ExcessHet=3.9794;FS=3.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.333;SOR=0.323;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,6:24:99:164,0,583
chr2	225907150	rs397052	C	T	1047.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=51;ExcessHet=3.9794;FS=1.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.11;ReadPosRankSum=1.18;SOR=0.775;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:477,0,739
chr2	226447735	rs3828256	C	T	20395.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=274;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=-8.830e-01;SOR=0.706;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,272:274:99:8358,771,0
chr2	226447844	rs6436570	G	A	7561.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.37;SOR=5.773;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2423,181,0
chr2	226491770	rs3748993	A	C	8475.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=1.335;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2691,257,0
chr2	226516429	rs3791734	A	G	3941.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.61;DB;DP=34;ExcessHet=3.0103;FS=2.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.20;ReadPosRankSum=1.08;SOR=1.287;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1224,102,0
chr2	227771389	rs978909	T	G	330.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=-1.282e+00;SOR=0.784;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:127,0,108
chr2	227773354	rs74659334	G	GAC	648.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=12;ExcessHet=6.9897;FS=6.009;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.00;SOR=2.509;VQSLOD=5.72;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,4:12:99:118,0,273
chr2	227773466	rs3820928	T	C	3020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DB;DP=77;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-1.690e-01;SOR=0.671;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,30:77:99:712,0,1168
chr2	227779191	rs3820927	C	A	4556.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.820e-01;DB;DP=100;ExcessHet=6.9897;FS=4.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.886;SOR=0.939;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,53:100:99:1198,0,1093
chr2	227807202	rs6436641	G	T	642.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=21;ExcessHet=6.9897;FS=1.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.290;SOR=0.984;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:299,0,253
chr2	227872182	rs2228557	G	A	3899.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=74;ExcessHet=6.9897;FS=4.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-7.670e-01;SOR=0.486;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1072,0,910
chr2	227872617	rs9288618	A	G	606.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=0.231;SOR=0.588;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:151,0,166
chr2	227872995	rs2228555	T	C	9722.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=155;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=1.32;SOR=0.705;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,82:155:99:2178,0,1732
chr2	227873028	rs13419076	A	G	4664.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015e+00;DB;DP=104;ExcessHet=6.9897;FS=2.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-3.700e-01;SOR=0.846;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,58:104:99:1594,0,1229
chr2	227874957	rs4423583	C	T	3369.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e+00;DB;DP=74;ExcessHet=6.9897;FS=7.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-7.800e-02;SOR=1.151;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,36:74:99:998,0,1016
chr2	227877037	rs10188770	G	A	3145.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DB;DP=68;ExcessHet=6.9897;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=1.00;SOR=0.774;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,41:68:99:1107,0,687
chr2	227886773	rs3752895	A	G	5939.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=87;ExcessHet=3.9794;FS=2.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=1.76;SOR=0.881;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1230,0,1085
chr2	227886925	rs3752896	C	T	4134.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=87;ExcessHet=6.9897;FS=2.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=1.04;SOR=0.561;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,47:87:99:1175,0,981
chr2	227890283	rs2177596	A	T	387.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.67;ReadPosRankSum=0.524;SOR=3.442;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:155,0,25
chr2	227892428	rs10199655	T	C	238.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:59:59,0,106
chr2	227892619	rs2228556	C	T	2795.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=48;ExcessHet=3.9794;FS=1.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.932;SOR=0.819;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,19:48:99:488,0,742
chr2	227892720	rs2229813	C	T	2427.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450e-01;DB;DP=31;ExcessHet=3.9794;FS=2.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=-2.380e-01;SOR=0.515;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:382,0,332
chr2	227895125	rs1917127	A	G	2661.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.77;DB;DP=33;ExcessHet=3.9794;FS=2.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.797;SOR=1.070;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:393,0,552
chr2	227896652	rs13423714	C	G	3117.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=25;ExcessHet=3.9794;FS=6.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=0.117;SOR=1.818;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:592,0,179
chr2	227896886	rs2229812	C	T	8844.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=138;ExcessHet=3.9794;FS=0.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=-7.210e-01;SOR=0.646;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,68:138:99:1762,0,1814
chr2	227896976	rs10203363	C	T	5376.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364e+00;DB;DP=79;ExcessHet=3.9794;FS=6.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=1.64;SOR=1.115;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,37:79:99:919,0,1136
chr2	227897076	rs10179756	A	G	1883.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-1.403e+00;SOR=0.766;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,10:35:99:253,0,716
chr2	227906564	.	G	GAGAA	176.04	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=58.47;QD=29.34;SOR=3.912;VQSLOD=5.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:7:92,7,0
chr2	227912331	rs2272200	G	A	1935.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=32;ExcessHet=3.9794;FS=1.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=1.03;SOR=0.929;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:432,0,401
chr2	227914625	rs2272202	T	C	903.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=3.9794;FS=2.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=0.825;SOR=0.250;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:144,0,61
chr2	227914655	rs2272203	C	G	1217.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=12;ExcessHet=3.9794;FS=1.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=1.45;SOR=1.051;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:231,0,138
chr2	227914975	rs2251223	T	G	682.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=9;ExcessHet=3.9794;FS=2.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=-3.250e-01;SOR=1.893;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:136,0,143
chr2	227915601	rs2272204	G	T	966.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=0.984;SOR=1.666;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:100,0,193
chr2	227915832	rs1800517	G	A	5466.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=86;ExcessHet=3.9794;FS=0.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=1.64;SOR=0.644;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,40:86:99:1061,0,1157
chr2	227916039	rs2894626	T	C	1312.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DB;DP=11;ExcessHet=3.9794;FS=2.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.53;ReadPosRankSum=0.374;SOR=0.325;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:51:322,0,51
chr2	227917090	rs80243096	T	C	489.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=0.484;SOR=0.813;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,22:57:99:498,0,777
chr2	227917240	rs3769644	C	G	805.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.79;ReadPosRankSum=-2.530e-01;SOR=0.446;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:158,0,149
chr2	227920474	rs1320406	G	A	1626.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.29;ReadPosRankSum=-2.571e+00;SOR=1.536;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:379,0,313
chr2	227921977	rs4536647	A	G	730.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.80;ReadPosRankSum=-1.383e+00;SOR=1.101;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:77,0,64
chr2	227922015	rs4566357	A	G	944.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=14;ExcessHet=3.0103;FS=3.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=1.06;SOR=1.675;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:111,0,235
chr2	227922104	rs7567789	T	C	4363.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=44;ExcessHet=3.0103;FS=4.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=-6.710e-01;SOR=1.206;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,16:44:99:0|1:227922104_T_C:585,0,1477:227922104
chr2	227922109	rs7567796	T	A	4323.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DB;DP=46;ExcessHet=3.0103;FS=2.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.52;ReadPosRankSum=-1.219e+00;SOR=1.108;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,17:46:99:0|1:227922104_T_C:614,0,1508:227922104
chr2	227922454	rs2141829	G	A	3140.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=23;ExcessHet=3.0103;FS=1.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=-9.150e-01;SOR=1.371;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:262,0,397
chr2	227922470	rs2141828	T	C	1862.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=-1.980e-01;SOR=0.908;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:248,0,357
chr2	227922546	rs2177597	C	T	1225.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.33;ReadPosRankSum=0.967;SOR=5.549;VQSLOD=13.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:72,0,36
chr2	227923952	rs6436649	A	G	235.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.48;ReadPosRankSum=-1.383e+00;SOR=3.912;VQSLOD=13.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:77,0,37
chr2	227924817	.	GA	G	570.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.445;SOR=0.693;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:18:67:67,0,98
chr2	227925097	rs6436650	C	T	866.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=0.144;SOR=0.573;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:108,0,119
chr2	227927189	rs35717623	GT	G	542.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=0.864;SOR=0.788;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,17:31:99:342,0,261
chr2	227927536	rs3765192	C	T	742.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=0.405;SOR=2.303;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:133,0,197
chr2	227947053	rs10187611	C	G	127.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-2.720e-01;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:136,0,150
chr2	227954599	rs2229814	G	A	8683.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.269e+00;DB;DP=118;ExcessHet=3.0103;FS=0.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=-2.210e-01;SOR=0.741;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,63:118:99:1544,0,1480
chr2	227966148	rs16823202	C	T	1740.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.54;ReadPosRankSum=-4.640e-01;SOR=1.237;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:405,42,0
chr2	227966298	rs59443812	T	TA	3417.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.002e+00;DB;DP=57;ExcessHet=3.0103;FS=1.316;MQ=59.95;MQRankSum=-2.860e-01;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=-4.120e-01;SOR=0.593;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,55:57:99:1377,114,0
chr2	227967265	rs1574390	G	C	753.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=5.892;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:290,21,0
chr2	227967330	rs1574391	C	G	2003.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.49;SOR=3.486;VQSLOD=19.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:669,48,0
chr2	227967601	rs11274738	ACAATATTTCAGCAATAGGGAAAG	A	7628.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=1.527;VQSLOD=5.95;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2219,154,0
chr2	227967830	rs10707643	GA	G	5989.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.44;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=1.83;SOR=0.578;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,71:73:99:1930,183,0
chr2	227968553	rs7602059	A	C	3700.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.722;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.95;ReadPosRankSum=0.267;SOR=0.873;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,25:26:39:849,39,0
chr2	227973095	rs7600536	A	T	1438.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=3.611;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:608,48,0
chr2	227973410	rs55741079	C	A	2376.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.643e+00;DB;DP=24;ExcessHet=3.0103;FS=8.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.27;ReadPosRankSum=1.63;SOR=0.084;VQSLOD=18.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:842,72,0
chr2	227973623	rs12475686	A	G	4683.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=30.79;SOR=0.925;VQSLOD=4.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1034,93,0
chr2	227974113	rs6436654	A	G	3564.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.320e-01;DB;DP=40;ExcessHet=3.0103;FS=2.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=-3.810e-01;SOR=0.454;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1326,120,0
chr2	227974191	rs6436655	A	G	2649.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.352;DB;DP=28;ExcessHet=3.0103;FS=3.073;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.77;ReadPosRankSum=0.811;SOR=0.328;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:933,84,0
chr2	227986020	.	G	A	100.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.07;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:109,0,28
chr2	228012104	rs371902113	A	C	895.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452e+00;DB;DP=73;ExcessHet=3.0103;FS=6.255;MQ=60.00;MQRankSum=0.00;QD=12.26;ReadPosRankSum=-6.410e-01;SOR=0.257;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:904,0,919
chr2	228012435	rs12694712	T	C	363.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.14;ReadPosRankSum=-6.740e-01;SOR=1.292;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:124,12,0
chr2	228102723	rs13424243	G	C	2062.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=84;ExcessHet=3.9794;FS=0.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=1.97;SOR=0.755;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,41:84:99:963,0,983
chr2	228102752	rs1882435	C	A	849.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603e+00;DB;DP=70;ExcessHet=3.0103;FS=0.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.382;SOR=0.859;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,34:70:99:858,0,1000
chr2	228102921	rs11901256	G	T	307.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=1.47;SOR=0.976;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:42:0|1:228102921_G_T:165,0,42:228102921
chr2	228102922	rs11901257	G	A	307.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=1.47;SOR=0.976;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:42:0|1:228102921_G_T:165,0,42:228102921
chr2	228104760	rs7579991	C	T	9548.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=1.650;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2876,261,0
chr2	228109347	rs4675159	A	G	469.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=0.836;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr2	228109626	rs113428834	T	TG	5130.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.544;DB;DP=66;ExcessHet=3.0103;FS=2.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=-8.330e-01;SOR=0.488;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2434,198,0
chr2	228109784	rs6750210	C	T	1864.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.89;DB;DP=17;ExcessHet=3.0103;FS=1.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=1.18;SOR=1.451;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:608,51,0
chr2	228111195	.	C	T	64.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.43;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:73,0,31
chr2	228111435	rs10178458	T	C	7264.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.02;SOR=0.796;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2164,228,0
chr2	228111600	rs10168566	G	T	3946.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=2.687;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:228111600_G_T:1004,69,0:228111600
chr2	228111604	rs10168567	G	T	3721.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=2.948;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:228111600_G_T:945,63,0:228111600
chr2	228111651	rs10192026	A	G	1328.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.17;SOR=5.486;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:386,27,0
chr2	228111879	rs6737064	C	G	160.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.97;SOR=1.609;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	228112186	rs4321358	A	G	11668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=1.179;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3842,374,0
chr2	228113175	rs6436669	A	G	4676.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.40;ReadPosRankSum=-1.213e+00;SOR=1.220;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1531,141,0
chr2	228118403	rs12621551	T	G	4183.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.724;DB;DP=72;ExcessHet=3.9794;FS=6.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=0.047;SOR=0.346;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2269,216,0
chr2	228121101	rs55703767	G	T	2251.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=0.898;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2268,219,0
chr2	228128540	rs10205042	C	T	11764.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.105e+00;DB;DP=139;ExcessHet=3.0103;FS=2.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=-1.031e+00;SOR=1.034;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,72:139:99:1687,0,1639
chr2	228135426	rs73993878	G	A	150.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305e+00;DB;DP=18;ExcessHet=3.0103;FS=2.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=0.422;SOR=1.536;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:159,0,394
chr2	228141494	rs4305260	G	A	60.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:69,0,66
chr2	228142038	.	GAAA	G,GA	1000.57	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.14;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=2.093;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,5:13:79:340,121,124,110,0,79
chr2	228144706	rs6729152	G	T	2239.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.700e-01;DB;DP=25;ExcessHet=3.0103;FS=0.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=-1.150e-01;SOR=0.919;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:804,75,0
chr2	228145543	rs6436671	C	T	4739.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=55;ExcessHet=3.0103;FS=2.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=2.18;SOR=0.925;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1814,165,0
chr2	228149107	rs6436672	A	G	1728.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.975e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=0.849;SOR=1.032;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:644,54,0
chr2	228154095	rs7593281	C	T	863.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.02;ReadPosRankSum=0.524;SOR=3.442;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:299,21,0
chr2	228154137	rs7566682	A	G	464.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.87;ReadPosRankSum=0.00;SOR=3.767;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr2	228154156	rs7593299	C	A	336.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.61;ReadPosRankSum=0.967;SOR=3.258;VQSLOD=18.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr2	228158418	rs7569636	T	C	7459.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.848;DB;DP=101;ExcessHet=3.0103;FS=1.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.29;ReadPosRankSum=0.199;SOR=0.850;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3015,303,0
chr2	228158648	rs7608999	G	C	2474.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.40;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.33;ReadPosRankSum=-4.000e-02;SOR=0.746;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:837,60,0
chr2	228159063	rs6436675	T	C	2787.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=30.63;SOR=1.770;VQSLOD=5.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:709,75,0
chr2	228159641	rs4675163	C	T	610.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421e+00;DB;DP=41;ExcessHet=3.0103;FS=3.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-2.476e+00;SOR=0.307;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:619,0,522
chr2	228159660	rs202047534	GTT	G,GT	2587.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=-1.630e-01;QD=19.31;ReadPosRankSum=0.027;SOR=0.699;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,30,20:53:99:1345,348,362,702,0,629
chr2	228162770	rs74266862	A	G	397.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=22;ExcessHet=3.0103;FS=11.083;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=1.22;SOR=3.767;VQSLOD=12.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:406,0,215
chr2	228162789	.	C	A	334.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DP=16;ExcessHet=3.0103;FS=3.590;MQ=60.00;MQRankSum=0.00;QD=20.89;ReadPosRankSum=0.775;SOR=2.215;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:343,0,181
chr2	228162838	rs7606813	C	T	887.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.94;DB;DP=8;ExcessHet=3.0103;FS=5.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=1.04;SOR=3.383;VQSLOD=16.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:324,24,0
chr2	228174227	rs79118782	G	A	45.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.53;ReadPosRankSum=1.22;SOR=0.105;VQSLOD=22.23;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:54:54,0,272
chr2	228175311	rs10432551	C	T	1261.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.820e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=-8.610e-01;SOR=0.544;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:524,39,0
chr2	228176357	rs4455148	T	G	209.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.99;SOR=2.303;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr2	228194570	rs6706656	G	A	11383.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.68;SOR=0.925;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3710,360,0
chr2	228194639	rs11384091	T	TA	4810.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=-1.130e-01;SOR=0.627;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1565,176,0
chr2	228195763	rs77017294	C	T	61.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:70,0,36
chr2	228197368	rs4500938	A	G	4548.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=1.626;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1669,162,0
chr2	228197488	rs4444514	A	G	947.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.74;SOR=6.439;VQSLOD=23.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:236,18,0
chr2	228204807	rs139635640	G	GGT	113.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.19;ReadPosRankSum=1.07;SOR=0.223;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:88:122,0,88
chr2	228204929	rs4420693	C	T	2387.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.63;SOR=1.545;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:50:580,50,0
chr2	228204982	rs4442987	C	T	3220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=1.145;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:886,84,0
chr2	228207625	rs6738078	G	A	4025.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=36;ExcessHet=3.0103;FS=0.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.15;ReadPosRankSum=0.181;SOR=0.960;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,13:36:99:358,0,614
chr2	228207776	rs6740870	C	A	726.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=5.892;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr2	228216992	rs73997104	G	A	61.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:70,0,63
chr2	228220161	rs58426936	C	T	99.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.598;SOR=2.093;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:97:108,0,97
chr2	228220288	rs56310237	A	G	636.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;DB;DP=40;ExcessHet=3.0103;FS=3.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=1.07;SOR=0.223;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:645,0,536
chr2	228220528	rs12478005	T	C	1694.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.463;SOR=0.693;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:345,0,356
chr2	228221725	rs74713223	A	G	944.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=74;ExcessHet=3.0103;FS=3.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-2.447e+00;SOR=0.357;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,33:74:99:953,0,1082
chr2	228230727	rs75274263	G	A	135.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=0.180;SOR=0.941;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:144,0,108
chr2	228230945	rs76547437	G	A	947.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720e-01;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.217;SOR=0.793;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:956,0,791
chr2	228356364	rs11289047	GT	G	3322.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=49;ExcessHet=3.0103;FS=2.170;MQ=60.00;MQRankSum=0.00;QD=24.80;ReadPosRankSum=0.260;SOR=1.559;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,45:49:99:1198,145,0
chr2	228373404	rs11464376	A	AT	3185.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710e-01;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=0.026;SOR=0.801;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,33:45:76:796,0,76
chr2	228395648	rs12053112	C	A	1049.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=6.518;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:251,18,0
chr2	228399480	rs7588620	T	C	7979.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=1.099;VQSLOD=19.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1996,197,0
chr2	228416498	rs7598597	C	T	1826.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=7.658;VQSLOD=24.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:521,39,0
chr2	228416712	rs13426457	A	G	20792.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=219;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=1.298;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,219:219:99:6629,656,0
chr2	228418211	rs5839218	C	CA	415.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.600e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.442;SOR=0.655;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,9:11:5:183,5,0
chr2	228418957	rs13382948	A	G	383.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.44;SOR=4.804;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	228476140	rs2176186	C	T	3261.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.340e-01;DB;DP=86;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=-6.500e-01;SOR=0.684;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,46:86:99:1064,0,918
chr2	228476253	rs2138402	C	G	8198.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=76;ExcessHet=3.0103;FS=3.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=0.362;SOR=0.858;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2461,228,0
chr2	228493211	rs28739019	G	A	2783.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=95;ExcessHet=3.9794;FS=5.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-6.100e-02;SOR=1.106;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,53:95:99:1327,0,976
chr2	228560800	rs11334205	GA	G	5159.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=30.35;SOR=1.385;VQSLOD=3.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1956,192,0
chr2	228567111	rs71039629	AT	A	727.20	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.200e-01;DB;DP=11;ExcessHet=3.0103;FS=5.273;MQ=60.00;MQRankSum=0.00;QD=15.81;ReadPosRankSum=0.631;SOR=0.208;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:270,33,0
chr2	228680153	rs34834265	CT	C	195.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DB;DP=63;ExcessHet=3.9794;FS=3.343;MQ=60.00;MQRankSum=0.00;QD=1.66;ReadPosRankSum=0.206;SOR=0.425;VQSLOD=5.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:46,13:63:99:125,0,1133
chr2	228736313	rs12478068	G	T	4205.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.86;DB;DP=42;ExcessHet=3.9794;FS=3.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=-1.770e-01;SOR=1.384;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:656,0,688
chr2	228736527	rs12470042	A	G	9824.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=107;ExcessHet=3.0103;FS=1.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=1.24;SOR=0.875;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3654,321,0
chr2	228736608	rs10933219	C	T	4136.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.511e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=0.00;SOR=1.852;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1477,105,0
chr2	228740902	rs7583414	A	T	1857.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.795e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=-9.770e-01;SOR=3.219;VQSLOD=18.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:588,45,0
chr2	228740927	rs4972994	G	A	2565.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.73;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.07;ReadPosRankSum=0.480;SOR=3.202;VQSLOD=18.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:802,60,0
chr2	228741250	rs7571353	T	A	4239.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.22;DB;DP=45;ExcessHet=3.0103;FS=1.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.44;ReadPosRankSum=-1.356e+00;SOR=0.487;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1568,135,0
chr2	228750239	rs4973445	G	T	3519.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=31;ExcessHet=3.0103;FS=1.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.43;ReadPosRankSum=0.463;SOR=0.542;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1178,93,0
chr2	228750367	rs11377802	T	TA	159.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=-9.670e-01;SOR=2.584;VQSLOD=6.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr2	228758456	rs35758334	C	A	7446.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=88;ExcessHet=3.0103;FS=11.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=1.58;SOR=0.284;VQSLOD=16.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2728,254,0
chr2	228767618	rs2949014	T	C	2296.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.30;SOR=5.926;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
chr2	228776938	rs3748863	A	G	1534.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=-2.340e-01;SOR=0.582;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:174,0,340
chr2	228776996	rs3748862	T	C	2773.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883e+00;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=0.290;SOR=0.693;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,40:60:99:1310,0,594
chr2	228783364	rs4973494	A	C	1181.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=4.047;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:234,18,0
chr2	228783479	rs1533960	C	A	499.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.61;ReadPosRankSum=-1.260e-01;SOR=0.784;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,24:58:99:508,0,791
chr2	228788484	rs1721344	T	C	58.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:67,0,66
chr2	228846763	rs1011344	G	C	1815.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.42;SOR=2.985;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:228846763_G_C:621,48,0:228846763
chr2	228846767	rs145784667	AT	A	1250.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.070e-01;DB;DP=12;ExcessHet=3.0103;FS=2.364;MQ=59.95;MQRankSum=-6.150e-01;POSITIVE_TRAIN_SITE;QD=31.26;ReadPosRankSum=0.275;SOR=1.971;VQSLOD=0.504;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:39:1|1:228846763_G_C:503,39,0:228846763
chr2	228855684	rs72973313	C	T	4338.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.790e-01;DB;DP=87;ExcessHet=1.5490;FS=3.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=0.810;SOR=0.715;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2750,260,0
chr2	228858553	rs10173136	C	A	1713.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.97;SOR=3.398;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:488,48,0
chr2	228880985	rs370982894	AT	A	79.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.840e-01;DB;DP=14;ExcessHet=3.9794;FS=1.819;MQ=59.86;MQRankSum=0.00;QD=2.33;ReadPosRankSum=-2.320e-01;SOR=0.307;VQSLOD=5.27;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:21:21,0,229
chr2	228883392	rs150102188	A	G	3324.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=0.693;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3341,294,0
chr2	228883721	rs3811514	T	C	5353.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.01;DB;DP=100;ExcessHet=1.5490;FS=3.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=1.40;SOR=0.923;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3491,300,0
chr2	228886413	rs11292511	TG	T	3897.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.004e+00;DB;DP=67;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.34;ReadPosRankSum=-8.490e-01;SOR=0.674;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2492,202,0
chr2	228886780	rs369663814	G	A	485.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.93;SOR=2.833;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:502,39,0
chr2	228973383	rs67714256	A	C	486.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.136;DB;DP=7;ExcessHet=1.5490;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=-1.866e+00;SOR=0.084;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr2	228973660	rs7561798	A	G	3641.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.690e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.14;ReadPosRankSum=-1.130e-01;SOR=0.757;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1139,99,0
chr2	228973723	rs11374866	C	CT	588.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.64;MQRankSum=0.00;QD=18.99;ReadPosRankSum=0.707;SOR=1.552;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:185,21,0
chr2	228992763	rs6719186	G	A	250.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.067e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.618;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
chr2	228992850	rs6734166	T	C	1544.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.820e-01;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-5.690e-01;SOR=0.646;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:842,78,0
chr2	228993349	rs13422230	G	T	320.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.04;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-1.677e+00;SOR=1.352;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr2	228996438	rs4246654	A	G	117.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.26;SOR=2.833;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	228996470	rs4353645	A	G	160.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.00;SOR=3.258;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr2	228996637	rs4479423	G	A	1712.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.310e-01;DB;DP=41;ExcessHet=1.5490;FS=1.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=-5.420e-01;SOR=0.475;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1215,123,0
chr2	228996650	rs4353646	A	G	1934.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.010e-01;DB;DP=48;ExcessHet=1.5490;FS=3.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=-1.530e-01;SOR=0.382;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1421,143,0
chr2	228996672	rs4585022	G	A	2138.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.176e+00;DB;DP=53;ExcessHet=1.5490;FS=7.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=0.871;SOR=0.245;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1572,159,0
chr2	228996995	rs5013548	C	T	3397.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=86;ExcessHet=1.5490;FS=3.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.523;SOR=0.973;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2442,257,0
chr2	228997009	rs66910205	C	T	3099.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=75;ExcessHet=1.5490;FS=2.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=0.769;SOR=0.937;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2256,225,0
chr2	229035351	rs12618108	T	G	2953.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=41;ExcessHet=3.9794;FS=4.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=-2.700e-02;SOR=1.173;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,16:41:99:0|1:229035351_T_G:586,0,981:229035351
chr2	229035356	rs13408688	T	G	598.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-5.300e-02;SOR=0.701;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,17:41:99:0|1:229035351_T_G:607,0,978:229035351
chr2	229035357	rs4630759	T	A	1025.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.950e-01;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.013;SOR=0.629;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:547,0,642
chr2	229035442	rs4334483	A	T	306.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;DB;DP=13;ExcessHet=3.9794;FS=2.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=1.18;SOR=1.286;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:89:89,0,298
chr2	229035592	rs10179355	G	A	186.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.31;SOR=3.611;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr2	229890094	rs10649882	T	TAAG	842.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-1.282e+00;SOR=2.833;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,140
chr2	230092517	rs56344841	A	G	808.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.96;ReadPosRankSum=0.319;SOR=2.066;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:103,0,26
chr2	230092723	rs1362242	G	A	721.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307e+00;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.045;SOR=0.616;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,30:53:99:730,0,602
chr2	230092889	rs1419944	C	T	1654.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=2.73;SOR=0.750;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:403,0,294
chr2	230092950	rs1419945	C	T	819.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=-1.800e-01;SOR=1.244;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,200
chr2	230096837	rs6743582	C	T	549.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.413e+00;DB;DP=37;ExcessHet=3.9794;FS=0.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.04;ReadPosRankSum=0.376;SOR=0.899;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,14:37:99:225,0,545
chr2	230135527	rs1227013	C	T	2466.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.74;SOR=2.336;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:772,69,0
chr2	230135711	rs67686611	G	GC	9907.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.36;SOR=0.803;VQSLOD=5.46;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3363,274,0
chr2	230135807	rs372054613	T	C	574.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=63;ExcessHet=3.0103;FS=3.727;MQ=60.00;MQRankSum=0.00;QD=9.12;ReadPosRankSum=7.000e-03;SOR=1.264;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,23:63:99:583,0,1155
chr2	230231889	rs2302769	A	T	3674.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.618e+00;DB;DP=63;ExcessHet=3.9794;FS=8.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.192;SOR=1.268;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,25:63:99:659,0,1118
chr2	230252758	rs207666	G	A	406.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.08;SOR=4.804;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr2	230282624	rs6760224	G	A	1056.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=1.68;SOR=1.666;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:281,0,246
chr2	230282649	.	A	G	392.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.680e-01;DP=28;ExcessHet=3.0103;FS=2.251;MQ=60.00;MQRankSum=0.00;QD=14.01;ReadPosRankSum=0.299;SOR=0.169;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:401,0,473
chr2	230283310	rs6735031	A	G	395.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=4.804;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr2	230377392	rs6717730	T	C	327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=1.13;SOR=1.244;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:336,0,199
chr2	230453214	rs11458391	G	GA	1414.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.34;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=0.528;SOR=0.643;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:23:72:669,72,0
chr2	230655613	rs11354166	GT	G	81.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.32;SOR=2.833;VQSLOD=5.12;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr2	230655733	rs722268	C	T	3187.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=4.431;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1032,84,0
chr2	230657496	rs4973228	G	T	292.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.68;SOR=4.407;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr2	230657713	rs199688160	T	C	654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118e+00;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.28;ReadPosRankSum=1.39;SOR=0.588;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:663,0,777
chr2	230666898	rs10432554	A	G	1656.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.26;ReadPosRankSum=-1.676e+00;SOR=0.929;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:409,33,0
chr2	230668968	rs4972915	G	A	3371.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.326;DB;DP=48;ExcessHet=3.0103;FS=5.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=-7.580e-01;SOR=1.483;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1515,143,0
chr2	230797512	.	G	A	33.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.310e-01;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.08;ReadPosRankSum=1.03;SOR=0.473;VQSLOD=20.62;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:42:0|1:230797512_G_A:42,0,748:230797512
chr2	230797524	.	G	A	33.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.310e-01;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.08;ReadPosRankSum=0.397;SOR=0.307;VQSLOD=20.80;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:42:0|1:230797512_G_A:42,0,748:230797512
chr2	230875311	rs11675143	G	A	905.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DB;DP=88;ExcessHet=3.0103;FS=9.498;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-4.430e-01;SOR=1.668;VQSLOD=19.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,35:88:99:914,0,1485
chr2	230911044	rs140272119	C	T	1941.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440e-01;DB;DP=173;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;QD=11.22;ReadPosRankSum=0.493;SOR=1.002;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,82:173:99:1950,0,2272
chr2	230914361	rs4358112	G	C	499.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=-7.280e-01;SOR=1.230;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr2	230914766	rs6748654	T	C	2469.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=-7.780e-01;SOR=0.791;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:823,69,0
chr2	230923648	rs9750739	C	G	610.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.675e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.435;SOR=0.437;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:77:77,0,303
chr2	230923781	rs181713579	G	A	980.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.07;ReadPosRankSum=-9.120e-01;SOR=0.802;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,36:75:99:989,0,1017
chr2	230924258	rs56887438	G	T	123.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.93;SOR=1.179;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	230931354	rs10624895	A	ATT	1489.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.140e-01;DB;DP=42;ExcessHet=3.9794;FS=2.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=0.609;SOR=0.432;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,12:42:99:351,0,532
chr2	230931566	rs4246640	A	C	660.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.48;SOR=3.126;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:230931566_A_C:135,9,0:230931566
chr2	230931567	rs4973256	C	T	660.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.78;SOR=3.126;VQSLOD=18.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:230931566_A_C:135,9,0:230931566
chr2	231025377	rs6710057	T	G	862.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-5.370e-01;SOR=0.544;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,27:33:99:871,0,119
chr2	231025410	rs6752144	C	T	778.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=-1.081e+00;SOR=0.922;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,27:35:99:787,0,131
chr2	231025461	rs6710106	T	C	560.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=1.05;SOR=0.653;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,20:27:99:569,0,109
chr2	231025544	rs55658028	G	A	444.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.73;ReadPosRankSum=1.87;SOR=2.303;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,11:14:93:0|1:231025544_G_A:453,0,93:231025544
chr2	231025545	rs1549574	T	G	984.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.817e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.96;ReadPosRankSum=1.87;SOR=1.675;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,11:14:93:0|1:231025544_G_A:453,0,93:231025544
chr2	231035099	rs77654831	C	G	140.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=-4.310e-01;SOR=3.258;VQSLOD=17.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:31:149,0,31
chr2	231036860	rs3948463	C	T	1068.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.018e+00;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=1.73;SOR=0.657;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,50:103:99:1077,0,1417
chr2	231037616	rs35495464	A	G	1222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=117;ExcessHet=3.0103;FS=0.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-7.170e-01;SOR=0.767;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,51:117:99:1231,0,1492
chr2	231037833	rs10498244	T	C	514.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.310e-01;DB;DP=42;ExcessHet=3.0103;FS=3.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=1.24;SOR=1.445;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:523,0,621
chr2	231042276	rs1135791	A	G	3051.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.979;DB;DP=76;ExcessHet=1.5490;FS=1.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-9.570e-01;SOR=0.592;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2177,227,0
chr2	231048200	rs139374219	GAGA	G	967.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=43;ExcessHet=3.0103;FS=4.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=0.653;SOR=1.532;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,25:43:99:976,0,769
chr2	231050715	rs3948464	A	G	10011.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.410e-01;DB;DP=123;ExcessHet=3.0103;FS=3.656;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=-2.653e+00;SOR=0.991;VQSLOD=6.24;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3579,369,0
chr2	231065722	rs41309108	A	T	418.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=0.338;SOR=0.474;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:427,0,345
chr2	231065880	rs61182521	G	A	92.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:101,0,72
chr2	231067590	rs73000371	C	T	396.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.215e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=-1.345e+00;SOR=0.420;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:405,0,289
chr2	231072709	rs1365776	C	T	3680.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=0.401;SOR=0.788;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:570,0,760
chr2	231076032	rs3769837	G	T	1175.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=0.230;SOR=0.836;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:166,0,275
chr2	231077110	rs9061	C	T	1244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=115;ExcessHet=3.0103;FS=2.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-2.000e-02;SOR=1.006;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,49:115:99:1253,0,1623
chr2	231077360	rs6749386	A	G	4800.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=53;ExcessHet=3.0103;FS=2.293;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.01;ReadPosRankSum=-4.180e-01;SOR=0.408;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1828,159,0
chr2	231077725	rs1129411	A	G	3895.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.750e-01;DB;DP=39;ExcessHet=3.0103;FS=0.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=1.79;SOR=0.797;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1207,117,0
chr2	231077868	rs7601176	A	G	659.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=14;ExcessHet=1.5490;FS=5.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=-3.490e-01;SOR=2.517;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:461,42,0
chr2	231077911	rs7601190	A	C	767.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.60;ReadPosRankSum=0.674;SOR=4.514;VQSLOD=17.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:269,18,0
chr2	231103185	rs2278197	A	G	1684.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=0.102;SOR=0.885;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:240,0,241
chr2	231110582	rs28445040	C	T	899.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=77;ExcessHet=3.0103;FS=0.876;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.471;SOR=0.914;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,35:77:99:908,0,1036
chr2	231110737	rs3813464	C	T	110.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-1.795e+00;SOR=1.981;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:119,0,202
chr2	231113499	rs13426106	G	A	63.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:72:72,0,73
chr2	231113910	rs3813466	T	C	2732.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=27;ExcessHet=3.9794;FS=1.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=0.243;SOR=1.019;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:361,0,423
chr2	231115454	rs9989735	G	C	317.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.143e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=1.37;SOR=0.481;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:326,0,489
chr2	231115603	rs9989792	T	C	2982.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198e+00;DB;DP=126;ExcessHet=3.9794;FS=1.503;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.574;SOR=0.663;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,62:126:99:1389,0,1568
chr2	231115630	rs9989835	A	T	1455.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.836e+00;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.443;SOR=0.694;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,63:128:99:1464,0,1703
chr2	231115790	rs9989746	G	A	195.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.503;SOR=0.293;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:204,0,379
chr2	231119914	rs28693552	G	C	158.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-3.210e-01;SOR=1.022;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:167,0,279
chr2	231120255	rs55829350	CG	C	1265.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.44;ReadPosRankSum=1.69;SOR=2.265;VQSLOD=5.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:430,45,0
chr2	231134078	rs66470242	AGCGTG	A	706.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=1.45;SOR=0.804;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,19:45:99:715,0,1825
chr2	231149108	rs4972946	G	A	2806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.41;SOR=0.743;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:905,90,0
chr2	231150806	rs2303542	C	T	220.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:128,0,103
chr2	231157512	rs6710297	A	G	540.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.063e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=-1.492e+00;SOR=0.826;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:549,0,483
chr2	231157527	rs6739193	G	A	2559.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.621e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.25;ReadPosRankSum=-7.190e-01;SOR=1.609;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1044,81,0
chr2	231162341	rs13405136	G	T	1008.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.565e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.82;ReadPosRankSum=0.555;SOR=1.022;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,15:16:4:535,4,0
chr2	231175549	rs200258126	T	C	94.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=40.00;MQRankSum=0.00;QD=18.85;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=-4.886e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:60:103,0,60
chr2	231175763	rs78116662	G	A	1071.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099e+00;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=57.80;MQRankSum=0.761;QD=14.28;ReadPosRankSum=0.538;SOR=0.804;VQSLOD=-1.059e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:518,0,530
chr2	231177200	rs3086614	CTT	C	303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.95;ReadPosRankSum=-8.040e-01;SOR=0.976;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:312,0,213
chr2	231191601	rs56090445	AT	A	175.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=21.88;SOR=1.863;VQSLOD=3.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:131,15,0
chr2	231191756	rs2007304	C	T	905.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=18;ExcessHet=6.9897;FS=2.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.352;SOR=0.434;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:196,0,334
chr2	231222340	rs16827148	T	G	200.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.28;SOR=1.402;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:70:70,0,113
chr2	231223975	rs11678791	C	T	472.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.60;DB;DP=34;ExcessHet=3.0103;FS=3.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=1.67;SOR=0.132;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:481,0,609
chr2	231235886	rs11689260	C	T	2306.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.60;ReadPosRankSum=0.651;SOR=6.837;VQSLOD=19.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:738,57,0
chr2	231253183	rs72996270	A	G	533.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.41;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.37;ReadPosRankSum=0.524;SOR=1.863;VQSLOD=3.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:25:118,0,25
chr2	231253216	rs11688362	A	G	722.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=0.414;SOR=2.387;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:92:164,0,92
chr2	231253434	rs7586155	T	G	1912.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=0.826;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1929,186,0
chr2	231254570	rs12694859	C	T	316.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.58;SOR=4.407;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:333,24,0
chr2	231256755	rs10184953	C	T	4658.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.793;DB;DP=168;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=-7.020e-01;SOR=1.118;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,166:168:99:4675,454,0
chr2	231258150	rs7590429	C	T	2020.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.397e+00;DB;DP=46;ExcessHet=1.5490;FS=3.672;MQ=59.96;MQRankSum=-8.430e-01;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-9.540e-01;SOR=0.368;VQSLOD=2.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1424,137,0
chr2	231258450	rs6436932	A	G	676.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.62;SOR=5.670;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr2	231261152	rs6436934	T	C	473.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.35;SOR=5.136;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr2	231266663	rs62192247	C	A	127.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=46.07;MQRankSum=0.842;QD=25.49;ReadPosRankSum=0.524;SOR=1.981;VQSLOD=-2.632e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:17:136,0,17
chr2	231280791	rs28365916	T	C	378.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.94;ReadPosRankSum=0.414;SOR=0.892;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:34:34,0,98
chr2	231282534	rs35969967	C	CT	395.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=1.96;SOR=1.101;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:116,0,178
chr2	231305191	rs73095038	G	T	193.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:202,0,183
chr2	231313696	.	G	A	404.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.168e+00;DP=22;ExcessHet=3.0103;FS=2.105;MQ=60.00;MQRankSum=0.00;QD=18.38;ReadPosRankSum=-1.871e+00;SOR=0.242;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,15:22:99:413,0,205
chr2	231314093	rs62193406	G	A	769.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.560e-01;DB;DP=66;ExcessHet=3.0103;FS=0.950;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.863;SOR=0.532;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:778,0,972
chr2	231328696	rs2306274	C	T	653.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=16;ExcessHet=6.9897;FS=1.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.537;SOR=0.456;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:210,0,291
chr2	231330899	rs57983447	CA	C	268.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=9;ExcessHet=6.9897;FS=1.946;MQ=59.79;MQRankSum=0.00;QD=9.60;ReadPosRankSum=0.619;SOR=1.356;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:96:0|1:231330899_CA_C:96,0,107:231330899
chr2	231330916	.	A	AAAAAAAC	158.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.170e-01;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.62;MQRankSum=-1.273e+00;QD=10.55;ReadPosRankSum=-8.570e-01;SOR=0.941;VQSLOD=0.293;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,5:15:99:1|0:231330899_CA_C:167,0,321:231330899
chr2	231331694	rs1678159	A	G	1809.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=26;ExcessHet=6.9897;FS=6.375;MQ=60.00;MQRankSum=0.00;QD=13.61;ReadPosRankSum=-7.530e-01;SOR=0.323;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,10:26:99:0|1:231331694_A_G:417,0,1066:231331694
chr2	231331701	rs3214547	A	AG	1967.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;DB;DP=28;ExcessHet=6.9897;FS=3.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-1.142e+00;SOR=0.433;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,11:28:99:0|1:231331694_A_G:392,0,1102:231331694
chr2	231331799	rs1649869	T	C	3869.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DB;DP=86;ExcessHet=6.9897;FS=1.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.426;SOR=0.799;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,33:86:99:843,0,1295
chr2	231331896	rs1050224	G	A	5317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DB;DP=143;ExcessHet=6.9897;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.282e+00;SOR=0.641;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,53:143:99:1263,0,2297
chr2	231332195	rs34542723	G	A	174.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=0.700;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:183,0,166
chr2	231332218	rs1621973	G	A	318.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.88;ReadPosRankSum=1.65;SOR=0.941;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:103,0,63
chr2	231333536	.	A	AG	37.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.860e-01;DP=12;ExcessHet=3.9794;FS=0.000;MQ=58.87;MQRankSum=0.00;QD=1.22;ReadPosRankSum=0.357;SOR=0.709;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:46:46,0,178
chr2	231337960	rs1615190	C	T	2953.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.196e+00;DB;DP=46;ExcessHet=3.0103;FS=3.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=1.01;SOR=1.119;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1427,138,0
chr2	231359225	rs6759377	T	C	949.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=89;ExcessHet=3.0103;FS=1.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.991;SOR=0.884;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,38:89:99:958,0,1274
chr2	231363252	rs34979917	TA	T	1352.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.086e+00;DB;DP=17;ExcessHet=0.4576;FS=4.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=0.920;SOR=1.397;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,16:17:24:381,24,0
chr2	231368897	rs6705605	G	T	312.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.460e-01;DB;DP=28;ExcessHet=3.0103;FS=2.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-4.800e-02;SOR=2.147;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:321,0,588
chr2	231373027	rs12992775	T	A	57.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.59;SOR=2.303;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
chr2	231375974	rs16827319	G	A	1339.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;DB;DP=124;ExcessHet=3.0103;FS=4.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.387;SOR=1.143;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,55:124:99:1348,0,1722
chr2	231406070	rs17275036	G	A	1296.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e+00;DB;DP=98;ExcessHet=3.0103;FS=0.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.523;SOR=0.815;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,52:98:99:1305,0,1209
chr2	231406259	rs1678149	G	A	1460.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=5.784;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:424,30,0
chr2	231406332	rs6728193	T	G	111.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=2.833;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr2	231406529	rs6728423	T	C	102.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:111,0,70
chr2	231406680	rs836237	T	C	4783.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.28;SOR=1.252;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1438,141,0
chr2	231406846	rs10199013	G	A	1216.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=-3.130e-01;SOR=0.981;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:275,0,172
chr2	231407342	rs10199349	C	A	875.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=21;ExcessHet=1.5490;FS=14.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=0.761;SOR=4.427;VQSLOD=12.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:256,0,369
chr2	231407372	rs864460	T	C	3281.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.060e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.87;ReadPosRankSum=1.60;SOR=1.567;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:819,72,0
chr2	231407519	rs6717269	C	T	9019.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.47;ReadPosRankSum=0.321;SOR=0.792;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2360,224,0
chr2	231407663	rs9288668	C	T	4316.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.070e-01;DB;DP=109;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=0.131;SOR=0.737;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,60:109:99:1591,0,1254
chr2	231407863	rs11368814	G	GA	1666.23	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.13;ReadPosRankSum=1.19;SOR=4.047;VQSLOD=4.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,15:16:11:520,11,0
chr2	231678693	.	CTTTTTTTTTTTTTT	C	353.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=1.5490;FS=0.000;MQ=59.14;MQRankSum=0.674;QD=29.85;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=-1.073e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,1:2:39:39,0,133
chr2	231729448	rs3098325	C	T	120.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.43;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,78
chr2	231738168	rs2289235	G	A	4411.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-01;DB;DP=107;ExcessHet=6.9897;FS=1.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-3.650e-01;SOR=0.596;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,56:107:99:1514,0,1347
chr2	231738263	rs2289234	C	T	8771.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e+00;DB;DP=169;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=-3.560e-01;SOR=0.667;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:98,71:169:99:0|1:231738263_C_T:2623,0,4346:231738263
chr2	231738269	rs2289233	G	A	8623.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.810e-01;DB;DP=166;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=-4.340e-01;SOR=0.665;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:96,70:166:99:0|1:231738263_C_T:2602,0,4331:231738263
chr2	231738318	rs3816150	T	C	4298.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DB;DP=137;ExcessHet=6.9897;FS=1.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-9.520e-01;SOR=0.845;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,57:137:99:1364,0,2041
chr2	231740276	rs2289231	A	G	2302.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=30;ExcessHet=3.9794;FS=5.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=0.759;SOR=1.795;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:403,0,502
chr2	231742711	rs60237566	T	G	2073.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=136;ExcessHet=3.0103;FS=1.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=-1.416e+00;SOR=0.875;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,77:136:99:2082,0,1280
chr2	231775297	rs1992186	T	G	3564.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.33;DB;DP=140;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.148;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,74:140:99:1979,0,1807
chr2	231860838	rs2271369	C	T	1581.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=2.432;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:231860838_C_T:1598,108,0:231860838
chr2	231860848	rs6722863	A	G	3576.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.530e+00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=1.10;SOR=0.622;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:231860838_C_T:1808,126,0:231860838
chr2	231861032	rs72362780	TCAGCAGCCTAGCCCTGAATCCACACCA	T	9421.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.57;SOR=1.280;VQSLOD=3.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,220:220:99:9438,669,0
chr2	231864167	rs2136472	T	C	115.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.74;SOR=2.833;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr2	231864187	rs2136473	G	A	111.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=2.833;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr2	231864289	rs2136474	A	C	883.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=18;ExcessHet=1.5490;FS=4.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.57;ReadPosRankSum=-2.040e-01;SOR=2.753;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:718,54,0
chr2	231864529	rs6436986	A	G	3877.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.889;DB;DP=87;ExcessHet=1.5490;FS=7.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=0.054;SOR=0.928;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2803,261,0
chr2	231864600	rs7573039	T	C	3129.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.76;DB;DP=68;ExcessHet=1.5490;FS=2.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.18;ReadPosRankSum=0.639;SOR=0.970;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2256,204,0
chr2	231864646	rs11684067	A	G	1438.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=1.329;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1455,138,0
chr2	231865018	rs13406394	A	G	3487.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.79;DB;DP=73;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.189;SOR=0.675;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2552,219,0
chr2	231865047	rs3817173	T	C	4343.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.66;DB;DP=86;ExcessHet=1.5490;FS=1.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=-1.850e-01;SOR=0.938;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2963,258,0
chr2	231865090	rs2271376	T	C	6027.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.346e+00;DB;DP=118;ExcessHet=1.5490;FS=1.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=-9.080e-01;SOR=0.858;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3937,354,0
chr2	231865269	rs2271375	G	T	8152.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.954e+00;DB;DP=181;ExcessHet=1.5490;FS=2.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=0.055;SOR=0.568;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5487,543,0
chr2	231865395	rs2271374	C	G	1543.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.020e-01;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=-2.090e-01;SOR=1.981;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:689,48,0
chr2	231865455	rs2271373	C	T	632.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.515e+00;DB;DP=10;ExcessHet=1.5490;FS=8.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=-2.660e-01;SOR=3.611;VQSLOD=12.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:352,30,0
chr2	231867177	rs11687462	A	G	692.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.45;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=-5.430e-01;SOR=1.302;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:487,33,0
chr2	231867220	rs10933364	A	G	1394.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.919e+00;DB;DP=18;ExcessHet=3.9794;FS=3.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=0.751;SOR=0.140;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:645,54,0
chr2	231867658	rs2271371	C	T	475.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=1.03;SOR=1.609;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:359,27,0
chr2	231902316	rs186173488	T	C	242.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.01;ReadPosRankSum=1.87;SOR=0.804;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:178,0,205
chr2	231902471	rs190787545	C	G	178.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.22;ReadPosRankSum=0.431;SOR=0.892;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:70:117,0,70
chr2	231905752	rs11458515	A	AG	230.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.480;SOR=0.693;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:25:147,0,25
chr2	231921586	rs12469096	G	C	1048.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892e+00;DB;DP=39;ExcessHet=3.9794;FS=0.775;MQ=60.00;MQRankSum=0.00;QD=9.70;ReadPosRankSum=-1.800e-01;SOR=0.569;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,14:39:99:283,0,751
chr2	231944373	rs2303353	A	T	1165.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.058;DB;DP=42;ExcessHet=3.9794;FS=1.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.41;SOR=0.462;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,25:42:99:607,0,373
chr2	231947432	rs2007131	C	A	245.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=1.22;SOR=0.247;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:203,0,298
chr2	231947758	rs371456617	ATG	A	528.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=46;ExcessHet=3.0103;FS=1.889;MQ=60.00;MQRankSum=0.00;QD=11.48;ReadPosRankSum=1.52;SOR=1.329;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,15:46:99:537,0,1317
chr2	231948178	rs906879	A	G	252.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.105;SOR=0.346;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:168,0,214
chr2	231949946	rs2303357	G	A	1646.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.538;SOR=0.622;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:685,0,775
chr2	231951700	.	C	T	195.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.75;ReadPosRankSum=0.352;SOR=0.859;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:204,0,178
chr2	232011261	rs3835946	T	TAC	190.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=1.15;SOR=1.179;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,83
chr2	232025952	rs35533383	T	TA	236.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=13;ExcessHet=3.9794;FS=5.997;MQ=60.00;MQRankSum=0.00;QD=6.95;ReadPosRankSum=0.847;SOR=2.494;VQSLOD=3.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,3:13:36:36,0,220
chr2	232029738	rs60566945	TTATATATATTTATATATATATATATATATATATATATATATATATATATATATA	T	1742.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.88;SOR=2.613;VQSLOD=4.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:51:727,51,0
chr2	232030510	rs2303351	C	A	375.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.53;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=0.210;SOR=2.303;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:24:179,0,24
chr2	232030555	rs2303350	G	A	553.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.84;ReadPosRankSum=1.23;SOR=1.071;VQSLOD=5.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:222,0,141
chr2	232030861	rs2303349	A	G	1053.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=0.749;SOR=1.066;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:269,0,425
chr2	232035429	rs6749	G	A	2383.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.309e+00;DB;DP=79;ExcessHet=3.9794;FS=1.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=1.25;SOR=0.808;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,36:79:99:907,0,1255
chr2	232072796	rs112353881	ATTTG	A	690.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=11;ExcessHet=1.5490;FS=9.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.57;ReadPosRankSum=0.878;SOR=3.841;VQSLOD=2.98;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,11:11:33:490,33,0
chr2	232072912	rs11558174	T	C	2480.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.800e-02;DB;DP=64;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=0.628;SOR=0.760;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1892,192,0
chr2	232073106	rs12465438	G	A	1192.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.672;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=2.27;SOR=0.765;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,17:18:12:589,12,0
chr2	232087474	rs1626450	A	G	4039.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.91;SOR=1.338;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:93:1|1:232087474_A_G:1374,93,0:232087474
chr2	232087475	rs1626451	T	A	4039.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=1.255;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:232087474_A_G:1374,93,0:232087474
chr2	232091757	rs10181630	C	T	201.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=-5.240e-01;SOR=1.085;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:75:105,0,75
chr2	232135541	rs7604042	A	T	1990.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=54;ExcessHet=3.9794;FS=3.652;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.14;ReadPosRankSum=0.881;SOR=0.429;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,32:54:99:1101,0,597
chr2	232141530	rs201454938	G	A	660.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.163e+00;DB;DP=55;ExcessHet=3.0103;FS=1.214;MQ=60.00;MQRankSum=0.00;QD=12.00;ReadPosRankSum=-1.061e+00;SOR=0.941;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,24:55:99:669,0,940
chr2	232160554	rs12623587	C	A	59.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=1.83;SOR=0.307;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,142
chr2	232196472	rs1729082	T	A	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-2.480e+00;SOR=0.903;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:660,0,481
chr2	232196564	rs1669083	C	T	1194.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e-01;DB;DP=84;ExcessHet=3.0103;FS=2.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=1.80;SOR=0.430;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1203,0,1056
chr2	232196597	rs1669084	G	A	1434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=0.607;SOR=0.625;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,51:97:99:1443,0,1089
chr2	232225535	rs35889244	C	CG	16776.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.89;SOR=0.773;VQSLOD=5.49;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4693,421,0
chr2	232235950	rs16828017	A	G	276.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.070e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=0.578;SOR=0.752;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,13:40:99:285,0,765
chr2	232236068	rs75457429	G	A	598.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.120e-01;DB;DP=32;ExcessHet=3.0103;FS=3.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=-2.650e-01;SOR=0.269;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,22:32:99:607,0,288
chr2	232236439	rs58092703	A	G	387.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.380e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=-1.026e+00;SOR=0.892;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:396,0,310
chr2	232260537	rs4972989	T	G	581.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=17;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;QD=21.53;ReadPosRankSum=-6.040e-01;SOR=0.438;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:93:241,0,93
chr2	232317402	rs11295750	CA	C	4636.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-02;DB;DP=68;ExcessHet=6.9897;FS=1.555;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=-7.480e-01;SOR=0.582;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,42:68:99:1368,0,765
chr2	232320856	rs150234462	G	GA	995.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=27;ExcessHet=6.9897;FS=3.838;MQ=60.00;MQRankSum=0.00;QD=9.76;ReadPosRankSum=0.660;SOR=0.377;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:261,0,349
chr2	232321956	rs7598759	C	T	6217.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=77;ExcessHet=3.0103;FS=2.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=-1.325e+00;SOR=0.492;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1071,0,1103
chr2	232322779	rs6754426	G	A	728.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.70;ReadPosRankSum=0.431;SOR=1.981;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:140,0,65
chr2	232322829	rs6712148	T	C	611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=14;ExcessHet=6.9897;FS=1.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-1.611e+00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:271,0,132
chr2	232324780	rs2442322	A	G	1129.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=6.593;VQSLOD=23.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:224,15,0
chr2	232325692	rs12996154	A	C	978.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.245e+00;DB;DP=30;ExcessHet=3.9794;FS=2.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=0.306;SOR=0.357;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:445,0,395
chr2	232326801	rs2595514	A	T	5437.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=2.004;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1315,119,0
chr2	232326873	rs147456242	TTC	T	895.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=0.341;SOR=0.743;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:397,0,222
chr2	232327584	rs6437017	C	A	345.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.51;ReadPosRankSum=0.967;SOR=0.307;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:72,0,32
chr2	232327691	rs6437018	A	C	836.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=-1.150e+00;SOR=4.892;VQSLOD=13.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:119,0,30
chr2	232327707	rs6437019	T	C	985.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=8.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.08;ReadPosRankSum=-5.240e-01;SOR=5.058;VQSLOD=12.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:35:115,0,35
chr2	232378231	rs6750795	T	C	13418.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.141e+00;DB;DP=168;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=-1.300e-02;SOR=0.620;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,104:168:99:2640,0,1513
chr2	232389529	rs3752760	C	G	1153.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.97;ReadPosRankSum=0.414;SOR=0.892;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:232389529_C_G:159,0,183:232389529
chr2	232389530	rs3752761	A	G	1153.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=0.732;SOR=0.760;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:232389529_C_G:159,0,183:232389529
chr2	232389587	rs58655546	CCCT	C	2218.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=16;ExcessHet=3.9794;FS=2.333;MQ=60.00;MQRankSum=0.00;QD=29.20;ReadPosRankSum=1.40;SOR=1.064;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:222,0,416
chr2	232389744	rs3752762	A	G	4024.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=2.13;SOR=0.652;VQSLOD=6.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,31:62:99:918,0,812
chr2	232390151	rs3752763	A	G	3133.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=46;ExcessHet=3.9794;FS=2.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=-1.430e-01;SOR=0.456;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:800,0,622
chr2	232395275	rs6147224	TTGGAGGCGACACCTCCACAAGCAGCG	T	1054.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.77;ReadPosRankSum=-1.890e-01;SOR=2.303;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:119,0,608
chr2	232458443	rs10933378	T	C	22307.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=0.861;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,210:210:99:7342,630,0
chr2	232573561	rs142680297	C	T	1590.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440e-01;DB;DP=105;ExcessHet=3.0103;FS=6.576;MQ=60.00;MQRankSum=0.00;QD=15.15;ReadPosRankSum=2.06;SOR=1.338;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,60:105:99:1599,0,1125
chr2	232576431	rs2070936	T	C	364.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.10;ReadPosRankSum=-3.190e-01;SOR=0.399;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:107,0,29
chr2	232790053	rs5268	C	T	2341.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=29;ExcessHet=6.9897;FS=3.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=0.790;SOR=0.339;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:523,0,437
chr2	232790491	rs11900720	C	T	785.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486e+00;DB;DP=32;ExcessHet=3.9794;FS=1.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.987;SOR=0.446;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:478,0,494
chr2	232888856	rs896990	T	G	1675.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=5.994;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:396,30,0
chr2	232952143	rs35104431	CT	C	489.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.62;ReadPosRankSum=0.664;SOR=0.843;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,4:22:45:45,0,416
chr2	233028070	rs3116181	A	G	1194.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.506;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.16;ReadPosRankSum=0.182;SOR=0.646;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:660,57,0
chr2	233204830	.	C	T	68.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=22.86;ReadPosRankSum=0.00;SOR=2.225;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:76,0,36
chr2	233243981	rs13026692	A	T	8332.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.021;DB;DP=182;ExcessHet=1.5490;FS=0.000;MQ=59.98;MQRankSum=-1.400e-02;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=1.44;SOR=0.717;VQSLOD=2.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,180:182:99:5709,460,0
chr2	233244586	rs2853374	C	G	7968.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=98;ExcessHet=3.0103;FS=13.507;MQ=59.71;MQRankSum=-2.324e+00;NEGATIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=1.59;SOR=0.219;VQSLOD=-2.036e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3345,294,0
chr2	233251366	rs12328730	C	T	10268.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.451e+00;DB;DP=246;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=-5.400e-02;SOR=0.739;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,246:246:99:7608,736,0
chr2	233274145	rs2090543	G	C	19342.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.46;DB;DP=232;ExcessHet=3.0103;FS=5.065;MQ=53.07;MQRankSum=-1.003e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=-1.010e+00;SOR=1.248;VQSLOD=0.142;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,232:232:99:8162,696,0
chr2	233310058	rs790043	C	T	772.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.600e-01;DB;DP=14;ExcessHet=1.5490;FS=2.895;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=-1.359e+00;SOR=0.356;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:510,42,0
chr2	233310149	rs790044	A	G	1164.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.010e+00;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=58.19;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=2.18;SOR=0.770;VQSLOD=0.699;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:789,84,0
chr2	233310297	rs796887	T	C	2453.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.570;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=43.28;MQRankSum=-5.860e+00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-2.140e-01;SOR=0.727;VQSLOD=-3.242e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1803,183,0
chr2	233310369	rs790045	T	C	2236.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.147e+00;DB;DP=58;ExcessHet=1.5490;FS=3.551;MQ=44.94;MQRankSum=-7.477e+00;QD=18.04;ReadPosRankSum=1.27;SOR=0.410;VQSLOD=-4.326e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1689,174,0
chr2	233310491	rs809327	C	T	891.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=38.87;MQRankSum=-2.934e+00;QD=21.24;ReadPosRankSum=-7.890e-01;SOR=0.593;VQSLOD=-5.132e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:819,78,0
chr2	233320885	rs3762519	G	A	602.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-3.130e-01;SOR=0.859;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:611,0,798
chr2	233321641	rs61732032	C	T	2381.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.627;DB;DP=183;ExcessHet=3.0103;FS=1.149;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.422;SOR=0.588;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,93:183:99:2390,0,2243
chr2	233321836	rs2272422	G	A	2634.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200e-02;DB;DP=200;ExcessHet=3.0103;FS=0.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=-6.630e-01;SOR=0.744;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,111:200:99:2643,0,1989
chr2	233322424	rs2246004	T	C	4227.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DB;DP=151;ExcessHet=3.9794;FS=2.571;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=1.89;SOR=0.868;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,80:151:99:2166,0,1924
chr2	233322958	rs41265121	T	C	3612.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DB;DP=273;ExcessHet=3.0103;FS=4.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=1.92;SOR=0.497;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,137:273:99:3621,0,3521
chr2	233323177	rs2003780	T	C	9525.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.822;DB;DP=161;ExcessHet=3.9794;FS=0.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=-2.910e-01;SOR=0.727;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,77:161:99:2052,0,2324
chr2	233323205	rs2741269	C	T	3459.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184e+00;DB;DP=140;ExcessHet=3.9794;FS=0.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-2.500e-02;SOR=0.619;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,65:140:99:1695,0,2127
chr2	233344991	rs2741279	T	G	10585.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=0.924;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3019,282,0
chr2	233346074	rs10201913	T	C	1504.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=30;ExcessHet=3.9794;FS=2.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=1.30;SOR=1.061;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:652,0,355
chr2	233346662	rs909432	A	C	7942.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=4.036;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2713,201,0
chr2	233346851	rs1190430	C	T	302.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.870e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-7.780e-01;SOR=0.473;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:144,0,183
chr2	233348647	rs2241755	G	A	3040.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=178;ExcessHet=3.9794;FS=0.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.375;SOR=0.630;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,78:178:99:1674,0,2683
chr2	233349588	rs1529874	G	A	22575.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=1.274;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,235:235:99:7438,705,0
chr2	233350548	rs113660447	G	A	2223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.990e-01;DB;DP=127;ExcessHet=3.9794;FS=5.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=0.401;SOR=1.094;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,53:127:99:1168,0,1939
chr2	233385025	rs2573210	G	A	867.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.68;SOR=2.584;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:96,9,0
chr2	233385396	rs1550094	G	A	10973.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.879e+00;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.37;ReadPosRankSum=-6.120e-01;SOR=0.543;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,115:116:99:3513,305,0
chr2	233385432	rs116445642	C	T	1113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=89;ExcessHet=3.0103;FS=2.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-1.141e+00;SOR=0.426;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,44:89:99:1122,0,1143
chr2	233386229	rs2853444	T	C	11907.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=1.524;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4066,390,0
chr2	233386583	rs2853445	T	C	14486.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.63;DB;DP=197;ExcessHet=3.0103;FS=0.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=0.021;SOR=0.593;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,197:197:99:6324,591,0
chr2	233387007	rs2741297	A	G	1529.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.09;SOR=2.670;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:440,36,0
chr2	233387635	rs733603	A	G	12281.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.29;SOR=0.847;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3917,309,0
chr2	233388686	rs79792358	G	A	1664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DB;DP=135;ExcessHet=3.0103;FS=4.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-6.600e-02;SOR=0.949;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,67:135:99:1673,0,1629
chr2	233388813	rs2741299	T	G	8507.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.52;SOR=0.852;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2553,225,0
chr2	233389918	rs2853447	A	G	5880.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.297;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2016,198,0
chr2	233391965	rs4973537	A	G	261.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:19:219,0,19
chr2	233392020	rs113930536	A	AAAAGAG	745.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=19;ExcessHet=3.9794;FS=2.844;MQ=60.00;MQRankSum=0.00;QD=20.14;ReadPosRankSum=2.68;SOR=1.230;VQSLOD=4.95;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,13:19:99:520,0,202
chr2	233395029	rs12463989	T	C	266.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.241;SOR=0.412;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:124,0,178
chr2	233395974	.	GGGACCCTCTAGGACCGGTGCCCCAAGGTCACAGCT	G	2083.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DP=45;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.22;ReadPosRankSum=-2.760e-01;SOR=0.663;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,23:45:99:868,0,4545
chr2	233396375	rs3762528	T	C	1353.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=115;ExcessHet=3.0103;FS=4.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-3.340e-01;SOR=1.154;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,53:115:99:1362,0,1543
chr2	233398497	rs11385225	A	AG	264.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=1.07;SOR=0.180;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:52:181,0,52
chr2	233400074	rs2767	A	G	2096.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=60;ExcessHet=3.9794;FS=3.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.342;SOR=0.953;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,37:60:99:984,0,618
chr2	233400171	rs114315112	A	G	153.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.217;SOR=1.179;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:162,0,247
chr2	233404294	rs11674608	C	G	702.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.69;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=2.12;SOR=0.557;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:523,0,211
chr2	233404590	rs12996322	G	C	1197.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=1.25;SOR=0.740;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:495,0,280
chr2	233406998	rs1881492	T	G	2531.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.00;SOR=6.770;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:521,36,0
chr2	233407411	rs6761667	T	A	1698.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.097e+00;DB;DP=17;ExcessHet=3.0103;FS=3.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=-1.104e+00;SOR=1.532;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:673,51,0
chr2	233408190	rs34697564	A	ACC,ACCC	6593.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.306e+00;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=-1.581e+00;SOR=0.696;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,8,48:61:61:2443,1379,1196,233,0,61
chr2	233408220	rs10714586	AG	A	10834.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=1.490;VQSLOD=5.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3352,325,0
chr2	233408239	rs2573206	C	G	15193.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.38;SOR=1.471;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4762,420,0
chr2	233408514	rs72991926	A	T	2876.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.10;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=0.462;SOR=0.763;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1452,115,0
chr2	233410098	rs729941	G	C	866.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.100e-02;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.43;ReadPosRankSum=0.598;SOR=1.609;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr2	233410294	rs2099489	C	T	7934.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.427e+00;DB;DP=142;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.954;SOR=0.695;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4395,425,0
chr2	233412820	rs4973539	A	G	1669.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.997;DB;DP=31;ExcessHet=3.9794;FS=1.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=-9.170e-01;SOR=0.929;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:986,93,0
chr2	233413648	rs72991949	G	A	492.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.147;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=0.996;SOR=0.399;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:210,18,0
chr2	233414341	rs4973540	C	T	1021.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.05;ReadPosRankSum=-4.310e-01;SOR=1.426;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:265,21,0
chr2	233414660	rs4973541	G	A	190.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.54;ReadPosRankSum=0.319;SOR=0.330;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr2	233415978	rs11899983	T	C	5189.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473e+00;DB;DP=180;ExcessHet=3.9794;FS=0.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.945;SOR=0.721;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,98:180:99:2361,0,2079
chr2	233421284	rs3830645	CT	C	3343.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.428;DB;DP=25;ExcessHet=3.0103;FS=4.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.33;ReadPosRankSum=2.80;SOR=1.635;VQSLOD=5.73;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:860,75,0
chr2	233429144	rs10603391	GTATTT	G	1139.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.860e-01;DB;DP=9;ExcessHet=3.0103;FS=4.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=-7.980e-01;SOR=2.093;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:28:400,28,0
chr2	233470843	rs7571133	G	A	3194.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e+00;DB;DP=165;ExcessHet=3.9794;FS=4.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.827;SOR=0.475;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,91:165:99:2009,0,1822
chr2	233498506	rs112941683	C	T	434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390e+00;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.59;ReadPosRankSum=1.50;SOR=0.601;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:443,0,640
chr2	233536765	.	C	CA	73.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DP=16;ExcessHet=3.9794;FS=2.584;MQ=59.73;MQRankSum=0.00;QD=2.15;ReadPosRankSum=0.842;SOR=1.396;VQSLOD=4.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,5:16:74:74,0,188
chr2	233536926	rs11684420	T	C	3653.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=145;ExcessHet=3.9794;FS=1.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=1.18;SOR=0.803;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,69:145:99:1732,0,1806
chr2	233537125	rs11550699	A	G	2449.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=92;ExcessHet=3.9794;FS=1.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=1.06;SOR=0.895;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,40:92:99:1090,0,1305
chr2	233599904	rs11555646	A	C	1329.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=50;ExcessHet=3.9794;FS=0.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-5.440e-01;SOR=0.588;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:635,0,614
chr2	233612557	rs3817311	C	T	279.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=-1.350e-01;SOR=0.976;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,114
chr2	233620907	.	C	CT	199.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.490e-01;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.81;MQRankSum=0.00;QD=6.24;ReadPosRankSum=-1.080e-01;SOR=0.656;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,8:10:11:134,11,0
chr2	233633460	rs1801251	G	A	1343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942e+00;DB;DP=56;ExcessHet=3.9794;FS=0.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.482;SOR=0.575;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:550,0,866
chr2	233641083	rs737027	G	C	4547.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147e+00;DB;DP=49;ExcessHet=3.0103;FS=3.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=-1.161e+00;SOR=1.118;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:698,0,684
chr2	233651737	rs10714136	AT	A	608.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.41;SOR=6.091;VQSLOD=6.47;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:155,15,0
chr2	233681512	rs1078323	T	G	156.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-1.026e+00;SOR=0.307;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:165,0,143
chr2	233684402	rs2305141	A	G	556.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=1.78;SOR=0.665;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:174,18,0
chr2	233708806	rs3816334	A	G	4739.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=89;ExcessHet=3.9794;FS=6.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=1.03;SOR=0.412;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,39:89:99:908,0,1394
chr2	233710713	rs4973054	G	C	620.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.17;ReadPosRankSum=-7.120e-01;SOR=3.383;VQSLOD=18.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:60:196,0,60
chr2	233712049	rs2305137	G	A	2111.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=26;ExcessHet=3.9794;FS=3.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=0.760;SOR=0.396;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:369,0,376
chr2	233712226	rs10555297	CACA	C	1734.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641e+00;DB;DP=13;ExcessHet=3.9794;FS=7.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=0.466;SOR=0.169;VQSLOD=5.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:253,0,234
chr2	233712296	rs6437074	G	A	440.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=1.24;SOR=0.582;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:64:193,0,64
chr2	233721455	rs1947105	G	A	7513.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.942;DB;DP=109;ExcessHet=3.9794;FS=1.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=-8.920e-01;SOR=0.810;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,56:109:99:1446,0,1401
chr2	233723182	rs1284	G	A	3715.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=0.724;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1241,133,0
chr2	233740391	rs778337	A	G	551.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.0103;FS=4.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=-1.242e+00;SOR=1.144;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:60:60,0,218
chr2	233757697	rs895432	A	G	18463.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=0.767;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,202:202:99:5802,605,0
chr2	233785015	rs778354	G	A	3229.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=0.973;SOR=0.634;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:491,0,452
chr2	233791608	rs1878289	C	G	1666.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-5.160e-01;SOR=0.768;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:374,0,617
chr2	233791648	rs2592127	G	T	2494.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653e+00;DB;DP=73;ExcessHet=6.9897;FS=4.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.267;SOR=0.463;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,29:73:99:657,0,1298
chr2	233792425	rs2592118	C	T	154.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=8;ExcessHet=4.7712;FS=4.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.619;SOR=0.061;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:57:57,0,210
chr2	233834975	rs4973588	A	G	4072.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=1.743;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1117,108,0
chr2	233835088	rs78336991	T	C	1015.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.640e-01;DB;DP=63;ExcessHet=3.0103;FS=1.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=0.087;SOR=0.954;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,41:63:99:1024,0,529
chr2	233835150	rs75687703	A	C	592.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.910e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.464;SOR=0.565;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:601,0,415
chr2	233835290	rs12694919	T	G	812.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=3.816;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
chr2	233839239	rs6748986	C	T	188.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.94;ReadPosRankSum=-6.000e-02;SOR=1.609;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:58:197,0,58
chr2	233839710	rs75758173	A	C	380.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.322;SOR=0.793;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:389,0,272
chr2	233880271	rs60652209	A	G	5036.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.49;SOR=2.318;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1795,174,0
chr2	233880508	rs62193981	A	G	1876.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=69;ExcessHet=3.9794;FS=2.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.549;SOR=0.992;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,31:69:99:843,0,852
chr2	233880609	rs62193982	G	A	339.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=-2.410e-01;SOR=0.264;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:92:187,0,92
chr2	233899126	rs2233391	C	A	21424.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=533;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.795;SOR=0.732;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:276,257:533:99:6183,0,7167
chr2	233925166	rs1141328	G	A	6837.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=1.904;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3194,303,0
chr2	233925406	rs34218488	T	G	9726.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=149;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.97;ReadPosRankSum=-3.840e-01;SOR=0.564;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,148:149:99:4709,437,0
chr2	233925491	rs4246649	A	G	4740.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.15;SOR=2.566;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1174,101,0
chr2	233986596	rs13013293	C	T	404.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=6;ExcessHet=6.9897;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=0.598;SOR=1.445;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,99
chr2	233987114	rs9288685	T	C	530.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.94;ReadPosRankSum=0.967;SOR=2.419;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:67,0,31
chr2	233990380	.	C	A	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812e+00;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.73;ReadPosRankSum=1.21;SOR=0.941;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:363,0,527
chr2	233990412	rs55913569	C	T	3017.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.810e-01;DB;DP=49;ExcessHet=3.9794;FS=1.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=1.20;SOR=0.857;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,22:49:99:518,0,827
chr2	233994928	rs13388142	C	T	280.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=6.9897;FS=6.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=0.652;SOR=3.056;VQSLOD=17.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,37
chr2	233997595	.	AT	A,ATT	707.51	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.290e-01;DP=46;ExcessHet=3.0103;FS=2.050;MQ=59.84;MQRankSum=0.00;QD=9.07;ReadPosRankSum=0.449;SOR=1.027;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:8,13,9:46:42:322,42,208,253,0,545
chr2	233998481	rs10933436	C	A	251.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.161e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=1.83;SOR=0.247;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:166,0,338
chr2	233998646	rs6738961	C	T	2424.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.540e-01;DB;DP=103;ExcessHet=3.9794;FS=6.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.978;SOR=1.136;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,45:103:99:1135,0,1588
chr2	234054237	rs140053128	T	G	3643.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=76;ExcessHet=6.9897;FS=14.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.074;SOR=1.396;VQSLOD=12.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1033,0,841
chr2	234054873	rs1135173	G	A	10955.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DB;DP=246;ExcessHet=6.9897;FS=1.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.195;SOR=0.580;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:122,124:246:99:3001,0,2978
chr2	234054989	rs36180605	T	G	5022.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=135;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-3.110e-01;SOR=0.658;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,58:135:99:1616,0,2039
chr2	234055004	rs36189208	T	C	3976.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670e-01;DB;DP=119;ExcessHet=6.9897;FS=1.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-4.310e-01;SOR=0.830;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,52:119:99:1378,0,1635
chr2	234055970	rs146744645	C	T	88.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.652;SOR=0.495;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:97:97,0,150
chr2	234066741	rs36142198	A	C	729.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=10;ExcessHet=6.9897;FS=4.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=-5.100e-01;SOR=0.299;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:143,0,175
chr2	234066969	rs36127492	C	G	1860.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DB;DP=54;ExcessHet=6.9897;FS=3.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=0.748;SOR=0.755;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,18:54:99:454,0,944
chr2	234067017	rs148118779	A	G	810.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=42;ExcessHet=3.9794;FS=1.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=1.82;SOR=0.954;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,12:42:99:250,0,860
chr2	234067089	rs36165346	A	G	426.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.35;ReadPosRankSum=0.064;SOR=0.533;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,6:25:99:136,0,523
chr2	234067223	rs36153082	T	C	183.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=1.65;SOR=1.609;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:234067223_T_C:75,0,165:234067223
chr2	234067226	rs36181983	T	C	183.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=1.28;SOR=1.609;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:234067223_T_C:75,0,165:234067223
chr2	234070085	rs35877172	C	T	176.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
chr2	234070171	rs28605534	G	C	273.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=14;ExcessHet=4.7712;FS=3.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-4.310e-01;SOR=0.132;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:219,0,251
chr2	234070190	rs28609111	G	A	327.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855e+00;DB;DP=18;ExcessHet=3.9794;FS=2.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.223e+00;SOR=0.154;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:286,0,338
chr2	234070233	rs28576692	T	C	1066.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=34;ExcessHet=6.9897;FS=4.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=-1.419e+00;SOR=1.516;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:423,0,563
chr2	234070587	rs28751960	A	T	645.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=0.221;SOR=0.379;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:291,0,134
chr2	234072626	rs141642539	T	C	3484.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=3.126;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1038,93,0
chr2	234073243	rs6715810	C	T	891.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.652e+00;DB;DP=38;ExcessHet=3.9794;FS=2.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=1.71;SOR=0.353;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:381,0,879
chr2	234078056	rs11386687	AC	A	3833.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=75;ExcessHet=6.9897;FS=2.230;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.837;SOR=0.850;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,32:75:99:1060,0,1510
chr2	234078406	rs7569837	T	C	171.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.619;SOR=0.551;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr2	234078582	rs10754947	G	A	3543.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.93;DB;DP=74;ExcessHet=6.9897;FS=1.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=1.26;SOR=0.800;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,27:74:99:653,0,1279
chr2	234079551	.	CAA	C	134.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DP=4;ExcessHet=0.7918;FS=4.228;MQ=60.00;MQRankSum=0.00;QD=26.39;ReadPosRankSum=0.431;SOR=2.833;VQSLOD=4.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:4:5:66,5,0
chr2	234091158	rs4571051	T	C	6583.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.560e-01;DB;DP=208;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=-4.000e-03;SOR=0.692;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,97:208:99:2224,0,2696
chr2	234092825	rs6431381	C	G	258.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=0.524;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:119,0,68
chr2	234093035	rs6740918	G	A	3114.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.09;DB;DP=136;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=1.08;SOR=0.670;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,64:136:99:1739,0,1695
chr2	234112649	rs7609436	T	C	6546.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399e+00;DB;DP=90;ExcessHet=3.0103;FS=1.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=-3.270e-01;SOR=0.602;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,33:90:99:829,0,1634
chr2	234113057	rs7346	G	A	4143.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.32;DB;DP=332;ExcessHet=3.0103;FS=2.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.523;SOR=0.571;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:173,159:332:99:4152,0,4290
chr2	234113301	rs9247	C	T	3634.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347e+00;DB;DP=308;ExcessHet=3.0103;FS=3.760;MQ=59.97;MQRankSum=-1.040e+00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=1.03;SOR=0.899;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:161,147:308:99:3643,0,4471
chr2	234113421	rs70958391	C	CGTATGTGT	1695.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DB;DP=84;ExcessHet=3.0103;FS=0.947;MQ=60.00;MQRankSum=0.00;QD=20.18;ReadPosRankSum=-2.249e+00;SOR=0.579;VQSLOD=5.09;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1704,0,3684
chr2	234113545	rs1135727	A	G	755.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-5.970e-01;SOR=0.914;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:177,0,204
chr2	234160345	rs2289477	T	G	1882.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=1.850;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:999,102,0
chr2	234160669	rs10199278	C	G	2290.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.60;SOR=2.948;VQSLOD=20.36;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1173,93,0
chr2	234171812	rs13011156	A	G	1022.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=118;ExcessHet=3.0103;FS=1.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-7.540e-01;SOR=0.914;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,44:118:99:1031,0,1843
chr2	234172846	rs6708373	A	G	671.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.70;SOR=5.670;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:348,24,0
chr2	234172915	rs10165561	G	C	202.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.49;SOR=3.611;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr2	234173503	rs12994997	G	A	522.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=2.985;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:284,21,0
chr2	234178453	rs12994971	C	T	482.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=3.767;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
chr2	234178624	rs35705047	CT	C	351.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=29;ExcessHet=6.9897;FS=4.284;MQ=59.84;MQRankSum=0.00;QD=4.40;ReadPosRankSum=0.123;SOR=1.122;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,7:29:79:79,0,434
chr2	234181593	rs2289475	G	C	4224.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.280e-01;DB;DP=55;ExcessHet=3.0103;FS=1.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=-4.940e-01;SOR=0.849;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1904,165,0
chr2	234181848	rs2289474	C	T	301.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.30;SOR=4.407;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr2	234182240	rs2289472	C	T	1862.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=2.303;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:56:640,56,0
chr2	234183368	rs2241880	A	G	4486.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.41;SOR=0.882;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2389,206,0
chr2	234183468	rs2241879	G	A	2966.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=1.402;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1397,137,0
chr2	234184417	rs3792109	G	A	10363.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.39;SOR=0.744;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4609,426,0
chr2	234185999	rs3816234	G	A	1708.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.47;SOR=7.569;VQSLOD=23.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:592,42,0
chr2	234186489	rs2241877	A	G	1267.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.537e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.51;ReadPosRankSum=1.28;SOR=3.202;VQSLOD=19.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:345,27,0
chr2	234197717	rs4663136	C	G	1682.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.75;DB;DP=17;ExcessHet=3.0103;FS=4.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.00;ReadPosRankSum=0.182;SOR=2.878;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:697,51,0
chr2	234199292	rs34378540	GA	G	413.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.120e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=-1.981e+00;SOR=2.985;VQSLOD=5.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr2	234203199	.	G	GA	110.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014e+00;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.19;ReadPosRankSum=0.233;SOR=0.446;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:119,0,182
chr2	234227523	rs2304777	A	G	14799.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.300e+00;DB;DP=186;ExcessHet=3.0103;FS=0.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=-2.660e-01;SOR=0.625;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5689,558,0
chr2	234227693	rs2304776	C	T	2988.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=4.407;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1642,129,0
chr2	234235470	rs1000547	A	G	368.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.838e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.703;SOR=0.307;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:139,12,0
chr2	234235749	rs2304774	G	C	5623.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=1.518;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2530,246,0
chr2	234237387	rs12997325	A	G	1782.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.83;ReadPosRankSum=0.473;SOR=2.970;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:980,75,0
chr2	234238254	rs745498	T	G	5928.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.23;DB;DP=80;ExcessHet=3.0103;FS=0.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=-9.900e-02;SOR=0.818;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2461,240,0
chr2	234240684	rs2241875	G	A	249.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=-1.068e+00;SOR=1.022;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr2	234243322	rs6431310	T	C	70.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.05;ReadPosRankSum=1.04;SOR=0.223;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:76,0,62
chr2	234247627	rs2241874	T	C	1192.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.238;SOR=0.841;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:235,0,458
chr2	234249385	rs10803624	C	T	919.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=1.72;SOR=1.075;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:205,0,148
chr2	234249397	rs35743911	TTG	T	682.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.32;ReadPosRankSum=1.38;SOR=1.329;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:18:168,0,18
chr2	234251322	rs3792091	T	G	283.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=-4.310e-01;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:114,0,29
chr2	234255145	rs35371121	A	C	950.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=87;ExcessHet=3.0103;FS=0.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.005e+00;SOR=0.522;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,37:87:99:959,0,1213
chr2	234255547	rs1046974	G	A	2694.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DB;DP=63;ExcessHet=6.9897;FS=0.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.100;SOR=0.643;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,24:63:99:566,0,1022
chr2	234294561	rs3075537	T	TTC	10526.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.431e+00;DB;DP=116;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=-1.167e+00;SOR=0.698;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,116:116:99:5257,352,0
chr2	234294791	rs838716	G	C	2118.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.000e-01;DB;DP=42;ExcessHet=1.5490;FS=0.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=-1.672e+00;SOR=0.564;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1306,124,0
chr2	234296650	rs838718	G	A	257.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=1.15;SOR=1.022;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:17:188,0,17
chr2	234297156	rs838719	T	C	118.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-4.840e-01;SOR=0.941;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:127,0,102
chr2	234358286	rs2242100	C	T	947.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=6;ExcessHet=3.0103;FS=5.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.69;ReadPosRankSum=1.04;SOR=3.461;VQSLOD=16.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:97:100,0,97
chr2	234375944	rs2305540	C	T	539.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=-3.950e-01;SOR=1.426;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:191,0,108
chr2	234400249	rs3075066	CGTGTGT	C	253.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.56;SOR=3.912;VQSLOD=4.78;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	234438246	rs56828432	C	CT	3880.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.772;DB;DP=53;ExcessHet=3.9794;FS=4.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.060;SOR=0.436;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1952,159,0
chr2	234438354	rs12692193	C	T	835.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.067e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=1.25;SOR=1.371;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:477,36,0
chr2	234442437	rs11332355	CA	C	364.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.581;SOR=0.826;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:113,12,0
chr2	234449316	rs2167884	G	A	4847.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.670e-01;DB;DP=84;ExcessHet=3.9794;FS=4.253;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-6.000e-02;SOR=0.481;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2458,249,0
chr2	234449462	rs1545525	T	C	1596.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.50;DB;DP=19;ExcessHet=3.9794;FS=3.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=1.78;SOR=1.329;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:711,57,0
chr2	234450822	rs1901812	T	C	397.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:211,18,0
chr2	234457900	rs3965793	T	A	680.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.837e+00;DB;DP=20;ExcessHet=1.5490;FS=3.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=-3.630e-01;SOR=0.293;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:576,59,0
chr2	234469664	rs6753062	T	C	1760.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=32;ExcessHet=3.9794;FS=0.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.364;SOR=0.779;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:985,96,0
chr2	234526871	rs1042597	C	G	10726.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.893e+00;DB;DP=229;ExcessHet=1.5490;FS=0.662;MQ=57.61;MQRankSum=-6.720e+00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-7.900e-01;SOR=0.811;VQSLOD=-1.974e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,229:229:99:8043,688,0
chr2	234527397	rs13027376	G	A	927.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.50;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=0.427;SOR=1.981;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:504,36,0
chr2	234545039	rs149250772	A	AT	5469.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=118;ExcessHet=0.4576;FS=3.163;MQ=54.37;MQRankSum=-1.428e+00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=0.872;SOR=1.516;VQSLOD=0.561;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:9,101:118:99:2516,138,0
chr2	234621780	rs3755323	T	C	2283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.160e-01;DB;DP=107;ExcessHet=3.0103;FS=3.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=-3.880e-01;SOR=0.891;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,59:107:99:0|1:234621780_T_C:2292,0,2401:234621780
chr2	234621787	rs3755322	C	G	2267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DB;DP=106;ExcessHet=3.0103;FS=1.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=-9.500e-02;SOR=0.914;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,58:106:99:0|1:234621780_T_C:2276,0,2404:234621780
chr2	234621825	rs3755321	T	C	1128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757e+00;DB;DP=94;ExcessHet=3.0103;FS=5.235;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.378;SOR=1.228;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,47:94:99:1137,0,1330
chr2	234622061	rs3755320	C	A	3494.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.483e+00;DB;DP=277;ExcessHet=3.0103;FS=1.461;MQ=59.80;MQRankSum=-1.366e+00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-1.796e+00;SOR=0.808;VQSLOD=1.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:134,143:277:99:3503,0,3343
chr2	234622110	rs12475068	C	G	4209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=333;ExcessHet=3.0103;FS=0.826;MQ=59.84;MQRankSum=0.013;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=2.21;SOR=0.753;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:165,168:333:99:4218,0,3820
chr2	234622282	rs17868333	C	T	1867.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=155;ExcessHet=3.0103;FS=2.910;MQ=58.88;MQRankSum=-4.469e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-5.620e-01;SOR=0.987;VQSLOD=-1.252e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:86,69:155:99:1876,0,2288
chr2	234622294	rs17863790	C	T	1811.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DB;DP=154;ExcessHet=3.0103;FS=3.868;MQ=58.29;MQRankSum=-5.241e+00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-3.350e-01;SOR=1.038;VQSLOD=-2.059e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:87,67:154:99:1820,0,2369
chr2	234622310	rs17862867	C	T	1484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-02;DB;DP=131;ExcessHet=3.0103;FS=2.237;MQ=57.89;MQRankSum=-6.144e+00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.604;SOR=0.895;VQSLOD=-1.723e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:76,55:131:99:1493,0,2069
chr2	234622412	rs3892170	G	C	1423.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=52.97;MQRankSum=-9.634e+00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-1.700e+00;SOR=0.662;VQSLOD=-4.936e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:70,40:110:99:0|1:234622412_G_C:1432,0,2878:234622412
chr2	234622742	rs17862870	G	A	161.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.790e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-6.080e-01;SOR=1.179;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:170,0,100
chr2	234626199	rs3806591	T	C	373.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.222e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=0.107;SOR=0.307;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:382,0,302
chr2	234627248	rs3732219	C	T	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.499e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=-2.450e-01;SOR=0.793;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:324,0,318
chr2	234627304	rs3732218	G	A	997.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596e+00;DB;DP=59;ExcessHet=3.0103;FS=1.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=-7.790e-01;SOR=1.022;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,33:59:99:1006,0,794
chr2	234627608	rs2011425	T	G	1984.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896e+00;DB;DP=126;ExcessHet=3.0103;FS=1.484;MQ=59.96;MQRankSum=1.15;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-2.240e-01;SOR=0.914;VQSLOD=1.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:55,71:126:99:1993,0,1464
chr2	234627668	rs45621441	C	T	1419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.140e-01;DB;DP=81;ExcessHet=3.0103;FS=2.996;MQ=60.00;MQRankSum=0.00;QD=17.52;ReadPosRankSum=0.507;SOR=0.651;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,47:81:99:1428,0,922
chr2	234627914	rs12468274	T	C	4033.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=322;ExcessHet=3.0103;FS=0.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.134;SOR=0.721;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:162,160:322:99:4042,0,4071
chr2	234627937	rs2011404	T	C	24620.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=331;ExcessHet=3.0103;FS=1.453;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=-5.170e-01;SOR=0.539;VQSLOD=6.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,331:331:99:10010,990,0
chr2	234628270	rs3732217	G	A	2331.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DB;DP=228;ExcessHet=3.0103;FS=1.031;MQ=58.20;MQRankSum=-3.366e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=1.57;SOR=0.612;VQSLOD=-6.825e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:131,97:228:99:2340,0,3381
chr2	234628376	rs2011219	C	T	1224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630e-01;DB;DP=123;ExcessHet=3.0103;FS=3.798;MQ=55.99;MQRankSum=-5.186e+00;QD=9.95;ReadPosRankSum=2.59;SOR=1.075;VQSLOD=-4.249e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:77,46:123:99:1233,0,2219
chr2	234628529	rs871514	T	C	228.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.00;SOR=0.512;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:146,0,208
chr2	234628576	rs904855	G	C	61.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=1.83;SOR=0.307;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:70:70,0,137
chr2	234637707	rs3806596	T	C	2333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DB;DP=83;ExcessHet=3.9794;FS=5.164;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=1.58;SOR=1.120;VQSLOD=6.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,56:83:99:1330,0,620
chr2	234637803	rs3821242	T	C	3298.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510e-01;DB;DP=111;ExcessHet=3.9794;FS=3.063;MQ=59.51;MQRankSum=-8.230e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=1.81;SOR=0.513;VQSLOD=0.446;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,65:111:99:1709,0,1153
chr2	234637853	rs6706232	G	A	3376.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.239e+00;DB;DP=128;ExcessHet=3.9794;FS=2.173;MQ=59.43;MQRankSum=-8.520e-01;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.289;SOR=0.548;VQSLOD=0.957;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:55,73:128:99:1635,0,1405
chr2	234638249	rs7574296	A	G	7786.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438e+00;DB;DP=300;ExcessHet=3.9794;FS=4.050;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-4.320e-01;SOR=0.752;VQSLOD=6.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:156,144:300:99:3396,0,3922
chr2	234638690	rs2361501	A	T	2035.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.773;DB;DP=57;ExcessHet=3.9794;FS=1.371;MQ=59.86;MQRankSum=1.19;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.842;SOR=0.835;VQSLOD=1.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,31:57:99:706,0,792
chr2	234651800	rs3796088	T	C	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606e+00;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-2.990e-01;SOR=0.551;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:567,0,732
chr2	234652482	rs62191918	C	T	1890.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e-01;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.173;SOR=0.728;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,78:150:99:1899,0,1727
chr2	234656517	rs12466997	T	C	1905.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782e+00;DB;DP=140;ExcessHet=3.0103;FS=3.067;MQ=59.98;MQRankSum=1.14;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=2.15;SOR=0.452;VQSLOD=2.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:62,78:140:99:1914,0,1579
chr2	234663649	rs10929301	C	G	2011.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.603e+00;DB;DP=117;ExcessHet=3.9794;FS=1.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.109;SOR=0.584;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,55:117:99:1260,0,1580
chr2	234669074	rs34526305	C	T	1804.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891e+00;DB;DP=158;ExcessHet=3.0103;FS=1.266;MQ=59.94;MQRankSum=-1.039e+00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-7.050e-01;SOR=0.586;VQSLOD=1.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:83,75:158:99:1813,0,2209
chr2	234676413	rs2302538	T	C	886.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355e+00;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-5.510e-01;SOR=0.651;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,33:52:99:895,0,503
chr2	234681416	rs10929303	T	C	292.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.39;SOR=4.407;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr2	234688036	rs6431631	C	A	2691.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=0.947;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1323,135,0
chr2	234698097	rs12468017	T	C	1344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=103;ExcessHet=3.0103;FS=1.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-9.600e-02;SOR=0.919;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,49:103:99:1353,0,1429
chr2	234702212	rs6738710	G	C	3522.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.88;DB;DP=52;ExcessHet=1.5490;FS=3.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=0.119;SOR=1.609;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:912,0,657
chr2	234702459	rs1500481	T	C	7622.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=190;ExcessHet=1.5490;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=-5.720e-01;SOR=0.639;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,99:190:99:2667,0,2183
chr2	234702520	rs17868350	C	T	2528.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.493e+00;DB;DP=71;ExcessHet=3.9794;FS=0.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-3.540e-01;SOR=0.536;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,42:71:99:1303,0,943
chr2	234702905	rs10169532	C	T	2158.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.589e+00;DB;DP=31;ExcessHet=1.5490;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=0.467;SOR=0.255;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:594,0,421
chr2	234703136	rs6431634	T	C	5345.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.119e+00;DB;DP=168;ExcessHet=1.5490;FS=0.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=-1.682e+00;SOR=0.660;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,80:168:99:1813,0,2278
chr2	234704150	rs2885297	T	C	6468.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.710e+00;DB;DP=74;ExcessHet=3.0103;FS=4.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=0.108;SOR=0.425;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2303,221,0
chr2	234704318	rs2361503	A	G	8097.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=187;ExcessHet=1.5490;FS=1.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=1.64;SOR=0.809;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,91:187:99:2301,0,2347
chr2	234704495	rs11563248	T	G	5382.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.22;DB;DP=108;ExcessHet=1.5490;FS=2.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=-9.010e-01;SOR=0.931;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,43:108:99:1363,0,1823
chr2	234704690	rs759173	T	C	12358.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.764e+00;DB;DP=187;ExcessHet=3.0103;FS=0.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=-2.530e-01;SOR=0.581;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,187:187:99:5723,561,0
chr2	234704746	rs759172	G	C	9597.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.333;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=-9.400e-01;SOR=0.679;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:4233,357,0
chr2	234707341	rs1500479	T	C	3523.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.74;SOR=1.295;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1252,126,0
chr2	234708428	rs13013882	G	A	2676.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.292e+00;DB;DP=20;ExcessHet=3.0103;FS=1.437;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=0.384;SOR=0.412;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:741,60,0
chr2	234708570	rs11563069	G	A	7245.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.37;SOR=0.702;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2014,201,0
chr2	234708629	rs13018934	G	A	5889.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=0.887;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1728,165,0
chr2	234708720	rs2041652	T	G	5455.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.86;SOR=0.720;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1537,126,0
chr2	234708824	rs55686299	T	G	940.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=75;ExcessHet=3.0103;FS=1.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=1.10;SOR=0.473;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,37:75:99:949,0,920
chr2	234712921	rs10175949	G	A	3661.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.17;SOR=0.820;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1004,84,0
chr2	234713812	rs2041651	G	T	10738.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=0.822;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3217,334,0
chr2	234716027	rs112570954	T	A	701.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=-1.990e-01;SOR=0.627;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:710,0,456
chr2	234716827	rs10203123	A	C	676.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.656;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=-1.500e-02;SOR=1.101;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:224,18,0
chr2	234717448	rs12053445	T	G	396.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=-2.310e-01;SOR=1.473;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr2	234717498	rs12053058	G	C	1170.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=4.479;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr2	234717516	rs12053059	G	A	1527.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=2.636;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:292,24,0
chr2	234717669	rs10803663	A	G	6536.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.01;SOR=2.073;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1795,180,0
chr2	234720734	rs988344	A	C	5834.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=1.141;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1708,162,0
chr2	234720967	rs6735725	T	C	743.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.51;SOR=4.407;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:183,15,0
chr2	234725502	rs726016	T	C	7052.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=0.765;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1935,198,0
chr2	234727250	rs719419	T	G	5913.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.832;DB;DP=70;ExcessHet=3.0103;FS=4.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=0.566;SOR=1.146;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2094,210,0
chr2	234727615	rs6431636	G	A	552.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=1.473;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr2	234727986	rs6754859	C	T	8596.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059e+00;DB;DP=134;ExcessHet=3.0103;FS=6.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=0.141;SOR=0.653;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4094,402,0
chr2	234728078	rs1500480	T	C	7999.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=100;ExcessHet=3.0103;FS=4.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.61;ReadPosRankSum=0.147;SOR=1.161;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3220,299,0
chr2	234731883	rs7603146	A	G	523.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.845;SOR=0.955;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:116,0,64
chr2	234732317	rs11676792	A	G	2108.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=47;ExcessHet=6.9897;FS=0.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-1.696e+00;SOR=0.633;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:542,0,676
chr2	234740275	rs11562980	T	C	1516.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.433e+00;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-9.050e-01;SOR=0.744;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,56:122:99:1525,0,2000
chr2	234749151	rs213555	C	T	2233.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.571e+00;DB;DP=48;ExcessHet=6.9897;FS=4.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-5.490e-01;SOR=0.325;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:820,0,777
chr2	234749258	rs10511	T	C	2328.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.256e+00;DB;DP=180;ExcessHet=3.0103;FS=5.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-6.660e-01;SOR=0.400;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,101:180:99:2337,0,2041
chr2	234749354	rs12582	G	A	1937.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.733e+00;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-1.703e+00;SOR=0.740;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,79:171:99:1946,0,2566
chr2	234749780	rs3821238	G	C	1080.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=1.01;SOR=0.746;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,47:113:99:1089,0,1722
chr2	234750542	rs3732215	G	C	5079.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.109;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=0.593;SOR=0.674;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2285,207,0
chr2	234750831	rs3806589	T	C	6986.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;DB;DP=100;ExcessHet=3.9794;FS=3.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=1.07;SOR=0.531;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3138,300,0
chr2	234752638	rs7583713	C	T	893.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.179;DB;DP=10;ExcessHet=3.9794;FS=5.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=0.691;SOR=0.119;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:353,30,0
chr2	234753008	rs169925	G	A	4555.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.300e-02;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=-7.600e-01;SOR=0.742;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1579,138,0
chr2	234754273	rs2302156	T	C	1371.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.110e+00;DB;DP=10;ExcessHet=3.0103;FS=5.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.50;ReadPosRankSum=-4.850e-01;SOR=0.138;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:320,30,0
chr2	234754506	rs2302155	G	A	4169.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.235;DB;DP=61;ExcessHet=3.9794;FS=3.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=-2.530e-01;SOR=1.017;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1839,182,0
chr2	234756240	rs2286431	G	A	3149.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=58;ExcessHet=3.9794;FS=3.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.086;SOR=1.000;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1929,173,0
chr2	234761104	rs148154454	G	A	577.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=66;ExcessHet=3.0103;FS=2.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=1.20;SOR=1.089;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,24:66:99:586,0,1007
chr2	234761225	rs2286430	C	T	8197.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=121;ExcessHet=3.9794;FS=1.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.240;SOR=0.788;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:4006,363,0
chr2	234761355	rs554699	G	A	7556.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.830e-01;DB;DP=89;ExcessHet=3.0103;FS=3.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=-2.190e-01;SOR=0.916;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2712,265,0
chr2	234762480	rs626110	A	T	8501.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.311;DB;DP=115;ExcessHet=3.0103;FS=0.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=0.574;SOR=0.673;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3515,345,0
chr2	234762738	rs917433	A	T	541.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=6;ExcessHet=3.9794;FS=2.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.80;ReadPosRankSum=1.01;SOR=2.066;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:216,18,0
chr2	234762898	rs501145	C	T	793.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=0.366;SOR=0.446;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:367,27,0
chr2	234762924	rs917432	C	G	1083.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.120e-01;DB;DP=13;ExcessHet=3.9794;FS=6.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.852;SOR=2.624;VQSLOD=18.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:492,39,0
chr2	234763226	rs503913	C	T	6727.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.230e-01;DB;DP=113;ExcessHet=3.9794;FS=0.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=-2.640e-01;SOR=0.652;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3405,338,0
chr2	234775941	rs213545	A	G	2162.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.725e+00;DB;DP=18;ExcessHet=3.0103;FS=1.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.09;ReadPosRankSum=-5.560e-01;SOR=0.345;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:721,54,0
chr2	234846198	rs1019103	G	A	2213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=3.370;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:416,33,0
chr2	234916771	.	AT	A	187.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DP=50;ExcessHet=3.9794;FS=2.123;MQ=59.95;MQRankSum=0.00;QD=1.59;ReadPosRankSum=-4.660e-01;SOR=0.915;VQSLOD=5.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,12:50:99:185,0,702
chr2	234967539	rs593668	T	A	8830.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=0.894;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2908,287,0
chr2	235950187	rs1469375	T	C	13836.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.025e+00;DB;DP=155;ExcessHet=3.0103;FS=0.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=-1.770e+00;SOR=0.590;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,78:155:99:1890,0,2055
chr2	235960841	rs56943936	CCT	C	122.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=1.179;VQSLOD=5.77;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr2	235960893	rs10174126	T	C	148.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.41;SOR=1.609;VQSLOD=19.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr2	235961010	rs6739888	C	T	187.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.314;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=0.197;SOR=1.140;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:162,18,0
chr2	235961524	rs28403579	C	T	192.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=-1.944e+00;SOR=0.693;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:201,0,184
chr2	235961953	rs28403580	G	A	804.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.570e-01;DB;DP=61;ExcessHet=3.0103;FS=0.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.975;SOR=0.507;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:813,0,739
chr2	236403607	rs3738998	C	A	2301.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.461e+00;DB;DP=43;ExcessHet=6.9897;FS=7.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.116;SOR=0.115;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:666,0,836
chr2	236433331	rs11689907	T	C	3042.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.042e+00;DB;DP=41;ExcessHet=3.0103;FS=6.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-1.253e+00;SOR=1.393;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1271,123,0
chr2	236433390	rs10207027	G	A	2084.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=1.926;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:689,60,0
chr2	236685678	rs62190872	G	C	1559.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DB;DP=132;ExcessHet=3.0103;FS=1.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=3.28;SOR=0.545;VQSLOD=21.44;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:71,61:132:99:1568,0,1868
chr2	236716006	rs8178996	T	A	3041.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;DB;DP=99;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=1.86;SOR=0.702;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,56:99:99:1573,0,1166
chr2	236761396	rs13006916	C	T	3672.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=61;ExcessHet=3.9794;FS=5.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=0.479;SOR=0.593;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,27:61:99:703,0,791
chr2	236761414	rs142341634	C	CCAGG	1193.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.860e-01;DB;DP=57;ExcessHet=3.0103;FS=1.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=-1.146e+00;SOR=1.002;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,31:57:99:1202,0,999
chr2	236817336	rs57795387	CT	C	1738.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;DB;DP=28;ExcessHet=3.9794;FS=2.797;MQ=60.00;MQRankSum=0.00;QD=14.14;ReadPosRankSum=0.581;SOR=1.042;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:28:83:701,83,0
chr2	236817629	rs4663215	C	T	1571.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.850e-01;DB;DP=18;ExcessHet=3.0103;FS=5.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.58;ReadPosRankSum=-3.310e-01;SOR=3.258;VQSLOD=17.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:751,54,0
chr2	236839731	rs35953119	G	A	587.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.400e-02;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=0.884;SOR=1.708;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr2	236877066	rs35278826	AT	A	313.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.490e-01;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.48;ReadPosRankSum=0.371;SOR=0.527;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:13:33:149,0,33
chr2	236877473	rs13428207	T	C	308.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.833e+00;DB;DP=24;ExcessHet=3.0103;FS=2.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-1.449e+00;SOR=1.609;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:317,0,401
chr2	236923361	rs35361765	C	CT	1249.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.770e-01;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=59.86;MQRankSum=0.00;QD=10.96;ReadPosRankSum=0.174;SOR=0.647;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,21:45:99:420,0,558
chr2	236957822	rs2034648	G	A	13992.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DB;DP=273;ExcessHet=3.9794;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=1.26;SOR=0.591;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,135:273:99:3121,0,3302
chr2	237105050	rs55818776	C	T	256.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=4;ExcessHet=1.5490;FS=9.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.00;SOR=3.039;VQSLOD=14.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:128,12,0
chr2	237146290	rs11680052	C	T	147.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.60;ReadPosRankSum=0.674;SOR=0.941;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr2	237150166	rs2015983	A	C	4172.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.730e-01;DB;DP=71;ExcessHet=3.9794;FS=0.472;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.079;SOR=0.751;VQSLOD=6.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2172,213,0
chr2	237150311	rs6431443	T	C	660.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=-7.090e-01;SOR=0.504;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:487,39,0
chr2	237186325	rs1453308	G	A	38	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.00;SOR=0.693;VQSLOD=15.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	237349917	rs72988868	G	A	55.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,151
chr2	237489297	rs35767135	C	T	2227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=171;ExcessHet=3.0103;FS=2.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.399;SOR=0.965;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,80:171:99:2236,0,2394
chr2	237489904	rs1045879	C	T	6753.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.065e+00;DB;DP=175;ExcessHet=6.9897;FS=1.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-4.810e-01;SOR=0.842;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,92:175:99:2471,0,2396
chr2	237996433	rs1137555	G	A	109.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:117,0,30
chr2	238005370	rs11333953	GT	G	3577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.664e+00;DB;DP=58;ExcessHet=6.9897;FS=3.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=0.210;SOR=0.464;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,40:58:99:1303,0,499
chr2	238005572	rs28631187	G	A	1023.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.204;SOR=0.723;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1032,0,958
chr2	238006229	rs72975809	G	T	759.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.399e+00;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=1.33;SOR=0.732;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,35:76:99:768,0,1025
chr2	238166147	rs4377288	G	A	3435.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=0.711;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:979,102,0
chr2	238233483	rs13032404	G	A	2932.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348e+00;DB;DP=78;ExcessHet=6.9897;FS=2.364;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-1.260e-01;SOR=0.880;VQSLOD=6.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,39:78:99:891,0,1012
chr2	238233665	rs72984147	T	A	133.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:142,0,27
chr2	238243145	rs111578971	C	CTGT	99.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DB;DP=9;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.732;SOR=1.911;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:99:108,0,246
chr2	238243292	rs1131296	G	A	1050.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-02;DB;DP=49;ExcessHet=3.9794;FS=4.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.230;SOR=1.196;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:574,0,593
chr2	238243464	rs2270669	C	G	4723.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=0.513;SOR=0.686;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2028,189,0
chr2	238244526	rs11687877	A	G	30.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=56.57;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=6.05;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=-1.538e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:39:39,0,114
chr2	238244575	rs4233631	T	C	1911.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.600e-02;DB;DP=13;ExcessHet=3.0103;FS=3.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=0.359;SOR=1.609;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:452,39,0
chr2	238244781	rs11690358	T	C	1085.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198e+00;DB;DP=76;ExcessHet=3.0103;FS=0.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-2.670e-01;SOR=0.574;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,43:76:99:1094,0,821
chr2	238244863	rs35879189	TGCA	T	1692.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=89;ExcessHet=3.0103;FS=1.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-1.047e+00;SOR=0.954;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,44:89:99:1701,0,1757
chr2	238244923	rs11683438	C	T	1728.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.35;DB;DP=131;ExcessHet=3.0103;FS=7.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=1.78;SOR=1.420;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,57:131:99:1737,0,2027
chr2	238244963	rs6728818	A	G	12880.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=181;ExcessHet=3.0103;FS=1.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.40;ReadPosRankSum=0.415;SOR=0.916;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5733,543,0
chr2	238249108	rs61729844	T	C	643.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=63;ExcessHet=3.0103;FS=1.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=-4.450e-01;SOR=0.930;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,27:63:99:652,0,895
chr2	238249630	rs4433949	C	T	10779.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=266;ExcessHet=6.9897;FS=0.521;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.187;SOR=0.634;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,129:266:99:3326,0,3302
chr2	238249717	rs34558385	G	A	2455.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441e+00;DB;DP=206;ExcessHet=3.0103;FS=1.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=1.09;SOR=0.588;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,102:206:99:2464,0,2673
chr2	238251035	rs10202434	T	G	57.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,73
chr2	238258814	rs3790993	C	G	8954.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=246;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-1.790e-01;SOR=0.718;VQSLOD=6.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,120:246:99:3155,0,3146
chr2	238259675	rs3790995	G	A	3106.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=78;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=1.23;SOR=0.689;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,41:78:99:1008,0,950
chr2	238260829	rs3828135	G	T	227.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.530e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-5.420e-01;SOR=1.828;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr2	238261112	rs4663726	G	A	6036.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.234e+00;DB;DP=93;ExcessHet=1.5490;FS=0.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=-6.540e-01;SOR=0.627;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,93:93:99:1|1:238261112_G_A:4187,283,0:238261112
chr2	238261113	rs4663727	C	A	6036.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.603e+00;DB;DP=94;ExcessHet=1.5490;FS=0.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.46;ReadPosRankSum=-1.083e+00;SOR=0.602;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,94:94:99:1|1:238261112_G_A:4187,283,0:238261112
chr2	238261744	rs7605340	T	C	255.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.61;SOR=2.303;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:238261744_T_C:270,18,0:238261744
chr2	238261746	rs7605341	T	G	255.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=33.65;SOR=2.303;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:238261744_T_C:270,18,0:238261744
chr2	238261805	.	C	T	59.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.41;ReadPosRankSum=-4.140e-01;SOR=0.307;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:68:68,0,136
chr2	238265661	rs66524529	A	C	61.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-5.240e-01;SOR=2.245;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:70:0|1:238265661_A_C:70,0,77:238265661
chr2	238265684	rs10929228	C	T	188.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.61;ReadPosRankSum=-6.740e-01;SOR=0.269;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:238265661_A_C:136,12,0:238265661
chr2	238266248	rs7577192	G	C	983.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DB;DP=33;ExcessHet=3.9794;FS=2.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.199;SOR=0.399;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:525,0,560
chr2	238266633	rs4663730	G	A	1350.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=1.40;SOR=0.693;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,26:53:99:743,0,688
chr2	238267058	rs4663731	G	A	2642.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.11;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=-5.930e-01;SOR=0.802;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,19:29:99:617,0,238
chr2	238271786	rs11287247	GC	G	1592.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e-01;DB;DP=34;ExcessHet=3.0103;FS=1.077;MQ=59.74;MQRankSum=0.00;QD=18.73;ReadPosRankSum=1.39;SOR=0.478;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,18:34:99:395,0,354
chr2	238305211	rs1553032	C	T	487.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.82;ReadPosRankSum=0.00;SOR=3.912;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr2	238443025	rs13011946	C	T	62.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.65;SOR=0.446;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,75
chr2	238451167	rs28418886	G	A	1128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800e-01;DB;DP=93;ExcessHet=3.0103;FS=1.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=1.27;SOR=0.495;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,49:93:99:1137,0,1037
chr2	238503667	rs11889519	T	C	599.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=32;ExcessHet=3.0103;FS=1.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=0.361;SOR=1.519;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:608,0,391
chr2	238642279	rs56258338	C	T	610.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-8.250e-01;SOR=0.693;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:619,0,608
chr2	238642648	rs3769079	C	A	60.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:69,0,34
chr2	238643990	rs3769077	G	A	1922.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.166;DB;DP=116;ExcessHet=3.0103;FS=0.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.57;ReadPosRankSum=-2.290e-01;SOR=0.608;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,73:116:99:1931,0,1008
chr2	238644136	rs3820810	A	G	600.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=40;ExcessHet=3.0103;FS=11.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-1.003e+00;SOR=2.765;VQSLOD=13.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:609,0,564
chr2	238648144	rs3769072	C	G	1534.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430e-01;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.70;ReadPosRankSum=0.302;SOR=0.668;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:316,0,309
chr2	238656870	rs2304430	T	G	878.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=53;ExcessHet=3.9794;FS=1.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=0.569;SOR=0.487;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,19:53:99:446,0,855
chr2	238656936	rs2304431	A	G	1286.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.490e-01;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=0.563;SOR=0.728;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,27:71:99:521,0,1036
chr2	238657746	rs3769064	A	G	286.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.00;SOR=1.112;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:92:92,0,138
chr2	238658030	rs200556733	TA	T	719.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.690e-01;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.08;ReadPosRankSum=1.26;SOR=0.681;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,18:46:99:358,0,611
chr2	238658085	rs2304432	C	G	641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=1.56;SOR=0.573;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:298,0,658
chr2	238658176	rs2304433	C	T	251.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.331e+00;DB;DP=15;ExcessHet=3.9794;FS=2.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.37;ReadPosRankSum=1.68;SOR=0.269;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:55:55,0,396
chr2	238658199	rs2304434	C	T	225.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=1.29;SOR=1.136;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:49:49,0,277
chr2	238659708	rs3769062	C	T	875.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=0.962;SOR=0.495;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:286,0,438
chr2	238659963	rs3835808	TAA	T	552.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DB;DP=35;ExcessHet=3.0103;FS=1.480;MQ=60.00;MQRankSum=0.00;QD=15.78;ReadPosRankSum=0.248;SOR=1.071;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,18:35:99:561,0,524
chr2	238661832	rs733579	T	C	330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.545;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.269;SOR=0.976;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:339,0,407
chr2	238661870	rs3832061	GT	G	568.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DB;DP=41;ExcessHet=3.0103;FS=1.565;MQ=60.00;MQRankSum=0.00;QD=13.86;ReadPosRankSum=-1.351e+00;SOR=1.179;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,24:41:99:577,0,369
chr2	238662154	rs3769061	A	G	710.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058e+00;DB;DP=44;ExcessHet=3.0103;FS=1.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=1.27;SOR=0.399;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,27:44:99:719,0,446
chr2	238667501	rs3215064	G	GA	415.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344e+00;DB;DP=26;ExcessHet=3.9794;FS=1.352;MQ=60.00;MQRankSum=0.00;QD=8.14;ReadPosRankSum=-5.200e-02;SOR=0.416;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,11:26:99:241,0,373
chr2	238668802	rs3213868	A	G	1658.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750e-01;DB;DP=104;ExcessHet=3.0103;FS=7.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=1.96;SOR=0.277;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,64:104:99:1667,0,961
chr2	238671117	rs734388	A	G	669.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032e+00;DB;DP=61;ExcessHet=3.0103;FS=1.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-1.997e+00;SOR=0.947;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,27:61:99:678,0,901
chr2	238671170	rs3739047	G	A	748.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=68;ExcessHet=3.0103;FS=0.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-6.200e-02;SOR=0.826;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:757,0,908
chr2	238671190	rs3739046	A	G	1391.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;DB;DP=73;ExcessHet=3.0103;FS=0.890;MQ=60.00;MQRankSum=0.00;QD=19.06;ReadPosRankSum=-5.790e-01;SOR=0.871;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,36:73:99:0|1:238671190_A_G:1400,0,1969:238671190
chr2	238671191	rs3739045	G	A	1391.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.860e-01;DB;DP=73;ExcessHet=3.0103;FS=0.890;MQ=60.00;MQRankSum=0.00;QD=19.06;ReadPosRankSum=-5.240e-01;SOR=0.871;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,36:73:99:0|1:238671190_A_G:1400,0,1969:238671190
chr2	238671196	rs3739044	T	C	1394.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.280e-01;DB;DP=72;ExcessHet=3.0103;FS=0.900;MQ=60.00;MQRankSum=0.00;QD=19.36;ReadPosRankSum=-5.860e-01;SOR=0.929;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,36:72:99:0|1:238671190_A_G:1403,0,1906:238671190
chr2	238671328	rs868119	A	G	1080.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=52;ExcessHet=3.0103;FS=1.111;MQ=59.84;MQRankSum=1.25;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=-4.200e-01;SOR=0.515;VQSLOD=2.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,31:52:99:1089,0,657
chr2	238671609	rs2001301	A	G	2931.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=205;ExcessHet=3.0103;FS=3.959;MQ=58.80;MQRankSum=-5.357e+00;QD=14.30;ReadPosRankSum=0.723;SOR=0.957;VQSLOD=-3.185e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:99,106:205:99:2940,0,2325
chr2	238671889	rs7609062	G	A	931.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230e+00;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=0.175;SOR=0.546;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,29:47:99:940,0,584
chr2	238671940	rs15232	C	T	708.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=-7.970e-01;SOR=0.685;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,25:42:99:717,0,450
chr2	238672703	rs3739038	C	G	996.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350e-01;DB;DP=81;ExcessHet=3.0103;FS=1.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.673;SOR=1.008;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,37:81:99:1005,0,1178
chr2	238672795	rs12477133	C	T	448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.220e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=1.53;SOR=0.784;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:457,0,471
chr2	238678875	rs6719679	A	G	126.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=1.44;SOR=0.527;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:134,0,174
chr2	238683166	rs2279644	G	A	504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=34;ExcessHet=3.0103;FS=5.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-1.180e+00;SOR=1.781;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:513,0,319
chr2	238687893	rs60023357	G	A	163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.142e+00;DB;DP=17;ExcessHet=3.0103;FS=8.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=-4.400e-01;SOR=0.033;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:172,0,381
chr2	238688244	rs1151798	A	G	610.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=1.721;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:220,21,0
chr2	238688275	rs2117363	C	T	104.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:113,0,23
chr2	238728736	rs79418672	T	C	253.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=-1.021e+00;SOR=0.818;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:262,0,207
chr2	238729161	rs56319750	G	A	104.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=1.65;SOR=1.022;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:113,0,63
chr2	238730317	rs62196084	A	G	332.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=19;ExcessHet=3.0103;FS=2.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.613;SOR=1.802;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:341,0,254
chr2	238730522	rs72987141	G	A	635.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-6.680e-01;SOR=0.693;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:644,0,918
chr2	238730635	rs56387887	G	A	276.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=1.04;SOR=0.818;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:285,0,207
chr2	238731931	rs4663794	C	T	167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.830e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=1.82;SOR=0.446;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:176,0,251
chr2	238733016	rs4663795	G	A	1605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.290e-01;DB;DP=130;ExcessHet=3.0103;FS=4.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.419;SOR=1.070;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,63:130:99:1614,0,1829
chr2	238742837	rs55675197	T	C	694.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=2.16;SOR=0.758;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,26:49:99:703,0,610
chr2	238786132	rs1210881	G	T	524.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.710e-01;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.50;ReadPosRankSum=2.02;SOR=0.957;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:40:373,40,0
chr2	238820059	.	G	A	194.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.19;ReadPosRankSum=0.717;SOR=0.293;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:203,0,151
chr2	238875491	rs35277801	G	T	216.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.893e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=1.11;SOR=0.569;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:98:224,0,98
chr2	238881469	rs1026038	A	G	183.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.674;SOR=1.911;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:77,0,64
chr2	238894784	.	CTT	C,CT	1280.70	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.090e-01;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.79;MQRankSum=0.00;QD=25.11;ReadPosRankSum=1.30;SOR=0.422;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,4,7:13:34:203,104,177,34,0,46
chr2	238894953	rs12473327	C	T	223.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.11;SOR=0.399;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:143,0,151
chr2	238896494	rs59213280	C	CA,CAT	1016.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.330e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.77;MQRankSum=0.00;QD=12.55;ReadPosRankSum=0.204;SOR=0.631;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:7,10,9:29:46:345,63,154,46,0,232
chr2	238896495	rs72981250	T	A	263.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=59.78;MQRankSum=0.00;QD=3.00;ReadPosRankSum=-2.500e-02;SOR=0.770;VQSLOD=3.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,7:30:82:82,0,597
chr2	238898809	rs4663276	G	A	1034.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=3.690;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:286,24,0
chr2	238899045	.	CT	C	140.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DP=10;ExcessHet=3.9794;FS=1.856;MQ=60.00;MQRankSum=0.00;QD=6.37;ReadPosRankSum=1.22;SOR=1.329;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:10:41:95,0,41
chr2	238903310	rs10203101	C	T	6613.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=1.488;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1842,171,0
chr2	238903399	rs12615308	G	A	959.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.753e+00;DB;DP=73;ExcessHet=3.0103;FS=3.136;MQ=59.84;MQRankSum=1.10;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.630;SOR=0.889;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,39:73:99:968,0,966
chr2	238912120	rs10929262	A	C	2413.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.97;DB;DP=74;ExcessHet=3.9794;FS=5.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-3.010e-01;SOR=0.621;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,28:74:99:688,0,1235
chr2	238925461	rs35692652	TC	T	2121.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.55;SOR=6.701;VQSLOD=7.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:45:561,45,0
chr2	238925473	rs2875817	G	A	1977.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.71;SOR=7.864;VQSLOD=24.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:435,33,0
chr2	238939000	rs6431578	G	A	1798.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.59;ReadPosRankSum=1.33;SOR=1.536;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,16:17:24:516,24,0
chr2	238939370	rs11679080	C	T	1779.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=90;ExcessHet=3.9794;FS=1.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=1.07;SOR=0.578;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,39:90:99:1043,0,1259
chr2	238944441	rs3832063	ACT	A	268.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=1.18;SOR=1.022;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:41:81,0,41
chr2	238944816	rs6732615	G	A	250.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=0.674;SOR=0.569;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr2	238949743	rs708078	G	A	88.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-4.800e-01;SOR=0.283;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:97:97,0,170
chr2	238969572	rs11397122	T	TG	571.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.74;SOR=5.892;VQSLOD=5.31;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr2	238969964	rs2250185	T	C	8089.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DB;DP=392;ExcessHet=3.9794;FS=0.520;MQ=60.00;MQRankSum=0.00;QD=11.77;ReadPosRankSum=1.09;SOR=0.758;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:192,200:392:99:4888,0,4407
chr2	238970158	rs145181192	AGCCTTATGGG	A	1048.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.64;ReadPosRankSum=0.301;SOR=0.422;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,9:25:99:330,0,1780
chr2	238972827	rs821480	T	C	2049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=5.590;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:511,36,0
chr2	238990135	rs2249173	G	C	1467.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=5.728;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:586,42,0
chr2	238990388	rs3210400	G	A	4632.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215e+00;DB;DP=191;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.701;SOR=0.662;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,95:191:99:2322,0,2566
chr2	238991733	rs2243417	C	A	1087.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DB;DP=81;ExcessHet=3.0103;FS=1.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.142;SOR=0.929;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1096,0,933
chr2	238991796	rs2278742	C	T	8630.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=112;ExcessHet=3.0103;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=-5.480e-01;SOR=0.648;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,46:112:99:1089,0,1791
chr2	239000182	rs3739055	C	T	586.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.24;ReadPosRankSum=-2.820e-01;SOR=0.446;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:96:177,0,96
chr2	239002480	rs60210173	CTTG	C	5840.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.298;DB;DP=183;ExcessHet=3.9794;FS=1.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.517;SOR=0.615;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:100,83:183:99:3165,0,4645
chr2	239002742	rs62196003	A	G	1074.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.66;ReadPosRankSum=-4.800e-01;SOR=1.292;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:222,0,102
chr2	239006650	rs11682046	T	C	4117.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=53;ExcessHet=3.9794;FS=1.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=0.590;SOR=0.551;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,31:53:99:841,0,663
chr2	239007163	rs73098352	C	A	170.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-1.282e+00;SOR=1.863;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:19:19,0,108
chr2	239007288	.	G	A	77.64	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=37.17;SOR=0.693;VQSLOD=18.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:239007288_G_A:90,6,0:239007288
chr2	239007290	.	G	A	77.64	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.01;SOR=0.693;VQSLOD=19.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:239007288_G_A:90,6,0:239007288
chr2	239007301	.	TAGAACCGTCCTCC	T	79	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=30.64;SOR=0.693;VQSLOD=3.95;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:239007288_G_A:90,6,0:239007288
chr2	239007755	rs3841572	CATT	C	2299.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=35;ExcessHet=3.9794;FS=1.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=2.02;SOR=1.143;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,18:35:99:700,0,749
chr2	239007806	rs1054640	A	G	4903.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602e+00;DB;DP=72;ExcessHet=3.0103;FS=6.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=-1.690e-01;SOR=1.383;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:822,0,1058
chr2	239007850	rs1054641	T	A	954.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=100;ExcessHet=3.0103;FS=0.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=-5.050e-01;SOR=0.562;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,39:100:99:963,0,1480
chr2	239007991	rs15787	T	A	846.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.010e-01;DB;DP=78;ExcessHet=3.0103;FS=1.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=-5.620e-01;SOR=0.990;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,33:78:99:855,0,1232
chr2	239009336	rs61744770	G	A	864.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=52;ExcessHet=3.0103;FS=2.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.905;SOR=1.214;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,31:52:99:873,0,554
chr2	239009384	rs62196013	C	T	439.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=30;ExcessHet=3.0103;FS=3.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-2.994e+00;SOR=1.627;VQSLOD=21.61;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,16:30:99:448,0,341
chr2	239010455	rs5839683	GGAA	G	536.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=0.364;SOR=0.776;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,14:27:99:545,0,641
chr2	239010577	rs1562333	G	C	1167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=2.20;SOR=0.705;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1176,0,1174
chr2	239010719	rs36066915	T	C	2593.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=130;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.35;SOR=0.684;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,65:130:99:1548,0,1421
chr2	239016539	rs935415	C	G	30016.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.830e-01;DB;DP=458;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=1.23;SOR=0.651;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,458:458:99:13735,1374,0
chr2	239025523	rs11903074	T	C	11747.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.910e-01;DB;DP=189;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=-9.600e-01;SOR=0.638;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,189:189:99:5424,567,0
chr2	239036416	rs12692214	T	C	15866.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=8.08;DB;DP=227;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=-1.699e+00;SOR=0.729;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,227:227:99:1|1:239036416_T_C:10082,686,0:239036416
chr2	239036423	rs62197371	C	A	9673.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=213;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.27;SOR=1.882;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,213:213:99:1|1:239036416_T_C:9690,650,0:239036416
chr2	239037273	rs72989009	C	A	797.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-1.370e-01;SOR=0.582;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,30:59:99:806,0,834
chr2	239037635	rs13025263	A	G	1034.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.50;ReadPosRankSum=-7.000e-01;SOR=1.329;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:858,63,0
chr2	239039057	rs13033248	A	G	3778.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=115;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=0.406;SOR=0.661;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,56:115:99:0|1:239039057_A_G:2063,0,3275:239039057
chr2	239039075	rs13006204	G	T	3397.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=117;ExcessHet=3.9794;FS=2.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=2.21;SOR=0.883;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,50:117:99:0|1:239039057_A_G:1871,0,3506:239039057
chr2	239039183	rs73102303	G	A	3710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DB;DP=139;ExcessHet=3.9794;FS=0.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=1.82;SOR=0.657;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,78:139:99:1820,0,1451
chr2	239039637	rs4663845	T	C	4842.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=84;ExcessHet=3.9794;FS=1.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.094;SOR=0.813;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2805,252,0
chr2	239039779	rs73102306	G	A	3929.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645e+00;DB;DP=121;ExcessHet=3.9794;FS=10.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=2.05;SOR=1.206;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,72:121:99:2010,0,1378
chr2	239039841	rs10172220	A	G	4453.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=207;ExcessHet=3.9794;FS=2.909;MQ=60.00;MQRankSum=0.00;QD=12.62;ReadPosRankSum=-1.348e+00;SOR=0.849;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,84:207:99:2071,0,3036
chr2	239039896	rs10182906	G	C	14776.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=262;ExcessHet=3.9794;FS=0.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=1.80;SOR=0.612;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,262:262:99:8083,785,0
chr2	239040187	rs12692215	T	C	13116.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.85;DB;DP=211;ExcessHet=3.9794;FS=1.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.582;SOR=0.800;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,211:211:99:6811,633,0
chr2	239040218	rs73102309	G	A	5450.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=193;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.245e+00;SOR=0.683;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,97:193:99:2389,0,2245
chr2	239040343	rs73102311	G	A	3175.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;DB;DP=115;ExcessHet=3.9794;FS=3.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=1.13;SOR=0.960;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,61:115:99:1504,0,1253
chr2	239049540	rs2241985	G	A	14589.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=444;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-8.000e-01;SOR=0.662;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:222,222:444:99:5587,0,5566
chr2	239050033	rs12692216	C	T	10013.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e+00;DB;DP=174;ExcessHet=3.9794;FS=3.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=-5.030e-01;SOR=0.988;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,90:174:99:2488,0,2396
chr2	239050142	rs73102336	G	A	1679.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-1.321e+00;SOR=0.673;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,62:134:99:1688,0,2009
chr2	239050356	rs4144851	C	G	1106.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.949e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.92;ReadPosRankSum=-2.810e-01;SOR=0.941;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:380,30,0
chr2	239051550	rs935411	T	C	2138.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=0.822;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:756,69,0
chr2	239053685	rs13013945	A	C	4013.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397e+00;DB;DP=93;ExcessHet=6.9897;FS=4.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-4.460e-01;SOR=0.974;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1096,0,1216
chr2	239054504	rs11674140	G	T	7491.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.167e+00;DB;DP=182;ExcessHet=6.9897;FS=1.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-3.400e-01;SOR=0.843;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,84:182:99:2099,0,2617
chr2	239054724	rs10192297	C	T	331.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.800e-01;SOR=1.244;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,139
chr2	239056867	rs7606281	G	C	624.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=-1.890e-01;SOR=0.990;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:239056867_G_C:117,0,164:239056867
chr2	239056885	rs7594225	A	G	498.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.18;ReadPosRankSum=0.524;SOR=0.593;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:239056867_G_C:75,0,167:239056867
chr2	239058030	rs111346179	A	G	237.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.160e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.86;ReadPosRankSum=1.02;SOR=0.836;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:246,0,176
chr2	239059484	rs7605194	T	C	10055.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=158;ExcessHet=3.9794;FS=1.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=1.64;SOR=0.872;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,73:158:99:1900,0,2320
chr2	239059902	rs7588480	T	C	657.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=1.42;SOR=1.528;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:128,0,136
chr2	239067756	.	G	A	36.64	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=18.32;SOR=0.693;VQSLOD=13.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr2	239070534	rs12618914	G	A	4974.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.41;DB;DP=90;ExcessHet=6.9897;FS=1.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=0.654;SOR=0.888;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,45:90:99:1647,0,1487
chr2	239071623	rs7564476	A	G	2846.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.286e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=0.552;SOR=1.887;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1381,102,0
chr2	239074480	rs36066920	T	G	407.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=-7.000e-01;SOR=0.430;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,115
chr2	239075935	rs3820817	A	G	5395.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=129;ExcessHet=6.9897;FS=11.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-2.400e-01;SOR=0.358;VQSLOD=17.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,70:129:99:1805,0,1580
chr2	239079542	rs2278737	A	G	1261.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=40;ExcessHet=3.9794;FS=2.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.057;SOR=1.096;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:660,0,572
chr2	239079798	rs112719715	T	C	298.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.87;ReadPosRankSum=-2.100e-01;SOR=0.818;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:68:121,0,68
chr2	239081996	rs11309913	TC	T	2055.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.890e-01;DB;DP=27;ExcessHet=3.0103;FS=4.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=-2.590e-01;SOR=2.115;VQSLOD=6.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,27:27:81:841,81,0
chr2	239082040	rs7585597	T	C	3529.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.870e-01;DB;DP=45;ExcessHet=3.0103;FS=10.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.24;ReadPosRankSum=1.70;SOR=0.146;VQSLOD=17.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1484,135,0
chr2	239082166	rs3832064	G	GC	12173.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.78;SOR=1.172;VQSLOD=5.64;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4368,373,0
chr2	239090959	rs35468889	G	A	882.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.342;SOR=0.601;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:195,0,305
chr2	239091081	rs11884218	A	C	587.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.46;SOR=5.421;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr2	239092618	rs3217566	C	CCACA	2836.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e-01;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.26;ReadPosRankSum=1.39;SOR=0.669;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,32:67:99:1238,0,1834
chr2	239092893	rs12623230	C	A	958.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-2.070e-01;SOR=0.624;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:218,0,229
chr2	239093788	rs6431588	T	C	3399.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=2.258;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1316,126,0
chr2	239094140	rs34992484	T	TA	168.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.26;ReadPosRankSum=0.967;SOR=0.836;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:38:94,0,38
chr2	239096622	rs11688732	G	T	390.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=1.08;SOR=0.922;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:41:41,0,365
chr2	239103642	rs139500567	T	C	66.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=25;ExcessHet=3.0103;FS=5.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.65;ReadPosRankSum=-2.600e-01;SOR=2.093;VQSLOD=19.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,4:25:75:75,0,618
chr2	239133641	rs72992741	A	G	335.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=2.199;MQ=59.09;MQRankSum=-4.730e-01;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=1.42;SOR=0.275;VQSLOD=0.318;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:41:128,0,41
chr2	239133980	rs7558525	C	T	2026.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=140;ExcessHet=3.0103;FS=0.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.077;SOR=0.690;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,76:140:99:2035,0,1576
chr2	239134056	rs7572285	A	G	5646.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=173;ExcessHet=3.9794;FS=1.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-4.190e-01;SOR=0.586;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:97,76:173:99:0|1:239134056_A_G:2911,0,3913:239134056
chr2	239134063	rs7584376	G	T	2946.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e+00;DB;DP=183;ExcessHet=3.0103;FS=11.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-2.400e-01;SOR=0.631;VQSLOD=18.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:104,79:183:99:0|1:239134056_A_G:2955,0,4069:239134056
chr2	239134138	rs7572392	A	C	1594.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=150;ExcessHet=3.0103;FS=7.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-6.450e-01;SOR=1.238;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,67:150:99:1603,0,1973
chr2	239136143	rs3795902	C	T	225.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=-6.740e-01;SOR=0.859;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:56:234,0,56
chr2	239139883	rs13425452	G	C	1671.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=62;ExcessHet=3.9794;FS=2.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.198;SOR=0.501;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,27:62:99:656,0,984
chr2	239140062	rs74605005	C	T	55.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-1.383e+00;SOR=2.303;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:64,0,37
chr2	239140352	.	T	TGGCCTCCGGGCCGCGGTGGCCTCCGGGCCGCGGTGGCCTCCGGGCCGCGGC	316.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DP=15;ExcessHet=3.0103;FS=0.000;MQ=58.92;MQRankSum=-1.833e+00;QD=21.09;ReadPosRankSum=-1.299e+00;SOR=0.784;VQSLOD=0.280;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,3:15:99:325,0,568
chr2	239140403	rs35825433	T	C	1259.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=64;ExcessHet=3.0103;FS=2.287;MQ=59.65;MQRankSum=-1.495e+00;NEGATIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=-1.286e+00;SOR=1.127;VQSLOD=-1.393e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,30:64:99:0|1:239140403_T_C:1268,0,1423:239140403
chr2	239140426	.	A	AC	1580.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.380e-01;DP=82;ExcessHet=3.0103;FS=1.879;MQ=60.00;MQRankSum=0.00;QD=19.27;ReadPosRankSum=-1.086e+00;SOR=0.950;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,40:82:99:0|1:239140403_T_C:1589,0,1737:239140403
chr2	239140434	rs111384196	C	A	1579.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;DB;DP=84;ExcessHet=3.0103;FS=0.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=-1.132e+00;SOR=0.903;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,42:84:99:0|1:239140403_T_C:1588,0,1714:239140403
chr2	239140728	rs11689033	A	G	810.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=49;ExcessHet=3.0103;FS=1.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=0.910;SOR=0.476;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:819,0,667
chr2	239147171	rs9776	C	G	122.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.25;SOR=1.179;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:239147171_C_G:135,9,0:239147171
chr2	239147174	rs56201071	G	A	120.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.23;SOR=1.179;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:239147171_C_G:135,9,0:239147171
chr2	239148535	rs1047589	G	C	726.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-01;DB;DP=70;ExcessHet=3.0103;FS=0.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=-2.300e-01;SOR=0.526;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,32:70:99:735,0,1008
chr2	239148813	rs112946632	A	C	100.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=20.06;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=18.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:47:109,0,47
chr2	239148970	rs56294817	C	A	2572.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=55;ExcessHet=1.5490;FS=13.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=1.36;SOR=2.030;VQSLOD=13.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1775,153,0
chr2	239148996	rs140615710	CCCGT	C	6783.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DB;DP=77;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.60;ReadPosRankSum=1.23;SOR=0.681;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1430,0,1426
chr2	239149377	rs111527470	G	C	61.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.67;MQRankSum=0.431;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-8.420e-01;SOR=1.179;VQSLOD=0.087;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:70:70,0,104
chr2	239155053	rs934945	C	T	1821.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DB;DP=83;ExcessHet=3.9794;FS=3.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.394;SOR=0.485;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:761,0,1280
chr2	239229204	rs368022925	GC	G	426.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014e+00;DB;DP=23;ExcessHet=3.0103;FS=4.693;MQ=60.00;MQRankSum=0.00;QD=18.53;ReadPosRankSum=-2.350e-01;SOR=0.148;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,13:23:99:435,0,332
chr2	239229372	rs13398676	C	A	4291.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=83;ExcessHet=3.9794;FS=6.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-1.441e+00;SOR=0.531;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,81:83:99:2589,199,0
chr2	239233732	rs4663304	T	C	194.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=3.611;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr2	239237953	rs12464423	G	T	5653.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.170e-01;DB;DP=110;ExcessHet=3.9794;FS=7.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=-2.270e-01;SOR=0.885;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3411,330,0
chr2	239242719	rs5839695	G	GT,GTT	806.49	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.560e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=0.464;SOR=1.189;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,10,4:15:39:326,59,39,195,0,212
chr2	239247174	rs73090911	A	G	1260.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=15;ExcessHet=3.9794;FS=5.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=0.267;SOR=2.406;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:583,45,0
chr2	239307245	rs571820	A	G	1169.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.61;DB;DP=16;ExcessHet=3.9794;FS=8.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=0.619;SOR=2.655;VQSLOD=18.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:598,48,0
chr2	239341961	rs571536	A	C	607.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.77;ReadPosRankSum=-2.530e-01;SOR=2.833;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr2	239976697	rs113824469	T	TTATTA	1000.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.080e-01;DB;DP=19;ExcessHet=6.9897;FS=4.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-2.177e+00;SOR=0.160;VQSLOD=5.81;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:13,6:19:99:191,0,904
chr2	239988977	rs74430364	C	T	95.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=0.385;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:95:104,0,95
chr2	240002771	rs151192501	T	G	2644.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=165;ExcessHet=3.0103;FS=6.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=-3.480e-01;SOR=1.148;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,93:165:99:2653,0,1685
chr2	240006161	rs373583507	GCA	G	52.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.52;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:24:61,0,24
chr2	240009570	rs56948342	G	GC	1232.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=5.728;VQSLOD=6.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:357,30,0
chr2	240029736	rs7585225	T	C	1582.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=12;ExcessHet=3.0103;FS=2.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=0.955;SOR=0.296;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:405,36,0
chr2	240030122	rs3828202	A	G	565.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=0.289;SOR=0.941;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:136,12,0
chr2	240048027	rs2277885	C	T	754.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.520e-01;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.96;ReadPosRankSum=0.906;SOR=0.859;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:592,51,0
chr2	240055901	rs2278778	G	A	2310.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.828e+00;DB;DP=61;ExcessHet=1.5490;FS=7.079;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-1.257e+00;SOR=0.254;VQSLOD=5.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1778,180,0
chr2	240066417	rs2290087	A	G	6690.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.053e+00;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.99;ReadPosRankSum=2.29;SOR=0.703;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2742,293,0
chr2	240066526	rs2290088	T	C	4086.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.375e+00;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=-6.790e-01;SOR=0.708;VQSLOD=6.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1579,144,0
chr2	240078587	rs3080332	GAC	G	4411.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.468;DB;DP=46;ExcessHet=3.9794;FS=2.513;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=1.19;SOR=0.450;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2001,139,0
chr2	240083528	rs3791515	G	A	6413.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=122;ExcessHet=3.9794;FS=1.319;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=-9.660e-01;SOR=0.616;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3562,363,0
chr2	240083588	.	A	T	803.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.19;DP=60;ExcessHet=3.0103;FS=2.557;MQ=60.00;MQRankSum=0.00;QD=13.39;ReadPosRankSum=0.388;SOR=1.095;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,26:60:99:812,0,947
chr2	240083731	rs3828216	C	T	3853.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.618e+00;DB;DP=65;ExcessHet=3.9794;FS=3.916;MQ=60.00;MQRankSum=0.00;QD=21.53;ReadPosRankSum=-3.850e-01;SOR=0.424;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2230,195,0
chr2	240084211	rs7581200	G	A	693.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.564e+00;DB;DP=11;ExcessHet=3.9794;FS=6.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=0.066;SOR=0.088;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:381,33,0
chr2	240085403	rs11124182	C	A	2582.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.08;SOR=4.047;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:739,57,0
chr2	240085674	rs13010577	C	T	1994.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.820e-01;DB;DP=49;ExcessHet=1.5490;FS=4.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=-4.520e-01;SOR=1.341;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1474,146,0
chr2	240085795	rs2290089	A	C	126.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=3.258;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:141,12,0
chr2	240097969	.	TCCCTCCCTCTGCCCGGCCTCCCTCCCTCTGCCCGGCCTTCTGCGCCCGCACTCCCTCCCTCTGCCCAGCCTTCCGTGCCCGCAC	T	5659.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DP=56;ExcessHet=3.9794;FS=0.000;MQ=57.36;MQRankSum=1.17;QD=34.30;ReadPosRankSum=1.13;SOR=0.777;VQSLOD=0.329;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,53:56:99:2187,0,984
chr2	240111477	rs531993	A	T	2531.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.918e+00;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.165;SOR=0.763;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1253,117,0
chr2	240158529	rs3842554	A	AAGAAAATCAAAGATCCTT	1541.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=20;ExcessHet=6.9897;FS=2.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=-8.300e-02;SOR=0.387;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,13:20:99:524,0,1385
chr2	240219669	rs11696099	C	T	396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090e-01;DB;DP=42;ExcessHet=3.0103;FS=1.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-4.360e-01;SOR=0.967;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:405,0,688
chr2	240323661	rs1709851	C	A	7660.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.225;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=-5.230e-01;SOR=0.687;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2907,269,0
chr2	240323905	rs3215239	T	TG	11060.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=173;ExcessHet=3.9794;FS=3.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=0.047;SOR=0.571;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:76,97:173:99:3120,0,2314
chr2	240500173	rs10187580	T	C	7475.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568e+00;DB;DP=149;ExcessHet=6.9897;FS=0.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-7.400e-01;SOR=0.619;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,75:149:99:1889,0,1935
chr2	240500413	rs6543554	A	G	18372.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.380e-01;DB;DP=239;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=0.803;SOR=0.748;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,124:239:99:3112,0,2800
chr2	240500437	rs10180205	C	T	8448.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=216;ExcessHet=6.9897;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.515;SOR=0.651;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,108:216:99:2818,0,2615
chr2	240504878	rs6719279	C	T	8875.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=127;ExcessHet=3.0103;FS=8.195;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.93;ReadPosRankSum=-7.920e-01;SOR=1.152;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,50:127:99:1147,0,1803
chr2	240702216	rs11884577	C	G	1527.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=1.34;SOR=0.748;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,34:61:99:1039,0,768
chr2	240702308	rs6543581	A	G	920.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=-5.800e-01;SOR=1.552;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,11:12:6:402,0,6
chr2	240721384	rs2898872	C	A	1436.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.910e-01;DB;DP=21;ExcessHet=3.9794;FS=1.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.24;ReadPosRankSum=1.13;SOR=1.002;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:216,0,274
chr2	240721728	rs1574030	A	G	4434.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=88;ExcessHet=3.9794;FS=5.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.338;SOR=1.079;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,51:88:99:1365,0,885
chr2	240721814	rs1574029	A	C	1992.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-4.400e-01;SOR=0.773;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:561,0,540
chr2	240900691	rs4077387	C	G	7881.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292e+00;DB;DP=139;ExcessHet=3.9794;FS=3.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=0.121;SOR=1.001;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4151,417,0
chr2	240922822	rs958960	C	A	3099.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.640e-01;DB;DP=33;ExcessHet=3.0103;FS=4.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=-1.236e+00;SOR=1.461;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1116,99,0
chr2	240944434	rs1030963	T	C	308.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.30;ReadPosRankSum=0.366;SOR=3.056;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	240946559	rs6713039	G	A	283.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=0.414;SOR=0.976;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr2	240947066	rs3792089	G	A	201.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=2.303;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
chr2	240954079	rs11693245	G	A	3160.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.981e+00;DB;DP=54;ExcessHet=3.9794;FS=0.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=-5.440e-01;SOR=0.869;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1762,161,0
chr2	240957243	rs6746937	C	T	4552.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.899;DB;DP=89;ExcessHet=3.9794;FS=1.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=0.542;SOR=0.859;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2667,267,0
chr2	240957801	rs10804402	G	A	2954.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.540e-01;DB;DP=54;ExcessHet=3.9794;FS=0.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=0.784;SOR=0.601;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1760,162,0
chr2	240958129	rs4149540	C	T	1614.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.262;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=-1.559e+00;SOR=0.754;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:451,33,0
chr2	240961728	rs2083411	T	C	9050.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=112;ExcessHet=3.0103;FS=6.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.93;ReadPosRankSum=1.78;SOR=0.394;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3421,336,0
chr2	240961852	rs7596788	A	G	4172.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=47;ExcessHet=3.0103;FS=3.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=1.30;SOR=0.403;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1453,141,0
chr2	240964714	rs11541494	G	C	5383.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.610;DB;DP=94;ExcessHet=3.9794;FS=1.408;MQ=60.00;MQRankSum=0.00;QD=16.67;ReadPosRankSum=0.919;SOR=0.609;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2716,282,0
chr2	240981102	rs6722520	C	A	295.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.253;SOR=0.138;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,97
chr2	240981179	rs6731916	T	C	2332.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.20;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=-7.610e-01;SOR=0.743;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:705,0,384
chr2	240981262	rs6728493	A	C	4447.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.84;DB;DP=143;ExcessHet=3.9794;FS=1.077;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.672;SOR=0.590;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,73:143:99:2021,0,1857
chr2	240981347	.	G	A	3241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355e+00;DP=292;ExcessHet=3.0103;FS=6.167;MQ=59.97;MQRankSum=-1.007e+00;QD=11.10;ReadPosRankSum=-1.300e+00;SOR=1.010;VQSLOD=0.018;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:148,144:292:99:0|1:240981347_G_A:3250,0,5385:240981347
chr2	240981375	rs6732185	T	A	9987.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900e+00;DB;DP=294;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=1.04;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.942;SOR=0.677;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:155,139:294:99:1|0:240981347_G_A:2968,0,5475:240981347
chr2	240981487	rs60617721	A	G	938.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DB;DP=27;ExcessHet=3.9794;FS=1.411;MQ=52.77;MQRankSum=1.95;NEGATIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=1.16;SOR=0.373;VQSLOD=-3.087e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,3:27:54:0|1:240981487_A_G:54,0,1606:240981487
chr2	240981515	rs59139800	A	G	1496.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630e-01;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=54.92;MQRankSum=1.92;NEGATIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=3.91;SOR=0.585;VQSLOD=-3.713e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,9:48:99:0|1:240981487_A_G:261,0,2085:240981487
chr2	240981543	rs71428408	A	G	906.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-01;DB;DP=46;ExcessHet=3.0103;FS=1.536;MQ=52.89;MQRankSum=2.06;NEGATIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=2.45;SOR=0.368;VQSLOD=-3.026e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,24:46:99:0|1:240981487_A_G:914,0,1419:240981487
chr2	240981548	rs6711783	G	C	1021.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659e+00;DB;DP=42;ExcessHet=3.9794;FS=9.700;MQ=47.04;MQRankSum=2.61;QD=13.80;ReadPosRankSum=1.62;SOR=0.105;VQSLOD=-2.842e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,24:42:99:0|1:240981487_A_G:929,0,1213:240981487
chr2	240981571	rs71428409	A	G	1113.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932e+00;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=55.66;MQRankSum=1.85;NEGATIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=-1.673e+00;SOR=0.556;VQSLOD=-3.158e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,31:62:99:0|1:240981487_A_G:1121,0,1106:240981487
chr2	240982443	rs34596708	C	T	5740.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210e-01;DB;DP=153;ExcessHet=3.9794;FS=0.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=0.275;SOR=0.626;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:84,69:153:99:0|1:240982443_C_T:2591,0,4528:240982443
chr2	240982449	rs35318485	C	T	5629.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=142;ExcessHet=3.9794;FS=0.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=-1.800e-02;SOR=0.638;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:77,65:142:99:0|1:240982443_C_T:2547,0,4396:240982443
chr2	240982791	rs10171741	T	C	326.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.63;ReadPosRankSum=0.674;SOR=0.569;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:164,0,22
chr2	240984789	rs12465491	C	T	1836.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.347e+00;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=-9.860e-01;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.018;SOR=0.758;VQSLOD=1.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,71:142:99:1845,0,2075
chr2	240985511	rs10933560	A	G	2964.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.760e-01;DB;DP=109;ExcessHet=3.9794;FS=5.356;MQ=59.74;MQRankSum=1.07;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-3.980e-01;SOR=1.076;VQSLOD=0.198;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,57:109:99:1669,0,1460
chr2	241066201	rs74526284	C	T	5191.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=190;ExcessHet=3.9794;FS=1.097;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=1.31;SOR=0.793;VQSLOD=5.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,100:190:99:2590,0,2449
chr2	241066280	rs4292120	C	T	8296.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071e+00;DB;DP=142;ExcessHet=3.9794;FS=1.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=0.318;SOR=0.871;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,66:142:99:1586,0,2110
chr2	241066313	rs79464938	C	T	2215.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=105;ExcessHet=3.9794;FS=2.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=1.02;SOR=0.886;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,42:105:99:1048,0,1581
chr2	241070240	rs1866646	A	G	350.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=-6.740e-01;SOR=2.670;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr2	241070346	rs3749077	A	C	487.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=19;ExcessHet=3.9794;FS=6.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=2.00;SOR=0.061;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:373,0,221
chr2	241070675	rs78880041	G	A	819.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=39;ExcessHet=3.9794;FS=7.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=1.11;SOR=0.171;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,15:39:99:0|1:241070675_G_A:523,0,1147:241070675
chr2	241070693	rs76109721	G	A	692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.670e-01;DB;DP=23;ExcessHet=3.9794;FS=4.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=1.68;SOR=0.155;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,11:23:99:0|1:241070675_G_A:464,0,751:241070675
chr2	241070786	rs78869736	G	C	210.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.51;ReadPosRankSum=0.328;SOR=1.863;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:152,0,106
chr2	241073066	rs79750005	G	A	254.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.87;ReadPosRankSum=0.431;SOR=1.402;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr2	241073496	rs12621732	A	G	586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=1.94;SOR=0.950;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:295,0,215
chr2	241073511	rs141215786	AAAG	A	636.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=1.05;QD=18.71;ReadPosRankSum=1.58;SOR=0.693;VQSLOD=0.444;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:308,0,328
chr2	241075418	rs78169596	C	G	51.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.01;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:59,0,34
chr2	241078471	rs2279691	A	C	288.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=0.253;SOR=1.802;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:112,0,68
chr2	241078784	rs2279690	A	T	2925.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860e+00;DB;DP=126;ExcessHet=3.9794;FS=0.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-1.250e-01;SOR=0.757;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,60:126:99:1548,0,1788
chr2	241078957	rs10526200	GGAA	G	163.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.38;SOR=1.609;VQSLOD=5.75;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr2	241079382	rs2291769	T	G	1443.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.129e+00;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=-4.300e-02;SOR=0.772;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,58:104:99:1452,0,1213
chr2	241079956	rs2291768	T	C	1431.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=0.377;SOR=0.824;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:534,0,385
chr2	241375527	rs2352823	C	T	520.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.190e-01;DB;DP=10;ExcessHet=3.9794;FS=3.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.906;SOR=0.287;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:146,0,150
chr2	241390516	rs3828336	C	T	2849.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=133;ExcessHet=3.9794;FS=1.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=1.24;SOR=0.838;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,58:133:99:1542,0,1939
chr2	241395503	rs2292832	T	C	1757.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e+00;DB;DP=22;ExcessHet=3.0103;FS=1.169;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=0.869;SOR=0.534;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:200,0,402
chr2	241421846	rs10804408	C	T	226.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=3.912;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr2	241439326	rs12994525	G	C	5741.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.23;DB;DP=105;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.87;ReadPosRankSum=0.596;SOR=0.765;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,105:105:99:1|1:241439326_G_C:4745,319,0:241439326
chr2	241439329	rs12994526	G	T	5848.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.27;DB;DP=105;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.95;ReadPosRankSum=0.683;SOR=0.685;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,105:105:99:1|1:241439326_G_C:4819,328,0:241439326
chr2	241439337	rs12994534	G	A	6334.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.65;DB;DP=124;ExcessHet=1.5490;FS=1.265;MQ=60.00;MQRankSum=0.00;QD=28.93;ReadPosRankSum=1.25;SOR=0.819;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,124:124:99:1|1:241439326_G_C:5272,373,0:241439326
chr2	241440020	rs12986801	T	C	7118.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=167;ExcessHet=1.5490;FS=0.526;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=1.54;SOR=0.762;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,166:167:99:5227,462,0
chr2	241448660	rs59967171	G	GGATA	882.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.210e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.59;ReadPosRankSum=-3.800e-02;SOR=0.569;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:39:554,39,0
chr2	241451471	rs140818336	G	A	1735.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.25;ReadPosRankSum=0.680;SOR=0.650;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,68:131:99:1744,0,1377
chr2	241452068	rs12695024	C	T	890.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.080e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=-2.421e+00;SOR=1.206;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:684,51,0
chr2	241452198	rs12695025	T	C	5937.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.047e+00;DB;DP=124;ExcessHet=1.5490;FS=3.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=-5.230e-01;SOR=0.986;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3991,372,0
chr2	241452212	rs12695026	T	C	7055.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.01;DB;DP=150;ExcessHet=1.5490;FS=5.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=1.64;SOR=1.022;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,148:150:99:4750,400,0
chr2	241459497	rs68104327	G	A	2624.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034e+00;DB;DP=87;ExcessHet=3.9794;FS=2.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.400e-01;SOR=0.514;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,42:87:99:1098,0,1347
chr2	241463595	rs35996697	T	C	9394.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.49;DB;DP=283;ExcessHet=3.9794;FS=1.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=1.11;SOR=0.864;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,150:283:99:4522,0,3140
chr2	241464001	rs56027150	C	G	226.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=0.189;SOR=1.402;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr2	241464915	rs4398270	A	C	1096.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=-1.321e+00;SOR=0.954;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:465,36,0
chr2	241465361	rs68048482	T	C	2341.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.74;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=0.950;SOR=0.674;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,35:73:99:1250,0,1174
chr2	241465994	rs10933611	T	C	1930.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.34;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=0.290;SOR=1.609;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1014,69,0
chr2	241466020	rs7593034	G	C	967.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.700e-02;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=-8.670e-01;SOR=1.739;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:690,51,0
chr2	241466032	rs10933612	A	G	1082.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.13;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=0.769;SOR=1.556;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:539,39,0
chr2	241469091	rs72998051	C	T	418.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=0.788;SOR=0.892;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,5:19:99:0|1:241469091_C_T:150,0,553:241469091
chr2	241469097	rs57354161	C	T	382.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DB;DP=18;ExcessHet=3.0103;FS=5.563;MQ=60.00;MQRankSum=0.00;QD=21.24;ReadPosRankSum=-6.410e-01;SOR=0.105;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,13:18:99:1|0:241469091_C_T:391,0,171:241469091
chr2	241469235	rs58740825	A	G	776.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.30;DB;DP=10;ExcessHet=1.5490;FS=7.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=1.23;SOR=0.240;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
chr2	241492251	rs187086913	G	T	1192.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.284e+00;DB;DP=110;ExcessHet=3.0103;FS=0.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=1.11;SOR=0.801;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,50:110:99:0|1:241492251_G_T:1201,0,1656:241492251
chr2	241492255	rs4676428	G	T	10541.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.280e-01;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=-7.510e-01;SOR=0.693;VQSLOD=6.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,112:112:99:1|1:241492251_G_T:4281,337,0:241492251
chr2	241496445	rs11285932	TA	T	1115.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=1.02;SOR=0.970;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:603,45,0
chr2	241496567	rs7609147	A	G	2866.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525e+00;DB;DP=87;ExcessHet=3.9794;FS=1.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.694;SOR=0.562;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,47:87:99:1305,0,1071
chr2	241496770	rs62621191	C	A	6832.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e+00;DB;DP=320;ExcessHet=3.9794;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=0.418;SOR=0.642;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:178,142:320:99:3353,0,4725
chr2	241500508	rs10933615	T	C	414.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DB;DP=6;ExcessHet=6.9897;FS=3.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=-1.383e+00;SOR=1.609;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:152,0,23
chr2	241500674	rs4676426	C	G	5087.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=66;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.31;ReadPosRankSum=0.916;SOR=0.698;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,34:66:99:942,0,835
chr2	241500896	rs1128149	C	T	8267.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.680e-01;DB;DP=173;ExcessHet=6.9897;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.155;SOR=0.748;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,92:173:99:2504,0,2237
chr2	241512049	rs2975769	C	A	1242.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.487e+00;DB;DP=92;ExcessHet=3.0103;FS=5.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-9.220e-01;SOR=0.228;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,47:92:99:1251,0,1497
chr2	241512271	rs2001821	C	T	266.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=9;ExcessHet=3.0103;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=-4.310e-01;SOR=2.584;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:58:275,0,58
chr2	241512358	rs2001822	C	T	366.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.789e+00;DB;DP=34;ExcessHet=3.0103;FS=15.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=-2.260e-01;SOR=0.035;VQSLOD=12.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,15:34:99:0|1:241512358_C_T:375,0,623:241512358
chr2	241512470	rs2001823	G	T	7717.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.49;DB;DP=125;ExcessHet=3.9794;FS=4.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=-7.260e-01;SOR=0.934;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3939,373,0
chr2	241512830	rs143634220	C	CGCCAGGGCCCTGCCT	234.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=-8.420e-01;SOR=1.609;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:2:1|1:241512830_C_CGCCAGGGCCCTGCCT:43,2,0:241512830
chr2	241515813	rs2975794	C	T	1668.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.70;ReadPosRankSum=-3.890e-01;SOR=3.865;VQSLOD=16.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:263,0,171
chr2	241516094	rs34344571	G	C	2721.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=238;ExcessHet=3.0103;FS=0.471;MQ=59.89;MQRankSum=0.920;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-7.980e-01;SOR=0.730;VQSLOD=2.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:130,108:238:99:2730,0,3180
chr2	241516241	rs76791955	C	T	2690.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=219;ExcessHet=3.0103;FS=0.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.867;SOR=0.756;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,106:219:99:2699,0,2961
chr2	241526259	rs55650580	T	A	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.39;ReadPosRankSum=-3.600e-01;SOR=1.002;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:207,0,262
chr2	241528927	rs55893551	G	A	463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=0.340;SOR=2.179;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,13:17:99:472,0,111
chr2	241528968	rs55976923	G	C	195.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=1.38;SOR=2.303;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:25:204,0,25
chr2	241530616	rs2975757	A	T	69.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:78,0,33
chr2	241531479	rs3792269	A	G	1435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.124;SOR=0.701;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,57:116:99:1444,0,1386
chr2	241531575	rs3792270	A	G	853.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=-2.930e-01;SOR=0.760;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:862,0,575
chr2	241531737	rs2975762	A	G	2726.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=47;ExcessHet=3.9794;FS=0.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.816;SOR=0.782;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:592,0,630
chr2	241531954	rs56027088	G	A	482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052e+00;DB;DP=34;ExcessHet=3.0103;FS=5.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-2.660e-01;SOR=0.202;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:491,0,368
chr2	241533845	rs2975763	T	C	3879.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.00;SOR=3.014;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1660,144,0
chr2	241533934	rs17846973	T	C	1384.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DB;DP=102;ExcessHet=3.0103;FS=2.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.600;SOR=1.013;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,54:102:99:1393,0,1155
chr2	241534088	rs140681762	C	T	733.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DB;DP=71;ExcessHet=3.0103;FS=2.050;MQ=60.00;MQRankSum=0.00;QD=10.33;ReadPosRankSum=0.325;SOR=0.465;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,31:71:99:742,0,1040
chr2	241534163	rs17846975	G	A	447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.174e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.293;SOR=0.473;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:456,0,403
chr2	241534294	rs76673850	T	C	44.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=8;ExcessHet=3.0103;FS=9.700;MQ=60.00;MQRankSum=0.00;QD=5.62;ReadPosRankSum=-2.100e+00;SOR=2.209;VQSLOD=14.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:51:51,0,197
chr2	241534381	rs2975764	A	G	1605.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.908e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.88;ReadPosRankSum=-5.600e-02;SOR=0.920;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:857,72,0
chr2	241536053	rs2953171	C	T	1118.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=65;ExcessHet=3.0103;FS=0.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=-7.030e-01;SOR=0.527;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,34:65:99:1127,0,940
chr2	241536126	rs7607759	A	G	1503.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.250e-01;DB;DP=124;ExcessHet=3.0103;FS=2.387;MQ=59.98;MQRankSum=0.969;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.80;SOR=0.976;VQSLOD=1.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:65,59:124:99:1512,0,1688
chr2	241537569	rs17846981	T	C	884.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=80;ExcessHet=3.0103;FS=1.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.996e+00;SOR=1.051;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,34:80:99:893,0,1197
chr2	241537617	rs58715822	TC	T	5548.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DB;DP=60;ExcessHet=3.9794;FS=7.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.82;ReadPosRankSum=-1.075e+00;SOR=0.937;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:24,36:60:99:1168,0,716
chr2	241538061	rs55878652	T	C	1546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.746;SOR=0.724;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,63:113:99:1555,0,1167
chr2	241538074	rs2975766	A	G	13085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=0.737;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3469,348,0
chr2	241538229	rs2975767	A	G	3783.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.130e-01;DB;DP=42;ExcessHet=3.0103;FS=1.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.79;ReadPosRankSum=1.75;SOR=0.452;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1462,126,0
chr2	241556158	rs33930889	T	TA	308.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=6.9897;FS=1.670;MQ=59.18;MQRankSum=-4.520e-01;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-4.310e-01;SOR=1.420;VQSLOD=1.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:8:70,0,8
chr2	241569329	rs2975785	A	G	1923.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=84;ExcessHet=3.9794;FS=0.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=1.40;SOR=0.610;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,38:84:99:872,0,1254
chr2	241570249	rs3749172	A	C	5667.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850e-01;DB;DP=214;ExcessHet=3.9794;FS=3.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.239;SOR=0.968;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:114,100:214:99:2637,0,3053
chr2	241570391	rs2975786	A	G	3137.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866e+00;DB;DP=19;ExcessHet=3.0103;FS=4.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.19;ReadPosRankSum=-5.790e-01;SOR=3.126;VQSLOD=18.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:280,0,412
chr2	241621866	rs62187796	C	T	2257.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-01;DB;DP=137;ExcessHet=3.0103;FS=7.886;MQ=53.94;MQRankSum=4.10;NEGATIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=1.65;SOR=0.451;VQSLOD=-1.842e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,83:137:99:0|1:241621866_C_T:2266,0,2211:241621866
chr2	241621869	rs74882485	G	A	3290.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=146;ExcessHet=3.9794;FS=21.298;MQ=52.81;MQRankSum=-9.780e-01;NEGATIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-6.000e-02;SOR=1.416;VQSLOD=-4.557e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:86,60:146:99:1|0:241621866_C_T:1516,0,3407:241621866
chr2	241622209	rs4081908	T	C	24234.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=308;ExcessHet=3.0103;FS=0.000;MQ=58.33;QD=30.83;SOR=0.806;VQSLOD=3.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,308:308:99:9289,923,0
chr2	241627928	rs1560619	A	G	10044.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039e+00;DB;DP=144;ExcessHet=3.0103;FS=2.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=-3.980e-01;SOR=0.539;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,70:144:99:1569,0,1821
chr2	241631267	rs71428453	A	G	2725.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DB;DP=117;ExcessHet=3.9794;FS=4.736;MQ=55.74;MQRankSum=-4.936e+00;NEGATIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=1.57;SOR=0.964;VQSLOD=-3.418e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:63,54:117:99:1300,0,1538
chr2	241631413	rs71428454	T	G	5715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.030e-01;DB;DP=259;ExcessHet=3.9794;FS=0.526;MQ=58.64;MQRankSum=4.72;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=1.81;SOR=0.630;VQSLOD=-5.941e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:130,129:259:99:3076,0,3339
chr2	241631476	rs4328629	C	G	15023.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=230;ExcessHet=3.0103;FS=2.236;MQ=57.48;MQRankSum=-3.640e+00;NEGATIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=0.090;SOR=0.876;VQSLOD=-2.115e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:118,112:230:99:2984,0,2979
chr2	241631665	rs76463197	C	T	2347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651e+00;DB;DP=214;ExcessHet=3.0103;FS=2.319;MQ=59.33;MQRankSum=-4.110e-01;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=0.675;SOR=0.859;VQSLOD=0.276;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:111,103:214:99:2356,0,2993
chr2	241659015	rs10933635	T	C	145.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=1.83;SOR=0.368;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:154,0,60
chr2	241659368	rs6437368	C	A	829.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735e+00;DB;DP=12;ExcessHet=3.9794;FS=2.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=1.76;SOR=1.284;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:204,0,216
chr2	241660978	rs2060193	T	C	2068.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.99;SOR=3.830;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:729,57,0
chr2	241663019	rs2043252	C	T	286.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.247e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=-6.270e-01;SOR=0.283;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:295,0,220
chr2	241666418	rs2060194	G	A	439.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=31;ExcessHet=3.0103;FS=1.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-1.780e-01;SOR=0.270;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:448,0,461
chr2	241674222	rs3755533	T	C	2057.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=1.12;SOR=0.672;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:358,0,394
chr2	241680633	rs4414678	G	T	479.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=14;ExcessHet=3.9794;FS=1.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=0.934;SOR=1.387;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:224,0,144
chr2	241680802	rs56024577	G	A	376.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=34;ExcessHet=3.0103;FS=2.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-1.631e+00;SOR=1.053;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:385,0,424
chr2	241684660	rs1529665	T	C	1062.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.550e-01;DB;DP=13;ExcessHet=6.9897;FS=10.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=-7.500e-02;SOR=2.683;VQSLOD=15.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:120,0,295
chr2	241696840	rs10594016	ATCC	A	12478.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DB;DP=213;ExcessHet=3.9794;FS=0.729;MQ=60.00;MQRankSum=0.00;QD=19.68;ReadPosRankSum=0.693;SOR=0.823;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:101,100:213:99:2291,0,3741
chr2	241702561	rs11688298	T	A	3514.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DB;DP=118;ExcessHet=6.9897;FS=0.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-1.530e-01;SOR=0.616;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,49:118:99:1229,0,1859
chr2	241706139	.	A	ATC	73.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=5;ExcessHet=3.9794;FS=0.000;MQ=57.67;MQRankSum=0.00;QD=7.35;ReadPosRankSum=0.00;SOR=0.255;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:44:44,0,191
chr2	241706162	rs35575132	T	A	37.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=57.25;MQRankSum=0.870;NEGATIVE_TRAIN_SITE;QD=4.64;ReadPosRankSum=1.74;SOR=0.760;VQSLOD=-2.262e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:39:0|1:241706162_T_A:39,0,281:241706162
chr2	241706164	rs35734942	T	A	34.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=57.53;MQRankSum=0.632;NEGATIVE_TRAIN_SITE;QD=3.79;ReadPosRankSum=1.38;SOR=0.941;VQSLOD=-2.073e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:36:0|1:241706162_T_A:36,0,308:241706162
chr2	241706166	rs10804413	T	A	710.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=9;ExcessHet=3.9794;FS=9.432;MQ=57.63;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=1.38;SOR=3.258;VQSLOD=-1.845e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:99:145,0,299
chr2	241706305	rs184996346	C	T	1304.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DB;DP=109;ExcessHet=3.0103;FS=0.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-3.004e+00;SOR=0.793;VQSLOD=21.58;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:58,51:109:99:1313,0,1455
chr2	241708675	rs2288753	C	T	1155.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910e-01;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.571;SOR=0.859;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:658,0,628
chr2	241710791	rs58084812	G	A	74.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.420e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.75;ReadPosRankSum=-1.910e-01;SOR=0.693;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:83:83,0,265
chr2	241712902	rs61273688	C	A	135.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754e+00;DB;DP=9;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.464;SOR=0.069;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:144,0,145
chr2	241713429	rs2288751	T	C	906.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110e-01;DB;DP=19;ExcessHet=3.9794;FS=2.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.450;SOR=1.479;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:284,0,324
chr2	241713646	rs1063353	A	G	3635.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DB;DP=132;ExcessHet=3.9794;FS=3.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-7.150e-01;SOR=0.894;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,72:132:99:1693,0,1344
chr2	241726127	rs1864877	A	G	283.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.61;SOR=1.609;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:300,21,0
chr2	241808825	rs140694338	AGGCCTCCCT	A	3158.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.97;ReadPosRankSum=1.33;SOR=1.004;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,25:26:21:1047,0,21
chr2	241808942	rs11681134	G	T	623.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.980e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.82;ReadPosRankSum=0.385;SOR=2.948;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:368,27,0
chr2	241810957	rs10196315	C	T	3122.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.769e+00;DB;DP=25;ExcessHet=3.0103;FS=2.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=0.534;SOR=1.078;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:927,75,0
chr2	241812566	rs12997245	G	A	4367.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.79;DB;DP=60;ExcessHet=3.0103;FS=5.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=1.01;SOR=1.430;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,59:60:99:2007,140,0
chr2	241815307	rs12478859	C	T	6339.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=0.4576;FS=0.000;MQ=59.94;QD=38.17;SOR=1.286;VQSLOD=2.67;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,142:142:99:1|1:241815307_C_T:6356,427,0:241815307
chr2	241815308	rs12464426	A	G	13662.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=59.98;QD=29.81;SOR=1.436;VQSLOD=3.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,141:141:99:1|1:241815307_C_T:6356,427,0:241815307
chr2	241815473	rs12695032	G	A	7672.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760e-01;DB;DP=108;ExcessHet=3.0103;FS=2.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.51;ReadPosRankSum=-8.200e-02;SOR=0.912;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3298,321,0
chr2	241815591	rs4675793	C	T	1650.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=3.816;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:554,42,0
chr2	241815620	rs13030904	G	A	1018.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.380e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.11;ReadPosRankSum=-1.043e+00;SOR=0.394;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:444,33,0
chr2	241816545	rs6732985	C	T	9688.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.334e+00;DB;DP=115;ExcessHet=3.0103;FS=1.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=-1.211e+00;SOR=0.548;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3714,343,0
chr2	241817322	rs10199038	C	T	1273.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=10;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=-9.900e-02;SOR=1.646;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:429,30,0
chr2	241818017	rs35566646	G	A	800.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=18;ExcessHet=3.9794;FS=4.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=1.03;SOR=2.621;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:53:631,53,0
chr2	241818279	rs4273214	C	A	10987.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.690e-01;DB;DP=200;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-6.640e-01;SOR=0.713;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,197:200:99:5677,538,0
chr2	241818527	rs4344931	A	C	378.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=4.615;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr2	241826754	rs10933510	G	A	2007.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.834e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.37;ReadPosRankSum=-3.800e-02;SOR=3.258;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:737,59,0
chr2	241827618	rs6707763	T	C	1393.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.690e-01;DB;DP=18;ExcessHet=3.0103;FS=1.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=-5.620e-01;SOR=1.244;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:631,54,0
chr2	241827696	rs4675869	A	G	2875.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.338e+00;DB;DP=33;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=0.247;SOR=1.222;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1101,99,0
chr2	241828012	rs6708304	T	C	15079.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.975;DB;DP=183;ExcessHet=3.0103;FS=1.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-1.544e+00;SOR=0.880;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:2,181:183:99:1|1:241828012_T_C:5328,499,0:241828012
chr2	241828034	rs6707568	A	G	17591.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=143;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.73;SOR=1.694;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,143:143:99:1|1:241828012_T_C:6497,448,0:241828012
chr2	241828215	rs34671465	G	A	517.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133e+00;DB;DP=6;ExcessHet=3.0103;FS=2.754;MQ=59.23;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=-1.368e+00;SOR=0.223;VQSLOD=-1.070e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:232,18,0
chr2	241829249	rs7600652	G	T	1030.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.372e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.24;ReadPosRankSum=0.233;SOR=1.292;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:369,27,0
chr2	241830763	rs4675863	A	T	1094.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.231;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.18;ReadPosRankSum=0.010;SOR=2.242;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:350,27,0
chr2	241830944	rs10171053	G	T	15758.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.629e+00;DB;DP=149;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=-1.317e+00;SOR=0.636;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,149:149:99:1|1:241830944_G_T:6586,454,0:241830944
chr2	241830969	rs10171067	G	A	18673.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.04;DB;DP=187;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.93;ReadPosRankSum=-1.600e+00;SOR=0.744;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,187:187:99:1|1:241830944_G_T:7845,565,0:241830944
chr2	241831005	rs10195453	C	T	19404.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.629e+00;DB;DP=248;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=-4.450e-01;SOR=0.655;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,248:248:99:8121,743,0
chr2	241831264	rs6737320	G	A	15595.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.247e+00;DB;DP=206;ExcessHet=3.0103;FS=0.710;MQ=59.96;MQRankSum=-1.095e+00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=0.165;SOR=0.829;VQSLOD=1.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,206:206:99:6385,615,0
chr2	241831296	rs6709469	C	G	14084.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.880;DB;DP=178;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=-1.157e+00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=-1.113e+00;SOR=0.725;VQSLOD=1.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,178:178:99:5801,533,0
chr2	241831471	rs6709742	C	T	2919.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.788e+00;DB;DP=27;ExcessHet=3.0103;FS=6.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.44;ReadPosRankSum=0.893;SOR=1.888;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:81:1|1:241831471_C_T:1195,81,0:241831471
chr2	241831472	rs6724533	A	G	2919.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DB;DP=26;ExcessHet=3.0103;FS=5.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.18;ReadPosRankSum=1.43;SOR=1.834;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:81:1|1:241831471_C_T:1195,81,0:241831471
chr2	241831560	rs6724662	A	G	509.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.18;SOR=2.833;VQSLOD=14.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr2	241834654	rs3936203	A	G	288.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=-6.740e-01;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:125,12,0
chr2	241834706	rs10173475	A	G	877.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.080e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=-9.840e-01;SOR=1.542;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:213,21,0
chr2	241834770	rs4293565	A	G	1779.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.400e-01;DB;DP=17;ExcessHet=3.0103;FS=3.083;MQ=60.00;MQRankSum=0.00;QD=25.80;ReadPosRankSum=0.999;SOR=0.295;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:545,51,0
chr2	241834944	rs4468809	T	C	13322.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.192;DB;DP=170;ExcessHet=3.0103;FS=1.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=1.70;SOR=0.912;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,169:170:99:5100,473,0
chr2	241835379	rs12105122	G	A	4267.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=42;ExcessHet=3.0103;FS=10.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.43;ReadPosRankSum=0.917;SOR=1.807;VQSLOD=17.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1525,126,0
chr2	241835421	rs13426919	A	G	3990.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=32;ExcessHet=3.0103;FS=3.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.40;ReadPosRankSum=-3.850e-01;SOR=1.236;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:96:1|1:241835421_A_G:1399,96,0:241835421
chr2	241835432	rs10933514	G	A	3709.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=31;ExcessHet=3.0103;FS=3.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.00;ReadPosRankSum=-4.950e-01;SOR=1.160;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:96:1|1:241835421_A_G:1382,96,0:241835421
chr2	241835543	rs10206101	A	C	706.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.400e-02;DB;DP=8;ExcessHet=3.0103;FS=5.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=-6.080e-01;SOR=0.136;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:311,24,0
chr2	241859255	rs4675790	T	G	988.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.73;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-3.680e-01;SOR=0.522;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,7:24:99:192,0,557
chr2	241861904	rs4514870	G	C	1742.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DB;DP=70;ExcessHet=3.9794;FS=0.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-1.940e-01;SOR=0.813;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,34:70:99:879,0,954
chr2	241865156	rs4675847	T	C	5521.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=106;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=2.03;SOR=0.697;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,43:106:99:1030,0,1408
chr2	241865415	rs4073150	G	A	346.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=-2.410e-01;SOR=0.914;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:57:258,0,57
chr2	241868956	rs4407242	G	A	322.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.163;SOR=0.804;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:164,0,255
chr2	241869378	rs6756731	A	T	629.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=0.00;SOR=0.582;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:372,0,186
chr2	241871956	rs12472087	G	T	2924.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.82;DB;DP=67;ExcessHet=3.9794;FS=7.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-2.470e-01;SOR=1.447;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1287,0,943
chr2	241872597	rs4441463	A	G	5210.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DB;DP=104;ExcessHet=3.9794;FS=5.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=1.25;SOR=0.984;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,60:104:99:1464,0,1070
chr2	241872718	.	C	T	434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.74;ReadPosRankSum=-1.687e+00;SOR=0.927;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:443,0,614
chr2	241874559	rs12618707	T	C	1918.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;DB;DP=89;ExcessHet=3.9794;FS=0.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=1.07;SOR=0.774;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,42:89:99:995,0,1158
chr2	241875163	rs10200156	G	T	305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DB;DP=26;ExcessHet=3.0103;FS=1.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.67;SOR=1.179;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:314,0,325
chr2	241889171	rs12479396	G	A	1109.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=13;ExcessHet=3.9794;FS=3.866;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=0.00;SOR=0.239;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:129,0,301
chr2	241889937	rs4077132	A	G	2581.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112e+00;DB;DP=39;ExcessHet=3.9794;FS=6.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=-7.700e-02;SOR=0.299;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,20:39:99:496,0,543
chr2	241898520	rs11886565	T	C	1200.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=27;ExcessHet=3.9794;FS=1.213;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=-3.770e-01;SOR=1.028;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:315,0,480
chr2	241898824	rs10169006	A	G	5917.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e-01;DB;DP=108;ExcessHet=3.9794;FS=3.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.136;SOR=0.876;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,59:108:99:1383,0,1119
chr2	241898947	rs10179839	G	T	1842.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=1.74;SOR=0.725;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:368,0,160
chr2	241903943	rs77569264	G	A	369.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.450e-01;DB;DP=33;ExcessHet=3.0103;FS=1.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.108;SOR=1.061;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:378,0,390
chr2	241904001	rs11688859	G	C	2044.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368e+00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=1.31;SOR=0.775;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:309,0,371
chr2	241905779	rs12466789	A	G	7773.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364e+00;DB;DP=163;ExcessHet=3.9794;FS=0.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-6.490e-01;SOR=0.781;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,81:163:99:1885,0,1967
chr2	241925194	rs4675837	A	C	820.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=59.85;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=32.84;ReadPosRankSum=1.32;SOR=2.584;VQSLOD=-3.566e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:181,0,139
chr2	241928074	rs3922986	A	T	147.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.01;ReadPosRankSum=-1.870e-01;SOR=0.602;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:156,0,368
chr2	241929228	rs10200024	A	G	4069.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=97;ExcessHet=1.5490;FS=1.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=-5.680e-01;SOR=0.894;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,52:97:99:1306,0,999
chr2	241974289	rs2074822	G	A	2414.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.41;SOR=3.160;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:480,45,0
chr2	241976615	rs34203344	CG	C	7696.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.698e+00;DB;DP=107;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.83;ReadPosRankSum=-8.580e-01;SOR=0.444;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,106:107:99:3692,286,0
chr2	241979550	rs7571117	T	C	8221.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.223;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=0.233;SOR=0.699;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3663,342,0
chr2	241987554	rs7590504	G	A	2816.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=2.652;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1450,139,0
chr2	241991029	rs10206324	A	G	7191.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.570e+00;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=-8.450e-01;SOR=0.756;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2934,287,0
chr2	241992016	rs13031812	A	G	1106.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.500e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.92;ReadPosRankSum=-1.950e-01;SOR=0.900;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
chr2	241993027	rs6715941	C	T	727.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=4.712;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:209,18,0
chr2	242001991	rs10178146	A	G	1039.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.224e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.10;ReadPosRankSum=0.705;SOR=1.508;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:291,24,0
chr2	242002701	rs12464946	C	G	775.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=59.61;POSITIVE_TRAIN_SITE;QD=20.62;SOR=4.294;VQSLOD=3.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:36:1|1:242002701_C_G:525,36,0:242002701
chr2	242002724	rs74000339	G	A	851.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=59.67;POSITIVE_TRAIN_SITE;QD=27.76;SOR=4.615;VQSLOD=5.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:242002701_C_G:523,36,0:242002701
chr2	242002828	rs7581709	C	T	2856.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=1.29;SOR=0.702;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:840,0,809
chr2	242003558	rs34771867	T	C	5934.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.847e+00;DB;DP=63;ExcessHet=3.0103;FS=4.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.23;ReadPosRankSum=-1.023e+00;SOR=1.205;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1827,189,0
chr2	242004199	rs2286319	G	C	23062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=262;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=1.398;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,262:262:99:8175,786,0
chr2	242004219	rs11464431	T	TG	34337.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.810e-01;DB;DP=325;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.15;ReadPosRankSum=1.64;SOR=0.435;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,325:325:99:12215,984,0
chr2	242007079	rs146651520	G	A	1018.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.245e+00;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.844;SOR=0.555;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,38:66:99:1027,0,858
chr2	242007465	rs5839780	AC	A	2281.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=1.73;SOR=0.582;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,21:35:99:681,0,418
chr2	242009273	rs13000549	G	T	1935.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.30;DB;DP=51;ExcessHet=3.9794;FS=2.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=-3.120e-01;SOR=0.266;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:962,0,749
chr2	242011151	rs6760731	A	G	6612.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=59.96;QD=34.99;SOR=0.887;VQSLOD=2.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2548,222,0
chr2	242011330	rs6746124	C	A	21333.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198e+00;DB;DP=340;ExcessHet=3.9794;FS=6.793;MQ=59.98;MQRankSum=1.53;NEGATIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=3.42;SOR=0.791;VQSLOD=-6.849e-01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:157,183:340:99:4527,0,4058
chr2	242012583	rs185968686	G	A	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.66;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=1.01;SOR=0.289;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:324,0,591
chr2	242021000	rs140631844	A	ATCAGG	5289.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.853;DB;DP=105;ExcessHet=6.9897;FS=2.440;MQ=60.00;MQRankSum=0.00;QD=17.34;ReadPosRankSum=1.64;SOR=0.889;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:61,44:105:99:1705,0,3822
chr2	242021216	rs2302045	G	A	4158.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=209;ExcessHet=3.9794;FS=1.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-1.320e-01;SOR=0.808;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,101:209:99:2406,0,2690
chr2	242021742	rs2108485	G	T	7048.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.960e-01;DB;DP=91;ExcessHet=3.9794;FS=0.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=0.441;SOR=0.743;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,45:91:99:1201,0,1216
chr2	242022038	rs1859925	G	A	299.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828e+00;DB;DP=13;ExcessHet=6.9897;FS=6.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-6.900e-02;SOR=0.064;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:139,0,222
chr2	242022111	rs1859926	T	C	153.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=1.15;SOR=1.981;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:82,0,30
chr2	242026608	rs4035	A	G	3537.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.580e-01;DB;DP=38;ExcessHet=3.9794;FS=5.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=1.06;SOR=1.703;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,26:38:99:807,0,278
chr2	242033696	rs57117519	T	C	292.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.980;SOR=1.123;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:75:75,0,103
chr2	242035544	rs2240539	G	C	1812.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DB;DP=51;ExcessHet=3.9794;FS=0.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-1.050e-01;SOR=0.631;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:627,0,853
chr2	242038603	rs112650856	C	T	209.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:147,0,28
chr2	242039198	rs3796093	T	C	2838.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=107;ExcessHet=3.9794;FS=0.502;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=1.48;SOR=0.743;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1284,0,1280
chr2	242039589	rs16843267	A	C	256.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.9794;FS=2.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=1.24;SOR=1.828;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:149,0,181
chr2	242041466	rs10650274	C	CA	611.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=0.385;SOR=3.767;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:0:184,0,0
chr2	242047530	rs34777851	G	T	2670.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DB;DP=109;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.427;SOR=0.716;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,49:109:99:1323,0,1617
chr2	242047750	rs6708265	A	G	2588.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.54;ReadPosRankSum=0.503;SOR=0.648;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:717,0,710
chr2	242062117	rs2302048	G	A	2847.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.89;DB;DP=111;ExcessHet=3.9794;FS=1.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-1.075e+00;SOR=0.795;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,54:111:99:1282,0,1382
chr2	242062410	rs2302051	C	A	1036.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.52;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=-5.830e-01;SOR=1.067;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:528,0,233
chr2	242062449	.	C	T	153.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090e-01;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.33;ReadPosRankSum=0.200;SOR=0.693;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:162,0,139
chr2	242063350	rs13385610	T	C	1860.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=29;ExcessHet=3.9794;FS=8.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=-1.974e+00;SOR=1.624;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:355,0,442
chr2	242063448	rs2302052	G	A	1805.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=79;ExcessHet=3.9794;FS=6.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.376;SOR=1.224;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1172,0,868
chr2	242065358	rs7587318	A	G	363.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=0.00;SOR=0.430;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,69
chr2	242065498	rs740393	A	G	3800.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=55;ExcessHet=3.9794;FS=0.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=0.295;SOR=0.927;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:838,0,752
chr2	242065624	rs2240541	A	G	5964.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.910e-01;DB;DP=178;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.819;SOR=0.649;VQSLOD=6.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,95:178:99:2350,0,1964
chr2	242066314	rs2240542	T	C	9287.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.243e+00;DB;DP=208;ExcessHet=6.9897;FS=2.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.941;SOR=0.900;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,99:208:99:2558,0,3011
chr2	242066830	rs2240544	G	A	2816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=103;ExcessHet=3.9794;FS=4.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=0.110;SOR=0.957;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,41:103:99:1001,0,1654
chr2	242067116	rs6745561	A	C	538.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.14;SOR=5.283;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:223,15,0
chr2	242072015	rs13382756	C	A	92.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,105
chr2	242072280	rs11684830	G	A	4017.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.440e-01;DB;DP=167;ExcessHet=3.9794;FS=2.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.217;SOR=0.559;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,90:167:99:2246,0,1857
chr2	242075147	rs34345561	A	AC	205.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.728;SOR=0.836;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:94:94,0,188
chr2	242075192	rs2108484	A	G	1043.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=0.926;SOR=1.445;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:239,0,374
chr2	242075623	rs2074825	A	G	343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-3.660e-01;SOR=0.610;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:64:187,0,64
chr2	242076944	rs7568414	G	A	47.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.28;ReadPosRankSum=-5.490e-01;SOR=0.223;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:55:55,0,246
chr2	242077496	rs1470414	C	T	2431.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=98;ExcessHet=3.9794;FS=6.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-3.960e-01;SOR=0.840;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,37:98:99:887,0,1541
chr2	242077685	rs1470413	G	A	366.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=1.23;SOR=0.929;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,5:20:99:110,0,474
chr2	242079007	rs2074828	A	G	850.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.695;SOR=0.788;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:484,0,590
chr2	242079233	rs10933531	T	C	1497.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.520e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=0.980;SOR=1.123;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:93:297,0,93
chr2	242082222	rs2074834	C	A	408.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=12;ExcessHet=3.9794;FS=6.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.963;SOR=2.833;VQSLOD=18.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:128,0,231
chr2	242082262	rs6709462	T	C	1227.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=21;ExcessHet=6.9897;FS=2.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-5.410e-01;SOR=1.032;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:294,0,291
chr2	242082480	rs758068	A	C	2805.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=46;ExcessHet=6.9897;FS=0.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=-3.000e-02;SOR=0.642;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,30:46:99:760,0,352
chr2	242082559	rs2066941	T	C	1237.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.178;SOR=0.772;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:224,0,283
chr2	242082628	rs758069	A	G	536.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=7;ExcessHet=6.9897;FS=4.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=1.40;SOR=2.215;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:106,0,108
chr2	242088921	rs3806599	A	C	5543.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;DB;DP=74;ExcessHet=3.9794;FS=3.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=0.552;SOR=0.458;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:957,0,961
chr2	242098219	rs56305838	G	A	263.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=1.38;SOR=2.093;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:24:196,0,24
chr2	242098426	rs6753081	T	A	203.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=-6.520e-01;SOR=0.859;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:143,0,106
chr2	242099961	rs2017989	C	T	3544.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.11;SOR=3.093;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:902,75,0
chr2	242109132	.	C	T	647.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-03;DP=66;ExcessHet=3.0103;FS=6.810;MQ=60.00;MQRankSum=0.00;QD=9.81;ReadPosRankSum=-1.506e+00;SOR=1.536;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:656,0,966
chr2	242121959	rs34186191	G	A	1106.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=33;ExcessHet=3.9794;FS=1.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=-2.710e-01;SOR=1.340;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:549,0,441
chr2	242122391	rs3868	T	C	971.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=-1.026e+00;SOR=0.551;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:143,0,218
chr2	242128416	rs11694278	G	A	218.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.157;SOR=0.582;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:134,0,108
chr2	242135017	rs12694996	A	C	2325.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=19;ExcessHet=3.9794;FS=2.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.21;ReadPosRankSum=2.41;SOR=1.725;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:400,0,222
chr2	242138490	rs11674264	A	G	1601.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.997e+00;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-6.930e-01;SOR=1.281;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:450,0,259
chr2	242139491	rs2013250	C	T	9700.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=211;ExcessHet=6.9897;FS=0.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-1.262e+00;SOR=0.766;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,139:211:99:3437,0,1653
chr2	242139853	rs76538371	C	A	613.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=2.32;SOR=1.002;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:116,0,355
chr2	242141719	rs2074840	C	T	2380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=69;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-5.570e-01;SOR=0.720;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,39:69:99:891,0,749
chr2	242142737	rs1179530	T	C	6813.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=1.681;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2157,198,0
chr2	242147264	rs9679681	C	A	673.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.674;SOR=1.179;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:336,0,266
chr2	242149073	rs10192730	G	A	1175.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=-2.040e-01;SOR=0.801;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:212,0,295
chr2	242150091	rs58527121	T	C	964.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;DB;DP=56;ExcessHet=3.0103;FS=1.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-1.890e-01;SOR=0.351;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:973,0,850
chr2	242151585	rs7593101	C	T	4642.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.843e+00;DB;DP=245;ExcessHet=3.9794;FS=0.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=1.07;SOR=0.776;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,100:245:99:2014,0,3846
chr2	242151748	rs7566006	G	C	749.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.532e+00;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.796;SOR=0.394;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,26:63:99:758,0,1291
chr2	242154015	rs12620606	A	G	499.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.36;ReadPosRankSum=1.01;SOR=1.402;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:116,0,107
chr2	242157228	rs78605785	G	T	4270.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DB;DP=239;ExcessHet=3.9794;FS=0.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=0.402;SOR=0.732;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,96:239:99:2139,0,3387
chr2	242163359	rs7590653	G	A	5114.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=200;ExcessHet=3.9794;FS=1.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=2.06;SOR=0.546;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,89:200:99:2275,0,2880
chr2	242168976	rs15129	T	C	2588.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=89;ExcessHet=6.9897;FS=1.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-4.360e-01;SOR=0.774;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,41:89:99:949,0,1213
chr2	242169411	.	GCCCAGCACC	G	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DP=35;ExcessHet=3.0103;FS=5.780;MQ=60.00;MQRankSum=0.00;QD=18.61;ReadPosRankSum=-1.258e+00;SOR=1.981;VQSLOD=4.66;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,17:35:99:660,0,1749
chr2	242176019	rs2305073	T	C	1022.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.940e-01;DB;DP=67;ExcessHet=3.9794;FS=1.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=1.67;SOR=0.495;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,28:67:99:676,0,995
chr2	242176429	rs62186363	G	A	83.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.52;MQRankSum=0.431;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=1.38;SOR=0.275;VQSLOD=0.588;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,151
chr2	242179134	rs10153800	G	A	4505.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=176;ExcessHet=3.9794;FS=9.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-4.200e-02;SOR=0.443;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,103:176:99:2609,0,1979
chr2	242189490	rs138851495	C	T	787.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=57;ExcessHet=3.0103;FS=4.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.113;SOR=1.473;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:796,0,872
chr2	242192848	rs7578199	T	C	4761.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.830e-01;DB;DP=147;ExcessHet=3.9794;FS=1.245;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=1.19;SOR=0.764;VQSLOD=6.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,81:147:99:2052,0,1618
chr2	242203916	rs11891776	A	C	3288.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=0.976;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1057,114,0
chr2	242204175	rs3771344	A	G	420.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.56;SOR=2.494;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:179,15,0
chr2	242206956	rs35334418	C	T	12297.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=1.056;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4248,419,0
chr2	242255830	rs13006939	C	T	2314.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e-01;DB;DP=156;ExcessHet=3.0103;FS=2.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.297;SOR=0.482;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,92:156:99:2323,0,1443
chr2	242259450	rs57172363	C	CT	1084.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.989;DB;DP=32;ExcessHet=3.9794;FS=1.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.200;SOR=1.376;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,18:32:99:639,0,422
chr2	242259614	rs6745662	G	A	12227.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=0.728;VQSLOD=19.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4064,409,0
chr2	242263803	.	CTTT	C,CT	1569.14	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=1.051;VQSLOD=5.73;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,3,8:11:42:370,195,187,75,0,42
chr2	242265273	rs4234100	C	T	647.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.84;ReadPosRankSum=-7.030e-01;SOR=2.200;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:102,0,168
chr2	242274489	rs56390510	G	C	234.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.80;ReadPosRankSum=-8.490e-01;SOR=0.641;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:121,0,382
chr2	242283071	rs6750169	C	T	2936.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.93;SOR=4.407;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:760,63,0
chr2	242283094	rs6707518	A	G	4385.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.34;SOR=3.145;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1098,95,0
chr2	242287487	rs12619647	T	G	3091.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=37;ExcessHet=3.9794;FS=5.431;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=0.368;SOR=0.260;VQSLOD=7.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:533,0,456
chr2	242289663	rs3217007	C	CATT	5560.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.27;SOR=2.379;VQSLOD=6.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1935,129,0
chr2	242312353	rs151280108	C	CT	1851.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=2.20;SOR=0.647;VQSLOD=6.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,29:62:99:788,0,951
chr2	242312477	rs201276541	G	GT	692.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=45;ExcessHet=6.9897;FS=1.384;MQ=60.00;MQRankSum=0.00;QD=5.29;ReadPosRankSum=-7.120e-01;SOR=0.826;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,16:45:99:323,0,506
chr2	242374215	rs35614125	C	T	62.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:71,0,34
chr2	242374358	rs16843671	T	C	1381.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-03;DB;DP=47;ExcessHet=3.9794;FS=1.498;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=1.90;SOR=0.886;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,16:47:99:291,0,733
chr2	242374519	rs34882686	C	T	207.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-5.620e-01;SOR=0.859;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:216,0,156
chr2	242382133	rs11679955	C	T	93.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-1.368e+00;SOR=0.495;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:102,0,132
chr2	242396033	rs2074775	A	G	2185.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949e+00;DB;DP=84;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=1.04;SOR=0.635;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1320,0,1129
chr2	242396087	rs2074774	A	T	5735.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.624e+00;DB;DP=167;ExcessHet=6.9897;FS=1.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.209;SOR=0.543;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,83:167:99:2022,0,2247
chr2	242401882	rs183276193	C	T	521.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.848e+00;DB;DP=30;ExcessHet=3.0103;FS=1.744;MQ=60.00;MQRankSum=0.00;QD=17.38;ReadPosRankSum=-2.224e+00;SOR=0.340;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:530,0,351
chr2	242402061	rs13011791	T	A	395.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-2.410e-01;SOR=0.541;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:404,0,561
chr2	242405021	rs2240482	C	T	5588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=250;ExcessHet=3.9794;FS=2.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.582;SOR=0.539;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:141,109:250:99:2639,0,3435
chr2	242407478	rs10933558	A	G	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.767;SOR=0.693;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,23:51:99:660,0,839
chr2	242407746	rs10933559	A	G	942.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710e-01;DB;DP=86;ExcessHet=3.0103;FS=0.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=1.35;SOR=0.856;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,37:86:99:951,0,1315
chr2	242415086	rs13422793	T	C	222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=18;ExcessHet=3.0103;FS=5.035;MQ=59.18;MQRankSum=-1.006e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.267;SOR=2.215;VQSLOD=-4.683e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:18:99:231,0,262
chr2	242415523	rs73006397	C	T	582.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e-03;DB;DP=15;ExcessHet=3.9794;FS=2.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=-3.930e-01;SOR=1.445;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:233,0,185
chr2	242423815	rs143908748	T	C	442.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-2.690e-01;SOR=0.941;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:451,0,367
chr2	242432704	rs2271030	G	C	2328.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.697e+00;DB;DP=45;ExcessHet=6.9897;FS=2.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-6.000e-02;SOR=0.515;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,26:45:99:741,0,629
chr2	242433012	rs11320829	G	GT	332.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.660e-01;DB;DP=18;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=7.91;ReadPosRankSum=-5.900e-01;SOR=2.165;VQSLOD=4.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:18:99:155,0,148
chr2	242433348	rs2018761	A	G	6095.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=2.046;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2149,198,0
chr2	242435658	rs33918796	CAAGG	C	236.38	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=-3.850e-01;SOR=1.609;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr2	242436238	rs3771590	C	T	166.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.55;ReadPosRankSum=-5.490e-01;SOR=0.157;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:54:54,0,234
chr2	242437228	rs33961871	C	T	293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.761e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-5.330e-01;SOR=0.527;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,9:20:99:0|1:242437228_C_T:302,0,558:242437228
chr2	242437293	rs33920609	T	C	95.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-1.800e-01;SOR=0.495;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:242437228_C_T:104,0,251:242437228
chr2	242439988	rs34506685	A	G	986.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009e+00;DB;DP=46;ExcessHet=3.9794;FS=1.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.257;SOR=0.910;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:585,0,777
chr2	242440221	rs13013693	G	A	2306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850e-01;DB;DP=176;ExcessHet=3.0103;FS=0.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.546;SOR=0.610;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,87:176:99:2315,0,2317
chr2	242440663	rs2279845	G	A	2185.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.82;DB;DP=50;ExcessHet=6.9897;FS=4.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-1.448e+00;SOR=1.624;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:946,0,649
chr2	242443377	rs35172632	G	A	2348.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=97;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.798;SOR=0.668;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,47:97:99:1181,0,1223
chr2	242483938	rs10533994	TATATAC	T	399.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.30;ReadPosRankSum=0.253;SOR=2.670;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:64:157,0,64
chr2	242498497	rs76993203	G	A	2111.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.00;ReadPosRankSum=2.26;SOR=0.604;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,18:44:99:548,0,783
chr2	242573211	rs7424328	T	C	11369.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109e+00;DB;DP=153;ExcessHet=3.9794;FS=2.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=-2.400e-02;SOR=0.537;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,80:153:99:2161,0,1961
chr2	242590237	rs4464318	T	C	909.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=59.97;MQRankSum=-9.080e-01;POSITIVE_TRAIN_SITE;QD=28.42;ReadPosRankSum=-1.790e-01;SOR=0.948;VQSLOD=1.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:135,0,220
chr2	242593834	rs369235839	TA	T	303.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-01;DB;DP=22;ExcessHet=6.9897;FS=8.483;MQ=59.55;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.74;ReadPosRankSum=0.395;SOR=2.252;VQSLOD=4.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:22:99:137,0,104
chr2	242594622	rs6712888	C	T	1777.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DB;DP=91;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-1.600e-02;SOR=0.691;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1065,0,1065
chr2	242605962	rs4675930	C	T	2694.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=76;ExcessHet=3.9794;FS=0.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=0.802;SOR=0.612;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,43:76:99:1287,0,894
chr2	242606036	rs6709768	G	C	5578.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110e-01;DB;DP=142;ExcessHet=6.9897;FS=2.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.824;SOR=0.882;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,68:142:99:1655,0,1850
chr2	242607451	rs62190299	T	C	1149.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=28;ExcessHet=3.9794;FS=4.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=-3.150e-01;SOR=2.419;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:622,0,342
chr2	242607483	rs7565540	G	T	2618.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.377e+00;DB;DP=57;ExcessHet=6.9897;FS=4.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.671;SOR=1.123;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,24:57:99:0|1:242607483_G_T:892,0,1371:242607483
chr2	242607484	rs7592829	C	T	2618.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.588e+00;DB;DP=59;ExcessHet=6.9897;FS=0.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-5.900e-02;SOR=0.860;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,24:59:99:0|1:242607483_G_T:892,0,1371:242607483
chr2	242607807	rs35275267	G	C	2059.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DB;DP=88;ExcessHet=3.9794;FS=4.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.110;SOR=1.126;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,37:88:99:1188,0,1592
chr2	242607924	rs62190301	A	G	4564.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090e-01;DB;DP=235;ExcessHet=3.9794;FS=1.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.577;SOR=0.599;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:135,100:235:99:2351,0,3423
chr2	242608183	rs138661495	G	GT	510.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=59.77;MQRankSum=0.00;QD=12.44;ReadPosRankSum=0.462;SOR=0.954;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,12:22:99:271,0,216
chr2	242609300	rs62190306	A	G	274.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.970e-01;DB;DP=9;ExcessHet=3.9794;FS=2.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=1.83;SOR=0.211;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:93:211,0,93
chr2	242609323	rs35009927	G	A	424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-1.050e-01;SOR=0.719;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,285
chr2	242609328	rs150813722	C	CT	402.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=11;ExcessHet=3.9794;FS=3.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.456;SOR=0.105;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:228,0,137
chr2	242609436	rs78151009	C	T	1973.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=67;ExcessHet=3.9794;FS=4.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=1.44;SOR=0.320;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:1146,0,741
chr2	242609504	rs111275706	T	C	3035.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-01;DB;DP=137;ExcessHet=3.9794;FS=2.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=-1.230e-01;SOR=0.546;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,70:137:99:1675,0,1665
chr2	242609554	rs77157539	C	T	3690.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;DB;DP=152;ExcessHet=3.9794;FS=7.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.042;SOR=0.547;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,77:152:99:1900,0,1843
chr2	242609647	rs76692745	G	C	2387.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e-01;DB;DP=97;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=-5.600e-01;SOR=0.678;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,50:97:99:1263,0,1325
chr2	242609660	rs62190307	C	G	2341.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=94;ExcessHet=3.9794;FS=2.178;MQ=60.00;MQRankSum=0.00;QD=13.69;ReadPosRankSum=-1.382e+00;SOR=0.502;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,51:94:99:1336,0,1134
chr2	242609789	rs35279812	C	T	482.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503e+00;DB;DP=15;ExcessHet=3.9794;FS=3.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.395;SOR=0.178;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:255,0,259
chr2	242609987	rs34509415	G	A	1227.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=36;ExcessHet=3.9794;FS=3.285;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=-4.200e-02;SOR=0.293;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,19:36:99:0|1:242609987_G_A:747,0,1246:242609987
chr2	242609992	rs35803955	T	C	1180.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569e+00;DB;DP=38;ExcessHet=3.9794;FS=1.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=0.466;SOR=0.363;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,19:38:99:0|1:242609987_G_A:741,0,1316:242609987
chr2	242610253	rs35454903	T	C	902.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e+00;DB;DP=46;ExcessHet=3.9794;FS=0.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=0.491;SOR=0.539;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,17:46:99:410,0,870
chr2	242610405	rs7584112	C	T	484.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=8;ExcessHet=6.9897;FS=7.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.180;SOR=3.258;VQSLOD=15.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:133,0,132
chr2	242610738	rs11538896	T	C	3408.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=147;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.929;SOR=0.691;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,59:147:99:1557,0,2274
chr2	242610773	rs7601000	T	A	19013.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.36;SOR=1.495;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,201:201:99:6288,602,0
chr2	242611050	rs1130910	C	G	3221.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.15;DB;DP=58;ExcessHet=6.9897;FS=5.259;MQ=60.00;MQRankSum=0.00;QD=19.06;ReadPosRankSum=0.541;SOR=1.385;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:845,0,848
chr2	242611167	rs34358914	C	G	304.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.366;SOR=0.223;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,192
chr2	242611547	rs34859751	G	A	2004.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631e+00;DB;DP=92;ExcessHet=3.9794;FS=4.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-5.000e-02;SOR=0.444;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,43:92:99:963,0,1281
chr2	242612784	rs1130905	T	G	684.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.84;ReadPosRankSum=1.15;SOR=1.179;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:359,30,0
chr2	242612835	rs62190321	T	C	346.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=8;ExcessHet=3.9794;FS=2.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.64;ReadPosRankSum=0.619;SOR=0.122;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:62:162,0,62
chr2	242612872	rs200279085	C	CGCT	478.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=6;ExcessHet=3.9794;FS=6.117;MQ=60.00;MQRankSum=0.00;QD=29.89;ReadPosRankSum=1.69;SOR=0.069;VQSLOD=4.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:69:204,0,69
chr2	242612909	rs1130906	A	G	998.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.490e-01;DB;DP=12;ExcessHet=3.0103;FS=7.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=-2.210e-01;SOR=0.063;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:436,36,0
chr2	242613089	rs7943	A	G	3272.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.031;DB;DP=39;ExcessHet=3.0103;FS=7.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=1.45;SOR=0.260;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1258,117,0
chr2	242613133	rs7740	T	G	2961.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.821;DB;DP=35;ExcessHet=3.0103;FS=2.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=-5.880e-01;SOR=0.462;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1082,105,0
chr2	242615462	rs5860	T	C	1345.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.630e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.91;ReadPosRankSum=-6.600e-01;SOR=1.007;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:36:508,36,0
chr2	242615472	rs3209844	G	A	416.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=12;ExcessHet=3.9794;FS=1.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.19;SOR=0.385;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:77:266,0,77
chr2	242615528	rs34706919	TG	T	777.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=0.756;SOR=0.782;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,17:27:99:525,0,272
chr2	242615874	rs62190356	T	C	278.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.94;SOR=4.174;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr2	242616511	rs4675909	A	G	962.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.863e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=1.94;SOR=0.540;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:548,0,463
chr2	242616549	rs35532290	C	T	2253.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=65;ExcessHet=3.9794;FS=1.228;MQ=60.00;MQRankSum=0.00;QD=17.07;ReadPosRankSum=0.315;SOR=1.025;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,31:65:99:0|1:242616549_C_T:1187,0,1777:242616549
chr2	242616554	rs4675908	C	A	2348.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.034e+00;DB;DP=71;ExcessHet=3.9794;FS=2.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.404;SOR=1.053;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,33:71:99:0|1:242616549_C_T:1258,0,1787:242616549
chr2	242616574	rs4675907	A	G	2560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737e+00;DB;DP=101;ExcessHet=3.9794;FS=0.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-7.890e-01;SOR=0.766;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,48:101:99:1279,0,1513
chr2	242616934	rs4076643	C	T	4037.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=156;ExcessHet=3.9794;FS=4.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=-1.600e-01;SOR=0.969;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,79:156:99:2099,0,1908
chr2	242616993	rs4075656	C	T	2124.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=81;ExcessHet=3.9794;FS=0.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=1.13;SOR=0.772;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,38:81:99:1079,0,1172
chr2	242617157	rs4076644	T	C	4637.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=51;ExcessHet=3.0103;FS=2.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=-1.062e+00;SOR=0.856;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1519,153,0
chr2	242617792	rs4076640	A	G	1866.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.284e+00;DB;DP=19;ExcessHet=3.0103;FS=6.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=1.46;SOR=2.602;VQSLOD=19.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:668,57,0
chr2	242617851	rs4076639	A	G	1396.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=49;ExcessHet=3.9794;FS=4.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-2.300e-01;SOR=0.339;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:759,0,505
chr2	242618050	rs1131195	A	G	4147.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.430e-01;DB;DP=101;ExcessHet=6.9897;FS=0.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-2.070e-01;SOR=0.767;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,52:101:99:1323,0,1213
chr2	242618171	rs4675905	T	C	858.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.339e+00;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-4.890e-01;SOR=0.593;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:471,0,442
chr2	242618195	rs10663952	C	CTT	519.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=-7.900e-02;SOR=0.770;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:307,0,293
chr2	242618218	rs4675904	C	T	124.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=1.53;SOR=0.188;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,1:8:21:0|1:242618218_C_T:21,0,524:242618218
chr2	242618224	rs4675903	G	C	124.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=1.53;SOR=0.124;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,1:8:21:0|1:242618218_C_T:21,0,524:242618218
chr2	242622192	rs35052478	A	AG	222.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e-02;DB;DP=6;ExcessHet=6.9897;FS=2.205;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=-3.280e-01;SOR=0.255;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,131
chr2	242622326	rs4347866	T	C	491.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=22;ExcessHet=6.9897;FS=3.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=-6.150e-01;SOR=0.637;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:190,0,345
chr2	242622370	rs35815994	A	C	480.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=15;ExcessHet=3.9794;FS=1.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.780;SOR=1.270;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:216,0,122
chr2	242625413	rs62191287	A	T	1418.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=0.599;SOR=0.717;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:44:500,44,0
chr2	242625935	rs7370850	G	C	936.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.710e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.22;ReadPosRankSum=-2.340e-01;SOR=2.093;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr2	242626479	rs35925884	C	T	674.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.047e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.66;ReadPosRankSum=-1.133e+00;SOR=1.445;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr2	242644352	rs3935478	T	C	606.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.915e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=-5.490e-01;SOR=3.716;VQSLOD=16.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:147,12,0
chr2	242648545	rs7595652	C	T	7398.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.181e+00;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.96;ReadPosRankSum=0.650;SOR=0.777;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,79:79:99:1|1:242648545_C_T:3615,244,0:242648545
chr2	242648549	rs7568408	G	A	7661.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.374e+00;DB;DP=84;ExcessHet=3.0103;FS=0.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.99;ReadPosRankSum=0.161;SOR=0.841;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,84:84:99:1|1:242648545_C_T:3721,253,0:242648545
chr2	242650634	rs7371753	G	A	665.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.990e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.67;ReadPosRankSum=-2.340e-01;SOR=3.160;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr2	242664362	rs142081672	G	A	2427.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=75;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=-1.360e-01;SOR=0.714;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,42:75:99:1085,0,854
chr2	242674803	rs77940364	G	A	14720.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.803;DB;DP=351;ExcessHet=1.5490;FS=0.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=1.53;SOR=0.641;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,351:351:99:10516,1047,0
chr2	242674959	rs62191977	T	G	14894.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732e+00;DB;DP=211;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=-4.900e-01;SOR=0.684;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,211:211:99:6591,633,0
chr2	242680229	rs60946542	G	A	618.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=13;ExcessHet=3.9794;FS=3.590;MQ=60.00;MQRankSum=0.00;QD=19.32;ReadPosRankSum=0.455;SOR=2.124;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:76:350,0,76
chr2	242680366	rs4073890	A	G	8598.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.337;DB;DP=82;ExcessHet=3.0103;FS=1.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.01;ReadPosRankSum=0.540;SOR=0.614;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2696,246,0
chr2	242680430	rs4073889	A	G	13349.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.020e-01;DB;DP=160;ExcessHet=3.0103;FS=0.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=1.04;SOR=0.606;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,160:160:99:4829,479,0
chr2	242680668	.	T	C	186.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.70;ReadPosRankSum=-9.920e-01;SOR=1.402;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:96:195,0,96
chr2	242682029	rs78147778	T	C	4573.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=1.031;VQSLOD=19.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4590,465,0
chr2	242682844	rs62192002	T	C	569.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.64;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:136,12,0
chr2	242683374	rs62192003	T	C	209.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=3.912;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:146,12,0
chr2	242683992	rs4366942	A	G	1279.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.443e+00;DB;DP=11;ExcessHet=3.0103;FS=3.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=0.853;SOR=2.093;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:398,33,0
chr2	242684115	rs4234097	T	C	7862.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=90;ExcessHet=3.0103;FS=0.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=-7.810e-01;SOR=0.844;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3066,270,0
chr2	242684394	rs4675884	G	C	7605.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.37;SOR=2.893;VQSLOD=19.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2625,219,0
chr2	242688203	rs34519321	C	T	14197.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=166;ExcessHet=3.0103;FS=0.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=-2.200e-02;SOR=0.574;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5127,497,0
chr2	242688292	rs34767042	C	T	19287.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.064;DB;DP=230;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=1.57;SOR=0.640;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,230:230:99:6784,687,0
chr2	242688366	rs35386923	C	T	11739.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.978e+00;DB;DP=120;ExcessHet=3.0103;FS=4.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=-1.601e+00;SOR=0.377;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3757,358,0
chr2	242688434	rs34077392	T	C	3980.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.82;DB;DP=50;ExcessHet=3.9794;FS=0.814;MQ=60.00;MQRankSum=0.00;QD=22.49;ReadPosRankSum=2.44;SOR=0.603;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1974,150,0
chr2	242688442	rs35249772	T	TC	2802.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.492;DB;DP=40;ExcessHet=3.9794;FS=5.285;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=1.98;SOR=1.485;VQSLOD=6.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1354,120,0
chr2	242688672	rs78280775	C	T	8918.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.020e-01;DB;DP=89;ExcessHet=3.0103;FS=2.079;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=0.915;SOR=0.552;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,88:89:99:2974,228,0
chr2	242688870	rs113047262	T	C	8283.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=85;ExcessHet=3.0103;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=1.71;SOR=0.624;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,84:85:99:2633,217,0
chr2	242690675	rs1106639	G	A	5644.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=1.054;VQSLOD=19.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:5661,554,0
chr2	242695497	rs62192024	T	C	7501.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.109e+00;DB;DP=155;ExcessHet=1.5490;FS=0.764;MQ=60.00;MQRankSum=0.00;QD=24.44;ReadPosRankSum=1.94;SOR=0.879;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:5386,466,0
chr2	242706956	rs6739113	C	T	189.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=58.70;MQRankSum=0.615;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-1.000e-03;SOR=1.609;VQSLOD=-1.891e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:198,0,243
chr2	242707101	rs6756901	A	G	6071.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.973;DB;DP=114;ExcessHet=1.5490;FS=1.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=-1.295e+00;SOR=0.610;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3653,342,0
chr2	242707477	rs11552660	T	C	278.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.030e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=-1.692e+00;SOR=0.976;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:287,0,206
chr2	242716380	rs12469459	A	T	2113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.405;SOR=0.721;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,85:171:99:2122,0,1948
chr2	242743651	rs744986	G	A	1860.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.67;DB;DP=23;ExcessHet=1.5490;FS=5.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=-1.288e+00;SOR=0.148;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:903,69,0
chr2	242750231	rs35392728	T	G	2187.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464e+00;DB;DP=30;ExcessHet=3.9794;FS=6.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.28;ReadPosRankSum=-4.360e-01;SOR=1.900;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:400,0,534
chr2	242750460	rs34748986	T	C	6683.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=30.66;SOR=1.287;VQSLOD=3.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1962,198,0
chr2	242752307	rs3749157	A	C	879.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.61;SOR=6.273;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr2	242755465	rs34241734	C	G	1442.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DB;DP=18;ExcessHet=3.9794;FS=8.437;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=0.124;SOR=0.158;VQSLOD=4.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:310,0,335
chr2	242755599	rs66482163	G	A	4668.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=93;ExcessHet=3.9794;FS=5.366;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=1.18;SOR=1.094;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,33:93:99:885,0,1577
chr2	242757119	rs3749154	T	C	245.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=0.00;SOR=1.230;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:128,0,103
chr2	242757411	rs36111671	C	T	3760.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659e+00;DB;DP=160;ExcessHet=3.9794;FS=0.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.544;SOR=0.739;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,80:160:99:2025,0,2269
chr2	242758203	rs2293763	T	C	11883.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e-01;DB;DP=217;ExcessHet=3.9794;FS=1.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-1.440e+00;SOR=0.806;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,112:217:99:2815,0,2580
chr2	242758326	rs2293761	G	A	5537.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743e+00;DB;DP=108;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=-3.550e-01;SOR=0.682;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,58:108:99:1416,0,1386
chr2	242758475	rs2293759	A	G	3166.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585e+00;DB;DP=35;ExcessHet=3.0103;FS=5.807;MQ=59.95;MQRankSum=1.15;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.79;ReadPosRankSum=-4.310e-01;SOR=0.260;VQSLOD=0.986;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,19:35:99:538,0,480
chr2	242793273	rs2227981	A	G	13350.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=207;ExcessHet=3.0103;FS=7.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=-4.560e-01;SOR=1.323;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,105:207:99:2621,0,2444
chr2	242793559	rs6705653	T	C	6938.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.503e+00;DB;DP=62;ExcessHet=3.0103;FS=1.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.78;ReadPosRankSum=1.39;SOR=0.455;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,30:62:99:918,0,1052
chr2	242794620	rs34819629	C	T	557.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.330e-01;DB;DP=32;ExcessHet=6.9897;FS=4.996;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.75;ReadPosRankSum=-7.140e-01;SOR=0.287;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,4:32:27:27,0,876
chr2	242800789	rs56211622	C	G	713.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=43;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.36;ReadPosRankSum=-2.330e-01;SOR=0.643;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,3:43:4:4,0,1194
chr2	242800900	rs35933396	G	A	2234.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DB;DP=171;ExcessHet=6.9897;FS=0.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.61;ReadPosRankSum=-1.509e+00;SOR=0.624;VQSLOD=21.80;culprit=QD	GT:AD:DP:GQ:PL	0/1:151,20:171:30:30,0,3895
chr2	242813124	rs13016102	T	C	8138.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=0.733;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2710,267,0
chr2	242813241	rs28392509	C	T	2245.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e+00;DB;DP=48;ExcessHet=3.9794;FS=0.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.072;SOR=0.808;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:535,0,786
chr2	242813276	rs62193136	C	T	1170.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DB;DP=28;ExcessHet=1.5490;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.850;SOR=1.435;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:390,0,412
chr2	242814009	rs7420371	G	A	3241.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=129;ExcessHet=3.9794;FS=0.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-2.080e-01;SOR=0.765;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,58:129:99:1572,0,1991
chr2	242839363	rs4973668	G	C	3472.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=60;ExcessHet=3.9794;FS=2.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=-2.150e-01;SOR=0.926;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:767,0,849
chr2	242839614	rs13025557	T	G	1043.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=1.10;SOR=1.179;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:180,0,184
chr2	242946289	rs28590502	G	A	1906.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=50;ExcessHet=3.9794;FS=3.597;MQ=45.45;MQRankSum=2.58;QD=16.88;ReadPosRankSum=1.94;SOR=0.906;VQSLOD=-4.109e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,31:50:99:722,0,448
chr3	239245	rs6442651	C	G	434.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=8;ExcessHet=3.9794;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=1.49;SOR=0.089;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:145,0,143
chr3	239555	rs58240971	C	CT	4170.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840e-01;DB;DP=105;ExcessHet=6.9897;FS=2.382;MQ=59.87;MQRankSum=-5.200e-01;QD=16.04;ReadPosRankSum=-7.800e-01;SOR=0.865;VQSLOD=0.251;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,59:105:99:1278,0,364
chr3	386149	rs138203260	AACAC	A,AACACACAC	709.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.410e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.50;ReadPosRankSum=0.884;SOR=1.209;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,3:6:99:244,126,159,120,0,114
chr3	386247	rs3736632	C	T	1583.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.302e+00;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.372;SOR=0.629;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,34:63:99:958,0,847
chr3	386520	rs1499046	C	T	1951.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=42;ExcessHet=6.9897;FS=0.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.800;SOR=0.850;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:438,0,690
chr3	391001	rs2272524	G	A	687.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.17;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=1.43;SOR=1.022;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:136,0,163
chr3	391100	rs13060847	A	G	5224.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.89;DB;DP=45;ExcessHet=3.0103;FS=2.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.79;ReadPosRankSum=0.643;SOR=0.451;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1524,135,0
chr3	402273	rs5845966	C	CT	195.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.000e-03;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=0.00;QD=9.32;ReadPosRankSum=0.908;SOR=1.329;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:12:104,12,0
chr3	403288	rs9824311	G	A	1885.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.012e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=0.345;SOR=0.623;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,14:26:99:0|1:403288_G_A:552,0,462:403288
chr3	403297	rs9839027	C	A	1959.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301e+00;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=-1.170e-01;SOR=0.643;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,15:28:99:0|1:403288_G_A:570,0,480:403288
chr3	403308	rs9824442	G	A	1861.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.455e+00;DB;DP=33;ExcessHet=6.9897;FS=1.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.593;SOR=0.520;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:505,0,569
chr3	403345	rs9846775	A	G	4669.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.630e-01;DB;DP=65;ExcessHet=3.0103;FS=3.067;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=-2.172e+00;SOR=1.101;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1947,194,0
chr3	404771	rs4684390	C	T	2382.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.07;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=-8.690e-01;SOR=0.864;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:650,60,0
chr3	405202	rs2387180	A	T	229.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.54;ReadPosRankSum=0.524;SOR=1.402;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	417979	rs3773381	A	G	1922.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=74;ExcessHet=3.9794;FS=2.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.079;SOR=0.944;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,27:74:99:754,0,1214
chr3	417994	rs930237	A	G	6864.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.220e-01;DB;DP=78;ExcessHet=3.0103;FS=4.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=-1.080e-01;SOR=0.457;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2428,234,0
chr3	418089	rs3773380	C	T	2644.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=98;ExcessHet=3.9794;FS=1.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=1.37;SOR=0.791;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,41:98:99:967,0,1430
chr3	430682	rs4685668	T	C	148.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.90;SOR=3.258;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr3	430729	rs11322571	GA	G	491.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=5.283;VQSLOD=6.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr3	431363	rs4685670	T	C	792.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.11;ReadPosRankSum=-1.383e+00;SOR=3.816;VQSLOD=16.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:383,27,0
chr3	439963	rs6442827	A	G	7855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=1.019;VQSLOD=19.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2305,222,0
chr3	440028	rs6771714	T	C	7131.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=0.934;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2022,224,0
chr3	440088	rs6771803	T	A	5171.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=1.888;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1374,123,0
chr3	440464	rs9833406	G	C	367.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=3.258;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr3	440946	rs2387184	G	A	1999.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=5.630;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:478,36,0
chr3	440977	rs2387185	G	A	1349.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.27;SOR=4.863;VQSLOD=21.03;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,7:7:21:273,21,0
chr3	447069	rs11705894	C	T	1643.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.38;DB;DP=12;ExcessHet=3.0103;FS=6.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=0.322;SOR=2.522;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:453,36,0
chr3	1214847	rs17034784	A	C	290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.410e-01;DB;DP=23;ExcessHet=3.0103;FS=1.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.771;SOR=0.256;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:299,0,323
chr3	1215013	rs7632166	A	C	2102.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DB;DP=83;ExcessHet=3.9794;FS=0.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.296;SOR=0.759;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,27:83:99:525,0,1352
chr3	1320271	rs3732517	G	A	1603.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=33;ExcessHet=6.9897;FS=0.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.552;SOR=0.771;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,11:33:99:310,0,572
chr3	1337162	rs2063243	A	G	679.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=0.453;SOR=0.957;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:431,0,154
chr3	1337203	rs565499	A	G	2837.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=0.640;SOR=0.636;VQSLOD=6.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1051,78,0
chr3	1339680	rs10558016	GGTTTTT	G	4955.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e-01;DB;DP=63;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-2.360e-01;SOR=0.709;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,29:63:99:1085,0,2249
chr3	1363304	rs72382613	CTTCTA	C	1926.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620e-01;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=-4.000e-03;SOR=0.779;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1935,0,2745
chr3	1367204	rs265781	C	T	75.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:74:81,0,74
chr3	1369404	rs265775	A	G	783.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=-1.950e-01;SOR=0.984;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:189,0,131
chr3	1394159	rs62230966	C	A	2195.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DB;DP=76;ExcessHet=3.9794;FS=5.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.828;SOR=1.098;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,33:76:99:928,0,1143
chr3	1415195	rs3765098	C	T	1578.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=16;ExcessHet=3.0103;FS=5.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=1.75;SOR=2.303;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:225,0,258
chr3	1418753	rs17038365	G	A	591.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=91;ExcessHet=3.0103;FS=5.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.50;ReadPosRankSum=-1.980e+00;SOR=1.283;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,30:91:99:600,0,1393
chr3	1424718	rs2291101	G	A	1502.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.869e+00;DB;DP=91;ExcessHet=3.0103;FS=3.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=0.432;SOR=0.388;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,59:91:99:1511,0,886
chr3	1424850	rs2291100	T	G	3487.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.640e-01;DB;DP=140;ExcessHet=3.9794;FS=3.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=4.000e-03;SOR=0.653;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,71:140:99:1701,0,1875
chr3	1427204	rs3902441	T	A	127.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=0.842;SOR=1.329;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:136,0,60
chr3	1442968	rs34787015	GAATT	G	276.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.100e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.595e+00;SOR=0.752;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,8:25:99:285,0,1017
chr3	1444243	rs13326014	A	G	1262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.13;DB;DP=44;ExcessHet=3.9794;FS=0.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=1.60;SOR=0.850;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,18:44:99:521,0,627
chr3	2613001	rs2616585	A	G	400.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=0.691;SOR=1.402;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:241,21,0
chr3	2670863	rs2600319	G	T	67.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:2670863_G_T:75,0,455:2670863
chr3	2670869	rs2600320	A	G	67.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.52;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:2670863_G_T:75,0,455:2670863
chr3	2670879	rs115154325	A	T	108.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.06;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:2670863_G_T:117,0,452:2670863
chr3	2670880	rs2600321	G	T	272.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=-5.980e-01;SOR=1.609;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:2670863_G_T:117,0,452:2670863
chr3	2777622	rs1554198	A	G	3630.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=62;ExcessHet=3.9794;FS=1.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=-6.600e-02;SOR=0.786;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,24:62:99:591,0,1002
chr3	2787532	rs4685547	A	G	617.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=-6.520e-01;SOR=1.609;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:96:96,0,141
chr3	2908335	rs6442761	A	G	273.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=2.19;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:117,0,100
chr3	2908667	rs35239662	C	T	270.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.570e-01;DB;DP=42;ExcessHet=3.0103;FS=3.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.43;ReadPosRankSum=0.279;SOR=1.368;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,12:42:99:279,0,880
chr3	2924686	rs4685575	G	A	220.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=3.912;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr3	2924986	rs13089241	A	G	1150.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=111;ExcessHet=3.0103;FS=1.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-3.910e-01;SOR=0.856;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,47:111:99:1159,0,1516
chr3	2928672	rs36013854	A	G	353.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.040e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=0.061;SOR=0.941;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:362,0,121
chr3	2968808	rs148044757	T	TA	587.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130e-01;DB;DP=22;ExcessHet=3.9794;FS=2.125;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-1.782e+00;SOR=0.272;VQSLOD=6.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,12:22:99:324,0,261
chr3	2969052	rs12490661	C	T	2158.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=106;ExcessHet=3.9794;FS=3.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=1.75;SOR=0.455;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1235,0,1378
chr3	3080509	rs7648232	C	T	311.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=1.08;SOR=1.096;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:266,0,255
chr3	3080527	rs163543	C	T	2022.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=3.611;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:819,63,0
chr3	3081825	rs339285	T	C	13285.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.11;SOR=0.736;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4401,426,0
chr3	3082025	rs4685596	G	T	1709.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=0.190;SOR=0.571;VQSLOD=7.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1126,90,0
chr3	3084279	rs7644007	C	T	459.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.189;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.66;ReadPosRankSum=0.189;SOR=2.448;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:368,27,0
chr3	3084653	rs6800354	C	T	2188.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.337e+00;DB;DP=51;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=-4.200e-02;SOR=0.905;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1671,110,0
chr3	3098041	rs163352	G	C	787.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.48;SOR=6.273;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
chr3	3115478	rs163897	T	C	5682.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.500e-01;DB;DP=138;ExcessHet=1.5490;FS=2.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=-8.770e-01;SOR=0.866;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,61:138:99:1406,0,1917
chr3	3118005	rs112570607	TTG	T	4855.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DB;DP=44;ExcessHet=3.0103;FS=3.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.21;ReadPosRankSum=-5.060e-01;SOR=0.360;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,29:44:99:1128,0,508
chr3	3118498	rs17882210	A	G	228.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.48;SOR=3.912;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	3137155	rs11389765	A	AT	3134.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.950e-01;DB;DP=59;ExcessHet=3.9794;FS=3.734;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-3.490e-01;SOR=1.029;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,27:59:99:603,0,670
chr3	3139383	rs334802	C	A	753.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.15;ReadPosRankSum=2.52;SOR=2.584;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	3139957	rs2290610	T	C	4424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=117;ExcessHet=6.9897;FS=11.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.166;SOR=1.231;VQSLOD=18.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,56:117:99:1482,0,1381
chr3	3143164	rs6808454	A	C	1360.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;DB;DP=25;ExcessHet=3.9794;FS=7.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=-3.730e-01;SOR=2.054;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:376,0,269
chr3	3143267	rs6771148	G	C	2489.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=45;ExcessHet=3.9794;FS=0.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=-3.770e-01;SOR=0.594;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,17:45:99:445,0,778
chr3	3144699	.	C	T	96.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.25;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:74:105,0,74
chr3	3170460	rs3884411	A	AGTT	660.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.91;SOR=5.549;VQSLOD=6.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	3170792	rs334773	C	T	10001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.49;SOR=1.428;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3100,275,0
chr3	3170910	rs334772	A	G	4783.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=2.176;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1495,144,0
chr3	3170966	rs4684375	T	C	271.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.070e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.675;SOR=0.892;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:280,0,162
chr3	3171023	rs334771	A	G	687.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.39;SOR=2.833;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:174,15,0
chr3	3171460	rs334769	C	T	3588.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=1.871;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1080,96,0
chr3	3171502	rs334768	C	A	3356.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110e+00;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=-8.000e-02;SOR=0.672;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,32:56:99:778,0,573
chr3	3171713	rs113671187	G	GCCTGACT	3524.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=1.863;VQSLOD=5.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1253,84,0
chr3	3178322	rs186743	G	A	2917.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.269;DB;DP=31;ExcessHet=3.0103;FS=4.321;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=0.148;SOR=1.189;VQSLOD=6.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1008,93,0
chr3	3178342	rs56033417	CT	C	581.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=13;ExcessHet=6.9897;FS=5.673;MQ=59.90;MQRankSum=0.00;QD=13.22;ReadPosRankSum=-4.160e-01;SOR=1.819;VQSLOD=4.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:129,0,118
chr3	3179262	rs334767	A	T	874.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=6.184;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr3	3182485	rs184579	A	G	657.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.77;POSITIVE_TRAIN_SITE;QD=31.47;SOR=5.670;VQSLOD=3.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr3	3182500	rs334760	G	C	550.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.72;POSITIVE_TRAIN_SITE;QD=31.48;SOR=5.283;VQSLOD=6.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr3	3188362	rs1672772	A	G	4725.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=48;ExcessHet=3.0103;FS=1.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=-2.260e-01;SOR=0.544;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,17:48:99:419,0,945
chr3	3189059	rs1621648	T	C	898.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.97;SOR=6.358;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:3189059_T_C:236,18,0:3189059
chr3	3189060	rs2306767	G	A	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=-4.310e-01;SOR=0.307;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:63:0|1:3189059_T_C:63,0,93:3189059
chr3	3189279	rs1705805	A	G	4684.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.602;DB;DP=41;ExcessHet=3.0103;FS=0.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.56;ReadPosRankSum=1.15;SOR=0.559;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:593,0,532
chr3	3189398	rs1669348	A	G	4161.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=41;ExcessHet=3.0103;FS=4.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=0.203;SOR=1.127;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:441,0,715
chr3	3192524	rs4183	A	ATAAC	3636.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=46;ExcessHet=3.9794;FS=1.656;MQ=59.96;MQRankSum=0.00;QD=26.55;ReadPosRankSum=0.898;SOR=0.913;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,20:46:99:777,0,1490
chr3	3193957	rs1705800	A	C	592.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.88;SOR=2.584;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr3	3195369	rs73005226	A	G	461.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DB;DP=13;ExcessHet=3.9794;FS=14.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=0.882;SOR=3.682;VQSLOD=11.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:238,0,201
chr3	3195574	rs3846135	C	T	1260.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=63;ExcessHet=3.9794;FS=5.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.814;SOR=1.085;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,24:63:99:542,0,986
chr3	3196273	rs11300080	AT	A	1239.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=3.312;VQSLOD=6.18;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:367,36,0
chr3	3197871	rs1705789	T	C	3027.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.87;SOR=1.711;VQSLOD=5.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:874,72,0
chr3	3209242	rs4685612	G	T	297.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.14;SOR=0.330;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:22:22,0,236
chr3	3209655	rs1672761	A	T	747.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=6.091;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:310,24,0
chr3	3214772	rs1619281	C	T	545.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=1.61;SOR=1.136;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:101,0,134
chr3	3215954	rs1669321	A	G	6290.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=33.46;SOR=1.949;VQSLOD=5.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2193,216,0
chr3	3216714	rs77585218	T	A	1632.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.773;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.28;ReadPosRankSum=1.07;SOR=5.892;VQSLOD=11.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:3216714_T_A:270,18,0:3216714
chr3	3216716	rs116480455	G	T	1761.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.671e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.10;ReadPosRankSum=0.909;SOR=5.943;VQSLOD=12.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:21:1|1:3216714_T_A:315,21,0:3216714
chr3	3216717	rs115361677	C	T	1848.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.439e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.55;ReadPosRankSum=0.909;SOR=5.943;VQSLOD=12.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:21:1|1:3216714_T_A:315,21,0:3216714
chr3	3216721	rs147502997	T	TG	1980.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.835;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.18;ReadPosRankSum=0.578;SOR=6.229;VQSLOD=4.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:24:1|1:3216714_T_A:360,24,0:3216714
chr3	3216723	.	G	GGA	2016.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.793;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.74;ReadPosRankSum=0.486;SOR=6.316;VQSLOD=5.25;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:3216714_T_A:360,24,0:3216714
chr3	3216724	.	C	CT	2016.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.711e+00;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.26;ReadPosRankSum=0.578;SOR=6.273;VQSLOD=3.87;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:3216714_T_A:360,24,0:3216714
chr3	3216725	rs148260930	C	A	2016.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.860e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.05;ReadPosRankSum=0.417;SOR=6.316;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:3216714_T_A:360,24,0:3216714
chr3	3217128	rs11332452	AT	A	876.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.39;SOR=4.047;VQSLOD=4.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:195,21,0
chr3	3221430	rs1672753	C	T	6050.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=66;ExcessHet=3.0103;FS=3.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=0.607;SOR=1.034;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,27:66:99:750,0,1069
chr3	3221573	rs71058683	G	GAACGCC	709.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.87;ReadPosRankSum=1.28;SOR=2.030;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,305
chr3	3868797	rs10780026	C	T	516.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=5.283;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:108,9,0
chr3	3886180	rs3749351	T	C	239.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=4.174;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	3886580	rs4685689	A	G	9308.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=0.972;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2742,261,0
chr3	3887876	rs2120609	T	C	4936.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.990e-01;DB;DP=72;ExcessHet=3.9794;FS=2.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.259;SOR=0.558;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2226,216,0
chr3	4046691	rs317588	G	A	681.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.080e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=0.712;SOR=1.981;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:63:245,0,63
chr3	4046731	rs317589	G	A	1005.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=0.243;SOR=1.132;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:447,0,129
chr3	4047054	rs9846908	T	G	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-1.015e+00;SOR=0.527;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:341,0,389
chr3	4354697	rs6801634	G	A	981.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.070e-01;DB;DP=100;ExcessHet=3.0103;FS=0.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.822;SOR=0.646;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,43:100:99:990,0,1478
chr3	4355674	rs149085570	C	G	41.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.88;ReadPosRankSum=1.83;SOR=0.307;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:50:50,0,148
chr3	4358210	rs7647539	A	G	2550.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=61;ExcessHet=1.5490;FS=1.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.501;SOR=0.688;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,21:61:99:498,0,1028
chr3	4403767	rs2819561	A	G	1588.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.935;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.81;ReadPosRankSum=0.852;SOR=0.574;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:751,54,0
chr3	4403817	rs2633851	T	A	3708.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.015e+00;DB;DP=39;ExcessHet=3.0103;FS=1.381;MQ=60.00;MQRankSum=0.00;QD=29.74;ReadPosRankSum=-7.540e-01;SOR=0.446;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:4403817_T_A:1755,117,0:4403817
chr3	4403818	rs35083095	T	C	3265.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.03;SOR=2.400;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:4403817_T_A:1755,117,0:4403817
chr3	4403837	rs2633852	A	G	4331.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.65;SOR=1.934;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1635,140,0
chr3	4404087	rs2819560	A	G	2659.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.017e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=-2.000e-01;SOR=0.793;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1130,96,0
chr3	4452737	rs813811	G	A	794.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.380e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=1.06;SOR=0.651;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:202,0,142
chr3	4459972	rs698209	A	G	1340.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.280e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=0.912;SOR=0.826;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:349,27,0
chr3	4461569	rs711667	G	A	1401.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.85;SOR=3.611;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:32:372,32,0
chr3	4461698	rs711666	C	T	5361.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=1.048;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1633,153,0
chr3	4562667	rs1038639	T	G	4136.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=50;ExcessHet=3.0103;FS=4.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=1.45;SOR=0.390;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1640,150,0
chr3	4683606	rs4685784	G	C	279.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=1.609;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr3	4685516	rs7652864	C	T	359.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=4.804;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
chr3	4687470	rs5846330	G	GCT	4521.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=44;ExcessHet=3.0103;FS=3.823;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.75;ReadPosRankSum=-6.550e-01;SOR=1.601;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,40:44:20:1363,0,20
chr3	4687548	rs4271897	A	G	2291.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.49;SOR=3.150;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:659,54,0
chr3	4687577	rs4303850	A	G	1026.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=3.056;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:454,42,0
chr3	4693462	rs7630678	T	C	1285.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=31.85;SOR=5.486;VQSLOD=6.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:417,30,0
chr3	4693493	rs149347290	G	T	399.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e+00;DB;DP=22;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-3.300e-01;SOR=2.049;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:408,0,364
chr3	4693553	rs3796336	C	A	4112.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=46;ExcessHet=3.0103;FS=2.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=-4.070e-01;SOR=0.471;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1651,137,0
chr3	4693656	rs6442894	C	T	14553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=1.374;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4654,436,0
chr3	4693937	rs6442895	G	C	9292.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.97;SOR=2.004;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2558,231,0
chr3	4694010	rs6442896	A	C	3980.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.17;ReadPosRankSum=1.17;SOR=1.712;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1139,99,0
chr3	4694068	rs6442897	C	G	1798.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.31;SOR=3.098;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:466,39,0
chr3	4703547	rs6801563	T	C	168.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=1.83;SOR=0.551;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:108,0,71
chr3	4712234	rs1994500	G	A	1953.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=27;ExcessHet=3.9794;FS=10.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=0.786;SOR=1.888;VQSLOD=17.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:229,0,459
chr3	4712413	rs2306875	G	A	4598.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.560e-01;DB;DP=54;ExcessHet=3.9794;FS=0.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=-3.550e-01;SOR=0.795;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:690,0,702
chr3	4712710	rs2306876	A	T	748.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.02;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:139,0,106
chr3	4718671	rs4685796	C	G	199.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.29;SOR=0.340;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:100,0,193
chr3	4725619	rs3215005	CA	C	1842.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.218;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.91;ReadPosRankSum=1.18;SOR=0.631;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:637,51,0
chr3	4725687	rs2306879	A	G	178.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=2.10;SOR=0.330;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:134,0,102
chr3	4726947	rs733018	T	G	1074.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=0.123;SOR=0.614;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:364,0,423
chr3	4732670	rs4685801	G	A	197.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-9.770e-01;SOR=1.609;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:206,0,194
chr3	4738653	rs3749381	T	C	253.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=1.50;SOR=2.303;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:56:262,0,56
chr3	4738774	rs3749382	A	G	956.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990e-01;DB;DP=68;ExcessHet=3.0103;FS=8.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-9.760e-01;SOR=0.185;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,38:68:99:965,0,755
chr3	4738999	.	G	GGT,GGTGTGT	1592.15	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.44;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;QD=23.07;ReadPosRankSum=-7.320e-01;SOR=0.627;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,11,10:24:99:693,383,395,243,0,441
chr3	4741821	rs9311395	A	G	136.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=-1.006e+00;SOR=0.941;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:145,0,102
chr3	4751802	rs3816835	T	G	742.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018e+00;DB;DP=29;ExcessHet=3.9794;FS=4.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.830;SOR=0.317;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,18:29:99:409,0,343
chr3	4753712	rs2306881	A	G	327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=37;ExcessHet=3.0103;FS=4.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.84;ReadPosRankSum=-2.288e+00;SOR=1.688;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,12:37:99:336,0,674
chr3	4767262	rs7613447	T	C	5604.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.884e+00;DB;DP=124;ExcessHet=1.5490;FS=2.526;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.99;ReadPosRankSum=-1.230e-01;SOR=0.893;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3673,371,0
chr3	4769090	rs34222640	AC	A	452.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=1.14;SOR=1.230;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:311,24,0
chr3	4809969	rs17041401	T	C	255.38	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=0.842;SOR=2.093;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr3	4810601	rs142461384	TC	T	179.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.99;ReadPosRankSum=0.239;SOR=0.214;VQSLOD=5.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:99:186,0,330
chr3	4817057	rs6442905	T	C	8879.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.94;SOR=1.001;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2821,273,0
chr3	4818792	rs4684443	T	C	195.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.431;SOR=0.859;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,102
chr3	4824131	rs6442907	T	C	2198.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=5.892;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:555,45,0
chr3	4829711	rs34491089	A	G	1776.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DB;DP=58;ExcessHet=3.9794;FS=4.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.851;SOR=1.164;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,37:58:99:968,0,433
chr3	4829732	rs13079522	A	G	3674.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.830e-01;DB;DP=63;ExcessHet=3.9794;FS=1.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=1.64;SOR=0.831;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1731,188,0
chr3	4856180	rs711631	T	C	7530.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=1.184;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2955,291,0
chr3	4856650	rs2304820	T	C	2034.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.005e+00;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=-1.211e+00;SOR=0.638;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1272,108,0
chr3	4856993	rs6442911	C	G	2308.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=5.353;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1044,84,0
chr3	4859725	rs9844268	G	A	3484.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=1.855;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1782,156,0
chr3	4872811	rs200839867	T	A	299.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.13;SOR=2.833;VQSLOD=4.73;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:4872811_T_A:134,9,0:4872811
chr3	4872813	rs5018278	T	A	354.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.862;DB;DP=3;ExcessHet=3.0103;FS=2.702;MQ=60.00;MQRankSum=0.00;QD=20.87;ReadPosRankSum=1.38;SOR=1.981;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:4872811_T_A:135,9,0:4872811
chr3	4872815	rs5018277	T	A	512.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.68;SOR=1.981;VQSLOD=3.91;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:4872811_T_A:135,9,0:4872811
chr3	4872832	.	C	CACACACACACACACACACAG	119.70	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.15;SOR=2.833;VQSLOD=4.26;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	4872854	rs73006940	G	C	35.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.67;SOR=1.609;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr3	4878335	rs2270747	T	C	144.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.40;SOR=3.258;VQSLOD=18.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	4927281	rs4685841	T	C	1547.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250e-01;DB;DP=28;ExcessHet=3.9794;FS=1.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=0.120;SOR=0.577;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:258,0,486
chr3	4927308	rs6794077	A	G	3256.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=2.063;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1020,102,0
chr3	4940288	rs11363851	AG	A	1342.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=3.086;VQSLOD=5.94;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:45:561,45,0
chr3	4940736	rs6808127	C	A	401.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.536;SOR=1.609;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:70:139,0,70
chr3	4942300	rs3762783	T	C	2203.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=78;ExcessHet=3.9794;FS=1.224;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.346;SOR=0.560;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,42:78:99:1136,0,805
chr3	4942430	rs3762784	G	A	658.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.562;SOR=0.824;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:187,0,353
chr3	5024415	rs11398309	A	AT	2857.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.829e+00;DB;DP=45;ExcessHet=3.0103;FS=1.630;MQ=59.79;MQRankSum=-2.140e-01;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=-1.281e+00;SOR=0.503;VQSLOD=1.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,41:45:24:977,24,0
chr3	5025514	rs139879256	G	GGT,GGTGT	3484.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.147;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=0.00;QD=27.20;ReadPosRankSum=1.37;SOR=1.519;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,7,16:24:99:896,489,448,184,0,164
chr3	5170218	.	C	T	594.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.150e-01;DP=55;ExcessHet=3.0103;FS=2.466;MQ=60.00;MQRankSum=0.00;QD=10.80;ReadPosRankSum=-7.600e-01;SOR=1.088;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,23:55:99:603,0,925
chr3	5170332	rs11710829	A	C	561.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.120;SOR=0.634;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:5170332_A_C:63,0,504:5170332
chr3	5170345	rs3864057	A	T	525.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.23;ReadPosRankSum=-1.440e-01;SOR=0.846;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:5170332_A_C:66,0,466:5170332
chr3	5214126	rs2270750	G	A	414.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=6.9897;FS=17.486;MQ=59.40;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.112;SOR=4.575;VQSLOD=-2.357e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,118
chr3	5241223	rs377120	C	T	5303.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.30;SOR=0.846;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2458,255,0
chr3	5241309	rs410509	C	A	5453.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=1.511;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2827,264,0
chr3	5246711	.	T	C	107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088e+00;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.15;ReadPosRankSum=-1.470e+00;SOR=0.941;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:116,0,296
chr3	6828364	rs1533434	A	G	2758.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=75;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=1.56;SOR=0.645;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,42:75:99:1149,0,780
chr3	6903297	rs3749380	C	T	7582.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=357;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=1.60;SOR=0.668;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:196,161:357:99:4054,0,4879
chr3	6903601	rs342034	A	G	10727.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=2.033;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3295,318,0
chr3	6904812	.	G	GTT	3061.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DP=101;ExcessHet=3.9794;FS=1.375;MQ=60.00;MQRankSum=0.00;QD=16.82;ReadPosRankSum=-3.830e-01;SOR=0.571;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,45:101:99:1529,0,1311
chr3	7188116	rs3749448	G	A	220.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.652;SOR=1.136;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:229,0,345
chr3	7188629	rs7624264	A	G	143.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-1.465e+00;SOR=0.180;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:61:151,0,61
chr3	7456675	rs712774	C	T	2219.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.02;DB;DP=25;ExcessHet=3.0103;FS=10.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=0.869;SOR=2.239;VQSLOD=17.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,24:25:33:871,33,0
chr3	7494245	.	TTG	T	2320.22	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DP=45;ExcessHet=3.9794;FS=14.111;MQ=60.00;MQRankSum=0.00;QD=21.09;ReadPosRankSum=0.990;SOR=2.000;VQSLOD=-4.700e-02;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,41:45:91:1338,91,0
chr3	7494417	rs2229902	A	T	1974.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.197;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1991,183,0
chr3	7620789	rs1485175	T	C	5400.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.525e+00;DB;DP=98;ExcessHet=3.9794;FS=11.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=-3.840e-01;SOR=0.662;VQSLOD=18.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3054,294,0
chr3	7621158	rs1485172	T	C	182.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=0.272;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr3	7649591	rs2139187	C	A	130.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=12;ExcessHet=3.0103;FS=5.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=1.53;SOR=1.930;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:139,0,194
chr3	7649747	rs146667493	A	AT	318.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.866;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=0.703;SOR=0.859;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,9:12:82:327,0,82
chr3	7649819	rs115155482	C	T	56.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.21;ReadPosRankSum=0.319;SOR=0.446;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,3:4:2:67,2,0
chr3	7678010	rs7611935	G	A	8644.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.997e+00;DB;DP=103;ExcessHet=3.0103;FS=2.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=-5.870e-01;SOR=0.939;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,59:103:99:1246,0,1026
chr3	7678090	rs7612048	G	A	5366.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=63;ExcessHet=3.0103;FS=2.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=-7.080e-01;SOR=1.051;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,31:63:99:899,0,791
chr3	7678134	rs17047754	C	T	2697.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=41;ExcessHet=3.9794;FS=0.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=-5.780e-01;SOR=0.843;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:524,0,490
chr3	7721613	rs162802	T	C	464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.091;SOR=0.199;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:204,0,133
chr3	7732726	rs5846531	AT	A	1476.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-02;DB;DP=18;ExcessHet=3.0103;FS=2.422;MQ=60.00;MQRankSum=0.00;QD=23.08;ReadPosRankSum=-3.560e-01;SOR=1.704;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:18:99:172,0,225
chr3	8299606	rs371460452	AAAGGAAGGAAGGAAGG	A,AAAGG	1295.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.38;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.61;SOR=4.174;VQSLOD=5.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,9,3:12:99:495,126,99,368,0,358
chr3	8496486	rs7651102	G	A	1207.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.870e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=0.849;SOR=0.600;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:8496486_G_A:147,0,511:8496486
chr3	8496487	rs7629563	C	A	1207.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=0.945;SOR=0.600;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:8496486_G_A:147,0,511:8496486
chr3	8543713	rs5846598	G	GT	9123.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=1.115;VQSLOD=4.70;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2535,220,0
chr3	8543757	rs2324625	A	C	2616.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DB;DP=65;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=0.937;SOR=0.669;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:670,0,918
chr3	8556617	rs12715649	A	G	3040.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=110;ExcessHet=3.9794;FS=0.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.370e-01;SOR=0.738;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,56:110:99:1305,0,1362
chr3	8556671	rs60137047	T	G	1528.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=119;ExcessHet=3.0103;FS=7.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-1.046e+00;SOR=1.146;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,56:119:99:1537,0,1504
chr3	8556784	rs12715650	A	C	1845.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509e+00;DB;DP=71;ExcessHet=3.9794;FS=3.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-2.130e-01;SOR=1.092;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,33:71:99:799,0,1055
chr3	8556909	rs6799564	T	C	301.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-1.074e+00;SOR=0.317;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:140,0,304
chr3	8608920	rs171408	G	A	807.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=12;ExcessHet=1.5490;FS=4.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=0.462;SOR=2.670;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:207,0,163
chr3	8667670	rs355056	G	C	1470.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.588e+00;DB;DP=13;ExcessHet=3.0103;FS=1.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=0.123;SOR=0.449;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:533,39,0
chr3	8667896	rs355058	T	C	21424.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=235;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.19;SOR=0.720;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,235:235:99:7188,703,0
chr3	8669361	rs1533001	C	A	3218.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=149;ExcessHet=3.9794;FS=0.893;MQ=60.00;MQRankSum=0.00;QD=11.02;ReadPosRankSum=2.20;SOR=0.764;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:76,73:149:99:0|1:8669361_C_A:1792,0,2008:8669361
chr3	8669367	rs5846608	TG	T	14352.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.850e-01;DB;DP=152;ExcessHet=3.0103;FS=0.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.96;ReadPosRankSum=0.427;SOR=0.585;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,152:152:99:1|1:8669361_C_A:6016,466,0:8669361
chr3	8669615	rs355055	G	C	3507.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.08;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.39;ReadPosRankSum=0.078;SOR=1.669;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1075,75,0
chr3	8671319	rs142926392	C	CTGACTCACCAGTGGTTCACAGA	4735.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.130e-01;DB;DP=62;ExcessHet=1.5490;FS=10.102;MQ=60.00;MQRankSum=0.00;QD=30.46;ReadPosRankSum=-1.292e+00;SOR=0.223;VQSLOD=2.17;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,62:62:99:3590,236,0
chr3	8675778	rs11131140	T	C	5370.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=1.305;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1608,150,0
chr3	8676204	rs3774210	A	G	13070.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=0.760;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4483,435,0
chr3	8676945	rs3816911	T	C	4651.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.041e+00;DB;DP=69;ExcessHet=3.0103;FS=7.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=0.276;SOR=0.338;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2074,207,0
chr3	8686191	rs164959	C	T	586.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=1.83;SOR=0.922;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:8686191_C_T:360,24,0:8686191
chr3	8686202	rs164960	A	C	533.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=-4.640e-01;SOR=1.863;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:8686191_C_T:400,27,0:8686191
chr3	8686368	rs241051	T	C	2286.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=118;ExcessHet=3.9794;FS=3.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=1.36;SOR=0.500;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,54:118:99:1353,0,1559
chr3	8701374	rs80210627	T	C	2692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=112;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=1.81;SOR=0.722;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,52:112:99:1307,0,1463
chr3	8701430	rs371133	T	C	7227.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=117;ExcessHet=3.9794;FS=4.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=0.087;SOR=0.584;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,54:117:99:1404,0,1545
chr3	8701871	rs1305154	C	G	153.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.88;SOR=3.258;VQSLOD=19.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	8705226	rs125698	G	T	318.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=1.44;SOR=0.527;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:102,0,114
chr3	8705555	rs34054872	T	C	895.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=57;ExcessHet=3.0103;FS=5.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.455;SOR=1.542;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:904,0,748
chr3	8729981	rs350813	G	A	1189.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DB;DP=45;ExcessHet=3.9794;FS=0.767;MQ=59.11;MQRankSum=-2.197e+00;QD=12.01;ReadPosRankSum=1.31;SOR=0.789;VQSLOD=-1.103e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,22:45:99:562,0,570
chr3	8730289	rs164450	C	G	779.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=68;ExcessHet=3.9794;FS=2.499;MQ=59.22;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.23;ReadPosRankSum=-7.820e-01;SOR=0.573;VQSLOD=-2.353e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,28:68:99:719,0,1072
chr3	8757311	rs17049469	G	C	1465.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010e+00;DB;DP=22;ExcessHet=1.5490;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=1.26;SOR=0.356;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:347,0,207
chr3	8757377	rs62242588	A	G	1315.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-1.650e-01;SOR=0.690;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:567,0,406
chr3	8775379	rs2072582	G	T	372.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=-2.290e-01;SOR=0.892;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,116
chr3	8809703	rs2228485	G	A	5978.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.199;DB;DP=84;ExcessHet=3.9794;FS=3.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.373;SOR=0.504;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2687,252,0
chr3	8816976	rs2270465	G	C	202.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:58:144,0,58
chr3	8931984	rs656626	A	C	5050.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=33.90;SOR=2.287;VQSLOD=5.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1044,96,0
chr3	8932189	rs607531	C	T	4954.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.050e-01;DB;DP=45;ExcessHet=3.0103;FS=0.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-9.910e-01;SOR=0.559;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1467,135,0
chr3	8932353	rs658339	A	G	616.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.33;SOR=5.549;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr3	8943988	rs464302	C	A	1477.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=15;ExcessHet=3.0103;FS=3.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=1.28;SOR=2.584;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,14:15:35:529,35,0
chr3	8955240	rs430781	T	C	4763.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=34.03;SOR=2.477;VQSLOD=5.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1512,135,0
chr3	8955389	rs373572	C	T	5469.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=74;ExcessHet=3.0103;FS=4.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=-1.200e-02;SOR=1.122;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2281,222,0
chr3	8988809	rs689296	C	T	1216.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=1.25;SOR=1.426;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:363,27,0
chr3	9005078	rs615967	C	T	16308.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=0.725;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5088,489,0
chr3	9034558	rs511815	C	T	4468.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=64;ExcessHet=3.9794;FS=0.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-5.400e-02;SOR=0.753;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,27:64:99:686,0,1042
chr3	9036010	rs637172	T	G	5080.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DB;DP=93;ExcessHet=6.9897;FS=1.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.390;SOR=0.818;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,42:93:99:1078,0,1325
chr3	9055293	rs35295033	G	T	1058.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.949e+00;DB;DP=26;ExcessHet=3.9794;FS=11.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=0.044;SOR=0.477;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:486,0,390
chr3	9066853	rs421041	T	C	8585.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=125;ExcessHet=3.0103;FS=1.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=-1.201e+00;SOR=0.839;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,60:125:99:1511,0,1527
chr3	9069747	rs416685	A	G	4644.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.110e-01;DB;DP=46;ExcessHet=3.0103;FS=3.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=-1.731e+00;SOR=1.231;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,30:46:99:792,0,385
chr3	9069873	rs10510396	A	G	2229.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=40;ExcessHet=6.9897;FS=1.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-1.640e+00;SOR=0.540;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:530,0,462
chr3	9074617	rs9839715	C	T	90.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.366;SOR=0.283;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:98:98,0,234
chr3	9089254	rs2244864	C	G	5027.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.521e+00;DB;DP=74;ExcessHet=3.9794;FS=3.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=0.304;SOR=0.471;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,50:74:99:1362,0,638
chr3	9089384	rs1622607	C	A	462.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=-5.450e-01;SOR=0.527;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:137,0,149
chr3	9090905	rs611406	C	T	875.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=0.312;SOR=0.730;VQSLOD=6.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:169,0,268
chr3	9091151	rs610457	C	G	8200.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.390e-01;DB;DP=119;ExcessHet=3.0103;FS=3.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=-1.912e+00;SOR=0.964;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,50:119:99:1224,0,1843
chr3	9097569	rs146660097	TTTTG	T	158.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=-1.282e+00;SOR=1.981;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:40:165,0,40
chr3	9102137	rs6775479	G	C	1238.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=22;ExcessHet=3.9794;FS=2.043;MQ=59.66;MQRankSum=0.894;NEGATIVE_TRAIN_SITE;QD=24.29;ReadPosRankSum=3.29;SOR=0.320;VQSLOD=-1.626e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,11:22:99:454,0,437
chr3	9122948	rs2664089	A	G	11215.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=0.763;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3284,303,0
chr3	9166281	rs735253	G	C	1208.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=0.984;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1225,111,0
chr3	9406661	rs2728949	G	A	429.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.030e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.84;ReadPosRankSum=-7.120e-01;SOR=0.610;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:380,27,0
chr3	9406836	rs1054975	T	C	2826.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=1.36;SOR=0.661;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1788,174,0
chr3	9407022	rs2648536	T	C	9756.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.399;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=1.89;SOR=0.678;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3980,391,0
chr3	9408443	rs2648535	A	C	922.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.790e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=1.43;SOR=0.639;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:507,45,0
chr3	9422210	rs2596916	T	C	3054.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.26;DB;DP=41;ExcessHet=3.9794;FS=1.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=-1.582e+00;SOR=0.812;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1400,123,0
chr3	9424625	rs2600194	C	G	500.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.226;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=1.02;SOR=0.507;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr3	9425743	rs2600193	A	G	689.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.18;SOR=5.670;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr3	9425911	rs1129170	G	A	2960.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.583;DB;DP=58;ExcessHet=3.9794;FS=0.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.212;SOR=0.636;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1828,174,0
chr3	9489767	rs2258735	T	C	2383.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=2.531;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:769,60,0
chr3	9495385	rs2648580	A	G	3564.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=24.59;SOR=2.279;VQSLOD=3.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1633,141,0
chr3	9547950	rs2625890	G	C	8446.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DB;DP=111;ExcessHet=3.9794;FS=2.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.73;ReadPosRankSum=1.54;SOR=0.566;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,59:111:99:0|1:9547950_G_C:2281,0,2795:9547950
chr3	9547959	rs2625889	C	T	8093.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=104;ExcessHet=3.9794;FS=1.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.65;ReadPosRankSum=0.334;SOR=0.583;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,58:104:99:0|1:9547950_G_C:2293,0,2645:9547950
chr3	9593781	rs62245570	G	T	94.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-5.450e-01;SOR=0.693;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:103,0,145
chr3	9691526	rs11706340	T	C	1150.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=38;ExcessHet=3.9794;FS=1.961;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=1.29;SOR=1.013;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:531,0,561
chr3	9692087	rs56310367	G	A	3100.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=97;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.664;SOR=0.714;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,48:97:99:1316,0,1303
chr3	9710307	rs12493353	T	C	2765.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e+00;DB;DP=90;ExcessHet=3.9794;FS=1.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=1.49;SOR=0.558;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,50:90:99:1299,0,1098
chr3	9730868	rs159142	G	C	3393.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=8.714;VQSLOD=25.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1403,96,0
chr3	9731644	rs114710124	G	A	165.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.175;SOR=0.223;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:174,0,193
chr3	9743398	rs144534173	TGGAG	T	10221.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.80;SOR=1.319;VQSLOD=5.01;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2369,160,0
chr3	9757086	rs697820	C	G	4057.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=0.978;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4074,399,0
chr3	9757511	rs3914774	T	C	32.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:41:41,0,69
chr3	9757754	rs708571	G	A	809.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=56;ExcessHet=3.0103;FS=1.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-4.280e-01;SOR=0.676;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,34:56:99:818,0,486
chr3	9757993	rs697819	T	C	75.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.92;SOR=2.303;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr3	9768336	rs3868893	C	G	3137.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=140;ExcessHet=3.9794;FS=4.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=0.125;SOR=0.731;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,67:140:99:1578,0,1851
chr3	9769008	rs3891072	A	T	2581.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=82;ExcessHet=3.9794;FS=8.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.392;SOR=1.259;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,32:82:99:920,0,1404
chr3	9783147	rs696513	A	G	970.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=39;ExcessHet=3.9794;FS=4.313;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.660;SOR=1.371;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:498,0,667
chr3	9788168	rs2269112	C	T	550.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.243e+00;DB;DP=44;ExcessHet=3.0103;FS=1.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.188;SOR=0.446;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:559,0,602
chr3	9802599	rs7617500	G	C	274.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-2.287e+00;SOR=0.693;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:124,0,174
chr3	9803126	rs17252807	A	G	1253.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.007e+00;DB;DP=36;ExcessHet=6.9897;FS=1.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-3.570e-01;SOR=0.456;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,22:36:99:574,0,392
chr3	9809082	rs293796	T	C	876.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=0.431;SOR=1.148;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:31:31,0,153
chr3	9822275	rs3868897	C	T	1341.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.15;ReadPosRankSum=-1.581e+00;SOR=5.728;VQSLOD=13.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,10:11:12:376,0,12
chr3	9829171	rs2290309	G	A	2753.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;DB;DP=71;ExcessHet=6.9897;FS=1.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-3.600e-02;SOR=0.785;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,27:71:99:702,0,1276
chr3	9829226	rs293786	A	C	2905.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=65;ExcessHet=6.9897;FS=5.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-1.160e-01;SOR=1.043;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,24:65:99:699,0,1083
chr3	9841989	rs6443266	A	G	2800.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DB;DP=36;ExcessHet=3.0103;FS=1.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.54;ReadPosRankSum=-9.400e-01;SOR=0.960;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:254,0,564
chr3	9851643	rs71626937	G	GGGGCGCGGGATCAGGGGCCCTGGGAGGGC	612.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.96;SOR=2.093;VQSLOD=4.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:15:225,15,0
chr3	9852059	rs34761997	C	CGAT	4055.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.00;QD=32.22;ReadPosRankSum=-1.376e+00;SOR=0.596;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,14:29:99:543,0,660
chr3	9852148	rs9827444	G	A	699.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.740;DB;DP=16;ExcessHet=3.9794;FS=5.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=0.724;SOR=0.365;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:242,0,290
chr3	9854450	rs4020750	A	G	428.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=1.14;SOR=1.493;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:222,0,175
chr3	9857514	rs7652460	A	G	637.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=-3.280e-01;SOR=1.022;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:73:73,0,113
chr3	9859198	rs11131190	G	A	270.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=8;ExcessHet=3.9794;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=1.01;SOR=0.136;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:143,0,111
chr3	9859456	rs3806672	C	G	1869.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445e+00;DB;DP=82;ExcessHet=3.9794;FS=0.602;MQ=60.00;MQRankSum=0.00;QD=12.30;ReadPosRankSum=-7.320e-01;SOR=0.688;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,42:82:99:928,0,988
chr3	9859777	rs3806670	G	T	72.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.95;SOR=2.303;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	9867625	rs3732527	C	T	9933.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DB;DP=285;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.321;SOR=0.656;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:158,127:285:99:2988,0,4097
chr3	9868577	rs12490900	A	G	1392.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.010e+00;DB;DP=29;ExcessHet=6.9897;FS=2.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.506;SOR=1.499;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,19:29:99:578,0,323
chr3	9870857	rs2290303	G	A	3332.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.820e-01;DB;DP=160;ExcessHet=3.9794;FS=2.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.05;SOR=0.542;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,78:160:99:1957,0,2183
chr3	9871030	rs2290305	T	G	3167.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=83;ExcessHet=6.9897;FS=6.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=0.288;SOR=0.385;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1186,0,964
chr3	9874670	rs7622954	G	A	2437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=36;ExcessHet=6.9897;FS=0.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=0.476;SOR=0.531;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:563,0,496
chr3	9876301	rs13088594	G	T	11033.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.580e-01;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.35;ReadPosRankSum=-1.001e+00;SOR=0.750;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1594,0,1484
chr3	9885022	rs3846165	T	C	3550.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=38;ExcessHet=3.0103;FS=5.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.70;ReadPosRankSum=1.21;SOR=2.282;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,15:38:99:501,0,782
chr3	9896351	rs279563	A	G	8779.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.60;SOR=1.697;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3240,299,0
chr3	9908749	rs1053239	G	C	516.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.524e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=-9.340e-01;SOR=0.631;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:525,0,235
chr3	9932337	rs279558	G	C	1089.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=3.477;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1106,93,0
chr3	9934428	rs2279795	T	C	240.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;DB;DP=17;ExcessHet=3.0103;FS=2.077;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-1.431e+00;SOR=1.426;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:249,0,183
chr3	9934605	rs279553	T	C	3046.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.16;SOR=1.081;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3063,302,0
chr3	9944167	rs279589	G	A	543.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-01;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=-5.060e-01;SOR=0.784;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,26:64:99:552,0,919
chr3	9944937	rs279588	G	T	1820.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092e+00;DB;DP=55;ExcessHet=3.9794;FS=0.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.413;SOR=0.784;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:759,0,829
chr3	9947864	rs279583	T	C	187.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=-6.520e-01;SOR=0.527;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr3	9947898	rs279582	T	A	158.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.840e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.24;SOR=0.693;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:34,6,0
chr3	9947997	rs279581	C	T	755.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e-01;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=-7.430e-01;SOR=0.693;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:310,0,290
chr3	9948241	rs279580	G	A	123.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=0.608;SOR=1.329;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:132,0,216
chr3	9949634	rs279576	A	C	130.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-4.640e-01;SOR=0.804;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:9949634_A_C:75,0,454:9949634
chr3	9949647	rs279575	C	A	133.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:9949634_A_C:75,0,454:9949634
chr3	9949659	rs432815	T	A	127.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:72:0|1:9949634_A_C:72,0,521:9949634
chr3	9949661	rs432813	T	C	127.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.08;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:72:0|1:9949634_A_C:72,0,521:9949634
chr3	9952706	rs279572	A	G	3419.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.730e-01;DB;DP=134;ExcessHet=3.9794;FS=3.507;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.190e-01;SOR=0.518;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,73:134:99:1780,0,1557
chr3	9952788	rs279571	T	C	4013.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=162;ExcessHet=3.9794;FS=1.870;MQ=59.95;MQRankSum=0.936;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-5.940e-01;SOR=0.825;VQSLOD=2.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,89:162:99:2308,0,1743
chr3	9956279	rs455863	G	A	2974.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=154;ExcessHet=3.9794;FS=0.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.870e-01;SOR=0.734;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,69:154:99:1514,0,2106
chr3	9956894	rs693802	C	T	404.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.688;DB;DP=15;ExcessHet=3.9794;FS=1.967;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-8.050e-01;SOR=0.275;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:175,0,266
chr3	9957455	rs1056286	C	T	4588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.074;DB;DP=188;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.539;SOR=0.712;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,112:188:99:2894,0,1790
chr3	9960070	rs708567	C	T	1739.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.449e+00;DB;DP=61;ExcessHet=3.9794;FS=0.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-2.560e-01;SOR=0.788;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,35:61:99:848,0,702
chr3	9961952	rs34984419	GC	G	354.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=14;ExcessHet=3.9794;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.081;SOR=0.148;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:179,0,251
chr3	9962157	rs783494	T	C	2057.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.580e-01;DB;DP=96;ExcessHet=3.9794;FS=4.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-1.010e-01;SOR=0.460;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,45:96:99:1121,0,1388
chr3	9962767	rs34198416	TATTC	T	3223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.394;DB;DP=63;ExcessHet=3.9794;FS=2.257;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=-1.600e-01;SOR=0.489;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,41:63:99:1656,0,800
chr3	9962816	rs376511	A	G	3020.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;DB;DP=59;ExcessHet=3.9794;FS=8.615;MQ=59.92;MQRankSum=0.725;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=0.656;SOR=1.315;VQSLOD=0.468;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,19:59:99:463,0,1046
chr3	9962910	rs372559	A	G	765.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=2.45;SOR=0.223;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:149,0,380
chr3	9969932	rs57179462	TGG	T	14296.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120e+00;DB;DP=157;ExcessHet=3.0103;FS=0.719;MQ=60.00;MQRankSum=0.00;QD=28.58;ReadPosRankSum=0.918;SOR=0.610;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:74,83:157:99:3206,0,2846
chr3	9970031	rs279549	A	G	21658.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.94;SOR=0.859;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,279:279:99:8540,837,0
chr3	9970158	rs279548	C	T	2871.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=213;ExcessHet=3.0103;FS=1.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.470e-01;SOR=0.618;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,109:213:99:2880,0,2584
chr3	9970442	rs279547	C	T	1904.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-01;DB;DP=33;ExcessHet=1.5490;FS=4.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=-1.177e+00;SOR=1.378;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,8:33:99:195,0,795
chr3	9972484	rs114773724	T	C	847.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=57;ExcessHet=3.0103;FS=1.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=1.23;SOR=0.446;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,30:57:99:0|1:9972484_T_C:856,0,733:9972484
chr3	9972493	rs279545	G	A	5694.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=1.508;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,72:72:99:1|1:9972484_T_C:2767,216,0:9972484
chr3	9974543	rs148575246	G	C	2665.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DB;DP=216;ExcessHet=3.0103;FS=5.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-6.560e-01;SOR=0.430;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,103:216:99:2674,0,2853
chr3	9975247	rs183956	C	G	12896.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.62;SOR=2.720;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4546,402,0
chr3	9975353	rs279551	A	G	2175.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.96;SOR=6.666;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:629,48,0
chr3	9975386	rs2270894	C	G	118.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.795e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=-4.560e-01;SOR=0.330;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:127,0,261
chr3	9976159	rs279552	A	G	11645.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.35;SOR=1.500;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4135,378,0
chr3	9991388	rs279601	G	C	18150.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=252;ExcessHet=0.4576;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.35;SOR=0.740;VQSLOD=4.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,252:252:99:8189,756,0
chr3	10018739	.	TA	T	44.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DP=21;ExcessHet=3.9794;FS=1.589;MQ=59.83;MQRankSum=0.00;QD=1.03;ReadPosRankSum=-5.200e-01;SOR=0.330;VQSLOD=5.11;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,3:21:16:16,0,407
chr3	10077770	.	CTT	C	219.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.451;DP=5;ExcessHet=6.9897;FS=0.000;MQ=59.67;MQRankSum=0.524;QD=10.98;ReadPosRankSum=0.253;SOR=0.293;VQSLOD=0.357;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:38:38,0,77
chr3	10085035	rs803335	G	T	1713.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.110e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.05;ReadPosRankSum=-3.570e-01;SOR=0.614;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:345,0,183
chr3	10088223	rs200221245	T	G	71.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=31;ExcessHet=3.0103;FS=8.572;MQ=60.00;MQRankSum=0.00;QD=2.30;ReadPosRankSum=-7.380e-01;SOR=2.862;VQSLOD=12.79;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,4:31:80:80,0,776
chr3	10088239	rs201770712	G	A	58.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=39;ExcessHet=3.9794;FS=14.081;MQ=60.00;MQRankSum=0.00;QD=0.71;ReadPosRankSum=0.788;SOR=3.611;VQSLOD=9.13;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,4:39:63:0|1:10088239_G_A:63,0,1611:10088239
chr3	10088242	rs199726231	G	A	55.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=40;ExcessHet=3.9794;FS=13.998;MQ=60.00;MQRankSum=0.00;QD=0.67;ReadPosRankSum=0.992;SOR=3.567;VQSLOD=9.16;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,4:40:60:0|1:10088239_G_A:60,0,1645:10088239
chr3	10088266	rs72492997	G	T	218.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=46;ExcessHet=3.9794;FS=3.997;MQ=59.43;MQRankSum=-1.798e+00;NEGATIVE_TRAIN_SITE;QD=2.37;ReadPosRankSum=-5.120e-01;SOR=1.358;VQSLOD=-2.583e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,10:46:99:169,0,1114
chr3	10088299	rs112887807	C	T	510.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.130e-01;DB;DP=56;ExcessHet=6.9897;FS=7.150;MQ=57.46;MQRankSum=-1.281e+00;NEGATIVE_TRAIN_SITE;QD=2.87;ReadPosRankSum=-9.000e-02;SOR=1.216;VQSLOD=-2.015e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,12:56:99:0|1:10088299_C_T:361,0,1875:10088299
chr3	10088308	rs72492998	T	C	519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420e-01;DB;DP=54;ExcessHet=6.9897;FS=7.273;MQ=57.16;MQRankSum=-1.028e+00;NEGATIVE_TRAIN_SITE;QD=2.97;ReadPosRankSum=0.342;SOR=1.197;VQSLOD=-1.942e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,12:54:99:0|1:10088299_C_T:367,0,1833:10088299
chr3	10088343	rs73126218	A	G	287.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DB;DP=48;ExcessHet=3.9794;FS=2.829;MQ=55.28;MQRankSum=-1.387e+00;NEGATIVE_TRAIN_SITE;QD=2.96;ReadPosRankSum=1.06;SOR=0.434;VQSLOD=-3.250e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,11:48:99:214,0,906
chr3	10088404	.	C	T	481.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780e-01;DP=23;ExcessHet=6.9897;FS=1.361;MQ=49.91;MQRankSum=-1.476e+00;NEGATIVE_TRAIN_SITE;QD=5.35;ReadPosRankSum=0.797;SOR=0.346;VQSLOD=-3.428e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,6:23:99:0|1:10088404_C_T:201,0,675:10088404
chr3	10088422	rs144167368	C	T	349.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.680e-01;DB;DP=19;ExcessHet=6.9897;FS=2.021;MQ=48.67;MQRankSum=-2.929e+00;QD=5.07;ReadPosRankSum=0.373;SOR=0.233;VQSLOD=-3.438e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,4:19:99:0|1:10088404_C_T:162,0,654:10088404
chr3	10088443	rs145517746	C	A	253.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=48.50;MQRankSum=-2.416e+00;QD=7.91;ReadPosRankSum=0.568;SOR=0.646;VQSLOD=-3.621e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:10088443_C_A:144,0,319:10088443
chr3	10088444	rs142624538	A	G	253.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.155;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=48.50;MQRankSum=-2.416e+00;QD=7.91;ReadPosRankSum=0.568;SOR=0.646;VQSLOD=-3.620e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:10088443_C_A:144,0,319:10088443
chr3	10088461	rs150415982	T	C	199.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=7;ExcessHet=3.9794;FS=2.722;MQ=49.68;MQRankSum=-1.006e+00;NEGATIVE_TRAIN_SITE;QD=7.99;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=-2.357e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:102,0,137
chr3	10089497	rs114101942	C	T	31.68	PASS	AC=1;AF=0.500;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=50.99;NEGATIVE_TRAIN_SITE;QD=31.68;SOR=1.609;VQSLOD=-5.836e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:0,1:1:39:0|1:10089497_C_T:39,0,73:10089497
chr3	10089499	rs200073821	A	G	31.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=54.16;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=-2.762e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:10089497_C_T:39,0,73:10089497
chr3	10089509	rs77520528	A	G	72.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=50.99;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=24.19;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=-2.470e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:80,0,32
chr3	10089549	rs113574694	TACTA	T	319.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=55.73;MQRankSum=-2.655e+00;QD=12.77;ReadPosRankSum=-2.720e-01;SOR=0.297;VQSLOD=-5.920e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:198,0,172
chr3	10089723	rs12330369	G	A	2538.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DB;DP=107;ExcessHet=6.9897;FS=4.225;MQ=59.90;MQRankSum=-1.771e+00;NEGATIVE_TRAIN_SITE;QD=8.06;ReadPosRankSum=2.41;SOR=0.533;VQSLOD=-8.008e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:66,41:107:99:1147,0,1534
chr3	10089738	rs62245508	A	G	2565.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DB;DP=111;ExcessHet=6.9897;FS=4.989;MQ=59.91;MQRankSum=-1.887e+00;QD=7.87;ReadPosRankSum=1.22;SOR=0.778;VQSLOD=-1.770e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:70,41:111:99:1164,0,1662
chr3	10089749	rs12330599	T	C	2435.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DB;DP=111;ExcessHet=6.9897;FS=4.246;MQ=59.90;MQRankSum=-1.908e+00;QD=7.57;ReadPosRankSum=-1.750e-01;SOR=0.890;VQSLOD=0.026;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:70,41:111:99:1110,0,1700
chr3	10089772	rs79830642	C	G	2686.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=105;ExcessHet=6.9897;FS=10.474;MQ=59.90;MQRankSum=-1.892e+00;NEGATIVE_TRAIN_SITE;QD=8.70;ReadPosRankSum=-2.094e+00;SOR=1.235;VQSLOD=-2.335e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,38:105:99:0|1:10089772_C_G:1394,0,3129:10089772
chr3	10089773	rs7615646	A	G	2692.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.012;DB;DP=105;ExcessHet=6.9897;FS=10.699;MQ=59.90;MQRankSum=-1.930e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=-2.234e+00;SOR=1.284;VQSLOD=-6.871e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,38:105:99:0|1:10089772_C_G:1394,0,3129:10089772
chr3	10089775	rs75389047	A	G	2578.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DB;DP=105;ExcessHet=6.9897;FS=12.074;MQ=59.89;MQRankSum=-1.956e+00;NEGATIVE_TRAIN_SITE;QD=8.57;ReadPosRankSum=-2.441e+00;SOR=1.333;VQSLOD=-2.616e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,38:105:99:0|1:10089772_C_G:1394,0,3129:10089772
chr3	10089852	rs75274508	A	G	470.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=48;ExcessHet=6.9897;FS=27.123;MQ=60.00;MQRankSum=0.00;QD=3.20;ReadPosRankSum=0.938;SOR=4.501;VQSLOD=5.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:39,9:48:99:248,0,1140
chr3	10089886	rs73811818	G	T	228.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.430e-01;DB;DP=21;ExcessHet=6.9897;FS=4.635;MQ=60.00;MQRankSum=0.00;QD=2.79;ReadPosRankSum=-8.970e-01;SOR=1.871;VQSLOD=19.41;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,4:21:99:0|1:10089886_G_T:113,0,1604:10089886
chr3	10089906	rs372506747	C	A	117.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.50;ReadPosRankSum=1.59;SOR=0.243;VQSLOD=20.64;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,3:17:84:0|1:10089886_G_T:84,0,1528:10089886
chr3	10091252	rs77076948	A	C	375.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.993e+00;DB;DP=32;ExcessHet=3.9794;FS=2.258;MQ=47.64;MQRankSum=-3.036e+00;QD=5.95;ReadPosRankSum=0.677;SOR=0.166;VQSLOD=-3.326e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,6:32:99:0|1:10091252_A_C:174,0,1569:10091252
chr3	10091261	rs80128604	G	A	412.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184e+00;DB;DP=25;ExcessHet=3.9794;FS=5.749;MQ=47.54;MQRankSum=-1.904e+00;QD=8.77;ReadPosRankSum=-5.170e-01;SOR=0.100;VQSLOD=-1.981e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,6:25:99:0|1:10091252_A_C:192,0,1352:10091252
chr3	10106144	rs3864015	C	T	884.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.477e+00;DB;DP=87;ExcessHet=3.0103;FS=1.776;MQ=54.61;MQRankSum=-6.956e+00;QD=10.16;ReadPosRankSum=0.859;SOR=0.984;VQSLOD=-5.260e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,37:87:99:893,0,1502
chr3	10106608	.	T	C	278.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.159e+00;DP=29;ExcessHet=3.0103;FS=0.000;MQ=56.96;MQRankSum=-3.397e+00;NEGATIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=-1.935e+00;SOR=0.317;VQSLOD=-2.812e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:287,0,610
chr3	10106623	.	C	T	100.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027e+00;DP=17;ExcessHet=3.0103;FS=0.000;MQ=55.44;MQRankSum=-3.884e+00;NEGATIVE_TRAIN_SITE;QD=5.90;ReadPosRankSum=-9.650e-01;SOR=0.120;VQSLOD=-3.732e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:99:109,0,504
chr3	10109060	rs138608601	C	G	875.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523e+00;DB;DP=69;ExcessHet=3.0103;FS=2.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.324;SOR=0.972;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:884,0,868
chr3	10128965	.	CT	C	273.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.61;ReadPosRankSum=0.667;SOR=0.664;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:25:99:182,0,114
chr3	10143061	.	CT	C	658.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DP=25;ExcessHet=3.9794;FS=2.764;MQ=59.89;MQRankSum=0.00;QD=11.55;ReadPosRankSum=0.817;SOR=1.325;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,12:25:99:200,0,107
chr3	10186180	.	CT	C	53.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.33;ReadPosRankSum=-1.465e+00;SOR=2.584;VQSLOD=4.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:7:43:43,0,70
chr3	10188010	rs35286098	AC	A	225.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.03;ReadPosRankSum=-8.870e-01;SOR=2.093;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:45:234,0,45
chr3	10188428	rs1678607	T	G	2730.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-02;DB;DP=38;ExcessHet=3.9794;FS=15.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=-1.690e-01;SOR=2.442;VQSLOD=12.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,25:38:99:872,0,344
chr3	10189929	rs1681660	T	C	2211.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=38;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=-1.009e+00;SOR=0.818;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:526,0,410
chr3	10219510	rs1711109	C	T	2409.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.156e+00;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=1.01;SOR=0.243;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,80:81:99:2426,201,0
chr3	10219729	rs1681663	A	G	1109.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.05;SOR=4.407;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:537,39,0
chr3	10241899	rs263409	G	A	570.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=2.448;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:212,18,0
chr3	10241987	rs263410	A	C	618.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.35;SOR=2.303;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:339,30,0
chr3	10242343	rs708032	G	A	157.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=0.693;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr3	10251196	rs459864	A	G	3347.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=2.076;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1631,135,0
chr3	10254642	rs11465892	C	T	106.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.24;SOR=2.833;VQSLOD=19.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr3	10254797	rs11465897	C	A	1060.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=1.609;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1077,102,0
chr3	10258493	rs2302862	T	C	1576.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.81;DB;DP=32;ExcessHet=1.5490;FS=1.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=0.595;SOR=1.251;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1248,96,0
chr3	10258514	rs2302861	T	C	1800.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.200e-02;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=-1.820e-01;SOR=0.836;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1419,125,0
chr3	10258762	rs2302860	G	C	3091.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.020e-01;DB;DP=72;ExcessHet=1.5490;FS=0.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-3.850e-01;SOR=0.826;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2256,216,0
chr3	10261138	rs137902588	GACT	G	478.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.58;SOR=3.442;VQSLOD=6.24;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:33:495,33,0
chr3	10261237	rs3895949	A	C	2247.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.28;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.71;ReadPosRankSum=-4.310e-01;SOR=0.765;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1439,117,0
chr3	10261248	rs3895948	T	C	2650.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.449e+00;DB;DP=52;ExcessHet=1.5490;FS=3.225;MQ=60.00;MQRankSum=0.00;QD=21.38;ReadPosRankSum=-1.307e+00;SOR=0.367;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1766,156,0
chr3	10261294	rs3895947	A	G	7696.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=22.29;SOR=1.451;VQSLOD=0.812;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,94:94:99:1|1:10261294_A_G:4200,286,0:10261294
chr3	10261295	rs11465909	C	T	4183.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=0.4576;FS=0.000;MQ=59.86;POSITIVE_TRAIN_SITE;QD=27.63;SOR=1.561;VQSLOD=4.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,95:95:99:1|1:10261294_A_G:4200,286,0:10261294
chr3	10261689	rs2302859	G	C	486.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=0.880;SOR=1.493;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:313,21,0
chr3	10302479	rs402330	G	A	1249.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=5.486;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:367,27,0
chr3	10319720	rs4684675	G	T	340.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.366;SOR=0.269;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:298,27,0
chr3	10320865	rs2075355	A	G	1133.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.630e-01;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=-6.180e-01;SOR=0.726;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:749,57,0
chr3	10320968	rs1063429	T	A	108.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.22;SOR=2.833;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr3	10342876	rs696221	C	T	3770.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DB;DP=95;ExcessHet=1.5490;FS=1.322;MQ=59.95;MQRankSum=0.786;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=-7.290e-01;SOR=0.557;VQSLOD=2.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,35:95:99:847,0,1720
chr3	10346996	rs200033116	T	TA	695.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.661e+00;DB;DP=23;ExcessHet=1.5490;FS=6.264;MQ=60.00;MQRankSum=0.00;QD=17.40;ReadPosRankSum=-1.460e+00;SOR=0.151;VQSLOD=4.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,10:23:99:219,0,320
chr3	10359462	rs28349	A	G	1814.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=1.445;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:738,66,0
chr3	10370486	rs4327369	G	C	6222.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724e+00;DB;DP=164;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=-1.864e+00;SOR=0.728;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,78:164:99:2012,0,2392
chr3	10373396	.	AT	A	198.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=1.38;SOR=1.179;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:41:41,0,41
chr3	10379923	rs35678	C	T	10450.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=178;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=-1.140e-01;SOR=0.678;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,86:178:99:2046,0,2269
chr3	10380209	rs28131	T	C	297.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=20;ExcessHet=3.9794;FS=4.173;MQ=58.28;MQRankSum=1.40;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.07;ReadPosRankSum=1.15;SOR=1.739;VQSLOD=-1.071e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,7:20:99:202,0,258
chr3	10381784	rs154243	A	G	867.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.38;ReadPosRankSum=-1.033e+00;SOR=1.402;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:185,0,150
chr3	10382111	rs171337	T	C	15952.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.46;DB;DP=188;ExcessHet=3.0103;FS=1.562;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=1.45;SOR=0.898;VQSLOD=6.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,91:188:99:2719,0,2662
chr3	10382148	rs154242	G	A	17993.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=224;ExcessHet=3.0103;FS=2.540;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.94;ReadPosRankSum=-2.140e-01;SOR=0.945;VQSLOD=6.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,117:224:99:3149,0,2539
chr3	10382537	rs709640	T	G	2490.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.50;ReadPosRankSum=1.75;SOR=2.332;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:246,0,311
chr3	10387059	rs241509	C	A	8217.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430e-01;DB;DP=229;ExcessHet=1.5490;FS=3.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-2.020e-01;SOR=0.918;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,110:229:99:2632,0,2930
chr3	10396988	rs3774180	T	C	732.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.83;ReadPosRankSum=-7.980e-01;SOR=2.400;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:396,0,166
chr3	10400145	rs775018	A	G	935.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:19:237,0,19
chr3	10400231	rs3774178	T	C	2092.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=32;ExcessHet=1.5490;FS=7.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=1.21;SOR=4.407;VQSLOD=12.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,21:32:99:775,0,350
chr3	10400643	rs28113	G	A	3873.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;DB;DP=65;ExcessHet=1.5490;FS=6.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=0.665;SOR=0.303;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,35:65:99:1067,0,928
chr3	10401856	rs2278554	G	T	1020.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.314e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=0.849;SOR=0.627;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:263,0,303
chr3	10413341	rs55970333	C	G	725.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=1.13;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:184,0,169
chr3	10413921	rs56252495	G	T	1240.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=2.32;SOR=0.625;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,26:49:99:700,0,579
chr3	10419856	rs56113011	C	G	449.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.85;DB;DP=20;ExcessHet=3.9794;FS=5.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-3.090e-01;SOR=2.368;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:285,0,385
chr3	10420087	rs751122	T	C	3296.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=129;ExcessHet=3.9794;FS=0.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=1.88;SOR=0.735;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,72:129:99:1752,0,1143
chr3	10420301	rs56275389	G	A	338.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-1.000e-01;SOR=1.061;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:65:178,0,65
chr3	10420338	rs2075312	T	G	280.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.842;SOR=1.179;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:111,0,64
chr3	10420875	rs4684686	G	A	1533.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=30;ExcessHet=3.9794;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=-1.100e-01;SOR=1.072;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,10:30:99:275,0,536
chr3	10421107	rs7616000	A	G	1430.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=44;ExcessHet=3.9794;FS=2.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=0.203;SOR=0.392;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,26:44:99:822,0,460
chr3	10427190	rs725027	C	T	1675.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=-1.480e+00;SOR=0.819;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:435,0,287
chr3	10442779	rs26797	C	T	1426.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.896e+00;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=-3.420e-01;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,50:84:99:1435,0,932
chr3	10442912	rs2289275	T	A	263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=1.47;SOR=0.446;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:99,0,175
chr3	10452231	rs34907	G	A	801.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.820e-01;DB;DP=23;ExcessHet=1.5490;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=-1.860e-01;SOR=0.446;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:206,0,352
chr3	10967739	rs2272395	T	C	8987.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.259e+00;DB;DP=130;ExcessHet=3.0103;FS=1.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=-9.760e-01;SOR=0.556;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3959,390,0
chr3	10975994	rs4434127	G	C	816.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.66;ReadPosRankSum=-1.006e+00;SOR=1.688;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:148,0,148
chr3	10976876	rs2245532	A	G	10001.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.119;DB;DP=72;ExcessHet=3.0103;FS=6.659;MQ=59.99;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=-1.130e-01;SOR=2.608;VQSLOD=0.958;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2592,216,0
chr3	11059847	rs2928078	G	A	481.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.12;ReadPosRankSum=0.842;SOR=2.584;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:102,0,70
chr3	11059996	rs1728803	A	G	778.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=1.09;SOR=0.914;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:61:171,0,61
chr3	11075014	rs2675163	C	T	1270.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.77;ReadPosRankSum=-1.150e+00;SOR=0.770;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:491,48,0
chr3	11075503	rs2246543	T	C	2500.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.80;ReadPosRankSum=1.04;SOR=0.824;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:832,66,0
chr3	11300707	rs901865	T	C	6452.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=71;ExcessHet=3.0103;FS=3.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.58;ReadPosRankSum=0.689;SOR=0.363;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2478,213,0
chr3	11339960	rs2594994	T	A	574.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.80;ReadPosRankSum=0.674;SOR=3.383;VQSLOD=18.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:359,27,0
chr3	11381910	rs2594979	T	G	155.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.52;SOR=3.258;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr3	11400249	rs2606736	C	T	987.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.52;SOR=3.611;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:383,30,0
chr3	11518755	rs4684782	T	C	1699.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=4.047;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:886,78,0
chr3	11552027	rs2447607	C	T	202.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=3.611;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr3	11606136	.	A	ATCCCTCACCACCTCCCTCCCTCACCACCTCCCTCCCTCACCACCGCCC	179.87	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=56.97;QD=28.69;SOR=2.833;VQSLOD=4.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:11:196,11,0
chr3	11643465	rs2276749	T	C	6803.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=1.802;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1768,165,0
chr3	11667602	rs2574712	G	A	91.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.728;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=2.64;SOR=0.836;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:100,0,236
chr3	11667714	rs3856802	C	T	1284.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=-6.640e-01;SOR=0.790;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:213,0,244
chr3	11684682	rs2290307	C	T	139.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-3.660e-01;SOR=0.527;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:57:148,0,57
chr3	11685143	rs34152653	T	TA	889.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DB;DP=24;ExcessHet=3.9794;FS=2.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-4.480e-01;SOR=1.136;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,9:24:99:147,0,321
chr3	11712926	rs185071805	G	A	331.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.459e+00;DB;DP=25;ExcessHet=3.0103;FS=6.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.736;SOR=0.066;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:340,0,471
chr3	11734644	.	CA	C	61.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e-01;DP=23;ExcessHet=3.9794;FS=2.913;MQ=60.00;MQRankSum=0.00;QD=1.30;ReadPosRankSum=0.320;SOR=0.324;VQSLOD=5.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,3:23:11:11,0,443
chr3	11744544	rs11411195	G	GA	1424.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.380;DB;DP=16;ExcessHet=3.9794;FS=4.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=0.468;SOR=1.705;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:231,0,170
chr3	11744584	rs6781438	C	T	753.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=-5.490e-01;SOR=0.743;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:61:232,0,61
chr3	11831953	rs9267	C	T	407.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=28;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-2.300e-01;SOR=1.585;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:416,0,351
chr3	11880760	rs7641243	T	C	410.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230e-01;DB;DP=47;ExcessHet=3.0103;FS=1.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=0.547;SOR=0.456;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,18:47:99:419,0,815
chr3	11886650	rs56992230	G	C	662.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.79;ReadPosRankSum=1.19;SOR=2.030;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:81:264,0,81
chr3	11887991	rs408600	C	G	11758.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=265;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.263;SOR=0.716;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:131,134:265:99:3570,0,3291
chr3	11888259	rs420599	C	G	2272.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.765e+00;DB;DP=50;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.044;SOR=0.818;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,18:50:99:597,0,1234
chr3	11912622	rs450931	G	A	521.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=49.86;MQRankSum=-2.592e+00;NEGATIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=-4.340e-01;SOR=0.314;VQSLOD=-2.919e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,12:15:86:415,0,86
chr3	11912635	rs6772434	C	T	2038.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=22;ExcessHet=1.5490;FS=4.239;MQ=56.69;MQRankSum=3.74;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.43;ReadPosRankSum=-1.982e+00;SOR=2.730;VQSLOD=-8.926e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:249,0,405
chr3	11912681	rs28417897	A	T	905.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860e+00;DB;DP=46;ExcessHet=3.9794;FS=4.295;MQ=52.46;MQRankSum=-3.181e+00;NEGATIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=1.61;SOR=0.368;VQSLOD=-2.582e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,26:46:99:634,0,517
chr3	11912797	rs62246062	C	T	4818.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DB;DP=83;ExcessHet=1.5490;FS=0.582;MQ=42.44;MQRankSum=-3.904e+00;QD=22.41;ReadPosRankSum=0.351;SOR=0.635;VQSLOD=-4.184e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,30:83:99:656,0,1259
chr3	11912965	rs2287437	A	C	271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305e+00;DB;DP=9;ExcessHet=3.9794;FS=2.764;MQ=50.61;MQRankSum=1.49;NEGATIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.596;SOR=0.180;VQSLOD=-2.707e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:11912965_A_C:243,0,163:11912965
chr3	11912974	rs2287436	G	A	274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.710e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=51.10;MQRankSum=1.35;NEGATIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=1.19;SOR=0.250;VQSLOD=-2.994e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:99:0|1:11912965_A_C:243,0,163:11912965
chr3	11924455	rs116630942	C	T	44.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=39.37;MQRankSum=-9.670e-01;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=-3.964e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:52,0,34
chr3	11924613	rs369394286	AG	A	1034.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=39.54;POSITIVE_TRAIN_SITE;QD=35.20;SOR=3.258;VQSLOD=5.43;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr3	11925136	rs423051	T	G	974.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.99;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=50.49;MQRankSum=-4.294e+00;NEGATIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=1.70;SOR=0.770;VQSLOD=-4.140e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:268,21,0
chr3	11925254	rs2454146	T	C	1622.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.650e-01;DB;DP=9;ExcessHet=3.0103;FS=14.641;MQ=47.92;MQRankSum=-4.138e+00;POSITIVE_TRAIN_SITE;QD=26.60;ReadPosRankSum=0.493;SOR=0.481;VQSLOD=-2.372e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:335,27,0
chr3	11925365	rs3927162	T	A	1469.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=53.47;POSITIVE_TRAIN_SITE;QD=27.72;SOR=1.287;VQSLOD=1.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1486,158,0
chr3	11925383	rs3864016	A	G	1668.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=0.4576;FS=0.000;MQ=52.57;POSITIVE_TRAIN_SITE;QD=27.35;SOR=1.197;VQSLOD=1.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1685,183,0
chr3	11925610	rs421090	C	T	384.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=39.64;POSITIVE_TRAIN_SITE;QD=34.92;SOR=3.442;VQSLOD=-4.581e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:401,33,0
chr3	11926269	rs11713259	G	A	287.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=1.402;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:304,27,0
chr3	11926334	rs201353047	GTGTATGTGGAGTAATATCTCCCTA	G	953.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=59.78;QD=30.72;SOR=1.931;VQSLOD=3.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:970,66,0
chr3	11926423	rs2055283	A	G	3119.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.50;DB;DP=37;ExcessHet=3.9794;FS=0.626;MQ=59.07;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=1.71;SOR=0.757;VQSLOD=1.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1217,111,0
chr3	11926467	rs2055282	A	G	2371.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=56.77;MQRankSum=-5.304e+00;QD=20.99;ReadPosRankSum=-8.520e-01;SOR=0.670;VQSLOD=-3.126e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1413,144,0
chr3	11926508	rs391434	A	G	3863.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.360e-01;DB;DP=48;ExcessHet=3.9794;FS=3.661;MQ=56.99;MQRankSum=-2.481e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.55;ReadPosRankSum=2.13;SOR=0.456;VQSLOD=-8.065e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1393,144,0
chr3	11926604	rs433987	A	G	2155.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=26;ExcessHet=3.9794;FS=1.885;MQ=56.31;MQRankSum=-3.202e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=0.341;SOR=0.478;VQSLOD=-1.375e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:940,78,0
chr3	12045767	rs2623873	G	T	257.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=59.48;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.41;ReadPosRankSum=0.524;SOR=0.399;VQSLOD=1.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:58:151,0,58
chr3	12045850	rs62240360	G	C	1677.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.48;SOR=7.168;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:27:1|1:12045850_G_C:398,27,0:12045850
chr3	12045864	rs80251534	A	T	2107.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.29;SOR=7.824;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:12045850_G_C:672,48,0:12045850
chr3	12045891	rs79624759	T	C	4216.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=6.184;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:87:1|1:12045891_T_C:1305,87,0:12045891
chr3	12045899	rs77368781	C	T	5006.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.96;SOR=5.097;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:12045891_T_C:1531,105,0:12045891
chr3	12045923	rs73135622	A	C	7246.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.858;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.83;ReadPosRankSum=1.43;SOR=2.153;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,57:58:99:1|1:12045891_T_C:2315,137,0:12045891
chr3	12045986	rs67270413	G	A	12228.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=59.97;QD=27.42;SOR=0.953;VQSLOD=1.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:3990,421,0
chr3	12046013	rs72624441	A	C	14716.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.74;ReadPosRankSum=0.112;SOR=0.234;VQSLOD=6.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:4733,488,0
chr3	12046076	rs2618395	T	C	14899.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.85;SOR=1.590;VQSLOD=17.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5089,498,0
chr3	12046124	rs76272937	A	G	12237.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.83;SOR=2.070;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,98:98:99:1|1:12046124_A_G:4381,295,0:12046124
chr3	12046125	rs74800608	G	C	12237.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.28;SOR=2.108;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,97:97:99:1|1:12046124_A_G:4381,295,0:12046124
chr3	12046131	rs74213196	A	C	11505.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.40;SOR=2.021;VQSLOD=18.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,85:85:99:1|1:12046124_A_G:4095,274,0:12046124
chr3	12046148	rs2623874	C	T	7636.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.65;SOR=2.017;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,64:64:99:1|1:12046124_A_G:2880,193,0:12046124
chr3	12046168	rs2623875	A	C	4261.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.28;SOR=3.467;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:12046124_A_G:1755,117,0:12046124
chr3	12046196	rs2600233	A	C	1052.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.39;SOR=3.611;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:408,33,0
chr3	12046362	rs2923856	G	C	3496.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.82;SOR=1.379;VQSLOD=17.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:12046362_G_C:1800,120,0:12046362
chr3	12046364	rs2923857	G	C	3570.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.53;SOR=1.409;VQSLOD=19.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:12046362_G_C:1849,126,0:12046362
chr3	12046372	rs2623877	G	C	3549.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.73;SOR=1.193;VQSLOD=17.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:12046362_G_C:1849,126,0:12046362
chr3	12046445	rs2600235	T	G	3027.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=1.263;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:12046445_T_G:1647,111,0:12046445
chr3	12046446	rs2623879	T	C	3027.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=1.230;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:12046445_T_G:1647,111,0:12046445
chr3	12046530	rs2623880	A	G	235.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-02;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.14;ReadPosRankSum=0.204;SOR=0.223;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:124,0,216
chr3	12046568	rs2618392	C	G	282.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.88;SOR=1.609;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr3	12192525	rs182545	G	C	320.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=1.28;SOR=2.303;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	12195622	rs308952	A	G	1211.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.56;ReadPosRankSum=0.00;SOR=3.003;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:379,30,0
chr3	12197997	rs308953	C	T	532.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=3.912;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr3	12198611	rs308954	C	A	715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=8;ExcessHet=3.9794;FS=3.410;MQ=60.00;MQRankSum=0.00;QD=19.86;ReadPosRankSum=0.047;SOR=0.223;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,184
chr3	12202866	rs308950	C	G	2727.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.22;DB;DP=28;ExcessHet=3.0103;FS=2.349;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=1.29;SOR=1.170;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:981,84,0
chr3	12208652	rs795008	A	G	7540.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.41;SOR=1.998;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2499,213,0
chr3	12208671	rs795009	G	T	6698.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.160e-01;DB;DP=93;ExcessHet=3.0103;FS=0.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-5.580e-01;SOR=0.787;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3010,279,0
chr3	12208995	rs795010	T	A	2041.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.912e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=-4.380e-01;SOR=0.892;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:771,60,0
chr3	12211046	rs795011	G	T	3669.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.082e+00;DB;DP=27;ExcessHet=3.0103;FS=5.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.36;ReadPosRankSum=0.062;SOR=0.222;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1001,81,0
chr3	12229015	rs794999	A	G	19026.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.79;DB;DP=253;ExcessHet=3.0103;FS=1.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.438;SOR=0.657;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,253:253:99:7805,758,0
chr3	12229237	rs35294573	TG	T	2899.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.529;DB;DP=23;ExcessHet=3.0103;FS=3.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-1.042e+00;SOR=2.459;VQSLOD=6.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:809,69,0
chr3	12229268	rs35996249	TTG	T	851.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.068;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=-8.400e-01;SOR=1.609;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:319,27,0
chr3	12232074	rs310764	A	G	9731.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=0.749;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3243,334,0
chr3	12232208	rs310765	T	G	3810.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=3.464;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:843,63,0
chr3	12317654	rs34094208	GGAAA	G	771.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=17;ExcessHet=3.9794;FS=4.500;MQ=60.00;MQRankSum=0.00;QD=24.88;ReadPosRankSum=0.354;SOR=2.746;VQSLOD=4.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:390,0,336
chr3	12317739	rs151229409	GAAGGGAGGAAGGA	G	1268.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DB;DP=44;ExcessHet=3.9794;FS=1.070;MQ=60.00;MQRankSum=0.00;QD=15.85;ReadPosRankSum=-8.130e-01;SOR=0.851;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,16:44:99:552,0,1206
chr3	12447814	rs1797895	C	G	1117.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.62;SOR=6.666;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr3	12510679	rs34834857	CT	C	480.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=0.674;SOR=3.611;VQSLOD=4.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:5:97,0,5
chr3	12557945	rs68107346	ATGTG	A	942.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.080e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.22;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=1.01;SOR=0.826;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:37:508,37,0
chr3	12570572	rs299632	C	T	1286.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030e-01;DB;DP=30;ExcessHet=6.9897;FS=1.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.20;ReadPosRankSum=-4.880e-01;SOR=0.889;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:368,0,539
chr3	12571420	rs35445022	GT	G	1006.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=58;ExcessHet=3.9794;FS=1.471;MQ=60.00;MQRankSum=0.00;QD=9.15;ReadPosRankSum=1.55;SOR=0.581;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,24:58:99:483,0,647
chr3	12573998	rs167257	T	C	837.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e-01;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-5.650e-01;SOR=0.829;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:318,0,192
chr3	12582101	rs1699344	G	A	466.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=9;ExcessHet=6.9897;FS=3.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-3.280e-01;SOR=2.428;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:103,0,219
chr3	12582138	rs959088	G	C	390.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=0.00;SOR=0.818;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:81,0,33
chr3	12584899	rs2454433	A	C	155.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=4.7712;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.524;SOR=0.105;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:124,0,27
chr3	12598839	rs2255655	C	G	2633.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.400e-02;DB;DP=44;ExcessHet=3.9794;FS=11.466;MQ=60.00;MQRankSum=0.00;QD=21.41;ReadPosRankSum=1.70;SOR=2.356;VQSLOD=13.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:658,0,859
chr3	12598963	rs2255648	A	G	427.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.53;ReadPosRankSum=-6.520e-01;SOR=2.303;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:144,0,108
chr3	12610732	rs1986068	T	C	336.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.19;SOR=4.407;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr3	12613866	rs2648307	T	C	6669.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-02;DB;DP=124;ExcessHet=3.9794;FS=0.438;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.035;SOR=0.731;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,65:124:99:1619,0,1567
chr3	12614107	rs2648308	T	C	570.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=0.936;SOR=0.582;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:51:51,0,106
chr3	12616533	rs3773341	G	A	1079.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432e+00;DB;DP=111;ExcessHet=3.0103;FS=2.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=-1.230e+00;SOR=0.486;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,49:111:99:1088,0,1608
chr3	12617996	rs1542848	G	A	3738.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.143e+00;DB;DP=77;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-1.201e+00;SOR=0.686;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,35:77:99:925,0,1227
chr3	12618269	rs2442805	C	T	1813.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=74;ExcessHet=3.9794;FS=2.168;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-4.710e-01;SOR=0.896;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,29:74:99:768,0,1204
chr3	12623107	rs142761723	A	G	265.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=-1.534e+00;SOR=2.833;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:16:274,0,16
chr3	12629336	.	C	CTT	48.96	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.48;SOR=0.693;VQSLOD=3.99;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:61,6,0
chr3	12632652	rs2596831	G	C	1400.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=20;ExcessHet=6.9897;FS=3.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.883;SOR=2.351;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:423,0,321
chr3	12633424	.	A	AT	217.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DP=14;ExcessHet=6.9897;FS=4.362;MQ=60.00;MQRankSum=0.00;QD=3.39;ReadPosRankSum=0.770;SOR=1.819;VQSLOD=4.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:98:98,0,139
chr3	12633552	rs2442808	T	C	384.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.92;ReadPosRankSum=-3.190e-01;SOR=1.981;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:82,0,28
chr3	12641518	rs2246390	A	G	1390.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=27;ExcessHet=3.9794;FS=14.384;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=0.024;SOR=2.570;VQSLOD=12.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:394,0,356
chr3	12645007	rs2596828	C	T	865.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.220e-01;DB;DP=34;ExcessHet=3.9794;FS=0.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-3.990e-01;SOR=0.573;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:329,0,517
chr3	12646000	rs2648367	T	C	249.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=-5.240e-01;SOR=0.836;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:114,0,64
chr3	12647547	rs3214791	T	TG	327.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.00;ReadPosRankSum=-6.740e-01;SOR=0.293;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:25:146,0,25
chr3	12650482	rs2454440	T	A	4062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.99;SOR=1.609;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1115,101,0
chr3	12660291	rs3729926	C	T	2282.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=1.18;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:366,0,619
chr3	12776428	rs3732687	A	C	2127.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=80;ExcessHet=3.9794;FS=3.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.224;SOR=0.980;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,31:80:99:758,0,1268
chr3	12779409	rs2271209	A	G	2967.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=28;ExcessHet=3.9794;FS=4.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=-7.050e-01;SOR=0.326;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,21:28:99:641,0,134
chr3	12791009	rs2055740	G	A	337.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=4.615;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:182,15,0
chr3	12791172	rs937915	T	C	2415.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=49;ExcessHet=6.9897;FS=0.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-3.920e-01;SOR=0.809;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,27:49:99:813,0,553
chr3	12810629	rs11279087	CCGGGACTGG	C	2651.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=58;ExcessHet=6.9897;FS=1.174;MQ=60.00;MQRankSum=0.00;QD=13.81;ReadPosRankSum=-5.990e-01;SOR=0.819;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,20:58:99:726,0,3944
chr3	12810755	rs7641959	G	C	2352.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.710e-01;DB;DP=44;ExcessHet=3.9794;FS=1.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.741;SOR=0.836;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:381,0,583
chr3	12810783	rs61606491	C	T	1273.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=33;ExcessHet=6.9897;FS=4.994;MQ=60.00;MQRankSum=0.00;QD=10.80;ReadPosRankSum=0.842;SOR=1.254;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:361,0,419
chr3	12838293	rs12631514	G	C	14239.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=245;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=0.349;SOR=0.670;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,129:245:99:3353,0,2919
chr3	12845158	rs9835677	G	A	3079.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=0.395;SOR=0.660;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1841,179,0
chr3	12848822	rs11718898	T	C	8070.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.430e-01;DB;DP=105;ExcessHet=3.0103;FS=0.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=-7.590e-01;SOR=0.606;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,104:105:99:3320,274,0
chr3	12849011	rs34529773	TA	T	3346.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.820e-01;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=0.602;SOR=0.841;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1305,101,0
chr3	12849031	rs59302336	C	CA	1313.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.860e-01;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-3.760e-01;SOR=0.658;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,29:36:91:694,0,91
chr3	12856856	rs2305398	A	G	9644.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=155;ExcessHet=3.9794;FS=1.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-1.540e-01;SOR=0.895;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,75:155:99:1892,0,2150
chr3	12857493	rs2305397	C	T	2882.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DB;DP=99;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=-2.530e-01;SOR=0.668;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,39:99:99:887,0,1430
chr3	12857823	rs731646	C	T	2856.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=84;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.484;SOR=0.711;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1089,0,1014
chr3	12858028	rs3732675	T	C	8951.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DB;DP=123;ExcessHet=3.9794;FS=3.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=0.815;SOR=0.865;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,67:123:99:1820,0,1578
chr3	12859004	rs3732678	A	C	5489.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=92;ExcessHet=3.9794;FS=2.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=-1.160e-01;SOR=0.552;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,36:92:99:896,0,1516
chr3	12875443	rs12629133	G	A	2998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DB;DP=109;ExcessHet=3.9794;FS=1.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.228;SOR=0.815;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,56:109:99:1481,0,1274
chr3	12913522	rs526343	A	C	1486.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710e+00;DB;DP=21;ExcessHet=3.9794;FS=3.789;MQ=59.43;MQRankSum=0.791;NEGATIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=2.46;SOR=1.765;VQSLOD=-1.588e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,13:21:99:0|1:12913522_A_C:512,0,373:12913522
chr3	12913523	rs78250122	A	G	1486.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.96;DB;DP=20;ExcessHet=3.9794;FS=3.758;MQ=59.42;MQRankSum=0.791;NEGATIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=2.89;SOR=1.714;VQSLOD=-1.766e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,12:20:99:0|1:12913522_A_C:512,0,373:12913522
chr3	12913536	rs187250	T	C	1141.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.60;MQRankSum=0.00;QD=24.82;ReadPosRankSum=2.02;SOR=1.051;VQSLOD=2.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:403,0,184
chr3	12913550	rs201144104	A	G	30.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=17;ExcessHet=3.0103;FS=11.335;MQ=58.87;MQRankSum=-3.859e+00;NEGATIVE_TRAIN_SITE;QD=1.78;ReadPosRankSum=2.24;SOR=2.208;VQSLOD=-4.070e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,2:17:39:39,0,550
chr3	12941094	rs3773308	G	A	1922.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.805e+00;DB;DP=86;ExcessHet=3.9794;FS=0.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-1.211e+00;SOR=0.603;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1043,0,1349
chr3	12942850	rs56387830	GC	G	6603.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=81;ExcessHet=3.0103;FS=14.557;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.35;ReadPosRankSum=1.13;SOR=2.617;VQSLOD=0.766;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2977,244,0
chr3	12943341	rs714993	A	G	411.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.9794;FS=2.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=0.189;SOR=1.765;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:88:88,0,105
chr3	12944158	rs63063761	CA	C	572.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DB;DP=28;ExcessHet=3.9794;FS=1.040;MQ=58.91;MQRankSum=-6.070e-01;POSITIVE_TRAIN_SITE;QD=7.74;ReadPosRankSum=-4.580e-01;SOR=0.999;VQSLOD=1.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,9:28:99:108,0,381
chr3	12944170	.	CA	C	181.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.040;DP=30;ExcessHet=3.9794;FS=0.906;MQ=58.89;MQRankSum=0.945;QD=4.32;ReadPosRankSum=0.941;SOR=0.896;VQSLOD=0.359;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,8:30:99:105,0,273
chr3	12954868	rs2600322	A	G	4405.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060e-01;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=-1.076e+00;SOR=0.693;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,32:58:99:884,0,655
chr3	12956531	rs2255964	G	A	1942.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=48;ExcessHet=6.9897;FS=3.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-9.620e-01;SOR=1.121;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,28:48:99:721,0,506
chr3	12976863	rs2600206	T	C	2172.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.21;DB;DP=46;ExcessHet=6.9897;FS=0.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-9.100e-02;SOR=0.931;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:725,0,671
chr3	13008814	rs72624444	G	C	949.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.480e-01;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-1.469e+00;SOR=0.706;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,38:70:99:958,0,799
chr3	13359433	rs354477	G	A	2159.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.99;DB;DP=34;ExcessHet=3.9794;FS=8.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=0.351;SOR=3.293;VQSLOD=14.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1432,102,0
chr3	13360513	rs184930	C	T	1273.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.993;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=0.231;SOR=0.481;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:850,63,0
chr3	13361040	rs35109117	A	AGAG	3841.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.47;DB;DP=34;ExcessHet=3.0103;FS=6.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=-1.390e-01;SOR=1.504;VQSLOD=6.39;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1568,108,0
chr3	13361238	rs2276748	C	T	7771.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=91;ExcessHet=3.0103;FS=7.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=0.636;SOR=0.354;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3019,273,0
chr3	13361287	rs354478	C	T	7946.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.050e+00;DB;DP=101;ExcessHet=3.0103;FS=4.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=-7.310e-01;SOR=0.460;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3227,303,0
chr3	13361391	rs354479	A	G	8789.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=1.183;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3208,312,0
chr3	13364876	rs514084	G	T	6344.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.192;DB;DP=125;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.857;SOR=0.685;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3528,371,0
chr3	13367406	rs665064	C	T	6103.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.51;DB;DP=106;ExcessHet=3.9794;FS=0.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=1.03;SOR=0.637;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3350,318,0
chr3	13376795	rs13098069	G	A	529.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=0.249;SOR=0.922;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:284,0,183
chr3	13383100	rs75100230	G	A	852.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=0.744;SOR=0.755;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,31:48:99:861,0,360
chr3	13438830	rs13066607	A	G	1888.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=33;ExcessHet=6.9897;FS=17.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.516;SOR=2.181;VQSLOD=11.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,11:33:99:305,0,621
chr3	13522973	rs2675232	C	T	1150.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443e+00;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.332;SOR=0.656;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,44:76:99:1159,0,837
chr3	13523010	rs2655218	T	C	5346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=1.583;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1447,143,0
chr3	13523057	rs3732670	C	T	761.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256e+00;DB;DP=25;ExcessHet=3.9794;FS=1.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.624;SOR=0.435;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:400,0,373
chr3	13538012	rs2290193	A	C	401.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=1.83;SOR=0.616;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:153,0,65
chr3	13538054	rs2290194	C	T	171.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.395e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.01;ReadPosRankSum=0.308;SOR=0.770;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:180,0,465
chr3	13538079	rs2290195	C	G	278.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.240;SOR=0.576;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:287,0,601
chr3	13538363	rs149010803	T	TG	499.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.960e-01;DB;DP=42;ExcessHet=3.0103;FS=9.155;MQ=60.00;MQRankSum=0.00;QD=12.48;ReadPosRankSum=0.416;SOR=1.133;VQSLOD=3.59;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,20:42:99:508,0,480
chr3	13538372	.	A	T	91.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.456e+00;DP=47;ExcessHet=3.0103;FS=37.765;MQ=60.00;MQRankSum=0.00;QD=1.96;ReadPosRankSum=-2.037e+00;SOR=5.281;VQSLOD=-2.086e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,13:47:98:98,0,860
chr3	13539850	rs75944917	C	G	649.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=55;ExcessHet=3.0103;FS=2.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-1.116e+00;SOR=0.366;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,25:55:99:658,0,905
chr3	13574068	rs35913726	AC	A	1393.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=42;ExcessHet=1.5490;FS=1.061;MQ=60.00;MQRankSum=0.00;QD=19.91;ReadPosRankSum=0.176;SOR=0.997;VQSLOD=6.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,22:42:99:559,0,494
chr3	13649339	rs6442403	A	G	436.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.992;SOR=0.518;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:108,0,188
chr3	13649762	rs2276747	G	A	919.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.469;SOR=0.394;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:319,0,473
chr3	13659897	rs4596126	A	C	1331.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.507e+00;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.64;ReadPosRankSum=1.60;SOR=2.124;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:454,0,474
chr3	13660969	rs9857050	G	T	976.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=0.864;SOR=0.495;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:53:236,0,53
chr3	13661515	rs62233001	G	A	57.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,103
chr3	13670508	rs41283996	G	A	7182.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=294;ExcessHet=3.9794;FS=1.104;MQ=59.97;MQRankSum=1.01;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.502;SOR=0.790;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:147,147:294:99:3558,0,3654
chr3	13670962	rs896053	A	G	1250.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.14;SOR=1.688;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:306,21,0
chr3	13677751	rs3816411	T	C	686.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.970e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.21;ReadPosRankSum=0.697;SOR=2.737;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
chr3	13678173	rs2290188	G	T	6768.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=69;ExcessHet=3.0103;FS=5.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=-6.810e-01;SOR=0.302;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2354,205,0
chr3	13679829	rs7820	C	T	2403.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.63;ReadPosRankSum=0.402;SOR=0.957;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:305,0,169
chr3	13679850	rs71773469	TTA	T	653.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.16;ReadPosRankSum=0.616;SOR=1.244;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:28:157,0,28
chr3	13895817	rs3762720	C	G	1918.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.09;ReadPosRankSum=2.65;SOR=1.473;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:269,0,178
chr3	13896140	rs3762719	A	G	2843.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160e-01;DB;DP=237;ExcessHet=3.0103;FS=0.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=1.25;SOR=0.649;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,114:237:99:2852,0,3083
chr3	13896284	rs12639607	C	T	1817.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=125;ExcessHet=3.0103;FS=0.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=1.30;SOR=0.846;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,73:125:99:1826,0,1199
chr3	14105882	rs4684179	C	A	698.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-7.890e-01;SOR=0.892;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:172,0,478
chr3	14105964	rs142895893	T	TAGC	382.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=9;ExcessHet=3.9794;FS=5.180;MQ=60.00;MQRankSum=0.00;QD=20.11;ReadPosRankSum=0.608;SOR=0.092;VQSLOD=5.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,201
chr3	14106310	rs59708448	T	TCCAGCACCAGCAGTC	4224.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.970e-01;DB;DP=86;ExcessHet=6.9897;FS=2.989;MQ=60.00;MQRankSum=0.00;QD=17.75;ReadPosRankSum=0.403;SOR=0.907;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,39:86:99:1525,0,5970
chr3	14106499	rs2607779	G	A	3326.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260e-01;DB;DP=67;ExcessHet=6.9897;FS=2.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=1.17;SOR=0.544;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,35:67:99:835,0,830
chr3	14154231	rs2731316	T	G	979.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=19;ExcessHet=6.9897;FS=4.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-7.900e-01;SOR=1.536;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:376,0,209
chr3	14158220	rs2731313	G	A	672.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.215;SOR=0.569;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,2:12:45:45,0,382
chr3	14165963	rs3733169	C	T	539.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-2.480e-01;SOR=0.551;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:310,0,317
chr3	14172075	rs6798807	C	T	506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=0.355;SOR=0.760;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:206,0,182
chr3	14172827	rs17038942	C	T	99.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:50:107,0,50
chr3	14172974	rs3964375	C	T	850.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.155;SOR=0.660;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,15:40:99:368,0,654
chr3	14173963	rs4685074	G	T	5540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e+00;DB;DP=126;ExcessHet=6.9897;FS=1.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-3.540e-01;SOR=0.789;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,74:126:99:1863,0,1255
chr3	14174146	rs4685075	T	C	3481.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670e-01;DB;DP=79;ExcessHet=6.9897;FS=4.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.315;SOR=0.969;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,32:79:99:853,0,1273
chr3	14174427	rs4685076	A	T	1812.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DB;DP=110;ExcessHet=3.9794;FS=1.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=0.243;SOR=0.735;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,51:110:99:1049,0,1415
chr3	14175262	rs2340917	T	C	6348.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.594e+00;DB;DP=114;ExcessHet=6.9897;FS=0.526;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-1.371e+00;SOR=0.726;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,69:114:99:1776,0,1024
chr3	14176446	rs6766740	G	A	1260.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-01;DB;DP=47;ExcessHet=3.9794;FS=3.008;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.170;SOR=0.381;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:619,0,773
chr3	14177194	rs2607765	T	C	567.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.38;ReadPosRankSum=0.328;SOR=0.446;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr3	14177251	rs3796311	G	A	656.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.61;MQRankSum=1.32;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=1.32;SOR=1.022;VQSLOD=1.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:345,0,198
chr3	14180552	rs2607767	A	G	1719.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.829e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.15;ReadPosRankSum=-1.928e+00;SOR=1.785;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:672,57,0
chr3	14183410	rs1043943	T	C	905.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.847;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.55;ReadPosRankSum=-1.981e+00;SOR=2.753;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:482,33,0
chr3	14187449	rs2228001	G	T	4762.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.521e+00;DB;DP=51;ExcessHet=3.0103;FS=9.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-2.731e+00;SOR=1.565;VQSLOD=18.77;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1752,152,0
chr3	14187699	rs2733532	T	C	2369.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.27;DB;DP=18;ExcessHet=3.0103;FS=1.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.85;ReadPosRankSum=0.598;SOR=1.539;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:14187699_T_C:768,54,0:14187699
chr3	14187710	rs3731175	T	C	849.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=0.832;SOR=0.587;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,7:15:99:0|1:14187699_T_C:263,0,244:14187699
chr3	14188700	rs2733533	C	A	2063.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=53;ExcessHet=3.9794;FS=6.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=1.70;SOR=1.463;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:1029,0,644
chr3	14188762	rs2733534	G	C	3700.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.251;DB;DP=125;ExcessHet=3.9794;FS=4.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=-9.900e-01;SOR=0.951;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,62:125:99:1610,0,1569
chr3	14189340	rs2607749	A	G	1343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-7.370e-01;SOR=0.746;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:716,0,603
chr3	14190237	rs2279017	T	G	16423.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=195;ExcessHet=3.0103;FS=2.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.81;ReadPosRankSum=-9.900e-02;SOR=0.703;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,195:195:99:6298,585,0
chr3	14190268	rs2470353	G	C	4230.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176e+00;DB;DP=162;ExcessHet=3.9794;FS=10.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-4.700e-02;SOR=0.947;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,76:162:99:2002,0,2405
chr3	14193889	rs2227998	C	T	4550.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=191;ExcessHet=3.9794;FS=7.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=1.53;SOR=1.046;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,106:191:99:2617,0,2192
chr3	14194094	rs3731149	T	G	416.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=2.44;SOR=1.609;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:328,0,264
chr3	14197987	rs2958057	A	T	13604.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.94;ReadPosRankSum=0.039;SOR=0.337;VQSLOD=7.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,134:135:99:4058,394,0
chr3	14200473	rs3731127	G	A	245.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=16;ExcessHet=3.0103;FS=2.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=1.14;SOR=2.093;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:254,0,182
chr3	14201352	rs3731125	T	C	249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=2.05;SOR=0.425;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:258,0,366
chr3	14201400	rs3731124	T	G	354.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=1.41;SOR=0.693;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:221,0,175
chr3	14208625	rs3729587	G	C	2645.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770e-01;DB;DP=92;ExcessHet=3.9794;FS=5.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.896;SOR=1.123;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,45:92:99:1236,0,1244
chr3	14211865	rs3731081	C	A	578.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=-4.470e-01;SOR=0.638;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:91:291,0,91
chr3	14220095	rs2607775	C	G	17223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=698;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=1.38;SOR=0.681;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:324,374:698:99:9421,0,7752
chr3	14444243	rs67046817	CT	C	34123.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=1.107;VQSLOD=5.42;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,248:248:99:1|1:14444243_CT_C:11274,759,0:14444243
chr3	14444249	rs66528743	CT	C	33913.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=249;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.85;SOR=1.157;VQSLOD=4.79;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,249:249:99:1|1:14444243_CT_C:11213,753,0:14444243
chr3	14444276	rs66873458	GC	G	24840.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=1.643;VQSLOD=5.92;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,181:181:99:1|1:14444276_GC_G:7941,545,0:14444276
chr3	14444285	rs66774122	GC	G	23844.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=164;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.62;SOR=1.831;VQSLOD=3.34;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,164:164:99:1|1:14444276_GC_G:7492,506,0:14444276
chr3	14444308	rs68047955	CT	C	17552.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=2.584;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,132:132:99:1|1:14444308_CT_C:5762,397,0:14444308
chr3	14444318	rs67637606	CT	C	16770.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=2.833;VQSLOD=4.77;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,116:116:99:1|1:14444308_CT_C:5286,355,0:14444308
chr3	14444326	rs66654032	AT	A	15415.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.00;SOR=3.119;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,106:106:99:1|1:14444308_CT_C:4854,325,0:14444308
chr3	14444329	rs67559364	CT	C	15010.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=3.196;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,104:104:99:1|1:14444308_CT_C:4764,319,0:14444308
chr3	14485484	rs36107877	C	A	6254.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.827;DB;DP=85;ExcessHet=3.0103;FS=0.671;MQ=59.93;MQRankSum=0.00;QD=24.62;ReadPosRankSum=-4.880e-01;SOR=0.641;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,83:85:99:2356,205,0
chr3	14486017	rs138242458	TC	T	383.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=1.04;SOR=1.371;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,69
chr3	14486392	rs3773189	A	G	2952.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.047e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=-1.945e+00;SOR=0.563;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1171,93,0
chr3	14486950	rs142776988	AAAAG	A	560.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=5.283;VQSLOD=6.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:307,21,0
chr3	14488729	.	T	TATCCATCC	165.80	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=28.58;SOR=3.258;VQSLOD=4.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	14488866	rs56833455	A	T	508.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.408;SOR=0.631;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:228,0,362
chr3	14489370	rs2304511	G	T	2264.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.290e-01;DB;DP=103;ExcessHet=3.9794;FS=0.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.05;SOR=0.645;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,48:103:99:1172,0,1423
chr3	14507773	.	TAA	T	191.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DP=6;ExcessHet=3.0103;FS=5.815;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.328;SOR=2.833;VQSLOD=5.13;culprit=FS	GT:AD:DP:GQ:PL	1/1:2,4:6:3:97,3,0
chr3	14509211	rs41284013	A	G	262.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=1.29;SOR=0.941;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:61:61,0,105
chr3	14509865	rs7642354	A	G	515.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870e-01;DB;DP=15;ExcessHet=1.5490;FS=2.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=-6.790e-01;SOR=1.981;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:210,0,192
chr3	14509887	rs55719538	C	CA	555.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=3.383;VQSLOD=6.12;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:300,27,0
chr3	14509909	rs7620520	G	T	496.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.03;SOR=3.767;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr3	14509925	rs55813930	CT	C	390.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.09;SOR=3.056;VQSLOD=6.43;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:14509925_CT_C:225,15,0:14509925
chr3	14509929	rs56051894	T	G	390.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.27;SOR=3.056;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:14509925_CT_C:225,15,0:14509925
chr3	14513456	rs55853390	C	T	361.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.647;SOR=1.483;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:208,0,130
chr3	14519885	rs2241781	A	T	2989.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=40;ExcessHet=3.9794;FS=0.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=-3.680e-01;SOR=0.900;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:632,0,503
chr3	14520164	rs2241780	A	G	3324.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=38;ExcessHet=3.9794;FS=3.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=0.956;SOR=0.427;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,26:38:99:741,0,275
chr3	14520560	rs2304510	G	C	2514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.210e-01;DB;DP=101;ExcessHet=3.9794;FS=2.590;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-8.060e-01;SOR=0.528;VQSLOD=6.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,56:101:99:1391,0,1109
chr3	14523497	rs2304509	C	G	1189.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.04;ReadPosRankSum=1.26;SOR=0.412;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:243,0,270
chr3	14526538	rs1062540	G	A	7209.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.919;DB;DP=146;ExcessHet=0.4576;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=0.873;SOR=0.844;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:3942,434,0
chr3	14526612	rs35363110	AT	A	3905.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e-01;DB;DP=97;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=-1.190e-01;SOR=0.731;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:7,90:97:99:2187,106,0
chr3	14526656	rs1126666	A	G	4206.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=33.13;SOR=2.038;VQSLOD=5.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2325,213,0
chr3	14536202	rs4685167	G	C	169.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:110,0,101
chr3	14537867	rs11918344	A	G	3024.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;DB;DP=52;ExcessHet=3.9794;FS=2.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=1.47;SOR=0.526;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,18:52:99:429,0,934
chr3	14538072	rs11333211	CA	C	8183.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=145;ExcessHet=3.9794;FS=4.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=1.13;SOR=0.692;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:79,66:145:99:2007,0,2506
chr3	14538339	rs7638680	A	C	1851.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=37;ExcessHet=3.0103;FS=2.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=0.913;SOR=1.189;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:424,0,545
chr3	14548208	rs2276756	G	A	1103.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=0.689;SOR=0.855;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:179,0,442
chr3	14548494	rs2276755	A	G	6365.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-02;DB;DP=150;ExcessHet=6.9897;FS=4.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-6.600e-01;SOR=1.020;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,69:150:99:1659,0,2170
chr3	14551444	rs9845816	A	G	3035.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=99;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.412;SOR=0.672;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,43:99:99:962,0,1387
chr3	14552994	rs4685168	A	G	4692.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DB;DP=78;ExcessHet=3.0103;FS=4.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=-9.320e-01;SOR=1.120;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,36:78:99:810,0,967
chr3	14554476	rs4516597	T	C	5945.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=119;ExcessHet=6.9897;FS=2.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=-5.200e-01;SOR=0.501;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,57:119:99:1581,0,1660
chr3	14554608	rs11128703	C	T	1567.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=29;ExcessHet=6.9897;FS=2.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=0.354;SOR=0.435;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,17:29:99:0|1:14554608_C_T:470,0,338:14554608
chr3	14555009	rs4685170	C	T	1457.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=30;ExcessHet=6.9897;FS=1.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-3.330e-01;SOR=0.946;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:463,0,509
chr3	14555216	rs4685171	T	C	5967.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.640e-01;DB;DP=163;ExcessHet=6.9897;FS=0.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-2.340e-01;SOR=0.617;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,88:163:99:2107,0,1782
chr3	14555367	rs4685172	T	C	1310.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=26;ExcessHet=6.9897;FS=1.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-5.670e-01;SOR=0.394;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:403,0,388
chr3	14555409	rs28520469	T	C	762.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.61;ReadPosRankSum=-2.810e-01;SOR=1.179;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,7:12:99:0|1:14555409_T_C:279,0,320:14555409
chr3	14555411	rs28462294	A	C	762.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.56;ReadPosRankSum=0.206;SOR=1.179;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,7:12:99:0|1:14555409_T_C:279,0,320:14555409
chr3	14555739	rs4361268	G	A	1080.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064e+00;DB;DP=47;ExcessHet=6.9897;FS=1.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.06;ReadPosRankSum=0.160;SOR=0.531;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,14:47:99:262,0,1000
chr3	14555758	rs138623401	C	CAGTT	2119.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DB;DP=56;ExcessHet=6.9897;FS=2.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.071;SOR=0.982;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,18:56:99:641,0,2033
chr3	14555811	rs4613440	A	G	2082.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=72;ExcessHet=6.9897;FS=3.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-1.163e+00;SOR=0.917;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,24:72:99:581,0,1151
chr3	14561627	rs5846840	A	AG	6757.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=1.523;VQSLOD=6.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2676,229,0
chr3	14563258	rs4234526	A	G	3512.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=84;ExcessHet=6.9897;FS=0.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.067;SOR=0.625;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,40:84:99:1044,0,1230
chr3	14565017	rs4685173	G	A	1839.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182e+00;DB;DP=39;ExcessHet=6.9897;FS=0.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.544;SOR=0.846;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,24:39:99:654,0,429
chr3	14567666	rs4684230	C	T	644.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.24;ReadPosRankSum=-5.240e-01;SOR=3.056;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,120
chr3	14702848	rs3832217	A	AT	132.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.512e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=-1.140e+00;SOR=0.473;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:141,0,203
chr3	14702982	rs2276754	C	A	5894.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=62;ExcessHet=3.0103;FS=6.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=-1.047e+00;SOR=1.019;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1862,185,0
chr3	14703297	rs9840626	C	T	3615.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=106;ExcessHet=6.9897;FS=0.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-2.980e-01;SOR=0.765;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,44:106:99:1022,0,1501
chr3	14703401	rs55915506	CATAATTACA	C	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.310e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=0.050;SOR=1.371;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,11:17:99:423,0,494
chr3	14706745	rs10662646	T	TATTG	1598.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=20;ExcessHet=3.9794;FS=2.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=0.794;SOR=1.317;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,7:20:99:254,0,525
chr3	14706770	rs73022117	A	G	433.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=22;ExcessHet=3.0103;FS=2.205;MQ=60.00;MQRankSum=0.00;QD=19.69;ReadPosRankSum=-1.710e-01;SOR=1.493;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:442,0,291
chr3	14706848	rs3773487	G	A	220.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.215e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=0.099;SOR=1.179;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,111
chr3	14708918	rs2280383	A	G	4508.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.27;DB;DP=52;ExcessHet=3.0103;FS=5.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.64;ReadPosRankSum=0.403;SOR=0.345;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,50:52:99:1502,107,0
chr3	14712098	rs951829	C	A	1526.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.47;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=0.746;SOR=0.465;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:506,39,0
chr3	14712473	rs1901	G	A	4237.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DB;DP=44;ExcessHet=3.9794;FS=8.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=0.265;SOR=1.300;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,24:44:99:738,0,634
chr3	14724413	rs9821143	G	A	12737.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=328;ExcessHet=6.9897;FS=0.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.676;SOR=0.772;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:180,148:328:99:3652,0,4599
chr3	14724923	rs12487541	G	A	363.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=0.480;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:144,0,178
chr3	14725668	rs12488352	G	A	2118.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.316e+00;DB;DP=23;ExcessHet=3.0103;FS=1.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.43;ReadPosRankSum=-3.170e-01;SOR=0.340;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:810,69,0
chr3	14731259	rs1864901	C	T	2242.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.391;DB;DP=21;ExcessHet=3.0103;FS=4.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.72;ReadPosRankSum=0.744;SOR=0.209;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:779,63,0
chr3	14745857	rs17040196	G	A	5374.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.199e+00;DB;DP=90;ExcessHet=3.9794;FS=5.861;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=2.21;SOR=0.406;VQSLOD=6.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2879,270,0
chr3	14755572	rs6765537	A	G	3249.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.420e+00;DB;DP=49;ExcessHet=3.9794;FS=0.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=-3.340e-01;SOR=0.725;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1445,147,0
chr3	14755617	rs6790129	C	G	2744.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.669e+00;DB;DP=47;ExcessHet=3.9794;FS=1.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=1.86;SOR=0.578;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1384,141,0
chr3	14756578	rs12495591	A	C	938.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.48;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=-2.670e-01;SOR=1.432;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:341,24,0
chr3	14756730	rs9869372	A	G	4878.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.02;DB;DP=64;ExcessHet=3.0103;FS=0.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=0.772;SOR=0.856;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1847,189,0
chr3	14768554	rs17255247	G	A	3792.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-4.000e-03;SOR=0.677;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2096,201,0
chr3	14801550	rs2729697	G	A	1405.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=2.833;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1422,114,0
chr3	14802709	rs62239889	A	G	73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=32.82;SOR=2.303;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	14813825	rs294624	G	C	1704.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=2.36;SOR=0.408;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:874,60,0
chr3	14905513	rs172429	T	G	3748.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.89;ReadPosRankSum=0.458;SOR=0.770;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:451,0,408
chr3	14905841	rs200578390	CT	C	506.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.940e-01;DB;DP=28;ExcessHet=3.0103;FS=2.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=1.12;SOR=0.293;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,16:28:99:515,0,364
chr3	14939198	rs2117775	G	A	7250.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=72;ExcessHet=3.0103;FS=2.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.04;ReadPosRankSum=-1.870e+00;SOR=1.713;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2397,216,0
chr3	14939364	rs2117774	G	A	3162.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=31.03;SOR=3.428;VQSLOD=5.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1157,90,0
chr3	14939479	rs2164356	G	T	12551.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=-6.430e-01;SOR=1.384;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3913,390,0
chr3	14939679	rs2307090	G	A	6485.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=2.646;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2117,210,0
chr3	14942024	rs2307088	T	C	4197.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.704e+00;DB;DP=63;ExcessHet=3.9794;FS=4.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=-9.760e-01;SOR=0.422;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2012,189,0
chr3	14942675	rs293906	G	A	9104.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=4.518;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3516,281,0
chr3	14948886	rs6782420	G	A	1000.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=6.518;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr3	14949268	rs9818644	C	T	7617.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=2.707;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2177,201,0
chr3	14960062	rs293915	G	A	134.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=17.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:143,0,60
chr3	14960170	rs293916	T	C	1779.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e-01;DB;DP=24;ExcessHet=3.9794;FS=1.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=-1.270e-01;SOR=0.431;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:438,0,223
chr3	14962948	rs182398	T	C	8055.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=164;ExcessHet=3.9794;FS=0.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=2.02;SOR=0.788;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,69:164:99:1518,0,2320
chr3	14964821	rs1685637	C	T	2527.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-01;DB;DP=47;ExcessHet=3.9794;FS=3.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=-4.620e-01;SOR=1.018;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:685,0,588
chr3	14965466	rs4685234	C	T	6180.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=97;ExcessHet=3.9794;FS=5.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=-3.200e-02;SOR=0.450;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,48:97:99:1398,0,1303
chr3	14965507	rs4685235	A	G	10109.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.312e+00;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.19;ReadPosRankSum=-1.722e+00;SOR=0.730;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3941,394,0
chr3	14967928	rs1687299	T	G	769.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=1.98;SOR=2.215;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:105,0,140
chr3	15054814	rs7629011	C	T	431.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=0.189;SOR=1.127;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:105,0,100
chr3	15065785	rs41284019	G	A	1006.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017e+00;DB;DP=74;ExcessHet=3.0103;FS=4.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.038;SOR=1.342;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1015,0,1018
chr3	15070374	rs4685237	G	C	1753.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.46;SOR=7.428;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:760,51,0
chr3	15076511	rs596827	G	A	671.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.90;SOR=4.294;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr3	15091248	rs10510437	A	G	108.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.66;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:117,0,68
chr3	15094393	rs11706556	A	G	704.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=-2.040e-01;SOR=0.880;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:214,0,127
chr3	15100801	rs13068576	G	A	306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=-8.580e-01;SOR=0.804;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:315,0,255
chr3	15106911	rs11706426	G	T	195.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=-7.120e-01;SOR=1.609;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:99:0|1:15106911_G_T:204,0,138:15106911
chr3	15106915	rs11706367	C	T	251.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=-1.800e-01;SOR=0.582;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:99:0|1:15106911_G_T:204,0,138:15106911
chr3	15115270	rs3831	G	T	670.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622e+00;DB;DP=28;ExcessHet=3.9794;FS=8.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.235;SOR=2.223;VQSLOD=19.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:352,0,575
chr3	15126086	rs618141	T	C	2502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=3.193;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:801,66,0
chr3	15126102	rs58022057	C	G	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=0.488;SOR=1.136;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:567,0,322
chr3	15127522	rs67424033	CTAG	C	6034.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=61;ExcessHet=3.9794;FS=4.313;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.097;SOR=1.040;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,23:61:99:851,0,1526
chr3	15127598	.	CAA	C	166.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DP=13;ExcessHet=3.9794;FS=4.437;MQ=59.77;MQRankSum=0.00;QD=10.40;ReadPosRankSum=1.88;SOR=2.726;VQSLOD=3.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:13:77:77,0,155
chr3	15127643	rs9867079	G	A	704.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.17;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.88;ReadPosRankSum=0.589;SOR=1.697;VQSLOD=2.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,1:7:19:19,0,230
chr3	15133088	rs9869512	C	T	5930.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=65;ExcessHet=3.9794;FS=0.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=1.55;SOR=0.780;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,36:65:99:919,0,625
chr3	15247796	rs1287464	A	G	523.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.92;SOR=4.047;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:200,18,0
chr3	15259865	rs826426	G	A	1013.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=6.593;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:273,21,0
chr3	15301363	rs2291853	G	A	5262.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293e+00;DB;DP=89;ExcessHet=3.9794;FS=8.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=-8.340e-01;SOR=0.366;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,46:89:99:1225,0,1208
chr3	15311325	rs1287467	A	G	7325.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;DB;DP=106;ExcessHet=3.9794;FS=6.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=1.10;SOR=1.031;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,61:106:99:1523,0,1041
chr3	15311464	rs1287468	G	T	2679.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.94;SOR=2.124;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,35:35:99:1|1:15311464_G_T:1233,105,0:15311464
chr3	15346040	rs826424	T	G	592.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.88;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:254,21,0
chr3	15374050	rs28450659	C	T	398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.564;SOR=0.460;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:162,0,260
chr3	15455717	rs2290537	A	G	3038.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=32;ExcessHet=3.0103;FS=11.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=1.40;SOR=1.929;VQSLOD=16.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1176,96,0
chr3	15456291	rs7652289	C	G	838.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=6.091;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:229,18,0
chr3	15456550	rs148072600	A	AAAAC	5237.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;DB;DP=53;ExcessHet=3.0103;FS=0.899;MQ=60.00;MQRankSum=0.00;QD=31.94;ReadPosRankSum=1.39;SOR=0.880;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2335,158,0
chr3	15492786	rs2278962	T	A	511.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=-1.645e+00;SOR=2.948;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:284,24,0
chr3	15492807	rs2278961	G	A	657.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.60;ReadPosRankSum=-1.368e+00;SOR=2.833;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:326,27,0
chr3	15498261	rs11128745	T	C	3315.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=2.455;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:87:1|1:15498261_T_C:1234,87,0:15498261
chr3	15498272	rs12494919	G	A	2166.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.360e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=0.816;SOR=0.555;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:72:1|1:15498261_T_C:1068,72,0:15498261
chr3	15498334	rs141471889	TTTCTTTTG	T	521.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.399e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=-4.050e-01;SOR=1.609;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr3	15507761	rs3732722	G	A	2905.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=2.414;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:816,72,0
chr3	15508160	rs10676390	T	TCTGTC	1246.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.17;SOR=5.283;VQSLOD=6.36;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,13:13:39:585,39,0
chr3	15509212	rs878946	T	C	2467.64	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.425;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.12;ReadPosRankSum=0.578;SOR=1.788;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,20:21:22:717,22,0
chr3	15509327	rs878945	C	G	7491.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.891e+00;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=1.33;SOR=0.387;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2534,215,0
chr3	15515695	rs2305616	C	T	5496.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.57;SOR=1.344;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1445,126,0
chr3	15515918	rs28632773	C	G	1330.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=2.833;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:399,39,0
chr3	15516481	rs924812	T	C	5421.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=0.992;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1384,138,0
chr3	15516820	rs924811	C	T	905.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.97;SOR=2.833;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:232,18,0
chr3	15516910	rs3816526	T	C	2689.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.62;SOR=1.552;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:791,75,0
chr3	15517025	rs2305615	G	A	4785.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=0.693;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1567,159,0
chr3	15518731	rs2305612	G	C	9274.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=-1.460e-01;SOR=0.482;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3100,306,0
chr3	15518841	rs13095087	G	A	4759.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.28;SOR=2.066;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1419,120,0
chr3	15518889	rs13074638	T	C	3307.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.88;SOR=3.339;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:994,72,0
chr3	15520244	rs909354	C	T	2307.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=2.173;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:901,86,0
chr3	15520639	rs2290538	T	G	1994.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.839;DB;DP=40;ExcessHet=1.5490;FS=0.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=1.09;SOR=0.549;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1417,120,0
chr3	15520677	rs2255897	G	T	4113.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.138;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1131,93,0
chr3	15529304	rs2168428	A	G	199.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.54;SOR=1.609;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	15529405	rs2124491	C	A	1060.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.15;SOR=3.545;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:368,33,0
chr3	15529543	rs1983085	T	C	4791.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.580e-01;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.52;ReadPosRankSum=1.70;SOR=0.431;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1495,141,0
chr3	15614923	rs17485446	T	C	147.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=0.842;SOR=0.941;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:93:156,0,93
chr3	15643043	rs2019160	A	G	17240.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=34.21;SOR=1.073;VQSLOD=5.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:5221,469,0
chr3	15717614	rs17041435	G	A	1775.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.360e-01;DB;DP=62;ExcessHet=0.4576;FS=3.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=-1.369e+00;SOR=0.940;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1792,147,0
chr3	15717693	rs2246960	G	A	927.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=2.226;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:944,87,0
chr3	15717844	rs2470539	C	T	101.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=2.833;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr3	15718652	rs2470540	T	A	882.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.19;SOR=3.352;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:899,69,0
chr3	15736385	rs2455814	A	T	11188.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=95;ExcessHet=3.0103;FS=3.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.40;ReadPosRankSum=0.529;SOR=0.581;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,94:95:99:3012,275,0
chr3	15737610	rs2470547	T	C	2602.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.616e+00;DB;DP=47;ExcessHet=1.5490;FS=0.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=0.818;SOR=0.602;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1581,141,0
chr3	15737689	rs2470548	G	A	4092.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=0.829;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,92:92:99:1|1:15737689_G_A:4109,277,0:15737689
chr3	15737698	rs2470549	T	C	5770.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.635;DB;DP=96;ExcessHet=1.5490;FS=0.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=-6.800e-02;SOR=0.649;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,96:96:99:1|1:15737689_G_A:4231,289,0:15737689
chr3	15749213	rs2455830	C	T	412.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.06;SOR=4.804;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:429,30,0
chr3	15752830	rs2455833	T	C	805.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.72;SOR=2.030;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:822,69,0
chr3	15753641	rs2455834	A	G	1325.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=2.147;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1342,129,0
chr3	15756039	rs200662705	G	GAA	380.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.970e-01;DB;DP=11;ExcessHet=1.5490;FS=3.634;MQ=59.53;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=1.27;SOR=0.210;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,10:11:1:308,1,0
chr3	15756215	rs924754	A	T	815.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.800e-02;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-1.539e+00;SOR=0.569;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:678,66,0
chr3	15807725	rs6789076	T	A	2233.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.58;SOR=0.693;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2250,252,0
chr3	15836723	rs149384714	G	GT	622.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=50;ExcessHet=3.0103;FS=1.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.612;SOR=0.914;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,24:50:99:631,0,699
chr3	15838150	rs144777884	G	GT,GTT	1203.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=22;ExcessHet=3.9794;FS=5.721;MQ=60.00;MQRankSum=0.00;QD=15.24;ReadPosRankSum=1.36;SOR=0.143;VQSLOD=4.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,10,11:22:99:536,240,189,208,0,193
chr3	15900950	.	C	CGCCGCT	3240.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DP=223;ExcessHet=3.0103;FS=1.086;MQ=60.00;MQRankSum=0.00;QD=14.53;ReadPosRankSum=-1.301e+00;SOR=0.784;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:136,87:223:99:0|1:15900950_C_CGCCGCT:3249,0,5401:15900950
chr3	15900973	rs62243667	A	C	3128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=224;ExcessHet=3.0103;FS=3.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-1.171e+00;SOR=0.940;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:137,87:224:99:0|1:15900950_C_CGCCGCT:3137,0,5418:15900950
chr3	15901053	rs71064238	CT	C	8369.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=37.94;SOR=4.877;VQSLOD=2.48;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2909,217,0
chr3	15901087	.	C	CCCG	919.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DP=9;ExcessHet=6.9897;FS=6.016;MQ=60.00;MQRankSum=0.00;QD=18.40;ReadPosRankSum=0.00;SOR=2.019;VQSLOD=4.94;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,7:9:62:282,0,62
chr3	15915154	rs10514667	C	T	2121.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.50;ReadPosRankSum=0.058;SOR=3.575;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:754,54,0
chr3	16217110	rs11715981	C	T	733.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=54;ExcessHet=3.0103;FS=2.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-5.800e-01;SOR=1.179;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:742,0,741
chr3	16241781	rs11128787	C	A	135.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,76
chr3	16242193	rs143956414	C	T	635.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514e+00;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.77;ReadPosRankSum=-1.680e-01;SOR=0.794;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,26:59:99:644,0,939
chr3	16260642	rs6801980	T	C	403.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=0.221;SOR=1.292;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:102,0,105
chr3	16261139	rs13063387	G	A	537.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=19;ExcessHet=3.9794;FS=5.530;MQ=59.76;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=1.47;SOR=2.685;VQSLOD=0.297;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:316,0,326
chr3	16261420	rs2271077	C	T	1457.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;DB;DP=78;ExcessHet=3.0103;FS=0.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=-1.803e+00;SOR=0.925;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,50:78:99:1466,0,697
chr3	16261872	rs1394906	G	A	669.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=0.842;SOR=4.407;VQSLOD=13.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:148,0,25
chr3	16263872	rs2292167	C	A	2278.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.76;DB;DP=25;ExcessHet=3.9794;FS=1.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=-3.000e-02;SOR=1.038;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,18:25:99:618,0,203
chr3	16263920	rs2292168	G	C	3994.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=53;ExcessHet=3.9794;FS=0.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=2.38;SOR=0.829;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,33:53:99:955,0,473
chr3	16264037	rs2292169	T	A	3305.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=132;ExcessHet=3.9794;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.615;SOR=0.973;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,69:132:99:1828,0,1453
chr3	16268974	rs15767	T	A	1900.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;DB;DP=31;ExcessHet=6.9897;FS=2.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-9.900e-02;SOR=0.944;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,15:31:99:0|1:16268974_T_A:581,0,652:16268974
chr3	16268986	rs14576	C	A	1845.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.440e-01;DB;DP=33;ExcessHet=6.9897;FS=1.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=-4.510e-01;SOR=0.846;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,16:33:99:0|1:16268974_T_A:555,0,652:16268974
chr3	16269066	rs14210	T	G	841.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190e-01;DB;DP=26;ExcessHet=3.9794;FS=0.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-7.010e-01;SOR=0.523;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:267,0,385
chr3	16269117	rs1048619	G	T	649.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.704;SOR=0.674;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:174,0,211
chr3	16310857	rs842258	G	A	3503.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=0.449;SOR=0.743;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1094,104,0
chr3	16358584	rs690241	T	C	8429.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.548e+00;DB;DP=98;ExcessHet=3.0103;FS=1.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=-4.310e-01;SOR=0.573;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3076,293,0
chr3	16364617	rs567541	A	G	260.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.62;SOR=2.584;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	16364919	rs690216	A	C	3258.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.205;DB;DP=37;ExcessHet=3.0103;FS=3.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-4.600e-02;SOR=0.819;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1028,111,0
chr3	16368121	rs690145	T	C	1604.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=15;ExcessHet=3.0103;FS=2.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.10;ReadPosRankSum=-1.140e-01;SOR=1.739;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:595,45,0
chr3	16368575	rs519819	C	T	314.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.45;ReadPosRankSum=1.04;SOR=2.303;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	16399177	rs560032	G	A	656.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.000e-03;DB;DP=8;ExcessHet=3.9794;FS=9.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=-2.810e-01;SOR=2.684;VQSLOD=15.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:324,24,0
chr3	16419025	rs690049	A	T	368.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=-1.036e+00;SOR=2.670;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	16419708	rs690317	G	A	1390.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.940e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.92;ReadPosRankSum=-3.070e-01;SOR=1.287;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:368,27,0
chr3	16457973	rs6776854	C	T	329.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=1.38;SOR=2.670;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,78
chr3	16646745	rs9847342	C	G	19124.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=246;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=0.762;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,246:246:99:7220,738,0
chr3	16647017	rs368908354	G	GC	440.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=5.421;VQSLOD=6.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr3	16679063	rs9835657	C	G	62.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:69,0,34
chr3	16679606	rs1025254	T	C	1022.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.78;SOR=6.439;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:268,18,0
chr3	16926491	rs6442654	G	A	636.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.10;QD=34.07;SOR=3.383;VQSLOD=3.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr3	16926521	rs200478663	CT	C	1336.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=57.19;QD=25.34;SOR=4.479;VQSLOD=4.62;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:16926521_CT_C:450,30,0:16926521
chr3	16926524	.	CT	C	1426.68	PASS	AC=2;AF=1.00;AN=2;DP=10;ExcessHet=3.0103;FS=0.000;MQ=57.28;QD=28.10;SOR=4.548;VQSLOD=4.20;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:33:1|1:16926521_CT_C:495,33,0:16926521
chr3	16926539	.	CT	C	1696.69	PASS	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MQ=57.75;QD=33.10;SOR=4.921;VQSLOD=4.98;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:16926521_CT_C:630,42,0:16926521
chr3	16926544	rs368284573	T	G	1876.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=57.92;QD=28.71;SOR=5.084;VQSLOD=4.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:16926521_CT_C:675,45,0:16926521
chr3	16926548	.	GT	G	2011.69	PASS	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MQ=58.16;QD=29.16;SOR=5.330;VQSLOD=5.39;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:16926521_CT_C:720,48,0:16926521
chr3	16926551	.	CG	C	2056.69	PASS	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MQ=58.20;QD=28.35;SOR=5.376;VQSLOD=5.23;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:16926521_CT_C:720,48,0:16926521
chr3	16926553	.	T	C	2056.69	PASS	AC=2;AF=1.00;AN=2;DP=16;ExcessHet=3.0103;FS=0.000;MQ=58.20;QD=28.79;SOR=5.376;VQSLOD=4.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:16926521_CT_C:720,48,0:16926521
chr3	16926557	rs372006934	T	G	2146.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=58.28;QD=30.60;SOR=5.464;VQSLOD=4.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:16926521_CT_C:720,48,0:16926521
chr3	16926561	.	CT	C	2260.69	PASS	AC=2;AF=1.00;AN=2;DP=15;ExcessHet=3.0103;FS=0.000;MQ=58.35;QD=34.90;SOR=6.399;VQSLOD=5.40;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:48:1|1:16926521_CT_C:719,48,0:16926521
chr3	16926567	rs373958057	T	C	2434.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=58.56;QD=30.79;SOR=4.731;VQSLOD=4.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:16926521_CT_C:719,48,0:16926521
chr3	16926599	rs7626446	T	G	4486.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=59.20;QD=29.66;SOR=2.765;VQSLOD=3.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:16926599_T_G:1710,114,0:16926599
chr3	16926607	rs7626448	T	C	4806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=59.26;QD=24.51;SOR=2.833;VQSLOD=1.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,41:41:99:1|1:16926599_T_G:1836,123,0:16926599
chr3	16926642	rs6442655	A	G	8288.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=59.56;QD=30.86;SOR=1.908;VQSLOD=4.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,66:66:99:1|1:16926642_A_G:3015,202,0:16926642
chr3	16926648	rs6442656	T	G	8975.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=59.67;QD=34.71;SOR=1.697;VQSLOD=2.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,73:73:99:1|1:16926642_A_G:3285,220,0:16926642
chr3	16926666	rs7626542	T	G	10122.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.79;SOR=1.550;VQSLOD=18.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,85:85:99:1|1:16926642_A_G:3675,259,0:16926642
chr3	16974610	rs9880307	C	A	1055.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.72;SOR=0.650;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1064,0,938
chr3	17053499	rs4602367	A	G	4603.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=99;ExcessHet=1.5490;FS=1.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=1.24;SOR=0.845;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,63:99:99:1637,0,886
chr3	17056031	rs7611127	G	A	755.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.50;ReadPosRankSum=0.475;SOR=2.925;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:170,0,151
chr3	17077268	rs17272796	C	T	4466.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-01;DB;DP=86;ExcessHet=1.5490;FS=2.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=1.40;SOR=0.446;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,55:86:99:1276,0,672
chr3	17131082	rs13073832	A	G	69.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:78,0,30
chr3	17131421	rs35185988	C	T	433.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.726e+00;DB;DP=22;ExcessHet=3.0103;FS=2.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=0.410;SOR=0.264;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:442,0,245
chr3	17131501	rs11549706	C	T	93.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-1.890e-01;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:102,0,96
chr3	17202334	rs13078644	A	C	483.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.35;SOR=5.136;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr3	17255493	rs11393639	C	CT	171.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.48;SOR=4.174;VQSLOD=5.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr3	17274801	rs2733501	T	C	300.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=1.93;SOR=1.802;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr3	17275173	rs2060628	G	C	3088.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=77;ExcessHet=1.5490;FS=0.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.16;ReadPosRankSum=1.06;SOR=0.791;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,75:77:99:2192,182,0
chr3	17279462	rs3839094	TA	T	312.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.875e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-2.089e+00;SOR=2.179;VQSLOD=5.96;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chr3	17279526	rs2060629	T	C	1165.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.300e-01;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=1.23;SOR=1.314;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:613,54,0
chr3	17300133	rs2596647	A	C	1520.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=25;ExcessHet=1.5490;FS=2.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.42;ReadPosRankSum=0.555;SOR=1.958;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1024,75,0
chr3	17413531	rs11272495	A	AAAACAAACAAACAAAC	3168.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-8.410e-01;SOR=0.994;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:89:1292,89,0
chr3	17425738	rs921052	A	G	2036.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.98;SOR=3.690;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:29:303,29,0
chr3	17425832	rs17200839	C	T	467.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.40;POSITIVE_TRAIN_SITE;QD=30.53;SOR=4.977;VQSLOD=4.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr3	17469887	rs35081140	ATG	A	171.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.22;SOR=3.611;VQSLOD=6.18;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr3	17470114	rs2121262	C	T	5440.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.100e-01;DB;DP=77;ExcessHet=3.0103;FS=5.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=-1.280e-01;SOR=0.370;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2265,230,0
chr3	18055231	rs61978649	A	C	2511.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=71;ExcessHet=1.5490;FS=3.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=-2.020e-01;SOR=1.150;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,38:71:99:945,0,722
chr3	18057982	rs9310538	A	G	536.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=2.02;SOR=1.501;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:151,0,148
chr3	18058059	rs9310539	A	G	1178.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.430e-01;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=-3.720e-01;SOR=0.836;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:310,0,241
chr3	18392692	rs7627392	A	C	584.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.405;SOR=0.638;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:175,0,141
chr3	18419553	rs9310557	C	T	815.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=1.20;SOR=0.631;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:322,0,633
chr3	18419859	rs10460976	G	A	1493.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256e+00;DB;DP=46;ExcessHet=3.9794;FS=13.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=1.99;SOR=2.012;VQSLOD=13.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:590,0,743
chr3	18427924	rs2229261	G	T	1246.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=51;ExcessHet=3.9794;FS=3.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.037;SOR=1.160;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,28:51:99:748,0,541
chr3	19356139	rs34768061	G	A	638.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.305e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=1.61;SOR=1.112;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:369,0,214
chr3	19556990	.	ATT	A,AT	701.42	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.060;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,10:13:42:337,237,252,79,0,42
chr3	19924372	rs58853219	A	AC	926.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.268e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.90;ReadPosRankSum=2.72;SOR=1.432;VQSLOD=6.17;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:743,57,0
chr3	19925807	rs9882578	A	G	490.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.12;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=-4.410e-01;SOR=1.085;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:256,21,0
chr3	19930003	rs4858714	G	A	1654.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=26;ExcessHet=1.5490;FS=1.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=1.38;SOR=0.932;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:859,78,0
chr3	19930118	.	T	C	280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730e-01;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.04;ReadPosRankSum=-3.200e-01;SOR=0.919;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:289,0,486
chr3	19940877	rs2931385	A	G	1227.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=-1.144e+00;SOR=0.922;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:721,60,0
chr3	19941074	rs2931386	A	G	2816.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.229e+00;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=-6.520e-01;SOR=0.740;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1891,183,0
chr3	19941237	rs2931387	A	G	105.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.29;SOR=2.833;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	19946992	rs2931394	G	A	963.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.362e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=0.447;SOR=4.255;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:330,24,0
chr3	19947105	rs66526230	A	C	1188.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=59.67;POSITIVE_TRAIN_SITE;QD=31.27;SOR=1.329;VQSLOD=4.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1205,114,0
chr3	19947296	rs2929377	T	C	465.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=2.985;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:482,42,0
chr3	19956995	rs62279138	G	A	185.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=3.611;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr3	19959756	rs2929366	G	A	6619.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.69;SOR=0.796;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2550,252,0
chr3	19961330	rs2931403	C	T	4210.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=1.82;SOR=0.713;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1384,137,0
chr3	19974700	rs2929350	T	C	1942.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.91;SOR=2.712;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:651,54,0
chr3	19975139	rs17180771	C	T	3464.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=0.892;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3481,323,0
chr3	19975582	rs2929349	A	G	933.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.340e+00;DB;DP=15;ExcessHet=1.5490;FS=3.226;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.18;ReadPosRankSum=-4.530e-01;SOR=2.165;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:626,45,0
chr3	19977483	rs61046882	AGAGT	A	281.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.28;ReadPosRankSum=-1.834e+00;SOR=2.093;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	19977829	rs63636860	G	GAA	139.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.80;SOR=3.611;VQSLOD=6.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
chr3	19992432	rs6773437	G	T	3059.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=52;ExcessHet=6.9897;FS=2.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=-2.630e-01;SOR=0.986;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,35:52:99:1046,0,356
chr3	20011871	rs17796230	G	A	263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=-1.506e+00;SOR=0.498;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:272,0,495
chr3	20017489	rs4858122	G	C	1033.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.230e-01;DB;DP=25;ExcessHet=6.9897;FS=1.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=0.947;SOR=0.963;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,16:25:99:0|1:20017489_G_C:645,0,698:20017489
chr3	20017490	rs4858121	G	C	1033.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;DB;DP=25;ExcessHet=6.9897;FS=1.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=0.947;SOR=0.963;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,16:25:99:0|1:20017489_G_C:645,0,698:20017489
chr3	20020003	.	GTATGTT	G	858.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DP=41;ExcessHet=3.0103;FS=1.645;MQ=60.00;MQRankSum=0.00;QD=20.93;ReadPosRankSum=1.06;SOR=1.236;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,22:41:99:867,0,1305
chr3	20025665	rs34961993	G	GA	2251.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.93;ReadPosRankSum=0.380;SOR=0.639;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,23:52:99:550,0,668
chr3	20025925	rs45542931	G	A	843.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=68;ExcessHet=3.0103;FS=2.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-6.650e-01;SOR=0.978;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,31:68:99:852,0,1019
chr3	20027769	rs12486526	A	G	135.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=-1.282e+00;SOR=1.981;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:143,0,26
chr3	20043793	rs55797296	A	G	186.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=-1.944e+00;SOR=0.859;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:195,0,174
chr3	20053812	rs62241337	T	C	279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.708e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-8.000e-01;SOR=0.941;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:288,0,274
chr3	20136611	rs2293140	C	T	736.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=1.19;SOR=0.358;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:77:332,0,77
chr3	20136645	rs2293141	A	T	957.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096e+00;DB;DP=26;ExcessHet=3.9794;FS=13.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=1.52;SOR=0.054;VQSLOD=14.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:396,0,424
chr3	20136959	rs12636856	A	G	84.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=2.10;SOR=0.283;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,213
chr3	20141265	rs41285057	G	C	274.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=1.28;SOR=1.022;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:134,0,29
chr3	20141301	rs11128939	T	G,C	920.92	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.42;DB;DP=11;ExcessHet=3.9794;FS=2.585;MQ=60.00;MQRankSum=0.00;QD=27.09;ReadPosRankSum=0.00;SOR=0.232;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,5,6:11:99:399,244,229,163,0,184
chr3	20141308	rs62243131	A	G	423.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.16;ReadPosRankSum=1.18;SOR=0.610;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:198,0,153
chr3	20141704	rs9917785	A	G	262.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=0.307;SOR=0.593;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,107
chr3	20142360	rs4858764	T	C	1616.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.04;DB;DP=18;ExcessHet=3.9794;FS=4.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.13;ReadPosRankSum=0.810;SOR=2.552;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:738,54,0
chr3	20143020	rs4858155	G	C	4494.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.41;DB;DP=70;ExcessHet=3.9794;FS=1.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=2.10;SOR=0.820;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2372,210,0
chr3	20156185	rs12490215	A	G	178.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=1.04;SOR=0.160;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:113,0,64
chr3	20156302	rs2365794	T	C	1494.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=21;ExcessHet=3.9794;FS=5.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=-6.200e-01;SOR=0.135;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:855,63,0
chr3	20161043	rs17006623	G	T	1530.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.406e+00;DB;DP=71;ExcessHet=3.9794;FS=2.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=1.82;SOR=0.452;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,38:71:99:883,0,868
chr3	20188074	rs2686314	C	T	4049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.85;POSITIVE_TRAIN_SITE;QD=26.52;SOR=2.813;VQSLOD=4.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1250,96,0
chr3	20188162	rs10675663	A	ATT	1143.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=6.518;VQSLOD=6.58;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:20188162_A_ATT:310,21,0:20188162
chr3	20188164	rs56930557	T	A	1143.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.76;SOR=6.439;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:21:1|1:20188162_A_ATT:310,21,0:20188162
chr3	20212189	rs1052930	A	G	1950.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.630e-01;DB;DP=18;ExcessHet=3.0103;FS=1.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=-4.000e-01;SOR=1.235;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:291,0,231
chr3	21447274	rs409972	A	C	541.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=5;ExcessHet=3.9794;FS=3.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.352;SOR=0.269;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:171,15,0
chr3	21447336	rs409974	G	A	488.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=8;ExcessHet=3.9794;FS=2.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.00;SOR=0.269;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:63:0|1:21447336_G_A:268,0,63:21447336
chr3	21447337	rs371532	C	A	488.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650e-01;DB;DP=9;ExcessHet=3.9794;FS=4.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=-2.820e-01;SOR=0.180;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:63:0|1:21447336_G_A:268,0,63:21447336
chr3	21447525	rs366161	G	A	4582.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=81;ExcessHet=3.9794;FS=1.110;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.904;SOR=0.783;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2441,243,0
chr3	21447799	rs430387	T	C	8735.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.90;DB;DP=88;ExcessHet=3.0103;FS=2.366;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.80;ReadPosRankSum=-3.770e-01;SOR=0.528;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3175,264,0
chr3	21447834	rs440905	C	T	11256.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.854;DB;DP=130;ExcessHet=3.0103;FS=1.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=0.893;SOR=0.540;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4390,389,0
chr3	21447896	rs800605	A	G	15491.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.300e-01;DB;DP=230;ExcessHet=3.0103;FS=0.673;MQ=60.00;MQRankSum=0.00;QD=23.58;ReadPosRankSum=-1.465e+00;SOR=0.850;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,230:230:99:6873,689,0
chr3	21447901	rs112237068	A	ACC	16257.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=230;ExcessHet=3.9794;FS=1.869;MQ=60.00;MQRankSum=0.00;QD=24.71;ReadPosRankSum=-6.470e-01;SOR=0.869;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,226:230:99:9409,701,0
chr3	21447957	rs776644	C	T	15776.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.000e-01;DB;DP=306;ExcessHet=3.9794;FS=0.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.031;SOR=0.747;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,306:306:99:8882,913,0
chr3	21448285	rs409062	A	G	892.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DB;DP=13;ExcessHet=3.9794;FS=3.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=1.10;SOR=1.435;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:480,39,0
chr3	21448343	rs366609	T	C	830.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=7;ExcessHet=3.0103;FS=3.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=0.400;SOR=1.811;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:223,21,0
chr3	21462754	rs451242	A	G	6423.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=1.644;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3387,330,0
chr3	21462787	rs427233	G	A	13732.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=0.945;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4234,423,0
chr3	21462880	rs4455340	A	G	1730.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087e+00;DB;DP=162;ExcessHet=3.0103;FS=0.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=0.256;SOR=0.622;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,78:162:99:1739,0,2091
chr3	21465354	rs811358	G	A	2069.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.435e+00;DB;DP=31;ExcessHet=6.9897;FS=7.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=1.29;SOR=0.274;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:382,0,566
chr3	21478152	rs1702781	T	G	1175.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.93;SOR=5.353;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:312,24,0
chr3	21792602	rs62236195	G	C	303.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=1.28;SOR=1.270;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:152,0,150
chr3	22423338	rs4472062	G	C	2759.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=55.28;QD=34.50;SOR=2.362;VQSLOD=2.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:740,69,0
chr3	22423915	.	TGAAGAAGATGAA	T	522.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DP=33;ExcessHet=3.9794;FS=0.968;MQ=57.37;MQRankSum=-1.219e+00;QD=7.92;ReadPosRankSum=1.31;SOR=0.502;VQSLOD=0.270;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,14:33:99:531,0,2024
chr3	23312541	rs12106681	C	G	838.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=80;ExcessHet=3.0103;FS=6.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-8.390e-01;SOR=1.403;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,35:80:99:847,0,1067
chr3	23364883	rs9844558	G	A	3320.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=-2.670e-01;SOR=0.641;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:356,0,220
chr3	23942670	rs369838815	CT	CTT,C	140.92	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.14;ReadPosRankSum=0.172;SOR=0.384;VQSLOD=5.47;culprit=QD	GT:AD:DP:GQ:PL	1/2:3,5,4:12:35:113,35,110,49,0,134
chr3	23963061	.	GTT	G	56.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.31;ReadPosRankSum=1.04;SOR=1.179;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:45:65,0,45
chr3	24006477	rs4858097	T	A	6605.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=2.473;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2080,183,0
chr3	24006726	.	CTTT	C	179.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-01;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.349;SOR=1.038;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:12:79:79,0,205
chr3	24169361	rs1667765	T	C	1027.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.633e+00;DB;DP=46;ExcessHet=3.9794;FS=4.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.572;SOR=0.159;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:606,0,829
chr3	25542571	rs2116703	G	A	92.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.61;ReadPosRankSum=0.035;SOR=0.330;VQSLOD=22.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:9:54:54,0,200
chr3	25543022	rs41285067	C	T	126.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.464;SOR=0.527;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:135,0,150
chr3	25611472	rs369808161	GACACACACAC	G	620.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.23;ReadPosRankSum=1.07;SOR=1.358;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:18:205,0,18
chr3	25647632	rs73051956	A	G	709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=3.9794;FS=2.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=1.41;SOR=1.286;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:72:152,0,72
chr3	25659793	rs45438599	T	C	611.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425e+00;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.90;SOR=0.551;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:620,0,768
chr3	25761373	rs57633732	A	AT	145.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.55;ReadPosRankSum=0.328;SOR=1.609;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:78,9,0
chr3	25773597	rs10780014	T	G	165.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=3.611;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	25775253	rs1488992	T	C	1166.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=5.283;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:334,24,0
chr3	25775356	rs6550987	A	C	5024.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=1.958;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2119,195,0
chr3	25805390	rs2101477	C	T	837.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.48;SOR=4.892;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr3	25805879	rs11129208	T	C	1563.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=4.271;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:745,66,0
chr3	25836023	rs9831075	C	T	2400.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.80;SOR=2.406;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:747,63,0
chr3	25836088	rs9834955	C	A	652.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.68;SOR=5.784;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr3	25900464	rs4681081	T	C	1081.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.67;SOR=6.804;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:215,18,0
chr3	25902401	rs4681082	G	C	500.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=1.609;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:238,24,0
chr3	25902442	rs58687033	TTTAA	T	201	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.71;ReadPosRankSum=-1.383e+00;SOR=0.527;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	25904394	rs6550999	T	C	3275.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.267e+00;DB;DP=38;ExcessHet=3.0103;FS=1.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=-8.570e-01;SOR=0.986;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1221,114,0
chr3	27157830	rs2272075	C	T	103.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.49;SOR=2.833;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr3	27184801	rs10865812	T	A	950.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=14;ExcessHet=6.9897;FS=1.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.078;SOR=0.895;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:81:81,0,358
chr3	27203864	rs62255210	C	T	676.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.502;SOR=0.204;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:49:317,0,49
chr3	27204052	rs17854381	G	A	2313.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.152e+00;DB;DP=66;ExcessHet=6.9897;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.701;SOR=0.757;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,41:66:99:993,0,663
chr3	27233376	rs11926580	G	T	632.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208e+00;DB;DP=15;ExcessHet=6.9897;FS=2.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.311;SOR=1.557;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:114,0,397
chr3	27233498	rs11926556	C	A	3356.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e+00;DB;DP=72;ExcessHet=6.9897;FS=1.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.711;SOR=0.589;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:889,0,848
chr3	27243045	rs17680166	G	C	3467.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DB;DP=72;ExcessHet=6.9897;FS=2.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.220;SOR=0.833;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,36:72:99:939,0,885
chr3	27243119	rs17680194	G	A	2273.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=52;ExcessHet=6.9897;FS=1.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-9.200e-02;SOR=0.844;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,24:52:99:548,0,638
chr3	27243871	rs34940413	T	C	2591.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.490e-01;DB;DP=74;ExcessHet=6.9897;FS=1.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=-9.500e-02;SOR=0.812;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,26:74:99:544,0,1242
chr3	27294507	rs2166214	A	T	2115.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=-1.790e-01;SOR=0.675;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:397,0,288
chr3	27296796	rs1550769	C	G	3939.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=85;ExcessHet=3.9794;FS=0.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=2.08;SOR=0.748;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,43:85:99:1100,0,1056
chr3	27296822	rs1550768	A	T	3397.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=77;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=0.660;SOR=0.670;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:1033,0,910
chr3	27296994	rs3214746	TA	T	259.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=0.524;SOR=2.147;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:17:78,0,17
chr3	27297619	rs12488147	A	T	543.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=-1.602e+00;SOR=1.329;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:88:88,0,286
chr3	27297684	rs12494667	C	A	1906.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.494e+00;DB;DP=27;ExcessHet=3.9794;FS=4.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=-9.200e-02;SOR=1.720;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:476,0,412
chr3	27297816	rs3213930	G	C	5727.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050e-01;DB;DP=92;ExcessHet=3.9794;FS=1.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.350;SOR=0.832;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,43:92:99:930,0,1376
chr3	27326097	rs11129280	G	T	724.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=27;ExcessHet=6.9897;FS=1.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-2.480e-01;SOR=0.984;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:268,0,385
chr3	27326451	rs10510594	A	G	1926.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870e-01;DB;DP=45;ExcessHet=6.9897;FS=4.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-2.500e-02;SOR=1.092;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:470,0,619
chr3	27326553	rs34894168	AC	A	449.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DB;DP=13;ExcessHet=6.9897;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-9.880e-01;SOR=0.096;VQSLOD=6.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:13:82:82,0,363
chr3	27329417	rs10510593	A	C	1115.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=1.30;SOR=0.510;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:232,0,206
chr3	27332282	rs62255594	C	T	1417.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.696e+00;DB;DP=48;ExcessHet=6.9897;FS=3.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-2.280e-01;SOR=0.404;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:601,0,598
chr3	27332409	rs60936670	CTCAAAACA	C	477.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.21;SOR=3.442;VQSLOD=5.90;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	27332534	.	T	A	72.92	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.22;SOR=0.693;VQSLOD=19.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	27332736	rs139214725	C	T	711.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.150e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-2.900e-02;SOR=0.643;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,27:40:99:720,0,309
chr3	27332820	rs10510592	A	G	3190.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688e+00;DB;DP=72;ExcessHet=6.9897;FS=0.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-2.447e+00;SOR=0.626;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,43:72:99:1036,0,718
chr3	27335350	rs633157	A	T	856.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.180e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=0.660;SOR=0.843;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:155,0,227
chr3	27337379	rs472146	T	C	284.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.64;ReadPosRankSum=-4.310e-01;SOR=2.093;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:75,0,69
chr3	27338424	rs4973870	C	A	594.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=-1.646e+00;SOR=0.557;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:158,0,277
chr3	27350384	rs77257134	G	T	1765.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DB;DP=27;ExcessHet=6.9897;FS=0.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-1.109e+00;SOR=0.784;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:206,0,405
chr3	27350635	rs10662525	G	GTTT	158.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:37:81,0,37
chr3	27353716	rs552647	C	A	3686.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=50;ExcessHet=3.9794;FS=4.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=0.520;SOR=1.093;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,27:50:99:686,0,650
chr3	27355541	rs1472145	T	C	194.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-5.980e-01;SOR=0.473;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:64:64,0,72
chr3	27363637	rs11393122	T	TA	1587.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=27;ExcessHet=3.9794;FS=2.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=-9.870e-01;SOR=0.426;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:240,0,338
chr3	27387462	rs56104872	G	GGTAA	1777.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.46;SOR=1.949;VQSLOD=4.53;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:27387462_G_GGTAA:720,48,0:27387462
chr3	27387463	rs2370957	C	A	1780.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.00;SOR=2.191;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:27387462_G_GGTAA:720,48,0:27387462
chr3	27394419	rs12494966	T	G	2659.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436e+00;DB;DP=55;ExcessHet=6.9897;FS=16.941;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-3.950e-01;SOR=0.181;VQSLOD=12.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:865,0,633
chr3	27421025	rs9825316	G	A	388.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=1.65;SOR=0.874;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,104
chr3	27424718	rs1472256	A	G	12832.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.531;DB;DP=157;ExcessHet=3.0103;FS=1.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=-1.090e+00;SOR=0.886;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4700,470,0
chr3	27427225	rs1472254	A	G	164.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=3.258;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	27427521	rs9823689	A	G	1541.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=1.22;SOR=0.735;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,32:59:99:803,0,646
chr3	27432995	rs2307032	T	C	448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.250e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=1.12;SOR=0.569;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:457,0,371
chr3	27433397	rs2307035	A	T	135.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.709;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.349;SOR=0.551;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:144,0,173
chr3	27439549	rs2055122	C	T	691.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.44;ReadPosRankSum=0.00;SOR=0.495;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr3	27439586	.	T	TA	184.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.33;ReadPosRankSum=-5.660e-01;SOR=2.584;VQSLOD=5.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:15:193,0,15
chr3	27442115	rs115356840	C	G	423.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=15;ExcessHet=3.0103;FS=5.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.915;SOR=3.611;VQSLOD=15.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:432,0,125
chr3	27444524	rs1967131	G	C	45.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.66;ReadPosRankSum=1.47;SOR=0.169;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:54:54,0,233
chr3	27451106	rs9828914	G	C	55.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,74
chr3	27463420	rs6551200	A	C	283.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=4.174;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr3	27475351	rs3278	G	A	987.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583e+00;DB;DP=79;ExcessHet=3.0103;FS=1.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-1.116e+00;SOR=0.473;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,42:79:99:996,0,1014
chr3	27478129	rs71087606	G	GA	32.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.07;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:25:41,0,25
chr3	27478834	rs2029617	C	T	1195.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DB;DP=26;ExcessHet=3.9794;FS=1.329;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=1.42;SOR=0.509;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,20:26:99:616,0,164
chr3	27478899	rs2029618	A	G	1046.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204e+00;DB;DP=69;ExcessHet=3.0103;FS=2.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-1.276e+00;SOR=0.475;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,43:69:99:1055,0,600
chr3	27489996	rs9883830	A	G	555.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=1.24;SOR=1.721;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr3	27494620	rs12639265	A	T	764.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.151;SOR=0.681;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:773,0,599
chr3	27525708	rs6768359	C	T	1302.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DB;DP=47;ExcessHet=3.9794;FS=0.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-1.600e-01;SOR=0.874;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:599,0,563
chr3	27525831	rs410934	T	C	644.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=-9.670e-01;SOR=2.948;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
chr3	27759322	rs34777083	TA	T	1103.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=41;ExcessHet=3.9794;FS=3.693;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=-3.300e-02;SOR=1.001;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,18:41:99:369,0,293
chr3	27759404	rs2581183	C	T	347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-1.540e-01;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:356,0,306
chr3	28283101	rs370517451	G	A	103.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.76;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:25:111,0,25
chr3	28294969	rs35232922	G	A	197.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=1.5490;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=0.524;SOR=3.383;VQSLOD=16.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:176,15,0
chr3	28358057	rs11706332	C	T	1874.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.209e+00;DB;DP=38;ExcessHet=1.5490;FS=4.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=-7.000e-02;SOR=1.788;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1382,114,0
chr3	28373154	rs13081520	T	G	760.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.59;ReadPosRankSum=-1.543e+00;SOR=3.258;VQSLOD=18.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:431,30,0
chr3	28373462	rs139773536	C	CA	1274.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.065;DB;DP=29;ExcessHet=1.5490;FS=3.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.198;SOR=0.296;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:90:837,90,0
chr3	28381887	rs3762797	A	T	1108.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.314e+00;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=1.33;SOR=0.627;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:811,66,0
chr3	28520417	rs1563656	T	A	2863.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.940e-01;DB;DP=41;ExcessHet=3.9794;FS=1.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=-6.140e-01;SOR=0.578;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:439,0,463
chr3	28533458	rs13099814	A	G	2120.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=31;ExcessHet=3.9794;FS=2.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=-2.440e-01;SOR=1.078;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:607,0,331
chr3	28552310	rs6777813	A	T	1053.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-1.432e+00;SOR=1.038;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:385,27,0
chr3	28557206	rs139024624	CTG	C,CTGTG	1666.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.25;DB;DP=14;ExcessHet=3.0103;FS=2.469;MQ=59.96;MQRankSum=0.00;QD=28.24;ReadPosRankSum=0.249;SOR=0.320;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,9,4:14:93:513,93,226,402,0,420
chr3	28557236	rs7617655	G	A	1777.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=27.35;ReadPosRankSum=0.130;SOR=0.768;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,13:18:99:477,0,253
chr3	29224786	rs11919232	T	C	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.330e-01;DB;DP=18;ExcessHet=3.0103;FS=2.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:184,0,299
chr3	29476428	rs3773018	G	A	2023.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=38;ExcessHet=1.5490;FS=16.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=-2.630e-01;SOR=2.360;VQSLOD=12.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:541,0,450
chr3	29476582	rs3773019	G	T	215.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=0.328;SOR=1.085;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,104
chr3	29529907	rs2371695	G	A	4439.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350e-01;DB;DP=57;ExcessHet=3.9794;FS=2.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=0.135;SOR=0.932;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,25:57:99:0|1:29529907_G_A:953,0,2036:29529907
chr3	29529913	rs3043392	TTC	T	4535.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=58;ExcessHet=3.9794;FS=1.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=0.243;SOR=0.884;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,25:58:99:0|1:29529907_G_A:950,0,2069:29529907
chr3	29781465	rs71091076	C	CA	92.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.87;ReadPosRankSum=0.903;SOR=0.465;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:29:29,0,65
chr3	29804300	rs7340719	C	A	655.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559e+00;DB;DP=13;ExcessHet=6.9897;FS=3.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-7.330e-01;SOR=1.293;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:163,0,245
chr3	29804487	rs1371839	A	T	4051.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990e+00;DB;DP=94;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-9.150e-01;SOR=0.691;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,47:94:99:1145,0,1187
chr3	29804509	rs1371840	T	C	3998.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315e+00;DB;DP=85;ExcessHet=6.9897;FS=1.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-2.070e-01;SOR=0.748;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,40:85:99:1000,0,1193
chr3	29922333	rs13324314	C	T	4044.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=113;ExcessHet=3.9794;FS=1.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.562;SOR=0.821;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,69:113:99:1941,0,1027
chr3	29922512	rs34422454	TC	T	791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DB;DP=22;ExcessHet=3.9794;FS=1.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.033;SOR=0.386;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,11:22:99:293,0,283
chr3	29925518	rs2218724	A	G	1992.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e+00;DB;DP=20;ExcessHet=3.9794;FS=6.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=-7.360e-01;SOR=2.649;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:360,0,231
chr3	29977739	rs1449287	T	C	4838.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=81;ExcessHet=1.5490;FS=4.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=-1.081e+00;SOR=1.163;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1286,0,1044
chr3	30732821	rs2276767	C	A	424.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-3.080e-01;SOR=0.551;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,14:39:99:433,0,814
chr3	30769514	.	AT	A	794.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DP=23;ExcessHet=3.9794;FS=1.584;MQ=60.00;MQRankSum=0.00;QD=17.65;ReadPosRankSum=1.01;SOR=1.270;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,14:23:99:326,0,184
chr3	30842229	rs34076805	T	C	122.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:71,0,32
chr3	30842298	rs9310948	GACACACAC	GAC,G	1669.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.70;SOR=3.258;VQSLOD=4.74;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,6,10:16:99:656,286,242,167,0,119
chr3	30842346	rs10553550	AAGAG	A	941.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.330e-01;DB;DP=34;ExcessHet=6.9897;FS=2.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.564;SOR=1.039;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,13:34:99:461,0,810
chr3	30842597	rs59931065	A	AT	809.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e-01;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.539;SOR=0.565;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,20:44:99:578,0,725
chr3	30885477	rs13064240	T	A	36.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.16;SOR=0.693;VQSLOD=15.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	30885806	rs1494738	T	C	5040.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.870e-01;DB;DP=66;ExcessHet=3.0103;FS=0.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=-9.510e-01;SOR=0.779;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2264,198,0
chr3	30935904	rs11921654	G	A	705.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821e+00;DB;DP=47;ExcessHet=3.0103;FS=1.354;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-6.510e-01;SOR=0.393;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:714,0,834
chr3	31617725	rs4574331	G	A	493.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.97;SOR=5.283;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr3	31621228	rs58289734	T	TAAA	1857.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=5.994;VQSLOD=5.52;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:27:405,27,0
chr3	31642037	rs11713598	A	T	2569.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.36;DB;DP=35;ExcessHet=3.9794;FS=1.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.368;SOR=1.018;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1234,104,0
chr3	31658678	rs368561756	C	CT	255.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-1.282e+00;SOR=1.688;VQSLOD=6.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,4:5:4:73,4,0
chr3	31659754	rs13083410	T	C	319.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=-1.890e-01;SOR=1.765;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr3	31663515	rs10662891	A	AGTGTG	3391.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=4.112;VQSLOD=6.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,21:21:78:1148,78,0
chr3	31667291	rs4955108	A	G	424.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=4.804;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr3	31677395	rs11129457	T	G	957.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=4.892;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:218,18,0
chr3	31744233	rs3805074	T	C	379.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=0.282;SOR=2.235;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:58:94,0,58
chr3	31839097	rs7628972	C	T	571.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.60;ReadPosRankSum=0.464;SOR=2.093;VQSLOD=4.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:146,0,174
chr3	31839135	rs7653447	A	G	1146.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-03;DB;DP=14;ExcessHet=1.5490;FS=3.199;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.31;ReadPosRankSum=-3.130e-01;SOR=2.147;VQSLOD=4.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:185,0,238
chr3	31839242	rs7643025	T	C	7364.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=84;ExcessHet=3.0103;FS=8.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.80;ReadPosRankSum=-8.570e-01;SOR=1.258;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,33:84:99:751,0,1125
chr3	31921535	rs11922484	T	C	162.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=1.65;SOR=1.371;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:115,0,65
chr3	31921624	rs7629505	A	G	156.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.64;SOR=3.258;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	32022333	rs10610936	GCACA	G	1334.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.79;ReadPosRankSum=-7.060e-01;SOR=0.800;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,17:36:99:669,0,735
chr3	32147977	rs6805518	T	G	217.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.49;ReadPosRankSum=1.15;SOR=0.446;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,1:4:26:26,0,114
chr3	32232582	rs58009329	C	T	1999.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=-1.072e+00;SOR=0.762;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,23:49:99:703,0,783
chr3	32232782	rs60078861	G	T	2450.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.990e-01;DB;DP=99;ExcessHet=3.9794;FS=0.508;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=0.778;SOR=0.627;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,52:99:99:1283,0,1173
chr3	32433585	rs3732845	G	C	1242.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=108;ExcessHet=3.0103;FS=0.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=1.76;SOR=0.784;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,50:108:99:1251,0,1350
chr3	32433737	rs145185011	G	GCCCCCGCGCTGGAGCTCAGT	219.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.35;ReadPosRankSum=-5.980e-01;SOR=0.892;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:114,0,564
chr3	32493682	rs342745	A	G	3348.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=1.691;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:868,66,0
chr3	32525732	rs445837	A	T	67.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:76,0,66
chr3	32544147	rs201598355	T	C	1105.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.544;DB;DP=98;ExcessHet=3.0103;FS=5.084;MQ=60.00;MQRankSum=0.00;QD=11.28;ReadPosRankSum=0.420;SOR=1.213;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1114,0,1134
chr3	32547953	rs164205	T	C	314.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=0.484;SOR=2.147;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:199,18,0
chr3	32547969	rs164204	A	G	268.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.60;ReadPosRankSum=0.967;SOR=2.833;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr3	32568145	.	CCACA	C,CCA	1237.69	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.529e+00;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.26;ReadPosRankSum=0.538;SOR=0.798;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,24:29:39:876,720,773,91,0,39
chr3	32571823	rs35467710	GA	G	537.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=41;ExcessHet=6.9897;FS=3.860;MQ=60.00;MQRankSum=0.00;QD=5.08;ReadPosRankSum=0.556;SOR=1.125;VQSLOD=5.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,12:41:99:222,0,423
chr3	32586245	rs55880857	A	G	218.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.62;SOR=1.329;VQSLOD=18.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr3	32587603	rs342732	T	C	1399.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.23;SOR=4.743;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
chr3	32612434	rs28403572	C	T	664.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.38;SOR=5.784;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:32612420_G_A:681,51,0:32612420
chr3	32746522	rs7429569	A	G	331.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=4.804;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:11:102,11,0
chr3	32758763	rs11129531	G	A	4407.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=1.808;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.29;SOR=0.486;VQSLOD=2.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2261,210,0
chr3	32761481	rs13092303	A	G	752.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=5.994;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:262,18,0
chr3	32769471	rs150924656	TTTTATTTATTTA	T	63.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=2.303;VQSLOD=5.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr3	32774754	rs9799359	T	C	189.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.71;SOR=3.611;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr3	32774782	rs9798936	A	G	542.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.13;ReadPosRankSum=0.345;SOR=2.303;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:260,18,0
chr3	32815231	rs2396631	A	T	3415.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=1.522;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:32815213_G_A:1041,99,0:32815213
chr3	32915097	rs62251955	T	G	173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-4.380e-01;SOR=0.473;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:182,0,297
chr3	32915214	rs6799979	C	G	11668.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=2.166;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3414,297,0
chr3	32927509	rs6774703	G	T	6590.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.79;SOR=0.996;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1703,165,0
chr3	32933360	.	C	CTT	2739.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DP=31;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.906;QD=24.91;ReadPosRankSum=1.77;SOR=1.232;VQSLOD=0.172;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:32933360_C_CTT:1372,93,0:32933360
chr3	32933370	rs200667818	CTT	C	2741.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.927;QD=25.16;ReadPosRankSum=1.75;SOR=0.474;VQSLOD=0.170;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:32933360_C_CTT:1373,93,0:32933360
chr3	32995928	rs2228428	C	T	1107.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.388e+00;DB;DP=45;ExcessHet=3.9794;FS=0.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-5.200e-02;SOR=0.792;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,27:45:99:631,0,449
chr3	33055721	rs4302331	A	G	8597.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=0.701;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3044,282,0
chr3	33063050	rs13093698	A	G	557.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=47;ExcessHet=3.0103;FS=4.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.366;SOR=1.671;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:566,0,653
chr3	33087842	rs35000357	C	G	312.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.170e-01;DB;DP=41;ExcessHet=3.0103;FS=2.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=-1.652e+00;SOR=1.260;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:321,0,685
chr3	33087914	rs34173901	G	C	163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=1.88;SOR=0.512;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:172,0,361
chr3	33093190	rs12632196	T	C	2633.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.310e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.21;ReadPosRankSum=1.65;SOR=0.990;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,15:19:92:455,0,92
chr3	33093628	rs6550200	A	C	1535.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=0.654;SOR=0.892;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,3:21:62:62,0,527
chr3	33093681	rs77890945	G	C	134.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.38;ReadPosRankSum=1.28;SOR=1.329;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:59:143,0,59
chr3	33099880	rs7637435	T	C	3108.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.05;SOR=2.478;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:696,66,0
chr3	33107060	rs34204221	A	G	428.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.620e-01;DB;DP=36;ExcessHet=3.0103;FS=1.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=1.60;SOR=0.473;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:437,0,400
chr3	33109487	rs9865113	T	C	196.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.78;SOR=2.303;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr3	33110190	rs11129543	G	T	308.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=1.83;SOR=2.147;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:74:115,0,74
chr3	33110656	rs7610916	T	C	998.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.08;SOR=3.767;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:310,24,0
chr3	33138544	rs7614776	A	G	51870.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.33;DB;DP=566;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.95;ReadPosRankSum=0.101;SOR=0.680;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:302,264:566:99:0|1:33138544_A_G:10016,0,13208:33138544
chr3	33138549	rs7637099	G	A	40490.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-02;DB;DP=574;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=0.430;SOR=0.701;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:308,266:574:99:0|1:33138544_A_G:10134,0,13330:33138544
chr3	33138763	rs7637133	C	A	4135.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.11;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.33;ReadPosRankSum=0.704;SOR=1.802;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,23:45:99:0|1:33138763_C_A:894,0,1432:33138763
chr3	33138764	rs17522953	G	C	4135.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.19;ReadPosRankSum=0.146;SOR=1.964;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,23:43:99:0|1:33138763_C_A:894,0,1432:33138763
chr3	33156196	rs7611841	T	C	769.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.98;ReadPosRankSum=1.96;SOR=3.258;VQSLOD=18.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr3	33165303	rs4320036	C	G	432.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-1.890e-01;SOR=0.223;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:146,0,130
chr3	33165436	rs6777433	T	A	2479.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=66;ExcessHet=6.9897;FS=3.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-1.560e-01;SOR=0.923;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:674,0,951
chr3	33171659	rs4392367	A	G	917.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.990e-01;DB;DP=22;ExcessHet=6.9897;FS=5.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-7.910e-01;SOR=0.174;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:397,0,284
chr3	33175793	rs4234239	C	A	1804.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DB;DP=56;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.199;SOR=0.720;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:581,0,874
chr3	33194138	rs6773595	T	C	519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,1:4:30:0|1:33194138_T_C:30,0,243:33194138
chr3	33194150	rs6809162	C	T	362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.909;SOR=1.371;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:33194138_T_C:105,0,109:33194138
chr3	33194990	rs6810039	C	A	8146.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.851e+00;DB;DP=222;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=0.010;SOR=0.661;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,78:222:99:1710,0,4054
chr3	33195284	rs61743511	G	A	4522.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=158;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.12;SOR=0.697;VQSLOD=6.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,80:158:99:2156,0,2063
chr3	33195309	rs61743461	A	G	4473.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;DB;DP=166;ExcessHet=3.9794;FS=1.239;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.200e+00;SOR=0.676;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:84,82:166:99:2037,0,2103
chr3	33216350	rs4257493	G	A	4111.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.56;DB;DP=162;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=1.17;SOR=0.712;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,71:162:99:1856,0,2433
chr3	33216734	rs4465894	A	G	1525.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=46;ExcessHet=3.9794;FS=6.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-6.290e-01;SOR=1.655;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:656,0,605
chr3	33255592	rs9637517	A	G	5093.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=76;ExcessHet=3.9794;FS=0.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=-1.531e+00;SOR=0.614;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:864,0,1070
chr3	33260403	rs71325130	C	A	1735.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=31;ExcessHet=6.9897;FS=0.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.466;SOR=0.824;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:350,0,509
chr3	33318798	rs77302970	G	A	242.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-7.160e-01;SOR=0.648;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:251,0,383
chr3	33344425	rs36064115	G	GA	212.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=24;ExcessHet=3.0103;FS=5.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=0.090;SOR=2.910;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,9:24:99:221,0,418
chr3	33414468	rs4678933	G	C	982.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.170;SOR=0.784;VQSLOD=5.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:365,0,285
chr3	33414923	rs2291898	G	A	2130.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=63;ExcessHet=3.9794;FS=1.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=2.15;SOR=0.756;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,34:63:99:996,0,908
chr3	33426900	rs79517267	T	C	33.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=1.96;ReadPosRankSum=-1.450e+00;SOR=0.223;VQSLOD=21.99;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:42:42,0,425
chr3	33434128	rs62252101	G	A	1845.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=56;ExcessHet=3.9794;FS=0.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.980;SOR=0.612;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,22:56:99:557,0,910
chr3	33434831	rs2293250	G	A	2383.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=65;ExcessHet=3.9794;FS=0.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=0.894;SOR=0.606;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:618,0,850
chr3	33442661	rs80066236	C	T	53.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,161
chr3	33444286	rs623244	T	G	3944.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.516e+00;DB;DP=62;ExcessHet=3.9794;FS=0.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=0.917;SOR=0.615;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,43:62:99:1044,0,500
chr3	33453326	rs72852080	C	T	74.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-6.520e-01;SOR=0.495;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:83:83,0,130
chr3	33453379	rs138167498	AT	A	43.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:21:52,0,21
chr3	33454073	rs35702863	CA	C	476.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=22;ExcessHet=6.9897;FS=4.202;MQ=60.00;MQRankSum=0.00;QD=11.09;ReadPosRankSum=0.131;SOR=2.513;VQSLOD=4.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:22:99:173,0,180
chr3	33458266	rs3736563	T	C	4286.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e-01;DB;DP=133;ExcessHet=3.9794;FS=2.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.088;SOR=0.860;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,68:133:99:1651,0,1649
chr3	33467364	rs61620772	T	TTTTAA	199.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.794;SOR=0.197;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:99:111,0,334
chr3	33540329	rs6782108	T	C	1834.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=26;ExcessHet=3.9794;FS=1.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=-1.540e-01;SOR=1.259;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:425,0,413
chr3	33552004	rs2049281	T	C	960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.330e-01;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-9.090e-01;SOR=0.542;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:317,0,461
chr3	33552351	rs6767854	A	T	455.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-2.010e-01;SOR=0.859;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:268,21,0
chr3	33555911	rs2049338	C	T	1856.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=6.273;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:726,54,0
chr3	33558359	rs1357542	C	A	694.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=0.700;SOR=1.981;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:109,0,70
chr3	33558407	rs1357541	T	C	1060.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=0.204;SOR=1.501;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:141,0,211
chr3	33592978	rs34937822	A	AT	416.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.90;ReadPosRankSum=-6.890e-01;SOR=1.460;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:38:85,0,38
chr3	33605300	rs7643855	G	A	1368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523e+00;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-3.700e-02;SOR=0.637;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,19:26:99:533,0,188
chr3	33607895	rs72854383	T	C	59.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:39:68,0,39
chr3	33612364	rs67476972	TA	T	1382.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=0.560;SOR=1.134;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,20:23:44:491,44,0
chr3	33615874	rs9841413	G	A	876.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.971;DB;DP=22;ExcessHet=3.9794;FS=3.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=2.10;SOR=1.285;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:257,0,334
chr3	33618551	rs11391504	G	GA	813.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.05;SOR=2.910;VQSLOD=6.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr3	33626229	rs72854395	A	G	138.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013e+00;DB;DP=25;ExcessHet=3.0103;FS=1.734;MQ=60.00;MQRankSum=0.00;QD=5.53;ReadPosRankSum=0.765;SOR=0.307;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:147,0,434
chr3	33645812	rs199958865	C	CT	64.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250e-01;DB;DP=10;ExcessHet=3.9794;FS=11.897;MQ=60.00;MQRankSum=0.00;QD=2.47;ReadPosRankSum=-1.213e+00;SOR=0.010;VQSLOD=0.368;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,3:10:41:41,0,128
chr3	33648689	rs79122504	A	G	87.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:96,0,104
chr3	33731115	rs75350211	T	A	173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.40;SOR=0.399;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:182,0,298
chr3	33877500	rs34046608	C	CT	333.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.52;ReadPosRankSum=-6.060e-01;SOR=0.773;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,16:37:99:342,0,361
chr3	33893929	.	CT	C	479.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.900e-02;DP=30;ExcessHet=3.9794;FS=0.000;MQ=59.69;MQRankSum=-5.690e-01;QD=5.93;ReadPosRankSum=-2.700e-02;SOR=0.685;VQSLOD=0.451;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,6:30:91:91,0,263
chr3	33905555	rs28381977	G	A	1227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=96;ExcessHet=3.0103;FS=2.675;MQ=60.00;MQRankSum=0.00;QD=12.78;ReadPosRankSum=0.264;SOR=0.731;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,50:96:99:1236,0,1021
chr3	35778773	rs2278757	A	G	3756.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DB;DP=124;ExcessHet=3.9794;FS=2.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=0.399;SOR=0.529;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,64:124:99:1671,0,1508
chr3	35778908	rs11927763	A	G	1369.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DB;DP=41;ExcessHet=3.9794;FS=6.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=0.368;SOR=1.446;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:671,0,405
chr3	35779750	rs2012153	A	G	2739.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.826;DB;DP=90;ExcessHet=3.9794;FS=1.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=1.96;SOR=0.770;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,45:90:99:1186,0,1121
chr3	35780734	rs876159	G	T	3246.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.353;DB;DP=162;ExcessHet=3.9794;FS=2.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.929;SOR=0.822;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,58:162:99:1381,0,2728
chr3	35785206	rs11712442	G	C	897.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.566e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=1.37;SOR=1.038;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:303,0,391
chr3	35785296	rs6550367	T	C	2195.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;DB;DP=74;ExcessHet=3.9794;FS=9.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=2.47;SOR=0.284;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,39:74:99:992,0,967
chr3	36422403	rs62245718	T	G	1045.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=2.00;SOR=0.484;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,33:74:99:1053,0,1363
chr3	36484746	rs9865125	G	T	703.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.14;SOR=1.739;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:253,18,0
chr3	36524206	rs1456074	C	T	64.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:72,0,33
chr3	36534977	rs139618953	CATATAT	C	167.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=7;ExcessHet=3.9794;FS=2.884;MQ=60.00;MQRankSum=0.00;QD=9.83;ReadPosRankSum=-4.930e-01;SOR=0.088;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:139,0,216
chr3	36547133	rs11711733	A	G	570.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.004e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=0.986;SOR=0.957;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:261,0,159
chr3	36872193	rs3732385	C	A	487.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=0.091;SOR=0.576;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:213,0,131
chr3	36872224	rs3732384	T	C	821.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=-3.090e-01;SOR=0.732;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:320,0,199
chr3	36884315	rs76226662	C	T	571.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.270e-01;DB;DP=44;ExcessHet=3.0103;FS=1.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-3.670e-01;SOR=1.035;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:580,0,728
chr3	36884370	rs6771655	C	A	1152.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=-6.670e-01;SOR=0.800;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:322,0,221
chr3	36887973	rs4678910	C	G	2342.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=64;ExcessHet=6.9897;FS=0.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=0.056;SOR=0.614;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,27:64:99:655,0,1072
chr3	36888064	rs4678911	G	T	992.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.970e-01;DB;DP=25;ExcessHet=6.9897;FS=7.036;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.435;SOR=0.231;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:251,0,396
chr3	36893965	rs17195098	C	T	200.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.319;SOR=1.270;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,159
chr3	36896653	rs9818599	G	C	10860.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=2.317;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2694,245,0
chr3	36898036	rs62245253	G	A	1926.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=179;ExcessHet=3.0103;FS=2.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.76;ReadPosRankSum=2.57;SOR=0.624;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,78:179:99:1935,0,2503
chr3	36906194	rs9838909	C	T	1735.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=3.516;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:468,33,0
chr3	36915447	rs373590008	TA	T	170.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.85;MQRankSum=0.00;QD=5.87;ReadPosRankSum=0.349;SOR=0.622;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:83:113,0,83
chr3	36915814	rs4296548	T	G	1720.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DB;DP=13;ExcessHet=3.9794;FS=3.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.643;SOR=0.328;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:215,0,206
chr3	37048633	rs4234259	A	G	1492.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=37;ExcessHet=6.9897;FS=0.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-4.100e-01;SOR=0.548;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,12:37:99:345,0,715
chr3	37070106	rs2286940	C	T	394.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=3;ExcessHet=6.9897;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=-2.410e-01;SOR=2.303;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:77,0,33
chr3	37083505	rs41552415	C	T	372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:381,0,197
chr3	37083740	rs9876116	A	G	5242.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=131;ExcessHet=6.9897;FS=2.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.421;SOR=0.803;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,72:131:99:1635,0,1244
chr3	37089840	rs11290150	CT	C	582.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-2.810e-01;SOR=1.678;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:234,0,203
chr3	37090274	rs2241031	C	T	1166.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753e+00;DB;DP=12;ExcessHet=6.9897;FS=4.963;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.207;SOR=0.306;VQSLOD=7.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:246,0,180
chr3	37095070	rs10849	C	T	358.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=0.00;SOR=2.670;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:145,0,25
chr3	37096109	rs113420512	T	TAAC	1675.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.310e+00;DB;DP=24;ExcessHet=6.9897;FS=1.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=0.487;SOR=0.435;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,12:24:99:447,0,576
chr3	37096377	rs3214347	C	CAA	1440.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478e+00;DB;DP=16;ExcessHet=6.9897;FS=1.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=-7.740e-01;SOR=0.380;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:267,0,393
chr3	37100166	rs72523902	CAAA	C	1090.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DB;DP=24;ExcessHet=6.9897;FS=0.961;MQ=60.00;MQRankSum=0.00;QD=16.53;ReadPosRankSum=-8.700e-01;SOR=0.885;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,12:24:99:425,0,385
chr3	37107022	rs7639375	C	A	3059.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;DB;DP=68;ExcessHet=6.9897;FS=6.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-6.740e-01;SOR=1.101;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,34:68:99:846,0,919
chr3	37107470	rs2302503	G	A	2010.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660e-01;DB;DP=60;ExcessHet=6.9897;FS=3.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.670e-01;SOR=0.476;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,19:60:99:388,0,1118
chr3	37116386	rs2302504	G	T	2117.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601e+00;DB;DP=54;ExcessHet=6.9897;FS=3.302;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.381;SOR=1.018;VQSLOD=6.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:737,0,709
chr3	37116808	rs11709376	C	G	334.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr3	37132719	rs113267946	GA	G	392.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=8;ExcessHet=6.9897;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=14.55;ReadPosRankSum=-5.660e-01;SOR=2.935;VQSLOD=4.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:56:115,0,56
chr3	37133124	rs2302506	A	G	924.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e+00;DB;DP=13;ExcessHet=6.9897;FS=3.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-3.950e-01;SOR=0.265;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:207,0,202
chr3	37144535	rs2302507	C	A	1342.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.111e+00;DB;DP=36;ExcessHet=6.9897;FS=2.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.341;SOR=1.008;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:547,0,578
chr3	37150988	rs6806252	C	G	570.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.886;DB;DP=19;ExcessHet=6.9897;FS=9.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-3.240e-01;SOR=2.833;VQSLOD=15.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:120,0,416
chr3	37163039	rs336595	G	A	4918.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=1.079;VQSLOD=18.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1081,111,0
chr3	37170717	rs3733030	T	C	1848.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103e+00;DB;DP=35;ExcessHet=6.9897;FS=2.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.381;SOR=0.956;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:542,0,438
chr3	37170750	rs3733029	G	C	1367.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=21;ExcessHet=6.9897;FS=2.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.816;SOR=0.346;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:345,0,368
chr3	37285152	rs2271548	C	T	2857.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014e+00;DB;DP=66;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.783;SOR=0.736;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:742,0,947
chr3	37293116	rs112817114	CT	C	405.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.30;ReadPosRankSum=0.00;SOR=0.610;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:62:163,0,62
chr3	37308262	rs73059487	A	T	794.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=21;ExcessHet=6.9897;FS=4.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-8.110e-01;SOR=1.473;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:278,0,341
chr3	37308532	rs1040073	C	T	1184.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.983e+00;DB;DP=21;ExcessHet=6.9897;FS=1.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-5.010e-01;SOR=1.134;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:347,0,287
chr3	37327629	rs58146171	C	T	567.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=16;ExcessHet=6.9897;FS=3.452;MQ=58.77;MQRankSum=-6.450e-01;NEGATIVE_TRAIN_SITE;QD=6.68;ReadPosRankSum=0.285;SOR=1.234;VQSLOD=-2.238e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:88:287,0,88
chr3	37330878	rs75862470	T	C	388.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=34;ExcessHet=3.0103;FS=1.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=0.514;SOR=1.096;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:397,0,611
chr3	37366459	rs11718848	C	A	2008.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DB;DP=52;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-1.830e-01;SOR=0.720;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:734,0,600
chr3	37368755	rs62241896	T	A	1755.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=43;ExcessHet=6.9897;FS=1.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-6.200e-02;SOR=0.605;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,18:43:99:486,0,598
chr3	37369146	rs144843512	C	G	858.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-01;DB;DP=55;ExcessHet=3.0103;FS=3.908;MQ=60.00;MQRankSum=0.00;QD=15.60;ReadPosRankSum=-7.370e-01;SOR=1.289;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,34:55:99:867,0,501
chr3	37369724	rs4021346	G	GAC,GACACACACAC	211.58	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.485e+00;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.26;ReadPosRankSum=-1.529e+00;SOR=0.346;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,3:6:79:222,129,117,79,0,112
chr3	37369771	rs5847960	ACTCT	A	1597.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=22;ExcessHet=6.9897;FS=0.904;MQ=60.00;MQRankSum=0.00;QD=17.37;ReadPosRankSum=1.49;SOR=0.908;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:384,0,474
chr3	37376500	rs11396224	C	CT	147.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=0.732;SOR=1.179;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:60:60,0,152
chr3	37388577	rs3832257	C	CA	4629.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.590e-01;DB;DP=96;ExcessHet=6.9897;FS=0.418;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=-2.420e-01;SOR=0.742;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,40:96:99:1204,0,1795
chr3	37407489	rs17266090	A	G	2420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.892;DB;DP=59;ExcessHet=6.9897;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.547;SOR=0.777;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,26:59:99:577,0,789
chr3	37407664	rs62241901	G	T	1523.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=29;ExcessHet=6.9897;FS=3.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.036;SOR=1.170;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:389,0,402
chr3	37514627	rs36109791	CA	C	46.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:11:31,0,11
chr3	37522828	rs197757	G	A	718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.623e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-7.210e-01;SOR=0.495;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:239,0,426
chr3	37535865	rs472893	T	C	2358.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=0.692;SOR=2.531;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1037,75,0
chr3	37535866	rs539108	G	A	1541.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=25;ExcessHet=3.9794;FS=5.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=1.16;SOR=0.111;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:219,0,543
chr3	37535891	rs113955648	G	A	866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=0.340;SOR=0.476;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,27:43:99:875,0,449
chr3	37535984	rs2507940	C	G	7522.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.23;DB;DP=121;ExcessHet=3.9794;FS=3.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=0.206;SOR=0.929;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,61:121:99:1578,0,1569
chr3	37536225	rs267523	C	A	4550.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=48;ExcessHet=3.0103;FS=2.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.54;ReadPosRankSum=-9.540e-01;SOR=0.392;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1664,144,0
chr3	37536306	rs267522	C	T	591.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=0.437;SOR=1.802;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:64:167,0,64
chr3	37558819	rs155522	G	T	2252.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=22;ExcessHet=3.0103;FS=1.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=1.55;SOR=1.478;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:684,66,0
chr3	37560577	.	C	CT	628.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.460e-01;DP=36;ExcessHet=6.9897;FS=6.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=0.473;SOR=0.200;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:36:99:320,0,141
chr3	37560597	rs17815094	C	T	3917.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.400e-01;DB;DP=49;ExcessHet=3.0103;FS=2.627;MQ=60.00;MQRankSum=0.00;QD=31.60;ReadPosRankSum=2.59;SOR=1.220;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1947,147,0
chr3	37574951	rs267561	G	A	8642.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290e+00;DB;DP=139;ExcessHet=3.9794;FS=1.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=0.493;SOR=0.837;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,66:139:99:1518,0,1800
chr3	37575039	rs267560	G	A	3595.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762e+00;DB;DP=46;ExcessHet=3.9794;FS=1.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=-1.520e+00;SOR=0.908;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:676,0,632
chr3	37583851	rs2844349	A	C	1236.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-03;DB;DP=35;ExcessHet=3.9794;FS=2.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=1.17;SOR=1.052;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,23:35:99:676,0,365
chr3	37627112	rs1155741	T	C	6416.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;DB;DP=92;ExcessHet=3.9794;FS=0.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=1.35;SOR=0.621;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,44:92:99:1157,0,1196
chr3	37627149	rs1155742	G	A	2257.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-02;DB;DP=99;ExcessHet=3.9794;FS=4.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.42;SOR=0.501;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1291,0,1319
chr3	37627286	rs140414819	G	GCC	574.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.39;DB;DP=43;ExcessHet=3.9794;FS=2.405;MQ=60.00;MQRankSum=0.00;QD=7.76;ReadPosRankSum=1.31;SOR=1.110;VQSLOD=5.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,17:43:99:388,0,1588
chr3	37627287	rs2364183	G	C	2027.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=40;ExcessHet=3.9794;FS=3.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=0.541;SOR=1.259;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,17:40:99:676,0,1585
chr3	37670876	rs2282485	G	C	895.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=23;ExcessHet=3.9794;FS=2.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=0.595;SOR=1.148;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:431,0,206
chr3	37670985	rs147632699	GATAAA	G	209.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=1.981;VQSLOD=6.12;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr3	37695192	rs3821909	G	A	4458.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297e+00;DB;DP=182;ExcessHet=3.9794;FS=7.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-1.680e-01;SOR=0.428;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,103:182:99:2517,0,1921
chr3	37725580	rs4282019	A	C	264.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=0.211;SOR=1.270;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:273,0,127
chr3	37791729	rs1402756	G	A	711.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.43;SOR=5.892;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr3	37818620	rs2276002	A	G	229.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.66;ReadPosRankSum=-1.036e+00;SOR=1.863;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:59:110,0,59
chr3	37818805	rs2276003	G	C	1646.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.213e+00;DB;DP=45;ExcessHet=1.5490;FS=2.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=1.81;SOR=0.357;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,30:45:99:822,0,477
chr3	37953083	rs13079669	T	A	275.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=13;ExcessHet=3.9794;FS=3.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.64;ReadPosRankSum=0.420;SOR=1.578;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:91:91,0,227
chr3	38010708	rs7372209	T	C	3588.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.888;DB;DP=54;ExcessHet=3.9794;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=1.12;SOR=0.961;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1909,162,0
chr3	38052725	rs933135	C	T	860.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.080e-01;DB;DP=72;ExcessHet=3.0103;FS=0.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=-2.480e-01;SOR=0.915;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:869,0,992
chr3	38058484	rs58677846	G	C	427.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=0.967;SOR=0.941;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:81,0,32
chr3	38087024	rs36046028	C	T	934.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;DB;DP=94;ExcessHet=3.0103;FS=0.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.052e+00;SOR=0.581;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,39:94:99:943,0,1419
chr3	38134438	rs11129778	A	G	5322.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.15;SOR=2.093;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1559,141,0
chr3	38156325	rs2073712	G	A	610.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=13;ExcessHet=1.5490;FS=5.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=1.10;SOR=2.833;VQSLOD=18.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:89:89,0,272
chr3	38170810	rs156265	C	G	3454.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=129;ExcessHet=3.9794;FS=4.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=2.10;SOR=0.505;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,70:129:99:1840,0,1561
chr3	38257567	.	C	CT	225.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;DP=69;ExcessHet=3.9794;FS=0.643;MQ=60.00;MQRankSum=0.00;QD=1.67;ReadPosRankSum=-3.300e-01;SOR=0.600;VQSLOD=5.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,16:69:99:172,0,969
chr3	38348686	rs753330	T	G	3791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.34;DB;DP=125;ExcessHet=3.9794;FS=4.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.028;SOR=0.960;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,58:125:99:1478,0,1646
chr3	38348949	rs818823	G	T	3427.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.918e+00;DB;DP=51;ExcessHet=3.9794;FS=5.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=0.878;SOR=1.092;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,21:51:99:662,0,1095
chr3	38350479	rs818819	T	C	9421.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.880e-01;DB;DP=125;ExcessHet=3.0103;FS=0.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=-3.980e-01;SOR=0.621;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3924,375,0
chr3	38350519	rs818818	G	A	11539.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.31;DB;DP=152;ExcessHet=3.0103;FS=2.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=0.515;SOR=0.916;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4663,454,0
chr3	38350543	rs818817	A	G	12875.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.667e+00;DB;DP=174;ExcessHet=3.0103;FS=1.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=-3.710e-01;SOR=0.865;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5279,521,0
chr3	38350630	rs704929	C	A	12204.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=164;ExcessHet=3.0103;FS=1.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-3.700e-01;SOR=0.563;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,163:164:99:5162,481,0
chr3	38354390	rs695939	A	G	1119.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.310e-01;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-7.900e-01;SOR=0.575;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:463,0,402
chr3	38355176	.	T	TGTGTGTGTGTGTGTGCGCGCGC,TGTGTGCGTGTGCGCGC	2823.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.986;DP=20;ExcessHet=3.9794;FS=0.755;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=1.24;SOR=0.583;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,9,11:20:99:1144,592,548,424,0,369
chr3	38355509	rs696253	C	T	482.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.739;SOR=0.495;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,9:21:99:0|1:38355509_C_T:214,0,376:38355509
chr3	38355615	rs696254	T	C	455.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=3.767;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr3	38356868	rs194705	T	C	453.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910e-01;DB;DP=12;ExcessHet=6.9897;FS=6.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=0.079;SOR=0.046;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:189,0,177
chr3	38357010	rs41285123	A	T	842.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.003e+00;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-1.424e+00;SOR=0.655;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,32:65:99:851,0,1005
chr3	38359993	rs3216085	T	TA	160.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.70;SOR=1.329;VQSLOD=5.85;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:58,6,0
chr3	38390020	rs2615631	C	A	11059.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=1.121;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3049,293,0
chr3	38390273	rs78758634	T	C	379.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=-1.230e-01;SOR=1.473;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:388,0,139
chr3	38397358	rs75649550	A	G	1738.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994e+00;DB;DP=145;ExcessHet=3.0103;FS=0.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.991;SOR=0.804;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,71:145:99:1747,0,1918
chr3	38401677	rs818851	C	T	4247.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113e+00;DB;DP=62;ExcessHet=3.0103;FS=0.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.162;SOR=0.575;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,31:62:99:867,0,873
chr3	38401839	rs818850	T	C	9629.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=0.966;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3175,315,0
chr3	38401918	rs818849	A	G	4262.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=40;ExcessHet=3.0103;FS=0.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=-1.400e-02;SOR=0.582;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,17:40:99:411,0,586
chr3	38402007	rs818848	T	A	1527.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.96;ReadPosRankSum=0.908;SOR=0.527;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:97:97,0,256
chr3	38402027	rs861767	G	A	1299.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.18;SOR=5.549;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr3	38406440	rs1069097	T	C	1253.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=-1.834e+00;SOR=3.675;VQSLOD=15.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,145
chr3	38406478	rs704941	A	G	1623.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.32;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=-5.670e-01;SOR=1.498;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:171,0,389
chr3	38406648	rs704942	T	C	8627.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=119;ExcessHet=3.0103;FS=2.503;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=-2.550e-01;SOR=0.831;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,62:119:99:1485,0,1333
chr3	38406773	rs704943	G	T	7134.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.970e-01;DB;DP=78;ExcessHet=3.0103;FS=4.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=0.015;SOR=0.420;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,42:78:99:1040,0,877
chr3	38406793	rs2234608	T	G	6351.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.911;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.11;ReadPosRankSum=0.896;SOR=0.707;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:852,0,731
chr3	38408107	rs847879	T	C	529.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.15;ReadPosRankSum=0.00;SOR=0.990;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,138
chr3	38408248	rs704946	G	A	3245.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=-2.540e-01;SOR=0.769;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:428,0,531
chr3	38408361	rs843890	G	A	5145.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040e-01;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.50;ReadPosRankSum=0.362;SOR=0.643;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,39:72:99:936,0,763
chr3	38408459	rs2234617	A	G	2123.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=0.952;SOR=1.347;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:444,0,218
chr3	38408536	rs1093684	G	A	698.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.21;ReadPosRankSum=-5.240e-01;SOR=4.294;VQSLOD=13.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:30:0|1:38408536_G_A:154,0,30:38408536
chr3	38408560	rs1104096	A	T	544.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.79;ReadPosRankSum=-1.036e+00;SOR=2.985;VQSLOD=19.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:73:0|1:38408536_G_A:116,0,73:38408536
chr3	38409600	rs704947	T	G	6057.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.89;DB;DP=64;ExcessHet=3.0103;FS=5.675;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=0.574;SOR=1.180;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,23:64:99:697,0,1058
chr3	38411377	rs818832	G	A	922.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.96;ReadPosRankSum=0.328;SOR=3.258;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:96:96,0,158
chr3	38411731	rs10648883	G	GCACACACACACA	1638.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597e+00;DB;DP=18;ExcessHet=3.0103;FS=18.123;MQ=59.94;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=-5.300e-02;SOR=4.325;VQSLOD=0.407;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,3:18:78:78,0,1017
chr3	38417345	rs196378	G	C	349.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.91;ReadPosRankSum=1.15;SOR=1.802;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:112,0,33
chr3	38417367	rs169046	T	C	500.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.14;SOR=3.611;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	38417842	rs116059325	C	T	112.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=1.83;SOR=1.329;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:58:121,0,58
chr3	38438372	rs1858740	T	C	611.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.863e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.59;ReadPosRankSum=-4.440e-01;SOR=2.531;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:336,0,134
chr3	38442490	rs2070488	G	A	1901.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.720e-01;DB;DP=52;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-5.040e-01;SOR=0.709;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:520,0,619
chr3	38496065	rs3749386	C	T	586.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=0.366;SOR=2.200;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:24:156,0,24
chr3	38519424	rs2070489	A	G	7408.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=132;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-1.316e+00;SOR=0.722;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,61:132:99:1577,0,1788
chr3	38521001	rs28619020	C	T	619.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=31;ExcessHet=3.0103;FS=5.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=0.278;SOR=0.191;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:628,0,480
chr3	38521156	rs13097628	T	C	8864.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DB;DP=230;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=0.116;SOR=0.702;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,102:230:99:2713,0,3302
chr3	38521425	rs4407366	C	T	3039.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.943e+00;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=1.30;SOR=0.524;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:609,0,530
chr3	38523495	rs4679053	G	T	2822.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=65;ExcessHet=1.5490;FS=0.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-9.510e-01;SOR=0.599;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,29:65:99:760,0,990
chr3	38524742	rs1046048	C	T	3629.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.430;DB;DP=84;ExcessHet=1.5490;FS=0.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=0.107;SOR=0.728;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,43:84:99:998,0,946
chr3	38538466	rs1984312	G	T	2324.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290e+00;DB;DP=48;ExcessHet=1.5490;FS=4.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=-6.070e-01;SOR=1.402;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,18:48:99:506,0,907
chr3	38539098	.	T	C	385.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.65;MQRankSum=-1.208e+00;QD=13.28;ReadPosRankSum=-2.820e-01;SOR=0.446;VQSLOD=-8.173e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,11:29:99:0|1:38539095_CTT_C:394,0,706:38539095
chr3	38540264	rs6779704	A	T	2562.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=72;ExcessHet=3.9794;FS=4.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.051;SOR=0.961;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,36:72:99:900,0,1007
chr3	38540541	rs2300668	A	G	3227.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.919e+00;DB;DP=52;ExcessHet=1.5490;FS=11.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=0.132;SOR=0.084;VQSLOD=17.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,32:52:99:916,0,599
chr3	38541318	rs2300669	C	A	885.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e-01;DB;DP=39;ExcessHet=3.9794;FS=1.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=1.99;SOR=0.914;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:349,0,554
chr3	38541452	rs9877282	A	G	658.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=0.241;SOR=1.426;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:105,0,180
chr3	38545349	rs6599206	C	T	1127.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DB;DP=11;ExcessHet=1.5490;FS=7.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.48;ReadPosRankSum=0.087;SOR=2.992;VQSLOD=17.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:175,0,155
chr3	38583263	rs55787218	C	T	682.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=64;ExcessHet=3.0103;FS=1.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-1.081e+00;SOR=0.926;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,27:64:99:691,0,981
chr3	38592406	rs1805126	A	G	7263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.686;DB;DP=219;ExcessHet=3.9794;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.959;SOR=0.752;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,111:219:99:2931,0,2568
chr3	38593128	rs34532982	T	TGG	626.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.320e-01;DB;DP=36;ExcessHet=6.9897;FS=0.742;MQ=59.58;MQRankSum=0.00;QD=6.08;ReadPosRankSum=0.231;SOR=0.573;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,6:36:99:156,0,804
chr3	38597058	rs41315501	G	A	202.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=3.9794;FS=5.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.77;ReadPosRankSum=1.61;SOR=0.030;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:178,0,157
chr3	38597558	rs7645178	A	G	519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=0.345;SOR=0.412;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:95:118,0,95
chr3	38597867	rs41315507	C	T	685.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.15;MQRankSum=0.900;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=1.63;SOR=0.646;VQSLOD=0.693;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:368,0,304
chr3	38598399	rs45505695	G	A	107.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=0.319;SOR=0.916;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:115,0,28
chr3	38598956	rs6804918	A	G	494.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=7;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=-4.440e-01;SOR=1.402;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:97:149,0,97
chr3	38599037	rs6793245	G	A	219.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.840e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=-4.840e-01;SOR=1.402;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	38601556	rs6799868	T	C	1613.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114e+00;DB;DP=39;ExcessHet=6.9897;FS=7.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-3.650e-01;SOR=1.691;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:580,0,631
chr3	38621237	rs41312411	C	G	320.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=11;ExcessHet=3.9794;FS=9.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.18;SOR=0.039;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:91:188,0,91
chr3	38622467	rs7430407	T	C	23021.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e-01;DB;DP=267;ExcessHet=3.0103;FS=0.740;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=0.274;SOR=0.764;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,130:267:99:3241,0,3494
chr3	38627153	rs144423561	G	GGTGTGTGTGTGTGTGTGTGTGTGT,GGTGTGTGTGTGTGTGTGTGTGTGTGTGT	3239.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.97;QD=30.51;SOR=8.909;VQSLOD=5.70;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,11,6:21:99:883,261,209,507,0,478
chr3	38627629	rs7645173	A	G	5946.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.88;SOR=3.427;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2198,154,0
chr3	38627633	rs200989283	GC	G	852.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.813e+00;DB;DP=46;ExcessHet=3.0103;FS=6.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=0.124;SOR=0.125;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,28:46:99:861,0,503
chr3	38627658	rs112524625	T	TC,TCC	1497.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.141e+00;DB;DP=26;ExcessHet=3.0103;FS=2.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=0.726;SOR=0.352;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,19,7:26:99:755,199,121,494,0,467
chr3	38647780	rs6770569	G	C	813.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.229;DB;DP=11;ExcessHet=3.9794;FS=1.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=0.632;SOR=0.411;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:95:95,0,225
chr3	38648062	rs6599222	C	T	1906.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=24;ExcessHet=3.9794;FS=5.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=-4.110e-01;SOR=0.148;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:264,0,587
chr3	38649924	rs9873213	T	C	1338.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=2.649;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:359,30,0
chr3	38655643	rs9856587	C	T	848.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.890;DB;DP=26;ExcessHet=3.9794;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=1.02;SOR=1.121;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:399,0,279
chr3	38674712	rs6599230	T	C	5751.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.092e+00;DB;DP=88;ExcessHet=3.0103;FS=0.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=-4.440e-01;SOR=0.595;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2593,263,0
chr3	38738717	rs6599240	G	A	755.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.057e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.23;ReadPosRankSum=0.464;SOR=2.584;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:233,18,0
chr3	38739574	rs6599241	T	C	14100.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.49;SOR=1.106;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4914,467,0
chr3	38739845	rs6599242	A	G	23926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=260;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.07;SOR=0.737;VQSLOD=4.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,260:260:99:8003,778,0
chr3	38749026	rs6599248	T	A	2335.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.760e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.16;ReadPosRankSum=-4.820e-01;SOR=0.728;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1008,101,0
chr3	38812650	rs10212338	G	A	1576.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=33;ExcessHet=6.9897;FS=3.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-1.810e-01;SOR=0.333;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:446,0,477
chr3	38812708	rs4420804	C	T	3162.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DB;DP=66;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=-2.820e-01;SOR=0.676;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,38:66:99:968,0,731
chr3	38835589	rs111558766	C	T	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.081e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=0.640;SOR=0.990;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:396,0,296
chr3	38938299	rs5848481	C	CT	2099.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=41;ExcessHet=6.9897;FS=2.459;MQ=59.78;MQRankSum=-4.180e-01;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=0.461;SOR=1.246;VQSLOD=1.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,29:41:75:647,0,75
chr3	38938845	rs4484137	T	C	697.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.18;SOR=4.407;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:221,18,0
chr3	38945560	rs4073113	A	G	4157.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.44;DB;DP=80;ExcessHet=1.5490;FS=8.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=1.92;SOR=0.278;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2554,240,0
chr3	38946872	rs4514993	A	T	4018.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.30;DB;DP=39;ExcessHet=3.0103;FS=0.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=0.623;SOR=0.932;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1251,117,0
chr3	38949363	rs6599267	A	C	3594.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.61;DB;DP=49;ExcessHet=3.0103;FS=3.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=1.27;SOR=1.176;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1479,137,0
chr3	38951753	rs7429404	T	C	567.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.157;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.37;ReadPosRankSum=-1.570e-01;SOR=2.833;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:166,15,0
chr3	38961537	rs6779297	T	C	2265.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.334;DB;DP=23;ExcessHet=3.0103;FS=6.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=-9.360e-01;SOR=1.697;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:712,69,0
chr3	38961659	rs6599269	T	C	400.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=5;ExcessHet=3.0103;FS=2.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:219,15,0
chr3	38967103	rs4676474	C	T	933.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.004e+00;DB;DP=15;ExcessHet=1.5490;FS=2.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=-7.730e-01;SOR=0.250;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:561,45,0
chr3	38967195	rs4676583	C	G	698.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.44;SOR=5.784;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr3	39149092	rs6786764	A	G	25734.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=218;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.08;SOR=0.939;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,218:218:99:7028,653,0
chr3	39166355	rs784509	G	A	1151.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.89;SOR=6.804;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:670,51,0
chr3	39166484	rs784508	C	T	4616.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.100e-01;DB;DP=74;ExcessHet=0.4576;FS=2.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.20;ReadPosRankSum=1.45;SOR=0.262;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2328,222,0
chr3	39166509	rs784507	A	G	5288.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.760e-01;DB;DP=84;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.22;ReadPosRankSum=0.686;SOR=0.307;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2522,251,0
chr3	39166743	rs2669852	T	C	2927.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=0.941;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:826,60,0
chr3	39167905	rs784506	G	A	4834.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=1.880;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1934,168,0
chr3	39167966	.	T	TAC,TACAC	499.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.175e+00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.55;MQRankSum=0.00;QD=19.20;ReadPosRankSum=0.998;SOR=1.220;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,4:6:36:234,109,88,51,0,36
chr3	39169693	rs1298712	A	G	2125.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=2.584;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1079,96,0
chr3	39169712	rs1274969	T	C	2562.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=2.055;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1256,117,0
chr3	39170090	rs1274968	C	T	1001.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.42;SOR=0.770;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:480,36,0
chr3	39174418	rs112707705	A	G	74.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.16;SOR=2.303;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr3	39174437	rs35628459	T	A	425.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.24;SOR=4.615;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:15:1|1:39174437_T_A:220,15,0:39174437
chr3	39174438	rs11381961	G	GA	425.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.41;SOR=4.804;VQSLOD=6.66;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:39174437_T_A:220,15,0:39174437
chr3	39174462	rs784491	T	C	773.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.46;SOR=5.994;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:331,24,0
chr3	39175576	rs784492	G	T	3788.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.06;SOR=4.385;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1538,120,0
chr3	39176106	rs784493	C	T	1011.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.43;SOR=5.211;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:487,39,0
chr3	39178238	rs784494	A	C	1039.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=3.180;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:424,33,0
chr3	39178899	rs784495	C	T	11124.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=1.189;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4928,441,0
chr3	39179536	rs784496	A	G	337.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=0.693;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr3	39179909	rs784497	G	A	6582.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=33.25;SOR=0.776;VQSLOD=4.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2546,227,0
chr3	39180099	rs784498	T	C	9887.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=0.873;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4454,435,0
chr3	39180162	rs811969	A	C	10080.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=0.798;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4633,447,0
chr3	39180263	rs704959	G	A	6921.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=1.152;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3012,288,0
chr3	39184353	rs704960	C	T	1852.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.11;SOR=2.880;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:731,54,0
chr3	39184959	rs1274958	C	T	8641.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=1.494;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4268,389,0
chr3	39185077	rs1274957	G	A	13250.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=201;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.40;ReadPosRankSum=0.923;SOR=0.971;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,199:201:99:6079,567,0
chr3	39185248	rs784519	A	G	9607.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=1.204;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4325,378,0
chr3	39185968	rs810743	A	G	5148.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=1.194;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2314,222,0
chr3	39186038	rs784518	C	G	2659.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.05;SOR=1.911;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1115,99,0
chr3	39186728	rs784517	C	T	6086.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.439e+00;DB;DP=59;ExcessHet=3.0103;FS=0.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=-3.980e-01;SOR=0.830;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1994,177,0
chr3	39188351	rs1105163	C	T	208.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.80;SOR=3.912;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr3	39229900	rs6805248	T	C	11778.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=0.950;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:4103,380,0
chr3	39308292	rs375617992	TA	T	39.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353e+00;DB;DP=19;ExcessHet=3.0103;FS=4.135;MQ=60.00;MQRankSum=0.00;QD=2.07;ReadPosRankSum=1.10;SOR=0.069;VQSLOD=4.78;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,4:19:48:48,0,334
chr3	39308293	rs4271863	A	T,*	1085.96	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.065e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.71;ReadPosRankSum=0.071;SOR=0.880;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,15,4:19:48:716,109,48,390,0,334
chr3	39323163	rs11715522	A	C	5288.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=53;ExcessHet=3.0103;FS=6.500;MQ=60.00;MQRankSum=8.66;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=0.398;SOR=0.318;VQSLOD=-2.292e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1734,159,0
chr3	39431081	rs2270770	G	A	6560.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e+00;DB;DP=65;ExcessHet=3.0103;FS=5.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=0.086;SOR=0.855;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,35:65:99:882,0,766
chr3	39433147	rs1995236	G	A	14643.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.25;SOR=1.222;VQSLOD=5.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4969,470,0
chr3	39437665	rs11712093	C	T	89.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:98:98,0,111
chr3	39437714	rs73058289	A	T	121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.02;ReadPosRankSum=1.49;SOR=0.330;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:130,0,228
chr3	39437800	rs9877539	A	G	6552.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=1.239;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1850,183,0
chr3	39448051	rs11717439	C	G	132.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:140,0,184
chr3	39448065	rs28624718	C	A	128.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.86;ReadPosRankSum=0.608;SOR=0.412;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:137,0,228
chr3	39448419	rs3772145	C	T	3585.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=263;ExcessHet=3.0103;FS=0.457;MQ=60.00;MQRankSum=0.00;QD=13.63;ReadPosRankSum=0.524;SOR=0.730;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:125,138:263:99:3594,0,3106
chr3	39448581	rs3772143	T	G	2357.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.250e-01;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.43;ReadPosRankSum=0.416;SOR=0.776;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,74:75:99:2374,186,0
chr3	39448620	rs11706951	T	C	511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=45;ExcessHet=3.0103;FS=3.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=-9.040e-01;SOR=1.445;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,18:45:99:520,0,749
chr3	39449137	rs1803893	T	C	1175.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=52.04;POSITIVE_TRAIN_SITE;QD=33.57;SOR=2.964;VQSLOD=3.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1192,105,0
chr3	39449810	rs3772139	A	C	1164.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=6.736;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr3	39452129	rs2077799	G	T	9288.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.490e-01;DB;DP=85;ExcessHet=3.0103;FS=5.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.90;ReadPosRankSum=0.663;SOR=1.102;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,36:85:99:898,0,1311
chr3	39453057	rs2269349	C	T	6799.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=86;ExcessHet=3.0103;FS=2.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=-3.240e-01;SOR=0.527;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1172,0,1111
chr3	39541386	rs1708057	T	C	326.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=1.69;SOR=0.712;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:335,0,678
chr3	39541478	rs1768241	A	G	1000.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=106;ExcessHet=3.0103;FS=1.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=0.292;SOR=0.860;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,44:106:99:1009,0,1524
chr3	39541550	rs1708059	A	G	1151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=118;ExcessHet=3.0103;FS=0.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.276;SOR=0.800;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,49:118:99:1160,0,1581
chr3	39541713	rs1768242	T	A	56.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.03;ReadPosRankSum=-2.100e+00;SOR=0.368;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:65:65,0,174
chr3	39543427	rs2175722	G	T	50.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-1.645e+00;SOR=0.446;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:59:59,0,119
chr3	39543487	rs1612165	A	T	101.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=0.189;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:110,0,102
chr3	39544600	rs112624081	A	G	75.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.38;ReadPosRankSum=0.142;SOR=0.693;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:84:84,0,331
chr3	39554946	rs552724	C	T	867.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-02;DB;DP=52;ExcessHet=3.0103;FS=4.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=-1.194e+00;SOR=1.594;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,31:52:99:876,0,516
chr3	39555497	rs816491	T	G	303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-2.900e-01;SOR=1.112;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:312,0,479
chr3	39555580	rs864643	A	G	82.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:91,0,64
chr3	40085298	rs6599076	T	G	2981.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=3.098;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:44:545,44,0
chr3	40085653	rs143603346	G	A	1489.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=125;ExcessHet=3.0103;FS=2.320;MQ=60.00;MQRankSum=0.00;QD=11.91;ReadPosRankSum=-7.240e-01;SOR=0.974;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,60:125:99:1498,0,1612
chr3	40204178	rs1714414	T	C	3762.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.907;DB;DP=51;ExcessHet=3.0103;FS=1.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=1.42;SOR=0.911;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1651,153,0
chr3	40204392	rs186696494	T	C	407.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=53;ExcessHet=3.0103;FS=2.555;MQ=60.00;MQRankSum=0.00;QD=7.68;ReadPosRankSum=-1.983e+00;SOR=1.098;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,17:53:99:416,0,900
chr3	40231883	rs1317317	C	T	19709.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=199;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=1.119;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,199:199:99:6096,590,0
chr3	40232294	rs1631549	G	C	991.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=3.528;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:254,21,0
chr3	40251282	rs2679798	G	A	5393.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.170e-01;DB;DP=94;ExcessHet=3.9794;FS=5.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=0.922;SOR=0.993;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,93:94:99:3061,272,0
chr3	40251392	rs1799418	T	C	6522.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;DB;DP=122;ExcessHet=3.9794;FS=1.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.554;SOR=0.587;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,121:122:99:3582,325,0
chr3	40251628	rs1799419	G	A	941.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.46;ReadPosRankSum=0.786;SOR=0.776;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:449,33,0
chr3	40286017	rs4618168	T	C	4325.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.350e-01;DB;DP=109;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-9.200e-01;SOR=0.696;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,64:109:99:1625,0,1084
chr3	40291669	rs9845831	T	C	907.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670e-01;DB;DP=37;ExcessHet=3.9794;FS=2.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.299;SOR=0.425;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:513,0,448
chr3	40291877	rs9826171	C	T	1385.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=65;ExcessHet=3.9794;FS=3.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-1.440e-01;SOR=0.981;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,22:65:99:545,0,1118
chr3	40299478	rs111884854	C	A	656.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=-5.650e-01;SOR=0.487;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,23:31:99:665,0,193
chr3	40351140	rs5004340	C	G	989.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=4.174;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr3	40351277	rs11541150	C	T	479.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.69;ReadPosRankSum=-1.134e+00;SOR=0.876;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,15:35:99:488,0,649
chr3	40352355	rs35523102	AT	A	1148.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.220e-01;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.63;ReadPosRankSum=-2.590e-01;SOR=0.826;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,17:28:99:318,0,186
chr3	40352640	rs1454490	A	G	1336.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=6.932;VQSLOD=23.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:249,18,0
chr3	40352884	rs1454492	C	T	996.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.793e+00;DB;DP=12;ExcessHet=6.9897;FS=9.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=-1.108e+00;SOR=0.042;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:211,0,166
chr3	40353259	rs1470937	T	G	12036.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=1.096;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2789,249,0
chr3	40353425	rs34544743	CAG	C	4881.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DB;DP=69;ExcessHet=6.9897;FS=3.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=-2.000e-01;SOR=0.502;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,39:69:99:1547,0,1159
chr3	40429338	rs12493020	T	G	786.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.25;SOR=5.892;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr3	40429358	rs2305522	A	G	790.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.95;ReadPosRankSum=1.22;SOR=2.925;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:262,18,0
chr3	40429434	rs17078798	T	C	507.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=33;ExcessHet=3.0103;FS=3.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.991;SOR=1.650;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:516,0,375
chr3	40433783	rs60991656	G	A	578.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=1.03;SOR=0.665;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,22:34:99:587,0,318
chr3	40433834	rs72861685	T	C	381.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=20;ExcessHet=3.0103;FS=4.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.06;ReadPosRankSum=-5.020e-01;SOR=1.942;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:390,0,159
chr3	40435890	rs72861689	A	G	2933.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.135;DB;DP=54;ExcessHet=1.5490;FS=0.958;MQ=60.00;MQRankSum=0.00;QD=26.92;ReadPosRankSum=0.518;SOR=0.859;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,54:54:99:1|1:40435890_A_G:2119,162,0:40435890
chr3	40435900	rs72861690	A	G	704.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e+00;DB;DP=63;ExcessHet=3.0103;FS=3.890;MQ=60.00;MQRankSum=0.00;QD=11.18;ReadPosRankSum=-1.169e+00;SOR=1.249;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,28:63:99:0|1:40435890_A_G:713,0,998:40435890
chr3	40442280	rs9875245	G	T	828.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.11;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=0.892;SOR=0.260;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:324,0,368
chr3	40442574	rs112091498	AGAGGTCC	A	971.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.370e-01;DB;DP=18;ExcessHet=3.9794;FS=1.310;MQ=60.00;MQRankSum=0.00;QD=16.46;ReadPosRankSum=0.635;SOR=1.050;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:396,0,685
chr3	40453024	rs4973994	T	C	66.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=2.303;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	40457038	rs7648952	T	C	450	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.180e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.14;ReadPosRankSum=0.00;SOR=2.985;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:281,21,0
chr3	40457084	rs9822909	C	A	582.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=1.65;SOR=1.022;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,9:10:5:342,0,5
chr3	40457421	rs144633113	G	A	1670.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=153;ExcessHet=3.0103;FS=1.287;MQ=60.00;MQRankSum=0.00;QD=10.92;ReadPosRankSum=2.22;SOR=0.587;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,69:153:99:1679,0,2123
chr3	40468406	rs6599102	G	A	325.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=-9.670e-01;SOR=3.258;VQSLOD=18.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:272,21,0
chr3	40468896	rs1047855	C	T	3030.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=142;ExcessHet=3.9794;FS=1.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=1.75;SOR=0.654;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,54:142:99:1277,0,2415
chr3	40469254	rs6773917	G	T	1304.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.453e+00;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=1.39;SOR=0.693;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:906,78,0
chr3	40498720	rs17524303	TACGC	T	1953.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.61;ReadPosRankSum=-9.380e-01;SOR=0.770;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:390,0,507
chr3	40498826	rs201258614	C	T	1044.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409e+00;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.43;ReadPosRankSum=-1.723e+00;SOR=0.798;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,42:84:99:1053,0,1173
chr3	40498933	rs4973904	A	G	9860.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.20;SOR=1.026;VQSLOD=4.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2844,278,0
chr3	40500051	rs41485644	G	A	452.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.90;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=0.124;SOR=0.963;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:461,0,290
chr3	40503506	rs148931839	C	T	868.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.271;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=57.07;MQRankSum=-2.135e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.68;ReadPosRankSum=0.872;SOR=0.656;VQSLOD=-1.128e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,41:113:99:877,0,1758
chr3	40503825	.	T	TTGA	231.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DP=10;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;QD=23.13;ReadPosRankSum=-1.080e-01;SOR=0.039;VQSLOD=4.42;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,145
chr3	40505886	rs11129881	C	G	2416.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.83;SOR=2.973;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:703,60,0
chr3	40519429	rs4553952	T	C	3883.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=2.324;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1303,108,0
chr3	40519532	rs4128740	C	A	1466.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.840e-01;DB;DP=88;ExcessHet=3.9794;FS=2.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.280;SOR=0.644;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,36:88:99:729,0,1226
chr3	40519717	rs77372220	G	A	123.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-01;DB;DP=10;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=2.35;SOR=2.303;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:132,0,193
chr3	40528191	rs59042901	C	CA	45.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=15.22;SOR=2.833;VQSLOD=1.08;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:59,9,0
chr3	40528816	rs74898403	A	G	662.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=52;ExcessHet=3.0103;FS=8.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-1.223e+00;SOR=1.931;VQSLOD=19.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,22:52:99:671,0,895
chr3	40529117	rs150749021	T	C	819.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.600e-01;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.644;SOR=0.737;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,33:72:99:828,0,1032
chr3	40550509	rs58291588	TTCTTCAA	T	365.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.49;ReadPosRankSum=-4.140e-01;SOR=1.981;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:40550509_TTCTTCAA_T:180,12,0:40550509
chr3	40550517	rs56798075	GCAATGTACTATCTTAA	G	368.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.930e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.69;ReadPosRankSum=-7.030e-01;SOR=1.981;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:40550509_TTCTTCAA_T:180,12,0:40550509
chr3	40552916	rs6790578	T	C	4329.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.114;DB;DP=86;ExcessHet=1.5490;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=0.647;SOR=1.072;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2817,258,0
chr3	40557307	.	GT	G	300.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.35;ReadPosRankSum=1.11;SOR=0.746;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:25:99:192,0,332
chr3	40557309	.	GTGA	G,GGA	1552.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.433e+00;DP=25;ExcessHet=1.5490;FS=1.103;MQ=60.00;MQRankSum=0.00;QD=22.19;ReadPosRankSum=1.28;SOR=1.044;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,8,15:25:99:1749,473,332,328,0,192
chr3	40557311	rs56754874	GA	*,G	557.88	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.116e+00;DB;DP=25;ExcessHet=1.5490;FS=1.103;MQ=60.00;MQRankSum=0.00;QD=7.75;ReadPosRankSum=1.15;SOR=1.044;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,10,15:25:99:1811,472,331,390,0,253
chr3	41274764	rs2691680	C	A	1360.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.32;SOR=5.670;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:539,39,0
chr3	41277040	rs11564465	C	T	1006.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.624e+00;DB;DP=33;ExcessHet=6.9897;FS=1.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.830;SOR=0.418;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,9:33:99:198,0,755
chr3	41279440	rs4135385	A	G	992.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=26;ExcessHet=3.9794;FS=1.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-3.660e-01;SOR=0.934;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,6:26:99:102,0,616
chr3	41291081	rs2293304	G	A	3885.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.263e+00;DB;DP=96;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=1.03;SOR=0.714;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,46:96:99:995,0,1274
chr3	41496752	rs2270605	A	C	321.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=4.407;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr3	41497165	rs9841301	G	A	1825.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=48;ExcessHet=1.5490;FS=8.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=-7.280e-01;SOR=1.777;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,21:48:99:641,0,770
chr3	41504866	rs2291758	A	G	143.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.967;SOR=0.941;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:76,0,29
chr3	41607388	rs6786299	T	C	1255.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.160e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=1.70;SOR=1.358;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:174,0,130
chr3	41607701	rs1565957	C	G	4007.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=27;ExcessHet=3.0103;FS=3.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.25;ReadPosRankSum=-1.208e+00;SOR=2.407;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:970,81,0
chr3	41841716	rs4973986	A	C	3457.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.060e-01;DB;DP=34;ExcessHet=3.0103;FS=1.797;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.335;SOR=0.972;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1061,101,0
chr3	41923513	rs59960840	GA	G	2320.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.706;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.49;ReadPosRankSum=0.867;SOR=1.276;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:54:1|1:41923513_GA_G:786,54,0:41923513
chr3	41923515	rs61575884	GGCCA	G	2317.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.605;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.36;ReadPosRankSum=0.463;SOR=0.877;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:41923513_GA_G:786,54,0:41923513
chr3	41923872	rs1716994	T	C	1532.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.31;SOR=7.276;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:628,45,0
chr3	41925260	rs113374533	CAGAGAAAAAACAAGTGA	C	1708.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.330e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.70;ReadPosRankSum=0.219;SOR=1.127;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:495,33,0
chr3	41925301	rs1716685	T	C	2141.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.719e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=1.03;SOR=0.453;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:798,63,0
chr3	41925398	rs1052501	C	T	5403.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.850e-01;DB;DP=70;ExcessHet=3.0103;FS=1.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=0.838;SOR=0.881;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1970,209,0
chr3	41925423	rs1716687	T	C	7618.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=0.785;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2096,213,0
chr3	41937000	rs1717003	C	T	1982.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.320e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=-7.100e-01;SOR=0.870;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:431,39,0
chr3	41938500	rs1717005	G	C	1705.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.80;ReadPosRankSum=-4.350e-01;SOR=0.849;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:471,48,0
chr3	41939993	rs1625226	T	A	2919.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=0.795;VQSLOD=19.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:753,78,0
chr3	41942199	rs1717007	T	C	11384.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.58;DB;DP=135;ExcessHet=3.0103;FS=2.468;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=-6.500e-01;SOR=0.995;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4087,404,0
chr3	41949129	rs1716665	C	T	514.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=5.283;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr3	41952781	rs1716991	C	T	4895.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=1.901;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1347,122,0
chr3	41953332	rs1716681	C	T	584.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=2.584;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr3	41957466	rs1716698	T	G	3194.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.710e-01;DB;DP=45;ExcessHet=3.0103;FS=3.001;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=1.32;SOR=0.499;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1296,135,0
chr3	41960006	rs1716975	T	C	3897.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=49;ExcessHet=3.0103;FS=1.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.70;ReadPosRankSum=-1.082e+00;SOR=0.438;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1553,147,0
chr3	41977214	rs3934103	C	T	2056.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.18;ReadPosRankSum=-1.558e+00;SOR=0.673;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:699,57,0
chr3	41977488	rs58069203	CCT	C	5768.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.811e+00;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.76;ReadPosRankSum=-4.240e-01;SOR=0.620;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,54:55:99:2339,117,0
chr3	41978431	rs62257273	C	T	396.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.65;SOR=4.804;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	41996136	rs2272007	T	C	12303.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.110e-01;DB;DP=161;ExcessHet=3.0103;FS=0.846;MQ=59.98;MQRankSum=1.17;POSITIVE_TRAIN_SITE;QD=27.53;ReadPosRankSum=-9.950e-01;SOR=0.586;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5019,483,0
chr3	41996275	rs7651623	A	G	8478.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=1.609;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2833,266,0
chr3	42133149	rs4974011	C	G	4201.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=99;ExcessHet=1.5490;FS=0.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=0.452;SOR=0.617;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,49:99:99:1276,0,1234
chr3	42201759	rs9755034	G	A	471.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.45;SOR=5.136;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:488,36,0
chr3	42202050	rs11370773	G	GT	198.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.740e-01;DB;DP=23;ExcessHet=3.0103;FS=5.643;MQ=60.00;MQRankSum=0.00;QD=12.39;ReadPosRankSum=-1.005e+00;SOR=0.100;VQSLOD=4.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:23:98:207,0,98
chr3	42202055	rs9311304	G	T	797.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.790e-01;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.69;ReadPosRankSum=0.064;SOR=0.776;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:25:99:1382,99,0
chr3	42202061	rs4974003	G	T	2648.11	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.43;ReadPosRankSum=0.531;SOR=0.898;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:99:1424,99,0
chr3	42226151	rs4234445	T	C	5997.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.490e-01;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=-3.500e-02;SOR=0.785;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2361,225,0
chr3	42229296	rs1463194	G	A	1192.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.628e+00;DB;DP=5;ExcessHet=3.0103;FS=2.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=0.978;SOR=0.276;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr3	42233387	rs68023368	A	ATTTTT	427.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.72;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=-3.380e-01;SOR=1.358;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,0:5:18:42,0,18
chr3	42235280	rs146523477	TATCTTAGGAAGTG	T	3383.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.26;SOR=1.704;VQSLOD=4.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,76:76:99:3400,229,0
chr3	42236415	rs9851455	A	G	11095.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=134;ExcessHet=3.0103;FS=0.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=-4.550e-01;SOR=0.563;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4230,402,0
chr3	42242776	rs7609884	T	C	790.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.59;ReadPosRankSum=0.601;SOR=3.258;VQSLOD=18.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
chr3	42244321	rs9311309	G	A	14146.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.659;DB;DP=188;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=1.41;SOR=0.691;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,188:188:99:5618,562,0
chr3	42251263	rs2290134	C	T	8640.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.697;DB;DP=76;ExcessHet=3.0103;FS=0.727;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=-8.350e-01;SOR=0.815;VQSLOD=6.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2814,228,0
chr3	42251577	rs10546421	CGGA	C	16957.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.408e+00;DB;DP=172;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=1.83;SOR=0.644;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,169:172:99:7313,471,0
chr3	42251895	.	TAAA	T,TAA	895.99	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.800e-02;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=0.057;SOR=0.795;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,11,3:22:35:454,35,82,284,0,266
chr3	42264393	rs3733053	A	G	1974.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=2.194;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1991,189,0
chr3	42264422	rs3733054	T	C	2742.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=1.911;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2759,248,0
chr3	42265270	rs3836498	TCTC	T	3740.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=2.168;VQSLOD=5.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3757,256,0
chr3	42265369	rs3774391	C	T	1632.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=0.883;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1649,131,0
chr3	42265634	rs1043610	C	T	2072.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.89;SOR=1.802;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2089,189,0
chr3	42299865	rs111921938	TG	T	224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.590e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=-9.560e-01;SOR=1.085;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,8:22:99:0|1:42299865_TG_T:233,0,554:42299865
chr3	42299870	rs8192472	C	T	717.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=21;ExcessHet=3.9794;FS=3.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=1.38;SOR=0.241;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,13:21:99:1|0:42299865_TG_T:451,0,297:42299865
chr3	42304609	rs2278794	A	G	1789.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.96;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=2.49;SOR=1.194;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:880,63,0
chr3	42304784	rs1868522	A	G	13804.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=223;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=0.344;SOR=0.697;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,223:223:99:7089,668,0
chr3	42305131	rs754635	C	G	5425.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.70;DB;DP=70;ExcessHet=3.0103;FS=4.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=-4.840e-01;SOR=0.355;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2396,210,0
chr3	42438754	rs13054	T	C	4417.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.807e+00;DB;DP=109;ExcessHet=1.5490;FS=8.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.609;SOR=0.326;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3309,327,0
chr3	42445679	rs40416	C	A	1249.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=2.494;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1266,111,0
chr3	42448296	rs33518	T	C	8057.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=184;ExcessHet=1.5490;FS=0.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=-8.980e-01;SOR=0.727;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,184:184:99:5681,552,0
chr3	42555524	rs2278215	G	A	1131.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=26;ExcessHet=6.9897;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-7.300e-02;SOR=0.881;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:317,0,407
chr3	42560882	rs28684623	T	A	726.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.676e+00;DB;DP=88;ExcessHet=3.0103;FS=0.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=0.797;SOR=0.869;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,35:88:99:735,0,1465
chr3	42567729	rs2239500	C	T	284.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=-6.770e-01;SOR=0.818;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:293,0,264
chr3	42568700	rs2276829	C	G	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.47;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=0.620;SOR=0.941;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:351,0,235
chr3	42568929	rs2229722	T	C	2725.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DB;DP=174;ExcessHet=3.0103;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.397;SOR=0.644;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,105:174:99:2734,0,1525
chr3	42569069	rs2276831	C	A	2333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=41;ExcessHet=6.9897;FS=3.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=0.026;SOR=0.277;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:568,0,735
chr3	42569108	rs2276832	T	C	492.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=-6.180e-01;SOR=0.859;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:501,0,306
chr3	42577053	rs115609872	G	A	289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770e+00;DB;DP=25;ExcessHet=3.0103;FS=2.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-2.190e-01;SOR=0.239;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:298,0,481
chr3	42577207	rs168207	A	G	409.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.9794;FS=2.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=0.842;SOR=0.112;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:207,18,0
chr3	42595115	rs3774398	C	T	551.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.105;SOR=0.719;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:560,0,424
chr3	42597217	rs6441892	A	C	66.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.28;ReadPosRankSum=-2.720e-01;SOR=0.223;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:75:75,0,99
chr3	42599049	.	T	TA	298.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DP=33;ExcessHet=3.9794;FS=4.422;MQ=60.00;MQRankSum=0.00;QD=4.67;ReadPosRankSum=0.981;SOR=1.234;VQSLOD=4.91;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,4:33:7:7,0,548
chr3	42599091	rs2271184	G	A	602.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DB;DP=49;ExcessHet=3.0103;FS=2.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-1.694e+00;SOR=1.110;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,26:49:99:611,0,497
chr3	42599234	rs2271185	C	T	369.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.401;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.268e+00;SOR=0.602;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:378,0,385
chr3	42605402	rs9311324	A	C	672.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.940e-01;DB;DP=60;ExcessHet=3.0103;FS=2.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-4.140e-01;SOR=1.165;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,30:60:99:681,0,765
chr3	42610374	rs2271186	A	G	508.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180e-01;DB;DP=41;ExcessHet=3.0103;FS=4.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=-2.610e-01;SOR=0.230;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:517,0,531
chr3	42610515	rs2271187	G	A	291.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640e-01;DB;DP=38;ExcessHet=3.0103;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=-1.093e+00;SOR=1.061;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,13:38:99:300,0,690
chr3	42636141	rs4549	G	A	56.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,109
chr3	42660330	rs1474531	G	T	392.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=4.977;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr3	42660489	rs10712209	CT	C	560.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-02;DB;DP=31;ExcessHet=6.9897;FS=2.630;MQ=59.94;MQRankSum=0.00;QD=6.76;ReadPosRankSum=-4.370e-01;SOR=0.448;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,5:31:50:50,0,380
chr3	42700456	rs339724	C	T	1511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=113;ExcessHet=3.0103;FS=0.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.268;SOR=0.838;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,53:113:99:1520,0,1749
chr3	42700630	rs339723	A	G	983.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100e-02;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=1.20;SOR=0.730;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,42:99:99:992,0,1440
chr3	42728144	rs6805421	A	G	4951.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.84;DB;DP=85;ExcessHet=3.9794;FS=5.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.167;SOR=1.013;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2794,255,0
chr3	42733174	rs61163642	G	C	1110.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=0.622;SOR=1.775;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:163,0,221
chr3	42733341	rs4533620	T	C	2173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=191;ExcessHet=3.0103;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-3.910e-01;SOR=0.744;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,91:191:99:2182,0,2335
chr3	42733468	rs123509	T	C	9068.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.239e+00;DB;DP=110;ExcessHet=3.0103;FS=3.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.74;ReadPosRankSum=0.511;SOR=0.910;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3313,330,0
chr3	42733667	rs3846062	A	C	746.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.71;ReadPosRankSum=-7.780e-01;SOR=0.693;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr3	42735054	rs150364023	G	GC	169.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DB;DP=32;ExcessHet=3.0103;FS=2.188;MQ=60.00;MQRankSum=0.00;QD=5.29;ReadPosRankSum=0.126;SOR=0.230;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,9:32:99:178,0,606
chr3	42735150	rs11079	T	C	10875.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.976e+00;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=-8.430e-01;SOR=0.660;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4356,426,0
chr3	42735274	rs339697	A	G	7407.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.211e+00;DB;DP=85;ExcessHet=3.0103;FS=9.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=-1.160e-01;SOR=0.279;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2774,255,0
chr3	42738297	rs2290973	G	A	3700.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.669e+00;DB;DP=50;ExcessHet=3.9794;FS=4.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=-4.160e-01;SOR=0.412;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,31:50:99:829,0,548
chr3	42740025	rs34722222	GA	G	799.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=19;ExcessHet=3.9794;FS=1.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=0.810;SOR=1.179;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,12:19:99:428,0,210
chr3	42741512	rs339687	G	C	380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.32;ReadPosRankSum=0.135;SOR=0.693;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:143,0,135
chr3	42741852	rs113288672	CTG	C	130.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.61;SOR=3.258;VQSLOD=5.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr3	42741936	.	CTG	C,CTGTG	754.67	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.05;DP=16;ExcessHet=1.5490;FS=5.228;MQ=60.00;MQRankSum=0.00;QD=26.02;ReadPosRankSum=1.45;SOR=2.215;VQSLOD=4.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,8,8:16:99:493,277,312,257,0,301
chr3	42750324	rs2240861	G	A	385.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=0.524;SOR=0.387;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:104,0,70
chr3	42754505	rs11713172	C	T	860.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=1.12;SOR=0.590;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:293,0,392
chr3	42754912	rs3895740	A	G	1293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=52;ExcessHet=3.9794;FS=3.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-3.410e-01;SOR=1.088;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:681,0,747
chr3	42772180	rs10865921	C	T	1945.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.88;DB;DP=78;ExcessHet=3.9794;FS=2.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-4.460e-01;SOR=0.896;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,36:78:99:934,0,1042
chr3	42774475	rs17074778	G	A	2605.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=97;ExcessHet=3.9794;FS=0.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.852;SOR=0.633;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,44:97:99:1098,0,1286
chr3	42781276	rs62246603	G	T	1973.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DB;DP=84;ExcessHet=3.9794;FS=2.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.371;SOR=0.529;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,33:84:99:710,0,1274
chr3	42781316	rs11709500	G	A	1464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=1.35;SOR=0.629;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,19:56:99:471,0,971
chr3	42784216	rs12054446	A	G	262.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=5;ExcessHet=3.9794;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=0.253;SOR=2.419;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:162,0,29
chr3	42784630	rs12635736	A	G	1939.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.780e-01;DB;DP=80;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-9.950e-01;SOR=0.744;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,29:80:99:749,0,1498
chr3	42787469	rs2240859	A	G	1078.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=53;ExcessHet=3.9794;FS=0.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.270;SOR=0.798;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:587,0,706
chr3	42788492	rs113782187	G	A	99.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:108,0,72
chr3	42788511	rs339683	G	T	516.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=-2.720e-01;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:142,15,0
chr3	42791123	rs339682	A	G	1047.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=0.120;SOR=1.675;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:457,36,0
chr3	42793216	rs183690143	C	G	192.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.48;ReadPosRankSum=-1.068e+00;SOR=1.609;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:60:201,0,60
chr3	42793337	rs11929390	T	C	1230.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=33;ExcessHet=3.9794;FS=7.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=1.05;SOR=2.200;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:571,0,396
chr3	42794333	rs55904344	G	C	1217.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.920e-01;DB;DP=31;ExcessHet=3.9794;FS=0.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.238;SOR=0.944;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:400,0,552
chr3	42799554	.	TAC	T,TACACACAC	2437.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.166e+00;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.63;MQRankSum=-6.740e-01;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=-2.160e-01;SOR=0.614;VQSLOD=1.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,10,11:28:99:935,656,673,314,0,358
chr3	42799765	rs17238798	G	A	5464.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=102;ExcessHet=1.5490;FS=1.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=1.01;SOR=0.860;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1141,0,1268
chr3	42799858	rs339678	T	A	6239.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=1.855;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2037,177,0
chr3	42835889	rs6764909	A	G	2885.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.655;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=-9.930e-01;SOR=0.843;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:965,87,0
chr3	42917047	rs9865715	A	G	16065.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.65;SOR=0.701;VQSLOD=4.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5075,482,0
chr3	42947776	rs6789928	T	C	1024.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=2.833;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:215,18,0
chr3	42954912	rs11129987	C	T	2036.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.600e-01;DB;DP=27;ExcessHet=3.0103;FS=3.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=-9.990e-01;SOR=1.479;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:963,81,0
chr3	42955598	rs11129988	G	T	621.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.60;ReadPosRankSum=0.464;SOR=2.200;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr3	42956273	rs1427801	T	C	7392.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.910e-01;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.76;ReadPosRankSum=1.16;SOR=0.254;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,74:75:99:2410,187,0
chr3	42956984	rs834579	A	G	1302.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.000e-02;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.28;ReadPosRankSum=0.169;SOR=3.003;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr3	43073761	rs658958	G	A	6445.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=133;ExcessHet=6.9897;FS=0.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=-4.890e-01;SOR=0.769;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,70:133:99:1738,0,1458
chr3	43074430	rs2948619	A	G	5795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800e-02;DB;DP=96;ExcessHet=6.9897;FS=3.032;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.618;SOR=0.803;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,50:96:99:0|1:43074430_A_G:1945,0,2825:43074430
chr3	43074434	rs2936817	C	T	5839.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.173e+00;DB;DP=94;ExcessHet=6.9897;FS=2.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=0.225;SOR=0.796;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,49:94:99:0|1:43074430_A_G:1945,0,2825:43074430
chr3	43074871	rs588335	A	G	20436.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=0.831;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,220:220:99:6711,659,0
chr3	43094888	rs534284	G	C	2431.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.44;SOR=6.869;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:776,60,0
chr3	43095101	rs536119	A	G	12282.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=249;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=-2.460e-01;SOR=0.683;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:131,118:249:99:2951,0,3488
chr3	43095245	rs2280565	A	G	4680.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.940e-01;DB;DP=193;ExcessHet=3.9794;FS=0.538;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.556;SOR=0.750;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,93:193:99:2445,0,2813
chr3	43097502	rs3732856	C	T	945.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.730e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=0.544;SOR=0.660;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:55:267,0,55
chr3	43097710	rs664628	A	G	7140.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.752;DB;DP=162;ExcessHet=6.9897;FS=1.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.369;SOR=0.833;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,78:162:99:1831,0,1927
chr3	43121559	rs604033	C	T	15309.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=243;ExcessHet=3.9794;FS=0.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=1.09;SOR=0.768;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,124:243:99:2911,0,3096
chr3	43122966	rs2936818	G	A	7487.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-02;DB;DP=127;ExcessHet=3.9794;FS=3.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=1.23;SOR=0.887;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,69:127:99:1731,0,1330
chr3	43345484	rs181262806	A	G	61.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:70,0,33
chr3	43384540	rs35861772	C	CTTA	1328.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.77;SOR=6.666;VQSLOD=5.09;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:12:172,12,0
chr3	43414318	rs6441771	A	G	6173.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=0.927;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1827,185,0
chr3	43591142	rs12638282	G	A	1775.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.621e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=-3.540e-01;SOR=0.995;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,15:22:99:440,0,200
chr3	43592906	rs9829081	T	C	3999.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.075e+00;DB;DP=51;ExcessHet=3.9794;FS=10.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=-7.200e-02;SOR=0.193;VQSLOD=18.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:739,0,690
chr3	43602803	rs3772165	C	T	2738.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=1.04;SOR=0.663;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:504,0,546
chr3	43607136	rs7616708	T	C	1471.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=25;ExcessHet=3.9794;FS=0.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=0.525;SOR=0.844;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:289,0,390
chr3	43618980	rs9883169	T	G	1255.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.63;ReadPosRankSum=0.709;SOR=0.941;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:43618980_T_G:234,0,390:43618980
chr3	43618981	rs9863479	G	C	1255.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.05;ReadPosRankSum=0.263;SOR=1.132;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,6:11:99:0|1:43618980_T_G:234,0,390:43618980
chr3	43732371	rs74845403	A	G	692.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=1.21;SOR=0.487;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:701,0,366
chr3	43753078	rs17075899	A	G	205.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-5.640e-01;SOR=0.473;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:214,0,293
chr3	43756577	rs72433688	C	CTG,CTGTGTGTG	2665.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.126;DB;DP=38;ExcessHet=3.0103;FS=3.316;MQ=59.65;MQRankSum=-3.270e-01;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=0.415;SOR=0.258;VQSLOD=0.841;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:7,17,14:38:99:809,349,478,258,0,821
chr3	43760062	rs887472	T	G	967.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=82;ExcessHet=3.0103;FS=0.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=1.47;SOR=0.835;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,39:82:99:976,0,1031
chr3	43760305	rs34226283	C	A	65.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:74,0,33
chr3	44283525	rs9850927	A	G	980.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.716e+00;DB;DP=9;ExcessHet=3.0103;FS=2.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=0.516;SOR=0.209;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:290,27,0
chr3	44283672	rs9833423	T	C	5197.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.19;DB;DP=71;ExcessHet=3.0103;FS=3.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.414;SOR=1.043;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2341,213,0
chr3	44283808	rs7645375	C	A	7343.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.04;DB;DP=101;ExcessHet=3.0103;FS=6.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=3.15;SOR=0.507;VQSLOD=21.56;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3386,303,0
chr3	44284584	rs9284879	G	A	1481.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DB;DP=54;ExcessHet=3.9794;FS=4.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-1.342e+00;SOR=0.659;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:629,0,799
chr3	44296403	rs4682960	T	C	1491.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=55;ExcessHet=3.9794;FS=2.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-5.720e-01;SOR=0.464;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,23:55:99:514,0,884
chr3	44297948	rs7639827	A	G	442.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-3.810e-01;SOR=0.518;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:143,0,227
chr3	44310592	rs5004668	T	C	1344.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.275e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=0.620;SOR=0.473;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:369,30,0
chr3	44312447	rs11130024	T	A	930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=-5.170e-01;SOR=0.773;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:134,0,212
chr3	44329394	rs11294162	TG	T	1749.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.761;SOR=0.677;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,35:71:99:870,0,904
chr3	44332176	rs1488637	T	C	3410.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.076e+00;DB;DP=34;ExcessHet=3.0103;FS=0.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=0.569;SOR=0.548;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1145,102,0
chr3	44345646	rs1488639	A	T	1433.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=37;ExcessHet=6.9897;FS=4.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-4.010e-01;SOR=0.368;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:480,0,466
chr3	44345688	rs186846562	A	G	533.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-2.670e-01;SOR=0.566;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:251,0,359
chr3	44348123	rs7630980	A	G	178.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.77;ReadPosRankSum=1.15;SOR=2.303;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	44362408	rs9857957	G	A	1645.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.556e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.05;ReadPosRankSum=-9.780e-01;SOR=1.981;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:403,33,0
chr3	44364825	rs75579151	T	C	843.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=-8.120e-01;SOR=1.040;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:51:280,0,51
chr3	44399668	rs4682970	T	C	5194.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=66;ExcessHet=3.9794;FS=0.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=0.716;SOR=0.633;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,45:66:99:1358,0,512
chr3	44408864	rs372993721	G	GT	1674.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-01;DB;DP=30;ExcessHet=3.9794;FS=2.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=0.974;SOR=0.334;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,21:30:99:572,0,214
chr3	44434311	rs11716955	G	A	854.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-01;DB;DP=29;ExcessHet=3.9794;FS=0.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=1.81;SOR=0.559;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,9:29:99:215,0,550
chr3	44437870	rs6441838	A	C	14593.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.78;ReadPosRankSum=0.940;SOR=0.787;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4501,465,0
chr3	44489880	rs11710965	T	C	3053.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=87;ExcessHet=3.9794;FS=3.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-5.220e-01;SOR=0.909;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,36:87:99:1049,0,1243
chr3	44540791	rs36046723	TTC	T	16962.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.66;SOR=0.745;VQSLOD=6.02;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,125:125:99:5401,376,0
chr3	44544162	.	T	C	290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.61;ReadPosRankSum=1.40;SOR=0.425;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:299,0,398
chr3	44607013	rs13081859	T	C	7069.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e-01;DB;DP=189;ExcessHet=6.9897;FS=1.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.776;SOR=0.642;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,88:189:99:2167,0,2563
chr3	44609626	rs6765468	G	A	2252.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950e-01;DB;DP=52;ExcessHet=6.9897;FS=4.670;MQ=54.23;MQRankSum=0.378;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-2.930e-01;SOR=1.175;VQSLOD=-4.062e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:769,0,807
chr3	44611233	rs11718098	C	A	1430.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.705e+00;DB;DP=12;ExcessHet=6.9897;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=-2.110e-01;SOR=1.903;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:157,0,254
chr3	44611896	rs9835485	A	G	6109.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=173;ExcessHet=6.9897;FS=1.762;MQ=54.21;MQRankSum=-2.316e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.124;SOR=0.853;VQSLOD=-1.308e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,87:173:99:2305,0,1993
chr3	44612050	rs9873604	C	T	5959.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DB;DP=118;ExcessHet=3.9794;FS=8.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=1.00;SOR=0.529;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,57:118:99:1650,0,1665
chr3	44612895	rs2034476	C	G	3552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=93;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.512;SOR=0.686;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,36:93:99:881,0,1369
chr3	44613014	rs2034475	G	T	1119.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.656e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-2.780e-01;SOR=0.708;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:111,0,487
chr3	44635181	.	CAAA	C	162.73	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.62;SOR=3.258;VQSLOD=4.80;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr3	44671217	rs6769283	G	T	407.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=7;ExcessHet=6.9897;FS=7.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-7.120e-01;SOR=0.041;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:44671217_G_T:69,0,388:44671217
chr3	44671230	rs6769288	G	A	325.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=6.9897;FS=4.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.135;SOR=0.086;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:44671217_G_T:69,0,388:44671217
chr3	44672900	rs186466071	T	C	114.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=30.61;SOR=1.179;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr3	44673317	rs62244180	C	T	700.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.14;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:179,15,0
chr3	44673430	rs28699350	G	C	958.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.937e+00;DB;DP=19;ExcessHet=6.9897;FS=1.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=0.613;SOR=0.390;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:311,0,246
chr3	44761729	rs17076938	A	G	650.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.382;SOR=0.846;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,25:48:99:659,0,580
chr3	44762112	rs6441866	T	C	1755.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.68;SOR=7.614;VQSLOD=24.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:458,33,0
chr3	44775962	rs4682752	A	G	989.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.800e-02;DB;DP=58;ExcessHet=3.9794;FS=0.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=1.63;SOR=0.613;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,15:58:99:306,0,1127
chr3	44794881	rs112645395	A	C	1294.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DB;DP=78;ExcessHet=3.0103;FS=2.001;MQ=48.70;MQRankSum=-6.320e-01;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.846;SOR=0.435;VQSLOD=-1.298e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,51:78:99:1303,0,611
chr3	44795238	rs4682993	G	T	142.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.46;ReadPosRankSum=-1.282e+00;SOR=0.693;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:151,0,26
chr3	44796049	rs3749199	G	C	299.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:75,0,69
chr3	44803108	rs3082548	AAAGACAG	A	7916.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=284;ExcessHet=3.9794;FS=1.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.828;SOR=0.791;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:166,118:284:99:4459,0,8223
chr3	44803130	rs4682994	G	A	2914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.389e+00;DB;DP=279;ExcessHet=3.0103;FS=0.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-5.770e-01;SOR=0.740;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:157,122:279:99:2923,0,4140
chr3	44816952	rs10574346	CTT	C	855.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DB;DP=17;ExcessHet=3.9794;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=0.930;SOR=1.075;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,10:17:99:314,0,201
chr3	44819436	rs4682996	T	C	260.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=-3.130e-01;SOR=0.976;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:269,0,164
chr3	44819565	rs4682753	T	G	1221.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-2.890e-01;SOR=0.767;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,47:92:99:1230,0,988
chr3	44826315	rs56895721	G	GT	735.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.580e-01;DB;DP=27;ExcessHet=3.9794;FS=2.195;MQ=59.75;MQRankSum=0.00;QD=11.14;ReadPosRankSum=1.06;SOR=1.092;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:340,0,258
chr3	44827793	rs7642843	T	C	703.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=0.114;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:168,0,282
chr3	44835498	rs1965379	G	A	181.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=1.5490;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=1.28;SOR=0.269;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:58:111,0,58
chr3	44835573	rs1463950	A	G	468.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=-7.730e-01;SOR=0.627;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:226,0,167
chr3	44836099	rs140855457	A	G	57.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,70
chr3	44840612	rs5848711	A	AT	212.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DB;DP=11;ExcessHet=3.9794;FS=4.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.49;ReadPosRankSum=0.156;SOR=0.048;VQSLOD=6.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:154,0,192
chr3	44846477	.	GA	G	299.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DP=46;ExcessHet=6.9897;FS=0.864;MQ=60.00;MQRankSum=0.00;QD=2.83;ReadPosRankSum=0.847;SOR=0.541;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,10:46:99:162,0,655
chr3	44846722	rs80059929	T	A	151.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=15;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-3.680e-01;SOR=1.609;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:160,0,312
chr3	44869026	rs4682999	A	T	3006.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=1.718;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1043,90,0
chr3	44871505	rs11710339	A	T	1401.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.313;SOR=0.699;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,37:64:99:839,0,705
chr3	44881909	rs76526953	A	G	767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=70;ExcessHet=3.0103;FS=3.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.509;SOR=1.101;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,31:70:99:776,0,936
chr3	44893953	rs375038429	TA	T	71.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.91;ReadPosRankSum=1.13;SOR=1.981;VQSLOD=4.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:61:80,0,61
chr3	44903349	rs2292180	G	C	276.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DB;DP=40;ExcessHet=3.0103;FS=2.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=-3.610e-01;SOR=1.292;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,13:40:99:285,0,685
chr3	44903434	rs2292181	G	C	659.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=-1.797e+00;SOR=0.713;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,29:66:99:668,0,995
chr3	44906746	rs10429	A	G	2704.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.480e-01;DB;DP=79;ExcessHet=6.9897;FS=9.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.445;SOR=1.334;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,37:79:99:947,0,1128
chr3	44915250	rs11715636	G	C	1624.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=133;ExcessHet=3.0103;FS=0.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.14;SOR=0.783;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,59:133:99:1633,0,2013
chr3	44916591	rs6441869	G	A	120.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=1.609;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	44926857	rs36081973	C	T	720.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=88;ExcessHet=3.0103;FS=0.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=3.49;SOR=0.532;VQSLOD=21.07;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:54,34:88:99:729,0,1223
chr3	44929287	rs2271087	G	C	1913.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.500e-01;DB;DP=179;ExcessHet=3.0103;FS=0.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=-3.330e-01;SOR=0.723;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,82:179:99:1922,0,2397
chr3	44934888	rs56659361	G	A	181.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=9;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=0.876;SOR=0.160;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:190,0,103
chr3	44938492	.	CTT	C	317.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DP=9;ExcessHet=6.9897;FS=2.633;MQ=59.70;MQRankSum=0.00;QD=9.62;ReadPosRankSum=-2.140e-01;SOR=2.127;VQSLOD=5.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:9:34:34,0,151
chr3	44938586	rs6765789	A	C	593.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=5.421;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	44943069	rs1995640	C	T	3123.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DB;DP=132;ExcessHet=3.9794;FS=5.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.408;SOR=0.461;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,54:132:99:1272,0,2052
chr3	44943104	rs937838	G	C	1356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.950e-01;DB;DP=162;ExcessHet=3.0103;FS=1.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.37;ReadPosRankSum=1.52;SOR=0.575;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,61:162:99:1365,0,2654
chr3	44943389	rs1995641	G	A	2750.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DB;DP=107;ExcessHet=3.9794;FS=1.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=0.361;SOR=0.578;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,47:107:99:1164,0,1538
chr3	44945121	rs1354767	G	A	293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=1.42;SOR=0.465;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:162,0,292
chr3	44948479	rs3749195	C	T	1504.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=60;ExcessHet=3.9794;FS=2.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.556;SOR=0.990;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,24:60:99:657,0,981
chr3	44948590	rs9876921	G	A	3866.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=140;ExcessHet=3.9794;FS=2.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-7.800e-02;SOR=0.867;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,78:140:99:1922,0,1438
chr3	44948770	rs4622937	G	A	1681.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-01;DB;DP=48;ExcessHet=3.9794;FS=1.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=2.08;SOR=0.982;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,32:48:99:899,0,380
chr3	44948802	.	CAAAAA	C	679.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DP=18;ExcessHet=6.9897;FS=0.000;MQ=59.40;MQRankSum=-4.170e-01;QD=15.45;ReadPosRankSum=1.09;SOR=1.057;VQSLOD=0.457;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:18:99:330,0,221
chr3	44952407	rs1520082	G	C	1998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=55;ExcessHet=3.9794;FS=0.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-2.850e-01;SOR=0.608;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,35:55:99:914,0,551
chr3	44952942	rs6777798	A	C	1851.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=62;ExcessHet=3.9794;FS=1.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=2.04;SOR=0.847;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:788,0,949
chr3	44959725	rs140249946	CGG	C	660.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.34;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.46;ReadPosRankSum=0.271;SOR=3.160;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:14:192,14,0
chr3	44974273	rs147521870	AAAAC	A	225.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=-1.540e-01;SOR=0.169;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:234,0,345
chr3	44986836	rs3749189	T	C	845.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=99;ExcessHet=3.0103;FS=2.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.54;ReadPosRankSum=0.648;SOR=0.939;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,37:99:99:854,0,1497
chr3	45017687	.	C	CG	164.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.67;ReadPosRankSum=1.52;SOR=0.425;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,7:17:99:0|1:45017687_C_CG:173,0,233:45017687
chr3	45017782	rs11547235	A	G	1342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=80;ExcessHet=3.0103;FS=6.073;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-1.032e+00;SOR=1.436;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,46:80:99:1351,0,699
chr3	45017904	rs6441873	A	T	3786.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DB;DP=133;ExcessHet=3.9794;FS=0.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.858;SOR=0.739;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:82,51:133:99:0|1:45017904_A_T:1830,0,4402:45017904
chr3	45017905	rs6441874	G	T	3787.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.250e-01;DB;DP=133;ExcessHet=3.9794;FS=0.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.658;SOR=0.750;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:82,51:133:99:0|1:45017904_A_T:1830,0,4402:45017904
chr3	45018048	rs79296608	C	T	312.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.232e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-7.310e-01;SOR=0.336;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:321,0,690
chr3	45030564	rs62242658	T	C	2686.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540e-01;DB;DP=202;ExcessHet=3.0103;FS=1.814;MQ=59.97;MQRankSum=-9.320e-01;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-2.000e-03;SOR=0.837;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:95,107:202:99:2695,0,2280
chr3	45030749	rs7631259	A	G	1733.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.536e+00;DB;DP=122;ExcessHet=3.0103;FS=3.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.781;SOR=0.393;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,66:122:99:1742,0,1594
chr3	45030867	rs147630055	A	AG	460.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=16;ExcessHet=3.9794;FS=5.089;MQ=60.00;MQRankSum=0.00;QD=9.79;ReadPosRankSum=-2.060e-01;SOR=1.629;VQSLOD=4.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:165,0,227
chr3	45047112	rs13314063	T	C	638.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.41;SOR=5.784;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr3	45049186	rs11130040	A	G	1844.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.725e+00;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=-1.018e+00;SOR=0.418;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1325,105,0
chr3	45052775	rs6794	G	C	3492.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.909e+00;DB;DP=59;ExcessHet=1.5490;FS=2.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=2.62;SOR=0.505;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1896,177,0
chr3	45068074	rs2301282	A	G	3031.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=109;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=1.63;SOR=0.679;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,54:109:99:1390,0,1436
chr3	45072535	rs2139538	G	A	435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=0.424;SOR=0.990;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,181
chr3	45072583	rs939309	T	C	247.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.030e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-1.350e-01;SOR=0.818;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:97,12,0
chr3	45076823	rs4683029	A	G	377.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.283e+00;DB;DP=12;ExcessHet=3.9794;FS=4.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=0.628;SOR=2.093;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:151,0,212
chr3	45077123	rs13963	G	A	7941.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728e+00;DB;DP=238;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=1.28;SOR=0.733;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,141:238:99:3795,0,2592
chr3	45077458	rs8318	G	A	1413.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.030e-01;DB;DP=33;ExcessHet=3.9794;FS=1.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=0.602;SOR=0.929;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:480,0,400
chr3	45127515	rs9874077	T	C	11973.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=0.737;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4328,418,0
chr3	45127786	rs17077237	A	G	912.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=18;ExcessHet=6.9897;FS=7.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.838;SOR=1.748;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,5:18:99:112,0,308
chr3	45130725	rs7618923	C	T	97.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=-1.890e-01;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,112
chr3	45134822	rs3749191	T	C	12255.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.340e-01;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=1.00;POSITIVE_TRAIN_SITE;QD=23.84;ReadPosRankSum=0.280;SOR=0.732;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4948,471,0
chr3	45152557	rs6786350	G	A	394.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.15;SOR=1.329;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:41:411,41,0
chr3	45153422	rs6778556	A	G	447.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=5.136;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr3	45187524	rs1863836	A	G	2587.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.97;SOR=5.994;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:666,48,0
chr3	45187671	rs1863837	C	T	20407.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.490e-01;DB;DP=303;ExcessHet=3.0103;FS=0.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=-9.930e-01;SOR=0.592;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,303:303:99:8814,902,0
chr3	45187785	rs2276862	C	G	14450.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=398;ExcessHet=1.5490;FS=0.584;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=1.42;SOR=0.796;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:209,189:398:99:4363,0,4691
chr3	45266555	rs33749	T	C	1440.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=3.556;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:442,39,0
chr3	45267058	rs33750	G	A	1848.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.18;SOR=2.160;VQSLOD=19.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1001,78,0
chr3	45267310	rs41118	C	T	8080.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.110e-01;DB;DP=76;ExcessHet=3.0103;FS=7.212;MQ=60.00;MQRankSum=0.00;QD=33.53;ReadPosRankSum=-1.158e+00;SOR=1.218;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,76:76:99:1|1:45267310_C_T:3284,228,0:45267310
chr3	45267321	rs395917	C	T	7829.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.790e-01;DB;DP=69;ExcessHet=3.0103;FS=8.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.34;ReadPosRankSum=-3.200e-02;SOR=1.325;VQSLOD=19.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,69:69:99:1|1:45267310_C_T:3163,214,0:45267310
chr3	45458751	rs73070309	C	T	547.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DB;DP=17;ExcessHet=3.9794;FS=4.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=2.50;SOR=0.109;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:285,0,216
chr3	45460914	rs854202	T	C	351.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.43;SOR=4.615;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:282,21,0
chr3	45461102	rs11383389	G	GT	3050.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.470e-01;DB;DP=57;ExcessHet=1.5490;FS=0.789;MQ=59.96;MQRankSum=-9.280e-01;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=0.246;SOR=0.588;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2021,171,0
chr3	45500174	rs745551	C	A	4536.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=43;ExcessHet=3.0103;FS=5.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.90;ReadPosRankSum=-2.020e-01;SOR=2.051;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,42:43:99:1313,118,0
chr3	45515648	rs11919039	T	C	4938.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=88;ExcessHet=3.9794;FS=1.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=0.460;SOR=0.623;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,41:88:99:1090,0,1135
chr3	45517759	rs12487705	G	A	1873.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.944e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=1.04;SOR=1.124;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:375,0,172
chr3	45517799	rs3733117	T	C	4741.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=4.804;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1130,84,0
chr3	45527099	rs7640603	C	G	12116.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=1.274;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3713,347,0
chr3	45527218	rs7610357	T	C	12057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.13;SOR=1.185;VQSLOD=4.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4206,393,0
chr3	45527484	rs7612869	T	C	590.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=4.047;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr3	45530401	rs3733116	G	A	4473.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=54;ExcessHet=3.9794;FS=2.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.975;SOR=0.540;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:686,0,817
chr3	45533224	rs2128361	G	A	13624.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=1.293;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4236,406,0
chr3	45537973	rs12638088	C	T	676.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025e+00;DB;DP=28;ExcessHet=3.9794;FS=1.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-1.770e-01;SOR=0.437;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:404,0,449
chr3	45542083	rs2306522	T	C	4006.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=55;ExcessHet=3.9794;FS=7.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.16;ReadPosRankSum=1.17;SOR=1.451;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:802,0,737
chr3	45557707	rs11549809	G	A	2850.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DB;DP=116;ExcessHet=3.9794;FS=3.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-4.140e-01;SOR=0.488;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,57:116:99:1328,0,1404
chr3	45559519	rs2170549	T	C	6716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=1.445;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2019,198,0
chr3	45559621	rs2276860	C	T	560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120e-01;DB;DP=20;ExcessHet=3.9794;FS=10.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=0.850;SOR=0.081;VQSLOD=18.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:347,0,242
chr3	45561487	rs267224	C	T	232.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=0.319;SOR=0.473;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:75,0,30
chr3	45565554	rs267220	A	G	8758.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=31.28;SOR=0.797;VQSLOD=4.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2856,288,0
chr3	45636335	rs267238	A	G	746.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e+00;DB;DP=16;ExcessHet=6.9897;FS=1.078;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-1.254e+00;SOR=0.495;VQSLOD=4.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:189,0,216
chr3	45637253	rs267237	C	T	8979.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230e-01;DB;DP=142;ExcessHet=3.9794;FS=1.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=0.300;SOR=0.849;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,67:142:99:1842,0,2156
chr3	45637439	rs267236	T	C	6795.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.216;DB;DP=127;ExcessHet=3.9794;FS=2.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=0.984;SOR=0.542;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,65:127:99:1654,0,1697
chr3	45637830	rs13086458	A	G	2816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476e+00;DB;DP=80;ExcessHet=3.9794;FS=3.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=1.33;SOR=0.454;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1179,0,1062
chr3	45677398	rs7648681	G	A	57.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=1.28;SOR=0.307;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,150
chr3	45677572	rs142891193	A	G	1232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.265e+00;DB;DP=126;ExcessHet=3.0103;FS=0.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=-3.000e-02;SOR=0.587;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,54:126:99:1241,0,1864
chr3	45677635	rs11379880	C	CT	22767.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.07;SOR=0.889;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,169:169:99:1|1:45677635_C_CT:7719,521,0:45677635
chr3	45677638	rs5848762	CA	C	22835.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.14;SOR=0.868;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,173:173:99:1|1:45677635_C_CT:7753,524,0:45677635
chr3	45677782	rs36136468	G	A	760.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.310;DB;DP=62;ExcessHet=3.0103;FS=1.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=-4.870e-01;SOR=0.416;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:769,0,975
chr3	45677815	rs10662872	G	GAGA	1231.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=33;ExcessHet=3.9794;FS=1.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.278;SOR=1.201;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:33:99:557,0,856
chr3	45715159	rs35737275	CT	C	2324.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.520e-01;DB;DP=22;ExcessHet=3.0103;FS=2.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.72;ReadPosRankSum=-7.010e-01;SOR=0.364;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,6:22:99:140,0,470
chr3	45715688	rs2578679	G	A	3270.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=30;ExcessHet=3.0103;FS=5.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=1.35;SOR=1.813;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:464,0,440
chr3	45715767	rs2742409	G	A	1385.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=69;ExcessHet=3.9794;FS=2.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.973;SOR=0.938;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,33:69:99:717,0,746
chr3	45731082	rs188809579	A	G	653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.373;DB;DP=69;ExcessHet=3.0103;FS=0.959;MQ=60.00;MQRankSum=0.00;QD=9.47;ReadPosRankSum=1.21;SOR=0.928;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,26:69:99:662,0,1178
chr3	45746836	rs1969626	A	G	534.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.085e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-4.640e-01;SOR=2.093;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:134,0,178
chr3	45748429	rs2742441	G	A	8067.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.440e-01;DB;DP=104;ExcessHet=1.5490;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.53;ReadPosRankSum=-5.840e-01;SOR=0.715;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:61,43:104:99:0|1:45748429_G_A:1611,0,3566:45748429
chr3	45748435	rs2673039	A	G	8071.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DB;DP=102;ExcessHet=1.5490;FS=1.180;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=-4.270e-01;SOR=0.577;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,43:102:99:0|1:45748429_G_A:1605,0,3505:45748429
chr3	45748599	rs2742442	T	A	906.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.23;ReadPosRankSum=-7.780e-01;SOR=1.675;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:325,0,158
chr3	45748632	rs2673038	A	G	605.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.89;ReadPosRankSum=0.00;SOR=2.948;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:175,0,99
chr3	45754487	rs2742369	C	A	822.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.48;ReadPosRankSum=-3.610e-01;SOR=1.148;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:245,0,137
chr3	45754685	rs2271619	A	G	1011.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217e+00;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.414e+00;SOR=0.784;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,44:82:99:1020,0,938
chr3	45754749	rs2248991	G	A	2926.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-02;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=0.072;SOR=0.649;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:593,0,622
chr3	45755636	rs6764981	G	C	442.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.645e+00;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=0.338;SOR=0.710;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,25:58:99:451,0,839
chr3	45755730	rs5019353	T	G	1178.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.78;ReadPosRankSum=1.98;SOR=1.378;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:9:30:425,30,0
chr3	45755731	rs200685145	TTG	T	1154.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.840e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.96;ReadPosRankSum=0.652;SOR=2.147;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:9:30:425,30,0
chr3	45761115	rs2064062	G	C	3681.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=0.885;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1605,165,0
chr3	45763635	rs2673062	A	G	3914.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=1.402;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1755,171,0
chr3	45764246	rs2742448	A	G	1695.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=5.283;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:690,51,0
chr3	45764544	rs2742449	T	C	1613.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.34;SOR=3.611;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:743,69,0
chr3	45772742	rs2531755	T	C	1210.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.127e+00;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-2.170e-01;SOR=2.242;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:54:725,54,0
chr3	45772744	rs11708140	C	T	323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=-1.810e-01;SOR=0.646;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:332,0,205
chr3	45772772	rs2673055	G	A	1587.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.698e+00;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=1.60;SOR=0.811;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:838,83,0
chr3	45773320	rs2253979	A	G	243.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=4.174;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:149,12,0
chr3	45773732	rs11709306	G	A	3628.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=0.4576;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.92;SOR=2.509;VQSLOD=4.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1433,125,0
chr3	45776875	rs111484566	C	CT	925.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DB;DP=107;ExcessHet=3.9794;FS=9.435;MQ=60.00;MQRankSum=0.00;QD=4.41;ReadPosRankSum=1.50;SOR=0.358;VQSLOD=2.61;culprit=FS	GT:AD:DP:GQ:PL	0/1:50,46:107:99:881,0,1769
chr3	45776900	rs1468543	A	G	4377.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630e-01;DB;DP=96;ExcessHet=1.5490;FS=0.661;MQ=60.00;MQRankSum=0.00;QD=23.29;ReadPosRankSum=-2.530e-01;SOR=0.795;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1121,0,1832
chr3	45779136	rs1468542	A	T	3829.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=33.60;SOR=1.009;VQSLOD=4.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1692,153,0
chr3	45779943	rs1962800	G	A	567.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.61;SOR=5.549;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:193,15,0
chr3	45781148	rs3733106	C	T	1546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.170e-01;DB;DP=147;ExcessHet=3.0103;FS=1.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.113;SOR=0.840;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,58:147:99:1555,0,2476
chr3	45781188	rs3821890	T	G	1341.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=-7.490e-01;SOR=0.614;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1350,0,1073
chr3	45781380	rs13059502	A	G	298.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.73;SOR=4.407;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	45784963	rs9821974	T	C	862.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DB;DP=21;ExcessHet=1.5490;FS=1.702;MQ=60.00;MQRankSum=0.00;QD=27.84;ReadPosRankSum=0.599;SOR=1.189;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,10:21:99:0|1:45784963_T_C:429,0,843:45784963
chr3	45784972	rs10575376	GGT	G	1031.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=23;ExcessHet=1.5490;FS=4.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=0.523;SOR=1.942;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,11:23:99:0|1:45784963_T_C:426,0,890:45784963
chr3	45799871	rs2251347	C	T	3050.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=1.122;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:834,87,0
chr3	45799933	rs73060335	A	G	280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=24;ExcessHet=3.0103;FS=1.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=1.33;SOR=1.085;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:289,0,327
chr3	45801726	rs7652042	C	T	299.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=9;ExcessHet=3.9794;FS=3.183;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.141;SOR=2.303;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:170,0,99
chr3	45804391	rs2191027	C	T	3185.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-02;DB;DP=114;ExcessHet=3.9794;FS=1.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.68;SOR=0.571;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,54:114:99:1355,0,1508
chr3	45804734	rs6770261	C	T	175.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.179;SOR=0.941;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:94:184,0,94
chr3	45812473	rs2077017	A	G	538.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.91;SOR=5.549;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:139,12,0
chr3	45813025	rs758387	A	G	1690.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.45;SOR=6.091;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1005,72,0
chr3	45814303	rs1468541	T	C	645.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=4.407;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:125,12,0
chr3	45817418	rs758386	A	G	28492.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=307;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=0.816;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,307:307:99:9311,920,0
chr3	45821624	rs2252547	T	C	1937.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-02;DB;DP=79;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-1.325e+00;SOR=0.673;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,40:79:99:969,0,935
chr3	45823534	rs116555562	C	T	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-9.630e-01;SOR=0.836;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:241,0,214
chr3	45977899	rs1873002	T	C	7590.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=1.961;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2205,204,0
chr3	46245824	rs371736049	TA	T	58.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.583;DB;DP=32;ExcessHet=3.9794;FS=2.403;MQ=60.00;MQRankSum=0.00;QD=1.08;ReadPosRankSum=0.310;SOR=1.112;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,5:32:36:36,0,565
chr3	46479668	rs3213479	A	G	463.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=16;ExcessHet=3.9794;FS=1.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.986;SOR=1.068;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:252,0,172
chr3	46480958	rs2073495	C	G	2914.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.368e+00;DB;DP=114;ExcessHet=3.9794;FS=1.670;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.414;SOR=0.580;VQSLOD=6.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,56:114:99:1424,0,1703
chr3	46480994	rs55787894	A	G	2181.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-02;DB;DP=77;ExcessHet=3.9794;FS=1.344;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=1.67;SOR=0.558;VQSLOD=5.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,36:77:99:1020,0,1116
chr3	46482667	rs200253525	A	AGT	230.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.65;SOR=0.818;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:54:54,0,131
chr3	46501284	rs10662431	C	CCTT	7884.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.33;SOR=1.556;VQSLOD=6.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2329,156,0
chr3	46580324	rs7651745	G	A	272.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=4.174;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	46593147	rs1879325	A	G	1590.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=1.46;SOR=0.828;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,5:33:90:90,0,763
chr3	46593241	.	CTTTTTTT	C	271.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=1.65;SOR=1.270;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:85:120,0,85
chr3	46620614	rs11130097	T	C	4413.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=92;ExcessHet=6.9897;FS=4.388;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-3.090e-01;SOR=0.494;VQSLOD=7.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,56:92:99:1249,0,867
chr3	46621123	rs9819070	A	T	3120.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.67;SOR=2.185;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:692,51,0
chr3	46621163	.	G	A	156.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.290e-01;DP=13;ExcessHet=3.0103;FS=9.890;MQ=60.00;MQRankSum=0.00;QD=12.02;ReadPosRankSum=0.707;SOR=1.862;VQSLOD=16.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:165,0,289
chr3	46654132	rs2139637	G	A	7541.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.37;SOR=1.500;VQSLOD=5.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2133,207,0
chr3	46658515	rs11425145	G	GT	906.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=6.804;VQSLOD=6.87;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:413,39,0
chr3	46658737	rs9832679	A	G	10830.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.723e+00;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=0.627;SOR=0.337;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,115:116:99:3391,306,0
chr3	46658872	rs9870935	G	T	2230.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=25;ExcessHet=3.0103;FS=1.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.15;ReadPosRankSum=-5.400e-02;SOR=0.510;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:366,0,415
chr3	46666793	rs9810013	G	A	768.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.346e+00;DB;DP=43;ExcessHet=3.0103;FS=7.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=2.94;SOR=0.166;VQSLOD=21.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:12,31:43:99:777,0,355
chr3	46666953	rs3796367	A	G	167.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=-8.800e-01;SOR=0.892;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:176,0,136
chr3	46713102	rs6776565	C	T	1696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045e+00;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-1.213e+00;SOR=0.653;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,69:135:99:1705,0,1694
chr3	46713457	rs7625303	C	G	7147.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010e-01;DB;DP=178;ExcessHet=1.5490;FS=1.990;MQ=59.99;MQRankSum=0.894;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-4.740e-01;SOR=0.577;VQSLOD=2.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:100,76:178:99:1819,0,2555
chr3	46713764	rs61277784	G	A	1554.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.49;ReadPosRankSum=-3.550e-01;SOR=1.292;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:531,0,212
chr3	46714708	rs12487651	C	G	342.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.10;SOR=2.093;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:354,27,0
chr3	46714797	rs11130103	C	T	521.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.588e+00;DB;DP=33;ExcessHet=3.0103;FS=1.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-2.055e+00;SOR=1.085;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:530,0,518
chr3	46714821	rs11130104	C	G	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.277e+00;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-1.754e+00;SOR=0.892;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:660,0,604
chr3	46715001	rs4682825	C	T	2437.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433e+00;DB;DP=62;ExcessHet=1.5490;FS=1.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=-2.750e-01;SOR=0.471;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,33:62:99:813,0,752
chr3	46717065	rs7635360	C	G	593.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.463e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-2.740e-01;SOR=0.612;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:602,0,517
chr3	46717931	rs6808525	T	C	9085.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.727e+00;DB;DP=91;ExcessHet=3.0103;FS=4.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=0.772;SOR=1.310;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2814,273,0
chr3	46717957	rs9876451	A	G	7653.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.24;SOR=1.402;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2534,228,0
chr3	46718298	rs6806400	A	G	10002.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=34.26;SOR=2.513;VQSLOD=5.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2990,264,0
chr3	46721028	rs9855064	C	T	543.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DB;DP=13;ExcessHet=1.5490;FS=2.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=-1.441e+00;SOR=1.981;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:50:275,0,50
chr3	46722373	rs6792255	C	T	404.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=12;ExcessHet=1.5490;FS=1.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.707;SOR=0.223;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:166,0,222
chr3	46722692	rs13080080	G	T	26730.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.61;DB;DP=279;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=0.673;SOR=1.086;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,277:279:99:8551,813,0
chr3	46723551	rs4683310	G	A	9057.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=207;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=-1.395e+00;SOR=0.689;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,103:207:99:2303,0,2463
chr3	46723663	rs4683311	C	T	5811.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583e+00;DB;DP=113;ExcessHet=1.5490;FS=5.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=-6.260e-01;SOR=1.131;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,51:113:99:1364,0,1805
chr3	46723777	rs56069285	G	A	1110.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.962;DB;DP=20;ExcessHet=1.5490;FS=5.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.23;ReadPosRankSum=-7.030e-01;SOR=3.383;VQSLOD=16.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:468,0,148
chr3	46724548	rs9847395	C	T	559.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=13;ExcessHet=1.5490;FS=2.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=1.05;SOR=1.931;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:162,0,263
chr3	46724569	rs9847407	C	T	745.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.516;SOR=0.657;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:183,0,258
chr3	46724675	.	G	A	966.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.58;ReadPosRankSum=0.736;SOR=0.578;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,34:62:99:975,0,754
chr3	46725110	rs9810659	A	G	1215.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.01;ReadPosRankSum=-2.310e-01;SOR=0.643;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:46725110_A_G:195,0,294:46725110
chr3	46725120	rs9868213	T	G	1386.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=-7.020e-01;SOR=0.653;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,6:11:99:0|1:46725110_A_G:237,0,291:46725110
chr3	46730547	rs10626746	C	CCT	1288.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.94;ReadPosRankSum=-2.040e-01;SOR=3.026;VQSLOD=6.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:150,0,259
chr3	46750553	rs11130106	G	A	4118.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=45;ExcessHet=3.9794;FS=7.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.39;ReadPosRankSum=0.511;SOR=0.327;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:629,0,697
chr3	46751073	rs10578999	TAAG	T	7128.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DB;DP=72;ExcessHet=3.0103;FS=5.284;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.44;ReadPosRankSum=-5.330e-01;SOR=0.513;VQSLOD=6.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,31:72:99:1144,0,1652
chr3	46753577	rs9814780	T	C	370.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.62;SOR=3.258;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:249,18,0
chr3	46933960	rs1001284	C	G	20211.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.911;DB;DP=252;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=0.911;SOR=0.617;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,250:252:99:7363,706,0
chr3	46934292	rs4683300	C	A	744.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=7;ExcessHet=3.0103;FS=8.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=1.04;SOR=5.084;VQSLOD=12.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:299,21,0
chr3	46935681	rs724449	C	T	349.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.07;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr3	46941116	rs2242116	A	G	394.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.33;ReadPosRankSum=-1.036e+00;SOR=1.473;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr3	46943028	rs1531137	T	C	4560.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=-4.420e-01;SOR=0.724;VQSLOD=6.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,49:50:99:1670,108,0
chr3	46944274	rs1138518	T	C	14411.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=164;ExcessHet=3.0103;FS=1.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=0.426;SOR=0.831;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,162:164:99:4918,442,0
chr3	46945263	rs142021243	G	GA	546.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=59.44;QD=27.31;SOR=4.615;VQSLOD=4.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:60:563,60,0
chr3	46963502	rs4587	T	C	4121.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.251e+00;DB;DP=46;ExcessHet=3.0103;FS=1.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.23;ReadPosRankSum=-2.069e+00;SOR=1.344;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1635,138,0
chr3	46963839	rs62248424	G	A	2306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=146;ExcessHet=3.0103;FS=1.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.848;SOR=0.532;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,79:146:99:2315,0,1896
chr3	46965197	rs2290546	C	G	5728.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.20;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.08;ReadPosRankSum=1.69;SOR=0.712;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2015,183,0
chr3	46967040	rs2290545	G	A	9036.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.550e-01;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=-1.731e+00;SOR=0.731;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3463,303,0
chr3	46982365	rs6804732	T	C	5063.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.46;SOR=1.506;VQSLOD=4.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1588,144,0
chr3	46982762	rs4682843	A	G	902.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=4.174;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
chr3	46982774	rs4683293	T	C	951.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.64;SOR=3.258;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:46982774_T_C:180,12,0:46982774
chr3	46982779	rs4682841	G	A	893.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.93;SOR=2.948;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:46982774_T_C:180,12,0:46982774
chr3	47018214	rs936181	T	C	11876.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=0.937;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4054,405,0
chr3	47018447	rs34971711	CA	C	386.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=-1.242e+00;SOR=0.368;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:121,15,0
chr3	47021023	rs13062516	A	G	76.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.66;SOR=1.179;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
chr3	47021124	rs13062681	A	G	573.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.20;ReadPosRankSum=-6.740e-01;SOR=1.179;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:205,18,0
chr3	47029236	rs4478107	A	G	463.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=2.147;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr3	47029661	rs12152493	G	A	8457.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=89;ExcessHet=3.0103;FS=1.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.576;SOR=0.572;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2769,265,0
chr3	47031237	rs4282092	C	G	1720.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.41;SOR=2.303;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:50:582,50,0
chr3	47033937	rs13066214	C	T	6599.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.145e+00;DB;DP=83;ExcessHet=3.0103;FS=7.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.50;ReadPosRankSum=-1.387e+00;SOR=1.352;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2674,247,0
chr3	47035625	rs936185	G	A	10577.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.95;SOR=3.945;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:3130,252,0
chr3	47038135	rs11396344	C	CA	10679.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.52;SOR=1.062;VQSLOD=5.69;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3577,280,0
chr3	47043538	rs2305634	C	T	20605.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=211;ExcessHet=3.0103;FS=0.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=0.180;SOR=0.649;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,209:211:99:7114,583,0
chr3	47044122	rs11928558	A	T	32010.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=339;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.91;SOR=1.273;VQSLOD=5.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,339:339:99:10515,1015,0
chr3	47045739	rs1079276	C	G	31471.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.07;DB;DP=383;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=-1.300e-02;SOR=0.741;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,380:383:99:11964,1090,0
chr3	47045846	rs2305637	C	T	7745.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.789e+00;DB;DP=229;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.82;ReadPosRankSum=1.37;SOR=0.294;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,228:229:99:7762,643,0
chr3	47046485	rs141569354	C	T	2209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=204;ExcessHet=3.0103;FS=2.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-6.300e-02;SOR=0.912;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:114,90:204:99:2218,0,2625
chr3	47046842	rs2305638	G	C	8178.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.129e+00;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.11;ReadPosRankSum=0.696;SOR=0.741;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3061,276,0
chr3	47047176	rs5848810	A	AG	9908.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.045;DB;DP=121;ExcessHet=3.0103;FS=3.143;MQ=60.00;MQRankSum=0.00;QD=25.74;ReadPosRankSum=1.35;SOR=0.515;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3901,373,0
chr3	47050908	rs3214838	AG	A	10032.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.028;DB;DP=129;ExcessHet=3.0103;FS=1.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=0.987;SOR=0.583;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4091,388,0
chr3	47059323	rs2385867	C	T	819.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.42;SOR=4.712;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:178,15,0
chr3	47061183	rs2290547	G	A	1383.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.60;SOR=2.362;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1400,117,0
chr3	47061453	rs10510752	C	T	960.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=77;ExcessHet=3.0103;FS=4.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-8.310e-01;SOR=0.347;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,37:77:99:969,0,1003
chr3	47079112	rs6768722	G	A	7354.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.312;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1891,186,0
chr3	47103861	rs10589946	GTT	G	6725.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.49;SOR=2.225;VQSLOD=5.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2294,190,0
chr3	47125385	rs4082155	G	A	13927.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.65;DB;DP=178;ExcessHet=3.0103;FS=0.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-1.730e-01;SOR=0.574;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,176:178:99:5583,514,0
chr3	47125916	rs5848822	CT	C	1131.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.219;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=0.386;SOR=1.165;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,17:18:30:407,30,0
chr3	47129781	.	CA	C	34.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e-01;DP=21;ExcessHet=3.9794;FS=2.382;MQ=60.00;MQRankSum=0.00;QD=1.07;ReadPosRankSum=0.656;SOR=0.165;VQSLOD=5.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,3:21:22:22,0,437
chr3	47129903	rs12631730	C	T	305.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=4.407;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	47142907	rs60548476	TCC	T	2703.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.691;DB;DP=15;ExcessHet=3.0103;FS=9.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.44;ReadPosRankSum=-6.290e-01;SOR=1.779;VQSLOD=4.89;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,15:15:45:675,45,0
chr3	47143087	rs61571386	AGT	A	1064.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.131;DB;DP=13;ExcessHet=3.0103;FS=5.019;MQ=60.00;MQRankSum=0.00;QD=21.72;ReadPosRankSum=-1.900e-01;SOR=0.144;VQSLOD=5.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:40:383,40,0
chr3	47146932	rs6785790	C	T	489.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.400e-02;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.66;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=-8.200e-01;SOR=1.508;VQSLOD=5.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:212,18,0
chr3	47147076	rs80265220	G	A	468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DB;DP=32;ExcessHet=3.0103;FS=3.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.39;SOR=1.493;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:477,0,326
chr3	47147393	.	CAAA	C,CAA	1948.69	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.788;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.69;MQRankSum=-1.250e-01;QD=19.88;ReadPosRankSum=-4.330e-01;SOR=0.553;VQSLOD=0.596;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,12,8:34:99:686,128,189,455,0,416
chr3	47158011	rs138895831	T	C	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.188;DB;DP=23;ExcessHet=3.0103;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=1.14;SOR=2.461;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:351,0,348
chr3	47161214	rs11923706	T	C	4180.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=1.539;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1272,114,0
chr3	47162661	rs6767907	A	G	16716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=0.877;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5381,530,0
chr3	47168839	rs60754228	T	TA	276.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=7;ExcessHet=6.9897;FS=1.494;MQ=60.00;MQRankSum=0.00;QD=9.23;ReadPosRankSum=0.00;SOR=0.412;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:38:72,0,38
chr3	47187075	rs6442059	C	G	5523.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.68;SOR=0.912;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1442,141,0
chr3	47198826	rs11708451	G	A	2724.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.704e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=-4.150e-01;SOR=1.380;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1106,87,0
chr3	47205502	rs76496241	CGCGGCGGCG	C	2277.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.63;SOR=4.133;VQSLOD=4.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:53:760,53,0
chr3	47276968	rs2276854	C	T	6839.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.211;DB;DP=99;ExcessHet=3.0103;FS=0.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.796;SOR=0.634;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2981,296,0
chr3	47277458	rs1874264	A	G	2443.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.91;SOR=3.675;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1008,90,0
chr3	47277885	rs13094438	G	A	2126.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.502e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.23;ReadPosRankSum=0.045;SOR=0.938;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:723,60,0
chr3	47282303	rs2276853	G	A	3832.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.89;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.26;ReadPosRankSum=0.723;SOR=0.785;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1330,116,0
chr3	47286227	rs6772449	G	T	2090.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=3.037;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:827,69,0
chr3	47287603	rs35871850	A	AT	4238.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.39;SOR=2.108;VQSLOD=4.78;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:47287603_A_AT:1343,99,0:47287603
chr3	47312635	rs142053755	AAAAAAG	A	378.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.38;ReadPosRankSum=0.00;SOR=0.582;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	47316725	rs903538	G	A	1752.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.73;SOR=6.316;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:584,45,0
chr3	47318747	rs924009	T	G	7860.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=31.82;SOR=0.785;VQSLOD=3.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2818,273,0
chr3	47322496	rs807936	C	T	7878.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.713e+00;DB;DP=97;ExcessHet=3.0103;FS=0.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=0.603;SOR=0.640;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3105,291,0
chr3	47375955	rs295449	G	A	2644.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.158e+00;DB;DP=40;ExcessHet=3.0103;FS=0.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=-6.300e-01;SOR=0.523;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1360,120,0
chr3	47376095	rs295450	A	G	7965.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=0.934;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2506,234,0
chr3	47384925	rs295457	G	T	961.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=4.977;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr3	47385585	rs295458	C	A	1298.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.164e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-9.970e-01;SOR=1.106;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:522,48,0
chr3	47437449	rs900693	C	A	241.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.83;SOR=3.912;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr3	47445897	rs10647488	C	CT	748.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=25;ExcessHet=6.9897;FS=2.617;MQ=59.41;MQRankSum=-6.000e-01;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.00;SOR=1.207;VQSLOD=1.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,15:25:99:269,0,120
chr3	47447673	rs13077134	C	G	2412.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.02;SOR=1.270;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:759,63,0
chr3	47449058	rs900688	T	C	20400.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=1.394;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,189:189:99:6651,567,0
chr3	47449580	rs1531874	T	C	3010.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=1.700;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:878,69,0
chr3	47452087	rs900689	G	A	22405.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=242;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=33.19;SOR=0.802;VQSLOD=5.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,242:242:99:7618,726,0
chr3	47452786	rs1531875	G	A	10514.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.183e+00;DB;DP=131;ExcessHet=3.0103;FS=6.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=-2.760e-01;SOR=0.392;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4251,392,0
chr3	47454399	rs6789730	G	A	6502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=31.11;SOR=3.841;VQSLOD=5.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2388,219,0
chr3	47456225	rs6442066	T	C	7187.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=33.34;SOR=0.864;VQSLOD=4.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2117,177,0
chr3	47459679	rs12487736	C	T	16581.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.407;DB;DP=237;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=0.550;SOR=0.667;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,237:237:99:6758,706,0
chr3	47462200	rs900690	T	C	4254.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=1.179;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1455,129,0
chr3	47462587	rs900691	A	G	14397.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=1.550;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4610,426,0
chr3	47464122	rs1038394	A	G	9844.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.730e-01;DB;DP=108;ExcessHet=3.0103;FS=3.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=-3.410e-01;SOR=0.960;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3408,324,0
chr3	47468261	rs11711824	C	T	207.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=2.303;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr3	47484126	rs900692	G	C	699.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=5.892;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr3	47539751	rs2170814	T	C	12429.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=0.857;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3496,318,0
chr3	47539969	rs13059519	C	T	7997.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.515e+00;DB;DP=83;ExcessHet=3.0103;FS=0.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=0.920;SOR=0.796;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2731,249,0
chr3	47543389	rs3816779	G	A	6940.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=104;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=-1.379e+00;SOR=0.728;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3345,311,0
chr3	47555142	rs2291298	C	A	18709.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.041e+00;DB;DP=245;ExcessHet=3.0103;FS=0.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=-7.730e-01;SOR=0.625;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,245:245:99:7325,733,0
chr3	47603926	rs11456803	A	AT	512.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.840e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.00;SOR=2.737;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:305,30,0
chr3	47604086	rs116232180	T	C	213.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.660e-01;DB;DP=27;ExcessHet=3.0103;FS=1.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.90;ReadPosRankSum=0.398;SOR=0.199;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,8:27:99:222,0,617
chr3	47604299	rs4858839	C	T	890.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=58.63;POSITIVE_TRAIN_SITE;QD=33.30;SOR=4.003;VQSLOD=5.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:327,24,0
chr3	47610418	rs77488802	T	C	696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=-6.400e-02;SOR=0.804;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:705,0,511
chr3	47610764	rs181315271	C	T	1030.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DB;DP=81;ExcessHet=3.0103;FS=0.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-1.370e-01;SOR=0.813;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1039,0,921
chr3	47614413	rs2280567	G	A	4549.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.529e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.27;ReadPosRankSum=-1.084e+00;SOR=3.242;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1398,105,0
chr3	47618953	rs3732530	C	A	17108.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.337e+00;DB;DP=211;ExcessHet=3.0103;FS=3.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.51;ReadPosRankSum=0.115;SOR=0.847;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,211:211:99:6945,630,0
chr3	47645933	rs62262079	A	T	2004.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.872e+00;DB;DP=38;ExcessHet=1.5490;FS=5.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=1.56;SOR=0.176;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,26:38:99:583,0,336
chr3	47676902	rs3216712	C	CA	666.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.640e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=0.00;SOR=3.816;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:224,18,0
chr3	47680066	rs12633923	C	T	5137.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=3.467;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1732,135,0
chr3	47680119	rs12636863	T	C	7303.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.35;DB;DP=102;ExcessHet=3.0103;FS=1.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.465;SOR=0.559;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3062,305,0
chr3	47704222	rs9840859	G	T	1632.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.32;SOR=4.664;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:397,33,0
chr3	47712202	rs1141601	T	C	1149.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DB;DP=59;ExcessHet=3.9794;FS=3.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.890;SOR=0.442;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,25:59:99:432,0,763
chr3	47722034	rs34432748	C	CTT	92.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.16;MQRankSum=0.00;QD=23.19;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:18:77,0,18
chr3	47751998	rs2047558	T	C	1098.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.03;SOR=6.593;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:334,24,0
chr3	47762030	rs12495204	A	G	1298.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.882e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=0.832;SOR=1.123;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:448,36,0
chr3	47770380	rs6442081	G	A	1845.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.318;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.38;ReadPosRankSum=0.350;SOR=1.058;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:325,24,0
chr3	47777774	rs4858825	C	A	548.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=1.63;SOR=0.495;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:269,0,222
chr3	47882727	rs17290490	C	T	2306.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=12;ExcessHet=3.0103;FS=1.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.14;ReadPosRankSum=-1.770e-01;SOR=1.075;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:428,36,0
chr3	47912703	rs17729010	G	A	1181.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-9.670e-01;SOR=0.619;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,47:106:99:1190,0,1604
chr3	47917626	rs10598765	C	T	111.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.70;NEGATIVE_TRAIN_SITE;QD=12.36;SOR=4.615;VQSLOD=-3.039e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	47956604	rs367574892	CT	C	103.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.52;ReadPosRankSum=0.108;SOR=0.892;VQSLOD=5.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:9:22:22,0,145
chr3	48019232	rs6770467	A	G	4303.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=46;ExcessHet=3.0103;FS=2.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=-7.350e-01;SOR=1.339;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1721,138,0
chr3	48019258	rs6770477	A	G	5229.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.851;DB;DP=65;ExcessHet=3.0103;FS=9.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=0.595;SOR=1.569;VQSLOD=19.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2059,195,0
chr3	48029118	rs1013431	A	C	423.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=4.804;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:178,12,0
chr3	48206922	rs3731546	T	TA	2000.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.36;SOR=3.126;VQSLOD=6.19;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:36:481,36,0
chr3	48209486	rs3731539	C	T	6918.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.33;SOR=1.480;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1632,153,0
chr3	48219320	rs10582115	AAC	A	5942.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.61;SOR=1.244;VQSLOD=4.88;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1858,150,0
chr3	48228059	.	CA	C	249.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.770e-01;DP=16;ExcessHet=3.9794;FS=4.031;MQ=60.00;MQRankSum=0.00;QD=6.40;ReadPosRankSum=0.573;SOR=0.298;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:79:79,0,149
chr3	48327577	.	CT	C	65.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.13;MQRankSum=0.00;QD=6.59;ReadPosRankSum=0.100;SOR=0.646;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,5:10:64:0|1:48327577_CT_C:64,0,161:48327577
chr3	48327601	.	C	A	41.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=58.99;MQRankSum=-1.036e+00;NEGATIVE_TRAIN_SITE;QD=4.13;ReadPosRankSum=0.984;SOR=0.836;VQSLOD=-1.325e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,3:10:50:0|1:48327577_CT_C:50,0,230:48327577
chr3	48413537	rs1459242	C	T	330.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.78;SOR=4.407;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	48414197	rs9852211	A	T	5159.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=1.944;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1290,129,0
chr3	48414253	rs376602737	A	G	699.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.620e-01;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.46;ReadPosRankSum=-3.180e-01;SOR=0.818;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,29:61:99:708,0,788
chr3	48415007	rs4858793	C	G	2072.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=2.303;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:820,57,0
chr3	48416756	rs4858817	A	G	662.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.68;SOR=3.258;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:380,27,0
chr3	48419689	rs7653691	C	T	685.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.53;SOR=5.784;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:325,24,0
chr3	48419897	rs6442117	C	T	3272.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=0.711;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1736,176,0
chr3	48476431	rs13062723	C	G	25187.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.18;SOR=1.120;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,241:241:99:8165,723,0
chr3	48491350	rs377674597	GA	G	117.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.75;ReadPosRankSum=-8.430e-01;SOR=0.770;VQSLOD=5.01;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,8:32:99:112,0,452
chr3	48491995	rs11289308	AT	A	845.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790e-01;DB;DP=64;ExcessHet=6.9897;FS=1.501;MQ=59.99;MQRankSum=0.00;QD=8.55;ReadPosRankSum=-1.215e+00;SOR=0.922;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,20:64:99:316,0,425
chr3	48501053	.	C	T	229.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.17;ReadPosRankSum=-7.000e-01;SOR=0.784;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:238,0,425
chr3	48515079	rs4858795	C	T	6637.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=1.500;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2918,273,0
chr3	48520227	rs898226	T	C	398.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=1.179;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:277,27,0
chr3	48576483	rs7615170	C	G	2263.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=4.029;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:743,57,0
chr3	48593672	rs73078308	C	T	999.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067e+00;DB;DP=90;ExcessHet=3.0103;FS=2.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=2.31;SOR=0.444;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,42:90:99:1008,0,1359
chr3	48602523	rs138595277	G	GGGC	17359.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.73;SOR=1.289;VQSLOD=4.68;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,122:122:99:5493,372,0
chr3	48624611	rs2255532	C	T	2346.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=124;ExcessHet=3.9794;FS=4.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=1.39;SOR=0.445;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,49:124:99:1168,0,1876
chr3	48681765	rs147930066	CAG	C	194.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.35;ReadPosRankSum=2.43;SOR=0.561;VQSLOD=4.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,11:58:99:203,0,1456
chr3	48685660	rs73078348	C	T	141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.951e+00;DB;DP=16;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=-7.180e-01;SOR=0.027;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:150,0,297
chr3	48699807	rs144621109	C	G	5284.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.042e+00;DB;DP=403;ExcessHet=3.0103;FS=1.095;MQ=60.00;MQRankSum=0.00;QD=13.11;ReadPosRankSum=-1.259e+00;SOR=0.684;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:193,210:403:99:5293,0,5068
chr3	48719638	rs7633840	T	C	6578.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.13;DB;DP=76;ExcessHet=3.0103;FS=0.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=-8.260e-01;SOR=0.774;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,23:76:99:621,0,1333
chr3	48895401	.	CT	C	79.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=16;ExcessHet=6.9897;FS=4.212;MQ=59.75;MQRankSum=0.00;QD=3.47;ReadPosRankSum=1.30;SOR=1.702;VQSLOD=4.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,4:16:36:36,0,218
chr3	48897078	rs6414612	A	G	6177.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=1.622;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2107,204,0
chr3	48982335	rs55786114	C	T	484.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-02;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=0.953;SOR=0.776;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,17:24:99:493,0,152
chr3	49083695	.	TA	T	128.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.730e-01;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.90;ReadPosRankSum=-2.300e-01;SOR=1.085;VQSLOD=6.67;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,2:11:17:17,0,171
chr3	49210732	rs7617480	A	C	4942.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=61;ExcessHet=3.0103;FS=5.709;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.25;ReadPosRankSum=-4.300e-02;SOR=1.309;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,33:61:99:880,0,691
chr3	49211989	rs10865954	T	C	3280.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.85;ReadPosRankSum=-1.480e-01;SOR=0.796;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:514,0,346
chr3	49292991	rs11344456	C	CT	197.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.36;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-1.282e+00;SOR=1.981;VQSLOD=6.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,4:5:5:70,5,0
chr3	49314581	.	C	T	5673.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199e+00;DP=421;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.48;ReadPosRankSum=-7.100e-01;SOR=0.740;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:193,228:421:99:5682,0,4844
chr3	49317992	.	CAAA	C	113.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.23;ReadPosRankSum=-5.240e-01;SOR=1.179;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:32:79,0,32
chr3	49329721	rs146147164	GA	G	362.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.97;ReadPosRankSum=1.02;SOR=1.179;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:80:80,0,96
chr3	49330026	rs149131437	T	C	687.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=1.37;SOR=0.854;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:696,0,659
chr3	49339622	.	TA	T	350.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DP=19;ExcessHet=6.9897;FS=1.642;MQ=59.96;MQRankSum=0.00;QD=8.35;ReadPosRankSum=0.652;SOR=0.438;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:19:99:139,0,131
chr3	49354975	rs71077785	GT	G	907.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=30;ExcessHet=3.9794;FS=2.530;MQ=59.62;MQRankSum=0.00;QD=14.87;ReadPosRankSum=-3.490e-01;SOR=0.324;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,10:30:99:152,0,369
chr3	49397399	.	GGT	G	69.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.11;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:34:78,0,34
chr3	49397410	.	TG	T	50.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.58;ReadPosRankSum=0.674;SOR=0.105;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:59:59,0,59
chr3	49397421	.	AG	A	54.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.58;ReadPosRankSum=0.674;SOR=0.105;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,63
chr3	49397457	.	T	C	60.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DP=7;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;QD=8.61;ReadPosRankSum=1.07;SOR=0.027;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:49397457_T_C:69,0,235:49397457
chr3	49397458	.	G	T	60.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DP=7;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;QD=8.61;ReadPosRankSum=1.07;SOR=0.027;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:49397457_T_C:69,0,235:49397457
chr3	49397461	.	C	T	60.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DP=7;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;QD=8.61;ReadPosRankSum=0.712;SOR=0.027;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:49397457_T_C:69,0,235:49397457
chr3	49397467	.	G	A	60.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DP=7;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;QD=8.61;ReadPosRankSum=0.366;SOR=0.027;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:49397457_T_C:69,0,235:49397457
chr3	49397478	.	C	T	51.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287e+00;DP=10;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;QD=5.13;ReadPosRankSum=0.253;SOR=0.012;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:49397478_C_T:60,0,361:49397478
chr3	49397479	.	G	A	51.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287e+00;DP=10;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;QD=5.13;ReadPosRankSum=0.253;SOR=0.012;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:49397478_C_T:60,0,361:49397478
chr3	49397489	.	A	G	39.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e+00;DP=14;ExcessHet=3.0103;FS=8.451;MQ=60.00;MQRankSum=0.00;QD=2.80;ReadPosRankSum=-6.400e-01;SOR=0.006;VQSLOD=19.14;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:49397478_C_T:48,0,529:49397478
chr3	49397491	.	A	G	39.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.175e+00;DP=14;ExcessHet=3.0103;FS=8.451;MQ=60.00;MQRankSum=0.00;QD=2.80;ReadPosRankSum=-6.400e-01;SOR=0.006;VQSLOD=19.14;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:49397478_C_T:48,0,529:49397478
chr3	49406080	rs2878298	T	C	2210.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=64;ExcessHet=3.9794;FS=3.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-6.730e-01;SOR=1.055;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,11:64:99:193,0,1432
chr3	49406140	.	CT	C	196.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.70;MQRankSum=0.00;QD=7.03;ReadPosRankSum=-1.570e-01;SOR=1.270;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:9:56:86,0,56
chr3	49450817	rs1522929	T	C	3456.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.61;SOR=2.487;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:797,72,0
chr3	49463926	rs6762593	A	G	4901.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.80;SOR=2.286;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1489,138,0
chr3	49466871	rs6446275	A	G	1156.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=6.736;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1173,84,0
chr3	49548008	rs2131107	C	G	9246.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.12;SOR=1.591;VQSLOD=4.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2733,240,0
chr3	49548294	rs2329024	T	C	10172.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=1.626;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2991,275,0
chr3	49568095	rs2311801	G	A	2400.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=2.372;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:474,39,0
chr3	49687779	rs6774202	T	G	4865.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720e-01;DB;DP=58;ExcessHet=3.0103;FS=9.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=0.451;SOR=1.833;VQSLOD=18.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:796,0,790
chr3	49690199	rs4855885	G	A	17549.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=229;ExcessHet=3.0103;FS=1.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=0.874;SOR=0.539;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,112:229:99:2978,0,3040
chr3	49690627	rs35762866	G	A	4118.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.605e+00;DB;DP=273;ExcessHet=3.0103;FS=1.462;MQ=60.00;MQRankSum=-8.720e-01;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=1.08;SOR=0.603;VQSLOD=1.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:119,154:273:99:4127,0,3462
chr3	49701298	rs2005557	G	A	5085.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.568e+00;DB;DP=99;ExcessHet=1.5490;FS=4.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=0.177;SOR=0.407;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,56:99:99:1429,0,1287
chr3	49713753	rs6778597	T	C	12671.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=26.88;SOR=1.253;VQSLOD=1.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3540,306,0
chr3	49720393	rs2960548	C	G	10862.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=198;ExcessHet=1.5490;FS=0.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=-1.724e+00;SOR=0.642;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,86:198:99:2294,0,3071
chr3	49723726	rs3038471	G	GCC	2114.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.070e-01;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=59.47;MQRankSum=-1.320e+00;QD=16.79;ReadPosRankSum=0.177;SOR=0.473;VQSLOD=0.484;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,19:44:99:639,0,507
chr3	49723784	rs9713651	C	A	4008.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=92;ExcessHet=1.5490;FS=6.456;MQ=59.18;MQRankSum=0.132;NEGATIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=0.827;SOR=0.348;VQSLOD=-1.436e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,40:92:99:1132,0,1505
chr3	49724808	rs3020779	T	C	42878.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.830e-01;DB;DP=557;ExcessHet=3.0103;FS=0.000;MQ=59.74;MQRankSum=-3.335e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=0.022;SOR=0.632;VQSLOD=0.437;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:286,271:557:99:6998,0,7448
chr3	49736565	rs6785549	G	A	2886.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015e+00;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=0.428;SOR=0.697;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:648,0,585
chr3	49737323	rs11130217	A	G	2090.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=0.257;SOR=1.025;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:437,0,366
chr3	49739086	rs1491986	C	T	5435.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.639e+00;DB;DP=73;ExcessHet=3.9794;FS=2.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.92;ReadPosRankSum=-4.630e-01;SOR=0.768;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,34:73:99:937,0,1182
chr3	49739507	rs1491985	G	C	7681.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=59;ExcessHet=3.0103;FS=0.718;MQ=59.95;MQRankSum=-1.018e+00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=-3.110e-01;SOR=0.818;VQSLOD=2.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,28:59:99:768,0,731
chr3	49744392	rs3749241	A	G	4281.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;DB;DP=66;ExcessHet=3.9794;FS=12.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=0.709;SOR=1.635;VQSLOD=16.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:788,0,1028
chr3	49750188	rs3749240	T	A	5053.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e+00;DB;DP=74;ExcessHet=3.9794;FS=3.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=0.409;SOR=0.972;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,47:74:99:1253,0,758
chr3	49751856	rs12715437	T	C	411.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=-1.006e+00;SOR=1.179;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:114,0,101
chr3	49753003	rs34614773	T	G	3813.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432e+00;DB;DP=64;ExcessHet=3.9794;FS=0.671;MQ=59.97;MQRankSum=0.00;QD=20.07;ReadPosRankSum=0.694;SOR=0.593;VQSLOD=5.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,40:64:99:1047,0,605
chr3	49753788	rs11720705	A	G	10109.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=124;ExcessHet=3.0103;FS=0.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=0.380;SOR=0.584;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,52:124:99:1281,0,1873
chr3	49757750	.	G	GA	156.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.760e-01;DP=11;ExcessHet=6.9897;FS=1.457;MQ=60.00;MQRankSum=0.00;QD=3.01;ReadPosRankSum=0.850;SOR=0.396;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,2:11:14:14,0,172
chr3	49760039	rs1466685	T	C	21094.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.381e+00;DB;DP=215;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.01;ReadPosRankSum=-1.158e+00;SOR=0.226;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,215:215:99:6713,645,0
chr3	49785133	rs7374183	G	A	2561.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=30;ExcessHet=3.9794;FS=2.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=0.961;SOR=0.473;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,7:30:99:163,0,643
chr3	49828021	rs7620848	G	C	280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=19;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.205;SOR=1.371;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,10:19:99:0|1:49828021_G_C:289,0,264:49828021
chr3	49829653	rs7637711	A	G	107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e+00;DB;DP=12;ExcessHet=3.0103;FS=6.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=1.16;SOR=3.258;VQSLOD=14.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:116,0,255
chr3	49832261	rs6802890	A	G	1220.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217e+00;DB;DP=50;ExcessHet=3.9794;FS=0.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-4.900e-02;SOR=0.567;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:661,0,646
chr3	49834571	rs6809879	A	G	350.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;DB;DP=26;ExcessHet=3.0103;FS=5.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-7.720e-01;SOR=0.120;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:359,0,449
chr3	49836020	.	CA	C	151.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.640e-01;DP=15;ExcessHet=6.9897;FS=7.980;MQ=58.97;MQRankSum=0.00;QD=4.22;ReadPosRankSum=0.138;SOR=0.131;VQSLOD=3.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,3:15:41:41,0,186
chr3	49842625	rs2234391	A	G	1982.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702e+00;DB;DP=64;ExcessHet=3.9794;FS=1.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.743;SOR=0.813;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,28:64:99:750,0,1000
chr3	49842881	rs11400401	T	TG	3914.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=129;ExcessHet=3.9794;FS=1.507;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-1.926e+00;SOR=0.802;VQSLOD=6.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:61,68:129:99:1853,0,1702
chr3	49847642	rs1799844	G	A	1539.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=119;ExcessHet=3.0103;FS=2.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-1.435e+00;SOR=0.619;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,60:119:99:1548,0,1423
chr3	49848414	rs28535523	C	T	1909.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.395e+00;DB;DP=151;ExcessHet=3.0103;FS=1.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-3.220e-01;SOR=0.830;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,76:151:99:1918,0,2056
chr3	49851375	rs111900212	C	CCTGGCTCCT	1145.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=-9.520e-01;SOR=0.593;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,14:22:99:605,0,774
chr3	49866392	rs1128535	C	T	787.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=0.662;SOR=0.954;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:300,0,324
chr3	49866584	rs35129566	T	G	2805.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.147e+00;DB;DP=275;ExcessHet=3.0103;FS=4.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=-1.203e+00;SOR=0.474;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,131:275:99:2814,0,3741
chr3	49869158	rs695238	A	C	296.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=0.884;SOR=0.804;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:138,0,64
chr3	49869631	rs13085679	G	A	674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=-4.900e-02;SOR=0.804;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:323,0,242
chr3	49878264	rs1996663	C	G	192.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.69;ReadPosRankSum=0.175;SOR=0.446;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:201,0,554
chr3	49878395	rs1996664	A	G	854.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=94;ExcessHet=3.0103;FS=0.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=1.12;SOR=0.596;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,34:94:99:863,0,1577
chr3	49881134	rs2246832	A	T	1459.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.940e-01;DB;DP=65;ExcessHet=3.9794;FS=1.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-4.690e-01;SOR=0.897;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,29:65:99:721,0,1118
chr3	49882349	rs2247036	C	T	415.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=1.64;SOR=0.776;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:165,0,167
chr3	49884852	rs146175744	AAAGAG	A	214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.30;ReadPosRankSum=1.01;SOR=0.473;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:223,0,448
chr3	49897830	rs2681780	C	T	1829.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.980e-01;DB;DP=42;ExcessHet=3.9794;FS=3.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=1.09;SOR=0.376;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:589,0,681
chr3	49898000	rs2777888	A	G	4353.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150e-01;DB;DP=138;ExcessHet=3.9794;FS=4.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-9.330e-01;SOR=0.870;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,68:138:99:1694,0,1818
chr3	49898273	rs2681781	A	G	4906.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=157;ExcessHet=3.9794;FS=4.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-8.990e-01;SOR=0.924;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,76:157:99:2039,0,2098
chr3	49898318	rs62260755	C	G	2405.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.480e-01;DB;DP=182;ExcessHet=3.0103;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.248;SOR=0.823;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,94:182:99:2414,0,2291
chr3	49899795	rs3796386	G	A	1658.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-02;DB;DP=165;ExcessHet=3.0103;FS=2.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-1.020e-01;SOR=0.940;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,73:165:99:1667,0,2248
chr3	49924940	rs1062633	T	C	4278.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860e+00;DB;DP=150;ExcessHet=3.9794;FS=0.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.716;SOR=0.741;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,84:150:99:2006,0,1698
chr3	49928691	rs7433231	T	C	9489.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=1.305;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2666,249,0
chr3	49936102	rs2230590	T	C	4151.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DB;DP=123;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=1.15;SOR=0.725;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,75:123:99:2091,0,1126
chr3	49940078	rs2230593	C	T	3344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=233;ExcessHet=3.0103;FS=1.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.557;SOR=0.803;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,121:233:99:3353,0,2924
chr3	49941436	rs2280406	G	A	2451.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402e+00;DB;DP=81;ExcessHet=3.9794;FS=1.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-1.620e+00;SOR=0.519;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,35:81:99:833,0,1339
chr3	49948650	.	G	GATAGATAGATAGATGATAGATAC	79.05	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=34.13;SOR=2.303;VQSLOD=4.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	49948728	rs2352984	T	C	67.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=2.303;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	49949071	rs868891	A	G	1941.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014e+00;DB;DP=148;ExcessHet=3.0103;FS=0.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.159;SOR=0.597;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,77:148:99:1950,0,1815
chr3	49978069	rs6772095	C	T	6581.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=229;ExcessHet=3.9794;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=1.82;SOR=1.048;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,113:229:99:2908,0,3056
chr3	50006203	.	CTTTTTTTTTTT	C	105.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.55;ReadPosRankSum=-3.850e-01;SOR=2.093;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:114,0,100
chr3	50037123	rs3774733	C	G	131.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=-7.120e-01;SOR=0.527;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	50097319	rs2245365	C	A	598.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=-8.160e-01;SOR=1.519;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,154
chr3	50098993	.	CTTT	C,CTTTTT	847.76	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.200e-01;DP=38;ExcessHet=3.9794;FS=5.082;MQ=59.88;MQRankSum=-2.780e-01;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=-1.170e-01;SOR=1.437;VQSLOD=0.412;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,7,9:38:92:394,92,357,257,0,473
chr3	50114515	rs7061	C	T	2995.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490e-01;DB;DP=38;ExcessHet=3.0103;FS=0.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=0.336;SOR=0.577;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:537,0,519
chr3	50129374	rs5848907	T	TA	2650.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.22;SOR=3.750;VQSLOD=5.21;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:685,51,0
chr3	50129399	rs2013208	C	T	2472.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=24;ExcessHet=3.9794;FS=1.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.28;ReadPosRankSum=1.36;SOR=0.956;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:442,0,237
chr3	50131459	rs11130241	A	T	727.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.96;ReadPosRankSum=0.842;SOR=1.781;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:72:107,0,72
chr3	50144951	rs1061474	T	C	8651.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.625;DB;DP=91;ExcessHet=3.0103;FS=0.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=0.131;SOR=0.632;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1060,0,1126
chr3	50148305	rs2301166	C	G	1294.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.096e+00;DB;DP=12;ExcessHet=3.9794;FS=1.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=1.36;SOR=1.314;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:256,0,189
chr3	50153356	rs1138536	T	C	8747.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099e+00;DB;DP=93;ExcessHet=3.0103;FS=0.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.08;ReadPosRankSum=0.119;SOR=0.792;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,50:93:99:1342,0,1204
chr3	50155468	rs2624826	T	G	523.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=0.842;SOR=0.990;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:71:71,0,145
chr3	50192760	rs2526390	C	T	139.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.22;ReadPosRankSum=1.83;SOR=1.329;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:55:148,0,55
chr3	50197097	rs1046953	C	T	10719.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=454;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.561;SOR=0.673;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:215,239:454:99:5954,0,5063
chr3	50212512	rs2624833	G	T	2756.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;DB;DP=276;ExcessHet=3.0103;FS=1.507;MQ=59.95;MQRankSum=0.840;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=0.535;SOR=0.809;VQSLOD=2.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:163,113:276:99:2765,0,4326
chr3	50222926	rs1046956	T	A	5928.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-02;DB;DP=101;ExcessHet=3.0103;FS=2.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=0.258;SOR=0.942;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1239,0,1252
chr3	50223593	rs2073726	T	A	6185.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DB;DP=98;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=0.853;SOR=0.694;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,49:98:99:1222,0,1286
chr3	50223977	rs11717349	C	T	2411.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=36;ExcessHet=6.9897;FS=3.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=-3.010e-01;SOR=0.441;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:677,0,479
chr3	50224225	rs12632110	A	G	4048.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DB;DP=97;ExcessHet=3.9794;FS=0.482;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.365;SOR=0.731;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,41:97:99:1016,0,1377
chr3	50225029	rs11711407	A	G	6818.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165e+00;DB;DP=116;ExcessHet=3.9794;FS=1.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=2.83;SOR=0.596;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,55:116:99:1415,0,1656
chr3	50251833	rs5848902	A	AG	15625.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.66;SOR=0.778;VQSLOD=4.60;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,144:144:99:5127,433,0
chr3	50255663	rs35926495	C	T	7284.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.185e+00;DB;DP=95;ExcessHet=1.5490;FS=0.000;MQ=59.68;MQRankSum=-3.220e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.69;ReadPosRankSum=0.504;SOR=0.705;VQSLOD=0.294;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,54:95:99:0|1:50255663_C_T:2173,0,1760:50255663
chr3	50255666	rs56048629	C	T	7284.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.277e+00;DB;DP=96;ExcessHet=1.5490;FS=0.000;MQ=59.68;MQRankSum=-3.070e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.53;ReadPosRankSum=0.393;SOR=0.693;VQSLOD=0.301;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,55:96:99:0|1:50255663_C_T:2173,0,1760:50255663
chr3	50306752	rs67324803	G	GC	5158.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.165;VQSLOD=5.57;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1935,183,0
chr3	50308040	rs55689339	C	G	511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=-1.162e+00;SOR=1.329;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:520,0,211
chr3	50308718	rs4688739	A	G	5517.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=-1.761e+00;SOR=0.742;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:929,0,988
chr3	50329826	rs1076872	A	G	14921.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e+00;DB;DP=251;ExcessHet=3.9794;FS=1.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.561;SOR=0.835;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,131:251:99:3178,0,3038
chr3	50332697	rs13100173	G	A	8447.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844e+00;DB;DP=194;ExcessHet=1.5490;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=-8.360e-01;SOR=0.500;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,94:194:99:2431,0,2763
chr3	50357869	rs709210	A	C	7695.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=96;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=0.059;SOR=0.667;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,50:96:99:1566,0,1264
chr3	50597092	rs1034405	G	A	15596.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.474;DB;DP=224;ExcessHet=3.0103;FS=2.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=0.669;SOR=0.888;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,224:224:99:6667,672,0
chr3	50598396	rs41291736	G	A	1129.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=99;ExcessHet=3.0103;FS=5.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.319;SOR=0.925;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1138,0,1221
chr3	50609123	rs636168	T	C	9288.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=1.511;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3364,306,0
chr3	50609624	rs2232248	T	G	8021.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.890;DB;DP=102;ExcessHet=3.0103;FS=1.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.425;SOR=0.774;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,101:102:99:3100,280,0
chr3	50616049	rs1208923	G	A	1976.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.58;SOR=4.493;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:347,27,0
chr3	50645635	rs621975	T	G	9708.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.83;SOR=1.171;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2448,206,0
chr3	50645793	rs622502	C	G	9325.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.096e+00;DB;DP=121;ExcessHet=3.0103;FS=0.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.213;SOR=0.588;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3830,362,0
chr3	50678001	rs608961	C	T	3326.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=2.208;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:861,78,0
chr3	50682837	rs12491713	T	C	1108.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=6.593;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr3	50682899	rs936714	T	C	2589.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.38;SOR=4.310;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:480,36,0
chr3	50683809	rs876105	T	C	7635.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=1.414;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2562,225,0
chr3	50683977	rs876104	A	G	4800.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.130e-01;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.40;ReadPosRankSum=-1.243e+00;SOR=0.640;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,52:53:99:1683,119,0
chr3	50684011	rs876103	G	A	5689.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.757e+00;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.61;ReadPosRankSum=-2.350e-01;SOR=0.838;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1712,131,0
chr3	50684489	rs4468971	A	G	10096.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=0.916;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3070,282,0
chr3	50685642	rs9879397	A	G	1122.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=2.235;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:314,27,0
chr3	50879169	.	C	CTTTTTT	271.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;DP=17;ExcessHet=3.0103;FS=6.864;MQ=60.00;MQRankSum=0.00;QD=15.96;ReadPosRankSum=-3.938e+00;SOR=3.312;VQSLOD=0.095;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,8:17:99:0|1:50879169_C_CTTTTTT:280,0,425:50879169
chr3	50879175	.	T	TTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCCGGACTGCGG	263.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.47;ReadPosRankSum=-1.505e+00;SOR=3.611;VQSLOD=3.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:12:99:272,0,258
chr3	50879197	.	G	T	144.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.10;SOR=1.329;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:1|0:50879169_C_CTTTTTT:152,0,271:50879169
chr3	50879199	.	A	C	111.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.32;SOR=1.022;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:1|0:50879169_C_CTTTTTT:119,0,274:50879169
chr3	50879201	.	G	T	75.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.90;SOR=0.693;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:83:1|0:50879169_C_CTTTTTT:83,0,277:50879169
chr3	50879205	.	G	T	51.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.90;SOR=0.693;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:59:1|0:50879169_C_CTTTTTT:59,0,280:50879169
chr3	51246360	rs4301044	A	G	4097.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.890e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-2.200e-01;SOR=0.795;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1372,126,0
chr3	51246530	rs4340738	C	T	111.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=1.38;SOR=1.329;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:50,6,0
chr3	51264475	rs922612	A	G	301.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:105,9,0
chr3	51267350	rs1480364	A	G	428.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=4.977;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr3	51273711	rs1480362	A	G	4927.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=66;ExcessHet=3.0103;FS=2.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.67;ReadPosRankSum=-6.920e-01;SOR=0.466;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,65:66:99:2054,155,0
chr3	51273773	rs1480361	T	C	8131.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=0.732;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2367,239,0
chr3	51273992	rs2291162	C	G	652.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.63;ReadPosRankSum=1.61;SOR=3.056;VQSLOD=19.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr3	51274721	rs7634799	T	A	496.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.04;SOR=5.283;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr3	51274902	rs11386090	T	TA	2735.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=53;ExcessHet=1.5490;FS=3.895;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.43;ReadPosRankSum=1.33;SOR=0.410;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,19:53:99:548,0,1091
chr3	51284026	rs114740115	T	C	358.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=27;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.00;SOR=1.460;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:367,0,388
chr3	51297679	rs372189733	T	C	772.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.07;ReadPosRankSum=0.464;SOR=0.737;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:781,0,780
chr3	51370933	rs6445628	A	G	185.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=1.981;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr3	51393706	rs35251332	C	CAG	9015.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.44;SOR=0.809;VQSLOD=5.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2642,178,0
chr3	51395571	rs1542574	C	T	2276.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.51;DB;DP=32;ExcessHet=3.0103;FS=2.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=0.583;SOR=1.662;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1077,95,0
chr3	51413494	rs3749316	C	A	854.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=27;ExcessHet=3.9794;FS=4.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.244;SOR=1.473;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:304,0,340
chr3	51418348	rs2241784	G	A	5630.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.920e-01;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=0.138;SOR=0.762;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2370,237,0
chr3	51422766	rs13091931	G	T	2800.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.713e+00;DB;DP=28;ExcessHet=3.0103;FS=0.949;MQ=60.00;MQRankSum=0.00;QD=28.88;ReadPosRankSum=-3.910e-01;SOR=0.874;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:99:1159,112,0
chr3	51436456	rs17051782	G	A	224.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.08;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	51460010	rs62257541	G	A	529.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=0.349;SOR=1.022;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:46:273,0,46
chr3	51468970	.	CA	CAAA,C	397.20	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.96;DP=17;ExcessHet=3.9794;FS=2.806;MQ=59.73;MQRankSum=-4.160e-01;POSITIVE_TRAIN_SITE;QD=7.49;ReadPosRankSum=0.524;SOR=1.206;VQSLOD=1.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,4,6:17:44:132,46,245,44,0,166
chr3	51469107	rs4611808	C	T	5069.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DB;DP=63;ExcessHet=3.0103;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=0.377;SOR=0.595;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1783,188,0
chr3	51469248	rs35971989	A	G	440.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DB;DP=15;ExcessHet=3.9794;FS=6.396;MQ=60.00;MQRankSum=0.00;QD=13.75;ReadPosRankSum=0.457;SOR=0.127;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:269,0,180
chr3	51477627	rs7634991	C	T	231.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.020;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-1.437e+00;SOR=1.022;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr3	51517625	rs72112939	T	TTGTGTG,TTGTG	884.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.790e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.59;MQRankSum=-8.420e-01;QD=26.79;ReadPosRankSum=0.608;SOR=0.929;VQSLOD=0.594;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,7:12:99:512,193,155,139,0,101
chr3	51697493	rs904145	A	G	9038.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.98;SOR=1.539;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2540,231,0
chr3	51708144	rs73080631	G	T	153.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.141;SOR=0.368;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:162,0,320
chr3	51738256	rs4067	A	G	1226.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.29;ReadPosRankSum=0.832;SOR=0.523;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:430,36,0
chr3	51749874	rs61729078	C	T	2622.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.943;DB;DP=213;ExcessHet=3.0103;FS=7.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-1.277e+00;SOR=0.806;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,101:213:99:2631,0,2885
chr3	51895693	rs114750576	G	A	1145.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.990e-01;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.724;SOR=0.739;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,43:71:99:1154,0,710
chr3	51895850	rs986539	C	T	5223.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.830e-01;DB;DP=46;ExcessHet=3.0103;FS=4.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.02;ReadPosRankSum=0.073;SOR=0.668;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1703,138,0
chr3	51907736	rs7635409	A	G	3575.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=1.085;VQSLOD=18.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1535,147,0
chr3	51908226	rs1505403	T	C	13616.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.60;SOR=0.833;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4628,398,0
chr3	51908430	rs6794320	T	C	15112.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=0.984;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3952,368,0
chr3	51909240	rs1857800	G	C	350.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=1.402;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:108,9,0
chr3	51911103	rs201734789	TTTTTC	T	131.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=59.76;MQRankSum=0.696;QD=1.87;ReadPosRankSum=1.63;SOR=0.836;VQSLOD=0.041;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,10:35:86:86,0,535
chr3	51911114	rs199970040	TTTTC	T	121.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e-01;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=59.69;MQRankSum=0.00;QD=1.71;ReadPosRankSum=1.35;SOR=0.800;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,12:36:99:129,0,357
chr3	51929360	rs34574240	GA	G	8866.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.11;SOR=5.189;VQSLOD=6.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2791,271,0
chr3	51936949	rs7635125	T	C	17775.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.965;DB;DP=225;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=-6.100e-02;SOR=0.658;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,225:225:99:6874,674,0
chr3	51978220	rs28547534	A	G	15066.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=0.721;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,189:189:99:5562,566,0
chr3	51990119	rs28587738	A	C	4471.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.60;SOR=1.125;VQSLOD=19.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1640,138,0
chr3	51990315	rs28651222	A	G	12520.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.61;SOR=0.746;VQSLOD=19.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4220,393,0
chr3	51990817	rs73082757	C	T	981.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=85;ExcessHet=3.0103;FS=2.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.272;SOR=1.069;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,35:85:99:990,0,1395
chr3	51990930	rs13068631	G	C	496.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.351e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.123;SOR=0.551;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:145,0,360
chr3	52014486	rs79186892	G	A	1298.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.901e+00;DB;DP=105;ExcessHet=3.0103;FS=0.737;MQ=60.00;MQRankSum=0.00;QD=12.36;ReadPosRankSum=-1.960e-01;SOR=0.592;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,52:105:99:1307,0,1523
chr3	52159476	rs13081228	G	A	202.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.210;SOR=0.859;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:57:57,0,189
chr3	52232979	rs3216487	A	ATTTAC	7887.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269e+00;DB;DP=116;ExcessHet=1.5490;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=-1.654e+00;SOR=0.785;VQSLOD=6.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,69:116:99:2748,0,2900
chr3	52236762	rs352169	G	A	1304.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DB;DP=34;ExcessHet=1.5490;FS=2.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.77;ReadPosRankSum=0.266;SOR=0.424;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:332,0,649
chr3	52237970	rs352168	C	T	2885.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=63;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=1.26;SOR=0.718;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,30:63:99:728,0,916
chr3	52238656	rs352167	T	C	600.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=10;ExcessHet=1.5490;FS=6.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=1.59;SOR=3.855;VQSLOD=14.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:168,0,138
chr3	52238677	rs352166	C	T	835.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=12;ExcessHet=1.5490;FS=6.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.82;ReadPosRankSum=1.73;SOR=3.788;VQSLOD=14.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:167,0,211
chr3	52256697	rs352140	C	T	4065.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=85;ExcessHet=1.5490;FS=3.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=-6.550e-01;SOR=0.481;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,34:85:99:923,0,1387
chr3	52258372	rs352139	T	C	1667.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=-7.030e-01;SOR=2.137;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:365,0,471
chr3	52264907	rs352143	T	C	1095.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-8.840e-01;SOR=0.624;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,45:114:99:1104,0,1654
chr3	52266290	rs58879205	T	C	124.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-1.309e+00;SOR=0.892;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:133,0,137
chr3	52268866	rs353547	T	C	527.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=5.283;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr3	52272945	rs11441245	C	CG,CGG	1914.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.31;DB;DP=31;ExcessHet=3.9794;FS=22.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.75;ReadPosRankSum=0.165;SOR=3.219;VQSLOD=0.264;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,19,10:31:99:809,225,191,431,0,465
chr3	52279951	rs114645176	T	G	915.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.16;ReadPosRankSum=-1.054e+00;SOR=0.746;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,39:82:99:924,0,946
chr3	52293312	rs55847657	C	G	1214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;DB;DP=112;ExcessHet=3.0103;FS=5.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-2.220e-01;SOR=1.034;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,51:112:99:1223,0,1508
chr3	52293859	rs3210487	A	G	411.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.503e+00;DB;DP=24;ExcessHet=3.0103;FS=2.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=-2.640e-01;SOR=1.739;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:420,0,301
chr3	52325039	rs35976326	G	A	2531.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DB;DP=222;ExcessHet=3.0103;FS=2.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.261;SOR=0.906;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,105:222:99:2540,0,2827
chr3	52325759	rs2276834	A	G	5948.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=188;ExcessHet=1.5490;FS=0.926;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-1.053e+00;SOR=0.761;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,84:188:99:2100,0,2555
chr3	52328533	rs3733063	G	A	55.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.036e+00;SOR=0.446;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,102
chr3	52358117	rs11711934	T	C	162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.730e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=1.43;SOR=0.892;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:171,0,125
chr3	52359972	rs11710014	C	T	201.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=0.541;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:210,0,204
chr3	52366044	rs34762015	G	A	398.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840e-01;DB;DP=41;ExcessHet=3.0103;FS=8.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=-4.200e-02;SOR=2.953;VQSLOD=15.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,13:41:99:407,0,892
chr3	52379420	rs11718125	T	C	125.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=-5.450e-01;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:134,0,139
chr3	52382822	rs7633687	C	T	719.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=68;ExcessHet=3.0103;FS=0.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-6.830e-01;SOR=0.933;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,27:68:99:728,0,1165
chr3	52383120	rs34355561	G	A	4351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=322;ExcessHet=3.0103;FS=1.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.535;SOR=0.620;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:154,168:322:99:4360,0,3810
chr3	52387078	rs35860312	T	C	435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=36;ExcessHet=3.0103;FS=1.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.642;SOR=1.106;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:444,0,565
chr3	52390555	rs66462821	C	T	104.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:113,0,67
chr3	52391473	rs57849650	G	A	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195e+00;DB;DP=38;ExcessHet=3.0103;FS=2.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-7.300e-02;SOR=1.609;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:567,0,697
chr3	52391735	rs11714402	A	C	2399.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.696e+00;DB;DP=208;ExcessHet=3.0103;FS=1.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-8.000e-03;SOR=0.826;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,103:208:99:2408,0,2992
chr3	52392389	rs116084959	G	C	95.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-4.140e-01;SOR=0.307;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:104,0,196
chr3	52392877	rs11707864	G	A	205.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.457;SOR=0.399;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:214,0,329
chr3	52396944	rs11706515	G	A	969.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=77;ExcessHet=3.0103;FS=3.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-5.500e-01;SOR=0.380;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:978,0,964
chr3	52400740	rs3752819	G	C	1739.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=137;ExcessHet=3.0103;FS=3.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=1.17;SOR=0.971;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,63:137:99:1748,0,2059
chr3	52404111	rs746239	G	A	1723.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.273e+00;DB;DP=168;ExcessHet=3.0103;FS=0.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=1.73;SOR=0.750;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,73:168:99:1732,0,2754
chr3	52409421	rs56002041	A	G	2067.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.96;DB;DP=163;ExcessHet=3.0103;FS=2.006;MQ=59.99;MQRankSum=0.959;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-3.690e-01;SOR=0.886;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:86,77:163:99:2076,0,1894
chr3	52415865	rs770284	A	G	5677.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.61;SOR=3.912;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1821,144,0
chr3	52417638	rs28481563	T	C	305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e+00;DB;DP=24;ExcessHet=3.0103;FS=3.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-7.040e-01;SOR=1.609;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:314,0,443
chr3	52420414	rs11720365	G	A	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.664e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-2.090e+00;SOR=0.914;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:341,0,291
chr3	52420901	rs11721277	G	A	359.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=0.270;SOR=0.874;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,14:40:99:368,0,784
chr3	52428988	rs11708581	C	A	1541.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157e+00;DB;DP=126;ExcessHet=3.0103;FS=2.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.047;SOR=0.504;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,68:126:99:1550,0,1355
chr3	52430698	rs365048	A	G	19207.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=0.902;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5400,511,0
chr3	52431671	rs390802	G	A	671.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932e+00;DB;DP=67;ExcessHet=3.0103;FS=2.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=0.148;SOR=0.363;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,26:67:99:680,0,1300
chr3	52432214	rs11711974	G	A	1578.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;DB;DP=116;ExcessHet=3.0103;FS=1.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-8.570e-01;SOR=0.854;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,63:116:99:1587,0,1242
chr3	52432610	rs56322342	G	A	132.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=8;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=1.28;SOR=3.258;VQSLOD=17.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:141,0,144
chr3	52442354	rs123602	G	C	210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=-1.047e+00;SOR=0.892;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:219,0,161
chr3	52453893	rs498778	C	T	3939.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=0.888;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1362,133,0
chr3	52454262	rs3886875	T	G	287.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.770e-01;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-7.700e-01;SOR=0.728;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:296,0,322
chr3	52469628	rs61729091	C	T	1212.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930e-01;DB;DP=86;ExcessHet=3.0103;FS=0.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=1.32;SOR=0.567;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,47:86:99:1221,0,1059
chr3	52471942	rs82825	G	A	8852.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.033e+00;DB;DP=128;ExcessHet=3.0103;FS=0.502;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=1.92;SOR=0.656;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,63:128:99:1596,0,1837
chr3	52476246	rs34900551	G	A	1199.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=98;ExcessHet=3.0103;FS=1.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=-5.940e-01;SOR=0.948;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,43:98:99:1208,0,1467
chr3	52477080	rs2016575	T	C	11223.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.290e-01;DB;DP=148;ExcessHet=3.0103;FS=3.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.51;ReadPosRankSum=1.67;SOR=0.598;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,73:148:99:1775,0,1875
chr3	52478730	.	CGCACACAAACACGGCACACGCAAACTCGGCACACGCACACAAACTCGGCACACGCACACAAACACTGCACAT	C	3101.69	PASS	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.69;QD=35.95;SOR=1.885;VQSLOD=4.31;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,25:25:78:1101,78,0
chr3	52488202	rs1035002	C	T	3013.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=8.739;VQSLOD=23.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:897,69,0
chr3	52489564	rs968588	A	T	702.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.10;ReadPosRankSum=0.702;SOR=2.468;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:152,0,174
chr3	52492085	rs4687614	G	A	2181.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=30;ExcessHet=3.0103;FS=2.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=-1.080e-01;SOR=1.146;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:290,0,498
chr3	52492475	rs9850471	A	G	701.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.41;ReadPosRankSum=-6.970e-01;SOR=2.636;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:146,0,132
chr3	52492707	rs1541495	T	C	4062.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=-1.516e+00;SOR=0.708;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,26:42:99:761,0,336
chr3	52505758	rs3065763	G	GAT	10422.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.880e-01;DB;DP=104;ExcessHet=3.0103;FS=0.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.65;ReadPosRankSum=-4.600e-02;SOR=0.782;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,51:104:99:2022,0,2313
chr3	52506282	rs4312651	A	G	3332.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.290e-01;DB;DP=46;ExcessHet=3.0103;FS=3.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=2.95;SOR=1.206;VQSLOD=22.41;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:24,22:46:99:530,0,668
chr3	52506426	rs6784615	C	T	6146.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=0.931;SOR=0.726;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,33:88:99:724,0,1351
chr3	52506491	rs6445486	A	G	5516.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=71;ExcessHet=3.0103;FS=2.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-1.416e+00;SOR=0.957;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,27:71:99:763,0,1186
chr3	52507719	rs13094915	G	C	4954.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DB;DP=112;ExcessHet=1.5490;FS=0.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=-9.790e-01;SOR=0.681;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,61:112:99:1620,0,1259
chr3	52510592	rs9856575	G	A	9639.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=140;ExcessHet=3.0103;FS=1.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=-1.780e-01;SOR=0.874;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,58:140:99:1353,0,2015
chr3	52510697	rs7620015	G	A	2568.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=28;ExcessHet=3.0103;FS=7.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.95;ReadPosRankSum=0.329;SOR=2.862;VQSLOD=18.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:332,0,530
chr3	52512318	rs2109559	A	G	6767.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.054e+00;DB;DP=74;ExcessHet=3.0103;FS=3.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=1.56;SOR=0.806;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,36:74:99:906,0,1087
chr3	52513898	rs41292364	G	C	920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120e-01;DB;DP=64;ExcessHet=3.0103;FS=1.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.52;SOR=0.919;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,36:64:99:929,0,669
chr3	52513940	rs4687618	T	C	3261.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507e+00;DB;DP=43;ExcessHet=3.0103;FS=1.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=-4.520e-01;SOR=1.179;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,27:43:99:805,0,422
chr3	52518786	rs4687619	T	C	4690.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.378e+00;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.418;SOR=0.633;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,14:46:99:337,0,943
chr3	52522659	rs887514	T	C	5352.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.579e+00;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=0.950;SOR=0.558;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:685,0,1146
chr3	52523405	rs887515	C	T	6515.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=0.413;SOR=0.690;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,38:77:99:1012,0,985
chr3	52524574	rs6810027	C	A	1588.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=5;ExcessHet=3.0103;FS=10.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=-1.645e+00;SOR=5.994;VQSLOD=11.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:108,0,65
chr3	52524974	rs4687621	A	C	2059.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.98;ReadPosRankSum=-5.470e-01;SOR=1.643;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:232,0,135
chr3	52529266	rs758800	T	C	3778.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670e+00;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=-1.358e+00;SOR=0.818;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:656,0,708
chr3	52529773	rs9846089	T	G	1087.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.08;ReadPosRankSum=-1.693e+00;SOR=1.148;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:137,0,152
chr3	52536308	rs758801	A	C	2625.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=32;ExcessHet=3.0103;FS=5.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=-6.840e-01;SOR=1.512;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:394,0,521
chr3	52537969	rs4687545	T	C	11672.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319e+00;DB;DP=103;ExcessHet=3.0103;FS=9.240;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=-7.270e-01;SOR=0.209;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,54:103:99:1545,0,1584
chr3	52540773	rs1010553	T	C	13008.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=285;ExcessHet=1.5490;FS=0.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=-4.150e-01;SOR=0.634;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:135,150:285:99:3936,0,3337
chr3	52542919	rs1010554	T	C	935.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=-1.176e+00;SOR=0.566;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:67:233,0,67
chr3	52544470	rs9835659	A	G	10828.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640e-01;DB;DP=113;ExcessHet=3.0103;FS=1.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=1.01;SOR=0.845;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,55:113:99:1465,0,1518
chr3	52546487	rs7644763	C	T	11136.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=115;ExcessHet=3.0103;FS=1.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=-1.451e+00;SOR=0.555;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,47:115:99:1227,0,1676
chr3	52551010	rs79979130	C	T	801.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.741;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=-4.530e-01;SOR=0.551;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,28:39:99:810,0,223
chr3	52551265	rs66824127	T	C	3703.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743e+00;DB;DP=72;ExcessHet=1.5490;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=0.324;SOR=0.818;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,28:72:99:0|1:52551265_T_C:992,0,2771:52551265
chr3	52551284	rs67409736	G	T	4289.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954e+00;DB;DP=97;ExcessHet=1.5490;FS=4.574;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=0.769;SOR=1.133;VQSLOD=6.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:64,33:97:99:0|1:52551265_T_C:1100,0,3273:52551265
chr3	52552922	.	C	CCCCGCCCCGCCCCGT	722.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.690e-01;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=-1.398e+00;SOR=0.941;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,5:20:99:160,0,2242
chr3	52553625	rs112646045	TGTAA	T	5671.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=105;ExcessHet=1.5490;FS=5.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=-2.400e-02;SOR=1.134;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:66,39:105:99:1439,0,3925
chr3	52554304	rs7630214	G	C	20856.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.143;DB;DP=254;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=0.582;SOR=0.690;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,254:254:99:8397,761,0
chr3	52555957	rs9853056	T	C	9301.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628e+00;DB;DP=276;ExcessHet=1.5490;FS=1.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=0.733;SOR=0.771;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,155:276:99:4043,0,3179
chr3	52556369	rs35325270	C	T	4420.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.689;DB;DP=401;ExcessHet=3.0103;FS=1.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=1.76;SOR=0.683;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:213,188:401:99:4429,0,5317
chr3	52558008	rs13303	T	C	7896.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.212e+00;DB;DP=178;ExcessHet=1.5490;FS=2.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-7.130e-01;SOR=0.862;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,84:178:99:2485,0,2765
chr3	52563462	rs35371456	C	T	331.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=-3.070e-01;SOR=1.473;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:340,0,181
chr3	52567463	rs183059955	T	C	1317.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=107;ExcessHet=3.0103;FS=4.881;MQ=60.00;MQRankSum=0.00;QD=12.31;ReadPosRankSum=1.70;SOR=0.354;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,49:107:99:1326,0,1558
chr3	52567617	rs66782572	A	G	4491.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=101;ExcessHet=1.5490;FS=10.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.77;ReadPosRankSum=0.177;SOR=1.521;VQSLOD=18.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,49:101:99:1313,0,1228
chr3	52568805	rs7639267	G	T	1842.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885e+00;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.77;ReadPosRankSum=-9.600e-01;SOR=1.270;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:699,0,293
chr3	52584431	rs34372721	T	TCTC	2554.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=43;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.16;ReadPosRankSum=1.22;SOR=0.817;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,20:43:99:771,0,1122
chr3	52620764	rs200031540	CA	C,CAAAAA	806.13	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.815;DB;DP=16;ExcessHet=3.0103;FS=1.310;MQ=59.91;MQRankSum=0.00;QD=17.52;ReadPosRankSum=0.00;SOR=0.499;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,6,4:16:53:201,112,194,53,0,298
chr3	52637486	rs2276824	C	G	1051.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=6.518;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:504,36,0
chr3	52659079	rs13086936	T	C	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.060e-01;DB;DP=30;ExcessHet=3.0103;FS=4.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-1.271e+00;SOR=0.184;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:286,0,527
chr3	52676065	rs376663529	CA	C	1818.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=64;ExcessHet=3.9794;FS=1.899;MQ=59.97;MQRankSum=0.450;QD=9.73;ReadPosRankSum=0.894;SOR=0.850;VQSLOD=0.381;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,10:64:58:58,0,1211
chr3	52677478	rs13099479	G	A	71.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=13;ExcessHet=3.0103;FS=2.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.48;ReadPosRankSum=-1.690e-01;SOR=1.609;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:80:80,0,273
chr3	52720080	rs1108842	A	C	7168.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=164;ExcessHet=1.5490;FS=1.020;MQ=59.96;MQRankSum=-9.400e-01;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=-5.400e-01;SOR=0.607;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,86:164:99:2195,0,1935
chr3	52722266	rs3836492	AT	A	1451.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=-9.070e-01;SOR=0.977;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,17:32:99:385,0,332
chr3	52722335	rs3774349	A	C	713.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.00;ReadPosRankSum=0.210;SOR=4.712;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:24:170,0,24
chr3	52725718	.	ATT	A	742.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.67;ReadPosRankSum=-1.390e-01;SOR=0.724;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,8:25:99:248,0,234
chr3	52734580	.	C	CT	54.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.57;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:13:62,0,13
chr3	52814256	rs2302417	T	A	1092.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=41;ExcessHet=1.5490;FS=3.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-3.150e-01;SOR=1.352;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:425,0,503
chr3	52815905	rs2710323	T	C	1998.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.680e-01;DB;DP=31;ExcessHet=1.5490;FS=5.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.83;ReadPosRankSum=-1.786e+00;SOR=2.268;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:607,0,418
chr3	52817149	rs372392661	TGGGGGTCTCAGGC	T	1557.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.393e+00;DB;DP=100;ExcessHet=3.0103;FS=0.770;MQ=60.00;MQRankSum=0.00;QD=15.73;ReadPosRankSum=-2.200e-02;SOR=0.571;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:59,40:100:99:1566,0,3659
chr3	52817164	rs199729098	A	AC	1578.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254e+00;DB;DP=95;ExcessHet=3.0103;FS=1.690;MQ=60.00;MQRankSum=0.00;QD=16.79;ReadPosRankSum=-2.781e+00;SOR=0.481;VQSLOD=4.49;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:52,42:95:99:1587,0,3198
chr3	52818986	rs145225292	T	C	403.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.060e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=0.107;SOR=0.606;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,14:42:99:412,0,926
chr3	52821992	rs68094128	CT	C	6916.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.720e-01;DB;DP=133;ExcessHet=1.5490;FS=0.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=1.14;SOR=0.625;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,60:133:99:1960,0,2503
chr3	52830764	rs2240921	C	T	1693.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530e-01;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-5.970e-01;SOR=0.731;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,76:165:99:1702,0,2304
chr3	52833805	rs3617	C	A	3306.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.668e+00;DB;DP=91;ExcessHet=1.5490;FS=6.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.80;ReadPosRankSum=1.48;SOR=0.364;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,44:91:99:1045,0,1408
chr3	52836217	rs740920	G	A	468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=0.414;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:477,0,440
chr3	52837793	rs4481150	T	C	2227.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.80;DB;DP=34;ExcessHet=1.5490;FS=10.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.29;ReadPosRankSum=0.455;SOR=3.021;VQSLOD=14.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:717,0,387
chr3	52838654	rs9968117	C	T	1371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.773e+00;DB;DP=80;ExcessHet=3.0103;FS=2.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=-9.350e-01;SOR=0.429;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,54:80:99:1380,0,727
chr3	52841220	rs13059141	G	A	56.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-1.036e+00;SOR=0.446;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,110
chr3	52847544	rs17331178	C	A	811.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.600e-02;DB;DP=64;ExcessHet=3.0103;FS=2.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-7.390e-01;SOR=0.407;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,31:64:99:820,0,846
chr3	52847601	rs2071044	C	T	1910.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.494e+00;DB;DP=38;ExcessHet=1.5490;FS=2.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.19;ReadPosRankSum=0.470;SOR=0.428;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:551,0,567
chr3	52848207	rs77347777	C	T	2165.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DB;DP=214;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=1.72;SOR=0.706;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,95:214:99:2174,0,2883
chr3	52851137	rs2240917	T	C	1636.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-02;DB;DP=30;ExcessHet=1.5490;FS=3.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=1.17;SOR=1.398;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:342,0,451
chr3	52852060	rs2245538	T	C	2011.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;DB;DP=52;ExcessHet=1.5490;FS=2.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=1.17;SOR=1.117;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:551,0,716
chr3	52853340	rs7620907	G	C	4468.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.64;SOR=2.434;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1369,120,0
chr3	52853401	rs3821831	C	T	805.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.819e+00;DB;DP=86;ExcessHet=3.0103;FS=0.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=1.63;SOR=0.894;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,36:86:99:814,0,1363
chr3	52854140	rs9831977	T	G	272.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-3.137e+00;SOR=2.030;VQSLOD=21.46;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:281,0,210
chr3	52854186	rs2239548	A	C	795.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=1.5490;FS=5.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=0.876;SOR=0.082;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:67:67,0,183
chr3	52857778	rs34860124	T	A	1440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DB;DP=119;ExcessHet=3.0103;FS=2.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.439;SOR=0.950;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,59:119:99:1449,0,1503
chr3	52859212	rs2240916	T	A	176.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-1.026e+00;SOR=1.085;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:185,0,133
chr3	52864584	rs2071042	A	G	9353.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=269;ExcessHet=1.5490;FS=4.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=-4.540e-01;SOR=1.008;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:156,113:269:99:2724,0,3808
chr3	52864635	rs2276818	A	G	2021.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=184;ExcessHet=3.0103;FS=3.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.091;SOR=1.033;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,78:184:99:2030,0,2615
chr3	52866845	rs11915546	A	C	278.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.26;SOR=4.174;VQSLOD=18.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr3	52866936	rs79664140	A	G	61.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.253;SOR=1.179;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:70:70,0,139
chr3	52866988	rs9681089	A	G	2505.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=2.602;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:618,48,0
chr3	52867288	rs4687661	A	T	9971.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=0.879;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3409,347,0
chr3	52867595	rs60332615	C	A	3008.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.520;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=-1.332e+00;SOR=0.688;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:608,0,443
chr3	52867715	rs6787916	G	C	11524.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=0.779;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3557,345,0
chr3	52867811	rs6776876	A	T	8592.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=1.162;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2533,240,0
chr3	52868610	rs11922961	T	C	948.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=0.061;SOR=1.292;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:205,0,243
chr3	52868668	rs142854055	G	GCACACA,GCACACACA	3453.93	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=58.68;QD=32.48;SOR=2.271;VQSLOD=3.94;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,14,11:30:99:1333,414,310,501,0,411
chr3	52868670	rs62255421	G	A	5631.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=58.89;POSITIVE_TRAIN_SITE;QD=31.99;SOR=2.187;VQSLOD=5.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1593,108,0
chr3	52869263	rs2276823	C	A	368.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=3.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=1.04;SOR=2.494;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,100
chr3	52870729	rs11431693	C	CA	8986.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.97;SOR=1.132;VQSLOD=5.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2325,189,0
chr3	52871031	rs6774869	C	T	1191.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=6.869;VQSLOD=24.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr3	52874446	rs6769789	C	T	1929.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.114e+00;DB;DP=41;ExcessHet=1.5490;FS=1.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=-1.137e+00;SOR=0.473;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:640,0,434
chr3	52874716	rs374916394	GTT	G	1268.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=23;ExcessHet=3.0103;FS=7.158;MQ=60.00;MQRankSum=0.00;QD=21.14;ReadPosRankSum=2.34;SOR=2.468;VQSLOD=3.51;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,12:23:99:308,0,246
chr3	52874753	rs56019197	T	C	985.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=18;ExcessHet=1.5490;FS=2.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=0.533;SOR=1.739;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:378,0,230
chr3	52874779	rs7638431	G	A	1361.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.86;SOR=7.168;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:38:458,38,0
chr3	52876716	rs6776990	C	T	851.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=6.358;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:171,15,0
chr3	52877647	rs55829187	C	CA	8818.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=36.89;SOR=2.123;VQSLOD=3.47;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,63:63:99:1|1:52877647_C_CA:2815,190,0:52877647
chr3	52877649	rs56008508	G	A	8818.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.62;SOR=2.105;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,62:62:99:1|1:52877647_C_CA:2815,190,0:52877647
chr3	52877720	rs4687668	T	C	10215.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=0.900;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3301,333,0
chr3	52878600	rs56214994	G	C	161.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=1.981;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr3	52878721	rs7650966	G	C	2155.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.18;SOR=6.518;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:669,48,0
chr3	52878746	rs10663469	C	CAG	3475.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=4.323;VQSLOD=6.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:72:1076,72,0
chr3	52878825	rs7629528	C	A	7332.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=30.30;SOR=1.291;VQSLOD=3.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2362,236,0
chr3	52880420	rs4687670	T	C	5745.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.41;SOR=1.897;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1875,171,0
chr3	52880492	rs4687671	T	C	7310.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=0.861;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2549,258,0
chr3	52880730	rs4234637	C	A	2537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.63;SOR=2.584;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:52880728_C_A:609,45,0:52880728
chr3	52880740	rs2001732	C	T	80.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.69;ReadPosRankSum=2.36;SOR=0.148;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,3:12:89:0|1:52880728_C_A:89,0,269:52880728
chr3	52881634	rs5848962	T	TG	4881.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=1.043;VQSLOD=5.10;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1780,150,0
chr3	52883654	rs3216716	CT	C	6502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.50;SOR=3.272;VQSLOD=6.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1822,135,0
chr3	52884234	rs4687674	G	C	549.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.26;SOR=5.421;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	52886406	rs2246889	T	C	1111.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=6.518;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:52886406_T_C:270,18,0:52886406
chr3	52886411	rs2246888	A	C	1187.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.02;SOR=6.666;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:52886406_T_C:270,18,0:52886406
chr3	52886914	rs4687675	A	T	1561.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=5.136;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:502,39,0
chr3	52952433	rs3733034	C	T	136.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=9;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.687;SOR=1.981;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:145,0,105
chr3	52956023	rs3733035	A	G	49.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.07;ReadPosRankSum=-3.660e-01;SOR=0.223;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,183
chr3	52960013	rs11360013	GC	G	10693.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.33;SOR=2.088;VQSLOD=5.85;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3293,265,0
chr3	52960256	rs34584015	AG	A	11891.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.586e+00;DB;DP=114;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.26;ReadPosRankSum=0.638;SOR=0.775;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,113:114:99:1|1:52960256_AG_A:5018,298,0:52960256
chr3	52960261	rs34585187	C	A	11916.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.064;DB;DP=115;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.17;ReadPosRankSum=0.256;SOR=0.787;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,114:115:99:1|1:52960256_AG_A:5043,301,0:52960256
chr3	52962561	rs57453382	TAAC	T	566.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.27;SOR=5.283;VQSLOD=5.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr3	52964633	rs5848967	AC	A	990.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.52;SOR=1.426;VQSLOD=4.75;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:52964633_AC_A:212,15,0:52964633
chr3	52964640	rs5848968	G	GA	958.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=1.230;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:52964633_AC_A:180,12,0:52964633
chr3	52965255	rs10510761	C	T	65.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:74,0,70
chr3	52968726	rs2257216	T	C	1588.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.515;DB;DP=26;ExcessHet=1.5490;FS=1.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=0.257;SOR=1.144;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:296,0,328
chr3	52968801	rs2710315	T	C	4542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=0.904;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:873,84,0
chr3	53003021	rs2245424	G	C	895.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.574e+00;DB;DP=23;ExcessHet=1.5490;FS=1.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=-2.170e-01;SOR=1.460;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:292,0,417
chr3	53003179	rs11717619	A	C	1240.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=107;ExcessHet=3.0103;FS=4.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=1.86;SOR=0.603;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1249,0,1298
chr3	53126672	rs141077598	TTGCCCTGGACAAGGC	T	1894.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.990e-01;DB;DP=110;ExcessHet=3.0103;FS=0.757;MQ=60.00;MQRankSum=0.00;QD=17.22;ReadPosRankSum=-9.610e-01;SOR=0.593;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,50:110:99:1903,0,9153
chr3	53133526	rs2581829	A	G	2644.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=31;ExcessHet=3.0103;FS=1.253;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=0.381;SOR=0.985;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:31:99:573,0,335
chr3	53138254	rs1560333	T	C	2285.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=2.737;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:793,78,0
chr3	53139426	rs372055742	TCCCCG	T	118.65	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=0.967;SOR=1.609;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,2:3:1:1|1:53139426_TCCCCG_T:83,1,0:53139426
chr3	53139441	rs12637287	C	G	189.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.55;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:27:0|1:53139426_TCCCCG_T:81,0,27:53139426
chr3	53139506	rs2564942	C	T	1119.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.70;ReadPosRankSum=-7.320e-01;SOR=3.767;VQSLOD=16.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:53139506_C_T:243,0,144:53139506
chr3	53139507	rs2581774	A	G	1119.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.93;ReadPosRankSum=-7.320e-01;SOR=3.841;VQSLOD=15.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:53139506_C_T:243,0,144:53139506
chr3	53154132	rs373476566	ATTAACT	A	186.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.63;ReadPosRankSum=-3.660e-01;SOR=1.609;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:99:0|1:53154132_ATTAACT_A:195,0,195:53154132
chr3	53154139	rs199819350	GCACT	G	189.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.58;ReadPosRankSum=-6.740e-01;SOR=2.303;VQSLOD=5.34;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,5:6:99:0|1:53154132_ATTAACT_A:198,0,142:53154132
chr3	53160132	rs9867023	T	C	47.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=-1.282e+00;SOR=0.307;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:56:56,0,144
chr3	53160193	rs6769931	G	T	60.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.30;SOR=2.303;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr3	53160216	rs6809973	T	C	76.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.28;SOR=2.303;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	53164193	rs9868406	C	T	207.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-1.698e+00;SOR=0.495;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:216,0,327
chr3	53212574	rs2306571	C	G	4579.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.658e+00;DB;DP=49;ExcessHet=3.0103;FS=0.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=0.351;SOR=0.567;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1507,147,0
chr3	53213538	rs2035451	C	G	17629.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=1.960;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4691,426,0
chr3	53213815	rs3830263	C	CGT,CGTGT	6628.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.52;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=1.22;SOR=5.709;VQSLOD=0.972;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,8,38:47:99:1975,1261,1154,236,0,151
chr3	53215875	rs11130350	A	C	12749.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=1.18;SOR=0.640;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,156:157:99:5160,461,0
chr3	53216051	rs6445568	T	C	2268.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=5.784;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:597,45,0
chr3	53218691	rs11424887	C	CA	413.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=6.9897;FS=6.160;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-8.770e-01;SOR=2.517;VQSLOD=5.23;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,4:5:9:78,0,9
chr3	53219278	rs6798141	G	T	486.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.76;SOR=1.765;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr3	53220444	rs6793352	T	C	5225.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.03;SOR=1.416;VQSLOD=19.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1367,102,0
chr3	53220473	rs34435761	T	TC	1552.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=33;ExcessHet=1.5490;FS=2.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=0.655;SOR=1.329;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1018,99,0
chr3	53221095	rs11130351	A	G	1287.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.50;SOR=4.743;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr3	53222761	rs2306574	C	T	11296.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=143;ExcessHet=3.0103;FS=3.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=-3.650e-01;SOR=0.437;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,141:143:99:4281,379,0
chr3	53223291	rs7630600	T	G	2481.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.87;QD=31.81;SOR=0.798;VQSLOD=3.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1111,90,0
chr3	53223927	rs1075865	C	G	9217.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=0.889;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2859,291,0
chr3	53224002	rs900495	T	C	8468.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=1.320;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2620,255,0
chr3	53262867	rs13075304	G	A	1625.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=7.428;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:321,24,0
chr3	53264841	rs10666288	T	TAG	1682.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=2.554;VQSLOD=6.14;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:53264841_T_TAG:585,39,0:53264841
chr3	53264842	rs55649678	T	C	1682.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.61;SOR=2.368;VQSLOD=18.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:53264841_T_TAG:585,39,0:53264841
chr3	53267133	rs6445573	G	C	9551.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.35;SOR=2.021;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2822,243,0
chr3	53274602	rs2306569	T	C	330.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.365;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=0.542;SOR=1.061;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr3	53324819	rs201612547	ATGGCAC	A	4351.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=29.11;SOR=1.337;VQSLOD=3.47;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1485,99,0
chr3	53325905	rs13063111	C	A	637.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=3.383;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:208,18,0
chr3	53346142	rs144565232	GCT	G	442.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=1.5490;FS=4.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.64;ReadPosRankSum=1.65;SOR=2.670;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:388,27,0
chr3	53346525	.	CT	C,CTT	321.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.080;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.84;MQRankSum=0.00;QD=6.43;ReadPosRankSum=-1.405e+00;SOR=0.621;VQSLOD=5.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,6,6:16:83:191,83,178,111,0,190
chr3	53376081	rs13077680	G	C	774.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.610e-01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=0.189;SOR=1.688;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:456,33,0
chr3	53529013	rs312479	T	A	1380.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.759e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=58.39;MQRankSum=-8.590e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=-1.021e+00;SOR=1.569;VQSLOD=-1.339e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:310,0,304
chr3	53529140	rs312480	T	C	4995.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=81;ExcessHet=3.0103;FS=0.624;MQ=59.70;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=-1.507e+00;SOR=0.610;VQSLOD=5.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,35:81:99:1069,0,1345
chr3	53700704	rs3821856	A	G	249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=1.20;SOR=1.270;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:258,0,139
chr3	53752120	rs2633724	T	C	360.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=-7.600e-02;SOR=1.061;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:161,0,249
chr3	53764272	rs139366806	CTTTTG	C	324.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.73;ReadPosRankSum=1.53;SOR=0.412;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,4:13:99:141,0,541
chr3	53766026	rs2612033	T	C	4952.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657e+00;DB;DP=125;ExcessHet=1.5490;FS=1.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=0.534;SOR=0.884;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,65:125:99:1378,0,1428
chr3	53774625	rs57900500	GT	G	243.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.32;ReadPosRankSum=0.842;SOR=2.670;VQSLOD=4.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:36:93,0,36
chr3	53776857	rs2577329	C	G	450.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=0.291;SOR=1.402;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:117,0,139
chr3	53776872	rs2577328	T	G	591.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.68;ReadPosRankSum=0.241;SOR=1.136;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:106,0,218
chr3	53776995	rs2612026	T	C	2769.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=33;ExcessHet=3.9794;FS=4.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.324;SOR=0.380;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:575,0,520
chr3	53777176	rs2680648	T	C	6049.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=102;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=1.07;SOR=0.666;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,57:102:99:1514,0,1228
chr3	53778875	rs2253795	G	T	4676.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-02;DB;DP=108;ExcessHet=1.5490;FS=5.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=-3.800e-01;SOR=1.073;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,41:108:99:942,0,1753
chr3	53779580	rs2612024	G	C	1468.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.335e+00;DB;DP=17;ExcessHet=3.9794;FS=5.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=0.561;SOR=0.163;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:204,0,369
chr3	53780081	rs2680671	C	T	280.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.47;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:76:0|1:53780081_C_T:81,0,76:53780081
chr3	53780082	rs2577326	A	G	389.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.98;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:76:0|1:53780081_C_T:81,0,76:53780081
chr3	53796706	rs17252742	A	C	463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.845e+00;DB;DP=32;ExcessHet=3.0103;FS=9.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.818;SOR=0.039;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:472,0,494
chr3	53804801	rs2278518	C	T	691.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=3.9794;FS=2.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=0.126;SOR=0.160;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,9:10:8:305,0,8
chr3	53806803	rs2278517	G	C	5820.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=82;ExcessHet=3.9794;FS=1.713;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.22;ReadPosRankSum=0.283;SOR=0.843;VQSLOD=6.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1103,0,1121
chr3	53806817	rs35146621	G	A	4645.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066e+00;DB;DP=92;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=-2.970e-01;SOR=0.711;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1183,0,1231
chr3	53807148	rs2278516	C	T	1567.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=-1.140e+00;SOR=0.869;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:173,0,273
chr3	53814197	rs1829423	G	A	3386.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.570e-01;DB;DP=45;ExcessHet=3.9794;FS=0.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=-9.700e-02;SOR=0.825;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,24:45:99:611,0,533
chr3	53815865	rs11707420	G	A	760.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.830e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=0.542;SOR=1.688;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:251,0,135
chr3	53856050	rs6445606	C	T	48.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=-6.740e-01;SOR=0.446;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:55:55,0,100
chr3	53856653	rs2241808	C	T	5693.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=132;ExcessHet=6.9897;FS=0.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.798;SOR=0.662;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,71:132:99:1881,0,1378
chr3	53857158	rs2241807	C	T	344.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.9794;FS=3.245;MQ=59.90;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=-7.230e-01;SOR=0.072;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:50:50,0,82
chr3	53857574	rs147149221	G	A	1264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DB;DP=97;ExcessHet=3.0103;FS=2.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.974;SOR=0.446;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1273,0,1261
chr3	53857803	rs12676	A	C	8047.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=225;ExcessHet=6.9897;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-3.670e-01;SOR=0.622;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,107:225:99:2636,0,3034
chr3	53858164	rs2276838	C	T	1033.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.838;SOR=0.495;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:499,0,359
chr3	53880789	rs2232332	A	G	12873.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=1.929;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3645,345,0
chr3	53882661	rs2232333	A	G	3815.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=119;ExcessHet=3.9794;FS=0.951;MQ=60.00;MQRankSum=0.00;QD=14.67;ReadPosRankSum=0.846;SOR=0.620;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,62:119:99:1573,0,2151
chr3	53882663	rs1025690	G	A	5681.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=118;ExcessHet=3.9794;FS=0.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.176;SOR=0.755;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,57:118:99:1284,0,2416
chr3	53882673	rs5849009	G	GT	10136.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.00;SOR=0.762;VQSLOD=5.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3231,313,0
chr3	53882903	rs2276839	G	C	367.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=-7.120e-01;SOR=0.188;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:67:67,0,163
chr3	53883546	rs5849010	C	CA	627.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=2.985;VQSLOD=6.34;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:15:1|1:53883546_C_CA:191,15,0:53883546
chr3	53883558	rs3832251	T	TA	715.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=5.892;VQSLOD=6.21;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:53883546_C_CA:247,21,0:53883546
chr3	53883722	rs1025689	C	G	2627.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=1.68;SOR=0.730;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,17:38:99:442,0,530
chr3	53883910	rs4687751	C	T	1119.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=1.24;SOR=0.846;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:335,0,165
chr3	53910919	rs11419180	G	GT	1990.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=28.44;SOR=3.912;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,21:21:63:598,63,0
chr3	54157070	rs13095161	C	G	144.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.30;SOR=3.258;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr3	54157710	rs2290132	A	T	1581.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=2.352;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1598,141,0
chr3	54354510	rs9879885	T	C	5260.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=82;ExcessHet=3.9794;FS=10.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=0.365;SOR=0.332;VQSLOD=19.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1150,0,925
chr3	54401650	rs1868506	C	A	2916.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=76;ExcessHet=6.9897;FS=1.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.107;SOR=0.831;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,29:76:99:727,0,1120
chr3	54401666	rs1868507	G	A	2880.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596e+00;DB;DP=75;ExcessHet=6.9897;FS=2.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.435;SOR=0.884;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,29:75:99:694,0,1193
chr3	54401858	rs77711342	C	T	243.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-8.180e-01;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:252,0,180
chr3	54419704	rs9835975	G	A	377.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.21;SOR=3.258;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:305,24,0
chr3	54419977	rs9836159	C	T	591.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-02;DB;DP=44;ExcessHet=3.9794;FS=1.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.58;ReadPosRankSum=2.68;SOR=0.443;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:439,0,663
chr3	54420721	rs3028846	GT	G	1114.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290e-01;DB;DP=38;ExcessHet=3.9794;FS=2.302;MQ=59.78;MQRankSum=-2.830e-01;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-9.600e-02;SOR=0.503;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,9:38:99:118,0,456
chr3	54596815	rs9814659	T	C	3081.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.89;DB;DP=119;ExcessHet=3.9794;FS=3.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.564;SOR=0.864;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,58:119:99:1476,0,1410
chr3	54604188	rs2251788	T	C	2283.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061e+00;DB;DP=40;ExcessHet=6.9897;FS=10.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=-7.530e-01;SOR=1.889;VQSLOD=17.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,16:40:99:423,0,684
chr3	54615971	rs6782115	A	G	928.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;DB;DP=50;ExcessHet=3.9794;FS=3.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.438;SOR=0.377;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:547,0,676
chr3	54676441	rs3832224	CA	C	5120.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=31.61;SOR=3.967;VQSLOD=6.57;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1498,141,0
chr3	54798258	rs3732748	G	A	2195.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DB;DP=184;ExcessHet=3.0103;FS=3.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-6.780e-01;SOR=0.944;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,85:184:99:2204,0,2491
chr3	54871014	rs2694105	C	G	348.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=2.29;SOR=0.914;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:55:275,0,55
chr3	54905767	rs3836394	AG	A	879.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630e-01;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=-2.820e-01;SOR=1.662;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:240,0,202
chr3	54905806	rs3836393	G	GTTT	845.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.86;ReadPosRankSum=-1.680e-01;SOR=0.323;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:99:243,0,132
chr3	54913354	rs35536476	CT	C	3619.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.290e-01;DB;DP=99;ExcessHet=3.9794;FS=0.590;MQ=59.98;MQRankSum=0.00;QD=16.92;ReadPosRankSum=0.321;SOR=0.779;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:7,87:99:99:2144,112,0
chr3	54913609	rs78258914	G	C	269.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=35;ExcessHet=3.0103;FS=1.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.69;ReadPosRankSum=-1.637e+00;SOR=1.314;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,11:35:99:278,0,752
chr3	54919272	rs1405330	A	G	6546.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=66;ExcessHet=3.0103;FS=1.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-9.580e-01;SOR=0.537;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2045,198,0
chr3	54922405	rs2970534	G	A	768.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=4.514;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr3	54928327	rs11130438	C	T	429.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.06;ReadPosRankSum=0.842;SOR=2.833;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr3	54928496	rs1526595	T	C	4902.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;DB;DP=53;ExcessHet=3.0103;FS=1.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=0.208;SOR=0.872;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1802,159,0
chr3	54952348	rs60257399	CT	C	911.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=28;ExcessHet=3.9794;FS=1.081;MQ=59.40;MQRankSum=0.544;QD=15.20;ReadPosRankSum=1.47;SOR=0.937;VQSLOD=0.489;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:83:733,83,0
chr3	54952359	.	CTTTTTT	CTT,C	979.03	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.394;DP=27;ExcessHet=1.5490;FS=0.000;MQ=59.36;MQRankSum=-4.250e-01;QD=26.46;ReadPosRankSum=0.626;SOR=0.578;VQSLOD=0.549;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,17,5:27:99:766,122,99,384,0,459
chr3	54953022	rs3832225	CTT	C	2193.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=22;ExcessHet=3.9794;FS=8.094;MQ=60.00;MQRankSum=0.00;QD=24.11;ReadPosRankSum=1.14;SOR=2.055;VQSLOD=4.05;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,22:22:66:835,66,0
chr3	54961949	rs4245920	C	T	6006.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.415e+00;DB;DP=53;ExcessHet=3.0103;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=-8.020e-01;SOR=0.636;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1675,159,0
chr3	54962013	rs56327704	A	C	3607.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=-6.110e-01;SOR=0.734;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1088,102,0
chr3	55003733	rs881820	G	T	3239.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.262;DB;DP=77;ExcessHet=1.5490;FS=1.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=0.238;SOR=0.885;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2287,231,0
chr3	55003992	rs113492437	T	TA	454.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.385;DB;DP=12;ExcessHet=3.9794;FS=3.076;MQ=60.00;MQRankSum=0.00;QD=10.83;ReadPosRankSum=1.16;SOR=0.126;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,11:12:10:261,10,0
chr3	55038898	rs4955827	A	G	8656.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=1.609;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2610,254,0
chr3	55038998	rs56926640	TA	T	73.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=27;ExcessHet=3.9794;FS=3.427;MQ=59.81;MQRankSum=0.624;POSITIVE_TRAIN_SITE;QD=1.53;ReadPosRankSum=-6.680e-01;SOR=0.223;VQSLOD=0.418;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,4:27:25:25,0,462
chr3	55043613	rs3773570	G	C	1108.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.77;DB;DP=8;ExcessHet=3.9794;FS=5.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.18;ReadPosRankSum=2.02;SOR=3.545;VQSLOD=15.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:342,24,0
chr3	55108055	rs358076	G	A	3442.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.76;DB;DP=44;ExcessHet=3.9794;FS=4.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=-1.318e+00;SOR=1.041;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1629,132,0
chr3	55504730	rs7622120	A	G	5787.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.182e+00;DB;DP=58;ExcessHet=3.0103;FS=7.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=1.80;SOR=0.264;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1926,133,0
chr3	55514766	rs73075443	A	T	647.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=-3.230e-01;SOR=0.495;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:229,0,316
chr3	55520778	rs566926	T	G	596.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.95;DB;DP=10;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=0.00;SOR=2.200;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
chr3	55733390	rs4955865	C	T	1873.64	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.551e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.29;ReadPosRankSum=-8.040e-01;SOR=3.690;VQSLOD=16.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:759,60,0
chr3	55768688	rs815451	G	C	537.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.55;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=-1.080e-01;SOR=0.582;VQSLOD=3.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:219,0,145
chr3	55922702	rs140863223	G	A	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.320e-01;DB;DP=39;ExcessHet=3.0103;FS=1.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-1.690e+00;SOR=0.299;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,15:39:99:396,0,821
chr3	55989276	.	TTGTGTGTGTGTGTG	TTG,T	2394.20	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.68;POSITIVE_TRAIN_SITE;QD=31.34;SOR=3.258;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,19,6:25:99:1020,178,102,604,0,553
chr3	56019805	rs6806267	T	C	932.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=3;ExcessHet=3.9794;FS=10.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=0.760;SOR=4.255;VQSLOD=12.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:1:74,0,1
chr3	56019905	rs6445762	C	A	1817.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-01;DB;DP=37;ExcessHet=3.9794;FS=4.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.410;SOR=0.376;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:445,0,494
chr3	56020159	rs7613818	G	A	365.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.978;SOR=0.580;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:23:23,0,199
chr3	56037025	rs5849124	C	CAT	6556.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=66;ExcessHet=3.9794;FS=0.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.14;ReadPosRankSum=0.316;SOR=0.627;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,36:66:99:1509,0,1183
chr3	56037241	rs35658351	CA	C	6569.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=3.352;VQSLOD=6.79;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:56037241_CA_C:2287,157,0:56037241
chr3	56037249	rs34984094	A	AG	6585.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.06;SOR=3.675;VQSLOD=5.30;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,49:49:99:1|1:56037241_CA_C:2263,154,0:56037241
chr3	56591065	rs62255964	A	C	574.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.38;ReadPosRankSum=1.11;SOR=4.174;VQSLOD=12.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:194,15,0
chr3	56591178	rs73079891	A	G	1557.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.15;DB;DP=50;ExcessHet=1.5490;FS=7.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=0.863;SOR=1.680;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,16:50:99:491,0,823
chr3	56591278	rs150150392	T	TGGGGTAAGCA	11613.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.46;ReadPosRankSum=0.279;SOR=1.078;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,117:119:99:3684,317,0
chr3	56591508	rs73079894	C	A	966.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=-9.100e-01;SOR=1.127;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:207,0,309
chr3	56593543	rs12486047	C	A	3851.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=2.053;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:951,90,0
chr3	56593680	rs11130525	T	C	6289.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=1.040;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1649,161,0
chr3	56593893	rs11130526	T	C	367.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=4.977;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:140,12,0
chr3	56594735	rs9822876	G	A	1665.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.82;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.00;ReadPosRankSum=1.46;SOR=3.398;VQSLOD=0.167;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:235,0,213
chr3	56595153	rs17825529	T	C	590.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.85;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=1.62;SOR=0.527;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:599,0,478
chr3	56597688	rs6781293	A	G	977.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=25;ExcessHet=1.5490;FS=3.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=-2.040e-01;SOR=1.473;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:239,0,712
chr3	56597693	rs71309962	G	C	434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=27;ExcessHet=3.0103;FS=6.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.849;SOR=0.105;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,18:27:99:443,0,310
chr3	56597954	rs6769055	C	T	9034.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=1.239;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2796,243,0
chr3	56599159	rs73081810	T	C	4515.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.755;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-2.039e+00;SOR=1.007;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,64:66:99:1816,148,0
chr3	56599208	rs55831745	G	C	3765.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=45;ExcessHet=0.4576;FS=3.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.03;ReadPosRankSum=0.496;SOR=2.261;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,43:45:86:1470,86,0
chr3	56599258	rs10687224	G	GTATT	3181.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=3.105;VQSLOD=5.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:765,51,0
chr3	56599327	rs6799086	G	A	248.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.19;SOR=2.584;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:177,15,0
chr3	56600531	rs10865997	G	A	893.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.72;SOR=6.358;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:316,24,0
chr3	56601175	rs112310084	T	C	1072.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.12;SOR=2.621;VQSLOD=18.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:345,27,0
chr3	56603634	.	A	G	51.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DP=10;ExcessHet=3.0103;FS=0.000;MQ=55.86;MQRankSum=-2.287e+00;NEGATIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=0.493;SOR=0.169;VQSLOD=-3.364e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:56603634_A_G:60,0,309:56603634
chr3	56603639	.	G	A	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550e-01;DP=9;ExcessHet=3.0103;FS=0.000;MQ=55.30;MQRankSum=-2.200e+00;NEGATIVE_TRAIN_SITE;QD=6.03;ReadPosRankSum=0.282;SOR=0.022;VQSLOD=-3.038e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:56603634_A_G:63,0,288:56603634
chr3	56603719	rs73081823	C	T	147.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.33;SOR=3.258;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	56605404	rs139586078	TA	T	729.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.07;SOR=5.283;VQSLOD=6.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:113,12,0
chr3	56606599	rs151186908	G	GCCTTCATTTCTTTTTTACATTTA	2251.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.22;SOR=7.903;VQSLOD=7.46;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,17:17:51:747,51,0
chr3	56627048	rs1388256	A	G	5699.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.030;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1817,171,0
chr3	56627358	rs9985317	G	T	611.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=4.047;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr3	56627598	rs1491170	A	G	10975.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=0.821;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3340,358,0
chr3	56628031	rs7637449	G	A	5694.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.46;SOR=1.005;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2870,275,0
chr3	56628226	rs73081854	A	T	632.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=5.670;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
chr3	56674190	rs1489949	A	C	4896.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.24;SOR=1.836;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1283,119,0
chr3	56696634	.	CA	C	57.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-01;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.50;ReadPosRankSum=0.543;SOR=0.507;VQSLOD=5.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,3:14:38:38,0,248
chr3	56808956	rs34038168	A	AC	797.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.432;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=-9.350e-01;SOR=0.418;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:13:74:74,0,282
chr3	56835761	rs3732508	G	A	5675.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.690e-01;DB;DP=112;ExcessHet=6.9897;FS=1.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.173;SOR=0.603;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,50:112:99:1320,0,1699
chr3	56932708	rs7633179	G	A	4526.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.674e+00;DB;DP=59;ExcessHet=3.0103;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=-4.960e-01;SOR=0.490;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1843,177,0
chr3	57011075	rs9882789	A	G	250.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.35;SOR=0.818;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr3	57011234	rs13080107	T	C	2013.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.493;DB;DP=37;ExcessHet=3.9794;FS=3.329;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.297;SOR=1.003;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1122,111,0
chr3	57131529	rs6764188	A	C	14269.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.37;DB;DP=200;ExcessHet=3.0103;FS=3.527;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.92;ReadPosRankSum=-2.940e-01;SOR=1.102;VQSLOD=7.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,200:200:99:6637,600,0
chr3	57132200	rs2291462	A	G	10479.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=141;ExcessHet=3.0103;FS=2.252;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=1.15;SOR=0.483;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4611,423,0
chr3	57135518	rs2291461	C	G	2038.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=1.13;SOR=0.693;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:851,78,0
chr3	57137090	rs2247656	A	G	10231.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.25;DB;DP=134;ExcessHet=3.0103;FS=3.110;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-3.920e-01;SOR=0.983;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4061,401,0
chr3	57137461	rs1463657	C	A	1045.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.300e-02;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=0.081;SOR=0.420;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:444,39,0
chr3	57138419	rs6780995	G	A	6939.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=0.907;SOR=0.702;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2790,296,0
chr3	57139833	rs1545982	G	A	4523.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.863e+00;DB;DP=59;ExcessHet=3.0103;FS=0.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=-3.900e-01;SOR=0.824;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1816,177,0
chr3	57139972	rs1545981	A	G	7540.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.358e+00;DB;DP=130;ExcessHet=3.0103;FS=1.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=0.500;SOR=0.788;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3881,389,0
chr3	57140108	rs2035654	G	A	6722.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.109e+00;DB;DP=95;ExcessHet=3.0103;FS=2.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=0.095;SOR=0.516;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3048,283,0
chr3	57143376	rs9835455	T	C	524.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.78;ReadPosRankSum=-5.240e-01;SOR=2.712;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:208,18,0
chr3	57143995	rs6445856	A	G	484.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.62;SOR=2.985;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:219,18,0
chr3	57148968	rs11916303	C	A	1480.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.106e+00;DB;DP=13;ExcessHet=3.0103;FS=2.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=-5.620e-01;SOR=1.739;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:480,39,0
chr3	57203009	rs7641771	A	G	1653.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.54;DB;DP=15;ExcessHet=3.0103;FS=4.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.56;ReadPosRankSum=-5.760e-01;SOR=2.066;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:599,45,0
chr3	57203398	rs4299455	C	A	2394.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.282e+00;DB;DP=28;ExcessHet=3.0103;FS=4.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=-1.840e-01;SOR=0.232;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:954,84,0
chr3	57203501	rs4303841	C	T	589.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.08;ReadPosRankSum=0.414;SOR=2.200;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr3	57262133	.	G	C	60.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.05;ReadPosRankSum=-6.230e-01;SOR=0.307;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,155
chr3	57264872	rs6789847	T	C	215.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.37;ReadPosRankSum=0.589;SOR=0.693;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:98,0,61
chr3	57276258	rs11346575	GA	G	1775.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870e-01;DB;DP=54;ExcessHet=3.9794;FS=0.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-7.400e-01;SOR=0.615;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,30:54:99:755,0,558
chr3	57287890	.	CT	C	236.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DP=14;ExcessHet=6.9897;FS=6.388;MQ=59.83;MQRankSum=0.00;QD=6.97;ReadPosRankSum=-2.040e-01;SOR=0.077;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,4:14:72:72,0,114
chr3	57287950	rs3942261	G	A	93.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:102,0,110
chr3	57293297	rs925566	T	C	257.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.241;SOR=0.582;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:160,0,60
chr3	57294085	rs10510791	C	G	1277.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-7.490e-01;SOR=0.655;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:592,0,604
chr3	57294295	rs1533272	T	C	242.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.319;SOR=0.321;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:131,0,414
chr3	57294884	rs150865255	CAAATT	C	280.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.880;SOR=0.693;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:99:105,0,433
chr3	57314594	rs62251997	A	G	502.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.420e-01;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-9.100e-02;SOR=0.906;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:97:97,0,222
chr3	57317586	rs11130579	C	T	652.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.715e+00;DB;DP=25;ExcessHet=3.9794;FS=5.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-8.710e-01;SOR=1.802;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:374,0,412
chr3	57321916	rs883244	T	G	1251.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=27;ExcessHet=3.9794;FS=2.149;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=0.095;SOR=0.418;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:361,0,351
chr3	57323170	rs528035	A	G	2124.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.905e+00;DB;DP=59;ExcessHet=3.9794;FS=1.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.875;SOR=0.560;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,33:59:99:759,0,662
chr3	57328100	rs115894676	C	A	100.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:109,0,31
chr3	57335691	rs62252001	T	A	626.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.680e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.05;ReadPosRankSum=1.00;SOR=0.627;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,15:25:99:0|1:57335691_T_A:635,0,406:57335691
chr3	57335705	rs57748737	TACACACAC	TACAC,T	3946.21	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.40;POSITIVE_TRAIN_SITE;QD=35.92;SOR=3.056;VQSLOD=6.12;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,15,19:34:99:1365,798,752,578,0,789
chr3	57335747	rs4681970	C	T	966.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.489e+00;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=59.43;MQRankSum=1.45;QD=16.66;ReadPosRankSum=0.863;SOR=0.857;VQSLOD=-3.880e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,29:58:99:0|1:57335691_T_A:975,0,963:57335691
chr3	57335876	rs4060726	C	T	2308.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=83;ExcessHet=3.9794;FS=1.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=1.13;SOR=0.585;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,49:83:99:1225,0,697
chr3	57348685	rs150487595	GA	G	94.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.967;SOR=1.329;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:43:103,0,43
chr3	57388114	rs6445873	C	T	997.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=80;ExcessHet=3.0103;FS=1.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.901;SOR=0.997;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,38:80:99:1006,0,1027
chr3	57391284	rs372272200	GTTCA	G	289.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=0.842;SOR=0.392;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,238
chr3	57394309	rs4681729	T	G	168.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329e+00;DB;DP=33;ExcessHet=3.0103;FS=6.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.10;ReadPosRankSum=-1.078e+00;SOR=0.116;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,10:33:99:177,0,706
chr3	57394398	rs4681730	G	A	102.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:111,0,106
chr3	57404880	rs9870672	C	T	327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.217e+00;SOR=0.636;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:336,0,532
chr3	57404995	rs9870842	C	T	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DB;DP=71;ExcessHet=3.0103;FS=3.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=0.046;SOR=0.855;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,32:71:99:733,0,926
chr3	57405347	rs9833502	A	T	280.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.176e+00;DB;DP=23;ExcessHet=3.0103;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.378;SOR=0.330;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:289,0,236
chr3	57411006	rs75662476	ACT	A	63.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-4.310e-01;SOR=0.307;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,164
chr3	57414071	rs4681982	G	A	685.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-4.700e-02;SOR=0.850;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:694,0,678
chr3	57414097	rs17793014	T	A	2955.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DB;DP=79;ExcessHet=6.9897;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-6.880e-01;SOR=0.641;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,43:79:99:1132,0,947
chr3	57414200	rs4681732	T	A	1367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=135;ExcessHet=3.0103;FS=1.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.13;ReadPosRankSum=0.568;SOR=0.756;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,57:135:99:1376,0,1857
chr3	57414330	rs11915740	C	A	2395.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-02;DB;DP=52;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.250;SOR=0.720;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,22:52:99:681,0,908
chr3	57419497	rs6773904	C	T	2438.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890e-01;DB;DP=72;ExcessHet=3.9794;FS=2.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-5.060e-01;SOR=0.927;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,44:72:99:1269,0,784
chr3	57422824	rs4234394	A	G	852.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;DB;DP=18;ExcessHet=3.9794;FS=6.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.178;SOR=0.214;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:241,0,274
chr3	57430988	rs6768943	G	A	1576.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=76;ExcessHet=3.9794;FS=0.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=1.98;SOR=0.808;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,29:76:99:705,0,1130
chr3	57431275	rs11427137	A	AT	63.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:45:72,0,45
chr3	57431740	rs139063171	ATAAATAAATAAT	A	1988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=23;ExcessHet=3.9794;FS=3.787;MQ=60.00;MQRankSum=0.00;QD=22.09;ReadPosRankSum=2.21;SOR=0.303;VQSLOD=5.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,16:23:99:583,0,202
chr3	57431985	rs2121743	G	A	1513.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.38;SOR=0.662;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:654,0,797
chr3	57432064	rs2121742	C	T	777.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.740e-01;DB;DP=21;ExcessHet=3.9794;FS=1.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.63;SOR=1.085;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:314,0,405
chr3	57443817	rs6768661	T	C	5084.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=123;ExcessHet=6.9897;FS=1.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-1.700e-01;SOR=0.799;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,57:123:99:1454,0,1490
chr3	57456371	rs9871422	T	C	1289.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=27;ExcessHet=6.9897;FS=4.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-4.710e-01;SOR=0.357;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:374,0,327
chr3	57457123	rs6445886	C	T	1037.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-1.480e-01;SOR=0.784;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,6:29:99:125,0,608
chr3	57469053	rs9826084	A	C	2604.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=53;ExcessHet=6.9897;FS=6.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=1.28;SOR=1.405;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,28:53:99:835,0,641
chr3	57469097	rs9863860	C	T	3739.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=77;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.314;SOR=0.675;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1074,0,960
chr3	57469272	rs9864150	C	T	2718.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.445e+00;DB;DP=65;ExcessHet=6.9897;FS=4.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-6.320e-01;SOR=0.402;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,41:65:99:1169,0,681
chr3	57469348	rs35624030	A	AT	597.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=1.04;SOR=0.941;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:191,0,386
chr3	57469357	rs10510792	G	T	265.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.291e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=-1.594e+00;SOR=0.446;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:274,0,183
chr3	57475351	rs6806444	T	G	2523.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720e-01;DB;DP=59;ExcessHet=6.9897;FS=1.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-6.390e-01;SOR=0.875;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,32:59:99:777,0,699
chr3	57488279	rs10662782	T	TTTC	1042.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=17;ExcessHet=6.9897;FS=4.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=-2.810e-01;SOR=0.138;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:281,0,398
chr3	57489591	rs4681992	C	A	202.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=1.01;SOR=0.859;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:72:73,0,72
chr3	57493989	rs13072470	T	A	377.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.9794;FS=4.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=1.50;SOR=2.546;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,144
chr3	57494433	rs79294353	A	C	72.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:81,0,32
chr3	57509103	rs6768974	T	C	373.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=1.5490;FS=6.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.135;SOR=2.891;VQSLOD=17.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:293,24,0
chr3	57542173	rs2241988	C	T	3642.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=75;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=-1.920e-01;SOR=0.648;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2340,225,0
chr3	57543614	rs2278755	T	C	219.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.20;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.371;SOR=0.399;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	57561032	rs11294059	CA	C	270.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.58;SOR=4.977;VQSLOD=4.90;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:78,9,0
chr3	57561598	rs6808217	A	G	5893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=0.987;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1428,132,0
chr3	57582718	rs57877028	GAAA	G	3817.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=52;ExcessHet=1.5490;FS=8.522;MQ=60.00;MQRankSum=0.00;QD=30.30;ReadPosRankSum=-1.180e+00;SOR=1.638;VQSLOD=3.72;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2315,157,0
chr3	57615975	rs138592097	TTATC	T	272.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.380e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=-7.000e-01;SOR=1.022;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	57627500	rs9873675	T	C	4458.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=2.604;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1027,81,0
chr3	57627580	rs9816093	A	C	1529.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.29;SOR=7.223;VQSLOD=24.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr3	57646329	rs6445918	T	G	716.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.75;SOR=2.531;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr3	57658207	rs115183518	A	T	139.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-3.280e-01;SOR=0.223;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:97:148,0,97
chr3	57743246	rs1053711	G	A	60.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:69,0,36
chr3	57857439	rs111294347	A	G	1233.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990e-01;DB;DP=71;ExcessHet=3.0103;FS=0.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=1.02;SOR=0.486;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,49:71:99:1242,0,458
chr3	57882601	rs17058639	C	T	946.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.569;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-1.910e-01;SOR=0.686;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,21:55:99:492,0,872
chr3	57893507	rs9864975	A	G	414.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=0.204;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:199,0,23
chr3	57894043	rs4681764	T	C	131.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr3	57912865	rs75226124	C	CA	440.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.34;ReadPosRankSum=0.165;SOR=1.051;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:263,0,114
chr3	57994719	rs1658338	T	A	12775.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.453e+00;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.01;ReadPosRankSum=-9.770e-01;SOR=0.937;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4793,390,0
chr3	58080505	rs7644723	G	T	1826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=46;ExcessHet=6.9897;FS=3.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.223;SOR=1.175;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,19:46:99:548,0,754
chr3	58081888	rs1522384	T	C	3931.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DB;DP=85;ExcessHet=6.9897;FS=3.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-4.800e-01;SOR=0.535;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,51:85:99:1353,0,774
chr3	58083446	rs939882	G	A	3236.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.420e-01;DB;DP=88;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.552;SOR=0.718;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,33:88:99:738,0,1422
chr3	58084795	rs3732638	A	G	820.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061e+00;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-9.040e-01;SOR=0.534;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:241,0,366
chr3	58088102	rs74824935	G	A	1244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.140e-01;DB;DP=102;ExcessHet=3.0103;FS=2.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.033;SOR=0.963;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,50:102:99:1253,0,1364
chr3	58089516	rs6445945	A	G	1605.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=19;ExcessHet=3.9794;FS=4.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=1.97;SOR=1.938;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:470,0,203
chr3	58089585	rs6445946	T	A	1216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193e+00;DB;DP=56;ExcessHet=3.9794;FS=1.834;MQ=59.88;MQRankSum=1.19;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.907;SOR=0.972;VQSLOD=2.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,32:56:99:889,0,635
chr3	58089877	rs1522386	A	G	2394.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.860e-01;DB;DP=38;ExcessHet=3.9794;FS=1.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=1.37;SOR=0.521;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:557,0,485
chr3	58092204	rs76136188	A	T	484.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097e+00;DB;DP=11;ExcessHet=3.9794;FS=5.050;MQ=60.00;MQRankSum=0.00;QD=11.53;ReadPosRankSum=2.66;SOR=0.105;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:51:0|1:58092204_A_T:51,0,914:58092204
chr3	58092206	rs9816780	A	T	478.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=13;ExcessHet=3.9794;FS=4.480;MQ=60.00;MQRankSum=0.00;QD=10.62;ReadPosRankSum=2.82;SOR=0.158;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,2:13:48:0|1:58092204_A_T:48,0,935:58092204
chr3	58092208	rs2686631	A	T	665.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e-01;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.92;ReadPosRankSum=1.92;SOR=0.569;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:58092204_A_T:48,0,935:58092204
chr3	58094157	rs2259091	A	G	1727.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110e-01;DB;DP=67;ExcessHet=3.9794;FS=2.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=2.03;SOR=0.529;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,36:67:99:931,0,801
chr3	58094852	rs7634236	C	T	3493.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DB;DP=155;ExcessHet=3.9794;FS=1.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=1.06;SOR=0.847;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,70:155:99:1865,0,2217
chr3	58095466	rs2708318	G	T	3041.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=88;ExcessHet=3.9794;FS=4.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=1.41;SOR=0.423;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,52:88:99:1429,0,980
chr3	58095500	rs2686635	G	T	2158.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.249e+00;DB;DP=58;ExcessHet=3.9794;FS=6.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=8.000e-03;SOR=0.327;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,30:58:99:831,0,849
chr3	58109162	rs1131356	G	A	4761.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=176;ExcessHet=3.9794;FS=2.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=1.03;SOR=0.831;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,92:176:99:2327,0,1992
chr3	58109430	rs11313721	TA	T	239.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=10;ExcessHet=6.9897;FS=5.295;MQ=59.40;MQRankSum=-8.420e-01;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=0.158;SOR=1.688;VQSLOD=0.093;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:50:50,0,90
chr3	58111285	rs3732633	T	G	3409.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.11;DB;DP=109;ExcessHet=3.9794;FS=1.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.302;SOR=0.572;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,60:109:99:1772,0,1152
chr3	58111761	rs4681798	G	A	166.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.823;DB;DP=8;ExcessHet=3.0103;FS=9.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=1.61;SOR=3.596;VQSLOD=12.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:69:174,0,69
chr3	58112251	rs12495232	A	G	579.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.17;ReadPosRankSum=0.984;SOR=0.301;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:349,0,139
chr3	58112440	rs2362903	A	G	2461.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=76;ExcessHet=1.5490;FS=2.373;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=0.446;SOR=0.925;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,33:76:99:841,0,1035
chr3	58112488	rs2362904	C	T	1124.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.03;SOR=0.678;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,26:57:99:673,0,735
chr3	58112556	rs2362905	G	C	813.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=25;ExcessHet=3.9794;FS=1.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=2.21;SOR=0.941;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:374,0,386
chr3	58116316	rs1573890	A	G	522.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.131;SOR=2.303;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:101,0,176
chr3	58116358	rs4475005	C	T	689.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=20;ExcessHet=3.9794;FS=1.786;MQ=60.00;MQRankSum=0.00;QD=16.81;ReadPosRankSum=1.70;SOR=1.410;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:236,0,365
chr3	58116369	rs1882692	T	C	814.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=25;ExcessHet=3.9794;FS=1.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.567;SOR=1.121;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:270,0,402
chr3	58117375	rs4254629	T	G	107.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:115,0,65
chr3	58118555	rs12632456	G	A	2078.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=69;ExcessHet=3.9794;FS=0.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-9.830e-01;SOR=0.775;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,46:69:99:1239,0,517
chr3	58118700	rs12638356	A	G	986.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;DB;DP=29;ExcessHet=3.9794;FS=3.483;MQ=60.00;MQRankSum=0.00;QD=13.15;ReadPosRankSum=0.480;SOR=1.179;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,19:29:99:533,0,227
chr3	58121626	rs6445948	T	A	1291.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.615e+00;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.76;ReadPosRankSum=0.661;SOR=1.329;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:493,0,183
chr3	58134505	rs62621996	A	G	2533.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=216;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.153;SOR=0.700;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,96:216:99:2542,0,2916
chr3	58145263	rs12634123	G	A	2867.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.917e+00;DB;DP=55;ExcessHet=1.5490;FS=3.239;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=1.59;SOR=0.368;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:901,0,607
chr3	58154327	rs8640	C	T	1343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=46;ExcessHet=3.9794;FS=8.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=1.26;SOR=1.493;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:628,0,568
chr3	58155557	.	A	T	419.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DP=8;ExcessHet=6.9897;FS=12.159;MQ=59.52;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=1.35;SOR=3.912;VQSLOD=-2.972e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:6:6,0,146
chr3	58156176	rs4681660	G	A	3373.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=70;ExcessHet=1.5490;FS=0.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=1.04;SOR=0.592;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,34:70:99:918,0,910
chr3	58178802	rs11289117	CT	C	75.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=58.21;POSITIVE_TRAIN_SITE;QD=25.07;SOR=0.693;VQSLOD=5.62;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,1:1:3:22,3,0
chr3	58179028	rs3732630	T	C	696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039e+00;DB;DP=59;ExcessHet=3.0103;FS=1.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-6.800e-02;SOR=0.447;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,28:59:99:705,0,852
chr3	58179318	rs9812109	C	T	585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=-5.660e-01;SOR=0.976;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:178,0,109
chr3	58186911	rs4234389	A	G	2720.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.510e-01;DB;DP=71;ExcessHet=6.9897;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-2.450e-01;SOR=0.792;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,28:71:99:754,0,1104
chr3	58191266	rs2070117	C	T	813.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=87;ExcessHet=3.0103;FS=2.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-8.500e-01;SOR=0.678;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,32:87:99:822,0,1420
chr3	58191433	rs9311671	G	A	1181.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=0.351;SOR=0.736;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:514,0,511
chr3	58270963	rs6774235	T	C	4528.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=60;ExcessHet=3.9794;FS=3.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=-8.800e-01;SOR=1.016;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,34:60:99:993,0,680
chr3	58295934	rs144199276	AAAAC	A	1235.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=18;ExcessHet=3.9794;FS=2.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.12;ReadPosRankSum=-2.130e-01;SOR=0.361;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,14:18:99:550,0,183
chr3	58296209	rs59232688	CT	C	1665.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.870e-01;DB;DP=58;ExcessHet=3.9794;FS=1.170;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-1.000e-02;SOR=0.589;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,27:58:99:578,0,632
chr3	58302404	rs2292674	A	T	699.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.00;SOR=0.657;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:299,0,273
chr3	58303069	rs3773012	C	T	1224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=109;ExcessHet=3.0103;FS=0.737;MQ=59.89;MQRankSum=-1.130e+00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-5.880e-01;SOR=0.845;VQSLOD=2.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:62,47:109:99:1233,0,1567
chr3	58304112	rs1135089	C	T	70.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=2.303;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	58355273	rs9867320	G	C	5746.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=0.4576;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=30.73;SOR=1.648;VQSLOD=5.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2880,297,0
chr3	58368219	.	C	CT	434.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DP=18;ExcessHet=6.9897;FS=1.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.50;ReadPosRankSum=0.680;SOR=0.931;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:18:96:157,0,96
chr3	58368449	rs11917591	T	C	934.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e-01;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.367;SOR=0.756;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:425,0,641
chr3	58368646	rs11921259	A	G	226.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.34;ReadPosRankSum=-3.190e-01;SOR=1.179;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:112,0,29
chr3	58376190	rs62258099	T	C	413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.32;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-9.530e-01;SOR=0.404;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:422,0,525
chr3	58376639	rs4390943	C	A	360.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=0.892;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	58376992	rs11923253	G	A	927.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=1.29;SOR=0.722;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,15:53:99:338,0,964
chr3	58377159	rs11915480	A	G	235.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.231;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:58:58,0,101
chr3	58377231	rs10691351	C	CA	504.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=-3.190e-01;SOR=0.859;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:16:68,0,16
chr3	58380569	rs11923181	A	C	971.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=17;ExcessHet=3.9794;FS=2.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-1.740e+00;SOR=0.189;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:425,0,159
chr3	58381120	rs4553989	T	A	222.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=0.693;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr3	58381180	rs4553990	T	A	103.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=0.189;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:112,0,104
chr3	58381262	rs62258105	C	T	339.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-02;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-1.572e+00;SOR=0.573;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:348,0,311
chr3	58382846	rs3191903	C	T	1462.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e+00;DB;DP=67;ExcessHet=3.9794;FS=3.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=-3.230e-01;SOR=0.442;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,32:67:99:713,0,976
chr3	58383174	rs55692656	A	T	569.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=40;ExcessHet=3.9794;FS=2.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=0.426;SOR=1.138;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,14:40:99:431,0,737
chr3	58383788	rs3922713	C	T	121.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=1.609;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:135,12,0
chr3	58384775	rs11712139	G	A	313.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.819;SOR=0.495;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:108,0,187
chr3	58384995	rs11712213	G	A	2813.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DB;DP=131;ExcessHet=3.9794;FS=3.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.102;SOR=0.724;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,59:131:99:1425,0,1826
chr3	58385194	rs4075152	T	C	2852.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.38;SOR=2.720;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1472,123,0
chr3	58389462	rs4339119	A	G	569.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=40;ExcessHet=3.9794;FS=2.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=2.37;SOR=0.375;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,12:40:99:283,0,689
chr3	58394850	rs56232415	C	T	1206.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=42;ExcessHet=3.9794;FS=2.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.381;SOR=0.475;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,15:42:99:292,0,787
chr3	58395490	rs140856155	G	GT	4249.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.14;SOR=1.973;VQSLOD=6.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2247,225,0
chr3	58395501	rs34734687	G	GA	3259.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=1.757;VQSLOD=5.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1605,171,0
chr3	58395863	rs56384862	A	G	2981.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=111;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-1.860e-01;SOR=0.730;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,52:111:99:1227,0,1458
chr3	58398318	rs62258133	C	G	151.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.967;SOR=0.307;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:116,0,101
chr3	58398447	rs62258134	C	T	584.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=16;ExcessHet=3.9794;FS=3.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=0.950;SOR=1.730;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:205,0,216
chr3	58398466	rs12635366	C	T	1583.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.70;SOR=1.981;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:755,63,0
chr3	58398813	rs13071422	A	G	1386.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.26;SOR=4.235;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
chr3	58409063	rs12631656	T	C	199.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730e-01;DB;DP=22;ExcessHet=3.0103;FS=2.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=1.68;SOR=1.670;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:208,0,376
chr3	58409082	rs12634132	A	G	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=28;ExcessHet=3.0103;FS=9.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-5.580e-01;SOR=3.258;VQSLOD=13.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:363,0,442
chr3	58409126	rs6767498	C	A	2571.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.572e+00;DB;DP=63;ExcessHet=1.5490;FS=5.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=0.076;SOR=0.298;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,36:63:99:899,0,836
chr3	58409300	rs35853090	G	GTT	3402.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=84;ExcessHet=3.9794;FS=4.347;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=0.104;SOR=1.050;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,35:84:99:1281,0,1984
chr3	58410431	rs11714515	A	G	374.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065e+00;DB;DP=11;ExcessHet=1.5490;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=-2.630e-01;SOR=2.985;VQSLOD=18.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:127,0,210
chr3	58410554	rs34579268	C	T	1081.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580e-01;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.296;SOR=0.699;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:560,0,795
chr3	58413662	rs7230	G	A	235.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,7:13:99:0|1:58413662_G_A:244,0,231:58413662
chr3	58413669	rs4228	G	T	388.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.93;ReadPosRankSum=0.384;SOR=0.693;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,7:14:99:1|0:58413662_G_A:220,0,273:58413662
chr3	58414382	rs62259769	C	T	453.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358e+00;DB;DP=24;ExcessHet=3.0103;FS=1.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=-1.562e+00;SOR=0.352;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,16:24:99:462,0,246
chr3	58415590	rs2070662	C	A	3327.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=0.914;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1586,141,0
chr3	58416535	rs1126551	C	T	2799.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273e+00;DB;DP=98;ExcessHet=3.9794;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-3.400e-02;SOR=0.741;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,63:98:99:0|1:58416535_C_T:1685,0,922:58416535
chr3	58416538	rs4264746	T	C	11200.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.31;SOR=0.997;VQSLOD=18.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,101:101:99:1|1:58416535_C_T:4049,306,0:58416535
chr3	58417416	rs62259772	C	T	1069.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;DB;DP=37;ExcessHet=3.9794;FS=4.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-9.100e-02;SOR=1.270;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:535,0,394
chr3	58496562	rs28394068	A	G	823.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=6.091;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:267,21,0
chr3	58503340	rs4544632	T	G	294.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.32;SOR=1.179;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chr3	58520306	rs7611026	G	C	5365.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.19;DB;DP=53;ExcessHet=3.0103;FS=0.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=-2.490e-01;SOR=0.585;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1818,159,0
chr3	58520859	rs4681862	A	G	4250.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.75;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=0.669;SOR=0.678;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1730,156,0
chr3	58552950	rs1139701	C	T	1807.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.379e+00;DB;DP=129;ExcessHet=3.0103;FS=5.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.300;SOR=1.180;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,70:129:99:1816,0,1517
chr3	58553209	rs12486363	A	G	696.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.360e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=0.257;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:498,36,0
chr3	58572295	rs10866021	A	G	2096.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.69;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=0.239;SOR=0.733;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1044,75,0
chr3	58575110	rs6445991	A	G	2498.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.522;DB;DP=46;ExcessHet=3.9794;FS=0.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=1.05;SOR=0.574;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1460,137,0
chr3	58612424	rs1552306	T	C	1237.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.40;SOR=6.994;VQSLOD=23.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:362,30,0
chr3	58612485	rs11708352	G	A	1246.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.62;DB;DP=33;ExcessHet=3.9794;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=0.745;SOR=2.636;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,22:33:99:793,0,284
chr3	58612598	rs11708342	C	T	3276.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540e-01;DB;DP=133;ExcessHet=3.9794;FS=6.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.532;SOR=0.419;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,62:133:99:1473,0,1956
chr3	58621935	rs6791782	C	T	2673.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.69;SOR=4.743;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:763,54,0
chr3	58622489	rs3816289	A	T	103.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.66;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:112,0,66
chr3	58622496	rs10707711	GT	G	672.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=4.892;VQSLOD=5.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:178,18,0
chr3	58625975	rs3749287	C	G	4023.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.19;DB;DP=87;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=-1.900e-01;SOR=0.648;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2623,260,0
chr3	58626075	rs6762192	G	T	502.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.735e+00;DB;DP=35;ExcessHet=3.0103;FS=1.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-1.210e+00;SOR=0.343;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:511,0,533
chr3	58631184	rs111621495	G	GAAATA	1048.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.642e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.58;ReadPosRankSum=0.00;SOR=0.604;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:223,15,0
chr3	58635197	rs9811989	G	A	2304.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.690e-01;DB;DP=33;ExcessHet=3.9794;FS=0.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=0.600;SOR=0.585;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1046,99,0
chr3	58641352	rs57504511	C	T	1388.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=63;ExcessHet=3.9794;FS=4.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.660;SOR=0.974;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,25:63:99:605,0,956
chr3	58641728	rs1348504	T	C	462.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=1.765;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:145,12,0
chr3	59997112	rs1130972	G	A	2829.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=138;ExcessHet=3.9794;FS=0.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.753;SOR=0.663;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,57:138:99:1294,0,1837
chr3	61734539	rs3821880	T	C	2035.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=0.088;SOR=0.972;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:904,72,0
chr3	61739259	rs72171521	GT	G	250.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=12;ExcessHet=1.5490;FS=1.763;MQ=59.59;MQRankSum=0.00;QD=13.91;ReadPosRankSum=1.89;SOR=0.306;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:12:48:48,0,161
chr3	61911417	rs35919403	T	TA	156.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.01;ReadPosRankSum=0.352;SOR=0.602;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:76:160,0,76
chr3	62063671	.	C	CA	175.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.25;ReadPosRankSum=0.00;SOR=0.793;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:26:46,0,26
chr3	62153396	rs11130878	T	C	184.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.87;SOR=3.611;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr3	62153605	rs61078615	G	GT	1267.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=87;ExcessHet=3.0103;FS=0.853;MQ=59.97;MQRankSum=-7.200e-01;QD=14.74;ReadPosRankSum=0.275;SOR=0.873;VQSLOD=0.724;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,55:87:99:1276,0,606
chr3	62189189	rs2292245	G	A	7881.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=264;ExcessHet=3.9794;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.880;SOR=0.676;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,156:264:99:4018,0,2418
chr3	62189437	rs17634074	G	C	2432.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259e+00;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=0.052;SOR=0.714;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,92:162:99:2441,0,1820
chr3	62229553	rs1352882	C	T	8008.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=0.956;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1823,189,0
chr3	62249820	.	GA	G	77.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=6;ExcessHet=3.9794;FS=4.222;MQ=59.86;MQRankSum=0.00;QD=5.17;ReadPosRankSum=-2.530e-01;SOR=1.541;VQSLOD=4.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:55:56,0,55
chr3	62256794	rs140586541	C	CA	222.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=1.65;SOR=3.258;VQSLOD=5.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,9:10:0:231,0,0
chr3	62267213	.	C	CTT,CTTT	726.51	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.43;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.60;ReadPosRankSum=1.32;SOR=0.223;VQSLOD=5.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,14:21:88:745,320,264,135,0,88
chr3	62309701	rs1881269	G	A	3111.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.963;DB;DP=52;ExcessHet=3.9794;FS=3.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=1.39;SOR=0.460;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,21:52:99:469,0,751
chr3	62355666	rs3215030	G	GT	1475.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.480e-01;DB;DP=51;ExcessHet=3.9794;FS=2.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=-2.420e-01;SOR=0.411;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,20:51:99:416,0,733
chr3	62431387	.	G	GA	684.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DP=23;ExcessHet=6.9897;FS=2.448;MQ=59.68;MQRankSum=0.00;QD=7.45;ReadPosRankSum=0.785;SOR=1.098;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,9:23:99:134,0,262
chr3	62431415	rs6791296	T	C	2821.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451e+00;DB;DP=46;ExcessHet=6.9897;FS=17.471;MQ=59.91;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=0.480;SOR=0.150;VQSLOD=-3.937e-01;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,27:46:99:637,0,506
chr3	62431478	rs147390947	G	A	944.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.281e+00;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.601;SOR=0.693;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,48:96:99:953,0,1152
chr3	62455403	rs4234671	C	T	10185.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=1.13;SOR=0.731;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4338,398,0
chr3	62459819	rs76824303	A	C	1983.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=26;ExcessHet=0.4576;FS=7.145;MQ=60.00;MQRankSum=0.00;QD=34.80;ReadPosRankSum=1.00;SOR=2.918;VQSLOD=16.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,25:26:67:812,67,0
chr3	62459828	.	AT	A	2070.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DP=33;ExcessHet=3.9794;FS=1.031;MQ=59.79;MQRankSum=0.00;QD=26.54;ReadPosRankSum=1.14;SOR=0.951;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,15:33:99:212,0,257
chr3	62477233	rs35911391	A	AACACAC	423.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.29;ReadPosRankSum=1.15;SOR=3.442;VQSLOD=3.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:52:122,0,52
chr3	62498378	rs1376917	G	A	4020.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=44;ExcessHet=3.0103;FS=0.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=0.750;SOR=0.546;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1317,130,0
chr3	62518392	rs67232838	TTG	T	499.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.37;SOR=4.294;VQSLOD=6.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
chr3	62543436	rs2600854	C	T	852.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.02;SOR=6.184;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:413,30,0
chr3	62556622	rs833663	A	G	14069.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=0.802;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4048,401,0
chr3	62556868	rs833664	C	T	2496.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.00;SOR=3.393;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:303,27,0
chr3	62612013	rs2248008	C	T	1730.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.46;SOR=6.229;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:502,42,0
chr3	62612139	rs9854038	A	T	1104.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DB;DP=75;ExcessHet=3.0103;FS=4.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.724;SOR=1.271;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,29:75:99:0|1:62612139_A_T:1113,0,2786:62612139
chr3	62612145	rs2248013	C	A	2540.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159e+00;DB;DP=81;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-5.770e-01;SOR=0.742;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,35:81:99:0|1:62612139_A_T:1212,0,2774:62612139
chr3	62612280	rs2367310	C	T	6167.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=1.790;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1995,196,0
chr3	62612294	rs2367311	T	C	5670.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=2.170;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1984,174,0
chr3	62612309	rs2367312	G	C	4709.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=2.218;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1565,147,0
chr3	62612342	rs2248023	T	C	2986.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.74;SOR=3.669;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:902,75,0
chr3	62612385	rs1349591	G	T	1435.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=29.99;SOR=5.031;VQSLOD=5.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:520,39,0
chr3	62612416	rs1349592	C	T	905.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=6.273;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:325,24,0
chr3	62631553	rs4588354	G	T	3026.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299e+00;DB;DP=45;ExcessHet=6.9897;FS=2.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.171;SOR=0.899;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,24:45:99:611,0,618
chr3	62636826	rs4688302	C	T	2375.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=2.602;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:583,45,0
chr3	62647928	rs6770658	A	G	1885.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=25;ExcessHet=3.9794;FS=3.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.866;SOR=0.282;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:926,75,0
chr3	62648267	rs112379731	C	T	818.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.925e+00;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=0.882;SOR=0.566;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:173,0,306
chr3	62739092	rs478123	A	G	3645.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.64;ReadPosRankSum=-8.040e-01;SOR=0.663;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,27:36:99:722,0,158
chr3	63083207	rs17363508	C	T	1745.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.080e-01;DB;DP=54;ExcessHet=6.9897;FS=2.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-1.330e+00;SOR=0.887;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,22:54:99:497,0,801
chr3	63264535	rs11361811	GC	G	1296.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=-2.103e+00;SOR=2.049;VQSLOD=6.22;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:278,0,278
chr3	63437858	rs6806334	T	C	5097.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.590e-01;DB;DP=78;ExcessHet=3.9794;FS=3.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=0.301;SOR=0.481;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,40:78:99:1033,0,987
chr3	63437977	rs6793874	C	G	2623.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692e+00;DB;DP=32;ExcessHet=3.0103;FS=1.538;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.16;ReadPosRankSum=-1.154e+00;SOR=1.261;VQSLOD=6.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:480,0,448
chr3	63466382	rs6772726	G	T	989.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DB;DP=14;ExcessHet=3.9794;FS=1.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.80;ReadPosRankSum=1.54;SOR=1.230;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:114,0,306
chr3	63466851	rs11349566	CA	C	373.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.77;ReadPosRankSum=0.189;SOR=2.303;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:14:105,0,14
chr3	63596277	rs6445369	A	C	2950.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DB;DP=98;ExcessHet=3.9794;FS=7.133;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-9.070e-01;SOR=0.385;VQSLOD=5.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,60:98:99:1557,0,862
chr3	63649492	rs7634688	A	G	2704.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.539;DB;DP=63;ExcessHet=1.5490;FS=1.800;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=-5.100e-01;SOR=0.488;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,24:63:99:695,0,1271
chr3	63661117	rs73113205	G	T	1210.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872e+00;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-9.990e-01;SOR=0.608;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:432,0,325
chr3	63816661	rs137940121	A	ATTGT	108.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.67;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:99:117,0,170
chr3	63817430	rs2291533	G	C	807.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.820e-01;DB;DP=88;ExcessHet=3.0103;FS=1.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=-9.720e-01;SOR=0.495;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,36:88:99:816,0,1324
chr3	63821914	rs2637982	C	G	7493.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=1.356;VQSLOD=19.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2187,218,0
chr3	63898360	rs10681703	G	GGCAGCA	713.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=15;ExcessHet=3.9794;FS=6.451;MQ=60.00;MQRankSum=0.00;QD=25.47;ReadPosRankSum=1.72;SOR=0.105;VQSLOD=4.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:15:99:404,0,317
chr3	63937992	rs12485317	C	T	715.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=72;ExcessHet=3.0103;FS=2.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=0.295;SOR=1.092;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,28:72:99:724,0,1156
chr3	63967900	rs1053338	A	G	1063.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=-1.090e-01;SOR=0.637;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,46:115:99:1072,0,1861
chr3	63968469	rs142586136	CGTT	C	150.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=1.72;SOR=0.941;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,146
chr3	63976145	rs2241821	G	A	519.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.911;SOR=0.484;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:528,0,625
chr3	63982082	rs3774729	G	A	1794.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=58;ExcessHet=3.9794;FS=5.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=1.45;SOR=0.378;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,34:58:99:931,0,586
chr3	63982293	.	TAAA	T	239.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DP=8;ExcessHet=3.9794;FS=2.269;MQ=59.94;MQRankSum=0.00;QD=17.11;ReadPosRankSum=0.036;SOR=1.421;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:94:165,0,94
chr3	63984867	rs3832255	C	CT	127.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=17;ExcessHet=3.0103;FS=2.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.49;ReadPosRankSum=-1.371e+00;SOR=1.508;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,5:17:99:136,0,398
chr3	63996262	rs1046025	C	T	375.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=-1.990e-01;SOR=2.833;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,11:13:45:384,0,45
chr3	64003983	rs831692	G	A	279.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=-2.040e-01;SOR=0.818;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,117
chr3	64004101	rs17344090	T	C	303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.667e+00;DB;DP=38;ExcessHet=3.0103;FS=1.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.98;ReadPosRankSum=-1.093e+00;SOR=1.061;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,13:38:99:312,0,748
chr3	64005226	rs2888013	A	G	469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=0.113;SOR=0.473;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:478,0,279
chr3	64008510	rs3846221	T	C	901.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=62;ExcessHet=3.0103;FS=1.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.909;SOR=0.527;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,32:62:99:910,0,754
chr3	64009432	rs3836531	AT	A	310.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930e-01;DB;DP=42;ExcessHet=3.0103;FS=2.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=1.87;SOR=0.346;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,14:42:99:319,0,746
chr3	64085744	rs11705855	G	A	610.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e-01;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-3.500e-02;SOR=0.588;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:319,0,315
chr3	64133182	rs34460293	G	A	1633.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DB;DP=125;ExcessHet=3.0103;FS=1.419;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-4.370e-01;SOR=0.859;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,63:125:99:1642,0,1637
chr3	64133350	rs27673	A	G	9397.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=1.199;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2349,234,0
chr3	64138716	rs35843	A	G	961.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.31;SOR=6.593;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:218,18,0
chr3	64142859	rs17720698	C	T	3261.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=130;ExcessHet=3.9794;FS=2.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.41;SOR=0.554;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,69:130:99:1702,0,1367
chr3	64145493	rs11720610	G	A	2308.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=62;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.99;ReadPosRankSum=-9.360e-01;SOR=0.656;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1745,184,0
chr3	64145510	rs76720468	G	A	1405.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.960e-01;DB;DP=65;ExcessHet=3.9794;FS=2.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.601;SOR=0.928;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,29:65:99:652,0,915
chr3	64145759	rs2306380	T	C	4332.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=102;ExcessHet=1.5490;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=-1.085e+00;SOR=0.600;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3045,306,0
chr3	64184676	rs695937	G	A	1814.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=52;ExcessHet=3.9794;FS=7.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=2.09;SOR=1.439;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,21:52:99:673,0,1012
chr3	64431140	rs114898153	C	A	2099.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.11;DB;DP=39;ExcessHet=1.5490;FS=2.075;MQ=60.00;MQRankSum=0.00;QD=21.65;ReadPosRankSum=1.60;SOR=1.011;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,38:39:99:1404,106,0
chr3	64518994	rs1017537	T	C	5543.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.48;SOR=1.966;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1487,132,0
chr3	64519156	rs11717554	C	T	670.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.04;ReadPosRankSum=0.00;SOR=4.407;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr3	64525171	rs11130968	G	A	4076.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.230e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.88;ReadPosRankSum=-5.630e-01;SOR=0.711;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:90:1|1:64525171_G_A:1323,90,0:64525171
chr3	64525177	rs11130969	C	T	2850.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.842e+00;DB;DP=29;ExcessHet=3.9794;FS=1.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=-5.060e-01;SOR=0.512;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:87:1|1:64525171_G_A:1285,87,0:64525171
chr3	64526610	rs11130970	G	A	1001.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.26;DB;DP=14;ExcessHet=3.9794;FS=6.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.30;ReadPosRankSum=1.33;SOR=2.501;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:507,42,0
chr3	64526651	rs3841969	CCAATGTG	C	2052.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.43;DB;DP=23;ExcessHet=3.9794;FS=5.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=0.978;SOR=1.609;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1035,69,0
chr3	64526717	rs3796384	G	C	2932.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.000e-02;DB;DP=49;ExcessHet=3.9794;FS=0.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=-3.580e-01;SOR=0.619;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1505,147,0
chr3	64526942	rs3796383	A	C	4472.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.748e+00;DB;DP=73;ExcessHet=3.9794;FS=2.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=2.15;SOR=0.671;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2116,219,0
chr3	64527321	rs1373163	T	C	5012.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.77;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=0.500;SOR=0.726;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2413,217,0
chr3	64527336	rs1036919	C	T	4303.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.46;DB;DP=60;ExcessHet=3.9794;FS=1.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=1.58;SOR=0.587;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2088,180,0
chr3	64527378	rs1036918	G	A	5077.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=40;ExcessHet=3.0103;FS=3.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=-2.038e+00;SOR=0.402;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1515,120,0
chr3	64527465	rs1036917	C	T	9573.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.044e+00;DB;DP=105;ExcessHet=3.0103;FS=5.210;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-7.130e-01;SOR=1.056;VQSLOD=6.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3448,314,0
chr3	64527835	rs11706020	G	T	494.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.510e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=1.83;SOR=1.426;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:278,24,0
chr3	64554254	rs7635677	T	C	7467.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=94;ExcessHet=3.0103;FS=3.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=0.046;SOR=0.977;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2947,282,0
chr3	64580169	rs13320542	C	T	4654.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.240e-01;DB;DP=88;ExcessHet=3.9794;FS=0.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=-2.030e-01;SOR=0.754;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2822,264,0
chr3	64582751	rs75012446	A	G	93.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-7.030e-01;SOR=0.368;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:102,0,184
chr3	64587818	rs6771712	G	A	1895.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DB;DP=205;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=2.66;SOR=0.690;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:124,81:205:99:1904,0,3208
chr3	64589851	rs9985304	A	G	2643.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.774;DB;DP=138;ExcessHet=3.9794;FS=2.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=-6.500e-02;SOR=0.882;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,54:138:99:1171,0,2309
chr3	64598760	rs4688490	A	G	169.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=-5.240e-01;SOR=1.863;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr3	64598864	rs4688491	T	C	202.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=1.10;SOR=0.818;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:211,0,283
chr3	64599279	rs6806842	T	C	1654.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=60;ExcessHet=3.9794;FS=0.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.349;SOR=0.787;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,33:60:99:882,0,654
chr3	64600829	rs56869336	C	T	266.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=-1.513e+00;SOR=1.802;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:1|0:64600822_T_C:275,0,279:64600822
chr3	64601550	rs4589926	T	C	661.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.119e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=0.937;SOR=1.893;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,12:13:4:459,0,4
chr3	64602006	rs6445415	A	G	255.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.00;SOR=1.270;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:74,0,67
chr3	64617042	rs6768487	G	C	1242.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.990e-01;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=0.660;SOR=0.572;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:752,66,0
chr3	64617070	rs6445420	C	T	2319.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.180e+00;DB;DP=29;ExcessHet=3.0103;FS=2.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=-7.450e-01;SOR=0.357;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:913,87,0
chr3	64617371	rs13079218	T	C	810.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=20;ExcessHet=3.9794;FS=10.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.228;SOR=0.086;VQSLOD=18.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:314,0,318
chr3	64617423	rs9882622	G	C	1257.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=0.427;SOR=0.637;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:441,0,741
chr3	64617690	rs35122501	A	G	792.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=20;ExcessHet=3.9794;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=0.419;SOR=0.177;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,9:20:99:0|1:64617690_A_G:312,0,382:64617690
chr3	64617699	rs7640062	A	G	1505.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=-2.030e-01;SOR=0.622;VQSLOD=7.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:64617690_A_G:686,48,0:64617690
chr3	64619048	rs11717158	C	T	1997.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.35;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=0.276;SOR=0.716;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1230,104,0
chr3	64627199	rs9831970	G	A	99.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.26;ReadPosRankSum=0.431;SOR=1.609;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:38,3,0
chr3	64627274	rs9831846	C	T	408.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.652;SOR=1.739;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:101,0,139
chr3	64627317	rs9851856	T	A	945.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=0.205;SOR=0.874;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:363,0,379
chr3	64633504	rs12715589	A	T	2850.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.94;SOR=1.754;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:745,60,0
chr3	64636543	rs35102734	CT	C	345.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=59.32;MQRankSum=0.00;QD=13.83;ReadPosRankSum=-8.910e-01;SOR=2.376;VQSLOD=4.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:8:79,0,8
chr3	64640206	rs11326156	TA	T	9370.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.48;SOR=0.765;VQSLOD=5.23;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,64:64:99:1|1:64640206_TA_T:2936,201,0:64640206
chr3	64640212	rs59517147	G	T	6295.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=21.52;SOR=0.735;VQSLOD=15.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,69:69:99:1|1:64640206_TA_T:3037,210,0:64640206
chr3	64667059	rs73124286	G	T	1493.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DB;DP=77;ExcessHet=3.9794;FS=3.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=0.301;SOR=1.025;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,38:77:99:964,0,962
chr3	65353448	rs7634490	G	A	4147.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.06;SOR=1.022;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1064,108,0
chr3	65373063	rs35217636	C	CT	289.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.11;SOR=5.136;VQSLOD=6.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
chr3	65416648	rs4688566	C	A	5571.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=3.536;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1476,117,0
chr3	65423079	rs58105006	CT	C	185.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.56;SOR=4.615;VQSLOD=4.33;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:88,12,0
chr3	65425560	rs142043619	T	TCTG	887.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DB;DP=29;ExcessHet=3.9794;FS=1.042;MQ=60.00;MQRankSum=0.00;QD=15.56;ReadPosRankSum=0.283;SOR=0.542;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,12:29:99:460,0,637
chr3	65433406	rs6768607	T	C	288.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=-9.100e-02;SOR=0.818;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr3	65456198	rs57455654	G	GA	729.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.736;DB;DP=22;ExcessHet=1.5490;FS=1.147;MQ=59.88;MQRankSum=0.00;QD=13.27;ReadPosRankSum=1.70;SOR=0.941;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,21:22:40:528,40,0
chr3	65464625	rs7636096	G	A	1746.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.30;SOR=7.614;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:558,45,0
chr3	65464651	rs12631449	A	C	362.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=0.180;SOR=1.244;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:12:308,0,12
chr3	65464712	rs73115943	C	T	114.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=2.833;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr3	65479068	rs7641222	A	C	1827.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.48;ReadPosRankSum=0.951;SOR=0.869;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:320,0,164
chr3	65583600	.	T	TG	400.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540e-01;DP=18;ExcessHet=6.9897;FS=1.103;MQ=59.91;MQRankSum=0.00;QD=6.57;ReadPosRankSum=0.638;SOR=0.960;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,4:18:49:49,0,285
chr3	65607531	rs3749454	T	C	69.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:77,0,30
chr3	65607592	rs112243102	T	TCA,TCACACACACA	743.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=2.833;VQSLOD=5.71;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,7,2:9:63:298,84,63,233,0,288
chr3	65607637	rs3749455	A	G	1487.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=2.511;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:603,57,0
chr3	66023592	rs28696109	A	G	8384.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.558e+00;DB;DP=99;ExcessHet=3.0103;FS=9.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.42;ReadPosRankSum=-1.770e+00;SOR=1.802;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1362,0,1575
chr3	66271617	rs36196715	G	C	168.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.767e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=0.706;SOR=0.293;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:177,0,399
chr3	66286831	rs188291587	G	T	121.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=27.19;SOR=2.833;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:66286831_G_T:135,9,0:66286831
chr3	66286832	rs180760147	C	G	121.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=33.73;SOR=2.833;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:66286831_G_T:135,9,0:66286831
chr3	66287056	rs146159281	G	A	3719.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.717;DB;DP=74;ExcessHet=1.5490;FS=3.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=1.12;SOR=0.621;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2289,221,0
chr3	66293766	rs66918103	T	C	1153.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=61;ExcessHet=3.0103;FS=4.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=1.01;SOR=1.495;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,39:61:99:1162,0,449
chr3	66293851	rs1678092	T	C	141.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=0.623;SOR=0.593;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:58:58,0,113
chr3	66354911	rs813636	G	C	7065.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576e+00;DB;DP=61;ExcessHet=3.0103;FS=0.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=0.361;SOR=0.834;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,31:61:99:731,0,810
chr3	66419793	rs11277069	CCAGGTGTA	C	3538.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DB;DP=60;ExcessHet=1.5490;FS=2.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.77;ReadPosRankSum=-2.148e+00;SOR=1.022;VQSLOD=6.36;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:32,28:60:99:1080,0,3072
chr3	66419942	rs1129179	A	G	3257.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=83;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.963;SOR=0.730;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,33:83:99:841,0,1228
chr3	66419956	rs13874	C	T	4405.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=84;ExcessHet=3.9794;FS=0.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=1.69;SOR=0.732;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,36:84:99:849,0,1145
chr3	66421147	rs332378	T	C	4502.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.418e+00;DB;DP=96;ExcessHet=1.5490;FS=7.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=1.46;SOR=0.305;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,49:96:99:1133,0,1374
chr3	66422157	rs7631234	A	T	338.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.063;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=1.65;SOR=0.818;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,108
chr3	66427885	rs231276	A	G	1932.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.918e+00;DB;DP=21;ExcessHet=3.9794;FS=5.018;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=1.44;SOR=0.136;VQSLOD=6.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,11:21:99:316,0,329
chr3	66428282	rs1046844	C	T	2592.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.682e+00;DB;DP=66;ExcessHet=6.9897;FS=4.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.17;SOR=0.421;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,27:66:99:767,0,1099
chr3	66430811	rs2279290	T	G	3899.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.600e-01;DB;DP=153;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=1.41;SOR=0.670;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,75:153:99:2012,0,2057
chr3	66432680	rs332371	A	G	4478.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DB;DP=78;ExcessHet=3.9794;FS=1.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-1.510e-01;SOR=0.822;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,43:78:99:1091,0,853
chr3	66433176	rs1809444	T	A	266.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.64;ReadPosRankSum=-1.036e+00;SOR=0.859;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:110,0,64
chr3	66433312	rs900172	A	G	2733.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.664e+00;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=0.769;SOR=0.867;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,24:33:99:659,0,236
chr3	66433676	rs900171	A	G	16416.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.130e-01;DB;DP=207;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=1.42;SOR=0.673;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,104:207:99:2766,0,2851
chr3	66433937	rs9872772	T	G	1002.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=6.9897;FS=2.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=0.175;SOR=1.545;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:133,0,170
chr3	66434372	rs3830215	T	TCA	1779.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.460e-01;DB;DP=34;ExcessHet=1.5490;FS=2.880;MQ=60.00;MQRankSum=0.00;QD=28.25;ReadPosRankSum=1.16;SOR=0.377;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,21:34:99:592,0,272
chr3	66436891	rs13063913	T	C	882.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291e+00;DB;DP=24;ExcessHet=6.9897;FS=3.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-6.740e-01;SOR=0.323;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:409,0,303
chr3	66444138	rs6790222	G	T	272.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=2.37;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr3	66444330	rs67550176	T	C	1014.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=1.04;SOR=0.739;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:424,0,679
chr3	66444615	rs6793110	G	A	1660.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724e+00;DB;DP=42;ExcessHet=6.9897;FS=3.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.453;SOR=0.404;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:530,0,653
chr3	66451821	rs13074230	A	C	471.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.464;SOR=0.631;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:174,0,138
chr3	66451907	rs12494912	T	C	1825.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575e+00;DB;DP=43;ExcessHet=6.9897;FS=4.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-3.660e-01;SOR=0.370;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:578,0,601
chr3	66454344	rs13093988	C	T	106.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=-9.670e-01;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	66455797	rs3796148	T	C	2630.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269e+00;DB;DP=53;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-5.530e-01;SOR=0.678;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,32:53:99:890,0,550
chr3	66455887	rs3796149	C	T	691.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e+00;DB;DP=12;ExcessHet=6.9897;FS=6.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-4.090e-01;SOR=2.833;VQSLOD=18.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:124,0,283
chr3	66458046	rs9869057	T	C	2345.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.35;SOR=6.837;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:66458046_T_C:436,33,0:66458046
chr3	66458047	rs142192811	G	GCA	605.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.88;ReadPosRankSum=0.00;SOR=1.042;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:66458046_T_C:131,0,132:66458046
chr3	66460337	rs13087232	C	A	401.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=1.38;SOR=0.283;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:48:205,0,48
chr3	66463251	rs4856924	G	A	3802.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.57;SOR=4.035;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:66463251_G_A:674,48,0:66463251
chr3	66463254	rs12493943	C	G	1571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=16;ExcessHet=6.9897;FS=4.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=0.684;SOR=1.445;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:66463251_G_A:230,0,257:66463251
chr3	66465259	rs4856928	T	C	2715.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=37;ExcessHet=3.9794;FS=3.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=0.537;SOR=0.420;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:463,0,406
chr3	66467365	rs6786813	G	A	340.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=-4.310e-01;SOR=1.609;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:27:27,0,174
chr3	66502234	rs3796150	A	G	354.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=1.01;SOR=0.551;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,142
chr3	66550756	rs1403625	G	C	18009.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.378;SOR=0.893;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,145:145:99:1|1:66550756_G_C:6499,445,0:66550756
chr3	66550762	rs1403626	G	C	17990.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=0.166;SOR=0.839;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,146:146:99:1|1:66550756_G_C:6513,445,0:66550756
chr3	67048762	rs4856833	T	C	3192.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.38;DB;DP=42;ExcessHet=3.0103;FS=3.285;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=-9.900e-02;SOR=0.687;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1457,125,0
chr3	67276059	rs9868022	G	T	1350.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=5.784;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:432,33,0
chr3	67426125	rs1065399	C	T	665.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.858e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.64;ReadPosRankSum=-1.276e+00;SOR=0.818;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:522,39,0
chr3	67426587	rs2171933	C	T	58.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.01;SOR=2.303;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr3	67426598	rs111437950	A	AC	77.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=2.303;VQSLOD=5.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	67459492	rs9824745	G	T	3536.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.200e-02;DB;DP=38;ExcessHet=3.0103;FS=2.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.23;ReadPosRankSum=-4.510e-01;SOR=0.318;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1322,114,0
chr3	67459509	rs138527816	AATGGGTTTTAGTTCTTTAC	A	2380.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030e-01;DB;DP=23;ExcessHet=3.9794;FS=1.454;MQ=60.00;MQRankSum=0.00;QD=29.04;ReadPosRankSum=-6.630e-01;SOR=0.436;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,13:23:99:517,0,380
chr3	67548645	rs200619917	C	T	213.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.510e-01;DB;DP=36;ExcessHet=3.0103;FS=1.399;MQ=60.00;MQRankSum=0.00;QD=5.92;ReadPosRankSum=0.369;SOR=0.921;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:222,0,580
chr3	67548852	rs7630024	G	A	638.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.27;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=1.42;SOR=1.931;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:429,30,0
chr3	68056209	rs35033704	A	G	387.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=1.15;SOR=2.303;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr3	68593443	.	G	C	287.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436e+00;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.26;ReadPosRankSum=1.20;SOR=0.576;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:296,0,612
chr3	68606548	rs7616164	G	T	1270.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208e+00;DB;DP=89;ExcessHet=3.0103;FS=2.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=2.13;SOR=0.837;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,49:89:99:1279,0,1100
chr3	68606690	rs9837106	T	A	685.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=70;ExcessHet=3.0103;FS=2.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=1.34;SOR=1.063;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,30:70:99:694,0,921
chr3	68782213	rs6549143	A	G	1765.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=44;ExcessHet=6.9897;FS=2.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=0.615;SOR=0.963;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,17:44:99:472,0,724
chr3	68788363	rs1504301	G	T	2380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;DB;DP=49;ExcessHet=6.9897;FS=4.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-5.500e-01;SOR=1.108;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,29:49:99:847,0,431
chr3	68801921	rs9835691	T	C	1573.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=47;ExcessHet=6.9897;FS=0.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.020e+00;SOR=0.524;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:805,0,580
chr3	68934583	rs62256110	G	T	472.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.991e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-8.500e-01;SOR=1.414;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:322,0,210
chr3	69036707	rs4855542	G	A	8295.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;DB;DP=118;ExcessHet=3.9794;FS=0.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=1.08;SOR=0.620;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3829,353,0
chr3	69037262	rs6549163	T	C	683.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.208e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.73;ReadPosRankSum=-5.240e-01;SOR=0.818;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	69037633	rs9310136	G	C	2322.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.140e-01;DB;DP=34;ExcessHet=3.9794;FS=1.412;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=-6.800e-02;SOR=0.887;VQSLOD=6.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1066,101,0
chr3	69038217	rs4855543	A	G	3633.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e-01;DB;DP=64;ExcessHet=3.9794;FS=2.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=-5.240e-01;SOR=0.527;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2004,192,0
chr3	69051080	rs9873272	A	C	512.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.03;ReadPosRankSum=-1.036e+00;SOR=1.292;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr3	69053444	rs35171227	T	C	407.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=0.621;SOR=0.518;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,16:38:99:0|1:69053444_T_C:416,0,587:69053444
chr3	69053447	rs9860095	A	T	1908.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=39;ExcessHet=1.5490;FS=1.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-1.163e+00;SOR=0.523;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:69053444_T_C:1465,117,0:69053444
chr3	69054212	rs375408376	CAA	C,CA	1363.75	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.140e-01;DB;DP=34;ExcessHet=3.0103;FS=2.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=1.02;SOR=1.658;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,10,23:34:99:774,470,494,215,0,141
chr3	69059023	rs9812253	A	C	107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.076e+00;DB;DP=16;ExcessHet=3.0103;FS=2.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.70;ReadPosRankSum=0.464;SOR=0.199;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:116,0,291
chr3	69059083	rs56954853	AC	A	123.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.96;SOR=3.258;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:69059083_AC_A:124,9,0:69059083
chr3	69059097	.	AAAAC	A	109.59	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=2.833;VQSLOD=6.57;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:69059083_AC_A:124,9,0:69059083
chr3	69073419	rs201235194	G	GT	1248.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.017;DB;DP=35;ExcessHet=3.9794;FS=0.736;MQ=60.00;MQRankSum=0.00;QD=12.01;ReadPosRankSum=0.859;SOR=0.608;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,6:35:36:36,0,528
chr3	69077197	rs9855731	A	G	890.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.514e+00;DB;DP=51;ExcessHet=3.0103;FS=4.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=-3.410e-01;SOR=1.473;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,28:51:99:899,0,695
chr3	69084434	rs2271122	T	C	875.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=0.619;SOR=4.091;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:259,18,0
chr3	69091640	rs9985501	C	T	6802.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=1.402;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1818,171,0
chr3	69093598	rs2271118	T	C	1947.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=-8.750e-01;SOR=0.569;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:694,60,0
chr3	69096614	rs2292199	G	A	8436.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.311e+00;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=-4.200e-02;SOR=0.723;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3221,318,0
chr3	69100890	rs34175383	G	A	274.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.98;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:178,15,0
chr3	69104695	rs6549179	T	A	3382.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.81;POSITIVE_TRAIN_SITE;QD=34.17;SOR=2.141;VQSLOD=5.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:764,63,0
chr3	69104752	rs6549180	C	T	1918.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=3.422;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:461,42,0
chr3	69106211	rs1866263	G	A	151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DB;DP=16;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=0.163;SOR=0.072;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:160,0,326
chr3	69111511	rs9831597	C	A	468.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.72;ReadPosRankSum=0.319;SOR=3.611;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:64:0|1:69111511_C_A:123,0,64:69111511
chr3	69111512	rs9851078	A	C	468.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.09;ReadPosRankSum=0.319;SOR=3.611;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:64:0|1:69111511_C_A:123,0,64:69111511
chr3	69137219	rs3853158	C	T	348.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=4.615;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:365,27,0
chr3	69137539	rs3853159	T	C	1282.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.270e+00;DB;DP=23;ExcessHet=1.5490;FS=4.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=-4.680e-01;SOR=0.109;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:768,69,0
chr3	69138639	.	T	C	36.25	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=18.13;SOR=0.693;VQSLOD=13.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	69138676	rs73835716	A	T	67.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=0.319;SOR=0.446;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:76,0,29
chr3	69138788	.	T	TA	376.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.474e+00;DP=13;ExcessHet=6.9897;FS=0.000;MQ=59.75;MQRankSum=0.00;QD=7.11;ReadPosRankSum=-1.102e+00;SOR=0.699;VQSLOD=5.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:85:85,0,93
chr3	69153854	rs7038	G	T	1677.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=1.225;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1694,146,0
chr3	69168747	rs115972674	A	G	1247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.336e+00;DB;DP=111;ExcessHet=3.0103;FS=8.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-1.454e+00;SOR=0.475;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,55:111:99:1256,0,1614
chr3	69220684	rs28529735	G	C	551.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=1.01;SOR=1.179;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:223,18,0
chr3	69225588	rs11128118	T	G	2259.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=31;ExcessHet=3.0103;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=0.934;SOR=1.186;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:908,93,0
chr3	69225875	rs9872199	T	A	900.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.310e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.17;ReadPosRankSum=2.10;SOR=1.609;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:410,33,0
chr3	69225911	rs9868107	A	G	794.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=4.712;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:326,24,0
chr3	69229976	rs12054011	G	C	6135.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.31;SOR=1.272;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1744,153,0
chr3	69230026	rs9818314	T	C	7999.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=1.234;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2222,201,0
chr3	69230061	rs9831516	G	A	7227.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=1.95;SOR=0.696;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2850,254,0
chr3	69230801	rs9836305	G	A	6593.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.63;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-5.820e-01;SOR=0.750;VQSLOD=6.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2900,264,0
chr3	69242770	rs11310698	CA	C	3369.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.020e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=-1.486e+00;SOR=0.760;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1185,126,0
chr3	69243923	rs9849435	G	A	383.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.35;SOR=4.804;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr3	69244162	rs9853587	G	A	8236.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.153;DB;DP=101;ExcessHet=3.0103;FS=0.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=1.75;SOR=0.652;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,100:101:99:2879,264,0
chr3	69245454	rs9310141	T	C	12511.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.33;SOR=1.031;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3677,351,0
chr3	69245623	rs73095903	A	G	283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=1.26;SOR=0.818;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:292,0,238
chr3	69245689	rs112965837	A	AAAAAC	516.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=3.611;VQSLOD=5.90;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr3	69245910	rs9823592	C	A	1228.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=6.994;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:366,30,0
chr3	69245949	rs9860235	G	C	2116.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.64;SOR=5.747;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:518,39,0
chr3	69246152	rs13059488	A	G	11330.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=0.769;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3310,318,0
chr3	69246274	rs13059687	A	G	6920.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=1.447;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2087,207,0
chr3	69246413	rs6549187	T	C	1807.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=6.091;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:437,30,0
chr3	69247668	rs4624565	C	T	832.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=6.273;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:233,18,0
chr3	69265291	rs7643175	T	C	1777.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=3.865;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:619,48,0
chr3	69265304	rs77475566	C	CA	1390.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.57;ReadPosRankSum=0.347;SOR=0.914;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:696,72,0
chr3	69265371	rs62254460	G	C	5053.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=0.267;SOR=0.735;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2020,183,0
chr3	69265580	rs71115661	CT	C	225.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=59.81;MQRankSum=0.00;QD=8.66;ReadPosRankSum=0.134;SOR=0.693;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:11:28:28,0,90
chr3	69267578	rs4855301	A	T	2397.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=-6.060e-01;SOR=0.839;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:855,84,0
chr3	69271032	rs62254461	G	A	472.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.546e+00;DB;DP=58;ExcessHet=3.0103;FS=1.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.14;ReadPosRankSum=0.316;SOR=0.864;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,21:58:99:481,0,1072
chr3	69271206	rs6549189	T	C	3270.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.68;SOR=3.912;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:835,63,0
chr3	69273656	rs9848940	G	T	6771.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=2.101;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2265,209,0
chr3	69274050	rs10574445	CAT	C	202.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=3.611;VQSLOD=5.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr3	69299233	rs4361282	C	G	1927.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=87;ExcessHet=3.9794;FS=1.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=1.70;SOR=0.565;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,35:87:99:757,0,1350
chr3	69299441	rs10526962	CGTGTGTGTGTGTGTGT	C,CGTGTGTGTGTGTGTGTGTGTGT	876.10	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=0.489;SOR=3.352;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,3:8:99:337,126,109,211,0,203
chr3	69341966	rs35818040	C	CT	141.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.44;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-7.030e-01;SOR=0.593;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:43:43,0,79
chr3	69359730	rs142506790	CACAGAGAGAGAGAG	C	643.83	PASS	AC=1;AF=0.500;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.26;SOR=1.708;VQSLOD=4.32;culprit=SOR	GT:AD:DP:GQ:PL	0/1:0,22:23:42:656,0,42
chr3	69362706	rs1483895	C	T	6105.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.02;DB;DP=106;ExcessHet=3.9794;FS=0.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=1.48;SOR=0.769;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3064,315,0
chr3	69362908	rs1483894	T	G	585.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=4.047;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	69363000	rs2314991	A	T	37.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=54.78;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.78;SOR=0.693;VQSLOD=-1.206e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	70005281	rs7623610	A	G	202.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=3.611;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	70014447	rs9863910	T	C	1693.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.873;DB;DP=47;ExcessHet=3.9794;FS=6.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=1.05;SOR=1.244;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:545,0,608
chr3	71007361	rs1053797	G	T	1343.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DB;DP=28;ExcessHet=3.9794;FS=2.207;MQ=60.00;MQRankSum=0.00;QD=19.20;ReadPosRankSum=1.51;SOR=0.440;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:82:845,82,0
chr3	71015021	rs7638391	G	T	4305.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.47;ReadPosRankSum=1.10;SOR=1.802;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1349,111,0
chr3	71019750	rs9874207	T	C	1285.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.075;DB;DP=15;ExcessHet=3.9794;FS=3.725;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=1.06;SOR=0.276;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:527,45,0
chr3	71020900	rs3755733	T	G	134.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.135;SOR=0.330;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:91:143,0,91
chr3	71162001	rs3843363	G	A	341.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.11;ReadPosRankSum=-1.150e+00;SOR=3.258;VQSLOD=18.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:116,0,31
chr3	71247257	rs939845	A	G	2244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DB;DP=193;ExcessHet=3.0103;FS=1.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.012;SOR=0.817;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,87:193:99:2253,0,2764
chr3	71247576	rs9855825	A	T	1362.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.04;SOR=0.914;VQSLOD=19.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:757,60,0
chr3	71745400	rs9876950	C	T	1817.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=0.672;SOR=0.765;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,36:60:99:972,0,631
chr3	71748643	rs1447905	T	C	1447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.770e-01;DB;DP=106;ExcessHet=3.0103;FS=2.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-1.505e+00;SOR=0.453;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,58:106:99:1456,0,1195
chr3	71748911	rs62246325	A	T	323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.397;SOR=0.850;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,11:32:99:332,0,692
chr3	71759717	rs12487242	C	G	813.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=1.10;SOR=0.416;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,10:20:99:0|1:71759717_C_G:364,0,296:71759717
chr3	71774230	rs113406997	A	G	211.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=12;ExcessHet=3.9794;FS=1.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.621;SOR=0.327;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:112,0,176
chr3	71803007	.	T	G	37.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=6;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;QD=6.22;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=19.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:46:46,0,101
chr3	72427252	rs11382371	A	AT	273.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.84;SOR=1.802;VQSLOD=3.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:79,9,0
chr3	72495593	rs11460842	T	TA	587.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DB;DP=24;ExcessHet=6.9897;FS=2.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=-3.770e-01;SOR=1.107;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,9:24:99:168,0,172
chr3	72495777	rs13066407	C	G	13725.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=1.086;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4693,449,0
chr3	72495945	rs13088771	A	G	16563.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=180;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.67;SOR=1.280;VQSLOD=3.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5769,540,0
chr3	72890278	.	T	C	709.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DP=64;ExcessHet=3.0103;FS=0.995;MQ=60.00;MQRankSum=0.00;QD=11.08;ReadPosRankSum=0.394;SOR=0.880;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,27:64:99:718,0,902
chr3	72895449	.	CT	C	159.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.00;ReadPosRankSum=-8.700e-02;SOR=0.963;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:47:47,0,100
chr3	72957734	rs11283456	C	CAGTGTTTA	2244.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.290e-01;DB;DP=61;ExcessHet=3.9794;FS=2.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.67;ReadPosRankSum=-5.180e-01;SOR=0.428;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,39:61:99:1560,0,1855
chr3	72971341	rs1502755	C	T	1690.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=68;ExcessHet=3.9794;FS=4.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.315;SOR=1.117;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,26:68:99:642,0,973
chr3	73004057	rs4455270	T	C	722.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=0.00;SOR=2.215;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,107
chr3	73004580	rs17742733	T	A	924.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.965;SOR=0.773;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:438,0,712
chr3	73016584	rs3732443	G	C	206.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.204;SOR=1.085;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:215,0,146
chr3	73016635	rs3732442	C	G	3671.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=24;ExcessHet=3.0103;FS=8.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=-6.900e-02;SOR=4.932;VQSLOD=13.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1060,72,0
chr3	73016640	rs3732441	T	C	1002.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=1.41;SOR=1.234;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:357,0,533
chr3	73016974	rs3821379	A	G	4194.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.168e+00;DB;DP=39;ExcessHet=3.0103;FS=1.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.037;SOR=0.569;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1457,117,0
chr3	73024350	rs1052278	C	A	3034.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DB;DP=76;ExcessHet=6.9897;FS=2.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.220;SOR=0.887;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,34:76:99:820,0,1020
chr3	73024520	rs5850090	G	GA	375.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.220e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=0.175;SOR=2.200;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr3	73433369	rs3205537	G	A	5566.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.806;DB;DP=143;ExcessHet=1.5490;FS=1.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=1.30;SOR=0.880;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4344,427,0
chr3	73433494	rs13091636	T	C	4672.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=106;ExcessHet=1.5490;FS=0.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=1.01;SOR=0.754;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,104:106:99:3416,269,0
chr3	73437112	rs6549532	A	G	2437.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=-1.069e+00;SOR=0.692;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1021,110,0
chr3	73437225	rs3830251	T	TA	355.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=-3.410e-01;SOR=0.693;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:336,36,0
chr3	73440108	rs35427155	G	GA	2333.11	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.654;DB;DP=46;ExcessHet=3.0103;FS=7.067;MQ=59.91;MQRankSum=0.929;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-7.770e-01;SOR=0.283;VQSLOD=0.099;culprit=FS	GT:AD:DP:GQ:PL	1/1:5,38:46:5:1023,5,0
chr3	73453201	rs2291464	C	T	2445.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.97;SOR=3.136;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1156,104,0
chr3	73453325	rs2291463	C	T	7304.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=0.4576;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=30.82;SOR=0.946;VQSLOD=4.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3488,332,0
chr3	73457041	rs754588	T	C	107.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.40;SOR=2.833;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr3	73457560	rs1488128	A	G	1254.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.370e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=0.736;SOR=2.476;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:495,36,0
chr3	73651383	rs6809923	A	T	1666.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031e+00;DB;DP=33;ExcessHet=1.5490;FS=1.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=0.633;SOR=0.412;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:405,0,546
chr3	73651469	rs6797804	C	T	4422.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.195e+00;DB;DP=71;ExcessHet=3.9794;FS=1.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=1.76;SOR=0.592;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,34:71:99:832,0,1008
chr3	73651621	rs11343439	TA	T	2357.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.044e+00;DB;DP=32;ExcessHet=3.0103;FS=2.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=0.888;SOR=0.382;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,14:32:99:331,0,309
chr3	73673578	rs6763344	G	C	6914.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.553e+00;DB;DP=80;ExcessHet=3.0103;FS=10.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=-6.020e-01;SOR=0.229;VQSLOD=17.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1125,0,1228
chr3	74315580	rs615824	C	G	6473.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.830e-01;DB;DP=81;ExcessHet=3.0103;FS=6.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=0.225;SOR=0.323;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2622,242,0
chr3	74334560	rs143021649	C	T	1249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-3.160e-01;SOR=0.666;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,46:106:99:1258,0,1534
chr3	74344134	rs1352475	A	G	408.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.394e+00;DB;DP=14;ExcessHet=3.9794;FS=2.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.452;SOR=0.223;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:119,0,288
chr3	74413676	rs6549590	T	C	5814.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DB;DP=119;ExcessHet=1.5490;FS=2.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=-2.400e-02;SOR=0.646;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,55:119:99:1292,0,1503
chr3	74473793	rs13095169	A	C	3005.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=27.82;SOR=3.482;VQSLOD=4.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1172,99,0
chr3	74474166	rs7619184	T	C	873.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.24;SOR=3.816;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr3	74570373	rs59140298	TA	T	343.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-02;DB;DP=17;ExcessHet=6.9897;FS=7.186;MQ=60.00;MQRankSum=0.00;QD=5.82;ReadPosRankSum=-3.880e-01;SOR=0.164;VQSLOD=4.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,3:17:44:44,0,240
chr3	75388161	rs6765044	T	C	4758.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DB;DP=82;ExcessHet=3.9794;FS=1.563;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=-1.160e-01;SOR=0.587;VQSLOD=6.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1011,0,1117
chr3	75388243	rs6798065	T	C	5948.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=66;ExcessHet=3.0103;FS=1.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=0.987;SOR=0.899;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,39:66:99:993,0,718
chr3	75397542	rs3891037	A	G	3142.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.356;DB;DP=32;ExcessHet=3.0103;FS=11.092;MQ=49.85;MQRankSum=-4.544e+00;NEGATIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.00;SOR=2.415;VQSLOD=-3.455e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,13:32:99:352,0,512
chr3	75397679	rs3860597	G	A	7956.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=55.97;MQRankSum=-9.530e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=0.676;SOR=0.691;VQSLOD=-1.295e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,52:101:99:1150,0,1114
chr3	75419736	rs2091866	T	G	943.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=58.72;MQRankSum=-2.000e-01;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=0.651;SOR=0.616;VQSLOD=1.28;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,22:32:99:0|1:75419736_T_G:640,0,354:75419736
chr3	75419740	rs2091865	A	C	1163.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=33;ExcessHet=3.9794;FS=0.989;MQ=59.01;MQRankSum=0.333;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.00;SOR=0.956;VQSLOD=0.597;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,10:33:99:1|0:75419736_T_G:254,0,912:75419736
chr3	75420117	rs9713678	G	A	1871.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=21;ExcessHet=3.9794;FS=1.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=2.04;SOR=1.051;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:331,0,293
chr3	75420180	rs62259093	A	G	1233.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.184;DB;DP=45;ExcessHet=3.9794;FS=2.609;MQ=59.11;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.777;SOR=0.960;VQSLOD=-1.952e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,25:45:99:652,0,460
chr3	75420606	rs12629499	C	A	788.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.757;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=51.90;MQRankSum=-6.230e-01;NEGATIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=0.816;SOR=0.914;VQSLOD=-2.651e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:184,0,196
chr3	75472209	rs11537690	C	T	853.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=59.78;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.444;SOR=0.641;VQSLOD=5.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,35:74:99:862,0,977
chr3	75472260	rs62259122	C	T	596.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.293;SOR=0.687;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:605,0,660
chr3	75475470	rs11128432	T	C	56.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=8.04;ReadPosRankSum=1.98;SOR=2.258;VQSLOD=19.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:65:65,0,136
chr3	75475588	rs9860745	C	T	271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.53;ReadPosRankSum=-4.550e-01;SOR=0.538;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:169,0,369
chr3	75475670	rs7430363	A	C	876.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=27;ExcessHet=3.9794;FS=1.164;MQ=60.00;MQRankSum=0.00;QD=19.47;ReadPosRankSum=0.258;SOR=0.906;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,20:27:99:594,0,140
chr3	75475685	rs11128433	A	G	515.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757e+00;DB;DP=25;ExcessHet=3.0103;FS=1.906;MQ=59.53;MQRankSum=-4.680e-01;QD=20.61;ReadPosRankSum=0.541;SOR=0.451;VQSLOD=-5.844e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,19:25:99:524,0,141
chr3	75475805	rs62259125	A	G	265.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=50.42;MQRankSum=-1.150e+00;NEGATIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=-1.534e+00;SOR=2.833;VQSLOD=-2.224e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:16:274,0,16
chr3	75483886	.	T	A	231.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.56;ReadPosRankSum=0.419;SOR=0.777;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:240,0,228
chr3	75648567	rs114669532	C	G	3628.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DB;DP=61;ExcessHet=1.5490;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=21.47;ReadPosRankSum=-7.590e-01;SOR=1.027;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2190,183,0
chr3	75670671	rs368711669	G	A	125.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=58.21;MQRankSum=0.792;QD=17.89;ReadPosRankSum=0.652;SOR=0.223;VQSLOD=-9.738e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:134,0,104
chr3	75670756	rs199573094	C	G	125.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DB;DP=17;ExcessHet=3.0103;FS=2.077;MQ=42.18;MQRankSum=-9.280e-01;QD=7.37;ReadPosRankSum=-2.520e-01;SOR=1.256;VQSLOD=-4.492e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:134,0,275
chr3	75679820	rs200377801	G	T	4406.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427e+00;DB;DP=48;ExcessHet=6.9897;FS=0.000;MQ=43.93;MQRankSum=-1.378e+00;QD=24.35;ReadPosRankSum=-1.465e+00;SOR=0.718;VQSLOD=-4.262e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,29:48:99:840,0,833
chr3	75679863	rs200309015	C	G	636.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.54;DB;DP=81;ExcessHet=3.0103;FS=4.871;MQ=42.80;MQRankSum=0.322;QD=7.85;ReadPosRankSum=-1.019e+00;SOR=1.773;VQSLOD=-4.258e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,20:81:99:645,0,2943
chr3	75679872	rs200814675	C	T	2990.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=98;ExcessHet=6.9897;FS=4.197;MQ=43.77;MQRankSum=-9.660e-01;QD=8.06;ReadPosRankSum=-9.660e-01;SOR=0.358;VQSLOD=-3.361e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,19:98:99:304,0,3439
chr3	75679876	rs150592543	G	A	10875.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.073e+00;DB;DP=105;ExcessHet=6.9897;FS=0.000;MQ=43.93;MQRankSum=-2.533e+00;QD=27.60;ReadPosRankSum=-5.310e-01;SOR=0.689;VQSLOD=-3.892e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,66:105:99:2361,0,1483
chr3	75679891	rs199591931	G	A	827.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212e+00;DB;DP=147;ExcessHet=3.0103;FS=4.595;MQ=43.83;MQRankSum=-2.346e+00;QD=5.63;ReadPosRankSum=0.479;SOR=1.652;VQSLOD=-3.874e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:119,28:147:99:0|1:75679891_G_A:836,0,5404:75679891
chr3	75679899	rs147499452	T	A	862.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.261e+00;DB;DP=160;ExcessHet=3.0103;FS=6.822;MQ=44.09;MQRankSum=-2.830e+00;QD=5.39;ReadPosRankSum=-6.000e-02;SOR=2.079;VQSLOD=-4.882e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:129,31:160:99:0|1:75679891_G_A:871,0,5676:75679891
chr3	75679930	rs149769501	A	C	2259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=8.96;DB;DP=273;ExcessHet=3.9794;FS=5.799;MQ=49.18;MQRankSum=-2.700e-02;QD=3.48;ReadPosRankSum=0.384;SOR=1.832;VQSLOD=-2.782e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:222,51:273:99:0|1:75679930_A_C:1489,0,9708:75679930
chr3	75679938	rs137919560	T	C	2830.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=11.39;DB;DP=325;ExcessHet=3.9794;FS=11.116;MQ=50.56;MQRankSum=-4.520e-01;NEGATIVE_TRAIN_SITE;QD=3.77;ReadPosRankSum=-2.900e-01;SOR=2.203;VQSLOD=-3.854e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:261,64:325:99:0|1:75679930_A_C:1780,0,10825:75679930
chr3	75679944	rs201399352	C	T	2934.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=358;ExcessHet=3.9794;FS=1.850;MQ=51.27;MQRankSum=0.588;NEGATIVE_TRAIN_SITE;QD=4.01;ReadPosRankSum=0.881;SOR=0.421;VQSLOD=-3.385e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:288,70:358:99:1424,0,10236
chr3	75679965	rs200738776	C	A	9878.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149e+00;DB;DP=510;ExcessHet=6.9897;FS=2.676;MQ=53.35;MQRankSum=-4.114e+00;NEGATIVE_TRAIN_SITE;QD=6.04;ReadPosRankSum=-2.822e+00;SOR=0.986;VQSLOD=-3.986e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:389,121:510:99:0|1:75679965_C_A:4006,0,16323:75679965
chr3	75679975	rs199975935	C	T	13040.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.11;DB;DP=583;ExcessHet=6.9897;FS=1.567;MQ=53.84;MQRankSum=-5.554e+00;QD=6.89;ReadPosRankSum=-2.725e+00;SOR=0.945;VQSLOD=-4.696e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:435,148:583:99:0|1:75679965_C_A:5427,0,18115:75679965
chr3	75679988	rs200933343	A	G	16846.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.65;DB;DP=700;ExcessHet=6.9897;FS=0.000;MQ=53.02;MQRankSum=-5.855e+00;QD=7.46;ReadPosRankSum=-2.424e+00;SOR=0.735;VQSLOD=-4.802e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:511,189:700:99:0|1:75679965_C_A:6595,0,21244:75679965
chr3	75679993	rs202177109	C	T	150.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=754;ExcessHet=3.0103;FS=2.094;MQ=53.19;MQRankSum=0.982;NEGATIVE_TRAIN_SITE;QD=0.20;ReadPosRankSum=-9.320e-01;SOR=0.399;VQSLOD=-3.632e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:675,79:754:99:158,0,22885
chr3	75680088	rs200387791	C	T	2884.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.958e+00;DB;DP=1026;ExcessHet=3.0103;FS=0.791;MQ=53.19;MQRankSum=1.38;NEGATIVE_TRAIN_SITE;QD=2.81;ReadPosRankSum=-7.890e-01;SOR=0.843;VQSLOD=-3.702e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:883,143:1026:99:2893,0,36172
chr3	75680122	.	C	A	6080.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.247e+00;DP=818;ExcessHet=3.9794;FS=1.342;MQ=51.64;MQRankSum=4.21;NEGATIVE_TRAIN_SITE;QD=4.35;ReadPosRankSum=4.13;SOR=0.554;VQSLOD=-4.821e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:629,189:818:99:3122,0,23186
chr3	75680133	rs200731407	G	T	15756.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646e+00;DB;DP=721;ExcessHet=6.9897;FS=1.162;MQ=51.11;MQRankSum=-1.720e+00;NEGATIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=-3.051e+00;SOR=0.810;VQSLOD=-4.070e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:354,251:721:99:9098,0,11644
chr3	75680143	rs201369225	G	T	13454.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.372e+00;DB;DP=643;ExcessHet=6.9897;FS=3.224;MQ=51.24;MQRankSum=0.987;NEGATIVE_TRAIN_SITE;QD=7.57;ReadPosRankSum=8.000e-03;SOR=0.470;VQSLOD=-2.872e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:564,79:643:99:0|1:75680143_G_T:1308,0,23908:75680143
chr3	75680159	rs200479732	A	T	11213.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=509;ExcessHet=6.9897;FS=2.393;MQ=50.24;MQRankSum=0.118;NEGATIVE_TRAIN_SITE;QD=7.83;ReadPosRankSum=1.12;SOR=0.455;VQSLOD=-3.146e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:444,65:509:99:0|1:75680143_G_T:1383,0,18962:75680143
chr3	75680231	rs142039506	AT	A	1551.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.17;DB;DP=110;ExcessHet=3.9794;FS=0.000;MQ=51.85;MQRankSum=0.149;QD=7.05;ReadPosRankSum=0.583;SOR=0.693;VQSLOD=0.516;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:84,26:110:99:0|1:75680231_AT_A:604,0,3399:75680231
chr3	75680238	.	CT	C	1522.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.534e+00;DP=111;ExcessHet=3.9794;FS=0.000;MQ=52.50;MQRankSum=-2.150e-01;QD=7.32;ReadPosRankSum=-4.200e-01;SOR=0.936;VQSLOD=0.373;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:84,27:111:99:0|1:75680231_AT_A:641,0,3318:75680231
chr3	75680253	rs148732004	C	G	6117.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.315e+00;DB;DP=97;ExcessHet=6.9897;FS=3.400;MQ=52.03;MQRankSum=-4.006e+00;NEGATIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=0.958;SOR=0.162;VQSLOD=-2.471e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1952,0,1882
chr3	75680297	.	A	T	1159.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.88;DP=112;ExcessHet=3.9794;FS=0.000;MQ=52.59;MQRankSum=-1.179e+00;NEGATIVE_TRAIN_SITE;QD=4.51;ReadPosRankSum=-8.090e-01;SOR=0.457;VQSLOD=-3.469e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,24:112:99:579,0,3238
chr3	75680302	rs200952716	A	G	903.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.657e+00;DB;DP=105;ExcessHet=6.9897;FS=0.000;MQ=53.60;MQRankSum=-1.042e+00;NEGATIVE_TRAIN_SITE;QD=2.83;ReadPosRankSum=0.324;SOR=0.249;VQSLOD=-3.321e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:94,11:105:99:0|1:75680302_A_G:151,0,4226:75680302
chr3	75680315	rs201493780	A	G	864.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=85;ExcessHet=6.9897;FS=0.000;MQ=53.79;MQRankSum=-4.160e-01;NEGATIVE_TRAIN_SITE;QD=3.25;ReadPosRankSum=0.100;SOR=0.223;VQSLOD=-3.199e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:76,9:85:99:0|1:75680302_A_G:131,0,3752:75680302
chr3	75680322	rs199957611	A	T	3577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.714e+00;DB;DP=75;ExcessHet=6.9897;FS=3.692;MQ=53.89;MQRankSum=-5.044e+00;QD=15.29;ReadPosRankSum=0.067;SOR=0.129;VQSLOD=-2.688e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,26:75:99:889,0,2319
chr3	75680325	rs182444829	A	G	3389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=70;ExcessHet=6.9897;FS=0.000;MQ=53.89;MQRankSum=2.88;NEGATIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=0.580;SOR=1.150;VQSLOD=-2.850e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,37:70:99:1405,0,1271
chr3	75680327	.	G	A	69.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.273e+00;DP=68;ExcessHet=3.0103;FS=0.000;MQ=54.38;MQRankSum=-3.421e+00;NEGATIVE_TRAIN_SITE;QD=1.02;ReadPosRankSum=0.048;SOR=0.022;VQSLOD=-3.768e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:60,8:68:78:78,0,2850
chr3	75713279	rs201674181	G	A	38.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=19.45;SOR=0.693;VQSLOD=14.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	75713299	rs188632757	C	T	68.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=58.59;QD=34.49;SOR=0.169;VQSLOD=3.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	75713327	rs149477139	C	A	152.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=53.61;MQRankSum=1.38;NEGATIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=1.38;SOR=0.307;VQSLOD=-2.912e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,71
chr3	75713381	rs150416718	C	A	398.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.680e-01;DB;DP=7;ExcessHet=6.9897;FS=7.676;MQ=51.99;MQRankSum=0.331;NEGATIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=0.366;SOR=2.457;VQSLOD=-2.793e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:63:63,0,197
chr3	75713444	rs201045273	G	A	599.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=21;ExcessHet=6.9897;FS=8.336;MQ=51.88;MQRankSum=-3.710e+00;NEGATIVE_TRAIN_SITE;QD=5.88;ReadPosRankSum=-2.025e+00;SOR=2.019;VQSLOD=-3.728e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,6:21:99:0|1:75713444_G_A:207,0,612:75713444
chr3	75713448	.	C	T	267.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DP=21;ExcessHet=3.9794;FS=7.186;MQ=52.43;MQRankSum=-3.246e+00;NEGATIVE_TRAIN_SITE;QD=3.76;ReadPosRankSum=-1.488e+00;SOR=2.410;VQSLOD=-3.777e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,6:21:99:0|1:75713444_G_A:204,0,654:75713444
chr3	75713466	rs138624694	A	G	716.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=28;ExcessHet=6.9897;FS=8.933;MQ=52.94;MQRankSum=-4.446e+00;NEGATIVE_TRAIN_SITE;QD=5.39;ReadPosRankSum=-4.370e-01;SOR=1.914;VQSLOD=-3.578e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,8:28:99:0|1:75713466_A_G:276,0,795:75713466
chr3	75713472	rs144840588	C	A	1459.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=30;ExcessHet=6.9897;FS=17.183;MQ=52.96;MQRankSum=-5.087e+00;QD=10.43;ReadPosRankSum=-8.580e-01;SOR=2.280;VQSLOD=-5.072e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,10:30:99:0|1:75713466_A_G:321,0,806:75713466
chr3	75713564	rs143803036	T	C	1449.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.083e+00;DB;DP=89;ExcessHet=3.9794;FS=21.539;MQ=50.16;MQRankSum=8.70;POSITIVE_TRAIN_SITE;QD=7.92;ReadPosRankSum=2.91;SOR=0.138;VQSLOD=-4.537e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:70,19:89:99:323,0,2674
chr3	75713618	rs150902075	A	T	1359.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=155;ExcessHet=6.9897;FS=8.404;MQ=53.67;MQRankSum=-2.154e+00;NEGATIVE_TRAIN_SITE;QD=3.05;ReadPosRankSum=-5.010e-01;SOR=1.444;VQSLOD=-2.638e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:122,33:155:99:620,0,2966
chr3	75713654	rs144674412	G	A	3622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=181;ExcessHet=6.9897;FS=3.884;MQ=55.67;MQRankSum=-1.407e+00;NEGATIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=0.140;SOR=1.002;VQSLOD=-2.383e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,45:181:99:1277,0,3401
chr3	75713669	rs142642813	G	A	3855.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.430e-01;DB;DP=182;ExcessHet=6.9897;FS=2.880;MQ=55.81;MQRankSum=-1.337e+00;NEGATIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=0.127;SOR=0.903;VQSLOD=-2.841e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:135,47:182:99:1267,0,3327
chr3	75713725	rs201670753	C	T	5788.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.126e+00;DB;DP=152;ExcessHet=6.9897;FS=2.524;MQ=57.44;MQRankSum=-2.761e+00;NEGATIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-6.490e-01;SOR=0.715;VQSLOD=-2.186e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,59:152:99:1831,0,2876
chr3	75713738	rs200032433	T	G	5281.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.283e+00;DB;DP=136;ExcessHet=6.9897;FS=2.584;MQ=57.59;MQRankSum=-2.821e+00;NEGATIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.690;SOR=0.574;VQSLOD=-2.067e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:88,48:136:99:1606,0,3004
chr3	75713748	.	G	A	747.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.680e-01;DP=136;ExcessHet=3.9794;FS=1.253;MQ=57.86;MQRankSum=-2.585e+00;NEGATIVE_TRAIN_SITE;QD=2.66;ReadPosRankSum=0.955;SOR=0.589;VQSLOD=-2.191e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:114,22:136:99:316,0,4508
chr3	75713751	rs145305355	G	A	3168.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766e+00;DB;DP=131;ExcessHet=6.9897;FS=6.840;MQ=57.61;MQRankSum=-9.560e-01;NEGATIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=1.12;SOR=0.472;VQSLOD=-1.610e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,36:131:99:862,0,3594
chr3	75713762	.	T	C	4894.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.14;DP=129;ExcessHet=6.9897;FS=4.493;MQ=57.49;MQRankSum=-3.023e+00;NEGATIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.636e+00;SOR=0.423;VQSLOD=-2.342e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:90,39:129:99:0|1:75713757_AGG_A:1379,0,3773:75713757
chr3	75713794	rs199925474	T	C	2635.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.77;DB;DP=111;ExcessHet=6.9897;FS=11.417;MQ=57.10;MQRankSum=-4.128e+00;NEGATIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=0.894;SOR=0.354;VQSLOD=-2.755e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:88,23:111:99:494,0,3044
chr3	75713811	rs148144488	G	T	1618.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.535e+00;DB;DP=115;ExcessHet=6.9897;FS=24.306;MQ=57.32;MQRankSum=-3.232e+00;NEGATIVE_TRAIN_SITE;QD=3.95;ReadPosRankSum=0.540;SOR=0.575;VQSLOD=-4.705e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:92,23:115:99:500,0,3216
chr3	75713826	rs201819656	C	T	1503.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e+00;DB;DP=123;ExcessHet=6.9897;FS=16.506;MQ=58.04;MQRankSum=-5.081e+00;QD=3.41;ReadPosRankSum=-5.760e-01;SOR=0.612;VQSLOD=-3.929e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:108,15:123:99:249,0,4527
chr3	75713858	rs114250298	A	G	8852.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=163;ExcessHet=3.9794;FS=3.341;MQ=58.84;MQRankSum=-3.285e+00;NEGATIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=0.059;SOR=0.473;VQSLOD=-1.545e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,92:163:99:2486,0,1742
chr3	75714095	rs149961519	G	A	527.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=81;ExcessHet=6.9897;FS=11.790;MQ=55.52;MQRankSum=-3.257e+00;NEGATIVE_TRAIN_SITE;QD=1.81;ReadPosRankSum=1.53;SOR=0.213;VQSLOD=-2.918e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:73,8:81:99:0|1:75714095_G_A:113,0,3153:75714095
chr3	75714102	rs199696776	C	T	577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150e-01;DB;DP=79;ExcessHet=6.9897;FS=16.324;MQ=55.34;MQRankSum=-2.899e+00;NEGATIVE_TRAIN_SITE;QD=2.09;ReadPosRankSum=1.40;SOR=0.271;VQSLOD=-3.417e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:71,8:79:99:0|1:75714095_G_A:122,0,3069:75714095
chr3	75714118	rs200804782	G	A	539.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.560e-01;DB;DP=73;ExcessHet=6.9897;FS=18.987;MQ=55.05;MQRankSum=-1.820e+00;NEGATIVE_TRAIN_SITE;QD=2.15;ReadPosRankSum=0.840;SOR=0.519;VQSLOD=-3.660e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,8:73:99:0|1:75714118_G_A:141,0,2676:75714118
chr3	75714127	rs202087783	G	C	707.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186e+00;DB;DP=59;ExcessHet=6.9897;FS=17.781;MQ=54.04;MQRankSum=-2.155e+00;NEGATIVE_TRAIN_SITE;QD=3.25;ReadPosRankSum=-1.027e+00;SOR=0.756;VQSLOD=-3.831e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,9:59:99:0|1:75714118_G_A:216,0,2395:75714118
chr3	75714157	rs374393526	T	C	427.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-01;DB;DP=65;ExcessHet=3.9794;FS=7.108;MQ=53.96;MQRankSum=-2.384e+00;NEGATIVE_TRAIN_SITE;QD=3.16;ReadPosRankSum=-4.900e-01;SOR=1.631;VQSLOD=-2.631e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,10:65:99:310,0,2015
chr3	75714345	rs202087446	G	T	5408.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930e+00;DB;DP=179;ExcessHet=6.9897;FS=0.570;MQ=57.00;MQRankSum=-7.081e+00;QD=7.20;ReadPosRankSum=-2.520e-01;SOR=0.757;VQSLOD=-4.675e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:151,28:179:99:297,0,6134
chr3	75714391	rs140933497	G	T	47.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=145;ExcessHet=3.0103;FS=2.793;MQ=59.15;MQRankSum=-2.740e+00;NEGATIVE_TRAIN_SITE;QD=0.33;ReadPosRankSum=-5.420e-01;SOR=1.291;VQSLOD=-3.296e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:134,11:145:56:0|1:75714391_G_T:56,0,5632:75714391
chr3	75714394	rs146334122	G	T	40.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.941;DB;DP=147;ExcessHet=3.0103;FS=2.788;MQ=59.17;MQRankSum=-2.767e+00;NEGATIVE_TRAIN_SITE;QD=0.27;ReadPosRankSum=-6.370e-01;SOR=1.255;VQSLOD=-3.303e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:136,11:147:49:0|1:75714391_G_T:49,0,5703:75714391
chr3	75714423	rs147590580	G	T	80.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.890e-01;DB;DP=103;ExcessHet=3.0103;FS=5.466;MQ=58.43;MQRankSum=-7.669e+00;QD=0.78;ReadPosRankSum=-2.635e+00;SOR=0.177;VQSLOD=-5.068e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:93,10:103:89:89,0,3729
chr3	75714447	rs183565652	C	T	6614.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.18;DB;DP=91;ExcessHet=6.9897;FS=4.625;MQ=57.01;MQRankSum=-6.932e+00;QD=13.78;ReadPosRankSum=-5.100e-02;SOR=0.422;VQSLOD=-3.856e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,17:91:99:0|1:75714447_C_T:473,0,3163:75714447
chr3	75714459	rs145174281	G	A	4874.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=82;ExcessHet=6.9897;FS=5.828;MQ=55.71;MQRankSum=-2.048e+00;NEGATIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-2.930e-01;SOR=0.385;VQSLOD=-1.575e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,8:82:99:342,0,3264
chr3	75714465	rs138371127	G	T	1246.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.067e+00;DB;DP=83;ExcessHet=6.9897;FS=8.870;MQ=55.33;MQRankSum=-8.212e+00;QD=2.82;ReadPosRankSum=0.308;SOR=0.444;VQSLOD=-4.720e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:71,12:83:99:0|1:75714465_G_T:275,0,3135:75714465
chr3	75714468	rs200633348	A	G	7006.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=85;ExcessHet=6.9897;FS=14.035;MQ=55.17;MQRankSum=-8.052e+00;QD=16.15;ReadPosRankSum=-2.800e-01;SOR=0.239;VQSLOD=-3.797e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,27:85:99:0|1:75714447_C_T:916,0,2418:75714447
chr3	75714486	rs201613019	A	C	1830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DB;DP=85;ExcessHet=6.9897;FS=7.177;MQ=53.78;MQRankSum=-7.362e+00;QD=4.55;ReadPosRankSum=1.97;SOR=0.850;VQSLOD=-4.509e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:72,13:85:99:0|1:75714465_G_T:289,0,2856:75714465
chr3	75714517	rs201190768	T	C	4709.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=130;ExcessHet=6.9897;FS=1.218;MQ=52.72;MQRankSum=-1.886e+00;NEGATIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-1.604e+00;SOR=0.840;VQSLOD=-3.381e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,43:130:99:1275,0,3265
chr3	75714541	rs200140354	C	T	5989.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=142;ExcessHet=6.9897;FS=0.000;MQ=52.47;MQRankSum=-2.206e+00;NEGATIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-6.150e-01;SOR=0.724;VQSLOD=-3.173e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,47:142:99:1681,0,3705
chr3	75714566	rs116393955	G	A	4153.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.020e-01;DB;DP=167;ExcessHet=6.9897;FS=12.141;MQ=54.16;MQRankSum=-8.331e+00;QD=6.73;ReadPosRankSum=-3.530e-01;SOR=1.689;VQSLOD=-5.276e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:138,29:167:99:747,0,5535
chr3	75714674	rs145654609	G	A	10285.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.876e+00;DB;DP=486;ExcessHet=6.9897;FS=2.933;MQ=57.03;MQRankSum=6.05;QD=6.19;ReadPosRankSum=0.483;SOR=0.489;VQSLOD=-3.957e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:352,134:486:99:2789,0,12261
chr3	75714807	rs199780042	G	A	25552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510e+00;DB;DP=882;ExcessHet=6.9897;FS=0.598;MQ=56.75;MQRankSum=4.90;NEGATIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=1.26;SOR=0.774;VQSLOD=-3.643e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:639,243:882:99:0|1:75714805_TG_T:8272,0,26507:75714805
chr3	75714843	rs201904817	T	A	25388.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DB;DP=949;ExcessHet=6.9897;FS=1.283;MQ=57.00;MQRankSum=3.25;NEGATIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=1.67;SOR=0.799;VQSLOD=-3.046e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:677,272:949:99:0|1:75714843_T_A:9338,0,28668:75714843
chr3	75714853	rs199889568	G	A	24770.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=983;ExcessHet=6.9897;FS=0.617;MQ=57.11;MQRankSum=2.75;NEGATIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=0.246;SOR=0.695;VQSLOD=-2.565e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:705,278:983:99:0|1:75714843_T_A:9308,0,28752:75714843
chr3	75714917	rs146351690	G	A	14958.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.308e+00;DB;DP=798;ExcessHet=3.9794;FS=0.594;MQ=57.00;MQRankSum=-2.091e+00;NEGATIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=0.472;SOR=0.602;VQSLOD=-2.202e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:564,234:798:99:7871,0,22259
chr3	75714929	rs148715408	G	A	14045.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.654e+00;DB;DP=755;ExcessHet=3.9794;FS=0.000;MQ=56.74;MQRankSum=-2.336e+00;NEGATIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=1.28;SOR=0.640;VQSLOD=-2.706e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:539,216:755:99:7481,0,21426
chr3	75714950	rs147607693	C	A	11477.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211e+00;DB;DP=648;ExcessHet=3.9794;FS=0.000;MQ=56.42;MQRankSum=-2.365e+00;NEGATIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=1.05;SOR=0.684;VQSLOD=-3.028e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:468,180:648:99:6099,0,18363
chr3	75714976	rs142843044	C	T	17664.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.117e+00;DB;DP=494;ExcessHet=6.9897;FS=3.984;MQ=56.47;MQRankSum=-7.381e+00;QD=11.98;ReadPosRankSum=-1.820e-01;SOR=0.413;VQSLOD=-4.578e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:305,189:494:99:5459,0,11460
chr3	75714980	rs201898295	C	A	7692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.95;DB;DP=469;ExcessHet=3.9794;FS=2.478;MQ=55.54;MQRankSum=-4.069e+00;NEGATIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=1.47;SOR=0.937;VQSLOD=-3.924e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:344,125:469:99:3356,0,13182
chr3	75715087	rs146985340	T	A	2927.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=92;ExcessHet=6.9897;FS=7.949;MQ=50.97;MQRankSum=-7.532e+00;QD=9.99;ReadPosRankSum=-1.416e+00;SOR=0.343;VQSLOD=-3.536e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,29:92:99:765,0,2126
chr3	75715099	rs148030993	T	A	2133.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e+00;DB;DP=73;ExcessHet=6.9897;FS=13.025;MQ=51.43;MQRankSum=-7.317e+00;QD=8.21;ReadPosRankSum=-5.570e-01;SOR=0.241;VQSLOD=-4.263e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,18:73:99:342,0,1767
chr3	75715118	rs143462620	G	A	2422.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.701e+00;DB;DP=64;ExcessHet=6.9897;FS=6.811;MQ=52.41;MQRankSum=0.930;NEGATIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-3.140e-01;SOR=1.279;VQSLOD=-1.783e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,20:64:99:0|1:75715118_G_A:701,0,1995:75715118
chr3	75715124	rs138384482	C	T	2288.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.547e+00;DB;DP=55;ExcessHet=6.9897;FS=8.495;MQ=52.57;MQRankSum=1.48;NEGATIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-1.950e-01;SOR=1.404;VQSLOD=-2.026e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,19:55:99:0|1:75715118_G_A:686,0,1720:75715118
chr3	75717964	rs116249976	A	T	141.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=3.0103;FS=3.310;MQ=59.71;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.24;SOR=2.303;VQSLOD=-1.661e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:75717964_A_T:147,0,282:75717964
chr3	75717969	rs115684736	G	C	91.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DB;DP=12;ExcessHet=3.0103;FS=2.932;MQ=59.28;MQRankSum=-2.000e+00;NEGATIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=-5.240e-01;SOR=1.828;VQSLOD=-2.087e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,3:12:99:0|1:75717969_G_C:99,0,369:75717969
chr3	75717976	rs148734908	C	T	43.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.33;MQRankSum=0.785;NEGATIVE_TRAIN_SITE;QD=3.35;ReadPosRankSum=1.98;SOR=1.022;VQSLOD=-1.467e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,2:13:51:0|1:75717976_C_T:51,0,456:75717976
chr3	75717977	rs142592001	T	G	179.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=13;ExcessHet=3.0103;FS=6.368;MQ=59.33;MQRankSum=-1.521e+00;NEGATIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=1.23;SOR=2.833;VQSLOD=-2.037e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,5:13:99:0|1:75717964_A_T:186,0,321:75717964
chr3	75717978	rs143699750	G	A	89.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.600e-02;DB;DP=13;ExcessHet=3.0103;FS=2.774;MQ=59.33;MQRankSum=-2.553e+00;NEGATIVE_TRAIN_SITE;QD=6.92;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=-2.435e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,3:13:96:0|1:75717969_G_C:96,0,411:75717969
chr3	75717996	.	C	A	42.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.42;MQRankSum=0.749;NEGATIVE_TRAIN_SITE;QD=3.01;ReadPosRankSum=1.10;SOR=0.892;VQSLOD=-1.248e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:75717976_C_T:48,0,498:75717976
chr3	75718006	rs146288550	G	A	282.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=14;ExcessHet=3.9794;FS=5.798;MQ=59.62;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=0.125;SOR=2.494;VQSLOD=-8.687e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,6:14:99:0|1:75718006_G_A:270,0,315:75718006
chr3	75718019	.	G	A	81.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DP=20;ExcessHet=3.9794;FS=2.576;MQ=59.35;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=4.07;ReadPosRankSum=0.106;SOR=1.402;VQSLOD=-2.216e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,3:20:72:0|1:75717976_C_T:72,0,747:75717976
chr3	75718025	.	C	T	60.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DP=22;ExcessHet=3.0103;FS=2.737;MQ=59.15;MQRankSum=-1.122e+00;NEGATIVE_TRAIN_SITE;QD=2.74;ReadPosRankSum=-9.600e-02;SOR=1.609;VQSLOD=-2.356e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,3:22:69:0|1:75717976_C_T:69,0,789:75717976
chr3	75718027	rs141837542	G	A	294.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=22;ExcessHet=3.9794;FS=8.220;MQ=58.71;MQRankSum=-2.012e+00;NEGATIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=0.776;SOR=2.930;VQSLOD=-2.667e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,7:22:99:0|1:75718006_G_A:249,0,600:75718006
chr3	75718028	.	C	T	61.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DP=22;ExcessHet=3.0103;FS=2.737;MQ=59.15;MQRankSum=-1.122e+00;NEGATIVE_TRAIN_SITE;QD=2.79;ReadPosRankSum=-5.740e-01;SOR=1.609;VQSLOD=-2.373e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,3:22:69:0|1:75717976_C_T:69,0,789:75717976
chr3	75718029	.	C	T	114.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DP=22;ExcessHet=3.9794;FS=2.530;MQ=58.71;MQRankSum=-1.122e+00;NEGATIVE_TRAIN_SITE;QD=3.37;ReadPosRankSum=-3.230e-01;SOR=1.678;VQSLOD=-2.244e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,3:22:69:0|1:75717976_C_T:69,0,789:75717976
chr3	75718040	rs148631006	C	T	727.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=22;ExcessHet=6.9897;FS=9.896;MQ=58.54;MQRankSum=-1.972e+00;NEGATIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=-5.180e-01;SOR=2.303;VQSLOD=-2.037e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,9:22:99:339,0,519
chr3	75718051	rs374613637	G	A	40.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=58.49;MQRankSum=-8.150e-01;NEGATIVE_TRAIN_SITE;QD=0.95;ReadPosRankSum=0.874;SOR=0.941;VQSLOD=-1.759e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,2:26:12:0|1:75717976_C_T:12,0,1002:75717976
chr3	75718054	rs146904205	G	C	708.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=26;ExcessHet=6.9897;FS=9.648;MQ=58.45;MQRankSum=-2.232e+00;NEGATIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-3.690e-01;SOR=2.262;VQSLOD=-2.176e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,10:26:99:372,0,642
chr3	75718055	.	G	C	43.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DP=26;ExcessHet=3.9794;FS=2.429;MQ=58.53;MQRankSum=-1.820e+00;NEGATIVE_TRAIN_SITE;QD=1.03;ReadPosRankSum=0.567;SOR=1.179;VQSLOD=-2.826e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,2:26:12:0|1:75717976_C_T:12,0,1002:75717976
chr3	75718064	rs199951919	C	T	139.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=26;ExcessHet=6.9897;FS=1.748;MQ=58.56;MQRankSum=0.709;NEGATIVE_TRAIN_SITE;QD=2.06;ReadPosRankSum=-8.620e-01;SOR=1.189;VQSLOD=-2.471e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,3:26:54:54,0,992
chr3	75718065	.	G	A	85.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DP=27;ExcessHet=6.9897;FS=7.381;MQ=58.38;MQRankSum=-1.866e+00;NEGATIVE_TRAIN_SITE;QD=1.23;ReadPosRankSum=0.463;SOR=2.341;VQSLOD=-2.878e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,2:27:6:0|1:75717976_C_T:6,0,1086:75717976
chr3	75718066	.	G	C	127.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DP=27;ExcessHet=6.9897;FS=1.744;MQ=58.38;MQRankSum=0.707;NEGATIVE_TRAIN_SITE;QD=1.83;ReadPosRankSum=-6.950e-01;SOR=1.129;VQSLOD=-2.444e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,3:27:51:51,0,1041
chr3	75718069	rs370009791	G	A	337.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DB;DP=29;ExcessHet=6.9897;FS=1.415;MQ=58.27;MQRankSum=0.764;NEGATIVE_TRAIN_SITE;QD=4.33;ReadPosRankSum=0.277;SOR=0.946;VQSLOD=-1.732e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,4:29:93:93,0,1019
chr3	75718071	.	G	T	120.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DP=30;ExcessHet=3.0103;FS=4.810;MQ=57.66;MQRankSum=-1.943e+00;NEGATIVE_TRAIN_SITE;QD=4.01;ReadPosRankSum=-3.900e-01;SOR=1.730;VQSLOD=-2.222e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,5:30:99:0|1:75718071_G_T:129,0,1119:75718071
chr3	75718087	rs201117282	C	T	331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=33;ExcessHet=3.9794;FS=12.678;MQ=57.45;MQRankSum=-2.311e+00;NEGATIVE_TRAIN_SITE;QD=5.02;ReadPosRankSum=1.63;SOR=3.334;VQSLOD=-4.119e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,8:33:99:261,0,1026
chr3	75718120	.	G	A	120.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.37;MQRankSum=0.680;QD=3.76;ReadPosRankSum=0.753;SOR=0.509;VQSLOD=-1.055e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,5:32:99:0|1:75718120_G_A:129,0,1487:75718120
chr3	75718125	.	C	T	508.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.700e-01;DP=34;ExcessHet=3.9794;FS=0.000;MQ=57.56;MQRankSum=-2.420e-01;NEGATIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=0.475;SOR=0.773;VQSLOD=-1.685e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,6:34:99:0|1:75718125_C_T:165,0,1752:75718125
chr3	75718129	rs149577286	A	G	1192.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=33;ExcessHet=6.9897;FS=2.479;MQ=56.95;MQRankSum=-1.471e+00;NEGATIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.285;SOR=0.970;VQSLOD=-2.640e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,10:33:99:0|1:75718129_A_G:387,0,1649:75718129
chr3	75718132	.	A	AT	114.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DP=34;ExcessHet=3.0103;FS=0.000;MQ=58.30;MQRankSum=0.913;QD=3.36;ReadPosRankSum=0.462;SOR=0.536;VQSLOD=0.337;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,5:34:99:0|1:75718120_G_A:123,0,1877:75718120
chr3	75718133	rs375793983	C	G	546.47	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=34;ExcessHet=3.9794;FS=15.845;MQ=57.13;MQRankSum=-3.450e-01;NEGATIVE_TRAIN_SITE;QD=6.58;ReadPosRankSum=0.389;SOR=2.522;VQSLOD=-3.249e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,5:34:99:0|1:75718120_G_A:123,0,1877:75718120
chr3	75718135	rs200177745	A	G	1898.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=34;ExcessHet=6.9897;FS=5.852;MQ=57.10;MQRankSum=-2.759e+00;NEGATIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-5.700e-02;SOR=1.240;VQSLOD=-1.625e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,10:34:99:0|1:75718129_A_G:348,0,1652:75718129
chr3	75718139	rs370097316	C	G	768.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=34;ExcessHet=6.9897;FS=10.615;MQ=56.97;MQRankSum=-1.849e+00;NEGATIVE_TRAIN_SITE;QD=5.96;ReadPosRankSum=0.024;SOR=1.743;VQSLOD=-2.446e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,5:34:99:120,0,1968
chr3	75718143	.	G	A	543.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DP=31;ExcessHet=3.9794;FS=0.000;MQ=57.40;MQRankSum=1.01;NEGATIVE_TRAIN_SITE;QD=6.79;ReadPosRankSum=0.733;SOR=0.591;VQSLOD=-1.774e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,7:31:99:300,0,1838
chr3	75718151	.	C	T	69.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DP=33;ExcessHet=3.0103;FS=0.000;MQ=56.65;MQRankSum=0.886;NEGATIVE_TRAIN_SITE;QD=2.10;ReadPosRankSum=1.60;SOR=0.481;VQSLOD=-3.042e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,3:33:78:0|1:75718120_G_A:78,0,2120:75718120
chr3	75718156	.	T	G	145.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089e+00;DP=33;ExcessHet=3.9794;FS=1.458;MQ=56.59;MQRankSum=1.50;NEGATIVE_TRAIN_SITE;QD=1.79;ReadPosRankSum=-5.950e-01;SOR=0.352;VQSLOD=-3.233e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,3:33:30:0|1:75718125_C_T:30,0,2225:75718125
chr3	75718173	.	G	T	158.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DP=40;ExcessHet=3.9794;FS=1.511;MQ=53.83;MQRankSum=1.52;NEGATIVE_TRAIN_SITE;QD=1.82;ReadPosRankSum=-1.285e+00;SOR=0.325;VQSLOD=-3.690e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,3:40:57:0|1:75718125_C_T:57,0,2565:75718125
chr3	75718179	rs201620404	T	C	1168.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.14;DB;DP=42;ExcessHet=6.9897;FS=16.869;MQ=51.71;MQRankSum=-2.420e-01;NEGATIVE_TRAIN_SITE;QD=7.54;ReadPosRankSum=-1.959e+00;SOR=1.996;VQSLOD=-4.805e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,7:42:99:231,0,2441
chr3	75718232	rs149701313	C	G	3011.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=115;ExcessHet=6.9897;FS=14.295;MQ=47.04;MQRankSum=0.047;QD=8.65;ReadPosRankSum=-1.331e+00;SOR=1.301;VQSLOD=-4.765e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,32:115:99:898,0,4532
chr3	75718249	rs200588432	C	T	359.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=168;ExcessHet=3.9794;FS=3.692;MQ=47.67;MQRankSum=0.905;QD=1.22;ReadPosRankSum=2.27;SOR=0.992;VQSLOD=-3.636e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:140,13:168:99:267,0,7136
chr3	75718258	rs201925389	G	A	1075.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=212;ExcessHet=6.9897;FS=5.237;MQ=47.26;MQRankSum=-3.190e+00;QD=1.80;ReadPosRankSum=-2.747e+00;SOR=1.169;VQSLOD=-3.784e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:191,21:212:33:33,0,8641
chr3	75718317	rs199979427	G	A	2074.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=334;ExcessHet=3.9794;FS=2.404;MQ=48.89;MQRankSum=-2.928e+00;QD=4.10;ReadPosRankSum=-2.890e-01;SOR=0.479;VQSLOD=-3.644e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:257,69:334:99:1987,0,12982
chr3	75718319	rs200924587	C	A	7985.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472e+00;DB;DP=334;ExcessHet=6.9897;FS=0.000;MQ=49.35;MQRankSum=0.171;QD=12.32;ReadPosRankSum=2.12;SOR=0.695;VQSLOD=-3.441e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:213,99:334:99:3418,0,10556
chr3	75718321	.	G	A	312.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464e+00;DP=330;ExcessHet=3.0103;FS=3.744;MQ=48.80;MQRankSum=-4.679e+00;QD=0.95;ReadPosRankSum=0.941;SOR=0.411;VQSLOD=-3.866e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:300,30:330:99:321,0,15866
chr3	75718329	.	G	A	986.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122e+00;DP=333;ExcessHet=3.9794;FS=0.000;MQ=50.38;MQRankSum=0.216;NEGATIVE_TRAIN_SITE;QD=1.97;ReadPosRankSum=1.17;SOR=0.583;VQSLOD=-3.729e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:284,43:333:99:918,0,14876
chr3	75718332	.	C	A	2514.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226e+00;DP=326;ExcessHet=6.9897;FS=3.500;MQ=51.24;MQRankSum=1.38;NEGATIVE_TRAIN_SITE;QD=4.02;ReadPosRankSum=1.40;SOR=0.415;VQSLOD=-2.925e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:288,34:326:99:526,0,14889
chr3	75718337	.	C	A	5450.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479e+00;DP=324;ExcessHet=6.9897;FS=0.000;MQ=51.99;MQRankSum=0.822;NEGATIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=2.03;SOR=0.688;VQSLOD=-3.334e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:261,61:324:99:1764,0,13445
chr3	75718340	rs376433595	G	A	1663.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=325;ExcessHet=3.9794;FS=0.710;MQ=52.32;MQRankSum=-2.268e+00;NEGATIVE_TRAIN_SITE;QD=3.67;ReadPosRankSum=-1.071e+00;SOR=0.772;VQSLOD=-3.784e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:266,50:325:99:1333,0,14264
chr3	75718342	.	G	A	5437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262e+00;DP=321;ExcessHet=6.9897;FS=0.000;MQ=52.60;MQRankSum=-1.180e-01;NEGATIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=2.34;SOR=0.662;VQSLOD=-3.371e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:260,61:321:99:1755,0,13347
chr3	75718344	.	G	T	3490.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.005e+00;DP=320;ExcessHet=6.9897;FS=0.000;MQ=52.78;MQRankSum=-3.000e-03;NEGATIVE_TRAIN_SITE;QD=5.87;ReadPosRankSum=0.122;SOR=0.632;VQSLOD=-3.293e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:268,52:320:99:1342,0,14243
chr3	75718346	.	C	T	1569.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DP=321;ExcessHet=3.9794;FS=3.795;MQ=52.99;MQRankSum=0.125;NEGATIVE_TRAIN_SITE;QD=3.64;ReadPosRankSum=0.433;SOR=1.091;VQSLOD=-2.518e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:258,49:321:99:1335,0,13991
chr3	75718347	rs201901848	G	A	6018.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e-01;DB;DP=323;ExcessHet=6.9897;FS=0.000;MQ=53.10;MQRankSum=-6.360e-01;NEGATIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=0.954;SOR=0.689;VQSLOD=-3.063e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:249,68:323:99:2052,0,12914
chr3	75718348	rs369928612	C	T	602.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DB;DP=325;ExcessHet=3.0103;FS=0.000;MQ=51.73;MQRankSum=0.906;NEGATIVE_TRAIN_SITE;QD=1.85;ReadPosRankSum=-1.764e+00;SOR=0.656;VQSLOD=-4.105e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:287,38:325:99:611,0,15149
chr3	75718349	.	G	A	1789.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DP=326;ExcessHet=3.9794;FS=4.916;MQ=52.83;MQRankSum=-6.220e-01;NEGATIVE_TRAIN_SITE;QD=3.99;ReadPosRankSum=0.025;SOR=1.253;VQSLOD=-2.016e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:272,54:326:99:1453,0,14945
chr3	75718353	rs145525581	T	C	6405.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-01;DB;DP=331;ExcessHet=6.9897;FS=10.362;MQ=53.71;MQRankSum=-3.272e+00;NEGATIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-1.260e-01;SOR=1.386;VQSLOD=-2.561e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:178,149:331:99:5764,0,9780
chr3	75718354	rs148838607	G	A	1851.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.770e-01;DB;DP=332;ExcessHet=3.9794;FS=3.533;MQ=53.28;MQRankSum=-2.918e+00;NEGATIVE_TRAIN_SITE;QD=3.84;ReadPosRankSum=0.525;SOR=1.037;VQSLOD=-3.089e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:266,59:332:99:1690,0,13695
chr3	75718357	.	A	G	51.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861e+00;DP=325;ExcessHet=3.0103;FS=4.177;MQ=53.05;MQRankSum=-5.505e+00;QD=0.16;ReadPosRankSum=1.62;SOR=0.516;VQSLOD=-4.502e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:302,23:325:60:60,0,16402
chr3	75718363	.	C	T	3022.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.528e+00;DP=317;ExcessHet=3.9794;FS=9.079;MQ=54.39;MQRankSum=-3.190e-01;NEGATIVE_TRAIN_SITE;QD=7.00;ReadPosRankSum=1.89;SOR=1.340;VQSLOD=-2.114e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:244,66:317:99:2206,0,12861
chr3	75718366	.	G	A	135.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.376;DP=317;ExcessHet=3.0103;FS=0.000;MQ=54.08;MQRankSum=3.10;NEGATIVE_TRAIN_SITE;QD=0.43;ReadPosRankSum=-9.360e-01;SOR=0.616;VQSLOD=-4.174e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:289,25:317:99:144,0,15703
chr3	75718368	rs373780336	G	A	1575.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DB;DP=313;ExcessHet=3.9794;FS=9.353;MQ=54.90;MQRankSum=-3.660e+00;NEGATIVE_TRAIN_SITE;QD=3.60;ReadPosRankSum=-5.700e-01;SOR=1.567;VQSLOD=-3.098e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:260,51:313:99:1356,0,14501
chr3	75718369	.	A	C	1979.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DP=311;ExcessHet=6.9897;FS=2.756;MQ=55.20;MQRankSum=0.816;NEGATIVE_TRAIN_SITE;QD=3.49;ReadPosRankSum=0.843;SOR=0.701;VQSLOD=-3.072e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:290,21:311:39:39,0,15725
chr3	75718373	.	C	T	292.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e-02;DP=309;ExcessHet=3.0103;FS=13.726;MQ=54.76;MQRankSum=-2.979e+00;NEGATIVE_TRAIN_SITE;QD=0.95;ReadPosRankSum=-7.640e-01;SOR=1.455;VQSLOD=-3.709e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:282,27:309:99:300,0,15049
chr3	75718374	rs202085915	G	A	2853.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=352;ExcessHet=3.0103;FS=0.891;MQ=55.52;MQRankSum=-1.537e+00;NEGATIVE_TRAIN_SITE;QD=8.39;ReadPosRankSum=4.66;SOR=0.763;VQSLOD=-4.868e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:250,90:352:99:2862,0,12994
chr3	75718378	.	C	T	3247.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DP=302;ExcessHet=6.9897;FS=0.000;MQ=55.64;MQRankSum=1.63;NEGATIVE_TRAIN_SITE;QD=6.40;ReadPosRankSum=-2.200e-02;SOR=0.728;VQSLOD=-3.210e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:204,62:302:99:2332,0,11220
chr3	75718381	rs200104694	C	T	3249.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=302;ExcessHet=6.9897;FS=2.100;MQ=55.77;MQRankSum=-1.680e-01;NEGATIVE_TRAIN_SITE;QD=6.32;ReadPosRankSum=-4.300e-01;SOR=0.717;VQSLOD=-3.103e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:238,45:302:99:1122,0,12520
chr3	75718382	.	G	A	985.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DP=316;ExcessHet=3.0103;FS=9.444;MQ=55.29;MQRankSum=-6.063e+00;QD=3.30;ReadPosRankSum=-2.225e+00;SOR=0.930;VQSLOD=-3.924e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:257,42:316:99:994,0,13308
chr3	75718387	.	C	T	2749.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DP=322;ExcessHet=6.9897;FS=1.301;MQ=56.04;MQRankSum=-1.560e-01;NEGATIVE_TRAIN_SITE;QD=5.29;ReadPosRankSum=-7.160e-01;SOR=0.588;VQSLOD=-3.273e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:254,38:322:99:944,0,13175
chr3	75718388	rs201273798	G	A	1393.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.980e-01;DB;DP=324;ExcessHet=3.9794;FS=1.504;MQ=56.06;MQRankSum=-9.460e-01;NEGATIVE_TRAIN_SITE;QD=3.38;ReadPosRankSum=-7.670e-01;SOR=0.896;VQSLOD=-3.410e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:262,38:324:99:855,0,13688
chr3	75718399	rs372938746	C	T	2566.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=359;ExcessHet=6.9897;FS=0.644;MQ=56.46;MQRankSum=-1.551e+00;NEGATIVE_TRAIN_SITE;QD=4.20;ReadPosRankSum=-5.220e-01;SOR=0.744;VQSLOD=-3.151e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:286,40:359:99:655,0,14056
chr3	75718400	.	G	A	1884.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.440e-01;DP=367;ExcessHet=6.9897;FS=5.325;MQ=56.41;MQRankSum=2.03;NEGATIVE_TRAIN_SITE;QD=3.00;ReadPosRankSum=0.544;SOR=1.208;VQSLOD=-1.651e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:321,44:367:99:894,0,15678
chr3	75718412	rs146934204	C	T	863.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=465;ExcessHet=6.9897;FS=1.850;MQ=56.60;MQRankSum=-1.772e+00;NEGATIVE_TRAIN_SITE;QD=1.15;ReadPosRankSum=0.315;SOR=0.947;VQSLOD=-3.514e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:402,47:465:99:586,0,18057
chr3	75718413	.	G	A	2467.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DP=474;ExcessHet=3.9794;FS=2.535;MQ=56.41;MQRankSum=1.11;NEGATIVE_TRAIN_SITE;QD=3.93;ReadPosRankSum=1.93;SOR=0.759;VQSLOD=-3.218e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:401,73:474:99:1881,0,18270
chr3	75718416	.	C	A	1122.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812e+00;DP=494;ExcessHet=3.9794;FS=5.746;MQ=56.25;MQRankSum=5.16;QD=1.71;ReadPosRankSum=1.42;SOR=0.947;VQSLOD=-2.144e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:442,52:494:99:619,0,20238
chr3	75718430	.	C	T	148.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DP=620;ExcessHet=3.0103;FS=0.979;MQ=55.70;MQRankSum=0.720;NEGATIVE_TRAIN_SITE;QD=0.24;ReadPosRankSum=-5.750e-01;SOR=0.863;VQSLOD=-3.629e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:569,51:620:99:157,0,22981
chr3	75718447	rs141907992	C	T	1004.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=636;ExcessHet=6.9897;FS=0.960;MQ=54.96;MQRankSum=-2.615e+00;NEGATIVE_TRAIN_SITE;QD=0.92;ReadPosRankSum=0.778;SOR=0.497;VQSLOD=-4.124e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:575,54:636:99:427,0,24853
chr3	75718482	rs370358827	C	T	2673.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=490;ExcessHet=3.9794;FS=4.875;MQ=54.41;MQRankSum=0.037;NEGATIVE_TRAIN_SITE;QD=3.32;ReadPosRankSum=3.25;SOR=0.401;VQSLOD=-2.536e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:387,96:490:99:2448,0,15180
chr3	75718483	.	G	A	287.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DP=484;ExcessHet=3.0103;FS=0.000;MQ=54.33;MQRankSum=2.28;NEGATIVE_TRAIN_SITE;QD=0.60;ReadPosRankSum=2.07;SOR=0.689;VQSLOD=-3.810e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:438,40:484:99:295,0,19396
chr3	75718505	.	T	C	1403.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DP=305;ExcessHet=3.0103;FS=0.867;MQ=55.32;MQRankSum=2.30;NEGATIVE_TRAIN_SITE;QD=4.60;ReadPosRankSum=2.84;SOR=0.814;VQSLOD=-3.713e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:250,55:305:99:0|1:75718505_T_C:1412,0,12615:75718505
chr3	75718521	.	C	T	3158.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.652e+00;DP=215;ExcessHet=6.9897;FS=0.807;MQ=54.24;MQRankSum=-2.834e+00;NEGATIVE_TRAIN_SITE;QD=2.57;ReadPosRankSum=2.51;SOR=0.837;VQSLOD=-4.478e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:149,66:215:99:2118,0,7577
chr3	75718525	.	G	A	5964.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.450e-01;DP=197;ExcessHet=6.9897;FS=10.086;MQ=54.17;MQRankSum=-5.338e+00;QD=5.17;ReadPosRankSum=4.32;SOR=1.476;VQSLOD=-5.177e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:177,20:197:99:353,0,9714
chr3	75718533	.	G	A	1610.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;DP=168;ExcessHet=6.9897;FS=4.268;MQ=53.92;MQRankSum=0.511;NEGATIVE_TRAIN_SITE;QD=1.65;ReadPosRankSum=1.39;SOR=1.298;VQSLOD=-2.229e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:129,39:168:99:1264,0,7751
chr3	75718539	rs202179901	G	C	20967.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=156;ExcessHet=6.9897;FS=5.447;MQ=53.48;MQRankSum=5.17;QD=24.16;ReadPosRankSum=-3.409e+00;SOR=0.398;VQSLOD=-4.171e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:76,80:156:99:3100,0,4880
chr3	75718543	rs376874855	C	G	3827.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.996e+00;DB;DP=149;ExcessHet=6.9897;FS=0.000;MQ=53.17;MQRankSum=-2.127e+00;NEGATIVE_TRAIN_SITE;QD=4.75;ReadPosRankSum=1.18;SOR=0.786;VQSLOD=-3.638e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,55:149:99:2014,0,5616
chr3	75718548	.	C	T	5997.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.09;DP=131;ExcessHet=6.9897;FS=10.272;MQ=52.47;MQRankSum=-1.910e+00;NEGATIVE_TRAIN_SITE;QD=8.87;ReadPosRankSum=2.24;SOR=1.398;VQSLOD=-2.839e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:122,9:131:89:89,0,7529
chr3	75718550	.	C	T	356.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DP=124;ExcessHet=3.9794;FS=8.022;MQ=53.02;MQRankSum=3.24;NEGATIVE_TRAIN_SITE;QD=0.97;ReadPosRankSum=-5.000e-03;SOR=1.321;VQSLOD=-2.075e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:113,11:124:99:143,0,7696
chr3	75718553	.	G	T	1681.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e-01;DP=119;ExcessHet=6.9897;FS=3.609;MQ=51.79;MQRankSum=2.09;NEGATIVE_TRAIN_SITE;QD=2.95;ReadPosRankSum=-4.350e-01;SOR=1.046;VQSLOD=-3.129e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,28:119:99:914,0,6495
chr3	75718554	.	C	T	1783.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.66;DP=118;ExcessHet=3.9794;FS=10.922;MQ=50.69;MQRankSum=2.47;NEGATIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=0.600;SOR=1.362;VQSLOD=-2.809e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,34:118:99:1208,0,6464
chr3	75718558	rs184573099	C	G	20210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=111;ExcessHet=6.9897;FS=0.000;MQ=51.35;MQRankSum=-4.609e+00;NEGATIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=-5.550e-01;SOR=0.741;VQSLOD=-3.209e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,90:111:99:3906,0,3015
chr3	75718569	.	T	C	1949.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.942e+00;DP=91;ExcessHet=6.9897;FS=3.775;MQ=51.53;MQRankSum=0.744;NEGATIVE_TRAIN_SITE;QD=4.81;ReadPosRankSum=-1.275e+00;SOR=0.420;VQSLOD=-2.886e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,20:91:99:662,0,5842
chr3	75718577	.	G	T	1965.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.530e-01;DP=76;ExcessHet=6.9897;FS=1.215;MQ=51.86;MQRankSum=-4.516e+00;NEGATIVE_TRAIN_SITE;QD=5.40;ReadPosRankSum=-1.100e-02;SOR=0.796;VQSLOD=-4.194e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,28:76:99:1148,0,4211
chr3	75718583	.	C	A	1519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.318e+00;DP=65;ExcessHet=6.9897;FS=2.487;MQ=52.21;MQRankSum=-5.572e+00;QD=4.81;ReadPosRankSum=1.32;SOR=0.477;VQSLOD=-4.703e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,22:65:99:0|1:75718583_C_A:830,0,3930:75718583
chr3	75718586	rs200204201	A	G	3722.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.595e+00;DB;DP=64;ExcessHet=6.9897;FS=4.882;MQ=52.21;MQRankSum=1.61;NEGATIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-1.551e+00;SOR=0.398;VQSLOD=-2.124e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,17:64:99:572,0,3954
chr3	75718587	.	G	T	113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DP=63;ExcessHet=3.0103;FS=2.328;MQ=52.49;MQRankSum=2.45;NEGATIVE_TRAIN_SITE;QD=1.80;ReadPosRankSum=1.29;SOR=1.505;VQSLOD=-2.791e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,7:63:99:122,0,4482
chr3	75718588	.	C	T	3229.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.89;DP=62;ExcessHet=6.9897;FS=2.172;MQ=52.27;MQRankSum=-3.631e+00;NEGATIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=0.244;SOR=0.509;VQSLOD=-3.346e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,33:62:99:1376,0,3701
chr3	75718590	.	G	T	1963.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.005e+00;DP=61;ExcessHet=6.9897;FS=0.722;MQ=52.43;MQRankSum=-4.456e+00;NEGATIVE_TRAIN_SITE;QD=7.06;ReadPosRankSum=-1.176e+00;SOR=0.558;VQSLOD=-4.102e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,20:61:99:0|1:75718583_C_A:752,0,4247:75718583
chr3	75718602	.	C	A	74.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.160e-01;DP=46;ExcessHet=3.9794;FS=2.244;MQ=50.29;MQRankSum=2.07;NEGATIVE_TRAIN_SITE;QD=0.58;ReadPosRankSum=1.43;SOR=1.037;VQSLOD=-3.831e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,5:46:81:81,0,3973
chr3	75718608	.	C	T	266.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DP=36;ExcessHet=6.9897;FS=1.428;MQ=53.08;MQRankSum=1.10;NEGATIVE_TRAIN_SITE;QD=1.45;ReadPosRankSum=-9.100e-02;SOR=0.350;VQSLOD=-3.507e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,3:36:21:21,0,3526
chr3	75718612	.	G	T	114.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DP=31;ExcessHet=3.0103;FS=2.570;MQ=54.58;MQRankSum=1.87;NEGATIVE_TRAIN_SITE;QD=3.69;ReadPosRankSum=1.61;SOR=1.609;VQSLOD=-2.168e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,5:31:99:123,0,3170
chr3	75718620	rs192981375	G	T	5049.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=29;ExcessHet=6.9897;FS=3.223;MQ=55.00;MQRankSum=-2.397e+00;NEGATIVE_TRAIN_SITE;QD=35.30;ReadPosRankSum=-2.078e+00;SOR=1.580;VQSLOD=-1.729e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,20:29:99:813,0,1731
chr3	75718622	rs371900751	G	A	244.36	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.373e+00;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=55.22;MQRankSum=-2.410e-01;NEGATIVE_TRAIN_SITE;QD=1.89;ReadPosRankSum=0.834;SOR=0.434;VQSLOD=-3.487e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,2:27:3:3,0,2946
chr3	75718630	.	C	T	977.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DP=20;ExcessHet=6.9897;FS=16.475;MQ=55.34;MQRankSum=-8.430e-01;NEGATIVE_TRAIN_SITE;QD=8.43;ReadPosRankSum=-2.246e+00;SOR=2.945;VQSLOD=-4.618e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,3:20:75:75,0,2159
chr3	75718631	rs374952966	G	A	1071.62	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.387;DB;DP=18;ExcessHet=6.9897;FS=1.086;MQ=55.33;MQRankSum=1.58;NEGATIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=0.897;SOR=0.466;VQSLOD=-3.037e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:99:120,0,2361
chr3	75718633	rs367697079	G	C	2014.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.742e+00;DB;DP=16;ExcessHet=6.9897;FS=1.193;MQ=55.32;MQRankSum=-1.389e+00;NEGATIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=-8.100e-01;SOR=0.966;VQSLOD=-2.485e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:16:99:228,0,1772
chr3	75718635	.	C	T	160.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DP=16;ExcessHet=6.9897;FS=14.911;MQ=55.59;MQRankSum=-1.596e+00;NEGATIVE_TRAIN_SITE;QD=1.94;ReadPosRankSum=0.00;SOR=0.083;VQSLOD=-2.702e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:16:90:90,0,2101
chr3	75718636	.	G	A	202.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DP=16;ExcessHet=3.9794;FS=5.044;MQ=52.95;MQRankSum=-5.510e-01;NEGATIVE_TRAIN_SITE;QD=4.70;ReadPosRankSum=-1.361e+00;SOR=1.911;VQSLOD=-2.410e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:177,0,2053
chr3	75718639	.	G	T	75.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.370e-01;DP=15;ExcessHet=3.0103;FS=0.000;MQ=57.73;MQRankSum=1.38;NEGATIVE_TRAIN_SITE;QD=5.02;ReadPosRankSum=-1.374e+00;SOR=1.270;VQSLOD=-2.461e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,3:15:84:0|1:75718639_G_T:84,0,2185:75718639
chr3	75718641	.	G	A	78.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.290e-01;DP=16;ExcessHet=3.0103;FS=2.769;MQ=57.87;MQRankSum=1.31;NEGATIVE_TRAIN_SITE;QD=4.89;ReadPosRankSum=-1.280e+00;SOR=1.609;VQSLOD=-2.077e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,3:16:87:0|1:75718639_G_T:87,0,2027:75718639
chr3	75718655	rs369616605	G	A	86.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-01;DB;DP=14;ExcessHet=3.9794;FS=3.218;MQ=56.38;MQRankSum=1.07;NEGATIVE_TRAIN_SITE;QD=2.46;ReadPosRankSum=0.840;SOR=0.120;VQSLOD=-2.510e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,2:14:79:79,0,1913
chr3	75718658	rs373193492	T	C	2619.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=57.75;MQRankSum=-5.990e-01;NEGATIVE_TRAIN_SITE;QD=32.34;ReadPosRankSum=0.358;SOR=0.791;VQSLOD=-1.331e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:401,0,1444
chr3	75718660	.	C	T	646.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.470e-01;DP=15;ExcessHet=3.9794;FS=15.378;MQ=57.69;MQRankSum=-1.400e-01;NEGATIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.289;SOR=0.049;VQSLOD=-2.069e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,3:15:90:0|1:75718616_G_A:90,0,1871:75718616
chr3	75718664	rs375085396	G	A	412.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e+00;DB;DP=16;ExcessHet=3.9794;FS=9.894;MQ=57.84;MQRankSum=-1.436e+00;NEGATIVE_TRAIN_SITE;QD=7.78;ReadPosRankSum=-3.780e-01;SOR=0.088;VQSLOD=-1.812e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,3:16:90:90,0,1871
chr3	75718672	rs369253444	C	T	451.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=22;ExcessHet=6.9897;FS=12.173;MQ=57.42;MQRankSum=-7.080e-01;NEGATIVE_TRAIN_SITE;QD=5.58;ReadPosRankSum=0.309;SOR=3.221;VQSLOD=-3.388e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,4:22:99:111,0,2030
chr3	75718685	.	C	T	340.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.980e-01;DP=20;ExcessHet=6.9897;FS=12.146;MQ=57.08;MQRankSum=-8.610e-01;NEGATIVE_TRAIN_SITE;QD=4.43;ReadPosRankSum=0.156;SOR=3.048;VQSLOD=-3.430e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,3:20:72:72,0,2011
chr3	75718693	rs199534015	G	T	488.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=21;ExcessHet=6.9897;FS=3.099;MQ=57.13;MQRankSum=-1.770e+00;NEGATIVE_TRAIN_SITE;QD=6.19;ReadPosRankSum=2.33;SOR=0.298;VQSLOD=-2.992e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,4:21:99:139,0,1907
chr3	75718696	.	G	T	196.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e+00;DP=21;ExcessHet=6.9897;FS=6.942;MQ=57.05;MQRankSum=0.776;NEGATIVE_TRAIN_SITE;QD=2.56;ReadPosRankSum=-1.550e-01;SOR=0.100;VQSLOD=-1.436e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:99:111,0,2161
chr3	75718698	.	C	A	739.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951e+00;DP=21;ExcessHet=6.9897;FS=2.718;MQ=57.05;MQRankSum=-4.180e-01;NEGATIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-6.720e-01;SOR=1.295;VQSLOD=-2.253e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:246,0,1915
chr3	75718703	rs200665140	G	C	156.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e-01;DB;DP=20;ExcessHet=3.9794;FS=6.149;MQ=56.93;MQRankSum=0.979;NEGATIVE_TRAIN_SITE;QD=3.39;ReadPosRankSum=-1.092e+00;SOR=0.154;VQSLOD=-1.542e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,3:20:74:74,0,1757
chr3	75718704	rs189230931	G	T	1991.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DB;DP=19;ExcessHet=6.9897;FS=1.827;MQ=56.91;MQRankSum=-1.004e+00;NEGATIVE_TRAIN_SITE;QD=34.93;ReadPosRankSum=1.41;SOR=1.344;VQSLOD=-2.037e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,13:19:99:534,0,1073
chr3	75718711	.	G	A	127.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DP=23;ExcessHet=3.9794;FS=7.833;MQ=55.88;MQRankSum=1.57;NEGATIVE_TRAIN_SITE;QD=2.49;ReadPosRankSum=-3.700e-02;SOR=0.089;VQSLOD=-1.395e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,3:23:66:66,0,1226
chr3	75718717	rs371163636	G	A	246.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.850e-01;DB;DP=22;ExcessHet=3.9794;FS=8.915;MQ=56.65;MQRankSum=0.733;NEGATIVE_TRAIN_SITE;QD=5.24;ReadPosRankSum=0.781;SOR=0.105;VQSLOD=-1.463e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,5:22:99:0|1:75718717_G_A:156,0,1136:75718717
chr3	75718723	.	C	T	394.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DP=22;ExcessHet=6.9897;FS=0.000;MQ=56.67;MQRankSum=-9.470e-01;NEGATIVE_TRAIN_SITE;QD=5.34;ReadPosRankSum=0.437;SOR=0.651;VQSLOD=-2.679e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,3:22:69:69,0,1184
chr3	75718724	rs199762431	G	A	261.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180e-01;DB;DP=22;ExcessHet=3.9794;FS=5.600;MQ=56.58;MQRankSum=0.733;NEGATIVE_TRAIN_SITE;QD=6.08;SOR=0.190;VQSLOD=-1.399e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,5:22:99:159,0,1094
chr3	75718730	.	G	A	604.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.650e-01;DP=31;ExcessHet=6.9897;FS=7.906;MQ=55.81;MQRankSum=0.070;NEGATIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=1.45;SOR=0.195;VQSLOD=-1.476e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:402,0,877
chr3	75718732	.	G	A	247.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.490e-01;DP=30;ExcessHet=6.9897;FS=7.023;MQ=55.59;MQRankSum=-8.700e-02;NEGATIVE_TRAIN_SITE;QD=3.22;ReadPosRankSum=1.45;SOR=0.179;VQSLOD=-1.544e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,3:30:48:48,0,1205
chr3	75718736	.	C	G	36.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;DP=30;ExcessHet=3.0103;FS=5.932;MQ=54.51;MQRankSum=-2.256e+00;NEGATIVE_TRAIN_SITE;QD=1.21;ReadPosRankSum=-1.072e+00;SOR=2.448;VQSLOD=-3.310e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,3:30:45:0|1:75718736_C_G:45,0,1247:75718736
chr3	75718739	.	C	A	42.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.159e+00;DP=28;ExcessHet=3.0103;FS=5.885;MQ=54.10;MQRankSum=-2.155e+00;NEGATIVE_TRAIN_SITE;QD=1.51;ReadPosRankSum=-1.449e+00;SOR=2.419;VQSLOD=-3.344e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,3:28:51:0|1:75718736_C_G:51,0,1163:75718736
chr3	75718753	.	G	A	139.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DP=26;ExcessHet=3.0103;FS=7.063;MQ=55.26;MQRankSum=-1.772e+00;NEGATIVE_TRAIN_SITE;QD=5.58;ReadPosRankSum=0.778;SOR=2.295;VQSLOD=-2.621e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,4:26:99:147,0,948
chr3	75779442	rs74649463	A	G	441.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.99;ReadPosRankSum=-6.740e-01;SOR=0.793;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:28:0|1:75779442_A_G:39,0,28:75779442
chr3	75779464	rs138882845	G	A	754.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=-9.670e-01;SOR=2.948;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:25:0|1:75779442_A_G:71,0,25:75779442
chr3	75779509	rs144534590	A	G	1170.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.23;ReadPosRankSum=0.718;SOR=0.327;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,8:10:99:0|1:75779509_A_G:298,0,146:75779509
chr3	75779510	rs139577718	A	G	1167.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.16;ReadPosRankSum=0.674;SOR=0.327;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:99:0|1:75779509_A_G:295,0,228:75779509
chr3	75779515	rs146519793	A	C	324.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.401e+00;DB;DP=10;ExcessHet=6.9897;FS=4.158;MQ=60.00;MQRankSum=0.00;QD=8.78;ReadPosRankSum=3.22;SOR=0.071;VQSLOD=20.58;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,0:10:9:0|1:75779515_A_C:9,0,616:75779515
chr3	75779519	rs77671262	T	G	42.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.25;ReadPosRankSum=-1.888e+00;SOR=0.061;VQSLOD=20.68;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,2:13:51:0|1:75779515_A_C:51,0,613:75779515
chr3	75779540	rs77298160	A	G	1176.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.81;ReadPosRankSum=-2.520e-01;SOR=0.484;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:1|0:75779515_A_C:354,0,377:75779515
chr3	75779552	rs144094469	A	G	2722.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.66;ReadPosRankSum=-9.670e-01;SOR=0.588;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,18:25:99:763,0,265
chr3	75779596	rs151116630	C	T	1377.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300e-02;DB;DP=63;ExcessHet=6.9897;FS=2.551;MQ=60.00;MQRankSum=0.00;QD=6.21;ReadPosRankSum=-1.662e+00;SOR=0.463;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,23:63:99:708,0,1585
chr3	75779601	rs141081469	C	T	3913.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.192e+00;DB;DP=68;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.45;ReadPosRankSum=0.704;SOR=0.662;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,21:68:99:0|1:75779601_C_T:694,0,2258:75779601
chr3	75779602	rs149829176	T	G	3910.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=69;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.16;ReadPosRankSum=0.738;SOR=0.691;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,21:69:99:0|1:75779601_C_T:691,0,2299:75779601
chr3	75779649	rs139049940	T	G	3566.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=129;ExcessHet=6.9897;FS=1.953;MQ=60.00;MQRankSum=0.00;QD=8.57;ReadPosRankSum=0.280;SOR=0.553;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,21:129:99:290,0,3709
chr3	75779680	rs202008230	A	G	4054.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.285;DB;DP=158;ExcessHet=6.9897;FS=2.952;MQ=60.00;MQRankSum=0.00;QD=8.09;ReadPosRankSum=2.09;SOR=0.954;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:99,59:158:99:0|1:75779680_A_G:2156,0,4140:75779680
chr3	75779688	rs199773894	T	G	3996.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=158;ExcessHet=6.9897;FS=2.927;MQ=60.00;MQRankSum=0.00;QD=7.84;ReadPosRankSum=1.99;SOR=0.966;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:99,59:158:99:0|1:75779680_A_G:2138,0,4183:75779680
chr3	75779709	rs147717594	C	T	12312.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=151;ExcessHet=6.9897;FS=1.852;MQ=60.00;MQRankSum=0.00;QD=24.68;ReadPosRankSum=-6.410e-01;SOR=0.590;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,107:151:99:4354,0,1431
chr3	75779719	rs199968937	T	C	3171.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=148;ExcessHet=6.9897;FS=2.136;MQ=60.00;MQRankSum=0.00;QD=6.41;ReadPosRankSum=-5.640e-01;SOR=0.923;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,57:148:99:1947,0,3632
chr3	75779724	rs201165307	T	C	13373.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.922;DB;DP=143;ExcessHet=6.9897;FS=1.169;MQ=60.00;MQRankSum=0.00;QD=26.96;ReadPosRankSum=-1.058e+00;SOR=0.665;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,105:143:99:0|1:75779724_T_C:4358,0,1431:75779724
chr3	75779727	rs187126715	A	G	13346.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=140;ExcessHet=6.9897;FS=1.828;MQ=60.00;MQRankSum=0.00;QD=27.07;ReadPosRankSum=-6.860e-01;SOR=0.718;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,101:140:99:0|1:75779724_T_C:4208,0,1476:75779724
chr3	75779742	rs141228270	G	A	6321.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.340e-01;DB;DP=131;ExcessHet=6.9897;FS=1.787;MQ=60.00;MQRankSum=0.00;QD=13.42;ReadPosRankSum=1.03;SOR=0.848;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:90,41:131:99:0|1:75779742_G_A:1461,0,3891:75779742
chr3	75779760	rs150390185	G	T	427.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716e+00;DB;DP=128;ExcessHet=3.0103;FS=0.834;MQ=60.00;MQRankSum=0.00;QD=3.34;ReadPosRankSum=-9.760e-01;SOR=0.557;VQSLOD=20.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:101,27:128:99:436,0,3982
chr3	75779762	rs144623265	G	T	6772.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.821e+00;DB;DP=122;ExcessHet=6.9897;FS=1.145;MQ=60.00;MQRankSum=0.00;QD=15.79;ReadPosRankSum=1.17;SOR=0.793;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:84,38:122:99:0|1:75779742_G_A:1387,0,3693:75779742
chr3	75779769	rs144291921	C	G	10338.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=114;ExcessHet=6.9897;FS=3.523;MQ=60.00;MQRankSum=0.00;QD=25.22;ReadPosRankSum=0.359;SOR=0.963;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,80:114:99:3246,0,1186
chr3	75779777	rs147133731	TA	T	8271.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=96;ExcessHet=6.9897;FS=5.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=0.552;SOR=1.010;VQSLOD=6.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:34,62:96:99:2620,0,1274
chr3	75779788	rs141311667	G	C	311.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=91;ExcessHet=3.0103;FS=1.138;MQ=60.00;MQRankSum=0.00;QD=3.42;ReadPosRankSum=1.32;SOR=0.870;VQSLOD=20.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:75,16:91:99:320,0,2896
chr3	75779857	rs138115158	C	A	3826.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.601e+00;DB;DP=44;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.05;ReadPosRankSum=0.155;SOR=0.608;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,31:44:99:1158,0,307
chr3	75779860	rs377262838	G	A	239.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.45;DB;DP=45;ExcessHet=3.9794;FS=4.457;MQ=60.00;MQRankSum=0.00;QD=2.21;ReadPosRankSum=1.19;SOR=1.875;VQSLOD=19.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,6:45:99:113,0,1482
chr3	75779884	rs138094223	A	T	3150.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=35;ExcessHet=6.9897;FS=2.339;MQ=60.00;MQRankSum=0.00;QD=28.13;ReadPosRankSum=0.392;SOR=1.863;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,28:35:99:0|1:75779884_A_T:1155,0,200:75779884
chr3	75779885	rs143565977	T	C	3150.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.00;DB;DP=35;ExcessHet=6.9897;FS=2.331;MQ=60.00;MQRankSum=0.00;QD=28.39;ReadPosRankSum=0.480;SOR=1.841;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,28:35:99:0|1:75779884_A_T:1155,0,200:75779884
chr3	75779886	rs147168427	A	C	2816.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.90;DB;DP=34;ExcessHet=6.9897;FS=2.603;MQ=60.00;MQRankSum=0.00;QD=27.09;ReadPosRankSum=-1.590e-01;SOR=1.656;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,25:34:99:0|1:75779886_A_C:985,0,335:75779886
chr3	75779901	rs151297821	C	G	2317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.194e+00;DB;DP=20;ExcessHet=6.9897;FS=5.798;MQ=60.00;MQRankSum=0.00;QD=30.50;ReadPosRankSum=0.315;SOR=3.511;VQSLOD=14.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,18:20:99:0|1:75779884_A_T:786,0,111:75779884
chr3	75779909	rs199760223	G	A	2023.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-02;DB;DP=19;ExcessHet=6.9897;FS=2.784;MQ=60.00;MQRankSum=0.00;QD=28.51;ReadPosRankSum=0.333;SOR=1.785;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,14:19:99:0|1:75779886_A_C:573,0,168:75779886
chr3	75779910	.	A	T	69.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.65;ReadPosRankSum=1.46;SOR=0.015;VQSLOD=20.97;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,3:19:78:0|1:75779910_A_T:78,0,663:75779910
chr3	75779918	rs200328207	A	G	1911.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=16;ExcessHet=6.9897;FS=3.382;MQ=60.00;MQRankSum=0.00;QD=31.34;ReadPosRankSum=1.53;SOR=2.187;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,14:16:39:0|1:75779884_A_T:624,0,39:75779884
chr3	75779930	rs144941952	A	T	662.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.75;ReadPosRankSum=0.558;SOR=0.416;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:13:93:93,0,307
chr3	75779931	rs148030519	C	T	87.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.71;ReadPosRankSum=0.593;SOR=0.124;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:96:96,0,411
chr3	75779960	rs147340294	A	C	485.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.15;ReadPosRankSum=-2.380e-01;SOR=0.534;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:142,0,296
chr3	75780950	rs142421357	A	G	161.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.76;ReadPosRankSum=1.04;SOR=0.892;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:110,0,106
chr3	75780972	rs143112214	A	G	153.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.54;ReadPosRankSum=1.80;SOR=0.616;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:104,0,191
chr3	75780991	rs80125621	A	G	490.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=13;ExcessHet=3.9794;FS=3.174;MQ=60.00;MQRankSum=0.00;QD=21.32;ReadPosRankSum=-2.040e-01;SOR=0.091;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:264,0,176
chr3	75781031	rs140443306	G	A	1128.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.872e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.54;ReadPosRankSum=0.207;SOR=0.900;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:316,0,170
chr3	75781049	rs139323150	G	T	151.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.45;ReadPosRankSum=1.73;SOR=0.285;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:160,0,385
chr3	75781073	rs145426707	C	T	722.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543e+00;DB;DP=20;ExcessHet=6.9897;FS=5.574;MQ=60.00;MQRankSum=0.00;QD=8.51;ReadPosRankSum=-1.368e+00;SOR=0.244;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:243,0,385
chr3	75781222	rs142624918	C	T	2912.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.310e-01;DB;DP=64;ExcessHet=6.9897;FS=4.608;MQ=60.00;MQRankSum=0.00;QD=13.18;ReadPosRankSum=-1.090e+00;SOR=0.951;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,21:64:99:531,0,1126
chr3	75781243	rs150979925	T	C	1109.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=62;ExcessHet=6.9897;FS=1.326;MQ=60.00;MQRankSum=0.00;QD=4.85;ReadPosRankSum=0.768;SOR=0.855;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,7:62:99:125,0,2310
chr3	75781257	rs150224351	T	G	3035.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=61;ExcessHet=6.9897;FS=1.677;MQ=60.00;MQRankSum=0.00;QD=13.43;ReadPosRankSum=1.29;SOR=0.842;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,17:61:99:659,0,1406
chr3	75781263	rs202238451	T	C	4723.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=63;ExcessHet=6.9897;FS=1.685;MQ=60.00;MQRankSum=0.00;QD=21.00;ReadPosRankSum=1.73;SOR=0.820;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:1061,0,1379
chr3	75781272	rs138244060	C	A	1969.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.752e+00;DB;DP=61;ExcessHet=6.9897;FS=1.880;MQ=60.00;MQRankSum=0.00;QD=9.16;ReadPosRankSum=2.68;SOR=0.551;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,18:61:99:555,0,1670
chr3	75781318	rs140240604	A	C	3632.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=57;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.30;ReadPosRankSum=-6.620e-01;SOR=0.694;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,40:57:99:1125,0,380
chr3	75781334	rs139777941	G	A	1568.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371e+00;DB;DP=44;ExcessHet=6.9897;FS=3.405;MQ=60.00;MQRankSum=0.00;QD=10.67;ReadPosRankSum=0.549;SOR=0.427;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:494,0,854
chr3	75781338	rs150289122	A	G	3538.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.620e-01;DB;DP=43;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.46;ReadPosRankSum=-1.300e-02;SOR=0.638;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,30:43:99:1149,0,359
chr3	75781367	.	C	T	45.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.89;ReadPosRankSum=-1.354e+00;SOR=0.307;VQSLOD=20.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,3:24:54:54,0,765
chr3	75781372	rs149425899	C	T	1454.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.957e+00;DB;DP=20;ExcessHet=6.9897;FS=10.534;MQ=60.00;MQRankSum=0.00;QD=22.38;ReadPosRankSum=0.052;SOR=0.054;VQSLOD=16.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:458,0,203
chr3	75781386	rs144799747	C	T	1146.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614e+00;DB;DP=16;ExcessHet=6.9897;FS=2.667;MQ=60.00;MQRankSum=0.00;QD=24.40;ReadPosRankSum=1.40;SOR=0.199;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:420,0,132
chr3	75781404	rs140497979	G	T	443.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.336e+00;DB;DP=11;ExcessHet=4.7712;FS=3.332;MQ=60.00;MQRankSum=0.00;QD=15.84;ReadPosRankSum=1.44;SOR=0.153;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:218,0,185
chr3	75781416	rs138895455	A	G	377.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.9794;FS=3.222;MQ=60.00;MQRankSum=0.00;QD=17.97;ReadPosRankSum=1.38;SOR=0.160;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:27:207,0,27
chr3	75781418	rs201912757	T	A	660.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.940;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.47;ReadPosRankSum=0.613;SOR=0.836;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	75781419	rs141674262	C	A	197.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.16;ReadPosRankSum=2.27;SOR=0.569;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,1:6:27:0|1:75781419_C_A:27,0,207:75781419
chr3	75781421	rs142918327	C	G	197.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.16;ReadPosRankSum=2.27;SOR=0.569;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,1:6:27:0|1:75781419_C_A:27,0,207:75781419
chr3	75781459	rs151233767	T	C	149.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.87;SOR=1.609;VQSLOD=18.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr3	75785808	rs62250103	T	C	597.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.12;ReadPosRankSum=0.816;SOR=0.752;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,7:12:99:0|1:75785808_T_C:258,0,164:75785808
chr3	75785813	rs79473156	G	A	123.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.990e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.13;ReadPosRankSum=1.50;SOR=0.086;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,3:14:85:0|1:75785808_T_C:85,0,593:75785808
chr3	75785851	rs149073123	C	T	394.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.827e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.74;ReadPosRankSum=-7.070e-01;SOR=0.434;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:185,0,279
chr3	75785852	rs143549720	A	G	790.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=12;ExcessHet=6.9897;FS=3.736;MQ=60.00;MQRankSum=0.00;QD=15.21;ReadPosRankSum=-5.470e-01;SOR=0.119;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:189,0,248
chr3	75785878	rs144298117	C	G	1059.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.53;DB;DP=23;ExcessHet=6.9897;FS=1.959;MQ=60.00;MQRankSum=0.00;QD=15.14;ReadPosRankSum=-1.230e-01;SOR=1.167;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:287,0,464
chr3	75785895	rs146396455	G	C	817.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380e-01;DB;DP=22;ExcessHet=6.9897;FS=1.834;MQ=60.00;MQRankSum=0.00;QD=12.03;ReadPosRankSum=-6.490e-01;SOR=1.244;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:294,0,460
chr3	75785917	rs141958574	A	T	1006.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e+00;DB;DP=37;ExcessHet=6.9897;FS=7.651;MQ=60.00;MQRankSum=0.00;QD=9.97;ReadPosRankSum=-3.290e-01;SOR=1.742;VQSLOD=18.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,14:37:99:0|1:75785917_A_T:540,0,905:75785917
chr3	75785918	rs150658686	G	A	1036.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497e+00;DB;DP=37;ExcessHet=6.9897;FS=7.607;MQ=60.00;MQRankSum=0.00;QD=10.17;ReadPosRankSum=-4.070e-01;SOR=1.713;VQSLOD=18.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,14:37:99:0|1:75785917_A_T:540,0,905:75785917
chr3	75785936	rs9881328	C	T	1407.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DB;DP=53;ExcessHet=6.9897;FS=8.508;MQ=60.00;MQRankSum=0.00;QD=10.20;ReadPosRankSum=-3.210e-01;SOR=1.509;VQSLOD=18.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:833,0,847
chr3	75785942	rs149793384	G	A	240.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=58;ExcessHet=6.9897;FS=2.512;MQ=60.00;MQRankSum=0.00;QD=1.64;ReadPosRankSum=-1.503e+00;SOR=1.037;VQSLOD=20.25;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:53,5:58:47:0|1:75785942_G_A:47,0,2192:75785942
chr3	75785959	rs147467265	G	T	412.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-01;DB;DP=63;ExcessHet=6.9897;FS=8.843;MQ=59.91;MQRankSum=0.00;QD=2.33;ReadPosRankSum=-7.310e-01;SOR=1.816;VQSLOD=1.10;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:56,7:63:99:0|1:75785942_G_A:109,0,2378:75785942
chr3	75785996	rs147646558	G	A	5875.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e+00;DB;DP=86;ExcessHet=6.9897;FS=18.329;MQ=59.94;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=-5.400e-02;SOR=1.508;VQSLOD=-2.041e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1766,0,1459
chr3	75785999	rs201598653	A	G	3550.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=87;ExcessHet=6.9897;FS=8.244;MQ=59.94;MQRankSum=0.00;QD=12.91;ReadPosRankSum=-4.600e-02;SOR=1.144;VQSLOD=4.30;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,35:87:99:0|1:75785999_A_G:1419,0,2069:75785999
chr3	75786007	rs199857928	C	T	3661.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DB;DP=90;ExcessHet=6.9897;FS=8.960;MQ=60.00;MQRankSum=0.00;QD=12.67;ReadPosRankSum=0.151;SOR=1.158;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,39:90:99:0|1:75785999_A_G:1507,0,2147:75785999
chr3	75786008	rs201202549	A	G	3664.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=92;ExcessHet=6.9897;FS=8.966;MQ=60.00;MQRankSum=0.00;QD=12.59;ReadPosRankSum=0.083;SOR=1.165;VQSLOD=18.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,40:92:99:0|1:75785999_A_G:1510,0,2105:75785999
chr3	75786019	rs142183924	G	C	2035.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.170e-01;DB;DP=88;ExcessHet=6.9897;FS=12.231;MQ=60.00;MQRankSum=0.00;QD=6.97;ReadPosRankSum=-4.370e-01;SOR=1.410;VQSLOD=14.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:75,13:88:99:0|1:75786019_G_C:311,0,3236:75786019
chr3	75786035	rs149076283	G	GA	1544.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=99;ExcessHet=6.9897;FS=8.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.54;ReadPosRankSum=0.464;SOR=1.160;VQSLOD=4.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:73,26:99:99:540,0,2720
chr3	75786036	rs202029173	A	G	434.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=102;ExcessHet=3.0103;FS=1.467;MQ=60.00;MQRankSum=0.00;QD=4.26;ReadPosRankSum=-3.630e-01;SOR=0.538;VQSLOD=20.86;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:85,17:102:99:0|1:75786019_G_C:443,0,3687:75786019
chr3	75786042	rs140243156	G	A	5448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396e+00;DB;DP=114;ExcessHet=6.9897;FS=23.097;MQ=60.00;MQRankSum=0.00;QD=16.87;ReadPosRankSum=-2.540e-01;SOR=1.512;VQSLOD=9.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,74:114:99:2698,0,1360
chr3	75786059	rs145338111	C	T	11444.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.370e-01;DB;DP=130;ExcessHet=6.9897;FS=6.823;MQ=60.00;MQRankSum=0.00;QD=27.38;ReadPosRankSum=-1.094e+00;SOR=1.189;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,89:130:99:3686,0,1417
chr3	75786060	rs137915102	A	G	4189.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=130;ExcessHet=6.9897;FS=5.914;MQ=60.00;MQRankSum=0.00;QD=9.91;ReadPosRankSum=-1.129e+00;SOR=1.119;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,36:130:99:977,0,4064
chr3	75786071	rs200303868	C	A	6499.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719e+00;DB;DP=145;ExcessHet=6.9897;FS=1.206;MQ=60.00;MQRankSum=0.00;QD=13.63;ReadPosRankSum=-1.600e-01;SOR=0.830;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:89,56:145:99:0|1:75786071_C_A:2159,0,3605:75786071
chr3	75786079	rs202061186	C	T	6373.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=153;ExcessHet=6.9897;FS=1.204;MQ=59.97;MQRankSum=0.00;QD=12.33;ReadPosRankSum=0.312;SOR=0.813;VQSLOD=4.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:100,53:153:99:0|1:75786071_C_A:1919,0,3918:75786071
chr3	75786080	rs144586950	G	A,T	15580.31	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.33;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.25;ReadPosRankSum=0.758;SOR=0.668;VQSLOD=6.95;culprit=MQ	GT:AD:DP:GQ:PL	1/2:19,107,24:150:99:4438,134,380,3728,0,4228
chr3	75786163	rs149637099	C	T	4662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-01;DB;DP=181;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.76;ReadPosRankSum=-6.270e-01;SOR=0.675;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:158,23:181:99:136,0,5271
chr3	75786211	rs147483742	A	G	6570.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=201;ExcessHet=6.9897;FS=1.146;MQ=60.00;MQRankSum=0.00;QD=9.15;ReadPosRankSum=1.39;SOR=0.791;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,71:201:99:2184,0,5524
chr3	75786225	rs145360192	G	A	7006.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-01;DB;DP=188;ExcessHet=6.9897;FS=1.878;MQ=60.00;MQRankSum=0.00;QD=10.32;ReadPosRankSum=-1.820e-01;SOR=0.841;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,78:188:99:2561,0,4076
chr3	75786230	rs149559986	C	T	2395.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.130e-01;DB;DP=181;ExcessHet=6.9897;FS=2.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.61;ReadPosRankSum=0.264;SOR=0.595;VQSLOD=22.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:164,17:181:49:49,0,6650
chr3	75786243	rs139633377	C	T	8754.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716e+00;DB;DP=177;ExcessHet=6.9897;FS=4.237;MQ=60.00;MQRankSum=0.00;QD=13.87;ReadPosRankSum=0.417;SOR=0.993;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:110,67:177:99:0|1:75786243_C_T:2554,0,5036:75786243
chr3	75786244	rs201924124	A	T	1290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=165;ExcessHet=3.0103;FS=1.369;MQ=60.00;MQRankSum=0.00;QD=7.82;ReadPosRankSum=1.68;SOR=0.838;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:119,46:165:99:0|1:75786244_A_T:1299,0,5379:75786244
chr3	75786245	rs149660902	T	A	8787.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.720e-01;DB;DP=173;ExcessHet=6.9897;FS=3.367;MQ=59.99;MQRankSum=0.00;QD=14.08;ReadPosRankSum=0.368;SOR=0.977;VQSLOD=5.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:108,65:173:99:0|1:75786243_C_T:2473,0,5029:75786243
chr3	75786252	rs140641854	G	T	9535.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513e+00;DB;DP=172;ExcessHet=6.9897;FS=1.127;MQ=59.99;MQRankSum=0.00;QD=15.58;ReadPosRankSum=-2.020e-01;SOR=0.791;VQSLOD=4.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,70:172:99:2756,0,4489
chr3	75786256	rs138685434	T	A	8578.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564e+00;DB;DP=170;ExcessHet=6.9897;FS=3.333;MQ=59.99;MQRankSum=0.00;QD=14.23;ReadPosRankSum=0.013;SOR=0.933;VQSLOD=5.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:107,63:170:99:0|1:75786243_C_T:2357,0,4871:75786243
chr3	75786261	rs145586593	C	T	4426.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e-01;DB;DP=156;ExcessHet=6.9897;FS=2.880;MQ=59.99;MQRankSum=0.00;QD=7.42;ReadPosRankSum=-4.050e-01;SOR=0.891;VQSLOD=4.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:113,43:156:99:0|1:75786244_A_T:1236,0,5093:75786244
chr3	75786278	rs148458108	A	C	12343.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=152;ExcessHet=6.9897;FS=9.383;MQ=59.96;MQRankSum=0.00;QD=23.51;ReadPosRankSum=-7.870e-01;SOR=0.896;VQSLOD=4.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,94:152:99:0|1:75786278_A_C:3900,0,2553:75786278
chr3	75786288	rs147227180	A	G	2949.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=158;ExcessHet=3.9794;FS=6.372;MQ=59.98;MQRankSum=0.00;QD=7.76;ReadPosRankSum=-1.295e+00;SOR=1.041;VQSLOD=4.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:122,36:158:99:0|1:75786288_A_G:1130,0,5522:75786288
chr3	75786298	rs140045886	T	C	3051.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.63;DB;DP=159;ExcessHet=3.9794;FS=7.362;MQ=59.97;MQRankSum=0.00;QD=8.03;ReadPosRankSum=-1.327e+00;SOR=0.958;VQSLOD=4.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:129,30:159:99:0|1:75786288_A_G:1058,0,5784:75786288
chr3	75786302	rs138494720	G	A	6859.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=156;ExcessHet=6.9897;FS=11.249;MQ=59.93;MQRankSum=0.00;QD=13.24;ReadPosRankSum=0.293;SOR=0.976;VQSLOD=2.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:97,59:156:99:2218,0,4343
chr3	75786314	rs146447046	CCTACATTCT	C	10719.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=158;ExcessHet=6.9897;FS=14.750;MQ=59.93;MQRankSum=-1.410e+00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-9.200e-01;SOR=0.787;VQSLOD=0.180;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:79,79:158:99:0|1:75786278_A_C:3154,0,3524:75786278
chr3	75786337	rs147075123	G	A	2448.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.583e+00;DB;DP=161;ExcessHet=3.9794;FS=1.526;MQ=59.95;MQRankSum=-3.462e+00;NEGATIVE_TRAIN_SITE;QD=6.67;ReadPosRankSum=-3.230e-01;SOR=0.543;VQSLOD=-1.866e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:138,18:161:99:344,0,5884
chr3	75786354	rs139554848	G	A	2719.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=170;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=-3.116e+00;NEGATIVE_TRAIN_SITE;QD=6.80;ReadPosRankSum=0.833;SOR=0.727;VQSLOD=-1.737e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:141,29:170:99:759,0,5931
chr3	75786379	rs143986834	T	C	7474.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=169;ExcessHet=6.9897;FS=6.104;MQ=60.00;MQRankSum=0.00;QD=15.57;ReadPosRankSum=-9.190e-01;SOR=0.391;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,77:169:99:3017,0,3378
chr3	75786381	rs141124538	T	C	2985.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=173;ExcessHet=3.9794;FS=2.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=0.619;SOR=0.924;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:120,53:173:99:1401,0,4506
chr3	75786385	rs141017925	C	G	8731.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=178;ExcessHet=6.9897;FS=3.268;MQ=60.00;MQRankSum=0.00;QD=17.97;ReadPosRankSum=-6.120e-01;SOR=0.467;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,97:178:99:3936,0,2735
chr3	75786387	rs200576309	T	C	94.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.96;DB;DP=178;ExcessHet=3.0103;FS=1.725;MQ=60.00;MQRankSum=0.00;QD=0.53;ReadPosRankSum=0.229;SOR=0.894;VQSLOD=20.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:163,15:178:99:103,0,7295
chr3	75786417	rs147032196	T	C	9306.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=215;ExcessHet=6.9897;FS=2.486;MQ=59.99;MQRankSum=0.00;QD=16.07;ReadPosRankSum=0.642;SOR=0.518;VQSLOD=5.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:116,99:215:99:0|1:75786417_T_C:3790,0,4415:75786417
chr3	75786421	rs368279144	G	T	1161.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844e+00;DB;DP=217;ExcessHet=3.0103;FS=0.630;MQ=60.00;MQRankSum=0.00;QD=5.35;ReadPosRankSum=0.467;SOR=0.586;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:173,44:217:99:0|1:75786421_G_T:1170,0,7146:75786421
chr3	75786423	.	T	TTC	4014.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DP=220;ExcessHet=3.9794;FS=0.582;MQ=60.00;MQRankSum=0.00;QD=8.94;ReadPosRankSum=0.585;SOR=0.729;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:174,46:220:99:0|1:75786421_G_T:1200,0,7153:75786421
chr3	75786438	rs148249548	G	A	11020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.509;DB;DP=231;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=17.11;ReadPosRankSum=-3.300e-02;SOR=0.716;VQSLOD=5.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:114,117:231:99:0|1:75786417_T_C:4566,0,4541:75786417
chr3	75786440	rs145944373	C	T	18158.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=229;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=-4.050e-01;SOR=0.680;VQSLOD=6.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,146:229:99:5669,0,2342
chr3	75786450	rs142392552	G	A	11689.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=240;ExcessHet=6.9897;FS=1.104;MQ=59.99;MQRankSum=0.00;QD=17.09;ReadPosRankSum=-2.020e-01;SOR=0.813;VQSLOD=4.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:121,119:240:99:0|1:75786417_T_C:4651,0,4741:75786417
chr3	75786453	rs142321958	C	T	11903.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=241;ExcessHet=6.9897;FS=1.738;MQ=59.99;MQRankSum=0.00;QD=17.40;ReadPosRankSum=0.071;SOR=0.819;VQSLOD=4.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,125:241:99:4936,0,4450
chr3	75786469	rs200947229	G	A	3368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=243;ExcessHet=3.9794;FS=0.604;MQ=60.00;MQRankSum=0.00;QD=7.85;ReadPosRankSum=-9.980e-01;SOR=0.713;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:202,41:243:99:0|1:75786469_G_A:1076,0,8775:75786469
chr3	75786476	.	G	A	3257.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DP=250;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.44;ReadPosRankSum=-1.006e+00;SOR=0.693;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:210,40:250:99:0|1:75786469_G_A:1076,0,8775:75786469
chr3	75786490	rs199943124	C	G	2817.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.08;DB;DP=244;ExcessHet=3.9794;FS=0.648;MQ=60.00;MQRankSum=0.00;QD=6.52;ReadPosRankSum=-7.810e-01;SOR=0.781;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:210,34:244:99:0|1:75786469_G_A:793,0,8758:75786469
chr3	75786500	rs148025011	A	G	13866.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DB;DP=236;ExcessHet=6.9897;FS=4.964;MQ=60.00;MQRankSum=0.00;QD=19.26;ReadPosRankSum=-9.260e-01;SOR=0.496;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:118,118:236:99:0|1:75786500_A_G:4602,0,4612:75786500
chr3	75786501	rs372539402	T	A	2988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.09;DB;DP=238;ExcessHet=3.9794;FS=0.740;MQ=60.00;MQRankSum=0.00;QD=7.01;ReadPosRankSum=-3.550e-01;SOR=0.594;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:208,30:238:99:0|1:75786469_G_A:706,0,8806:75786469
chr3	75786506	rs150752942	T	C	8961.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=236;ExcessHet=6.9897;FS=2.602;MQ=60.00;MQRankSum=0.00;QD=12.52;ReadPosRankSum=-5.450e-01;SOR=0.577;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:149,87:236:99:0|1:75786506_T_C:3294,0,6070:75786506
chr3	75786515	rs145673522	G	A	14041.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=223;ExcessHet=6.9897;FS=4.057;MQ=60.00;MQRankSum=0.00;QD=20.00;ReadPosRankSum=-1.737e+00;SOR=0.508;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:111,112:223:99:0|1:75786500_A_G:4532,0,4354:75786500
chr3	75786518	rs140505105	A	C	3081.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.45;DB;DP=226;ExcessHet=6.9897;FS=3.506;MQ=60.00;MQRankSum=0.00;QD=4.35;ReadPosRankSum=-8.630e-01;SOR=0.678;VQSLOD=20.94;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:198,28:226:99:0|1:75786469_G_A:571,0,8352:75786469
chr3	75786521	rs138747541	G	A	2889.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=222;ExcessHet=6.9897;FS=3.612;MQ=60.00;MQRankSum=0.00;QD=4.11;ReadPosRankSum=-5.670e-01;SOR=0.744;VQSLOD=20.96;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:196,26:222:99:0|1:75786469_G_A:526,0,8377:75786469
chr3	75786533	rs147974422	T	G	8712.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=209;ExcessHet=6.9897;FS=1.162;MQ=60.00;MQRankSum=0.00;QD=12.59;ReadPosRankSum=0.238;SOR=0.568;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:132,77:209:99:0|1:75786506_T_C:2772,0,5599:75786506
chr3	75786555	rs141276988	C	CTG	11865.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.604e+00;DB;DP=185;ExcessHet=6.9897;FS=9.326;MQ=60.00;MQRankSum=0.00;QD=18.48;ReadPosRankSum=-6.690e-01;SOR=0.565;VQSLOD=3.40;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:109,76:185:99:0|1:75786555_C_CTG:2932,0,4426:75786555
chr3	75786572	rs149841758	T	C	10213.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.090e-01;DB;DP=180;ExcessHet=6.9897;FS=1.783;MQ=60.00;MQRankSum=0.00;QD=15.52;ReadPosRankSum=-1.107e+00;SOR=0.572;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:106,74:180:99:0|1:75786555_C_CTG:2821,0,4245:75786555
chr3	75786597	rs113865679	C	T	8978.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=176;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.48;ReadPosRankSum=0.098;SOR=0.676;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:108,68:176:99:0|1:75786597_C_T:2718,0,4341:75786597
chr3	75786607	rs113494751	C	T	8986.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519e+00;DB;DP=182;ExcessHet=6.9897;FS=1.134;MQ=60.00;MQRankSum=0.00;QD=14.50;ReadPosRankSum=0.589;SOR=0.765;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:112,70:182:99:0|1:75786597_C_T:2677,0,4596:75786597
chr3	75786610	rs112828508	T	G	8923.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DB;DP=178;ExcessHet=6.9897;FS=0.538;MQ=60.00;MQRankSum=0.00;QD=14.49;ReadPosRankSum=0.959;SOR=0.786;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:107,71:178:99:0|1:75786597_C_T:2731,0,4357:75786597
chr3	75786619	rs111548839	T	C	8499.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.347e+00;DB;DP=179;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.10;ReadPosRankSum=1.01;SOR=0.683;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:107,72:179:99:0|1:75786597_C_T:2713,0,4429:75786597
chr3	75786623	rs112829115	G	T	4289.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510e+00;DB;DP=181;ExcessHet=6.9897;FS=3.785;MQ=60.00;MQRankSum=0.00;QD=7.06;ReadPosRankSum=0.146;SOR=0.678;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:139,42:181:99:927,0,5352
chr3	75786628	rs3009023	G	C	635.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757e+00;DB;DP=181;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.51;ReadPosRankSum=-5.340e-01;SOR=0.654;VQSLOD=22.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:147,34:181:99:643,0,5788
chr3	75786670	rs112822201	G	A	5938.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-02;DB;DP=222;ExcessHet=6.9897;FS=4.488;MQ=60.00;MQRankSum=0.00;QD=8.10;ReadPosRankSum=-2.210e-01;SOR=0.856;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,70:222:99:1825,0,5372
chr3	75786681	rs111677009	G	A	19219.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=229;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.22;ReadPosRankSum=0.125;SOR=0.675;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,164:229:99:5696,0,1301
chr3	75786737	rs78297221	A	T	11049.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=213;ExcessHet=6.9897;FS=1.100;MQ=60.00;MQRankSum=0.00;QD=16.97;ReadPosRankSum=0.00;SOR=0.611;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,72:213:99:2875,0,4077
chr3	75786740	rs74699492	C	G	6536.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=218;ExcessHet=6.9897;FS=0.593;MQ=60.00;MQRankSum=0.00;QD=9.08;ReadPosRankSum=1.64;SOR=0.627;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:153,65:218:99:0|1:75786740_C_G:2260,0,6352:75786740
chr3	75786741	rs79103664	A	G	19683.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191e+00;DB;DP=217;ExcessHet=6.9897;FS=0.554;MQ=60.00;MQRankSum=0.00;QD=27.45;ReadPosRankSum=0.270;SOR=0.599;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:76,141:217:99:0|1:75786741_A_G:5893,0,2836:75786741
chr3	75786753	rs3009020	C	T	7453.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.850;DB;DP=216;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.54;ReadPosRankSum=-1.384e+00;SOR=0.695;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:136,80:216:99:1|0:75786741_A_G:2489,0,5512:75786741
chr3	75786754	rs77394685	G	T	5388.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=215;ExcessHet=6.9897;FS=0.623;MQ=60.00;MQRankSum=0.00;QD=7.65;ReadPosRankSum=1.75;SOR=0.624;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:161,54:215:99:0|1:75786740_C_G:1777,0,6682:75786740
chr3	75786759	rs75759940	T	C	18645.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=212;ExcessHet=6.9897;FS=0.542;MQ=60.00;MQRankSum=0.00;QD=26.52;ReadPosRankSum=1.03;SOR=0.661;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:80,132:212:99:0|1:75786741_A_G:5455,0,3160:75786741
chr3	75786764	rs139062880	C	CT	5016.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=213;ExcessHet=6.9897;FS=0.633;MQ=60.00;MQRankSum=0.00;QD=7.09;ReadPosRankSum=0.819;SOR=0.620;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:164,49:213:99:0|1:75786740_C_G:1633,0,6943:75786740
chr3	75786773	rs76175438	T	A	11136.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.158e+00;DB;DP=200;ExcessHet=6.9897;FS=1.111;MQ=60.00;MQRankSum=0.00;QD=16.14;ReadPosRankSum=0.169;SOR=0.772;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:125,75:200:99:2845,0,5185
chr3	75786784	rs78490340	T	C	4119.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.253e+00;DB;DP=196;ExcessHet=6.9897;FS=2.276;MQ=60.00;MQRankSum=0.00;QD=6.03;ReadPosRankSum=-2.208e+00;SOR=0.584;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:158,38:196:99:0|1:75786740_C_G:1147,0,6727:75786740
chr3	75786802	rs77826574	G	A	12614.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=185;ExcessHet=6.9897;FS=1.768;MQ=60.00;MQRankSum=0.00;QD=19.96;ReadPosRankSum=-8.380e-01;SOR=0.882;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,77:185:99:3184,0,3364
chr3	75786817	rs201263569	CACATTCATT	C	2547.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e-01;DB;DP=205;ExcessHet=3.9794;FS=1.413;MQ=60.00;MQRankSum=0.00;QD=5.16;ReadPosRankSum=1.57;SOR=0.559;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:144,46:205:99:1413,0,6530
chr3	75786827	rs79635065	A	T	19030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.33;DB;DP=207;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.86;ReadPosRankSum=-1.665e+00;SOR=0.704;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:86,121:207:99:0|1:75786741_A_G:4984,0,3319:75786741
chr3	75786832	rs11122676	C	T	24716.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=207;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.96;ReadPosRankSum=2.45;SOR=0.671;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,161:207:99:6712,0,1383
chr3	75786845	rs62250105	T	C	22601.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.178e+00;DB;DP=216;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.36;ReadPosRankSum=-1.489e+00;SOR=0.763;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,135:216:99:5601,0,2930
chr3	75786854	rs76921234	A	T	14095.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.419e+00;DB;DP=233;ExcessHet=6.9897;FS=0.537;MQ=60.00;MQRankSum=0.00;QD=16.66;ReadPosRankSum=0.928;SOR=0.723;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:131,102:233:99:3716,0,5179
chr3	75786866	rs79516801	G	T	6600.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.714e+00;DB;DP=265;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.07;ReadPosRankSum=-4.340e-01;SOR=0.750;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:204,61:265:99:0|1:75786866_G_T:1968,0,8673:75786866
chr3	75786892	rs76826286	A	C	11772.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.231e+00;DB;DP=362;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=9.49;ReadPosRankSum=0.963;SOR=0.629;VQSLOD=4.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:259,103:362:99:0|1:75786866_G_T:3677,0,11057:75786866
chr3	75786899	rs78828372	T	C	12603.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=386;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=9.73;ReadPosRankSum=1.33;SOR=0.649;VQSLOD=4.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:272,114:386:99:0|1:75786866_G_T:4016,0,11576:75786866
chr3	75786916	rs78906544	C	A	15572.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.979e+00;DB;DP=451;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=10.44;ReadPosRankSum=1.01;SOR=0.705;VQSLOD=4.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:308,143:451:99:0|1:75786866_G_T:5146,0,12753:75786866
chr3	75786919	rs77101176	A	T	15842.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=464;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=10.40;ReadPosRankSum=0.948;SOR=0.682;VQSLOD=4.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:316,148:464:99:0|1:75786866_G_T:5249,0,12861:75786866
chr3	75786921	.	G	A	1429.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930e-01;DP=470;ExcessHet=3.9794;FS=1.748;MQ=59.98;MQRankSum=0.00;QD=1.49;ReadPosRankSum=-1.820e-01;SOR=0.879;VQSLOD=3.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:414,56:470:99:443,0,16221
chr3	75786965	rs112478715	C	T	16911.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.682e+00;DB;DP=601;ExcessHet=6.9897;FS=2.641;MQ=59.99;MQRankSum=0.00;QD=9.54;ReadPosRankSum=2.06;SOR=0.577;VQSLOD=4.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:431,170:601:99:0|1:75786965_C_T:5345,0,17165:75786965
chr3	75786991	rs112348731	C	T	17861.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.090e+00;DB;DP=584;ExcessHet=6.9897;FS=6.514;MQ=60.00;MQRankSum=0.00;QD=10.58;ReadPosRankSum=-1.212e+00;SOR=0.912;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:430,154:584:99:0|1:75786965_C_T:4862,0,17317:75786965
chr3	75786993	rs149887072	T	A	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DB;DP=582;ExcessHet=3.0103;FS=0.892;MQ=60.00;MQRankSum=0.00;QD=0.30;ReadPosRankSum=1.08;SOR=0.899;VQSLOD=20.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:520,62:582:99:185,0,19660
chr3	75787015	rs111576331	C	T	15203.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080e+00;DB;DP=558;ExcessHet=6.9897;FS=1.231;MQ=60.00;MQRankSum=0.00;QD=9.46;ReadPosRankSum=2.13;SOR=0.815;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:382,176:558:99:0|1:75787015_C_T:5908,0,15156:75787015
chr3	75787032	rs111273070	T	C	11185.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.297e+00;DB;DP=512;ExcessHet=6.9897;FS=15.088;MQ=60.00;MQRankSum=0.00;QD=7.49;ReadPosRankSum=-3.303e+00;SOR=1.694;VQSLOD=9.24;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:410,102:512:99:0|1:75787032_T_C:2836,0,16731:75787032
chr3	75787043	rs184833776	G	A	13045.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.683e+00;DB;DP=465;ExcessHet=6.9897;FS=2.858;MQ=60.00;MQRankSum=0.00;QD=9.61;ReadPosRankSum=-1.855e+00;SOR=0.930;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:324,141:465:99:0|1:75787015_C_T:5043,0,13910:75787015
chr3	75787047	.	G	GACTTATA	9919.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.425e+00;DP=417;ExcessHet=6.9897;FS=3.905;MQ=60.00;MQRankSum=0.00;QD=7.82;ReadPosRankSum=-8.840e-01;SOR=0.985;VQSLOD=5.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:325,92:417:99:1910,0,13831
chr3	75787049	rs201485350	C	A	2893.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.560e-01;DB;DP=421;ExcessHet=3.9794;FS=3.752;MQ=60.00;MQRankSum=0.00;QD=3.55;ReadPosRankSum=3.03;SOR=0.388;VQSLOD=20.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:368,53:421:99:910,0,16164
chr3	75787057	rs145650973	G	A	24260.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079e+00;DB;DP=392;ExcessHet=6.9897;FS=40.895;MQ=60.00;MQRankSum=0.00;QD=20.90;ReadPosRankSum=-9.670e-01;SOR=2.194;VQSLOD=0.938;culprit=FS	GT:AD:DP:GQ:PL	0/1:183,209:392:99:8194,0,6870
chr3	75787081	rs143791478	A	T	5969.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.59;DB;DP=339;ExcessHet=6.9897;FS=26.084;MQ=60.00;MQRankSum=0.00;QD=5.77;ReadPosRankSum=-2.930e+00;SOR=2.476;VQSLOD=6.68;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:268,71:339:99:0|1:75787015_C_T:2234,0,11369:75787015
chr3	75787169	rs146848254	G	A	3766.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.00;DB;DP=225;ExcessHet=6.9897;FS=36.053;MQ=60.00;MQRankSum=0.00;QD=4.89;ReadPosRankSum=-1.238e+00;SOR=3.247;VQSLOD=2.88;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:197,28:225:99:0|1:75787169_G_A:555,0,7845:75787169
chr3	75787186	rs150410646	C	T	2628.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021e+00;DB;DP=221;ExcessHet=6.9897;FS=31.232;MQ=60.00;MQRankSum=0.00;QD=3.56;ReadPosRankSum=-1.226e+00;SOR=3.097;VQSLOD=5.20;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:196,25:221:99:0|1:75787169_G_A:384,0,7924:75787169
chr3	75787199	rs138214171	A	C	1973.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=247;ExcessHet=3.9794;FS=7.542;MQ=59.99;MQRankSum=0.00;QD=3.86;ReadPosRankSum=1.71;SOR=1.381;VQSLOD=3.18;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:213,34:247:99:0|1:75787199_A_C:680,0,8901:75787199
chr3	75787221	rs199936493	C	T	2544.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=235;ExcessHet=3.9794;FS=20.048;MQ=59.99;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=-4.010e-01;SOR=1.960;VQSLOD=-3.240e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:202,33:235:99:808,0,8523
chr3	75787224	rs142706866	C	G	2264.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.88;DB;DP=237;ExcessHet=6.9897;FS=13.132;MQ=59.99;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=3.05;ReadPosRankSum=-1.010e+00;SOR=1.902;VQSLOD=-1.985e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:194,29:237:99:650,0,8306
chr3	75787236	rs146030585	C	T	1330.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=228;ExcessHet=3.9794;FS=6.865;MQ=59.99;MQRankSum=0.00;QD=2.81;ReadPosRankSum=-1.607e+00;SOR=1.402;VQSLOD=2.74;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:201,27:228:99:0|1:75787199_A_C:499,0,8430:75787199
chr3	75787266	.	CCT	C	746.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.75;DP=229;ExcessHet=3.9794;FS=1.896;MQ=59.99;MQRankSum=0.00;QD=1.61;ReadPosRankSum=-1.673e+00;SOR=1.007;VQSLOD=4.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:206,23:229:99:355,0,8661
chr3	75787269	.	G	A	916.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DP=230;ExcessHet=3.9794;FS=4.166;MQ=59.99;MQRankSum=0.00;QD=1.99;ReadPosRankSum=-1.501e+00;SOR=1.234;VQSLOD=3.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:204,25:230:99:475,0,8571
chr3	75787279	rs200448866	A	T	1390.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.61;DB;DP=217;ExcessHet=6.9897;FS=1.860;MQ=59.98;MQRankSum=-2.742e+00;NEGATIVE_TRAIN_SITE;QD=1.99;ReadPosRankSum=-4.660e-01;SOR=0.844;VQSLOD=-1.874e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:186,31:217:99:0|1:75787279_A_T:808,0,7963:75787279
chr3	75787288	rs201350943	T	C	1558.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=211;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=-2.510e+00;NEGATIVE_TRAIN_SITE;QD=2.31;ReadPosRankSum=-1.533e+00;SOR=0.771;VQSLOD=-1.674e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:180,31:211:99:0|1:75787279_A_T:742,0,7717:75787279
chr3	75787298	rs143229208	T	C	1672.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DB;DP=215;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=-2.536e+00;NEGATIVE_TRAIN_SITE;QD=2.44;ReadPosRankSum=-1.403e+00;SOR=0.729;VQSLOD=-1.685e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:181,34:215:99:0|1:75787279_A_T:844,0,8044:75787279
chr3	75787299	.	G	A	1140.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466e+00;DP=215;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=2.57;ReadPosRankSum=-1.220e+00;SOR=0.724;VQSLOD=3.40;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:187,28:215:99:0|1:75787299_G_A:571,0,8062:75787299
chr3	75787302	rs201966533	T	C	1199.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DB;DP=218;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=2.68;ReadPosRankSum=-7.540e-01;SOR=0.679;VQSLOD=3.63;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:189,29:218:99:0|1:75787299_G_A:649,0,7849:75787299
chr3	75787313	rs372030153	C	G	1347.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=220;ExcessHet=3.9794;FS=1.723;MQ=60.00;MQRankSum=0.00;QD=3.00;ReadPosRankSum=-2.320e-01;SOR=0.733;VQSLOD=20.68;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:190,30:220:99:0|1:75787299_G_A:719,0,8009:75787299
chr3	75787321	rs202223162	C	T	1277.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.625e+00;DB;DP=228;ExcessHet=3.9794;FS=0.790;MQ=60.00;MQRankSum=0.00;QD=2.78;ReadPosRankSum=0.331;SOR=0.851;VQSLOD=20.64;culprit=QD	GT:AD:DP:GQ:PL	0/1:194,32:228:99:723,0,8013
chr3	75787455	rs201246393	A	G	753.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=389;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.05;ReadPosRankSum=0.073;SOR=0.720;VQSLOD=20.50;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:361,28:389:77:0|1:75787455_A_G:77,0,15063:75787455
chr3	75787458	rs199620349	G	A	571.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=395;ExcessHet=3.0103;FS=8.123;MQ=60.00;MQRankSum=0.00;QD=1.45;ReadPosRankSum=-8.900e-02;SOR=1.533;VQSLOD=18.13;culprit=QD	GT:AD:DP:GQ:PL	0/1:345,50:395:99:580,0,13951
chr3	75787462	rs200782802	G	A	846.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DB;DP=398;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.16;ReadPosRankSum=0.141;SOR=0.787;VQSLOD=20.51;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:369,29:398:80:0|1:75787455_A_G:80,0,15698:75787455
chr3	75787463	.	C	T	840.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-02;DP=394;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.16;ReadPosRankSum=0.069;SOR=0.787;VQSLOD=20.50;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:365,29:394:77:0|1:75787455_A_G:77,0,15748:75787455
chr3	75787464	rs147751121	C	T	15740.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=397;ExcessHet=6.9897;FS=27.651;MQ=60.00;MQRankSum=0.00;QD=14.40;ReadPosRankSum=-1.037e+00;SOR=2.029;VQSLOD=7.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:239,158:397:99:5943,0,9096
chr3	75787474	rs202070324	G	A	947.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DB;DP=409;ExcessHet=3.9794;FS=2.097;MQ=60.00;MQRankSum=0.00;QD=1.26;ReadPosRankSum=0.765;SOR=0.979;VQSLOD=20.40;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:382,27:409:80:0|1:75787455_A_G:80,0,16370:75787455
chr3	75787476	rs147074785	C	T	2824.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496e+00;DB;DP=415;ExcessHet=3.9794;FS=9.646;MQ=60.00;MQRankSum=0.00;QD=4.08;ReadPosRankSum=-5.900e-01;SOR=1.341;VQSLOD=17.38;culprit=QD	GT:AD:DP:GQ:PL	0/1:308,79:415:99:1380,0,12158
chr3	75787486	rs142604589	C	T	21563.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.704e+00;DB;DP=429;ExcessHet=6.9897;FS=18.252;MQ=60.00;MQRankSum=0.00;QD=18.41;ReadPosRankSum=-5.520e-01;SOR=1.480;VQSLOD=10.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:205,224:429:99:8384,0,7522
chr3	75787511	rs200040093	C	A	908.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=450;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.02;ReadPosRankSum=0.350;SOR=0.778;VQSLOD=20.48;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:419,31:450:41:0|1:75787455_A_G:41,0,17720:75787455
chr3	75787516	rs200086689	C	G	25298.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=457;ExcessHet=6.9897;FS=9.317;MQ=60.00;MQRankSum=0.00;QD=19.73;ReadPosRankSum=0.271;SOR=1.050;VQSLOD=18.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:225,232:457:99:0|1:75787516_C_G:9012,0,8886:75787516
chr3	75787519	rs200805142	C	A	25432.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.990e-01;DB;DP=457;ExcessHet=6.9897;FS=9.309;MQ=60.00;MQRankSum=0.00;QD=19.73;ReadPosRankSum=0.456;SOR=1.015;VQSLOD=18.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:227,230:457:99:0|1:75787516_C_G:8971,0,8892:75787516
chr3	75787520	rs181132116	T	G	27395.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=461;ExcessHet=6.9897;FS=8.234;MQ=60.00;MQRankSum=0.00;QD=21.07;ReadPosRankSum=1.27;SOR=0.943;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:196,265:461:99:10531,0,7257
chr3	75787637	rs145802847	C	T	28729.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885e+00;DB;DP=359;ExcessHet=6.9897;FS=1.145;MQ=60.00;MQRankSum=0.00;QD=25.91;ReadPosRankSum=0.945;SOR=0.613;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,244:359:99:9674,0,3946
chr3	75787645	rs141065192	GAA	G	28414.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572e+00;DB;DP=343;ExcessHet=6.9897;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=0.690;SOR=0.809;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:108,235:343:99:9605,0,3769
chr3	75787679	rs74620322	T	C	24076.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=317;ExcessHet=6.9897;FS=1.784;MQ=60.00;MQRankSum=0.00;QD=24.25;ReadPosRankSum=-7.520e-01;SOR=0.723;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,216:317:99:8630,0,3532
chr3	75787688	rs77688099	T	A	24134.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DB;DP=312;ExcessHet=6.9897;FS=1.125;MQ=60.00;MQRankSum=0.00;QD=24.43;ReadPosRankSum=-1.035e+00;SOR=0.701;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,207:312:99:8752,0,3712
chr3	75787702	rs77377261	C	G	25394.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.837e+00;DB;DP=305;ExcessHet=6.9897;FS=1.809;MQ=59.99;MQRankSum=0.00;QD=25.29;ReadPosRankSum=-2.669e+00;SOR=0.848;VQSLOD=4.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:102,203:305:99:8456,0,3509
chr3	75787726	rs143705658	G	A	42093.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.15;DB;DP=286;ExcessHet=3.0103;FS=1.365;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.11;ReadPosRankSum=-1.807e+00;SOR=0.466;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,286:286:99:12850,878,0
chr3	75787732	rs74776730	A	C	10406.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.668e+00;DB;DP=285;ExcessHet=6.9897;FS=1.106;MQ=59.98;MQRankSum=0.00;QD=10.45;ReadPosRankSum=-1.817e+00;SOR=0.623;VQSLOD=3.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:171,114:285:99:2791,0,5916
chr3	75787739	rs141238251	A	T	45835.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.020e-01;DB;DP=295;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.94;ReadPosRankSum=-4.130e-01;SOR=0.283;VQSLOD=6.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,295:295:99:13710,932,0
chr3	75787770	rs74873974	C	T	1746.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DB;DP=334;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.559;QD=2.30;ReadPosRankSum=1.11;SOR=0.695;VQSLOD=-8.060e-02;culprit=QD	GT:AD:DP:GQ:PL	0/1:256,78:334:99:1557,0,9256
chr3	75787794	rs75467043	A	G	30743.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-01;DB;DP=363;ExcessHet=6.9897;FS=3.518;MQ=59.93;MQRankSum=-1.467e+00;QD=24.91;ReadPosRankSum=1.49;SOR=0.494;VQSLOD=0.215;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:101,262:363:99:9124,0,2656
chr3	75787801	rs200891949	T	C	11848.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930e-01;DB;DP=370;ExcessHet=6.9897;FS=3.657;MQ=59.94;MQRankSum=-1.971e+00;QD=9.68;ReadPosRankSum=0.577;SOR=0.463;VQSLOD=-3.536e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:305,65:370:99:1803,0,12983
chr3	75787802	rs201430954	G	A	11845.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.572e+00;DB;DP=370;ExcessHet=6.9897;FS=3.657;MQ=59.94;MQRankSum=-1.961e+00;QD=9.68;ReadPosRankSum=0.397;SOR=0.466;VQSLOD=-3.000e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:305,65:370:99:1800,0,13019
chr3	75787809	rs142370851	T	C	21385.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=364;ExcessHet=6.9897;FS=0.523;MQ=59.94;MQRankSum=-1.237e+00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-5.620e-01;SOR=0.612;VQSLOD=2.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:239,125:364:99:4052,0,9291
chr3	75787869	rs201766078	C	T	26951.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e+00;DB;DP=358;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.50;ReadPosRankSum=-1.142e+00;SOR=0.723;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:92,266:358:99:0|1:75787869_C_T:10929,0,4755:75787869
chr3	75787870	rs199839139	A	G	27368.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.72;DB;DP=354;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.36;ReadPosRankSum=-9.990e-01;SOR=0.701;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:90,264:354:99:0|1:75787869_C_T:11139,0,4740:75787869
chr3	75787876	rs200554516	G	T	26938.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.203e+00;DB;DP=351;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.63;ReadPosRankSum=-1.431e+00;SOR=0.728;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:89,262:351:99:0|1:75787869_C_T:11001,0,4771:75787869
chr3	75787880	rs201714521	A	G	10506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.76;DB;DP=351;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.54;ReadPosRankSum=-1.700e-02;SOR=0.740;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:200,151:351:99:5382,0,9625
chr3	75787897	rs141136744	T	C	10720.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467e+00;DB;DP=334;ExcessHet=6.9897;FS=0.550;MQ=60.00;MQRankSum=0.00;QD=12.32;ReadPosRankSum=0.113;SOR=0.766;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:235,99:334:99:3334,0,11236
chr3	75787927	rs140371017	A	G	21195.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=287;ExcessHet=6.9897;FS=1.859;MQ=60.00;MQRankSum=0.00;QD=26.46;ReadPosRankSum=1.85;SOR=0.882;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:82,205:287:99:0|1:75787927_A_G:8155,0,5702:75787927
chr3	75787949	rs148003742	C	T	21704.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872e+00;DB;DP=259;ExcessHet=6.9897;FS=1.190;MQ=60.00;MQRankSum=0.00;QD=28.15;ReadPosRankSum=0.327;SOR=0.773;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:66,193:259:99:0|1:75787927_A_G:8067,0,5683:75787927
chr3	75787961	rs147348598	A	G	10792.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=252;ExcessHet=6.9897;FS=1.769;MQ=60.00;MQRankSum=0.00;QD=14.35;ReadPosRankSum=0.485;SOR=0.678;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:168,84:252:99:0|1:75787927_A_G:2983,0,10157:75787927
chr3	75787962	rs148805158	G	C	7666.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DB;DP=253;ExcessHet=3.9794;FS=6.121;MQ=60.00;MQRankSum=0.00;QD=14.66;ReadPosRankSum=-3.220e-01;SOR=1.000;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:149,104:253:99:0|1:75787927_A_G:3841,0,9300:75787927
chr3	75787996	rs142456725	C	T	3262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=264;ExcessHet=3.9794;FS=9.516;MQ=60.00;MQRankSum=0.00;QD=6.47;ReadPosRankSum=0.106;SOR=1.192;VQSLOD=18.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:173,91:264:99:0|1:75787996_C_T:2626,0,5236:75787996
chr3	75788010	rs151311432	A	C	26942.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.77;DB;DP=274;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.33;ReadPosRankSum=4.30;SOR=0.726;VQSLOD=21.00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,274:274:99:1|1:75787996_C_T:11244,829,0:75787996
chr3	75788023	rs139365447	C	T	15382.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.830e-01;DB;DP=269;ExcessHet=6.9897;FS=0.524;MQ=60.00;MQRankSum=0.00;QD=20.84;ReadPosRankSum=1.18;SOR=0.738;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:98,171:269:99:0|1:75787996_C_T:5838,0,2583:75787996
chr3	75788028	rs150689808	G	C	10571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=258;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.48;ReadPosRankSum=0.807;SOR=0.659;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:177,81:258:99:0|1:75787996_C_T:2052,0,6351:75787996
chr3	75788068	rs144262325	A	C	9259.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.702e+00;DB;DP=277;ExcessHet=6.9897;FS=0.531;MQ=60.00;MQRankSum=0.00;QD=11.50;ReadPosRankSum=-3.060e-01;SOR=0.743;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:190,87:277:99:2329,0,9337
chr3	75788076	rs146581110	A	C	19025.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.64;DB;DP=282;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.87;ReadPosRankSum=-1.780e+00;SOR=0.665;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,190:282:99:6471,0,3810
chr3	75788115	rs145020778	G	A	20782.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=315;ExcessHet=6.9897;FS=2.509;MQ=60.00;MQRankSum=0.00;QD=23.94;ReadPosRankSum=0.558;SOR=0.875;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,203:315:99:8314,0,3496
chr3	75788130	rs145829878	C	A	12152.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.636e+00;DB;DP=314;ExcessHet=6.9897;FS=1.752;MQ=60.00;MQRankSum=0.00;QD=13.59;ReadPosRankSum=1.19;SOR=0.848;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:223,91:314:99:2189,0,13088
chr3	75788150	rs143871834	A	AG	16655.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.145;DB;DP=314;ExcessHet=6.9897;FS=0.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=-1.300e-01;SOR=0.741;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:204,110:314:99:4003,0,11256
chr3	75788152	rs148372120	T	C	18192.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=317;ExcessHet=6.9897;FS=1.141;MQ=60.00;MQRankSum=0.00;QD=23.78;ReadPosRankSum=1.17;SOR=0.747;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,112:317:99:4821,0,7648
chr3	75788199	rs146090776	T	C	8622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.332e+00;DB;DP=303;ExcessHet=6.9897;FS=0.535;MQ=60.00;MQRankSum=0.00;QD=8.97;ReadPosRankSum=0.520;SOR=0.631;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:218,85:303:99:1619,0,11827
chr3	75788226	rs142645929	C	A	14925.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.960e-01;DB;DP=236;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.88;ReadPosRankSum=0.922;SOR=0.710;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,80:236:99:4335,0,4994
chr3	75788227	rs138751618	A	G	21325.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320e-01;DB;DP=253;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.17;ReadPosRankSum=0.510;SOR=0.710;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,175:253:99:7118,0,4802
chr3	75788230	.	C	T	1385.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DP=229;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.83;ReadPosRankSum=2.81;SOR=0.733;VQSLOD=21.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:181,48:229:99:1175,0,9808
chr3	75788245	rs142742998	C	T	3715.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.227e+00;DB;DP=204;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.17;ReadPosRankSum=1.04;SOR=0.699;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,67:204:99:1762,0,7221
chr3	75788258	rs147362558	C	A	17158.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.357e+00;DB;DP=207;ExcessHet=6.9897;FS=0.554;MQ=60.00;MQRankSum=0.00;QD=24.76;ReadPosRankSum=-1.002e+00;SOR=0.761;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,129:207:99:5052,0,3930
chr3	75788281	rs139032275	T	C	16080.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.135e+00;DB;DP=183;ExcessHet=6.9897;FS=0.552;MQ=60.00;MQRankSum=0.00;QD=25.57;ReadPosRankSum=-6.760e-01;SOR=0.768;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,123:183:99:4973,0,2683
chr3	75788291	rs138877004	A	G	7299.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.84;DB;DP=162;ExcessHet=6.9897;FS=2.564;MQ=60.00;MQRankSum=0.00;QD=12.94;ReadPosRankSum=-1.707e+00;SOR=0.899;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,26:162:56:56,0,5326
chr3	75788292	rs149444593	T	A	14638.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.637e+00;DB;DP=174;ExcessHet=6.9897;FS=1.153;MQ=60.00;MQRankSum=0.00;QD=25.11;ReadPosRankSum=-2.750e-01;SOR=0.613;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,115:174:99:4568,0,2281
chr3	75788314	rs148579340	T	C	3441.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=175;ExcessHet=3.9794;FS=4.593;MQ=60.00;MQRankSum=0.00;QD=8.25;ReadPosRankSum=1.45;SOR=0.430;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,60:175:99:1470,0,4332
chr3	75788316	rs146102310	C	T	5181.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134e+00;DB;DP=168;ExcessHet=6.9897;FS=2.593;MQ=60.00;MQRankSum=0.00;QD=8.98;ReadPosRankSum=-3.500e-02;SOR=0.929;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:140,28:168:99:362,0,5588
chr3	75788366	rs146603260	C	A	5163.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.770e+00;DB;DP=296;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.65;ReadPosRankSum=-1.296e+00;SOR=0.681;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:198,98:296:99:2279,0,6180
chr3	75788376	rs201176377	G	C	534.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DB;DP=299;ExcessHet=3.0103;FS=0.684;MQ=60.00;MQRankSum=0.00;QD=1.99;ReadPosRankSum=-1.320e-01;SOR=0.817;VQSLOD=20.55;culprit=QD	GT:AD:DP:GQ:PL	0/1:227,42:299:99:543,0,8968
chr3	75788382	.	C	T	510.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498e+00;DP=310;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.65;ReadPosRankSum=0.262;SOR=0.776;VQSLOD=20.56;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:279,31:310:99:0|1:75788382_C_T:519,0,11957:75788382
chr3	75788390	.	A	C	485.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.422;DP=313;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.90;ReadPosRankSum=0.454;SOR=0.801;VQSLOD=20.46;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:285,28:313:99:0|1:75788382_C_T:378,0,12196:75788382
chr3	75788394	rs201974353	C	G	470.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.261;DB;DP=318;ExcessHet=3.9794;FS=0.963;MQ=60.00;MQRankSum=0.00;QD=0.85;ReadPosRankSum=0.093;SOR=0.929;VQSLOD=20.39;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:289,29:318:99:0|1:75788382_C_T:324,0,12194:75788382
chr3	75788411	rs149968740	G	C	330.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=332;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.56;ReadPosRankSum=-4.480e-01;SOR=0.655;VQSLOD=20.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:288,44:332:99:258,0,10591
chr3	75788432	rs143693332	T	A	272.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=337;ExcessHet=3.0103;FS=5.587;MQ=60.00;MQRankSum=0.00;QD=0.81;ReadPosRankSum=0.462;SOR=1.044;VQSLOD=20.56;culprit=QD	GT:AD:DP:GQ:PL	0/1:289,48:337:99:281,0,10009
chr3	75788434	rs148855808	G	T	8198.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745e+00;DB;DP=340;ExcessHet=6.9897;FS=0.542;MQ=60.00;MQRankSum=0.00;QD=8.36;ReadPosRankSum=0.026;SOR=0.759;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:225,115:340:99:2485,0,6950
chr3	75788484	rs140451185	A	G	7588.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DB;DP=273;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.73;ReadPosRankSum=-3.030e-01;SOR=0.750;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:171,102:273:99:2187,0,4858
chr3	75788506	rs138499023	GA	G	22025.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.890e-01;DB;DP=217;ExcessHet=6.9897;FS=2.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=0.859;SOR=0.530;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,181:217:99:7161,0,639
chr3	75788513	rs201554897	G	C	19487.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029e+00;DB;DP=218;ExcessHet=6.9897;FS=0.605;MQ=60.00;MQRankSum=0.00;QD=26.92;ReadPosRankSum=1.74;SOR=0.632;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,165:218:99:6261,0,1468
chr3	75788532	rs150393678	T	G	12744.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DB;DP=157;ExcessHet=6.9897;FS=1.372;MQ=60.00;MQRankSum=0.00;QD=21.75;ReadPosRankSum=0.068;SOR=0.559;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,126:157:99:3855,0,734
chr3	75788545	rs145910729	C	A	4677.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.870e+00;DB;DP=122;ExcessHet=6.9897;FS=11.285;MQ=60.00;MQRankSum=0.00;QD=9.95;ReadPosRankSum=0.393;SOR=0.218;VQSLOD=16.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,50:122:99:1366,0,2498
chr3	75788564	rs371099657	TA	T	343.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=77;ExcessHet=3.0103;FS=0.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.98;ReadPosRankSum=2.15;SOR=0.868;VQSLOD=6.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,19:77:99:352,0,1737
chr3	75788565	rs142249828	A	G	5491.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=79;ExcessHet=6.9897;FS=5.737;MQ=60.00;MQRankSum=0.00;QD=18.87;ReadPosRankSum=0.642;SOR=0.338;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,43:79:99:2093,0,431
chr3	75788566	.	A	G	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.44;ReadPosRankSum=-9.750e-01;SOR=0.544;VQSLOD=20.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:58,19:77:99:351,0,1968
chr3	75788585	rs149380253	T	C	7138.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=64;ExcessHet=6.9897;FS=20.116;MQ=60.00;MQRankSum=0.00;QD=29.50;ReadPosRankSum=-1.395e+00;SOR=0.024;VQSLOD=9.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,53:64:99:2029,0,291
chr3	75788604	rs138993648	C	T	5860.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.320e+00;DB;DP=46;ExcessHet=6.9897;FS=2.214;MQ=60.00;MQRankSum=0.00;QD=32.38;ReadPosRankSum=-6.540e-01;SOR=0.256;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,40:46:99:0|1:75788604_C_T:1618,0,216:75788604
chr3	75788611	rs145814487	A	T	5477.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.063e+00;DB;DP=39;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.02;ReadPosRankSum=-6.540e-01;SOR=0.620;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,33:39:99:0|1:75788604_C_T:1472,0,144:75788604
chr3	75788614	rs145147578	T	TA	5249.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=0.057;SOR=0.914;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,34:40:99:0|1:75788604_C_T:1400,0,150:75788604
chr3	75788633	rs141414472	T	C	616.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.372e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=-1.196e+00;SOR=0.085;VQSLOD=5.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,4:26:79:79,0,988
chr3	75788644	rs1837273	T	C	3017.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.84;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=32.80;ReadPosRankSum=0.975;SOR=2.808;VQSLOD=-1.259e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,20:23:66:0|1:75788644_T_C:831,0,66:75788644
chr3	75788653	rs1837274	A	T	2716.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=59.82;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=33.54;ReadPosRankSum=0.889;SOR=2.920;VQSLOD=-1.359e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,18:21:72:0|1:75788644_T_C:747,0,72:75788644
chr3	75788661	rs1837275	A	C	2468.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=59.78;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=1.38;SOR=3.073;VQSLOD=-1.476e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,18:20:72:0|1:75788644_T_C:745,0,72:75788644
chr3	75788673	rs146957553	C	A	32.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.256e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.30;ReadPosRankSum=1.74;SOR=0.052;VQSLOD=20.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,2:14:41:41,0,489
chr3	75788690	.	T	C	51.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.13;ReadPosRankSum=1.22;SOR=0.105;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:60:60,0,330
chr3	75788695	rs112816785	T	C	95.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.13;ReadPosRankSum=0.967;SOR=0.061;VQSLOD=21.10;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:60:60,0,315
chr3	75790217	rs146721022	G	A	394.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.94;ReadPosRankSum=-1.150e+00;SOR=1.179;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:113,0,32
chr3	75790270	rs144039803	G	C	586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=1.01;QD=16.28;ReadPosRankSum=0.532;SOR=0.212;VQSLOD=0.299;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:278,0,299
chr3	75790277	rs200177374	C	T	87.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.516;NEGATIVE_TRAIN_SITE;QD=2.23;ReadPosRankSum=0.239;SOR=0.029;VQSLOD=-1.351e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,2:16:38:38,0,539
chr3	75790287	rs201104925	T	G	249.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.678;NEGATIVE_TRAIN_SITE;QD=4.98;ReadPosRankSum=1.53;SOR=0.086;VQSLOD=-9.658e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,3:20:53:53,0,656
chr3	75790296	rs149035077	C	G	3296.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.798;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=0.832;SOR=3.185;VQSLOD=-1.399e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:75:1125,75,0
chr3	75790298	rs149061937	C	T	1771.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=18.46;ReadPosRankSum=0.123;SOR=1.512;VQSLOD=4.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,14:25:99:0|1:75790298_C_T:555,0,420:75790298
chr3	75790306	rs141550391	G	A	1858.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.823e+00;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=18.22;ReadPosRankSum=0.096;SOR=1.517;VQSLOD=4.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,16:28:99:0|1:75790298_C_T:618,0,447:75790298
chr3	75790312	rs201872086	C	T	275.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=36;ExcessHet=3.9794;FS=7.725;MQ=60.00;MQRankSum=0.00;QD=3.57;ReadPosRankSum=0.485;SOR=0.010;VQSLOD=19.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,6:36:99:146,0,1189
chr3	75790318	rs139938220	C	T	4305.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.292e+00;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=31.90;ReadPosRankSum=-1.067e+00;SOR=0.823;VQSLOD=5.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,36:38:31:1380,31,0
chr3	75790370	rs181149645	A	C	9606.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=95;ExcessHet=6.9897;FS=18.546;MQ=60.00;MQRankSum=0.00;QD=32.68;ReadPosRankSum=1.63;SOR=0.095;VQSLOD=9.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,73:95:99:0|1:75790370_A_C:3043,0,623:75790370
chr3	75790376	rs185794240	T	C	9976.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DB;DP=102;ExcessHet=6.9897;FS=28.416;MQ=60.00;MQRankSum=0.00;QD=32.18;ReadPosRankSum=1.15;SOR=0.057;VQSLOD=7.35;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,78:102:99:0|1:75790370_A_C:3170,0,608:75790370
chr3	75790405	.	T	A	2900.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707e+00;DP=150;ExcessHet=6.9897;FS=2.290;MQ=60.00;MQRankSum=0.00;QD=6.43;ReadPosRankSum=-8.680e-01;SOR=0.507;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,37:150:99:945,0,3774
chr3	75790406	rs200545959	G	C	11683.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.674e+00;DB;DP=152;ExcessHet=6.9897;FS=9.129;MQ=60.00;MQRankSum=0.00;QD=28.02;ReadPosRankSum=-6.110e-01;SOR=0.273;VQSLOD=18.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,96:152:99:3998,0,1438
chr3	75790409	rs201742642	T	C	14761.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.587e+00;DB;DP=157;ExcessHet=6.9897;FS=11.585;MQ=60.00;MQRankSum=0.00;QD=31.48;ReadPosRankSum=-8.890e-01;SOR=0.234;VQSLOD=14.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,116:157:99:4780,0,1375
chr3	75790410	rs199519591	G	A	13028.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.420e+00;DB;DP=156;ExcessHet=6.9897;FS=9.706;MQ=60.00;MQRankSum=0.00;QD=29.95;ReadPosRankSum=-8.780e-01;SOR=0.244;VQSLOD=17.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,99:156:99:4116,0,1429
chr3	75790444	rs141084845	G	A	2333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364e+00;DB;DP=192;ExcessHet=6.9897;FS=3.209;MQ=60.00;MQRankSum=0.00;QD=3.87;ReadPosRankSum=-1.498e+00;SOR=1.008;VQSLOD=20.59;culprit=QD	GT:AD:DP:GQ:PL	0/1:159,33:192:99:354,0,5009
chr3	75790446	rs79202307	G	T	5345.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999e+00;DB;DP=205;ExcessHet=6.9897;FS=3.916;MQ=60.00;MQRankSum=0.00;QD=8.57;ReadPosRankSum=-5.790e-01;SOR=0.441;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:151,54:205:99:0|1:75790446_G_T:1804,0,6345:75790446
chr3	75790447	rs76526276	G	A	5402.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.144e+00;DB;DP=207;ExcessHet=6.9897;FS=2.976;MQ=60.00;MQRankSum=0.00;QD=8.60;ReadPosRankSum=-4.900e-01;SOR=0.450;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:153,54:207:99:0|1:75790446_G_T:1801,0,6367:75790446
chr3	75790466	rs78571006	G	T	5762.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529e+00;DB;DP=222;ExcessHet=6.9897;FS=1.269;MQ=60.00;MQRankSum=0.00;QD=8.61;ReadPosRankSum=-7.530e-01;SOR=0.563;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:164,58:222:99:0|1:75790446_G_T:1834,0,6653:75790446
chr3	75790479	rs79902868	C	T	6130.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.258e+00;DB;DP=212;ExcessHet=6.9897;FS=7.234;MQ=60.00;MQRankSum=0.00;QD=9.40;ReadPosRankSum=2.15;SOR=0.636;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,104:212:99:2467,0,3556
chr3	75790513	rs149568659	T	C	26068.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=210;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-1.245e+00;SOR=0.924;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,210:210:99:1|1:75790513_T_C:8515,643,0:75790513
chr3	75790527	rs144222217	T	C	4302.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.894e+00;DB;DP=200;ExcessHet=6.9897;FS=1.305;MQ=60.00;MQRankSum=0.00;QD=6.84;ReadPosRankSum=1.39;SOR=0.573;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:152,48:200:99:0|1:75790513_T_C:1020,0,5154:75790513
chr3	75790542	rs141840121	G	T	11798.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e+00;DB;DP=177;ExcessHet=6.9897;FS=6.124;MQ=60.00;MQRankSum=0.00;QD=20.48;ReadPosRankSum=-9.450e-01;SOR=1.129;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,112:177:99:0|1:75790513_T_C:4305,0,1544:75790513
chr3	75790554	rs139142483	C	T	4523.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;DB;DP=160;ExcessHet=6.9897;FS=11.195;MQ=60.00;MQRankSum=0.00;QD=8.54;ReadPosRankSum=-9.660e-01;SOR=1.439;VQSLOD=15.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:98,62:160:99:0|1:75790513_T_C:1699,0,3517:75790513
chr3	75790583	rs139307180	G	A	6303.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=112;ExcessHet=6.9897;FS=50.102;MQ=60.00;MQRankSum=0.00;QD=16.55;ReadPosRankSum=-1.138e+00;SOR=2.210;VQSLOD=-4.959e+00;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,55:112:99:0|1:75790513_T_C:2094,0,1465:75790513
chr3	75790705	rs149673212	C	T	368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.756;DB;DP=74;ExcessHet=3.9794;FS=2.232;MQ=60.00;MQRankSum=0.00;QD=2.15;ReadPosRankSum=0.546;SOR=0.430;VQSLOD=20.74;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,9:74:99:0|1:75790513_T_C:182,0,2680:75790513
chr3	75790717	rs145158381	G	A	704.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766e+00;DB;DP=86;ExcessHet=3.9794;FS=3.302;MQ=60.00;MQRankSum=0.00;QD=3.81;ReadPosRankSum=0.756;SOR=0.375;VQSLOD=21.05;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:72,14:86:99:0|1:75790513_T_C:437,0,3226:75790513
chr3	75790726	rs141438932	T	C	893.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DB;DP=103;ExcessHet=3.9794;FS=0.848;MQ=60.00;MQRankSum=0.00;QD=4.38;ReadPosRankSum=0.271;SOR=0.550;VQSLOD=20.88;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:86,17:103:99:0|1:75790513_T_C:497,0,3557:75790513
chr3	75790730	rs138228408	A	T	888.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.149e+00;DB;DP=105;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.27;ReadPosRankSum=0.136;SOR=0.576;VQSLOD=20.91;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:87,18:105:99:0|1:75790513_T_C:507,0,3638:75790513
chr3	75790733	rs202161426	C	G	929.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.898e+00;DB;DP=107;ExcessHet=3.9794;FS=0.806;MQ=60.00;MQRankSum=0.00;QD=4.32;ReadPosRankSum=0.259;SOR=0.555;VQSLOD=20.88;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:88,19:107:99:0|1:75790513_T_C:516,0,4010:75790513
chr3	75790747	rs147424643	C	G	1262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e+00;DB;DP=132;ExcessHet=3.9794;FS=2.345;MQ=60.00;MQRankSum=0.00;QD=4.74;ReadPosRankSum=-5.610e-01;SOR=0.462;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:106,26:132:99:0|1:75790513_T_C:691,0,4235:75790513
chr3	75790797	rs147946451	C	T	335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=209;ExcessHet=3.0103;FS=0.869;MQ=60.00;MQRankSum=0.00;QD=1.60;ReadPosRankSum=2.97;SOR=0.568;VQSLOD=19.63;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:186,23:209:99:0|1:75790797_C_T:344,0,7972:75790797
chr3	75790810	.	G	GT	250.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DP=239;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.05;ReadPosRankSum=3.21;SOR=0.744;VQSLOD=3.71;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:218,21:239:99:0|1:75790797_C_T:259,0,9181:75790797
chr3	75790811	rs199577560	G	T	241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e-01;DB;DP=238;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.01;ReadPosRankSum=3.08;SOR=0.751;VQSLOD=19.48;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:217,21:238:99:0|1:75790797_C_T:250,0,9307:75790797
chr3	75790814	rs200578600	C	T	213.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=246;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.87;ReadPosRankSum=2.48;SOR=0.679;VQSLOD=19.84;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:224,22:246:99:0|1:75790797_C_T:222,0,9717:75790797
chr3	75790838	rs140982339	C	T	165.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-01;DB;DP=281;ExcessHet=3.0103;FS=0.824;MQ=60.00;MQRankSum=0.00;QD=0.59;ReadPosRankSum=-2.125e+00;SOR=0.570;VQSLOD=19.90;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:258,23:281:99:0|1:75790797_C_T:174,0,10974:75790797
chr3	75790860	rs150203551	C	T	57.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=283;ExcessHet=3.0103;FS=3.406;MQ=60.00;MQRankSum=0.00;QD=0.20;ReadPosRankSum=-3.456e+00;SOR=0.588;VQSLOD=19.20;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:266,17:283:66:0|1:75790797_C_T:66,0,11316:75790797
chr3	75790972	rs118003039	C	T	8601.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300e-01;DB;DP=206;ExcessHet=1.5490;FS=2.059;MQ=60.00;MQRankSum=0.00;QD=21.29;ReadPosRankSum=-9.600e-02;SOR=0.865;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,101:206:99:2671,0,2860
chr3	75791063	rs115619493	T	A	3346.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310e+00;DB;DP=98;ExcessHet=3.9794;FS=3.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=1.51;SOR=0.416;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,51:98:99:1520,0,1292
chr3	75791101	rs150733486	G	T	300.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.140e-01;DB;DP=70;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.55;ReadPosRankSum=-5.070e-01;SOR=0.558;VQSLOD=20.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:65,5:70:58:58,0,2191
chr3	75791117	rs150241647	T	TTA	594.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=48;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.51;ReadPosRankSum=0.498;SOR=0.161;VQSLOD=6.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,6:48:99:123,0,1687
chr3	75791129	rs114578206	C	G	540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826e+00;DB;DP=43;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.79;ReadPosRankSum=2.11;SOR=0.198;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,6:43:99:141,0,1499
chr3	75986542	rs62269816	A	G	1662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=48.71;MQRankSum=-3.376e+00;QD=24.10;ReadPosRankSum=0.956;SOR=1.478;VQSLOD=-2.453e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:391,0,197
chr3	75986622	rs9631539	C	G	3235.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.39;DB;DP=52;ExcessHet=6.9897;FS=1.758;MQ=51.08;MQRankSum=-6.456e+00;QD=17.68;ReadPosRankSum=0.825;SOR=1.201;VQSLOD=-4.007e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:966,0,710
chr3	75986695	rs79015247	G	A	1262.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.648e+00;DB;DP=172;ExcessHet=6.9897;FS=14.793;MQ=51.51;MQRankSum=-4.901e+00;NEGATIVE_TRAIN_SITE;QD=2.10;ReadPosRankSum=0.156;SOR=0.531;VQSLOD=-4.291e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,35:172:99:450,0,5005
chr3	75986717	rs78834776	G	A	2459.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.224e+00;DB;DP=204;ExcessHet=6.9897;FS=6.187;MQ=51.32;MQRankSum=-3.787e+00;NEGATIVE_TRAIN_SITE;QD=3.53;ReadPosRankSum=1.25;SOR=0.487;VQSLOD=-2.594e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:157,47:204:99:657,0,6207
chr3	75986741	.	G	T	398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003e+00;DP=244;ExcessHet=3.9794;FS=9.983;MQ=52.09;MQRankSum=-6.284e+00;QD=0.81;ReadPosRankSum=2.05;SOR=1.172;VQSLOD=-4.925e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:213,31:244:99:133,0,7565
chr3	75986874	rs7610755	G	C	10766.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DB;DP=115;ExcessHet=3.0103;FS=20.756;MQ=59.25;MQRankSum=10.13;POSITIVE_TRAIN_SITE;QD=29.91;ReadPosRankSum=3.84;SOR=0.023;VQSLOD=-4.967e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,104:115:99:2958,0,192
chr3	75986950	rs75380808	A	G	40.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.160e-01;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=0.73;ReadPosRankSum=2.12;SOR=0.056;VQSLOD=21.79;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,2:26:12:0|1:75986924_T_G:12,0,1002:75986924
chr3	75986961	rs72886589	T	C	73.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.78;ReadPosRankSum=2.02;SOR=0.026;VQSLOD=20.57;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,2:20:21:0|1:75986924_T_G:21,0,876:75986924
chr3	75986975	rs73841023	A	T	121.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.91;ReadPosRankSum=1.79;SOR=0.048;VQSLOD=20.85;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,2:13:51:0|1:75986924_T_G:51,0,456:75986924
chr3	75986988	rs369400512	G	C	114.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.18;ReadPosRankSum=0.253;SOR=0.188;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:69:0|1:75986924_T_G:69,0,204:75986924
chr3	75986992	.	T	A	32.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.15;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:75986924_T_G:39,0,39:75986924
chr3	75987001	.	T	TGGAATTCTGTTGGAATTC	37.23	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.62;SOR=1.609;VQSLOD=4.44;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:75986924_T_G:45,3,0:75986924
chr3	77576860	rs775716	G	A	305.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.94;ReadPosRankSum=0.00;SOR=3.056;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	77599763	rs2029004	C	T	421.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.40;ReadPosRankSum=-2.530e-01;SOR=2.833;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:48:106,0,48
chr3	77600273	rs3796291	C	A	377.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.99;ReadPosRankSum=1.61;SOR=1.765;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:74,0,35
chr3	77607070	rs5850333	A	AC	3151.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.89;ReadPosRankSum=-1.387e+00;SOR=1.201;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:56:447,0,56
chr3	77644039	rs775720	A	G	181.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:68,0,32
chr3	77645946	rs35328861	CT	C	985.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=19;ExcessHet=3.0103;FS=4.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=-3.810e-01;SOR=1.781;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,7:19:99:129,0,244
chr3	77645984	rs775718	A	G	932.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=14;ExcessHet=3.9794;FS=1.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=1.66;SOR=0.343;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:135,0,292
chr3	77667044	rs1523768	G	A	992.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=4.977;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr3	77681865	rs1451617	T	A	2643.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.410e-01;DB;DP=22;ExcessHet=3.0103;FS=11.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=-6.280e-01;SOR=3.230;VQSLOD=13.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,6:22:99:143,0,473
chr3	78656351	rs9831685	A	T	928.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=26.86;SOR=4.174;VQSLOD=5.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:196,18,0
chr3	78663634	rs2872006	T	C	478.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360e+00;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=1.69;SOR=1.508;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:487,0,557
chr3	78663656	rs2872005	C	T	560.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-02;DB;DP=49;ExcessHet=3.0103;FS=1.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=2.53;SOR=1.197;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,20:49:99:569,0,856
chr3	78663956	rs1027832	G	A	1016.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=79;ExcessHet=3.0103;FS=1.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-1.566e+00;SOR=0.905;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,36:79:99:1025,0,1084
chr3	78664093	rs1027833	C	T	243.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=5.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=0.524;SOR=3.258;VQSLOD=17.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:35:74,0,35
chr3	78666765	rs9839790	T	C	4435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.750e-01;DB;DP=135;ExcessHet=3.9794;FS=2.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=1.77;SOR=0.842;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,75:135:99:1980,0,1589
chr3	78676391	rs11713043	C	T	555.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.349e+00;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-9.360e-01;SOR=0.930;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,21:48:99:564,0,853
chr3	78676422	rs7614084	G	A	870.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.820e+00;DB;DP=79;ExcessHet=3.0103;FS=2.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-4.050e-01;SOR=0.439;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,35:79:99:879,0,1412
chr3	78676467	rs7636043	A	G	8583.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DB;DP=108;ExcessHet=3.0103;FS=2.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.820;SOR=0.862;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3198,324,0
chr3	78680055	rs2249589	T	C	156.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.329e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-1.778e+00;SOR=0.693;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:165,0,175
chr3	78680578	rs6548592	T	C	875.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.158e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.35;ReadPosRankSum=0.650;SOR=1.102;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:333,30,0
chr3	78682880	rs2660738	T	C	350.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.15;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-1.000e-02;SOR=0.610;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	78700779	rs3925684	C	A	1899.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.27;SOR=5.464;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:603,48,0
chr3	78700838	rs58872086	G	A	504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.654;DB;DP=46;ExcessHet=3.0103;FS=3.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=-1.239e+00;SOR=1.371;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,18:46:99:513,0,751
chr3	78701170	rs60505291	T	C	46.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.61;ReadPosRankSum=1.47;SOR=0.223;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:55:55,0,183
chr3	78701217	rs7619956	A	G	801.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.26;SOR=6.184;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr3	78706519	rs9818170	C	T	828.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.271e+00;DB;DP=22;ExcessHet=3.9794;FS=4.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=1.03;SOR=0.180;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:356,0,373
chr3	78706553	rs3832208	AT	A	327.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.315;SOR=0.770;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:123,0,186
chr3	78706646	rs3732662	C	G	126.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:71,0,34
chr3	78708810	rs10662787	A	AATAT	399.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=14;ExcessHet=3.9794;FS=1.427;MQ=60.00;MQRankSum=0.00;QD=9.28;ReadPosRankSum=1.19;SOR=1.112;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:273,0,348
chr3	78709044	rs9829907	G	A	303.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-01;DB;DP=21;ExcessHet=3.9794;FS=8.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.22;ReadPosRankSum=-1.324e+00;SOR=0.105;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:101,0,454
chr3	78709068	rs76880412	CTTTT	C	1030.02	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.67;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.85;ReadPosRankSum=1.28;SOR=3.767;VQSLOD=4.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:155,12,0
chr3	78711485	rs7634971	A	G	422.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.83;SOR=4.977;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	78717343	rs2271151	C	T	2523.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=90;ExcessHet=3.9794;FS=3.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=1.18;SOR=0.893;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1158,0,1195
chr3	78719577	rs9309810	C	G	688.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.401;SOR=0.534;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:342,0,458
chr3	78796078	rs2304503	C	A	1073.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.200e-01;DB;DP=34;ExcessHet=1.5490;FS=2.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=-7.310e-01;SOR=1.038;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,8:34:99:111,0,668
chr3	79557155	rs62257610	C	T	409.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.612e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.060e-01;SOR=0.484;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:275,0,217
chr3	81539382	rs846	C	T	704.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=1.90;SOR=1.893;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:339,24,0
chr3	81627202	rs201758548	C	T	711.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321e+00;DB;DP=56;ExcessHet=3.0103;FS=1.052;MQ=60.00;MQRankSum=0.00;QD=12.70;ReadPosRankSum=-4.800e-01;SOR=0.487;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,32:56:99:720,0,566
chr3	81643167	rs2172397	T	C	8495.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.93;SOR=1.416;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2668,260,0
chr3	81810702	rs11391701	A	AG	3744.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.30;SOR=2.618;VQSLOD=4.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:69:810,69,0
chr3	85156425	rs9846802	T	C	89.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-8.420e-01;SOR=1.329;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:98,0,64
chr3	85156727	rs150922432	CTTTCTTTCT	C	1366.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DB;DP=64;ExcessHet=3.0103;FS=3.602;MQ=60.00;MQRankSum=0.00;QD=21.35;ReadPosRankSum=-1.639e+00;SOR=0.359;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,36:64:99:1375,0,1027
chr3	85156782	.	T	TTTTC	392.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.52;ReadPosRankSum=0.817;SOR=1.244;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:401,0,223
chr3	85156854	rs60535953	CT	C	41.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.32;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:13:50,0,13
chr3	85434950	rs3086134	C	CTT,CTTT	3140.52	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.41;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=-2.980e-01;QD=27.07;ReadPosRankSum=0.716;SOR=0.976;VQSLOD=0.614;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,14,13:27:99:900,280,198,273,0,200
chr3	85775566	rs73142842	A	G	410.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=30;ExcessHet=3.0103;FS=1.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.998;SOR=0.368;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:419,0,370
chr3	85932380	rs73147157	T	C	566.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.97;DB;DP=28;ExcessHet=3.0103;FS=7.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=-6.510e-01;SOR=3.113;VQSLOD=15.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:575,0,327
chr3	87100160	rs4858947	T	C	1908.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.72;POSITIVE_TRAIN_SITE;QD=31.52;SOR=3.215;VQSLOD=4.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:600,51,0
chr3	87100309	rs2575753	T	C	7724.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.392e+00;DB;DP=70;ExcessHet=3.0103;FS=2.228;MQ=50.39;MQRankSum=-1.550e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=0.928;SOR=0.526;VQSLOD=-1.034e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2129,210,0
chr3	87100434	rs7619398	G	A	5752.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.726;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=50.40;MQRankSum=0.629;NEGATIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=1.12;SOR=0.728;VQSLOD=-3.010e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1856,177,0
chr3	87100893	rs2256481	G	A	5293.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.637e+00;DB;DP=41;ExcessHet=3.0103;FS=1.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=0.453;SOR=0.508;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1251,123,0
chr3	87100988	rs2256479	T	C	2738.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.75;DB;DP=22;ExcessHet=3.0103;FS=2.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=1.52;SOR=1.099;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:795,66,0
chr3	87275442	rs72591121	G	GA	352.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=59.70;MQRankSum=0.00;QD=20.76;ReadPosRankSum=0.732;SOR=2.303;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:58:142,0,58
chr3	87295049	rs11540913	T	C	2646.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.80;SOR=2.303;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:960,78,0
chr3	87299238	rs2270666	G	C	70.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:78,0,73
chr3	87303064	rs368297778	CA	C	31.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.81;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:40:40,0,40
chr3	88105264	rs3732776	A	C	819.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.84;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=0.562;SOR=2.066;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr3	88188420	rs9813894	G	A	1650.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.736e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=-1.382e+00;SOR=0.719;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:788,63,0
chr3	88189341	rs7653652	T	C	8268.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=105;ExcessHet=3.0103;FS=3.583;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=0.189;SOR=0.454;VQSLOD=7.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3449,314,0
chr3	88190493	rs5850831	T	TC	490.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=0.842;SOR=0.560;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr3	88190768	rs7432826	C	A	12158.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=0.853;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3191,322,0
chr3	88190809	rs7432838	C	T	8543.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=90;ExcessHet=3.0103;FS=3.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=-7.210e-01;SOR=0.469;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2781,269,0
chr3	88199179	rs6551277	T	C	14067.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-1.607e+00;SOR=0.835;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5121,512,0
chr3	88199185	rs11374933	T	TC	13673.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.169;DB;DP=171;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-1.608e+00;SOR=0.794;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5211,514,0
chr3	88199298	rs6551278	T	C	15268.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.280e-01;DB;DP=178;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=0.648;SOR=0.703;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,178:178:99:5331,532,0
chr3	89176645	rs9835094	A	G	325.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=1.96;SOR=0.804;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr3	89456555	rs3792572	T	A	1539.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.684e+00;DB;DP=111;ExcessHet=3.0103;FS=0.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.37;SOR=0.602;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,62:111:99:1548,0,1293
chr3	89480265	rs12639506	A	G	641.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=52;ExcessHet=3.0103;FS=1.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.332e+00;SOR=0.495;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,24:52:99:650,0,781
chr3	89498619	rs1028011	A	G	3055.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710e-01;DB;DP=43;ExcessHet=3.9794;FS=2.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=2.65;SOR=1.318;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,28:43:99:863,0,406
chr3	90264768	rs6803112	A	G	5714.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=30.08;SOR=1.265;VQSLOD=4.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1784,191,0
chr3	93593119	rs6123	T	C	2252.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=56.54;MQRankSum=2.66;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=2.11;SOR=0.752;VQSLOD=-1.043e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,26:53:99:566,0,555
chr3	93754080	rs374163446	CA	C	82.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=0.00;QD=4.32;ReadPosRankSum=0.075;SOR=1.022;VQSLOD=5.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,3:6:36:52,0,36
chr3	94225786	rs1906643	G	T	3428.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.233e+00;DB;DP=37;ExcessHet=3.0103;FS=19.011;MQ=52.29;MQRankSum=1.99;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=1.06;SOR=1.877;VQSLOD=-2.563e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1306,111,0
chr3	96068956	rs4857197	T	C	2442.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.96;SOR=2.070;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:796,66,0
chr3	96069450	rs34039875	CAT	C	2205.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=-2.410e-01;SOR=0.655;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,15:36:99:517,0,929
chr3	96078864	rs1514422	G	A	748.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380e-01;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=1.21;SOR=0.681;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,36:79:99:757,0,950
chr3	96336209	.	G	A	103.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.02;MQRankSum=1.28;QD=17.23;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=-3.689e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:112,0,109
chr3	96336236	rs7625370	G	T	481.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.76;QD=31.35;SOR=5.136;VQSLOD=4.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr3	96386290	rs6800804	A	T	1849.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.50;SOR=1.747;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:608,51,0
chr3	96386392	rs6438649	C	T	2521.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.55;POSITIVE_TRAIN_SITE;QD=34.08;SOR=1.288;VQSLOD=4.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:931,84,0
chr3	97194422	rs7624823	T	G	2092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=3.611;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:688,54,0
chr3	97365038	rs301948	G	A	7148.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=121;ExcessHet=3.9794;FS=1.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-5.500e-01;SOR=0.806;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,54:121:99:1299,0,1644
chr3	97365074	rs301949	A	G	6010.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.800e-01;DB;DP=103;ExcessHet=3.9794;FS=1.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=1.02;SOR=0.792;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,45:103:99:1040,0,1592
chr3	97367230	rs3214668	C	CA	6372.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=69;ExcessHet=3.9794;FS=3.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=0.543;SOR=0.965;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,31:69:99:1004,0,1314
chr3	97487239	rs1567058	C	T	340.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=9;ExcessHet=3.9794;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=0.732;SOR=2.387;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,202
chr3	97499654	rs10935082	T	A	1181.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=1.82;SOR=1.106;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:175,0,220
chr3	97506811	rs144210599	G	T	601.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.810e-01;DB;DP=59;ExcessHet=3.0103;FS=2.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.19;ReadPosRankSum=0.476;SOR=0.991;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,25:59:99:610,0,928
chr3	97517118	rs4857294	G	C	610.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.90;ReadPosRankSum=1.26;SOR=2.833;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr3	97582864	rs13068614	A	G	32.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-4.310e-01;SOR=0.223;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
chr3	97591153	rs17301717	C	T	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507e+00;DB;DP=58;ExcessHet=3.0103;FS=2.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=1.52;SOR=0.402;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:733,0,949
chr3	97593485	rs2279897	C	T	1012.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=66;ExcessHet=3.0103;FS=4.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-5.130e-01;SOR=1.182;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,34:66:99:1021,0,831
chr3	97607290	rs13065340	G	A	508.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960e-01;DB;DP=50;ExcessHet=3.0103;FS=1.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=-1.290e+00;SOR=0.505;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:517,0,689
chr3	97634253	rs831877	C	T	706.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=0.577;SOR=0.693;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:146,0,65
chr3	97660084	rs11544446	C	T	720.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964e+00;DB;DP=48;ExcessHet=3.0103;FS=1.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=-1.553e+00;SOR=0.468;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,31:48:99:729,0,410
chr3	97660198	rs832089	A	G	1595.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.123e+00;DB;DP=23;ExcessHet=3.9794;FS=8.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=-9.800e-02;SOR=0.121;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:332,0,381
chr3	97666183	rs2307808	TCTC	T	2723.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.320e-01;DB;DP=61;ExcessHet=3.9794;FS=4.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=2.34;SOR=0.395;VQSLOD=6.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,30:61:99:1162,0,1391
chr3	97669935	rs34242266	G	A	70.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.63;SOR=1.179;VQSLOD=18.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr3	97673268	rs832079	A	C	8319.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=1.238;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2413,222,0
chr3	97678150	rs10715243	GT	G	156.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.000e-03;DB;DP=3;ExcessHet=3.9794;FS=2.036;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=0.00;SOR=0.248;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,1:3:11:11,0,21
chr3	97686575	rs699304	T	C	746.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=-1.600e-01;SOR=0.954;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:99:121,0,438
chr3	97711997	rs937130	G	A	372.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.124;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:138,0,134
chr3	97726747	rs832032	T	A	5950.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.763e+00;DB;DP=64;ExcessHet=3.0103;FS=1.648;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=1.08;SOR=0.562;VQSLOD=6.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,63:64:99:2104,149,0
chr3	97727555	rs832031	C	T	327.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.48;SOR=4.615;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	97727586	rs60099312	CT	C	577.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.02;SOR=4.174;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr3	97727642	.	CAAAA	C,CAA	606.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.90;SOR=5.994;VQSLOD=5.36;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,3,1:4:29:152,29,37,99,0,88
chr3	97727727	rs832030	G	C	3348.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.570e-01;DB;DP=27;ExcessHet=3.0103;FS=1.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.16;ReadPosRankSum=-1.100e+00;SOR=0.933;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1038,81,0
chr3	97727753	rs832029	G	A	4062.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.400e-01;DB;DP=38;ExcessHet=3.0103;FS=2.453;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=-1.015e+00;SOR=0.504;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1410,114,0
chr3	97744611	rs832041	A	G	1446.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.66;DB;DP=25;ExcessHet=1.5490;FS=2.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.37;ReadPosRankSum=0.234;SOR=0.223;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:885,75,0
chr3	97806999	rs6439602	T	C	2421.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.048e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=-7.330e-01;SOR=0.701;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:205,0,361
chr3	97851475	rs4857328	G	C	2344.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004e+00;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.45;ReadPosRankSum=0.636;SOR=1.179;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,17:24:99:536,0,170
chr3	97851998	rs9845327	A	C	3027.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580e-01;DB;DP=63;ExcessHet=1.5490;FS=0.740;MQ=50.72;MQRankSum=-4.678e+00;NEGATIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=0.103;SOR=0.588;VQSLOD=-3.374e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:722,0,959
chr3	97852083	rs9826076	C	T	2880.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.494;DB;DP=63;ExcessHet=1.5490;FS=3.568;MQ=52.25;MQRankSum=-3.240e-01;NEGATIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=-1.820e-01;SOR=0.935;VQSLOD=-2.145e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,26:63:99:734,0,1066
chr3	97868174	rs4857075	T	G	2499.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=59.66;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=0.670;SOR=0.765;VQSLOD=5.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,27:42:99:863,0,417
chr3	97868419	rs4241468	G	A	7806.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=185;ExcessHet=1.5490;FS=0.949;MQ=57.77;MQRankSum=1.50;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=-9.890e-01;SOR=0.609;VQSLOD=-2.669e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,98:185:99:2551,0,2101
chr3	97868616	rs4379004	C	T	4221.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=85;ExcessHet=1.5490;FS=0.668;MQ=50.05;MQRankSum=-7.283e+00;QD=25.43;ReadPosRankSum=0.018;SOR=0.606;VQSLOD=-4.386e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1256,0,1135
chr3	97868795	rs4857076	A	G	5608.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=111;ExcessHet=1.5490;FS=0.528;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-3.610e-01;SOR=0.764;VQSLOD=6.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:66,45:111:99:1159,0,1547
chr3	97868970	rs12639519	T	A	2580.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=31.47;ReadPosRankSum=1.42;SOR=0.602;VQSLOD=5.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,17:29:99:599,0,274
chr3	97887293	rs10212361	A	G	266.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=-8.420e-01;SOR=1.270;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,131
chr3	97887495	rs10212222	C	G	2969.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DB;DP=78;ExcessHet=1.5490;FS=0.685;MQ=56.87;MQRankSum=-1.263e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=0.882;SOR=0.598;VQSLOD=-3.097e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,34:78:99:812,0,1217
chr3	97887865	rs4133320	G	A	5359.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-01;DB;DP=105;ExcessHet=1.5490;FS=5.710;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=0.315;SOR=0.387;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1224,0,1522
chr3	97887985	rs4133321	T	A	2879.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=51;ExcessHet=1.5490;FS=2.707;MQ=59.55;MQRankSum=2.39;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.83;ReadPosRankSum=0.077;SOR=0.543;VQSLOD=0.425;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,20:51:99:549,0,850
chr3	97888042	rs4133322	A	T	2701.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=51;ExcessHet=1.5490;FS=2.727;MQ=53.50;MQRankSum=1.07;NEGATIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=0.352;SOR=0.895;VQSLOD=-2.461e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:525,0,800
chr3	97888197	rs7623031	C	T	2279.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=58.44;MQRankSum=-6.690e-01;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=1.68;SOR=0.652;VQSLOD=0.940;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,23:53:99:645,0,876
chr3	97888337	rs13082608	C	T	1401.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=2.16;SOR=0.765;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,43:77:99:1410,0,898
chr3	97926221	rs7430016	T	C	2662.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DB;DP=52;ExcessHet=1.5490;FS=5.545;MQ=58.39;MQRankSum=-1.478e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.85;ReadPosRankSum=1.17;SOR=1.460;VQSLOD=-1.103e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,34:52:99:941,0,384
chr3	97926354	rs9837299	A	G	5131.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.81;DB;DP=96;ExcessHet=1.5490;FS=0.000;MQ=50.24;MQRankSum=-1.397e+00;NEGATIVE_TRAIN_SITE;QD=23.98;ReadPosRankSum=-5.000e-01;SOR=0.646;VQSLOD=-2.901e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,44:96:99:1324,0,1205
chr3	97926696	.	C	CTATTAATCTTGTCA	958.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;DP=17;ExcessHet=1.5490;FS=1.317;MQ=52.64;MQRankSum=-2.006e+00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=-2.271e+00;SOR=0.473;VQSLOD=1.01;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:14,3:17:68:68,0,764
chr3	97983040	rs4241470	C	T	158.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482e+00;DB;DP=17;ExcessHet=3.0103;FS=2.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=0.293;SOR=0.148;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:167,0,339
chr3	97983117	rs4241471	A	G	465.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.210e-01;DB;DP=43;ExcessHet=3.0103;FS=3.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-8.200e-01;SOR=0.307;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:474,0,692
chr3	97983257	rs2132894	C	G	7533.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e-01;DB;DP=119;ExcessHet=1.5490;FS=0.000;MQ=59.51;MQRankSum=-3.417e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=0.132;SOR=0.725;VQSLOD=0.511;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:69,50:119:99:0|1:97983257_C_G:1822,0,4294:97983257
chr3	97983265	rs4241472	C	A	1829.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e+00;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=59.00;MQRankSum=-3.795e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=1.46;SOR=0.745;VQSLOD=-3.200e-03;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:72,48:120:99:0|1:97983257_C_G:1838,0,4278:97983257
chr3	97983374	rs4857358	A	G	2050.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.078e+00;DB;DP=157;ExcessHet=3.0103;FS=4.730;MQ=56.82;MQRankSum=-7.160e+00;QD=13.06;ReadPosRankSum=-3.870e-01;SOR=0.456;VQSLOD=-3.946e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:74,83:157:99:2059,0,2075
chr3	97983391	rs2173236	C	G	7984.62	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.398e+00;DB;DP=168;ExcessHet=1.5490;FS=3.564;MQ=58.43;MQRankSum=-6.987e+00;QD=22.94;ReadPosRankSum=0.771;SOR=0.508;VQSLOD=-3.540e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,90:168:99:2208,0,2014
chr3	97983561	rs9289564	G	C	4975.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-01;DB;DP=105;ExcessHet=1.5490;FS=2.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.310;SOR=0.510;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,38:105:99:885,0,1908
chr3	97983711	rs9853887	T	C	4684.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.374e+00;DB;DP=96;ExcessHet=1.5490;FS=2.122;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=2.34;SOR=0.503;VQSLOD=5.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,50:96:99:1272,0,1344
chr3	97983942	rs9853906	A	G	2431.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.920e-01;DB;DP=36;ExcessHet=1.5490;FS=2.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=-1.590e-01;SOR=0.375;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:621,0,471
chr3	98002587	rs16839611	A	G	1476.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e-01;DB;DP=46;ExcessHet=3.9794;FS=1.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-3.960e-01;SOR=0.516;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:588,0,563
chr3	98073591	rs11288615	TA	T	5220.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.069;DB;DP=64;ExcessHet=3.0103;FS=0.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-1.063e+00;SOR=0.619;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1965,192,0
chr3	98109489	rs13069360	C	T	1056.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.252e+00;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=0.565;SOR=0.657;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,37:55:99:1065,0,489
chr3	98216252	rs12639369	A	G	178.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:74,0,67
chr3	98225441	rs1132750	A	C	352.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=0.608;SOR=1.765;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:201,0,129
chr3	98241847	rs6807441	G	C	4956.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.045e+00;DB;DP=169;ExcessHet=3.9794;FS=4.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.37;SOR=0.467;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,92:169:99:2484,0,2208
chr3	98250986	rs2230344	C	T	3155.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421e+00;DB;DP=78;ExcessHet=3.9794;FS=2.325;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-1.310e-01;SOR=0.724;VQSLOD=6.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,51:78:99:1297,0,642
chr3	98252027	rs1529047	G	A	859.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=0.497;SOR=0.404;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:409,0,234
chr3	98299365	rs1051712	T	G	1263.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.804e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=0.719;SOR=2.608;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:330,27,0
chr3	98304467	rs1729995	T	C	4254.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.50;SOR=1.117;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1490,138,0
chr3	98310085	rs35909472	C	T	57.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,95
chr3	98312581	rs4857406	G	C	282.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.97;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr3	98475079	rs893831	G	T	436.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:98475079_G_T:117,0,233:98475079
chr3	98475083	rs893832	A	G	433.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=0.789;SOR=1.371;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:98475079_G_T:117,0,233:98475079
chr3	98487121	rs3217579	TAGTG	T	1202.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.670;SOR=0.667;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,18:24:99:724,0,314
chr3	98489686	rs1440153	A	G	1024.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=33;ExcessHet=3.9794;FS=0.961;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.32;SOR=0.484;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:434,0,472
chr3	98489915	rs1440152	C	G	2618.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.14;SOR=1.700;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2635,237,0
chr3	98491619	rs2334230	G	T	4515.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.14;SOR=1.924;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4532,434,0
chr3	98492491	rs5851138	C	CAT	750.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.86;SOR=5.784;VQSLOD=5.58;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	98501128	rs3772101	A	G	1596.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=1.094;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1613,153,0
chr3	98503776	rs999147	A	G	1845.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=1.057;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1862,186,0
chr3	98503941	rs62278486	G	A	503.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.15;SOR=5.421;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:520,42,0
chr3	98506698	rs2290067	A	G	865.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=3.352;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:882,69,0
chr3	98507513	rs3214776	G	GT	76.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.57;SOR=2.833;VQSLOD=3.31;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr3	98518160	rs62821060	T	TA	6721.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.910e-01;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=0.450;SOR=0.587;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,63:65:99:1708,141,0
chr3	98518806	rs1866679	A	G	137.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.42;SOR=3.258;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr3	98519697	rs11374885	C	CT	106.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:6:98,0,6
chr3	98520602	rs9860216	A	G	408.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=4.804;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:425,30,0
chr3	98531001	rs10612322	ATAAC	A	478.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=4.977;VQSLOD=5.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:495,33,0
chr3	98531342	rs9814819	A	G	2339.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=1.917;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2356,219,0
chr3	98531446	rs278378	T	C	1889.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.68;SOR=7.569;VQSLOD=24.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:432,30,0
chr3	98536571	rs1440150	T	C	1773.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.45;SOR=2.833;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1790,159,0
chr3	98536871	rs62278488	C	T	480.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.16;SOR=3.767;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:497,39,0
chr3	98536990	rs9873932	C	T	110.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=2.833;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr3	98539148	.	G	GT	612.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.070e-01;DP=54;ExcessHet=3.0103;FS=1.116;MQ=60.00;MQRankSum=0.00;QD=11.34;ReadPosRankSum=0.017;SOR=0.433;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,27:54:99:621,0,629
chr3	98540820	rs2922213	A	G	524.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=5.136;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr3	98540931	rs9843214	T	C	831.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=3.442;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:848,72,0
chr3	98541012	rs866873	G	A	9513.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=1.691;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2303,212,0
chr3	98542485	rs10639285	G	GAAGAA	4116.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.93;SOR=3.516;VQSLOD=6.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1170,78,0
chr3	98542536	rs9845558	A	G	583.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=5.549;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:600,45,0
chr3	98544123	.	CA	C	904.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.039;SOR=0.702;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:21:99:161,0,159
chr3	98544353	rs828622	G	A	3291.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=1.697;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1001,102,0
chr3	99536937	rs1718240	C	T	8864.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=148;ExcessHet=3.9794;FS=2.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=-6.220e-01;SOR=0.934;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,75:148:99:2061,0,1781
chr3	99643176	rs793440	C	T	1231.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=57;ExcessHet=3.9794;FS=5.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-2.250e-01;SOR=1.326;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:657,0,812
chr3	99833604	.	T	G	311.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.95;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:320,0,128
chr3	99860401	rs7629487	G	A	1940.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=83;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.03;SOR=0.660;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,40:83:99:1086,0,1083
chr3	99904783	rs12629505	G	A	364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-02;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-7.380e-01;SOR=0.223;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:54:54,0,324
chr3	100015146	rs3772698	G	T	4719.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.373;DB;DP=64;ExcessHet=3.9794;FS=4.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.803;SOR=0.958;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2369,191,0
chr3	100015166	rs3772697	C	T	1735.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=57;ExcessHet=3.9794;FS=0.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=1.33;SOR=0.612;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:681,0,736
chr3	100015249	rs5851199	AT	A	196.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=0.589;SOR=0.387;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:85:114,0,85
chr3	100016726	rs3832199	A	AT	500.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=25;ExcessHet=3.9794;FS=5.640;MQ=60.00;MQRankSum=0.00;QD=7.82;ReadPosRankSum=0.271;SOR=1.457;VQSLOD=4.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,9:25:99:178,0,376
chr3	100017137	rs379945	G	A	258.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=-1.036e+00;SOR=1.609;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr3	100017147	rs35250838	TC	T	197.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=-5.240e-01;SOR=1.402;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr3	100023933	rs2289509	T	A	568.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=1.28;SOR=1.609;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:155,0,23
chr3	100029173	rs4928168	A	G	768.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=0.610;SOR=0.501;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:401,0,342
chr3	100030628	rs3217495	A	AT	1075.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=43;ExcessHet=3.9794;FS=1.895;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.24;ReadPosRankSum=1.10;SOR=1.008;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,22:43:99:514,0,497
chr3	100034849	rs4928169	A	T	1397.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.630e-01;DB;DP=16;ExcessHet=3.9794;FS=8.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=1.09;SOR=3.258;VQSLOD=15.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:613,48,0
chr3	100037795	rs1214369	G	C	378.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.920e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=-1.368e+00;SOR=0.481;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr3	100053684	rs3830303	C	CG	866.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.731;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=0.485;SOR=0.804;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:286,27,0
chr3	100053927	.	G	C	1166.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.060e-01;DP=103;ExcessHet=3.0103;FS=0.736;MQ=59.99;MQRankSum=1.01;QD=11.32;ReadPosRankSum=1.12;SOR=0.815;VQSLOD=0.551;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,51:103:99:1175,0,1288
chr3	100059666	rs35945684	T	C	526.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.24;SOR=5.421;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:255,21,0
chr3	100064741	rs1045206	C	T	553.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=3.0103;FS=1.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=0.816;SOR=0.486;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr3	100064829	rs2289505	C	G	1396.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.19;SOR=3.321;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:655,48,0
chr3	100064902	rs2289506	C	T	2640.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=1.638;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1256,116,0
chr3	100067468	rs277649	C	T	2561.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.945e+00;DB;DP=33;ExcessHet=3.0103;FS=6.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=-2.390e-01;SOR=0.178;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1040,99,0
chr3	100071070	rs13082297	G	C	461.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=59.09;POSITIVE_TRAIN_SITE;QD=33.59;SOR=5.136;VQSLOD=5.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr3	100073826	rs277646	T	G	670.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=8.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=0.140;SOR=2.688;VQSLOD=17.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr3	100084203	rs1561743	C	G	1216.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.31;SOR=4.548;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:549,39,0
chr3	100086861	rs277640	T	C	2641.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.600e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.11;ReadPosRankSum=0.670;SOR=0.664;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:859,75,0
chr3	100092526	rs11384494	A	AG	7539.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.288e+00;DB;DP=54;ExcessHet=3.0103;FS=1.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.59;ReadPosRankSum=-1.556e+00;SOR=0.550;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,54:54:99:1|1:100092526_A_AG:2411,162,0:100092526
chr3	100092528	rs3832198	T	TGCA	7609.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.500e-02;DB;DP=53;ExcessHet=3.0103;FS=1.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=-1.287e+00;SOR=0.531;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,53:53:99:1|1:100092526_A_AG:2411,162,0:100092526
chr3	100094154	rs13071905	G	T	406.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=4.804;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr3	100170600	rs71132521	A	ATCCTAGAAGGCATTCTCATGAGGACCAGGAATTCCGATGCCGATCGTCTGACCGTCT	5041.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.771;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.45;MQRankSum=-1.639e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=-3.217e+00;SOR=0.754;VQSLOD=0.373;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,40:40:99:2312,153,0
chr3	100170825	rs6797397	G	A	1854.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.180e-01;DB;DP=26;ExcessHet=3.0103;FS=1.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=-1.134e+00;SOR=1.187;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:801,78,0
chr3	100174722	rs1132022	G	A	3230.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.320e+00;DB;DP=41;ExcessHet=3.0103;FS=4.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=2.29;SOR=0.877;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1282,122,0
chr3	100354683	rs1520652	G	A	3954.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=37;ExcessHet=3.0103;FS=1.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=1.00;SOR=0.532;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1152,110,0
chr3	100354698	rs1718281	T	A	3515.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.68;SOR=1.397;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:99:873,99,0
chr3	100356027	rs4144968	C	G	1061.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.72;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.49;ReadPosRankSum=-3.420e-01;SOR=2.179;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:246,18,0
chr3	100365756	rs1145347	A	C	603.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=1.739;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr3	100368425	rs7622958	A	G	1479.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.35;SOR=5.784;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:504,36,0
chr3	100368475	rs41272975	G	A	2874.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=3.003;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1325,120,0
chr3	100368692	rs1144118	A	G	6708.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=2.121;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1547,150,0
chr3	100374740	rs9866111	T	C	2661.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.91;ReadPosRankSum=-3.300e-02;SOR=0.859;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,51:52:99:1539,115,0
chr3	100387709	rs1144110	A	G	773.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.08;SOR=5.892;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr3	100388140	rs1145337	A	C	837.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.16;SOR=2.948;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:100388140_A_C:358,24,0:100388140
chr3	100388149	rs1145336	G	T	750.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.91;SOR=2.712;VQSLOD=19.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:100388140_A_C:315,21,0:100388140
chr3	100432751	rs374210483	TA	T	47.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.88;ReadPosRankSum=-1.960e+00;SOR=2.093;VQSLOD=4.06;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:41:0|1:100432751_TA_T:56,0,41:100432751
chr3	100432752	rs9824942	A	*,T	620.67	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.566;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.40;ReadPosRankSum=-6.970e-01;SOR=0.544;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,3,3:6:41:262,61,41,82,0,56
chr3	100432753	.	A	T	49.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.32;ReadPosRankSum=-1.960e+00;SOR=2.093;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:41:0|1:100432751_TA_T:56,0,41:100432751
chr3	100438784	rs1503838	A	G	2092.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=1.95;SOR=0.772;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:444,0,264
chr3	100447416	rs1143775	T	A	58.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=2.303;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
chr3	100451780	rs10936343	T	C	74.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.11;SOR=2.303;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr3	100455609	rs3830581	TG	T	4508.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=63;ExcessHet=3.9794;FS=2.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.337;SOR=0.504;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,32:63:99:1040,0,1041
chr3	100466186	rs3832236	CT	C	1999.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=0.00;QD=16.13;ReadPosRankSum=0.719;SOR=0.777;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,22:41:99:498,0,392
chr3	100467018	rs11353	T	C	6683.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.717e+00;DB;DP=69;ExcessHet=3.0103;FS=0.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.17;ReadPosRankSum=-2.140e-01;SOR=0.813;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2314,207,0
chr3	100473505	rs10936352	C	T	1330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=126;ExcessHet=3.0103;FS=3.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-7.810e-01;SOR=1.023;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,53:126:99:1339,0,1795
chr3	100493607	rs3736534	T	C	378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DB;DP=26;ExcessHet=3.0103;FS=9.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-5.100e-02;SOR=0.028;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:387,0,428
chr3	100511379	rs989794	G	A	184.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262e+00;DB;DP=13;ExcessHet=3.0103;FS=7.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-1.118e+00;SOR=3.477;VQSLOD=14.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:193,0,226
chr3	100511428	rs989793	G	A	303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-01;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.020;SOR=0.693;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:312,0,604
chr3	100511446	rs989795	T	A	482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-7.460e-01;SOR=0.869;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:491,0,640
chr3	100514390	rs1436940	T	C	307.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.99;SOR=4.407;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	100530856	rs764684	T	C	126.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=-5.240e-01;SOR=0.368;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:135,0,63
chr3	100594123	rs41273551	C	G	116.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.06;SOR=1.179;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr3	100594326	rs11278619	CGGCATA	C	8835.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.700e-01;DB;DP=53;ExcessHet=3.0103;FS=3.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.65;ReadPosRankSum=-1.240e-01;SOR=0.712;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2386,160,0
chr3	100595669	rs5851232	CA	C	560.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=0.669;SOR=2.019;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,4:5:4:79,4,0
chr3	100595700	rs1836987	T	C	482.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=3.258;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr3	100604687	rs6786325	T	G	301.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.00;SOR=4.174;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:100604687_T_G:90,6,0:100604687
chr3	100604697	rs6794900	G	C	301.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.95;SOR=4.174;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:100604687_T_G:90,6,0:100604687
chr3	100605206	rs1987384	A	G	4338.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.32;SOR=3.767;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1017,84,0
chr3	100621426	rs2576365	C	A	2951.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=40;ExcessHet=3.0103;FS=0.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=1.17;SOR=0.601;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,39:40:99:1290,110,0
chr3	100645569	rs2576376	C	G	338.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.82;SOR=3.258;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr3	100664662	rs73143072	T	C	352.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=-1.026e+00;SOR=1.112;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:224,15,0
chr3	100945983	rs486352	A	T	696.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.01;SOR=6.439;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:122,12,0
chr3	100946742	rs521661	T	G	3501.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=0.916;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:955,81,0
chr3	100949842	rs348867	G	A	3625.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.09;SOR=1.179;VQSLOD=5.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:929,93,0
chr3	100963154	rs571391	G	A	8215.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=1.000;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2528,233,0
chr3	100976219	rs348885	C	G	707.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=5.784;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr3	100976755	rs7613046	G	C	3574.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=2.882;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:875,66,0
chr3	100992385	rs348866	C	T	2697.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=40;ExcessHet=3.9794;FS=5.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=0.332;SOR=1.329;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:474,0,486
chr3	100994497	rs533852	C	T	3692.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.787e+00;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=0.834;SOR=0.689;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,32:63:99:659,0,736
chr3	101010499	rs538834	G	T	441.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.97;SOR=4.977;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr3	101038297	rs545322	G	A	1230.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.50;SOR=5.421;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:468,36,0
chr3	101038339	rs546090	G	A	1965.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=5.590;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:495,39,0
chr3	101039022	rs10540543	AAGT	A	841.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=4.514;VQSLOD=5.80;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr3	101039107	rs573908	A	C	2338.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=2.165;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:990,84,0
chr3	101046671	rs9849770	C	A	3167.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.650e-01;DB;DP=104;ExcessHet=3.9794;FS=8.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.759;SOR=1.246;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,45:104:99:1073,0,1553
chr3	101051111	rs2062318	C	A	378.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=2.26;SOR=0.892;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:169,0,258
chr3	101051794	rs2068494	C	T	424.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.740e-01;DB;DP=7;ExcessHet=3.9794;FS=2.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-6.520e-01;SOR=1.863;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:113,0,112
chr3	101058775	rs5009801	A	G	66.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:74,0,29
chr3	101060716	rs6441598	T	G	333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=1.37;SOR=0.556;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:215,0,268
chr3	101066717	rs2433031	T	A	4926.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.69;DB;DP=58;ExcessHet=3.9794;FS=6.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.40;ReadPosRankSum=0.693;SOR=1.215;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:706,0,814
chr3	101066964	rs7636229	T	C	1730.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.051e+00;DB;DP=41;ExcessHet=3.9794;FS=1.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.565;SOR=1.058;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:695,0,514
chr3	101066992	rs2553421	A	T	2497.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=5.699;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:377,39,0
chr3	101067010	rs10668782	T	TAGA	892.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=-2.100e-01;SOR=0.954;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:99:276,0,105
chr3	101080694	rs7616677	T	C	1093.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.930;SOR=0.613;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,17:44:99:474,0,761
chr3	101085413	rs939443	G	A	3940.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=138;ExcessHet=3.9794;FS=3.993;MQ=59.90;MQRankSum=0.140;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-1.940e-01;SOR=0.927;VQSLOD=2.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:80,58:138:99:1492,0,2057
chr3	101085683	rs58636547	TAAAAA	T	1504.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=18;ExcessHet=3.9794;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=0.215;SOR=1.802;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:351,0,568
chr3	101136274	rs9822318	C	T	219.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.111e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=0.431;SOR=2.093;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr3	101136340	rs9822356	C	T	300.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=0.700;SOR=0.941;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:140,0,64
chr3	101136385	rs4482646	C	A	831.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.927e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=-4.930e-01;SOR=1.179;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,14:21:99:406,0,197
chr3	101136402	rs9859077	G	C	2311.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.412e+00;DB;DP=31;ExcessHet=3.9794;FS=1.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=0.846;SOR=1.012;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,10:31:99:275,0,683
chr3	101177644	rs12496159	A	C	1064.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=27;ExcessHet=3.9794;FS=3.039;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=1.16;SOR=0.138;VQSLOD=6.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:562,0,303
chr3	101212596	rs9876655	T	C	261.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=0.524;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:118,0,24
chr3	101219818	rs7619540	G	A	475.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.318e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.508;SOR=0.641;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:296,0,339
chr3	101219889	rs7621830	G	C	984.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=-6.690e-01;SOR=0.783;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:483,0,617
chr3	101231871	rs9681493	C	T	1845.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=61;ExcessHet=6.9897;FS=5.490;MQ=60.00;MQRankSum=0.00;QD=10.43;ReadPosRankSum=-2.740e-01;SOR=1.103;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:644,0,902
chr3	101231894	rs9682312	T	G	1838.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=68;ExcessHet=3.9794;FS=3.457;MQ=60.00;MQRankSum=0.00;QD=15.98;ReadPosRankSum=2.91;SOR=1.030;VQSLOD=20.79;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,30:68:99:0|1:101231894_T_G:1092,0,1822:101231894
chr3	101231895	rs9682156	A	T	1838.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390e-01;DB;DP=68;ExcessHet=3.9794;FS=3.457;MQ=60.00;MQRankSum=0.00;QD=15.98;ReadPosRankSum=2.93;SOR=1.030;VQSLOD=20.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,30:68:99:0|1:101231894_T_G:1092,0,1822:101231894
chr3	101231921	rs9682313	T	C	2623.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049e+00;DB;DP=80;ExcessHet=6.9897;FS=3.285;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=0.015;SOR=0.518;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,36:80:99:755,0,1086
chr3	101299031	rs144008875	CAAT	C	3986.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.94;ReadPosRankSum=-7.580e-01;SOR=0.593;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,16:44:99:573,0,1415
chr3	101304414	rs3804776	G	T	2914.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=26;ExcessHet=3.9794;FS=1.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=0.879;SOR=0.524;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:431,0,342
chr3	101308846	rs6441614	G	A	2235.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=8.086;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
chr3	101370529	rs56200814	TA	T	954.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=44;ExcessHet=6.9897;FS=0.000;MQ=59.79;MQRankSum=-8.270e-01;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-1.200e-02;SOR=0.801;VQSLOD=1.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,12:44:99:146,0,466
chr3	101378927	rs2288273	G	A	154.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057e+00;DB;DP=16;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=-4.880e-01;SOR=0.072;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:163,0,366
chr3	101389864	rs9837549	T	C	2578.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=2.211;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:473,45,0
chr3	101399910	rs10712641	GA	G	588.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.505;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.82;ReadPosRankSum=0.041;SOR=0.572;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,9:20:99:190,0,234
chr3	101401521	rs144675201	A	G	620.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.680e-01;DB;DP=61;ExcessHet=3.0103;FS=0.974;MQ=60.00;MQRankSum=0.00;QD=10.17;ReadPosRankSum=-8.170e-01;SOR=0.544;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,26:61:99:629,0,924
chr3	101404813	rs2303473	A	G	2340.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980e-01;DB;DP=52;ExcessHet=6.9897;FS=3.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=0.900;SOR=0.963;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,24:52:99:571,0,734
chr3	101443461	rs994573	T	C	4631.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.06;SOR=2.799;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1565,141,0
chr3	101484335	rs2625282	G	A	8158.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=33.30;SOR=1.128;VQSLOD=5.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2458,234,0
chr3	101504624	rs2625289	A	C	2976.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=3.316;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:701,60,0
chr3	101571550	rs587555	A	G	690.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=0.921;SOR=0.272;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:52:242,0,52
chr3	101572822	rs2925334	C	G	766.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.458e+00;DB;DP=15;ExcessHet=6.9897;FS=7.147;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.051;SOR=0.059;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:203,0,298
chr3	101573345	rs11309019	AT	A	186.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200e-01;DB;DP=42;ExcessHet=6.9897;FS=4.155;MQ=60.00;MQRankSum=0.00;QD=1.60;ReadPosRankSum=-1.011e+00;SOR=0.382;VQSLOD=4.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,10:42:99:119,0,596
chr3	101574503	rs677011	G	A	1007.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=-8.500e-02;SOR=0.608;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:182,0,180
chr3	101575877	.	AT	A	61.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-01;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.19;ReadPosRankSum=1.29;SOR=0.386;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,6:28:70:0|1:101575877_AT_A:70,0,481:101575877
chr3	101575882	rs595788	T	C	2257.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DB;DP=28;ExcessHet=3.9794;FS=1.036;MQ=60.00;MQRankSum=0.00;QD=23.52;ReadPosRankSum=1.46;SOR=0.576;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,14:28:99:1|0:101575877_AT_A:280,0,374:101575877
chr3	101576029	rs3217713	T	TACTTTTAGAAAGCTTTAATAACC	7829.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DB;DP=117;ExcessHet=6.9897;FS=0.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=-2.334e+00;SOR=0.757;VQSLOD=6.44;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:67,50:117:99:2356,0,14316
chr3	101576175	rs14134	T	C	6736.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=177;ExcessHet=6.9897;FS=1.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.050e-01;SOR=0.795;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,69:177:99:1807,0,2981
chr3	101577972	rs11443767	G	GC	69.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.83;SOR=0.693;VQSLOD=4.62;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	102157283	rs11340850	GT	G	1174.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-7.460e-01;SOR=0.744;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,15:39:99:440,0,765
chr3	102157365	rs6784362	A	T	1688.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=66;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=1.02;SOR=0.727;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,25:66:99:633,0,973
chr3	102157417	rs6784389	A	G	1746.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DB;DP=69;ExcessHet=3.9794;FS=2.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-3.600e-02;SOR=0.456;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,29:69:99:633,0,906
chr3	102174936	rs62272486	G	A	679.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.770e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:223,0,104
chr3	102175389	rs74398219	ATATCTATCTATCTATC	A	245.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.27;SOR=3.912;VQSLOD=6.26;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr3	102181131	rs12054046	A	G	1272.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=47;ExcessHet=3.9794;FS=3.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-7.050e-01;SOR=1.095;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:497,0,697
chr3	102182850	rs62272493	T	C	295.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=0.524;SOR=0.818;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:114,0,64
chr3	102195680	rs7627117	C	A	468.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=-4.140e-01;SOR=1.739;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,174
chr3	105238890	rs11291806	CT	C	5680.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=76;ExcessHet=3.9794;FS=5.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.826;SOR=1.080;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,42:76:99:970,0,707
chr3	105238901	rs2291376	T	C	3986.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=82;ExcessHet=6.9897;FS=2.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.577;SOR=0.869;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1012,0,1069
chr3	105252377	rs2171146	G	C	253.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=-6.310e-01;SOR=0.321;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:262,0,457
chr3	105252687	rs2399049	G	A	669.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=-5.520e-01;SOR=1.287;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	105253475	rs6437601	A	C	394.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-4.570e-01;SOR=0.527;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:403,0,405
chr3	105258861	rs1044240	A	G	623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=64;ExcessHet=3.0103;FS=2.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.853;SOR=0.904;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,25:64:99:632,0,871
chr3	105259147	rs11328261	GA	G	284.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.50;SOR=4.804;VQSLOD=5.77;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr3	105260518	rs579565	G	A	2708.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008e+00;DB;DP=72;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.490e-01;SOR=0.688;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,30:72:99:574,0,1106
chr3	105260596	rs599278	T	C	6492.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.83;SOR=1.431;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2008,195,0
chr3	105266536	rs10933821	T	C	116.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=-4.530e-01;SOR=0.120;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:99:125,0,508
chr3	105268649	rs526963	A	C	356.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.744e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=-1.834e+00;SOR=2.147;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	105270850	rs10716366	A	AT	225.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.79;ReadPosRankSum=1.30;SOR=0.776;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:37:37,0,64
chr3	105290528	rs645676	C	G	288.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.68;SOR=4.174;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:44,3,0
chr3	105404031	rs16851440	T	C	1925.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.612;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.27;ReadPosRankSum=1.10;SOR=3.767;VQSLOD=16.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:934,75,0
chr3	105412286	rs10635036	C	CTT	8266.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.45;SOR=1.424;VQSLOD=5.27;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2520,169,0
chr3	105422844	rs2305037	C	T	3226.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=1.146;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1966,194,0
chr3	105423088	rs1548056	T	C	1106.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=6.666;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:314,21,0
chr3	105438806	rs7624400	G	A	4730.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=1.319;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1464,135,0
chr3	105452751	rs1992520	C	T	2365.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.62;SOR=4.582;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:600,45,0
chr3	105453034	rs6768096	A	G	3652.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=2.678;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:943,78,0
chr3	105455955	rs2289746	T	C	3370.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.032;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.93;ReadPosRankSum=1.39;SOR=0.859;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1652,159,0
chr3	105468330	rs1443098	C	T	2249.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.01;SOR=3.912;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:484,39,0
chr3	105495098	rs10546081	CCAAT	C	939.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.190e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.00;ReadPosRankSum=0.00;SOR=4.091;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	105495432	rs9809911	G	T	5376.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=2.151;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1845,175,0
chr3	105586538	rs2221379	G	A	1364.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=7.168;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:374,30,0
chr3	105588069	rs11711088	G	A	4504.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=52;ExcessHet=3.0103;FS=3.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=0.385;SOR=0.439;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1577,156,0
chr3	106967877	rs1283098	G	A	3395.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.200e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=-5.290e-01;SOR=0.617;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:943,87,0
chr3	107096547	rs709564	G	A	1164.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=94;ExcessHet=3.0103;FS=0.788;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.920;SOR=0.565;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,45:94:99:1173,0,1220
chr3	107447857	rs3761963	T	A	1770.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.273;SOR=0.735;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,31:59:99:712,0,613
chr3	107451907	rs4855764	C	T	13000.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=0.932;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4472,452,0
chr3	107463456	rs3838316	TG	T	1555.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.460;DB;DP=66;ExcessHet=3.9794;FS=2.293;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.032;SOR=0.932;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,24:66:99:749,0,1497
chr3	107491758	rs34531902	TAGA	T	766.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.530e-01;DB;DP=35;ExcessHet=3.0103;FS=5.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=-1.951e+00;SOR=0.552;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,20:35:99:775,0,672
chr3	107510403	rs6437744	G	A	410.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.99;SOR=4.804;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr3	107519777	rs11707455	A	G	430.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=0.00;SOR=1.371;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:119,0,64
chr3	107519843	rs1532325	T	C	3057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.42;SOR=8.739;VQSLOD=24.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:902,72,0
chr3	107524112	rs3840144	G	GT	1475.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.710e-01;DB;DP=25;ExcessHet=1.5490;FS=2.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=-6.800e-01;SOR=0.337;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,16:25:99:521,0,262
chr3	107642870	rs36113367	G	A	248.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-9.960e-01;SOR=1.270;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:257,0,176
chr3	107646728	rs4855779	G	A	3489.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228e+00;DB;DP=59;ExcessHet=6.9897;FS=1.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-3.980e-01;SOR=0.547;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,33:59:99:888,0,756
chr3	107646807	rs9837335	G	T	6748.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=128;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-2.380e-01;SOR=0.718;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,65:128:99:1993,0,1738
chr3	107646895	rs9861097	T	C	10296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=278;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-6.960e-01;SOR=0.696;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,136:278:99:3193,0,3333
chr3	107647001	rs35976982	CA	C	9120.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.400e-02;DB;DP=172;ExcessHet=3.9794;FS=1.247;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.584;SOR=0.836;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:79,92:172:99:2084,0,1732
chr3	107776511	rs709436	C	T	1097.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.89;SOR=5.283;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:417,33,0
chr3	107809798	rs445541	C	T	1409.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.37;SOR=1.298;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:502,51,0
chr3	107882643	rs327168	G	A	2797.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=4.062;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:997,90,0
chr3	107884211	rs327167	T	C	1629.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.73;SOR=2.737;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:496,45,0
chr3	107910327	.	CT	C	90.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.730e-01;DP=65;ExcessHet=3.9794;FS=1.562;MQ=59.96;MQRankSum=0.00;QD=0.68;ReadPosRankSum=1.29;SOR=0.841;VQSLOD=4.98;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,9:65:63:63,0,1157
chr3	107925686	rs1289748	G	A	308.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.22;SOR=2.833;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr3	107937165	rs1289762	C	G	331.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=4.407;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr3	107937231	rs1289761	T	C	1411.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=2.833;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:371,36,0
chr3	107937286	rs1289760	A	G	2835.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=1.637;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:628,59,0
chr3	107937544	rs2305447	C	T	277.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;DB;DP=8;ExcessHet=3.9794;FS=1.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.545;SOR=1.162;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:111,0,114
chr3	107937571	rs1289759	G	A	827.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.51;SOR=3.258;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:211,18,0
chr3	107937602	rs1289758	C	T	501.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=5.283;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr3	107938240	rs1289754	G	C	2207.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.47;ReadPosRankSum=0.419;SOR=1.101;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:491,42,0
chr3	107938584	rs1289753	C	T	288.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=4.407;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:304,24,0
chr3	107940636	rs10609787	ATT	A	480.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.49;SOR=4.977;VQSLOD=6.02;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	108070556	rs9846218	T	C	1840.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.12;SOR=3.171;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:636,54,0
chr3	108070992	rs10718672	AT	A	359.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.23;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=0.674;SOR=2.833;VQSLOD=6.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:17:140,17,0
chr3	108072243	rs6766283	C	T	2652.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.816;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1275,117,0
chr3	108072298	rs6779254	T	C	4056.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=1.294;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2053,204,0
chr3	108072704	rs6779650	T	C	768.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=4.003;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:361,30,0
chr3	108081247	rs16854512	G	A	642.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.030e-01;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-7.620e-01;SOR=0.588;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:651,0,737
chr3	108095127	rs9874204	G	C	521.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=5.283;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr3	108096098	rs1463426	C	G	9158.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=75;ExcessHet=3.0103;FS=2.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.94;ReadPosRankSum=1.90;SOR=1.846;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2383,225,0
chr3	108096227	rs1463425	G	C	9504.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=33.35;SOR=1.601;VQSLOD=5.57;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2443,213,0
chr3	108100671	rs78808609	A	T	103.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:112,0,28
chr3	108102585	rs138733417	A	AC	40.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.110e+00;DB;DP=23;ExcessHet=3.0103;FS=2.399;MQ=60.00;MQRankSum=0.00;QD=1.75;ReadPosRankSum=0.386;SOR=0.180;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,6:23:49:49,0,387
chr3	108102586	rs34041576	T	TA,A	2083.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.20;DB;DP=28;ExcessHet=3.0103;FS=6.514;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=-4.020e-01;SOR=0.201;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,6,20:28:90:852,589,578,90,0,152
chr3	108102629	rs56252170	GT	G	125.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.44;ReadPosRankSum=0.935;SOR=0.693;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:134,0,135
chr3	108103427	rs2290600	A	C	660.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.20;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=1.36;SOR=0.495;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:108103427_A_C:540,36,0:108103427
chr3	108103433	rs3860537	T	C	1215.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.59;SOR=4.479;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:108103427_A_C:540,36,0:108103427
chr3	108107704	rs1463431	C	T	3667.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=5.158;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1048,90,0
chr3	108112760	rs2290601	C	T	667.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=5.670;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr3	108117356	rs66851291	T	TG	914.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.56;SOR=3.056;VQSLOD=3.91;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:27:1|1:108117356_T_TG:394,27,0:108117356
chr3	108117359	rs71633456	C	T	914.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.82;SOR=3.160;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:108117356_T_TG:394,27,0:108117356
chr3	108124506	rs79524491	T	A	248.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.103;DB;DP=29;ExcessHet=3.0103;FS=3.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=-1.372e+00;SOR=1.479;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:257,0,456
chr3	108135606	rs56933265	TAA	T	6733.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=3.183;VQSLOD=6.32;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,41:41:99:1|1:108135606_TAA_T:1877,132,0:108135606
chr3	108135609	rs116262927	A	T	6733.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.00;SOR=3.101;VQSLOD=18.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:108135606_TAA_T:1877,132,0:108135606
chr3	108135799	rs11927603	C	G	3999.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651e+00;DB;DP=57;ExcessHet=3.9794;FS=0.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=2.43;SOR=0.606;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:721,0,764
chr3	108140148	rs4593038	A	G	1581.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.22;SOR=4.514;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:217,18,0
chr3	108147295	rs1350235	C	A	2683.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=4.112;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:701,57,0
chr3	108156633	rs113832514	A	AAAAG	2080.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=21;ExcessHet=3.9794;FS=8.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=0.284;SOR=2.245;VQSLOD=5.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:334,0,654
chr3	108158574	rs3996040	C	T	10868.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=144;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=0.146;SOR=0.694;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,59:144:99:1597,0,2120
chr3	108163303	rs3996017	C	T	91.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:97,0,30
chr3	108172817	rs6437783	C	T	5968.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=-5.050e-01;SOR=0.703;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2175,222,0
chr3	108179063	rs3957558	T	C	1041.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=32;ExcessHet=3.9794;FS=2.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=1.34;SOR=0.427;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:412,0,446
chr3	108179219	rs11303627	CA	C	3486.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.454;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=-5.430e-01;SOR=0.678;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,71:76:99:1673,99,0
chr3	108188993	rs9868484	G	A	5766.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DB;DP=101;ExcessHet=3.9794;FS=0.437;MQ=60.00;MQRankSum=0.881;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.117;SOR=0.736;VQSLOD=2.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,43:101:99:975,0,1321
chr3	108189735	rs73850899	T	C	1109.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.366;SOR=0.686;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,15:43:99:358,0,648
chr3	108189750	rs12495639	C	T	4312.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=1.736;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1341,117,0
chr3	108189872	rs140380789	AAAAG	A	232.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.79;ReadPosRankSum=1.15;SOR=0.368;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:58:120,0,58
chr3	108189911	rs138759786	G	GGAGGGAGGAAGA	433.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=4.615;VQSLOD=4.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr3	108189924	rs5017455	A	G	435.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.26;SOR=4.804;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	108211869	rs140450152	A	AAAGG	1806.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=5.892;VQSLOD=7.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr3	108212151	rs369270767	CA	C	263.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040e-01;DB;DP=10;ExcessHet=6.9897;FS=3.067;MQ=60.00;MQRankSum=0.00;QD=11.99;ReadPosRankSum=0.652;SOR=0.148;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:69:128,0,69
chr3	108214537	rs2603140	T	G	1463.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.38;SOR=7.112;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:474,33,0
chr3	108224685	.	CA	C	764.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DP=57;ExcessHet=6.9897;FS=0.545;MQ=59.98;MQRankSum=0.00;QD=3.94;ReadPosRankSum=-7.470e-01;SOR=0.637;VQSLOD=5.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,10:57:99:171,0,798
chr3	108229171	rs2249886	T	C	2146.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.93;SOR=2.998;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:527,42,0
chr3	108229437	rs150536264	G	GA	501.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.230e-01;DB;DP=29;ExcessHet=3.9794;FS=5.759;MQ=60.00;MQRankSum=0.00;QD=10.24;ReadPosRankSum=-1.590e-01;SOR=0.233;VQSLOD=4.90;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,12:29:99:241,0,373
chr3	108271352	rs3816486	A	T	288.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=0.00;SOR=0.976;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:108,0,66
chr3	108272414	rs76336584	T	TA	1558.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353e+00;DB;DP=34;ExcessHet=6.9897;FS=2.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-1.822e+00;SOR=0.449;VQSLOD=6.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,18:34:99:470,0,393
chr3	108272588	rs72470117	T	TA	1191.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-02;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-1.260e-01;SOR=0.614;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,27:43:99:643,0,352
chr3	108272741	.	TATAAAAAAAAAAAAAAAAAA	T	238.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=7;ExcessHet=3.0103;FS=8.451;MQ=60.00;MQRankSum=0.00;QD=34.13;SOR=3.897;VQSLOD=2.05;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:31:0|1:108272741_TATAAAAAAAAAAAAAAAAAA_T:246,0,31:108272741
chr3	108272763	.	A	C	238.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=7;ExcessHet=3.0103;FS=8.451;MQ=60.00;MQRankSum=0.00;QD=34.08;SOR=3.897;VQSLOD=11.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:31:0|1:108272741_TATAAAAAAAAAAAAAAAAAA_T:246,0,31:108272741
chr3	108278471	rs62266396	G	A	449.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=0.732;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:226,0,103
chr3	108295067	rs16854713	G	A	1909.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=55;ExcessHet=6.9897;FS=3.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-7.000e-01;SOR=0.976;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,29:55:99:759,0,573
chr3	108300856	rs73850559	G	A	556.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.014e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.836;SOR=0.604;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:168,0,220
chr3	108324365	rs41267019	C	T	2106.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=28;ExcessHet=6.9897;FS=2.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=-3.300e-01;SOR=1.026;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:496,0,374
chr3	108324394	rs3111478	G	A	1089.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=0.350;SOR=1.112;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:347,0,243
chr3	108327050	rs10684119	T	TAAC	2346.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.370e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.18;ReadPosRankSum=-5.700e-02;SOR=0.611;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1069,72,0
chr3	108329888	rs3112026	A	G	1624.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.68;SOR=7.378;VQSLOD=24.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:553,39,0
chr3	108335253	rs5851599	A	AT	218.62	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=1.28;SOR=3.442;VQSLOD=5.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr3	108344636	rs5851600	TA	T	506.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.780e-01;DB;DP=11;ExcessHet=6.9897;FS=1.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-2.830e-01;SOR=0.406;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:11:20:171,0,20
chr3	108355423	rs10711079	AT	A	3444.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=2.240;VQSLOD=5.43;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:748,72,0
chr3	108355575	rs10711080	CT	C	5948.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.128e+00;DB;DP=47;ExcessHet=3.0103;FS=3.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=0.381;SOR=0.702;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:47:99:1231,140,0
chr3	108356501	rs11276575	T	TTTAAGGTAGTA	1459.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.93;SOR=5.610;VQSLOD=7.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:359,24,0
chr3	108356539	rs3112024	C	G	297.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=0.697;SOR=1.609;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr3	108362961	rs77171800	A	C	143.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.88;ReadPosRankSum=-2.530e-01;SOR=1.329;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:152,0,66
chr3	108369954	rs2969900	T	C	569.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-01;DB;DP=15;ExcessHet=3.9794;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=1.43;SOR=0.382;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:175,0,209
chr3	108373022	rs2969901	G	A	3745.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606e+00;DB;DP=96;ExcessHet=3.9794;FS=3.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-1.760e-01;SOR=0.938;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,47:96:99:1274,0,1396
chr3	108392761	rs62266433	A	G	416.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=-4.310e-01;SOR=2.049;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:371,30,0
chr3	108393134	rs41267025	T	C	1504.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=28;ExcessHet=6.9897;FS=3.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=-1.380e-01;SOR=0.418;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:389,0,425
chr3	108394771	rs12486790	G	A	1643.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DB;DP=41;ExcessHet=6.9897;FS=1.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.406;SOR=0.894;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:360,0,693
chr3	108403086	rs9856097	T	C	5845.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=1.198;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2005,195,0
chr3	108474507	rs1374821	T	C	934.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670e-01;DB;DP=67;ExcessHet=3.0103;FS=3.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.748;SOR=0.346;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,36:67:99:943,0,797
chr3	108475974	rs11708527	G	A	2121.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=-8.320e-01;SOR=0.674;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:368,0,425
chr3	108541761	rs9879812	T	C	1390.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;DB;DP=46;ExcessHet=3.9794;FS=2.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.527;SOR=0.474;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:536,0,547
chr3	108541931	rs5851618	CAT	C	1049.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=0.00;SOR=2.910;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	108541994	rs2121760	C	T	611.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=5.549;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	108549720	rs2290055	T	G	1405.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=0.361;SOR=1.146;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:481,0,299
chr3	108557820	rs7651205	T	C	7079.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.000e-02;DB;DP=115;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=0.955;SOR=0.723;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3373,344,0
chr3	108558090	rs2953350	T	C	431.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.73;SOR=1.802;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr3	108565815	rs2593831	T	C	4782.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=2.023;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1512,147,0
chr3	108567923	rs2715716	G	A	2545.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.202e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=0.957;SOR=1.168;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:415,0,376
chr3	108568324	rs2593835	A	G	1100.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.980e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=1.63;SOR=1.501;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,6:11:99:0|1:108568324_A_G:237,0,342:108568324
chr3	108568326	rs2715717	G	A	1100.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.520e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=1.63;SOR=1.445;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,6:11:99:0|1:108568324_A_G:237,0,342:108568324
chr3	108639119	rs2715688	A	G	574.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.148e+00;DB;DP=18;ExcessHet=3.9794;FS=2.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=0.563;SOR=0.314;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:340,0,230
chr3	108639270	rs6791441	C	T	4639.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=67;ExcessHet=3.9794;FS=5.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.076;SOR=0.732;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,28:67:99:727,0,957
chr3	108639384	rs6804162	T	C	2558.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=28;ExcessHet=3.9794;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=1.74;SOR=0.929;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:232,0,557
chr3	108639423	rs2715687	C	T	3113.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.84;SOR=2.461;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:584,51,0
chr3	108672335	rs11330501	GA	G	121.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.69;ReadPosRankSum=0.366;SOR=0.202;VQSLOD=5.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,2:5:37:37,0,88
chr3	108672336	rs200832629	A	*,G	502.41	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=19.32;SOR=6.593;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,2,3:5:51:167,102,88,51,0,54
chr3	108672787	rs2075766	C	G	464.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=1.10;SOR=0.990;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:45:45,0,360
chr3	108677821	rs2197737	C	A	598.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.49;ReadPosRankSum=-5.360e-01;SOR=0.446;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:95:219,0,95
chr3	108678002	rs2197738	G	A	879.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-3.320e-01;SOR=0.741;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,20:27:99:526,0,146
chr3	108678196	rs3828387	T	A	400.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=7;ExcessHet=3.9794;FS=2.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=1.01;SOR=0.148;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:78:78,0,97
chr3	108682218	rs2715755	A	G	1056.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-8.610e-01;SOR=0.625;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:544,0,596
chr3	108690221	rs2593943	G	A	2027.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.660e-01;DB;DP=77;ExcessHet=3.9794;FS=2.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.063;SOR=0.897;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,29:77:99:615,0,1413
chr3	108698627	rs2953338	G	A	2966.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.95;SOR=3.611;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:873,66,0
chr3	108703391	rs3214774	T	TGG	356.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.742;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.778;SOR=0.307;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:275,0,394
chr3	108703422	rs1868195	A	G	2962.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.48;SOR=5.186;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:839,71,0
chr3	108703518	rs2593958	G	T	1931.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=108;ExcessHet=3.9794;FS=4.121;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=0.436;SOR=0.982;VQSLOD=6.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,40:108:99:962,0,1677
chr3	108703548	rs2593959	C	T	2889.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=128;ExcessHet=3.9794;FS=2.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-9.030e-01;SOR=0.866;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,54:128:99:1356,0,1940
chr3	108703702	rs2593960	A	T	1936.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.203e+00;DB;DP=63;ExcessHet=3.9794;FS=1.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.257;SOR=0.912;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,27:63:99:717,0,1036
chr3	108705702	rs116701466	T	C	2483.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.280e-01;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=0.093;SOR=0.690;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,16:28:99:0|1:108705702_T_C:424,0,369:108705702
chr3	108705715	rs11433147	A	AT	5251.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.49;ReadPosRankSum=1.64;SOR=1.379;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:108705702_T_C:1341,114,0:108705702
chr3	108724202	rs13072610	A	G	534.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.390e-01;DB;DP=48;ExcessHet=3.0103;FS=1.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-9.300e-02;SOR=0.495;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:543,0,718
chr3	108724279	rs2290058	T	A	432.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=1.55;SOR=0.518;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:241,0,273
chr3	108725694	rs2044586	C	T	1346.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.24;SOR=5.728;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:169,15,0
chr3	108725759	rs2044587	C	T	705.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=22;ExcessHet=3.9794;FS=2.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.773;SOR=0.391;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:220,0,397
chr3	108725848	rs374181353	ATTGC	A	2446.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.577;DB;DP=73;ExcessHet=3.9794;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=1.19;SOR=0.794;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,32:73:99:0|1:108725848_ATTGC_A:1219,0,3693:108725848
chr3	108725862	rs2044589	T	C	2571.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=81;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=1.94;SOR=0.720;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,37:81:99:0|1:108725848_ATTGC_A:1327,0,3738:108725848
chr3	108725984	rs2044590	G	C	1552.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;DB;DP=74;ExcessHet=3.9794;FS=1.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-2.600e-01;SOR=0.567;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,34:74:99:872,0,1024
chr3	108751867	rs34222099	GTTA	G	194.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.39;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	108754059	rs4855575	C	T	2984.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.56;SOR=5.670;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:720,51,0
chr3	108754146	rs9821261	G	A	1627.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.852e+00;DB;DP=62;ExcessHet=3.9794;FS=3.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=0.711;SOR=0.438;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,31:62:99:719,0,893
chr3	108754214	rs3762697	T	C	1121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.127e+00;DB;DP=104;ExcessHet=3.0103;FS=2.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=-1.616e+00;SOR=0.737;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1130,0,1262
chr3	108754238	rs4855576	A	T	9497.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.64;SOR=0.952;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3098,309,0
chr3	108754260	rs3762696	A	G	1874.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.880e-01;DB;DP=90;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.543;SOR=0.706;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,38:90:99:820,0,1246
chr3	108754320	rs11438791	T	TA,TAA	3648.05	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.066;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=-2.480e-01;SOR=1.209;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,19,19:40:99:1082,445,386,422,0,429
chr3	108754346	rs35736028	CA	C	1288.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-02;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.41;ReadPosRankSum=0.950;SOR=0.636;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:266,0,201
chr3	108754374	rs3762695	T	C	214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=1.19;SOR=0.569;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:223,0,256
chr3	108776343	rs1031252	C	T	4365.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=2.815;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1486,138,0
chr3	108781747	rs13098469	G	A	137.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=-1.006e+00;SOR=0.941;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:146,0,112
chr3	108781952	rs13060344	G	T	1482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.128e+00;DB;DP=111;ExcessHet=3.0103;FS=3.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-2.860e-01;SOR=1.044;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,57:111:99:1491,0,1403
chr3	108782160	rs895738	T	C	1789.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615e+00;DB;DP=24;ExcessHet=3.9794;FS=2.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=1.34;SOR=1.673;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:235,0,480
chr3	108788701	rs35996834	C	CT	627.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.249e+00;DB;DP=37;ExcessHet=3.0103;FS=5.412;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-9.000e-01;SOR=0.197;VQSLOD=6.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,20:37:99:636,0,526
chr3	108812100	rs62274699	C	T	1012.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=1.28;SOR=2.376;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:157,0,27
chr3	108829362	rs7641406	A	C	358.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:64,0,32
chr3	108829765	rs6437822	C	T	695.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.13;ReadPosRankSum=0.00;SOR=3.816;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:51:179,0,51
chr3	108855774	rs1356071	A	G	5580.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=1.360;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1323,117,0
chr3	108855801	rs1356072	T	A	3518.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.480e-01;DB;DP=28;ExcessHet=3.0103;FS=2.234;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.32;ReadPosRankSum=1.79;SOR=0.471;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:275,0,428
chr3	108855917	rs36222136	CTGTGTG	C	584.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;SOR=4.047;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:21:123,0,21
chr3	108867128	rs4855697	A	G	390.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=48;ExcessHet=3.0103;FS=6.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.13;ReadPosRankSum=1.18;SOR=1.404;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,15:48:99:399,0,784
chr3	108867303	.	C	G	282.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.16;ReadPosRankSum=-1.410e-01;SOR=1.179;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:87:291,0,87
chr3	108897116	rs11552473	G	A	1449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e-01;DB;DP=75;ExcessHet=3.0103;FS=0.870;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-8.960e-01;SOR=0.555;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,37:75:99:0|1:108897116_G_A:1458,0,2123:108897116
chr3	108897123	rs62621254	G	T	1363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=74;ExcessHet=3.0103;FS=0.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=-1.017e+00;SOR=0.512;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,36:74:99:0|1:108897116_G_A:1372,0,2151:108897116
chr3	108897541	rs9288889	G	T	2083.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466e+00;DB;DP=20;ExcessHet=3.0103;FS=3.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.55;ReadPosRankSum=-3.040e-01;SOR=0.301;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:342,0,280
chr3	108897616	rs9288890	G	C	1033.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.46;ReadPosRankSum=0.732;SOR=1.236;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:93:217,0,93
chr3	108897649	rs72043146	AAAG	A	557.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.12;SOR=5.283;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	109019435	rs9865540	G	A	2784.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=4.528;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:813,66,0
chr3	109027157	rs7611135	C	T	11505.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.61;ReadPosRankSum=-2.100e-01;SOR=1.408;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3209,306,0
chr3	109027820	rs7611871	G	A	2596.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.744e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=0.667;SOR=2.862;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:809,63,0
chr3	109047191	rs3804621	G	A	859.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.436;DB;DP=12;ExcessHet=1.5490;FS=2.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=-1.787e+00;SOR=1.609;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:424,36,0
chr3	109049104	rs2699988	G	A	210.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=27.06;SOR=3.611;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:109049104_G_A:225,15,0:109049104
chr3	109049105	rs2699989	C	T	210.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=3.611;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:109049104_G_A:225,15,0:109049104
chr3	109049147	.	CAAAAAAAAAAAAAAAAAA	C	1774.68	PASS	AC=2;AF=1.00;AN=2;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.82;SOR=4.021;VQSLOD=5.01;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:45:1|1:109049147_CAAAAAAAAAAAAAAAAAA_C:651,45,0:109049147
chr3	109049180	rs5851663	GA	G	1162.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.280e+00;DB;DP=22;ExcessHet=1.5490;FS=2.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=1.65;SOR=0.245;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:109049147_CAAAAAAAAAAAAAAAAAA_C:848,66,0:109049147
chr3	109049720	rs112463757	C	CTAAGGGT	1673.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.300e-01;DB;DP=32;ExcessHet=1.5490;FS=3.340;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=-5.900e-01;SOR=1.151;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1439,96,0
chr3	109050980	rs1163438	T	C	1291.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.871e+00;DB;DP=26;ExcessHet=1.5490;FS=5.360;MQ=59.71;MQRankSum=-1.003e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=-3.860e-01;SOR=2.208;VQSLOD=6.500e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:78:925,78,0
chr3	109052732	rs3762648	T	C	3517.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.841;DB;DP=77;ExcessHet=1.5490;FS=2.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=-9.790e-01;SOR=0.485;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2557,231,0
chr3	109052934	rs7642495	G	A	2070.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.490e-01;DB;DP=49;ExcessHet=1.5490;FS=1.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=-9.580e-01;SOR=0.904;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1543,145,0
chr3	109053031	rs2625594	A	T	1098.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.34;SOR=6.666;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:408,30,0
chr3	109056183	rs9836011	A	T	1244.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.026e+00;DB;DP=28;ExcessHet=1.5490;FS=5.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=1.21;SOR=0.150;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:956,84,0
chr3	109128692	rs808802	C	T	867.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.405;DB;DP=18;ExcessHet=1.5490;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=0.077;SOR=0.437;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:599,54,0
chr3	109136885	rs6802687	A	T	1263.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.722e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.41;ReadPosRankSum=-5.250e-01;SOR=3.556;VQSLOD=17.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:399,33,0
chr3	109178707	rs769534	C	G	3977.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.544;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=-4.070e-01;SOR=0.702;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1397,129,0
chr3	109178758	rs769533	C	T	4085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.646;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:920,90,0
chr3	109213239	rs709428	G	A	354.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.524;SOR=0.540;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,106
chr3	109321666	rs57113096	TG	T	60.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-1.383e+00;SOR=0.105;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,69
chr3	110611137	rs1381838	G	A	8965.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.96;SOR=0.992;VQSLOD=5.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2828,261,0
chr3	110791113	rs4682228	A	G	5023.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.16;SOR=2.229;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1982,153,0
chr3	110792906	rs2399372	G	A	5115.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=4.174;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1809,153,0
chr3	110793050	rs2399373	G	A	9394.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=0.753;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4344,431,0
chr3	110830746	rs71845799	ATGTGTG	A	2040.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=2.507;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:13:39:566,39,0
chr3	110866437	rs62273799	G	A	1835.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=5.464;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:373,30,0
chr3	110993694	rs4682036	T	C	361.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.41;SOR=4.615;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr3	111260975	rs2276873	C	T	1012.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.014;DB;DP=68;ExcessHet=3.0103;FS=4.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-3.660e-01;SOR=1.451;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,39:68:99:1021,0,695
chr3	111261242	rs3832264	G	GCTGCTGAAATTGATCACCA	136.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.179;SOR=1.981;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:145,0,1162
chr3	111263826	rs1513325	G	A	168.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=13;ExcessHet=3.0103;FS=3.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=1.37;SOR=2.030;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:177,0,233
chr3	111304219	rs140235134	G	A	606.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.680e-01;DB;DP=65;ExcessHet=3.0103;FS=2.113;MQ=60.00;MQRankSum=0.00;QD=9.33;ReadPosRankSum=-7.690e-01;SOR=1.109;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:615,0,927
chr3	111316886	rs10690711	C	CTTATG	2020.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-01;DB;DP=41;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.536;SOR=0.723;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,13:41:99:503,0,1893
chr3	111356083	rs1533270	G	C	7300.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.29;SOR=1.281;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2539,261,0
chr3	111356711	rs73230143	C	A	99.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:107,0,63
chr3	111366310	.	C	A	1313.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DP=103;ExcessHet=3.0103;FS=4.040;MQ=60.00;MQRankSum=0.00;QD=12.75;ReadPosRankSum=-1.624e+00;SOR=0.354;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,50:103:99:1322,0,1420
chr3	111368813	rs3733176	C	T	632.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.119e+00;DB;DP=20;ExcessHet=3.9794;FS=6.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-4.580e-01;SOR=0.080;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:284,0,413
chr3	111439954	rs7653881	C	T	873.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.86;SOR=4.003;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:330,27,0
chr3	111451603	rs3821919	G	C	1434.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=-7.400e-01;SOR=0.823;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:679,0,427
chr3	111451771	rs12632310	C	T	151.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.56;SOR=3.258;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
chr3	111564985	rs937558	T	A	505.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.30;SOR=5.283;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr3	111602770	rs6805339	G	A	68.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.32;SOR=2.303;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	111602828	rs6805359	G	A	105.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.29;SOR=2.833;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	111604541	rs1283007	G	C	4365.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.84;SOR=3.576;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1135,101,0
chr3	111637691	rs6786539	T	C	718.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=7;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=1.90;SOR=4.294;VQSLOD=13.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:111637691_T_C:315,21,0:111637691
chr3	111637692	rs6773761	G	C	718.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=7.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.22;ReadPosRankSum=1.90;SOR=4.407;VQSLOD=12.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:111637691_T_C:315,21,0:111637691
chr3	111637816	rs16858868	A	G	1206.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641e+00;DB;DP=28;ExcessHet=1.5490;FS=7.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=-1.540e-01;SOR=0.158;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,27:28:42:889,42,0
chr3	111637904	rs2399399	G	A	4354.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=0.747;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1433,155,0
chr3	111638132	rs951660	A	C	912.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=6.184;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr3	111638952	rs6779756	C	T	1866.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=6.316;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:622,51,0
chr3	111639353	rs937551	G	T	1293.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=7.112;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:391,30,0
chr3	111658290	rs712509	T	G	2266.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.94;SOR=2.531;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:476,39,0
chr3	111658486	rs712510	T	G	5880.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.99;SOR=1.212;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1956,176,0
chr3	111659377	rs698358	T	C	7263.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.72;SOR=1.164;VQSLOD=3.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2059,200,0
chr3	111663928	rs6786655	A	C	226.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.36;ReadPosRankSum=-1.282e+00;SOR=2.584;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	111671284	rs712517	A	G	1339.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=6.932;VQSLOD=23.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:473,33,0
chr3	111673147	rs3749299	C	T	149.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=3.258;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr3	111677526	rs11713044	G	A	4558.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.948;DB;DP=108;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-1.240e-01;SOR=0.693;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,106:108:99:3161,273,0
chr3	111681335	rs698360	T	C	638.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.09;SOR=5.549;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr3	111685328	rs774859	T	C	1291.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=5.353;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:111685328_T_C:405,27,0:111685328
chr3	111685348	rs774858	A	G	1039.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.35;SOR=5.031;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:111685328_T_C:477,33,0:111685328
chr3	111685374	rs146131500	GGT	G	656.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.334;DB;DP=11;ExcessHet=1.5490;FS=2.556;MQ=60.00;MQRankSum=0.00;QD=25.27;ReadPosRankSum=0.982;SOR=0.307;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:388,33,0
chr3	111686738	rs799570	G	A	729.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.645e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.54;ReadPosRankSum=1.59;SOR=0.818;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:178,18,0
chr3	111692829	rs774852	C	T	1737.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.68;SOR=6.184;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:303,24,0
chr3	111705368	rs1709223	T	C	2345.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.13;SOR=8.287;VQSLOD=24.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:111705368_T_C:722,57,0:111705368
chr3	111705992	rs3804765	A	G	272.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=2.833;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:289,24,0
chr3	111730487	rs3749309	T	C	446.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.89;ReadPosRankSum=1.38;SOR=2.985;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr3	111730546	rs3749310	G	A	967.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.29;SOR=5.136;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:611,48,0
chr3	111730591	rs3749311	G	T	2482.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.334e+00;DB;DP=34;ExcessHet=3.0103;FS=2.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=0.603;SOR=1.305;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1079,102,0
chr3	111730766	rs3828394	G	A	2033.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=0.880;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2050,202,0
chr3	111732608	rs8070	G	A	417.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=2.147;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:434,39,0
chr3	111757212	rs7625876	A	G	834.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.500;SOR=0.739;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:267,0,437
chr3	111757350	rs62280174	C	T	60.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=1.65;SOR=0.368;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,78
chr3	111760771	rs774774	A	G	6452.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=60;ExcessHet=3.0103;FS=1.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=-1.813e+00;SOR=0.864;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:767,0,659
chr3	111763085	rs4682350	C	T	4214.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776e+00;DB;DP=49;ExcessHet=3.0103;FS=5.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=-5.810e-01;SOR=1.478;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,23:49:99:578,0,742
chr3	111763278	rs7650559	G	T	4772.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=-3.210e-01;SOR=0.723;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:594,0,552
chr3	111765834	rs1561911	G	A	5733.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;DB;DP=80;ExcessHet=3.0103;FS=2.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=-2.760e-01;SOR=0.480;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,36:80:99:896,0,1042
chr3	111766215	rs1318554	A	G	5051.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=63;ExcessHet=3.0103;FS=9.305;MQ=59.98;MQRankSum=1.23;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=-4.470e-01;SOR=1.598;VQSLOD=-1.948e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,37:63:99:888,0,617
chr3	111766559	rs1688304	T	G	3499.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e-01;DB;DP=34;ExcessHet=3.0103;FS=1.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=-2.490e-01;SOR=0.389;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,28:34:99:799,0,109
chr3	111769417	rs7625159	G	A	441.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=17;ExcessHet=3.9794;FS=1.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.453;SOR=1.085;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:165,0,298
chr3	111776135	rs55971748	T	A	481.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=25;ExcessHet=3.0103;FS=11.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-1.100e-01;SOR=3.816;VQSLOD=12.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:490,0,377
chr3	111776188	rs56039551	T	G	123.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-5.680e-01;SOR=0.269;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:132,0,289
chr3	111785208	rs11715561	G	A	2368.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=54;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=-9.300e-02;SOR=0.741;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1621,162,0
chr3	111793316	rs191454	G	T	2590.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=2.124;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1065,96,0
chr3	111794365	rs1907639	A	G	2385.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=2.173;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:893,84,0
chr3	111797917	rs1075618	G	A	945.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.82;SOR=6.439;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
chr3	111799845	rs340151	A	T	7696.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=0.954;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2483,254,0
chr3	111805438	rs3833596	G	GT	8582.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=0.4576;FS=0.000;MQ=59.98;QD=33.94;SOR=1.704;VQSLOD=4.50;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3816,310,0
chr3	111822017	rs41270437	A	G	70.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.96;SOR=2.303;VQSLOD=19.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	111828423	rs340167	G	A	9415.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=1.199;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2601,243,0
chr3	111838203	rs35833422	CAA	C	1213.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.544e+00;DB;DP=14;ExcessHet=1.5490;FS=4.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=0.242;SOR=0.240;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:630,42,0
chr3	111843883	rs923745	T	C	1944.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=2.644;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:62:627,62,0
chr3	111849123	rs5851820	CA	C	300.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.35;SOR=4.615;VQSLOD=6.75;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:24:317,24,0
chr3	111849167	rs4276157	T	C	1193.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.19;SOR=6.804;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:480,36,0
chr3	111851817	rs950528	C	T	1863.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.46;DB;DP=36;ExcessHet=1.5490;FS=3.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=0.906;SOR=0.330;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1250,108,0
chr3	111851890	rs879652	A	G	3787.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;DB;DP=93;ExcessHet=1.5490;FS=1.493;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=-5.630e-01;SOR=0.532;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2880,279,0
chr3	111854070	rs59632909	CTGTT	C	253.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.91;SOR=3.912;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	111860222	rs1492480	A	G	671.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.470e-01;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.54;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:504,39,0
chr3	111869973	rs59475925	G	A	381.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.126;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=-3.850e-01;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
chr3	111870228	rs6781137	C	T	5174.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.460e-01;DB;DP=103;ExcessHet=1.5490;FS=1.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=0.375;SOR=0.727;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3103,308,0
chr3	111870878	rs147236614	A	G	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=18;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;QD=19.68;ReadPosRankSum=2.27;SOR=2.147;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:363,0,229
chr3	111873902	rs11369523	T	TA	1899.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.910e-01;DB;DP=39;ExcessHet=3.0103;FS=1.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.203;SOR=0.953;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,31:39:28:727,28,0
chr3	111885896	rs4682084	A	G	1246.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.25;SOR=6.804;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0
chr3	111886357	rs4682363	A	G	392.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=4.804;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	111904539	rs2399407	C	T	2556.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.072;DB;DP=51;ExcessHet=1.5490;FS=2.586;MQ=47.93;MQRankSum=0.264;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=-2.220e+00;SOR=0.875;VQSLOD=-2.675e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1593,152,0
chr3	111918216	rs13098660	A	G	6018.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.07;SOR=0.693;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2365,243,0
chr3	111919761	rs6438037	C	T	635.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.38;SOR=5.670;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr3	111921225	rs6781844	G	T	2697.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.51;SOR=1.395;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1167,99,0
chr3	111923047	rs4422273	G	A	1040.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.24;SOR=5.136;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:529,39,0
chr3	111923123	rs4434123	G	A	3299.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.74;SOR=2.135;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1624,141,0
chr3	111926812	rs4373039	C	T	355.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=4.615;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
chr3	111936118	rs11921877	A	G	687.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=4.294;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:350,24,0
chr3	111936200	rs1388857	C	A	2721.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.63;SOR=2.864;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1250,105,0
chr3	111936491	rs9288939	A	G	716.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.46;SOR=5.994;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:247,21,0
chr3	111950021	rs71134811	T	TTTTC	284.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.31;SOR=1.329;VQSLOD=4.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:6:78,6,0
chr3	111958679	rs13065023	T	C	1798.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.229e+00;DB;DP=32;ExcessHet=1.5490;FS=6.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=-1.154e+00;SOR=0.166;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1064,96,0
chr3	111958862	rs13089635	C	A	2595.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.468e+00;DB;DP=60;ExcessHet=1.5490;FS=5.036;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=1.34;SOR=0.363;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1747,178,0
chr3	111962540	.	CTT	C	440.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.39;SOR=4.047;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:211,18,0
chr3	111962774	rs13089316	T	C	3170.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.680e-01;DB;DP=67;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=-1.810e-01;SOR=0.691;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2000,201,0
chr3	111981696	rs5851826	CA	C	470.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=4.977;VQSLOD=7.06;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:111981696_CA_C:225,15,0:111981696
chr3	111981704	rs5003791	C	T	628.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.73;SOR=5.549;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:111981696_CA_C:225,15,0:111981696
chr3	111981849	rs9860819	C	T	5935.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.39;SOR=1.112;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2861,296,0
chr3	111981878	rs9809384	T	C	5948.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=0.817;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2954,308,0
chr3	111981924	rs9809404	T	C	5175.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=32.76;SOR=1.290;VQSLOD=4.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2422,227,0
chr3	111982127	rs11918129	A	G	144.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.84;ReadPosRankSum=-9.670e-01;SOR=1.329;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr3	111983197	rs6788397	C	T	713.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=1.051;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:318,33,0
chr3	111984970	rs4682098	T	C	1142.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=5.283;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr3	111985048	rs4682099	G	A	1004.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.990e-01;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=0.487;SOR=0.784;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:576,57,0
chr3	111985428	rs4264699	G	A	2519.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=2.103;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:803,81,0
chr3	111985452	rs4571212	C	T	2168.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.43;SOR=2.139;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:844,84,0
chr3	111988992	rs13069541	T	G	1269.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.26;DB;DP=22;ExcessHet=1.5490;FS=11.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=0.144;SOR=3.033;VQSLOD=12.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:859,66,0
chr3	111993716	rs6805112	G	A	653.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=3.716;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:29:303,29,0
chr3	111993915	rs4682100	A	G	1335.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.770e-01;DB;DP=27;ExcessHet=1.5490;FS=1.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=2.09;SOR=0.981;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:81:1|1:111993913_A_G:951,81,0:111993913
chr3	111999736	rs147052896	A	ACTTGTTTTCT	1525.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.68;SOR=2.649;VQSLOD=5.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:45:655,45,0
chr3	112005346	rs7631673	A	G	284.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=2.584;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	112005423	rs7621431	T	C	989.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.83;SOR=3.690;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:436,39,0
chr3	112051693	rs13073116	G	T	71.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.319;SOR=0.446;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:77,0,32
chr3	112051758	rs71134825	G	GA	80.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.41;ReadPosRankSum=-9.670e-01;SOR=0.368;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:19:45,0,19
chr3	112052103	rs2276772	G	T	2518.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DB;DP=94;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=2.77;SOR=0.664;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,53:94:99:1420,0,1025
chr3	112052173	rs9883527	T	C	7967.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.95;SOR=1.140;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2797,281,0
chr3	112063850	rs2272022	C	A	1372.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=42;ExcessHet=3.9794;FS=0.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=1.25;SOR=0.551;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:547,0,468
chr3	112184927	rs2171513	A	G	5483.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.930e-01;DB;DP=73;ExcessHet=3.0103;FS=2.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=-7.040e-01;SOR=0.452;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2551,219,0
chr3	112185025	rs9288952	G	A	8734.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=117;ExcessHet=3.0103;FS=1.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=0.973;SOR=0.600;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3811,351,0
chr3	112190137	rs2931761	G	T	13067.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=1.029;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4180,416,0
chr3	112251775	rs9855848	C	T	831.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.65;ReadPosRankSum=-6.000e-02;SOR=4.091;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr3	112253058	rs35560667	C	CA	3113.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.33;ReadPosRankSum=0.315;SOR=0.631;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,36:43:63:882,0,63
chr3	112253193	rs59973980	C	CA	3060.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-5.760e-01;SOR=0.744;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,33:45:99:631,0,142
chr3	112267269	rs7625366	T	C	1795.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.963e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.51;ReadPosRankSum=1.83;SOR=2.340;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:594,45,0
chr3	112267523	rs9809247	G	A	6817.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.520e-01;DB;DP=79;ExcessHet=3.0103;FS=6.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=0.506;SOR=0.341;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2642,236,0
chr3	112269287	rs2705520	A	G	1544.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=5.892;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:597,42,0
chr3	112280218	rs2279532	G	A	2430.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.10;DB;DP=33;ExcessHet=3.0103;FS=5.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=1.58;SOR=0.302;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,32:33:61:1001,61,0
chr3	112289320	rs9869455	G	A	3838.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.031e+00;DB;DP=44;ExcessHet=3.0103;FS=2.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=0.910;SOR=0.473;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1503,132,0
chr3	112289372	rs9869579	G	A	6313.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.971;DB;DP=80;ExcessHet=3.0103;FS=1.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=-1.452e+00;SOR=0.565;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2569,238,0
chr3	112301458	rs5851844	C	CCTTAGTAAT	6709.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.87;SOR=1.806;VQSLOD=5.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2330,156,0
chr3	112338027	rs13084615	T	C	4346.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.852;DB;DP=45;ExcessHet=3.0103;FS=3.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-1.123e+00;SOR=0.338;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1613,135,0
chr3	112356770	rs2279531	T	C	1325.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.15;ReadPosRankSum=-1.120e-01;SOR=2.670;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:252,0,271
chr3	112415652	rs10934180	G	C	1496.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=3.912;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:460,33,0
chr3	112538571	rs35585943	CT	C	1095.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=0.623;SOR=1.225;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,15:21:99:367,0,108
chr3	112546306	rs4682119	C	A	6627.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=164;ExcessHet=1.5490;FS=3.469;MQ=59.99;MQRankSum=0.942;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=-1.390e-01;SOR=0.907;VQSLOD=2.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:88,76:164:99:1879,0,2104
chr3	112546473	rs1997281	G	A	2292.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=80;ExcessHet=3.9794;FS=17.667;MQ=59.07;MQRankSum=1.05;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=2.81;SOR=1.253;VQSLOD=-7.531e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,40:80:99:1123,0,962
chr3	112556904	rs6795521	C	G	1602.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.070e+00;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.85;ReadPosRankSum=-1.445e+00;SOR=0.602;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:494,0,386
chr3	112556946	rs6770923	A	G	985.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622e+00;DB;DP=18;ExcessHet=1.5490;FS=5.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=-1.468e+00;SOR=0.144;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:175,0,351
chr3	112564801	rs6766388	T	A	544.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=-5.420e-01;SOR=1.508;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr3	112642568	rs9865242	C	G	3702.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.963e+00;DB;DP=67;ExcessHet=1.5490;FS=0.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=-2.710e-01;SOR=0.829;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,67:67:99:1|1:112642568_C_G:2502,201,0:112642568
chr3	112642572	rs79556290	T	C	730.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840e-01;DB;DP=66;ExcessHet=3.0103;FS=8.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.063e+00;SOR=1.233;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,30:66:99:0|1:112642568_C_G:739,0,907:112642568
chr3	112643053	rs112804574	C	G	221.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-6.190e-01;SOR=1.863;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:55:230,0,55
chr3	112643193	rs77561169	T	C	569.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.820;DB;DP=37;ExcessHet=3.0103;FS=5.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=-2.471e+00;SOR=0.223;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:578,0,395
chr3	112643403	rs72491120	G	T	241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.776;SOR=1.022;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:250,0,200
chr3	112643560	rs9870568	C	A	69.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=0.693;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	112643852	rs113423961	C	T	393.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=23;ExcessHet=3.0103;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=1.39;SOR=1.445;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:402,0,321
chr3	112643952	rs72491121	C	T	969.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=72;ExcessHet=3.0103;FS=1.961;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=1.71;SOR=0.467;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,41:72:99:978,0,719
chr3	112647512	rs2141347	C	A	89.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:57:98,0,57
chr3	112647550	rs145864066	A	G	95.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.00;SOR=0.495;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:104,0,143
chr3	112647613	rs1466872	T	C	875.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.572e+00;DB;DP=21;ExcessHet=1.5490;FS=1.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=-5.670e-01;SOR=0.392;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:650,63,0
chr3	112647832	rs9826308	A	C	4424.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.91;DB;DP=94;ExcessHet=1.5490;FS=4.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.841;SOR=1.001;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3004,281,0
chr3	112647988	rs9868053	C	T	6473.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.45;DB;DP=115;ExcessHet=1.5490;FS=2.541;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=-1.426e+00;SOR=0.915;VQSLOD=6.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:4089,345,0
chr3	112648125	rs6438117	G	T	14137.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.186;DB;DP=192;ExcessHet=1.5490;FS=0.565;MQ=59.91;MQRankSum=-2.296e+00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=-4.830e-01;SOR=0.631;VQSLOD=1.27;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,192:192:99:1|1:112648125_G_T:8656,587,0:112648125
chr3	112648127	rs4596117	T	G	14137.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.92;DB;DP=194;ExcessHet=1.5490;FS=0.000;MQ=59.89;MQRankSum=-2.494e+00;POSITIVE_TRAIN_SITE;QD=29.39;ReadPosRankSum=-8.520e-01;SOR=0.670;VQSLOD=1.45;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,194:194:99:1|1:112648125_G_T:8656,587,0:112648125
chr3	112648222	rs2171509	T	C	6265.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.08;DB;DP=112;ExcessHet=1.5490;FS=1.786;MQ=58.91;MQRankSum=-7.350e-01;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=-3.650e-01;SOR=0.869;VQSLOD=1.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3824,336,0
chr3	112650217	rs34122629	ATACT	A	197.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	112666542	rs1392786	T	C	249.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=-1.383e+00;SOR=2.093;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr3	112666859	rs2133946	C	T	902.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=1.40;SOR=0.657;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:911,0,726
chr3	112693773	rs115467780	G	A	285.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.844;SOR=0.527;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:294,0,336
chr3	112709828	rs2272393	C	G	2330.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.911e+00;DB;DP=50;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-3.360e-01;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:694,0,747
chr3	112710242	rs2248029	T	C	7833.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.079e+00;DB;DP=230;ExcessHet=3.9794;FS=0.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-3.950e-01;SOR=0.618;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,115:230:99:3091,0,3138
chr3	112719791	.	CA	C	726.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DP=29;ExcessHet=3.9794;FS=2.748;MQ=59.98;MQRankSum=0.00;QD=7.81;ReadPosRankSum=-2.420e-01;SOR=0.997;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,6:29:47:47,0,455
chr3	112727184	rs2306857	A	T	3747.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.880e-01;DB;DP=84;ExcessHet=6.9897;FS=2.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=1.65;SOR=0.829;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,36:84:99:867,0,1258
chr3	112729768	rs2293562	A	T	726.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=6.9897;FS=8.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=0.773;SOR=2.174;VQSLOD=19.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:169,0,104
chr3	112730343	rs150648691	A	G	119.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-3.890e-01;SOR=0.941;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:128,0,218
chr3	112731845	rs2276769	A	G	267.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=2.584;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	112732309	.	GT	G	506.70	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.77;SOR=2.910;VQSLOD=3.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:157,18,0
chr3	112736411	rs140939168	C	T	1297.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e-01;DB;DP=97;ExcessHet=3.0103;FS=5.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=1.40;SOR=0.348;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,52:97:99:1306,0,1172
chr3	112738318	rs2293560	C	T	7451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=159;ExcessHet=6.9897;FS=3.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-2.600e-01;SOR=1.004;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,82:159:99:2138,0,2076
chr3	112738625	rs7633507	C	T	1540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=30;ExcessHet=6.9897;FS=3.288;MQ=59.63;MQRankSum=0.937;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-5.170e-01;SOR=0.407;VQSLOD=-3.640e-02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,19:30:99:1|0:112738608_C_G:539,0,381:112738608
chr3	112935138	rs4682130	C	G	13126.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=168;ExcessHet=3.0103;FS=0.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=-3.430e-01;SOR=0.628;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,75:168:99:1874,0,2295
chr3	112990308	rs9843707	T	C	806.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.89;ReadPosRankSum=-2.450e+00;SOR=1.839;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:100,0,131
chr3	112993063	rs13093350	C	T	1550.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.710e-01;DB;DP=14;ExcessHet=1.5490;FS=3.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.00;ReadPosRankSum=-1.250e-01;SOR=2.400;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:201,0,259
chr3	112993367	rs13094203	G	A	11585.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=257;ExcessHet=1.5490;FS=1.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=-7.020e-01;SOR=0.814;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,120:257:99:2895,0,3270
chr3	112997554	rs775228	A	G	7385.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510e-01;DB;DP=200;ExcessHet=1.5490;FS=0.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.766;SOR=0.636;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,84:200:99:1993,0,2982
chr3	112998268	rs2650100	G	A	3197.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166e+00;DB;DP=82;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.61;ReadPosRankSum=-4.700e-01;SOR=0.696;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,38:82:99:891,0,1154
chr3	112999611	rs775229	A	G	2842.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.251e+00;DB;DP=52;ExcessHet=1.5490;FS=4.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=-4.610e-01;SOR=0.283;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,29:52:99:825,0,708
chr3	113004155	rs41271355	G	A	1580.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311e+00;DB;DP=34;ExcessHet=1.5490;FS=1.724;MQ=59.80;MQRankSum=1.06;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=1.90;SOR=1.463;VQSLOD=-3.071e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,17:34:99:508,0,509
chr3	113005754	rs5022662	A	T	515.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.780e-01;DB;DP=16;ExcessHet=3.9794;FS=9.781;MQ=60.00;MQRankSum=0.00;QD=12.26;ReadPosRankSum=1.00;SOR=2.684;VQSLOD=14.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:108,0,341
chr3	113012797	rs810209	G	A	3865.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.384e+00;DB;DP=73;ExcessHet=1.5490;FS=2.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=0.288;SOR=1.036;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,40:73:99:928,0,879
chr3	113012974	rs775217	A	G	2275.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=31;ExcessHet=1.5490;FS=1.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=0.434;SOR=1.078;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:294,0,594
chr3	113013848	rs11398178	A	AT	349.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.922e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=0.551;SOR=0.387;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:104,0,220
chr3	113015436	rs808949	G	C	1550.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760e+00;DB;DP=18;ExcessHet=1.5490;FS=7.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=0.445;SOR=4.664;VQSLOD=13.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:343,0,257
chr3	113015464	rs3829889	G	A	1616.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=38;ExcessHet=1.5490;FS=4.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=0.015;SOR=0.202;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:459,0,599
chr3	113015553	rs808950	A	C	4483.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.932e+00;DB;DP=99;ExcessHet=1.5490;FS=3.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=0.595;SOR=0.444;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,48:99:99:1128,0,1397
chr3	113015956	rs712530	T	C	162.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=1.38;SOR=1.609;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,70
chr3	113022870	rs4682484	T	C	7095.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.530;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=0.449;SOR=0.688;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2653,273,0
chr3	113022996	rs2270782	G	A	1679.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;DB;DP=29;ExcessHet=1.5490;FS=1.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=-6.630e-01;SOR=0.958;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,7:29:99:162,0,639
chr3	113024018	rs2270785	T	C	4282.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.949;DB;DP=91;ExcessHet=1.5490;FS=1.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=0.542;SOR=0.560;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,37:91:99:834,0,1246
chr3	113027214	rs775231	A	C	1740.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=25;ExcessHet=1.5490;FS=2.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.85;ReadPosRankSum=0.142;SOR=1.863;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:577,0,257
chr3	113045561	rs3732809	A	G	818.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.33;ReadPosRankSum=1.29;SOR=2.753;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:94:94,0,181
chr3	113046640	rs13064411	A	G	627.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=40;ExcessHet=3.9794;FS=2.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.14;ReadPosRankSum=1.08;SOR=1.075;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:413,0,553
chr3	113119301	rs7647220	C	T	403.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=8;ExcessHet=3.9794;FS=11.083;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=-3.190e-01;SOR=3.767;VQSLOD=12.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:64:201,0,64
chr3	113122524	rs6808394	T	G	104.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:112,0,103
chr3	113126043	rs6438146	C	T	345.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=1.73;SOR=0.793;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:58:58,0,273
chr3	113138763	rs2129434	T	G	1011.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.835e+00;DB;DP=41;ExcessHet=3.9794;FS=1.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=1.04;SOR=1.063;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:526,0,617
chr3	113146271	rs9869318	T	C	477.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=0.920;SOR=0.922;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:339,0,116
chr3	113164109	rs2054823	A	G	3391.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DB;DP=57;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=1.14;SOR=0.651;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:757,0,725
chr3	113169426	.	AT	A	85.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.70;ReadPosRankSum=1.45;SOR=0.330;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:13:12:12,0,189
chr3	113172110	rs13091945	T	C	50.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.32;ReadPosRankSum=0.619;SOR=0.169;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,215
chr3	113175944	rs5851894	TA	T	1005.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;DB;DP=20;ExcessHet=1.5490;FS=2.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=-1.323e+00;SOR=1.662;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:258,0,257
chr3	113176122	rs7637618	G	A	3409.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e-02;DB;DP=77;ExcessHet=1.5490;FS=3.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=-1.550e+00;SOR=0.538;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,44:77:99:1129,0,801
chr3	113184282	rs9836396	T	C	67.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:75,0,31
chr3	113207758	rs7625841	G	A	2135.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.547e+00;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=1.25;SOR=0.639;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:427,0,409
chr3	113211957	rs3732803	T	C	784.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.40;ReadPosRankSum=-5.600e-01;SOR=0.569;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:98:326,0,98
chr3	113212041	rs1471884	G	A	2689.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=47;ExcessHet=1.5490;FS=2.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=0.336;SOR=0.457;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:595,0,530
chr3	113218206	rs6798938	C	T	554.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=-7.300e-01;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:183,0,128
chr3	113222036	rs11537650	G	A	786.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=30;ExcessHet=3.9794;FS=0.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=0.874;SOR=0.542;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:307,0,439
chr3	113285185	rs375522521	TTG	T	963.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.51;ReadPosRankSum=1.35;SOR=1.094;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,12:21:99:328,0,236
chr3	113299816	.	G	A	179.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DP=19;ExcessHet=3.0103;FS=8.929;MQ=60.00;MQRankSum=0.00;QD=9.43;ReadPosRankSum=0.263;SOR=3.126;VQSLOD=12.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:188,0,379
chr3	113300183	rs2271494	A	T	2247.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=-2.200e-02;SOR=0.855;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,14:29:99:0|1:113300183_A_T:363,0,429:113300183
chr3	113313947	rs2614193	C	T	553.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.697e+00;DB;DP=16;ExcessHet=3.9794;FS=6.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-1.288e+00;SOR=2.636;VQSLOD=18.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:251,0,265
chr3	113314010	rs2614192	C	T	55.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=1.11;SOR=0.307;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,160
chr3	113322302	rs41271365	T	C	278.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=1.96;SOR=1.609;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:77:116,0,77
chr3	113330757	rs55955952	CT	C	521.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.832;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.91;ReadPosRankSum=-8.030e-01;SOR=1.483;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:149,18,0
chr3	113331289	rs9842516	T	G	4741.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=101;ExcessHet=6.9897;FS=4.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-2.110e-01;SOR=1.004;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,50:101:99:1253,0,1240
chr3	113373930	rs930818	A	G	7243.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=0.702;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2499,245,0
chr3	113375077	rs75025102	T	C	1314.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-4.450e-01;SOR=0.743;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,49:101:99:1323,0,1430
chr3	113376110	rs112313093	TTGC	T	5704.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070e-01;DB;DP=52;ExcessHet=3.9794;FS=0.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.83;ReadPosRankSum=1.47;SOR=0.634;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,33:52:99:1267,0,638
chr3	113441152	rs35989573	A	G	228.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.697;SOR=0.582;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:94:94,0,176
chr3	113499458	rs1430944	G	A	3669.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=1.571;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1137,112,0
chr3	113557690	rs9990079	G	A	2323.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.216e+00;DB;DP=57;ExcessHet=6.9897;FS=1.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-1.471e+00;SOR=0.493;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,30:57:99:879,0,905
chr3	113557787	rs372553869	AGCC	A	18506.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=1.007;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,120:120:99:5366,362,0
chr3	113594377	rs13079383	A	G	2166.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=93;ExcessHet=3.9794;FS=2.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.116;SOR=0.698;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,50:93:99:1195,0,848
chr3	113594577	rs10662527	C	CAT	1186.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.45;SOR=6.593;VQSLOD=4.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr3	113595156	rs2712350	C	G	4786.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.44;SOR=1.768;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1480,129,0
chr3	113595269	rs13096064	A	G	359.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=0.263;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:137,0,171
chr3	113619872	rs2632244	C	T	5073.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=1.654;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1188,114,0
chr3	113631884	rs2712341	A	C	1976.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.564;SOR=0.689;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,30:45:99:716,0,284
chr3	113655207	rs3765114	C	T	505.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-01;DB;DP=58;ExcessHet=3.0103;FS=2.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=0.986;SOR=1.105;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,23:58:99:514,0,922
chr3	113656833	rs1963015	C	G	360.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=0.312;SOR=0.527;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:77:369,0,77
chr3	113656852	rs11309736	C	CA	287.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.880e-01;DB;DP=26;ExcessHet=6.9897;FS=0.925;MQ=59.77;MQRankSum=0.00;QD=3.89;ReadPosRankSum=-4.010e-01;SOR=0.884;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,10:26:99:155,0,133
chr3	113659308	rs2029228	G	C	694.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=-2.433e+00;SOR=0.826;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:703,0,351
chr3	113664183	rs5851910	CAG	C	132.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.487;SOR=0.804;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,4:13:99:141,0,376
chr3	113673125	rs11921691	A	G	3315.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=99;ExcessHet=3.9794;FS=0.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=1.62;SOR=0.655;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,60:99:99:1793,0,879
chr3	113679725	rs3732785	C	T	2154.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104e+00;DB;DP=60;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-9.600e-02;SOR=0.730;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,30:60:99:863,0,894
chr3	113720624	rs6438178	C	T	5576.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.50;SOR=2.908;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1713,141,0
chr3	113784767	rs2242316	T	G	287.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-1.678e+00;SOR=0.836;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:296,0,177
chr3	113795834	rs7631864	G	A	569.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.610e-01;DB;DP=40;ExcessHet=3.0103;FS=1.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=1.59;SOR=0.412;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:578,0,530
chr3	113801826	rs13086657	C	T	1190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=94;ExcessHet=3.0103;FS=0.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.378;SOR=0.542;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,47:94:99:1199,0,1013
chr3	113801965	rs13071100	T	C	494.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=-2.600e-02;SOR=0.582;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,19:56:99:503,0,1084
chr3	113849751	rs75982648	G	A	139.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-9.360e-01;SOR=0.892;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:148,0,116
chr3	113849907	rs149281192	CACTTA	C	2210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=128;ExcessHet=3.0103;FS=0.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=1.37;SOR=0.778;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:70,58:128:99:2219,0,4307
chr3	113850489	rs4592996	T	C	385.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.64;ReadPosRankSum=-1.383e+00;SOR=2.833;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0
chr3	113858350	rs2251177	C	T	1604.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=3.865;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:296,27,0
chr3	113866551	rs9880168	A	G	88.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.02;ReadPosRankSum=-1.790e-01;SOR=0.078;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:97:97,0,229
chr3	113878467	rs71653627	A	G	234.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=0.887;SOR=0.693;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:19:243,0,19
chr3	113890815	rs6280	C	T	2496.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DB;DP=54;ExcessHet=3.9794;FS=7.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-5.570e-01;SOR=1.289;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:638,0,756
chr3	113955055	rs11316836	GA	G	1964.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.312;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.83;ReadPosRankSum=1.00;SOR=1.423;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,24:27:2:557,2,0
chr3	113955164	rs3732782	T	G	6874.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.40;DB;DP=66;ExcessHet=3.0103;FS=3.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=2.26;SOR=0.450;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2527,201,0
chr3	113955187	rs3732781	A	C	858.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.502;SOR=0.732;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,33:75:99:867,0,1047
chr3	113955265	rs6438190	G	A	7287.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.343e+00;DB;DP=83;ExcessHet=3.0103;FS=1.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=-6.620e-01;SOR=0.566;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2807,249,0
chr3	113955320	rs6438191	C	T	8066.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.182e+00;DB;DP=105;ExcessHet=3.0103;FS=4.882;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.29;ReadPosRankSum=-1.556e+00;SOR=0.441;VQSLOD=7.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3366,314,0
chr3	113955820	rs3732780	G	C	5361.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.428e+00;DB;DP=121;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-6.760e-01;SOR=0.688;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,56:121:99:1297,0,1684
chr3	114012467	rs2693052	C	T	282.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr3	114026553	rs7639194	A	G	3206.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.101e+00;DB;DP=45;ExcessHet=3.0103;FS=7.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-1.272e+00;SOR=0.221;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1315,135,0
chr3	114026673	rs11714612	A	G	966.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DB;DP=90;ExcessHet=3.0103;FS=0.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=1.89;SOR=0.546;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,42:90:99:975,0,1108
chr3	114027065	rs35641088	C	CGTGT	636.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=35.48;SOR=2.448;VQSLOD=4.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,15:15:45:653,45,0
chr3	114099335	.	A	AT	537.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=20;ExcessHet=3.9794;FS=1.642;MQ=60.00;MQRankSum=0.00;QD=12.79;ReadPosRankSum=-7.530e-01;SOR=0.438;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,13:20:99:305,0,138
chr3	114832106	rs114988287	C	T	50.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=-7.120e-01;SOR=0.223;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,174
chr3	115394705	rs982206	T	C	528.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.03;ReadPosRankSum=-1.645e+00;SOR=2.584;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr3	116163634	rs138580275	GAC	G	1786.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=54;ExcessHet=3.9794;FS=1.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-6.400e-02;SOR=0.514;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,40:54:99:1187,0,361
chr3	116568984	rs7427242	C	G	400.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=30;ExcessHet=3.0103;FS=1.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-6.640e-01;SOR=1.296;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:409,0,331
chr3	116728295	rs11381408	G	GA	400.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.994;DB;DP=23;ExcessHet=3.9794;FS=1.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.851;SOR=0.434;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,13:23:99:335,0,241
chr3	116746161	rs12629737	A	T	436.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=58.53;MQRankSum=-7.920e-01;NEGATIVE_TRAIN_SITE;QD=27.31;ReadPosRankSum=0.652;SOR=2.049;VQSLOD=-1.250e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:347,27,0
chr3	116746175	rs12629740	A	G	806.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=58.94;POSITIVE_TRAIN_SITE;QD=37.37;SOR=6.273;VQSLOD=4.85;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,12:12:36:443,36,0
chr3	116746261	rs17730203	C	T	1517.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.470e-01;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=59.79;MQRankSum=-7.780e-01;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=1.61;SOR=0.934;VQSLOD=1.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1139,90,0
chr3	116746298	rs17662604	G	C	452.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.869e+00;DB;DP=62;ExcessHet=3.0103;FS=1.109;MQ=57.20;MQRankSum=0.680;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=0.898;SOR=0.495;VQSLOD=-3.454e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,22:62:99:461,0,1121
chr3	116746374	rs35725689	C	T	3367.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.853;DB;DP=84;ExcessHet=1.5490;FS=1.670;MQ=52.46;MQRankSum=-3.773e+00;NEGATIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=0.267;SOR=0.518;VQSLOD=-2.991e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2549,252,0
chr3	116746457	rs201120646	GTTA	G	7521.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=56.22;QD=31.20;SOR=1.234;VQSLOD=3.51;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,62:62:99:1|1:116746457_GTTA_G:2744,193,0:116746457
chr3	116746476	rs12185920	A	T	3452.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=57;ExcessHet=1.5490;FS=3.590;MQ=56.85;MQRankSum=-3.919e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=-1.681e+00;SOR=1.058;VQSLOD=-6.018e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,57:57:99:1|1:116746457_GTTA_G:2498,175,0:116746457
chr3	116746566	rs58655930	CA	C	2956.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.87;SOR=2.141;VQSLOD=3.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:837,84,0
chr3	118269774	rs9816586	A	G	11125.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=30.73;SOR=1.051;VQSLOD=4.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3149,309,0
chr3	118269825	rs57227846	GT	G	5511.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=27.98;SOR=1.892;VQSLOD=4.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1461,156,0
chr3	118621664	rs36052974	C	A	5307.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.424;DB;DP=218;ExcessHet=3.9794;FS=1.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.469;SOR=0.793;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,111:218:99:2800,0,2656
chr3	118621833	rs73185803	T	C	2082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.317e+00;DB;DP=73;ExcessHet=3.9794;FS=3.425;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.881;SOR=1.046;VQSLOD=6.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1034,0,944
chr3	118623414	rs4687959	T	C	249.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:35:78,0,35
chr3	118624369	rs62275716	C	T	1547.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=33;ExcessHet=6.9897;FS=1.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.498;SOR=0.891;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:348,0,556
chr3	118624631	rs6782002	G	A	463.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=14;ExcessHet=3.9794;FS=4.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=-7.460e-01;SOR=2.409;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:252,0,149
chr3	118645118	rs9848979	A	G	1002.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.980e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=-9.290e-01;SOR=0.627;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,19:27:99:522,0,210
chr3	118645201	rs16829163	A	T	197.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.9794;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.00;SOR=0.096;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:149,0,60
chr3	118649060	rs2903250	G	T	4539.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.132;DB;DP=71;ExcessHet=3.9794;FS=1.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=0.764;SOR=0.604;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,32:71:99:808,0,1020
chr3	118753298	rs79392388	T	C	1914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=155;ExcessHet=3.0103;FS=8.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-2.300e-02;SOR=1.358;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,71:155:99:1923,0,1911
chr3	118824042	rs112783701	A	ATTC	1024.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.420e-01;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=-2.038e+00;SOR=0.593;VQSLOD=6.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,27:53:99:1033,0,1100
chr3	118865970	rs4077930	G	A	810.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=87;ExcessHet=3.0103;FS=4.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=0.315;SOR=0.956;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,31:87:99:819,0,1471
chr3	118866376	rs56317615	C	T	1403.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.570e-01;DB;DP=61;ExcessHet=3.9794;FS=1.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.96;ReadPosRankSum=0.816;SOR=0.846;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,28:61:99:632,0,812
chr3	118866515	rs9864127	C	T	959.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.28;ReadPosRankSum=-1.111e+00;SOR=2.985;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:339,30,0
chr3	118870222	rs73185896	G	C	934.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=-5.680e-01;SOR=0.796;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:319,0,230
chr3	118878789	rs13077000	C	T	1376.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320e-01;DB;DP=97;ExcessHet=3.0103;FS=1.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-2.035e+00;SOR=0.901;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,58:97:99:1385,0,887
chr3	118909159	rs9840317	A	G	8384.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=0.723;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1955,194,0
chr3	118909962	rs3796356	T	C	2662.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.055e+00;DB;DP=40;ExcessHet=3.0103;FS=3.426;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-1.816e+00;SOR=0.307;VQSLOD=6.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1257,119,0
chr3	118909987	rs3796357	C	T	1890.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.721e+00;DB;DP=19;ExcessHet=3.0103;FS=2.845;MQ=59.73;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.00;ReadPosRankSum=0.093;SOR=1.918;VQSLOD=4.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:764,57,0
chr3	118913261	rs36002465	T	TC	607.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=37;ExcessHet=3.9794;FS=5.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=2.14;SOR=1.501;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,11:37:99:259,0,784
chr3	118917641	rs41271389	T	C	372.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-4.300e-02;SOR=0.495;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:60:60,0,193
chr3	118922650	rs55795433	C	CA	212.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DB;DP=13;ExcessHet=3.9794;FS=4.314;MQ=60.00;MQRankSum=0.00;QD=7.86;ReadPosRankSum=-8.320e-01;SOR=0.074;VQSLOD=5.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:174,0,144
chr3	118931389	rs6784208	C	T	11572.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.98;SOR=0.802;VQSLOD=19.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4126,425,0
chr3	118931541	rs72655937	A	G	608.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.191e+00;DB;DP=34;ExcessHet=3.0103;FS=8.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-1.470e-01;SOR=0.045;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,23:34:99:617,0,371
chr3	118931669	rs6784717	G	T	697.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=4.407;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:247,18,0
chr3	118935216	rs72655936	T	A	640.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DB;DP=33;ExcessHet=3.0103;FS=1.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=0.786;SOR=0.446;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,21:33:99:649,0,320
chr3	118935278	rs34867718	C	T	268.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DB;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;QD=33.56;ReadPosRankSum=1.15;SOR=2.526;VQSLOD=18.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,7:8:13:0|1:118935278_C_T:276,0,13:118935278
chr3	118935282	rs11278608	CACACGCACAT	C	345.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=8;ExcessHet=3.9794;FS=2.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=1.15;SOR=2.303;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,7:8:13:0|1:118935278_C_T:276,0,13:118935278
chr3	118935405	rs9857127	C	T	104.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:17:112,0,17
chr3	118937453	rs72655935	C	G	212.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=1.60;SOR=0.473;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:221,0,316
chr3	118943234	rs9824387	G	A	175.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-1.465e+00;SOR=1.609;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:69:0|1:118943234_G_A:183,0,69:118943234
chr3	118943242	rs186068913	A	G	57.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.60;ReadPosRankSum=1.11;SOR=0.307;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:65:1|0:118943234_G_A:65,0,162:118943234
chr3	118945578	rs3752377	T	C	289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.220e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=-7.090e-01;SOR=0.675;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:298,0,396
chr3	118945614	rs3752376	G	A	423.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=33;ExcessHet=3.0103;FS=1.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.579;SOR=1.270;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:432,0,477
chr3	118945796	rs3764779	G	C	2406.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.090e-01;DB;DP=107;ExcessHet=3.9794;FS=2.277;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-7.850e-01;SOR=0.556;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,42:107:99:976,0,1705
chr3	118948618	rs4422293	G	C	499.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.847e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.725;SOR=0.709;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:266,0,307
chr3	118949145	rs7625069	G	A	147.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.55;SOR=3.258;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	119013714	rs72960626	C	A	764.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650e-01;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=1.09;SOR=0.557;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:773,0,588
chr3	119013928	rs3732412	A	T	4883.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=84;ExcessHet=6.9897;FS=10.860;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=-1.108e+00;SOR=0.344;VQSLOD=18.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,51:84:99:1174,0,870
chr3	119013987	rs10707359	CT	C	1021.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.830e-01;DB;DP=45;ExcessHet=3.9794;FS=3.366;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-1.290e+00;SOR=0.362;VQSLOD=6.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,21:45:99:469,0,447
chr3	119084114	rs116187120	G	A	302.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.186e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=-5.930e-01;SOR=0.446;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:90:311,0,90
chr3	119099598	rs2318370	A	G	234.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.05;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,1:3:34:34,0,71
chr3	119112163	rs370792276	ATCAAGCT	A	99.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.135;SOR=0.283;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:99:108,0,479
chr3	119118104	rs4688001	A	G	11744.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=0.827;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3193,300,0
chr3	119120577	rs10511390	G	C	4014.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.485;DB;DP=62;ExcessHet=3.9794;FS=5.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=0.028;SOR=0.465;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,31:62:99:748,0,723
chr3	119128398	rs2305249	G	A	622.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DB;DP=57;ExcessHet=3.0103;FS=5.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.130e-01;SOR=0.434;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:631,0,853
chr3	119128628	rs1463139	A	G	2557.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.250e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.58;ReadPosRankSum=1.53;SOR=0.631;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,10:27:99:0|1:119128628_A_G:369,0,692:119128628
chr3	119128634	rs1463138	T	C	1780.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=26;ExcessHet=3.9794;FS=2.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.43;ReadPosRankSum=1.48;SOR=1.292;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,10:26:99:0|1:119128628_A_G:372,0,660:119128628
chr3	119128712	rs12636976	T	A	267.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.70;ReadPosRankSum=0.00;SOR=2.584;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:65:129,0,65
chr3	119132554	rs4687855	A	G	1444.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.52;SOR=4.921;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:417,30,0
chr3	119133183	rs3732413	G	A	8449.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=0.776;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2387,219,0
chr3	119151227	rs9872589	A	G	69.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=2.303;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	119154523	rs36059542	TA	T	231.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-2.100e-01;SOR=2.584;VQSLOD=6.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:12:47,0,12
chr3	119157138	rs6438528	G	A	161.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=3.611;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:47,6,0
chr3	119170218	rs2178318	A	G	5119.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.376e+00;DB;DP=44;ExcessHet=3.0103;FS=5.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=1.39;SOR=1.257;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1420,132,0
chr3	119170371	rs4687859	G	A	832.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=4.615;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:288,21,0
chr3	119171280	rs1919586	C	G	7613.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=0.816;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2196,210,0
chr3	119177000	rs148969274	C	T	1463.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=-4.150e-01;SOR=0.655;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,62:121:99:1472,0,1395
chr3	119188895	rs6438531	C	G	3707.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.07;SOR=2.723;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1299,111,0
chr3	119196334	rs3732419	G	T	5162.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=54;ExcessHet=3.0103;FS=8.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=0.206;SOR=1.371;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1696,161,0
chr3	119196373	.	A	G	583.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.577e+00;DP=43;ExcessHet=3.0103;FS=5.084;MQ=60.00;MQRankSum=0.00;QD=13.56;ReadPosRankSum=-1.361e+00;SOR=0.194;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:592,0,600
chr3	119197016	rs6777535	A	G	522.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=5.549;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:224,18,0
chr3	119197285	rs4688005	A	G	6786.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.88;SOR=1.034;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1722,177,0
chr3	119198873	rs4688007	G	A	13885.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=0.846;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4637,470,0
chr3	119204063	rs58041964	CA	C	332.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.32;ReadPosRankSum=0.00;SOR=1.136;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:43:91,0,43
chr3	119205541	rs2276713	C	T	3115.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-01;DB;DP=86;ExcessHet=6.9897;FS=2.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-3.090e-01;SOR=0.534;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,40:86:99:976,0,1332
chr3	119209658	rs62263444	A	G	933.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.356e+00;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.152;SOR=0.627;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:159,0,305
chr3	119210190	rs6763253	G	T	423.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.66;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,76
chr3	119210668	rs11720423	G	A	469.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=-5.240e-01;SOR=1.085;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,111
chr3	119217939	rs11317621	CT	C	185.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DB;DP=10;ExcessHet=6.9897;FS=7.909;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.41;ReadPosRankSum=0.669;SOR=2.584;VQSLOD=4.30;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,4:10:40:97,0,40
chr3	119219833	rs2293371	C	G	638.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.609e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.317;SOR=0.646;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:136,0,110
chr3	119222456	rs1131265	G	C	461.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DB;DP=38;ExcessHet=3.0103;FS=4.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-1.380e+00;SOR=0.212;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,17:38:99:470,0,593
chr3	119222585	rs11358423	CT	C	613.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.21;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-6.820e-01;SOR=0.760;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:248,30,0
chr3	119235977	rs4447803	C	A	2034.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.200e-02;DB;DP=46;ExcessHet=6.9897;FS=3.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.197;SOR=0.473;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,16:46:99:388,0,800
chr3	119236017	rs4461452	G	T	4281.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=52;ExcessHet=3.9794;FS=0.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=-4.410e-01;SOR=0.654;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,15:52:99:375,0,1037
chr3	119236446	rs7642502	G	A	233.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.98;SOR=3.912;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	119246385	rs3830649	AG	A	235.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=-1.534e+00;SOR=2.833;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:16:244,0,16
chr3	119246827	rs6778945	T	C	3867.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=1.705;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1049,102,0
chr3	119248967	rs2629396	G	T	1904.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.244;DB;DP=33;ExcessHet=6.9897;FS=2.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-1.282e+00;SOR=0.938;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:524,0,536
chr3	119256308	rs112552070	C	T	299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.912e+00;DB;DP=17;ExcessHet=3.0103;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=-3.037e+00;SOR=1.981;VQSLOD=21.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:308,0,285
chr3	119263680	rs2228017	C	T	3507.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.555e+00;DB;DP=91;ExcessHet=6.9897;FS=7.278;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=9.000e-03;SOR=0.410;VQSLOD=6.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,43:91:99:1017,0,1366
chr3	119276377	rs66604554	A	G	1159.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576e+00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.682;SOR=0.633;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:294,0,474
chr3	119305075	rs2242494	G	A	1988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466e+00;DB;DP=64;ExcessHet=3.9794;FS=1.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.07;SOR=0.574;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:919,0,887
chr3	119305169	rs20569	G	A	2448.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=79;ExcessHet=3.9794;FS=2.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=2.70;SOR=0.932;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,34:79:99:975,0,1279
chr3	119305379	rs25676	T	A	9031.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=144;ExcessHet=3.9794;FS=1.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=1.33;SOR=0.518;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,70:144:99:1850,0,1945
chr3	119319522	rs2688637	G	A	269.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=-5.240e-01;SOR=0.976;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:101,0,63
chr3	119325514	rs3216711	TG	T	85.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.334;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=0.992;SOR=0.283;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:94:94,0,215
chr3	119325552	rs530389	A	G	142.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.064;SOR=1.022;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:150,0,294
chr3	119325907	rs2251566	G	A	588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=30;ExcessHet=3.9794;FS=3.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.10;ReadPosRankSum=-3.980e-01;SOR=0.314;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:317,0,536
chr3	119327604	rs5852212	GC	G	464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.231;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.49;ReadPosRankSum=-4.900e-02;SOR=0.667;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:311,0,407
chr3	119327653	rs1723969	T	C	1085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DB;DP=51;ExcessHet=3.9794;FS=0.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=0.460;SOR=0.574;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,21:51:99:0|1:119327653_T_C:768,0,1355:119327653
chr3	119327677	rs114103322	G	A	898.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-02;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-6.320e-01;SOR=0.588;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,27:63:99:0|1:119327653_T_C:907,0,1443:119327653
chr3	119328449	rs3832185	CAGGCTTT	C	2246.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=55;ExcessHet=3.9794;FS=2.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=0.492;SOR=0.960;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,38:55:99:1503,0,1398
chr3	119331874	rs2272270	C	T	1511.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=74;ExcessHet=3.9794;FS=1.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-4.040e-01;SOR=0.826;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,27:74:99:698,0,1133
chr3	119331892	rs2272269	C	G	1357.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=74;ExcessHet=3.9794;FS=3.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=-7.450e-01;SOR=1.030;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,24:74:99:623,0,1240
chr3	119332042	rs2272268	G	A	487.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278e+00;DB;DP=15;ExcessHet=3.9794;FS=3.837;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=1.09;SOR=0.223;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:202,0,257
chr3	119334624	rs1797843	C	G	363.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.210;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.08;ReadPosRankSum=-1.383e+00;SOR=1.981;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
chr3	119334683	rs140066395	AAAAAG	A	946.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DB;DP=20;ExcessHet=3.9794;FS=6.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=1.71;SOR=0.113;VQSLOD=5.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,13:20:99:525,0,216
chr3	119334986	rs2247660	G	A	5168.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DB;DP=104;ExcessHet=3.9794;FS=0.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.372;SOR=0.731;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1167,0,1421
chr3	119347365	rs2280579	T	C	68.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=2.303;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	119347400	rs2280580	A	G	201.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.35;SOR=3.611;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr3	119348345	rs3054091	A	ATT,ATTT	3507.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.33;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=24.02;ReadPosRankSum=-8.170e-01;SOR=0.720;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,20,17:58:99:1790,464,336,423,0,371
chr3	119361250	rs8007	A	G	339.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330e-01;DB;DP=19;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=-2.032e+00;SOR=1.473;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:348,0,164
chr3	119362318	rs67683909	A	G	144.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.703;SOR=0.330;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:90:153,0,90
chr3	119362369	rs6783324	G	A	99.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:108,0,31
chr3	119366883	rs484809	C	T	1354.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.521;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=-2.440e-01;SOR=0.814;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:82:308,0,82
chr3	119367153	rs150310901	T	A	1538.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.68;ReadPosRankSum=-1.900e-01;SOR=0.732;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,51:87:99:1547,0,859
chr3	119367390	rs2688643	T	C	7387.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.840e-01;DB;DP=95;ExcessHet=3.0103;FS=3.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=-2.390e-01;SOR=0.469;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2992,285,0
chr3	119367706	rs1985121	G	T	395.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=0.464;SOR=0.495;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:54:54,0,192
chr3	119373257	rs2688631	A	G	367.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=1.18;SOR=0.610;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:183,0,257
chr3	119373301	rs2688630	G	A	574.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.930e-01;DB;DP=20;ExcessHet=3.9794;FS=1.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=2.81;SOR=1.528;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:269,0,351
chr3	119373315	rs2688629	T	C	716.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=22;ExcessHet=3.9794;FS=6.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.902;SOR=2.360;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:290,0,330
chr3	119379475	.	TTCTC	T	66.89	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.44;SOR=2.303;VQSLOD=4.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	119379514	.	T	TCCTCCCCCCCACA	79.05	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=32.69;SOR=2.303;VQSLOD=5.09;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	119384163	rs1720143	G	T	4033.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.162e+00;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.337;SOR=0.658;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1748,174,0
chr3	119393850	.	T	C	63.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.18;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:1:72,0,1
chr3	119395662	rs523476	C	G	1918.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=69;ExcessHet=3.9794;FS=2.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.354;SOR=0.918;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,35:69:99:901,0,868
chr3	119395865	.	CGGGGCGGGG	C,CGG	437.81	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.33;SOR=4.804;VQSLOD=4.97;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,7,3:10:86:456,117,86,275,0,250
chr3	119395912	rs191351133	G	A	535.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.30;MQRankSum=-6.060e-01;QD=25.49;ReadPosRankSum=1.68;SOR=0.722;VQSLOD=-6.354e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,14:21:99:0|1:119395912_G_A:544,0,231:119395912
chr3	119395922	.	GGGCAGAGGGCAGAA	G	566.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.36;MQRankSum=-5.860e-01;QD=25.74;ReadPosRankSum=0.741;SOR=0.836;VQSLOD=0.622;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,15:22:99:0|1:119395912_G_A:575,0,228:119395912
chr3	119395929	.	GGGCAGAA	*,G	243.54	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=21;ExcessHet=0.4576;FS=0.000;MQ=59.33;QD=11.60;SOR=0.990;VQSLOD=0.549;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,15,6:21:99:887,255,207,603,0,578
chr3	119395962	rs373100398	GAGGGCAGAGGCCGT	G	526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800e-02;DB;DP=27;ExcessHet=3.0103;FS=1.527;MQ=59.49;MQRankSum=-8.890e-01;QD=19.49;ReadPosRankSum=0.693;SOR=1.140;VQSLOD=0.441;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,14:27:99:535,0,498
chr3	119421934	rs7634701	A	G	938.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.174e+00;DB;DP=66;ExcessHet=3.0103;FS=12.989;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-8.680e-01;SOR=0.103;VQSLOD=16.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,35:66:99:947,0,921
chr3	119421963	rs7612861	C	T	1277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=97;ExcessHet=3.0103;FS=0.826;MQ=59.99;MQRankSum=-9.690e-01;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.938;SOR=0.551;VQSLOD=1.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1286,0,1220
chr3	119422106	rs7612954	C	A	1333.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527e+00;DB;DP=130;ExcessHet=3.0103;FS=4.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-8.210e-01;SOR=0.391;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,59:130:99:1342,0,1825
chr3	119422204	rs7624672	T	C	4639.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=4.370;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1293,93,0
chr3	119422312	rs7624768	T	C	855.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.50;SOR=6.091;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr3	119426307	rs9848716	T	C	576.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-1.820e-01;SOR=0.836;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:239,0,377
chr3	119428425	rs4444744	T	A	180	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.00;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:73,0,32
chr3	119434527	rs6438544	G	C	5223.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.020;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.190;SOR=0.705;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2268,195,0
chr3	119449159	rs61742290	G	A	464.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=45;ExcessHet=3.0103;FS=3.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=-6.670e-01;SOR=0.260;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,19:45:99:473,0,745
chr3	119501780	rs2472668	G	A	4085.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=-4.940e-01;SOR=0.686;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1025,0,899
chr3	119501798	rs2461831	T	A	6211.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=1.772;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1871,181,0
chr3	119501960	rs2472669	T	C	439.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=5.136;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr3	119529113	rs3732356	G	T	12033.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=2.412;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4155,383,0
chr3	119533773	rs6797879	T	C	4694.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=24.56;SOR=2.267;VQSLOD=3.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1436,126,0
chr3	119533910	rs4058490	T	C	12825.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=29.69;SOR=0.770;VQSLOD=4.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4268,453,0
chr3	119534097	rs142129698	A	G	1179.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.870e-01;DB;DP=102;ExcessHet=3.0103;FS=3.697;MQ=60.00;MQRankSum=0.00;QD=11.56;ReadPosRankSum=0.742;SOR=0.636;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1188,0,1529
chr3	119534153	rs2276707	C	T	1780.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DB;DP=102;ExcessHet=3.9794;FS=1.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=0.510;SOR=0.843;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,42:102:99:956,0,1487
chr3	119535674	rs10714748	GA	G,GAA	754.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.784e+00;DB;DP=28;ExcessHet=3.0103;FS=4.361;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-1.640e-01;SOR=0.245;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,5,10:28:3:244,199,427,3,0,103
chr3	119535795	rs11929668	C	G	6631.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=88;ExcessHet=3.9794;FS=1.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=2.82;SOR=0.574;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3171,264,0
chr3	119595503	rs1719895	A	G	528.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.890e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=0.189;SOR=2.712;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:236,18,0
chr3	119631814	rs6438552	A	G	431.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.35;SOR=4.977;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:236,18,0
chr3	119885675	rs60947625	G	A	445.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.770e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=1.36;SOR=0.818;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:454,0,277
chr3	119886548	rs9858566	G	C	17929.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.60;DB;DP=336;ExcessHet=3.9794;FS=0.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=2.05;SOR=0.608;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,336:336:99:10417,1006,0
chr3	119886776	rs902790	T	A	6305.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.541e+00;DB;DP=88;ExcessHet=3.9794;FS=0.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.96;ReadPosRankSum=2.24;SOR=0.645;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2932,264,0
chr3	119900212	rs1488765	G	C	3572.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.496e+00;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=0.613;SOR=0.733;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1779,168,0
chr3	119900260	rs1488764	T	C	1801.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.463e+00;DB;DP=23;ExcessHet=3.9794;FS=1.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.096;SOR=0.468;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:777,69,0
chr3	119904125	rs902791	A	G	5724.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.260e-01;DB;DP=100;ExcessHet=3.9794;FS=1.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-2.740e-01;SOR=0.603;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2948,300,0
chr3	119904315	rs902792	G	C	5663.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DB;DP=84;ExcessHet=3.9794;FS=0.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.017;SOR=0.645;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2826,251,0
chr3	119905641	rs2319542	G	A	4101.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=64;ExcessHet=3.9794;FS=1.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.455;SOR=0.647;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2182,191,0
chr3	119911603	rs6764549	C	T	580.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.27;ReadPosRankSum=1.29;SOR=2.833;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr3	119911667	rs2319543	G	A	1691.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.680e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=0.204;SOR=0.746;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:924,81,0
chr3	119911843	rs142006576	C	T	1042.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.426;DB;DP=92;ExcessHet=3.0103;FS=5.297;MQ=60.00;MQRankSum=0.00;QD=11.33;ReadPosRankSum=1.39;SOR=0.859;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,42:92:99:1051,0,1239
chr3	119912297	rs902793	C	A	1508.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.612e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-7.730e-01;SOR=0.621;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,20:21:53:644,53,0
chr3	119912406	rs902794	A	G	235.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-9.880e-01;SOR=0.582;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr3	120068124	rs186960035	C	T	440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.201e+00;DB;DP=39;ExcessHet=3.0103;FS=1.360;MQ=60.00;MQRankSum=0.00;QD=11.29;ReadPosRankSum=-2.080e+00;SOR=0.399;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,20:39:99:449,0,526
chr3	120121411	rs1147699	A	G	297.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,71
chr3	120122332	rs2030414	G	C	439.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=1.25;SOR=1.730;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:185,0,222
chr3	120123556	rs1147700	A	C	47.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=-1.834e+00;SOR=0.307;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:56:56,0,151
chr3	120123953	rs1147701	T	A	1942.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=4.977;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:418,33,0
chr3	120130883	rs55876532	GACACACACACACACATACATGC	G	1780.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=37;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.44;ReadPosRankSum=0.653;SOR=0.562;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,20:37:99:795,0,648
chr3	120130899	rs1259326	T	C,*	1846.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.63;DB;DP=36;ExcessHet=3.0103;FS=4.147;MQ=60.00;MQRankSum=0.00;QD=15.91;ReadPosRankSum=-5.990e-01;SOR=1.368;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,16,20:36:99:1420,840,792,597,0,612
chr3	120134720	rs3215378	A	AG	616.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=-3.060e-01;SOR=0.784;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,3:24:49:49,0,761
chr3	120134883	rs2272515	T	C	2551.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=114;ExcessHet=3.9794;FS=1.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=0.921;SOR=0.795;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,48:114:99:1044,0,1627
chr3	120169641	rs1147708	T	C	32233.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=417;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.17;SOR=0.842;VQSLOD=16.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,417:417:99:11862,1249,0
chr3	120314961	rs144211467	C	G	72.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.00;SOR=0.693;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	120320757	rs804970	A	G	288.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.29;SOR=4.174;VQSLOD=19.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr3	120320939	rs12762	C	T	683.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DB;DP=37;ExcessHet=3.9794;FS=1.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.395;SOR=0.527;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:462,0,490
chr3	120347374	rs137923025	T	G	549.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.277;SOR=0.791;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:558,0,599
chr3	120351943	rs112229599	T	C	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.413;SOR=0.569;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:216,0,239
chr3	120352566	rs143066858	C	T	104.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-6.520e-01;SOR=0.223;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:113,0,110
chr3	120360331	rs804971	T	C	439.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.249;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=0.386;SOR=1.493;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	120366522	rs137975469	CA	C	239.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-7.060e-01;SOR=0.569;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:248,0,285
chr3	120369575	rs3817627	T	G	5678.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.90;DB;DP=99;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=2.13;SOR=0.717;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1280,0,1476
chr3	120369683	rs140977117	G	A	1243.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900e-02;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=1.78;SOR=0.674;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,50:98:99:1252,0,1258
chr3	120371414	rs2551607	G	A	8437.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=0.889;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2568,234,0
chr3	120371643	rs3732367	A	G	130.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.440e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=0.652;SOR=0.941;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:96:139,0,96
chr3	120389316	rs2255543	T	A	8006.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=110;ExcessHet=3.0103;FS=5.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.64;ReadPosRankSum=-1.260e-01;SOR=0.852;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,59:110:99:1405,0,1265
chr3	120409526	rs2288096	C	T	718.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.034e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-1.187e+00;SOR=0.578;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:210,0,261
chr3	120413158	rs7612975	G	A	4766.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=1.880;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:900,83,0
chr3	120428430	rs111603672	A	AAGACAAAGCAC	114.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.31;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:99:123,0,125
chr3	120428621	rs11720353	T	C	487.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DB;DP=49;ExcessHet=3.0103;FS=8.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-4.850e-01;SOR=0.318;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,21:49:99:496,0,723
chr3	120461576	rs7647895	T	C	361.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.00;SOR=1.314;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:370,0,326
chr3	120470070	rs9838458	T	C	32.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:27:40,0,27
chr3	120489926	rs2877413	G	T	59.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,69
chr3	120500446	rs2229308	T	A	431.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.607;DB;DP=37;ExcessHet=3.0103;FS=3.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-1.738e+00;SOR=1.270;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:440,0,476
chr3	120673980	rs73185491	T	G	172.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=-3.280e-01;SOR=0.859;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:181,0,362
chr3	120833994	rs17195251	G	A	2386.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DB;DP=38;ExcessHet=1.5490;FS=5.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.11;ReadPosRankSum=-1.304e+00;SOR=1.785;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,27:38:99:794,0,250
chr3	120952486	rs61996323	G	A	812.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=53;ExcessHet=3.0103;FS=1.067;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-5.420e-01;SOR=0.612;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,31:53:99:821,0,458
chr3	120976051	rs17249244	C	G	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DB;DP=82;ExcessHet=3.0103;FS=4.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.83;ReadPosRankSum=1.05;SOR=1.204;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,33:82:99:733,0,1198
chr3	121100116	rs35624942	GT	G	3349.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=2.543;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:69:671,69,0
chr3	121100414	rs17740072	A	G	1934.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.41;DB;DP=29;ExcessHet=1.5490;FS=2.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=1.06;SOR=0.385;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:971,86,0
chr3	121132268	rs9849118	T	A	1587.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.22;SOR=7.378;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:576,42,0
chr3	121137976	rs6782025	C	T	5200.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.96;SOR=0.957;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1252,126,0
chr3	121138015	rs6782033	C	T	4048.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=1.102;VQSLOD=18.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:818,83,0
chr3	121154974	rs1381057	T	C	5740.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=1.109;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1199,114,0
chr3	121155198	rs2030531	C	T	2643.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=1.981;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:933,87,0
chr3	121159102	rs6769377	G	A	1121.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.14;SOR=6.666;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr3	121186543	rs1381058	A	G	4220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.60;SOR=2.303;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1051,96,0
chr3	121195302	rs10591564	TACAC	T	4690.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.850e-01;DB;DP=31;ExcessHet=3.0103;FS=6.247;MQ=60.00;MQRankSum=0.00;QD=29.21;SOR=2.381;VQSLOD=4.62;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,30:31:85:1338,85,0
chr3	121202131	rs10576436	CTT	C	1061.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.92;SOR=4.091;VQSLOD=5.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr3	121202433	rs201304336	TA	T	274.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DB;DP=21;ExcessHet=6.9897;FS=1.164;MQ=59.83;MQRankSum=0.00;QD=4.66;ReadPosRankSum=0.739;SOR=0.523;VQSLOD=5.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,9:21:99:128,0,175
chr3	121208833	rs3218649	G	C	9205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.74;SOR=0.898;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2015,180,0
chr3	121212277	rs11351457	AT	A	3824.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.33;SOR=2.117;VQSLOD=5.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1231,129,0
chr3	121228833	rs3732406	A	C	4055.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.59;SOR=2.813;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:938,78,0
chr3	121238749	rs702018	G	A	5617.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=31.56;SOR=0.861;VQSLOD=4.34;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1476,147,0
chr3	121241058	rs13059229	C	G	2313.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=3.477;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:851,75,0
chr3	121263720	rs702017	C	A	10191.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=1.684;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2823,259,0
chr3	121265043	rs13065220	C	T	893.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.68;SOR=1.426;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr3	121265176	rs3806614	G	A	3206.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=2.059;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:961,78,0
chr3	121265522	rs11714774	A	C	8226.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.99;SOR=1.266;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2435,225,0
chr3	121265599	.	TA	T	269.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DP=25;ExcessHet=6.9897;FS=4.907;MQ=59.98;MQRankSum=0.00;QD=3.00;ReadPosRankSum=-2.920e-01;SOR=0.240;VQSLOD=4.73;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:25:56:56,0,402
chr3	121295552	rs113058973	CT	C	68.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=22.88;SOR=1.179;VQSLOD=2.97;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:84,9,0
chr3	121295834	rs67439929	C	T	4320.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=111;ExcessHet=1.5490;FS=0.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.366;SOR=0.613;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3226,332,0
chr3	121304661	rs4676730	G	A	966.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.75;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=0.489;SOR=1.292;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:617,48,0
chr3	121304710	rs486813	C	T	2925.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=2.303;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1055,96,0
chr3	121339354	rs7640859	T	C	3986.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.69;SOR=2.531;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:826,69,0
chr3	121340016	rs7631939	C	G	75.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.26;SOR=2.303;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr3	121350573	rs1128163	A	G	404.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.00;SOR=0.437;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:121350573_A_G:178,0,140:121350573
chr3	121350583	rs1128159	C	T	611.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.668e+00;DB;DP=10;ExcessHet=1.5490;FS=2.935;MQ=60.00;MQRankSum=0.00;QD=30.60;ReadPosRankSum=-7.120e-01;SOR=1.981;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:121350573_A_G:391,30,0:121350573
chr3	121350966	rs9869984	C	G	6948.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.94;SOR=0.890;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1520,135,0
chr3	121351315	rs150627065	G	GGGCTCAGGCTCA	8965.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440e-01;DB;DP=258;ExcessHet=3.9794;FS=3.204;MQ=60.00;MQRankSum=0.00;QD=16.79;ReadPosRankSum=-9.120e-01;SOR=0.760;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:130,128:258:99:5021,0,5063
chr3	121351338	rs2070180	C	T	3110.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=272;ExcessHet=3.0103;FS=1.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.957;SOR=0.787;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,135:272:99:3119,0,5135
chr3	121351480	rs9815500	T	C	1669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.46;DB;DP=40;ExcessHet=3.9794;FS=3.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.666;SOR=1.499;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:619,0,674
chr3	121353254	rs2070179	T	C	4708.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=103;ExcessHet=1.5490;FS=7.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=0.575;SOR=1.035;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3633,309,0
chr3	121353291	rs34667636	G	A	1333.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.142e+00;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-2.390e-01;SOR=0.754;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,51:95:99:1342,0,1248
chr3	121354381	rs7620842	A	T	718.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.972;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.65;ReadPosRankSum=1.71;SOR=0.880;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:549,39,0
chr3	121354583	rs3772126	G	A	2217.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.160e-01;DB;DP=78;ExcessHet=3.9794;FS=3.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=1.47;SOR=0.504;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,40:78:99:931,0,993
chr3	121355102	rs6802033	C	A	181.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr3	121363680	rs34440810	C	T	1754.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DB;DP=133;ExcessHet=3.0103;FS=0.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.164;SOR=0.768;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,69:133:99:1763,0,1567
chr3	121376507	rs11720859	A	T	101.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=1.44;SOR=0.693;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:94:110,0,94
chr3	121383297	rs7153	G	A	697.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.660e-01;DB;DP=21;ExcessHet=3.9794;FS=6.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=1.61;SOR=0.174;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:252,0,377
chr3	121387784	rs9819530	T	G	53.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,72
chr3	121388362	rs11363204	AT	A	1248.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=4.615;VQSLOD=6.35;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:541,54,0
chr3	121400725	rs1463736	G	A	705.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=27;ExcessHet=3.9794;FS=3.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.048;SOR=1.718;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,7:27:99:220,0,602
chr3	121414061	rs1127412	C	T	4874.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DB;DP=133;ExcessHet=3.9794;FS=1.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=1.52;SOR=0.796;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,54:133:99:1518,0,2231
chr3	121415610	rs33988592	G	A	1467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=101;ExcessHet=3.0103;FS=3.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=-1.211e+00;SOR=0.391;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,53:101:99:1476,0,1260
chr3	121415720	rs3732410	T	C	3045.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=102;ExcessHet=3.9794;FS=1.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=0.499;SOR=0.595;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,51:102:99:1314,0,1355
chr3	121416623	rs3732407	G	C	2870.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=76;ExcessHet=3.9794;FS=1.096;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=1.46;SOR=0.794;VQSLOD=6.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1077,0,1028
chr3	121421179	rs3732408	G	A	120.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=-3.600e-02;SOR=0.941;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:80:129,0,80
chr3	121433926	rs9854052	T	A	635.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.606e+00;DB;DP=8;ExcessHet=1.5490;FS=3.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=-5.270e-01;SOR=2.124;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:319,24,0
chr3	121435621	rs9832267	T	C	3422.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=53;ExcessHet=1.5490;FS=6.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=0.676;SOR=0.627;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,53:53:99:1|1:121435621_T_C:2371,163,0:121435621
chr3	121435624	rs9812411	C	T	3422.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.410e-01;DB;DP=52;ExcessHet=1.5490;FS=5.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=0.826;SOR=0.644;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:121435621_T_C:2371,163,0:121435621
chr3	121448675	rs28497949	T	A	443.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=34;ExcessHet=3.0103;FS=3.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-2.590e-01;SOR=1.516;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:452,0,440
chr3	121488995	rs1135750	C	G	110.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.08;ReadPosRankSum=0.967;SOR=3.229;VQSLOD=17.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:28:44,0,28
chr3	121500479	rs149985093	TAC	T,TACACAC	6987.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.136e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.38;ReadPosRankSum=-1.103e+00;SOR=1.138;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,29,15:45:99:1439,580,556,915,0,1187
chr3	121507231	rs1141528	A	T	959.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=79;ExcessHet=3.0103;FS=2.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-1.054e+00;SOR=0.900;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,39:79:99:968,0,891
chr3	121507371	rs141690316	CTTTTTA	C	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=0.140;SOR=0.368;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:354,0,382
chr3	121507415	rs4073474	C	T	784.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=-6.190e-01;SOR=0.859;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:63:198,0,63
chr3	121508830	rs6802815	A	T	2982.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=54;ExcessHet=3.9794;FS=4.977;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.935;SOR=1.106;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,26:54:99:543,0,682
chr3	121514458	rs141330650	TA	T	1224.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.61;ReadPosRankSum=0.440;SOR=0.618;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,8:30:99:106,0,405
chr3	121516299	rs144924182	TAA	T	343.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=-4.310e-01;SOR=1.609;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:54:112,0,54
chr3	121516335	rs11288085	TA	T	123.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=1.15;SOR=0.693;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:13:66,0,13
chr3	121526037	rs4298081	T	G	99.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.87;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:108,0,64
chr3	121526099	rs4582090	A	G	1814.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.50;ReadPosRankSum=0.141;SOR=0.611;VQSLOD=7.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,12:18:99:0|1:121526099_A_G:486,0,205:121526099
chr3	121526107	rs4280673	C	T	520.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.630e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.01;ReadPosRankSum=-5.780e-01;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,14:20:99:0|1:121526099_A_G:529,0,199:121526099
chr3	121526152	rs5852278	TA	T	396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=25;ExcessHet=3.0103;FS=1.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.652;SOR=0.814;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,16:25:99:405,0,186
chr3	121526204	rs4543051	G	A	2404.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-02;DB;DP=26;ExcessHet=3.9794;FS=5.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-8.800e-02;SOR=0.819;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:427,0,195
chr3	121547527	rs1920320	A	G	222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=12;ExcessHet=3.0103;FS=6.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-7.450e-01;SOR=0.039;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:231,0,137
chr3	121563271	rs11717089	C	T	556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-1.944e+00;SOR=0.892;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:565,0,624
chr3	121563285	rs11721291	T	C	653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.960e-01;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.952e+00;SOR=0.671;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:662,0,632
chr3	121563552	rs35469357	A	AT	310.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=-1.000e-03;SOR=1.112;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:319,0,197
chr3	121613205	rs4603998	G	C	1210.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=4.047;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr3	121630194	rs6803757	T	C	263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=-2.070e-01;SOR=1.802;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:86:272,0,86
chr3	121630328	rs6438687	A	G	1038.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=56;ExcessHet=3.0103;FS=2.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=-1.333e+00;SOR=0.402;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,37:56:99:1047,0,452
chr3	121631841	rs1523519	G	A	2344.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=120;ExcessHet=3.9794;FS=2.270;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=0.493;SOR=0.558;VQSLOD=6.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,45:120:99:1099,0,1885
chr3	121633904	rs2049330	G	A	243.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=-1.189e+00;SOR=0.836;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:252,0,225
chr3	121633964	rs2049331	C	T	714.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.530e-01;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.632;SOR=0.804;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:723,0,709
chr3	121634171	rs3215370	A	AT	1025.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=96;ExcessHet=3.0103;FS=3.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-1.449e+00;SOR=1.148;VQSLOD=6.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,46:96:99:1034,0,1215
chr3	121634410	rs9812515	T	A	568.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.694;SOR=0.795;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:577,0,568
chr3	121640912	rs2332044	T	G	88.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.02;ReadPosRankSum=-1.910e-01;SOR=0.180;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:97:97,0,289
chr3	121641329	rs34354261	T	TA	34.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.73;ReadPosRankSum=-1.501e+00;SOR=0.307;VQSLOD=6.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:43:43,0,104
chr3	121641352	rs11920521	A	G	54.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-8.420e-01;SOR=0.307;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,151
chr3	121641383	rs11920547	A	G	100.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=0.00;SOR=0.916;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:109,0,28
chr3	121641528	rs7637569	G	A	861.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120e+00;DB;DP=51;ExcessHet=3.0103;FS=1.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=0.565;SOR=0.951;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,30:51:99:870,0,575
chr3	121641693	rs2293616	G	A	1257.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=87;ExcessHet=3.0103;FS=2.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=1.20;SOR=1.088;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,47:87:99:1266,0,1004
chr3	121641821	rs2293615	A	G	747.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=76;ExcessHet=3.0103;FS=2.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-2.030e-01;SOR=0.425;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,29:76:99:756,0,1400
chr3	121642048	rs3817601	A	T	1605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=153;ExcessHet=3.0103;FS=2.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.865;SOR=0.537;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,75:153:99:1614,0,1740
chr3	121642246	rs2293614	C	T	134.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=1.01;SOR=0.941;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:91:143,0,91
chr3	121643143	rs3215371	A	AT	487.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.540e-01;DB;DP=44;ExcessHet=3.0103;FS=1.778;MQ=59.85;MQRankSum=-9.550e-01;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-3.410e-01;SOR=0.258;VQSLOD=1.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,22:44:99:496,0,498
chr3	121643163	rs2293611	G	C	2975.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.841e+00;DB;DP=53;ExcessHet=6.9897;FS=1.910;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=1.35;SOR=0.530;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,27:53:99:667,0,1106
chr3	121643170	rs2257109	A	T	910.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.270e-01;DB;DP=63;ExcessHet=3.0103;FS=2.488;MQ=59.90;MQRankSum=-9.220e-01;QD=14.45;ReadPosRankSum=-3.580e-01;SOR=1.210;VQSLOD=0.208;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,33:63:99:919,0,1130
chr3	121643303	rs2257115	T	A	1883.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.340e-01;DB;DP=127;ExcessHet=3.0103;FS=1.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=1.06;SOR=0.558;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,75:127:99:1892,0,1293
chr3	121643337	rs2257119	G	A	1721.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DB;DP=113;ExcessHet=3.0103;FS=1.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-5.820e-01;SOR=0.545;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,67:113:99:1730,0,1028
chr3	121643372	rs2257120	C	T	1411.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.190;DB;DP=90;ExcessHet=3.0103;FS=0.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-1.238e+00;SOR=0.798;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,52:90:99:1420,0,899
chr3	121643427	rs2257123	G	A	1047.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=50;ExcessHet=3.0103;FS=5.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=0.720;SOR=1.933;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,27:50:99:0|1:121643427_G_A:1056,0,782:121643427
chr3	121643436	rs2257124	G	A	943.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=0.460;SOR=0.620;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,23:41:99:0|1:121643427_G_A:952,0,684:121643427
chr3	121643447	rs34567530	A	AT	470.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.583;SOR=0.674;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,19:33:99:479,0,329
chr3	121643699	rs2257132	G	A	166.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.16;ReadPosRankSum=-2.430e-01;SOR=0.569;VQSLOD=22.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,9:40:99:175,0,825
chr3	121643804	rs2257212	C	T	653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DB;DP=92;ExcessHet=3.0103;FS=1.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.10;ReadPosRankSum=-2.275e+00;SOR=0.479;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,28:92:99:662,0,1716
chr3	121643893	rs2257214	T	C	433.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.310e-01;DB;DP=54;ExcessHet=3.0103;FS=2.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.02;ReadPosRankSum=1.95;SOR=0.327;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,21:54:99:442,0,870
chr3	121646382	rs1882003	T	G	106.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:115,0,65
chr3	121646495	rs1882002	C	T	404.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=-5.870e-01;SOR=0.551;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:413,0,476
chr3	121646641	rs1143670	A	G	896.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.170e-01;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=1.12;SOR=0.693;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,36:80:99:905,0,1128
chr3	121646759	rs3762819	G	A	477.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-3.970e-01;SOR=0.941;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:486,0,511
chr3	121647286	rs1143671	C	T	1856.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214e+00;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.33;SOR=0.728;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,74:140:99:1865,0,1677
chr3	121647467	rs1316301	C	T	386.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.165e+00;DB;DP=28;ExcessHet=3.0103;FS=6.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.161;SOR=2.973;VQSLOD=16.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:395,0,464
chr3	121647596	rs1882000	G	A	53.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,137
chr3	121647782	rs1316397	C	G	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=0.893;SOR=1.214;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:725,0,404
chr3	121648168	rs1143672	G	A	800.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e-01;DB;DP=69;ExcessHet=3.0103;FS=0.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-1.619e+00;SOR=0.774;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:809,0,974
chr3	121657967	rs874742	T	C	112.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.99;SOR=2.833;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr3	121658082	rs874741	A	G	218.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.124;SOR=1.828;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:227,0,217
chr3	121659197	rs3817599	G	A	2820.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.550e-01;DB;DP=46;ExcessHet=3.9794;FS=0.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=-1.460e-01;SOR=0.590;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1452,138,0
chr3	121711763	rs12638492	G	A	506.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=14;ExcessHet=6.9897;FS=2.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=-1.176e+00;SOR=0.180;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:227,0,137
chr3	121712051	rs2877561	A	C	7025.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=184;ExcessHet=6.9897;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-3.800e-02;SOR=0.670;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,90:184:99:2368,0,2349
chr3	121712980	rs3915060	C	T	4209.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=120;ExcessHet=6.9897;FS=1.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.117;SOR=0.793;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,51:120:99:1266,0,1625
chr3	121720514	rs35657414	GT	G	1063.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DB;DP=87;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.04;ReadPosRankSum=-6.320e-01;SOR=0.684;VQSLOD=5.30;culprit=QD	GT:AD:DP:GQ:PL	0/1:41,38:87:99:744,0,872
chr3	121724038	rs3942629	G	A	2392.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.842e+00;DB;DP=46;ExcessHet=6.9897;FS=1.885;MQ=59.31;MQRankSum=-1.375e+00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-1.108e+00;SOR=0.867;VQSLOD=0.611;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,30:46:99:913,0,398
chr3	121725703	rs11924058	A	G	2329.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.970e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-1.095e+00;SOR=0.749;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:322,0,282
chr3	121805763	rs10561530	AGT	A	200.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.33;SOR=1.981;VQSLOD=5.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	121810427	rs57304749	CT	C	7377.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.350e-01;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.87;ReadPosRankSum=-5.520e-01;SOR=0.449;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1955,195,0
chr3	121825197	rs2681417	G	A	14677.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=0.909;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4569,440,0
chr3	121836966	rs10580127	TGA	T	8630.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=0.792;VQSLOD=5.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2278,166,0
chr3	121838319	rs1129055	G	A	676.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145e+00;DB;DP=44;ExcessHet=3.9794;FS=0.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.90;ReadPosRankSum=-7.000e-02;SOR=0.539;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,11:44:99:175,0,899
chr3	121975859	.	G	A	690.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e-01;DP=68;ExcessHet=3.0103;FS=5.140;MQ=60.00;MQRankSum=0.00;QD=10.15;ReadPosRankSum=0.580;SOR=1.352;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,28:68:99:699,0,1065
chr3	121976253	rs9869985	G	A	3096.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.86;SOR=4.307;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:612,51,0
chr3	121980242	rs3749207	T	C	506.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.01;SOR=5.283;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr3	122000871	rs4678174	C	T	8683.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.019;DB;DP=111;ExcessHet=3.0103;FS=2.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.19;ReadPosRankSum=-2.680e-01;SOR=0.551;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3465,333,0
chr3	122001246	rs2270917	C	T	906.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=-3.440e-01;SOR=1.236;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:237,21,0
chr3	122002253	rs2134225	A	C	721.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=5.784;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:255,18,0
chr3	122003045	rs2036400	G	C	22288.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=198;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=1.007;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,198:198:99:6501,594,0
chr3	122003832	rs1801726	G	C	19577.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=1.378;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:6332,554,0
chr3	122004098	rs4677948	A	T	3174.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.51;SOR=2.808;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:722,63,0
chr3	122056432	rs17589	C	T	3429.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.98;SOR=2.004;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1741,158,0
chr3	122078677	.	TAAAAAAAAAA	T	581.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DP=17;ExcessHet=3.9794;FS=2.038;MQ=59.42;MQRankSum=0.910;QD=24.23;ReadPosRankSum=0.524;SOR=1.329;VQSLOD=0.105;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,11:17:20:482,0,20
chr3	122081659	rs9857709	A	G	1270.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=8;ExcessHet=3.0103;FS=11.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=-3.058e+00;SOR=0.105;VQSLOD=16.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:27:1|1:122081659_A_G:381,27,0:122081659
chr3	122081660	rs9857710	A	C	1270.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;DB;DP=9;ExcessHet=3.0103;FS=8.864;MQ=60.00;MQRankSum=0.00;QD=25.42;ReadPosRankSum=-3.294e+00;SOR=0.132;VQSLOD=17.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:122081659_A_G:381,27,0:122081659
chr3	122086960	rs3749212	C	T	3586.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.563e+00;DB;DP=49;ExcessHet=3.0103;FS=4.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=0.806;SOR=0.367;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1389,146,0
chr3	122101721	rs6771201	C	T	428.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.95;ReadPosRankSum=-6.740e-01;SOR=2.833;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr3	122128394	rs1127343	G	A	371.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.58;ReadPosRankSum=-9.670e-01;SOR=0.804;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:303,24,0
chr3	122128466	rs4306808	G	C	1141.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.85;SOR=4.479;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:601,48,0
chr3	122128519	rs10511410	G	C	1360.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.356e+00;DB;DP=31;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.17;ReadPosRankSum=0.00;SOR=0.986;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1024,93,0
chr3	122133830	rs3749213	T	G	3468.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.570e-01;DB;DP=72;ExcessHet=1.5490;FS=5.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=-5.940e-01;SOR=1.228;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,71:72:99:2259,175,0
chr3	122145810	rs4677950	T	A	7256.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.82;SOR=2.939;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1811,156,0
chr3	122168341	rs3749209	C	A	3008.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.950e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.16;ReadPosRankSum=-6.220e-01;SOR=0.749;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1064,99,0
chr3	122172462	rs9818362	T	C	202.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=3.611;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr3	122186141	rs75578364	A	G	1419.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.550;SOR=0.616;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:532,0,491
chr3	122186188	rs4678193	C	T	6472.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=0.770;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1479,156,0
chr3	122215166	rs10625209	A	AACACACACACACAC	775.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.481;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.32;ReadPosRankSum=0.430;SOR=2.200;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:15:225,15,0
chr3	122247606	rs7628052	A	G	1868.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e-02;DB;DP=38;ExcessHet=1.5490;FS=2.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=1.76;SOR=0.404;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1150,113,0
chr3	122259606	rs9851180	T	C	6079.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.642e+00;DB;DP=82;ExcessHet=3.0103;FS=8.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=0.668;SOR=0.249;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2587,246,0
chr3	122259738	rs145948621	G	GT	1645.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.085;DB;DP=17;ExcessHet=3.9794;FS=1.573;MQ=60.00;MQRankSum=0.00;QD=29.38;ReadPosRankSum=0.284;SOR=1.214;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,9:17:40:204,0,40
chr3	122259745	rs9831600	G	T	2750.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.67;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.74;MQRankSum=0.00;QD=26.78;ReadPosRankSum=-1.730e+00;SOR=1.048;VQSLOD=4.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:84:1086,84,0
chr3	122259782	rs9868934	A	G	1068.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.339;DB;DP=7;ExcessHet=3.0103;FS=4.381;MQ=59.33;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=30.54;ReadPosRankSum=0.069;SOR=2.833;VQSLOD=-1.211e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:277,21,0
chr3	122269380	rs1979853	A	G	1015.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.26;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=-1.321e+00;SOR=1.739;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:34:485,34,0
chr3	122271670	rs7631465	C	T	576.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.03;ReadPosRankSum=1.01;SOR=2.833;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:242,18,0
chr3	122274757	rs73192127	G	C	4548.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.22;DB;DP=84;ExcessHet=1.5490;FS=2.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=-1.408e+00;SOR=0.936;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2885,252,0
chr3	122277034	rs9289197	A	G	639.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.965e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=1.49;SOR=1.981;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr3	122285005	rs12485294	G	A	1811.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=19;ExcessHet=3.0103;FS=2.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.79;ReadPosRankSum=0.992;SOR=1.584;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:702,57,0
chr3	122287289	rs9839782	T	C	459.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.66;ReadPosRankSum=-1.645e+00;SOR=1.739;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:366,30,0
chr3	122288210	rs2332285	G	A	7356.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=-5.510e-01;SOR=0.693;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2666,249,0
chr3	122296638	rs1875272	G	A	7753.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.082e+00;DB;DP=181;ExcessHet=1.5490;FS=2.870;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=0.513;SOR=0.529;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5528,540,0
chr3	122296802	rs190522327	C	A	166.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.860e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-9.000e-02;SOR=1.911;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:175,0,154
chr3	122296834	rs2332240	A	G	1308.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=-1.410e-01;SOR=3.797;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:258,18,0
chr3	122345870	rs17208928	C	T	848.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.476e+00;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-1.319e+00;SOR=0.693;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,34:68:99:857,0,993
chr3	122354037	rs1106346	A	G	4987.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=115;ExcessHet=1.5490;FS=1.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=-6.090e-01;SOR=0.863;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3675,344,0
chr3	122354716	rs61754895	C	T	3272.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.70;SOR=0.802;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3289,337,0
chr3	122404357	rs10711299	CT	C	211.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e-01;DB;DP=19;ExcessHet=6.9897;FS=4.670;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.04;ReadPosRankSum=-8.080e-01;SOR=1.593;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,8:19:99:0|1:122404357_CT_C:120,0,459:122404357
chr3	122404380	rs13097869	G	A	436.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=0.422;SOR=1.179;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,12:18:99:1|0:122404357_CT_C:445,0,216:122404357
chr3	122404397	rs34110650	A	C	438.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.39;ReadPosRankSum=1.08;SOR=1.765;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,11:16:99:1|0:122404357_CT_C:447,0,177:122404357
chr3	122406077	rs790131	G	A	1141.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.676e+00;DB;DP=37;ExcessHet=3.9794;FS=3.725;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.291;SOR=0.347;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:433,0,704
chr3	122418750	rs11719086	G	A	2009.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.910e-01;DB;DP=128;ExcessHet=3.0103;FS=3.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=0.605;SOR=0.689;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,75:128:99:2018,0,1385
chr3	122419292	rs7632072	A	G	772.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.544e+00;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.536e+00;SOR=0.746;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,33:65:99:781,0,830
chr3	122432171	rs6770902	G	A	1107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-02;DB;DP=75;ExcessHet=3.0103;FS=3.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=1.46;SOR=1.142;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,41:75:99:1116,0,842
chr3	122437321	rs7645033	T	C	7072.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.290e-01;DB;DP=110;ExcessHet=3.9794;FS=0.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=0.168;SOR=0.766;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,59:110:99:1470,0,1426
chr3	122437901	rs115027980	A	G	209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080e-01;DB;DP=20;ExcessHet=3.0103;FS=2.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=0.119;SOR=1.609;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:218,0,406
chr3	122439062	rs73856279	C	T	491.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=34;ExcessHet=3.0103;FS=1.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-5.900e-01;SOR=1.292;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:500,0,433
chr3	122439371	rs60507179	T	C	486.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-1.830e-01;SOR=0.495;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:495,0,578
chr3	122439511	rs78443051	A	G	960.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630e-01;DB;DP=63;ExcessHet=3.0103;FS=2.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=-9.850e-01;SOR=0.412;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,37:63:99:969,0,651
chr3	122439629	rs16833452	T	A	1196.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.450e+00;DB;DP=78;ExcessHet=3.0103;FS=0.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-1.070e+00;SOR=0.908;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,49:78:99:1205,0,711
chr3	122439754	rs12492888	C	G	309.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=-3.222e+00;SOR=0.804;VQSLOD=21.72;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:318,0,228
chr3	122446642	rs2303883	C	T	523.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=30;ExcessHet=3.0103;FS=7.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-3.770e-01;SOR=2.613;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:532,0,318
chr3	122447596	rs7648262	C	T	646.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.23;SOR=5.670;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:122447596_C_T:135,9,0:122447596
chr3	122447601	rs73856281	C	A	119.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=2.833;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:122447596_C_T:135,9,0:122447596
chr3	122459290	rs16338	G	GAGA	1098.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.375;DB;DP=77;ExcessHet=3.0103;FS=2.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-2.940e-01;SOR=1.150;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,29:77:99:1107,0,2387
chr3	122459732	rs35887395	G	A	637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.270e-01;DB;DP=53;ExcessHet=3.0103;FS=1.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-7.240e-01;SOR=0.536;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:646,0,865
chr3	122471407	rs72280610	TA	T	1512.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.700e-01;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.034;SOR=0.802;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,16:36:99:288,0,320
chr3	122474284	.	TA	T	43.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.79;ReadPosRankSum=1.48;SOR=0.859;VQSLOD=4.97;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,1:8:1:1,0,133
chr3	122477743	.	CA	C	432.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.340e-01;DP=3;ExcessHet=3.9794;FS=3.010;MQ=60.00;MQRankSum=0.00;QD=13.10;ReadPosRankSum=-2.780e-01;SOR=0.260;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:12:1|1:122477743_CA_C:150,12,0:122477743
chr3	122477767	rs76020932	C	A	250.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.580e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=58.51;MQRankSum=-6.600e-01;QD=22.75;ReadPosRankSum=-4.810e-01;SOR=0.293;VQSLOD=-8.054e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,8:11:78:0|1:122477743_CA_C:259,0,78:122477743
chr3	122478032	rs66939946	CCA	C,CCACACACA	1262.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.794;DB;DP=15;ExcessHet=3.0103;FS=2.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=0.934;SOR=1.714;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,9,6:15:99:493,252,225,265,0,345
chr3	122478419	rs77823789	C	T	66.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=2.303;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	122496905	rs150840525	CAT	C	72.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
chr3	122496925	rs2163182	G	A	271.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.32;SOR=4.174;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	122512631	rs3806643	G	A	1029.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.929e+00;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=-5.900e-01;SOR=0.470;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:229,0,407
chr3	122513964	rs891406	A	C	215.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=-5.240e-01;SOR=0.804;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,73
chr3	122525555	rs35035359	G	GT	90.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.11;ReadPosRankSum=1.47;SOR=0.197;VQSLOD=5.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,5:7:31:94,0,31
chr3	122551965	rs139377044	A	G	225.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-2.410e-01;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:62:234,0,62
chr3	122591230	rs147365074	G	A	1372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.075e+00;DB;DP=119;ExcessHet=3.0103;FS=2.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-1.098e+00;SOR=0.449;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,61:119:99:1381,0,1614
chr3	122598291	rs2288677	A	G	2204.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.526;DB;DP=62;ExcessHet=3.9794;FS=1.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=2.36;SOR=0.904;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:1031,0,711
chr3	122629589	rs7622250	A	G	550.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=55.24;MQRankSum=-5.660e-01;NEGATIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=0.652;SOR=0.399;VQSLOD=-2.400e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr3	122630323	rs2303982	T	G	5995.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.777;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=-7.350e-01;SOR=0.738;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:122630323_T_G:1799,126,0:122630323
chr3	122630346	rs2303983	T	C	5175.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.39;ReadPosRankSum=-1.030e+00;SOR=0.783;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,34:34:99:1|1:122630323_T_G:1530,102,0:122630323
chr3	122631896	rs2276782	A	T	8011.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.526;DB;DP=116;ExcessHet=3.0103;FS=3.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=-2.000e-01;SOR=0.492;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3889,348,0
chr3	122642263	rs7651952	G	T	237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=1.37;SOR=2.546;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:246,0,248
chr3	122642294	rs7619187	T	C	258.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=21;ExcessHet=3.0103;FS=2.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.818;SOR=1.445;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:267,0,331
chr3	122642401	rs2276780	G	A	5026.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.866e+00;DB;DP=102;ExcessHet=3.9794;FS=2.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=1.15;SOR=0.879;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,55:102:99:1246,0,1166
chr3	122642415	rs2276779	G	C	5578.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DB;DP=112;ExcessHet=3.9794;FS=2.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.787;SOR=0.753;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,59:112:99:1358,0,1252
chr3	122642590	rs2276778	G	A	1784.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=28;ExcessHet=3.9794;FS=2.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=1.31;SOR=1.166;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:443,0,351
chr3	122645027	rs75377252	T	C	51.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.54;ReadPosRankSum=-4.310e-01;SOR=0.307;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,145
chr3	122645277	rs2276777	C	T	3580.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=264;ExcessHet=3.0103;FS=2.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-1.140e+00;SOR=0.853;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,138:264:99:3589,0,3072
chr3	122645606	rs79543585	G	A	468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=0.462;SOR=1.730;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:477,0,422
chr3	122646591	rs73856750	C	A	546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567e+00;DB;DP=53;ExcessHet=3.0103;FS=1.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.587;SOR=0.482;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:555,0,632
chr3	122646828	rs2276774	A	G	928.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=69;ExcessHet=3.0103;FS=3.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.318;SOR=1.125;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:937,0,706
chr3	122646929	rs79679922	C	T	296.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-1.141e+00;SOR=0.892;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:305,0,139
chr3	122647610	rs76653630	C	T	521.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=37;ExcessHet=3.0103;FS=1.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.623;SOR=0.330;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:530,0,518
chr3	122647694	rs150936444	GT	G	280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.372;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.671;SOR=0.653;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:289,0,211
chr3	122648199	rs9867255	A	C	262.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=13;ExcessHet=3.0103;FS=3.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=1.15;SOR=0.141;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:271,0,164
chr3	122680171	rs4677985	A	G	8603.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e-01;DB;DP=173;ExcessHet=1.5490;FS=1.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.51;ReadPosRankSum=0.375;SOR=0.761;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,100:173:99:2550,0,1820
chr3	122680330	rs4677986	G	A	778.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.99;DB;DP=37;ExcessHet=3.9794;FS=5.077;MQ=59.90;MQRankSum=0.836;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.550;SOR=1.635;VQSLOD=-1.284e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,14:37:99:455,0,657
chr3	122694789	rs146381076	T	A	866.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e-01;DB;DP=69;ExcessHet=3.0103;FS=5.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-2.460e-01;SOR=0.281;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:875,0,905
chr3	122807275	rs9816193	T	C	1233.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DB;DP=35;ExcessHet=6.9897;FS=4.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.484;SOR=0.316;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,15:35:99:435,0,587
chr3	122807995	rs836860	G	A	1389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=40;ExcessHet=6.9897;FS=1.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.166;SOR=0.983;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:665,0,333
chr3	122811042	rs836863	A	G	2344.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.36;SOR=2.165;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:832,81,0
chr3	122821108	rs2717233	C	T	2126.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=3.877;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:950,81,0
chr3	122821385	rs2241961	T	C	6192.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=32.42;SOR=1.477;VQSLOD=5.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1689,162,0
chr3	122821478	rs2241962	T	A	1746.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=0.671;SOR=0.628;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:645,69,0
chr3	122821671	rs2241963	A	G	7948.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.03;SOR=0.762;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,49:49:99:1|1:122821671_A_G:2194,147,0:122821671
chr3	122821672	rs61182591	T	A	7948.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.63;SOR=0.739;VQSLOD=18.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,49:49:99:1|1:122821671_A_G:2194,147,0:122821671
chr3	122834887	rs836839	A	T	10642.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=1.360;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3556,312,0
chr3	122835210	rs836840	A	G	3056.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.73;POSITIVE_TRAIN_SITE;QD=31.42;SOR=3.042;VQSLOD=4.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:687,51,0
chr3	122835232	rs2278668	T	C	2117.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.57;POSITIVE_TRAIN_SITE;QD=29.68;SOR=3.788;VQSLOD=6.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:484,33,0
chr3	122843110	rs861375	G	T	22254.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=214;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=1.30;SOR=0.287;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,213:214:99:6605,631,0
chr3	122843212	rs2305051	C	T	16737.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.48;SOR=0.884;VQSLOD=4.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4871,441,0
chr3	122849625	rs2673334	G	A	4436.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.16;SOR=8.015;VQSLOD=24.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1514,114,0
chr3	122864436	rs8739	G	A	6454.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=104;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=0.658;SOR=0.699;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,50:104:99:1196,0,1363
chr3	122864587	rs3215241	TAGAC	T	537.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.460e-01;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-6.310e-01;SOR=1.284;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:546,0,759
chr3	122864627	rs1976715	C	G	1512.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DB;DP=22;ExcessHet=3.9794;FS=5.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.02;ReadPosRankSum=1.92;SOR=3.209;VQSLOD=17.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:402,0,367
chr3	122864807	rs3841639	T	TG	111.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:19:119,0,19
chr3	122864818	rs1567991	T	C	256.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=1.65;SOR=1.230;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:25:154,0,25
chr3	122865136	rs2673345	T	A	2078.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.588;DB;DP=39;ExcessHet=3.9794;FS=4.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=-6.490e-01;SOR=0.305;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:552,0,471
chr3	122865260	rs2247505	G	A	170.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=2.37;SOR=1.179;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:95:0|1:122865260_G_A:179,0,95:122865260
chr3	122865263	rs2673344	C	T	690.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.06;SOR=5.784;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:122865260_G_A:345,24,0:122865260
chr3	122873923	rs2717225	G	C	10367.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.900e-02;DB;DP=122;ExcessHet=3.0103;FS=1.110;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=0.359;SOR=0.803;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3757,365,0
chr3	122880118	rs3828393	G	A	2544.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=0.519;SOR=0.631;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:340,0,559
chr3	122942358	rs1546605	A	G	4483.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.74;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=0.311;SOR=0.668;VQSLOD=6.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,21:61:99:518,0,1093
chr3	122942402	rs1546604	G	A	8403.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.152e+00;DB;DP=126;ExcessHet=3.9794;FS=1.985;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=-1.033e+00;SOR=0.865;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,55:126:99:1278,0,1867
chr3	122942782	rs12487554	G	A	108.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.15;SOR=2.833;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr3	122964900	rs12493729	C	G	5109.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-01;DB;DP=107;ExcessHet=3.9794;FS=2.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=1.85;SOR=0.532;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,63:107:99:1547,0,1032
chr3	122978486	rs9289216	G	A	4036.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=-1.880e-01;SOR=0.721;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:684,0,829
chr3	122990291	rs9860349	C	T	970.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=-8.960e-01;SOR=1.055;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:285,0,291
chr3	122990702	rs1137117	A	C	528.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=0.524;SOR=0.622;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:72:107,0,72
chr3	123008519	rs4677881	T	G	2657.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.20;SOR=6.123;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:614,42,0
chr3	123009045	rs9878646	G	A	700	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=5.784;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:326,24,0
chr3	123010276	rs9809236	G	A	1567.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=144;ExcessHet=3.0103;FS=3.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.423;SOR=0.445;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,59:144:99:1576,0,2460
chr3	123010363	rs56066738	C	T	3462.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.24;DB;DP=35;ExcessHet=3.9794;FS=9.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=-2.490e-01;SOR=0.097;VQSLOD=18.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:659,0,480
chr3	123014877	rs9881951	C	T	833.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=25;ExcessHet=3.9794;FS=1.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=2.12;SOR=0.425;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:347,0,464
chr3	123015094	rs9882534	G	C	8659.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.86;SOR=1.474;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3161,338,0
chr3	123018963	rs4482616	A	G	3710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764e+00;DB;DP=175;ExcessHet=3.9794;FS=2.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-1.560e-01;SOR=0.555;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,88:175:99:2001,0,2101
chr3	123021838	rs9877581	A	G	4235.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=1.663;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1481,144,0
chr3	123021870	rs9844212	G	C	4021.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.241e+00;DB;DP=64;ExcessHet=3.0103;FS=2.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.98;ReadPosRankSum=-1.520e+00;SOR=0.431;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1854,192,0
chr3	123022740	rs4333033	G	A	1927.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.75;SOR=7.168;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:4:39:514,39,0
chr3	123036597	.	C	CAA	41.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DP=5;ExcessHet=3.0103;FS=0.000;MQ=57.01;MQRankSum=0.524;QD=8.22;ReadPosRankSum=-1.645e+00;SOR=0.446;VQSLOD=-1.169e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:49:49,0,88
chr3	123037047	rs4327330	A	C	1805.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=4.615;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:403,30,0
chr3	123038200	rs34573753	CA	C	360.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.049e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.23;ReadPosRankSum=-1.454e+00;SOR=2.833;VQSLOD=4.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr3	123047478	rs9855635	A	G	899.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200e-02;DB;DP=93;ExcessHet=3.0103;FS=1.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=1.35;SOR=0.967;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,33:93:99:908,0,1708
chr3	123047666	rs9855969	A	G	3848.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.430e-01;DB;DP=91;ExcessHet=1.5490;FS=0.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.99;ReadPosRankSum=-1.213e+00;SOR=0.789;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,41:91:99:1150,0,1430
chr3	123049707	rs9829332	G	T	704.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.372e+00;DB;DP=58;ExcessHet=3.0103;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-6.770e-01;SOR=0.478;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:713,0,930
chr3	123049938	rs6806529	A	C	651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-1.460e-01;SOR=0.836;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:660,0,613
chr3	123051230	rs9839081	G	A	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=22;ExcessHet=3.0103;FS=4.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.97;ReadPosRankSum=0.459;SOR=0.047;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:184,0,478
chr3	123066485	rs6438788	G	T	282.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.006e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-5.190e-01;SOR=1.781;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:291,0,330
chr3	123066555	rs10640874	A	AAAGG	9340.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.52;SOR=2.602;VQSLOD=5.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3510,235,0
chr3	123066883	.	A	AGTGTGT	1026.06	PASS	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.45;QD=37.94;SOR=4.712;VQSLOD=4.71;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,8:8:24:335,24,0
chr3	123086995	rs1378803	C	T	600.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.22;SOR=4.174;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	123167249	rs4678027	G	A	2788.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.17;SOR=1.516;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1140,126,0
chr3	123218229	rs1112274	G	C	160.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=-3.980e-01;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,189
chr3	123218524	rs148392509	TTAAAA	T	1062.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=48;ExcessHet=3.0103;FS=2.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=-9.400e-02;SOR=0.323;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,27:48:99:1071,0,1384
chr3	123247454	rs1006669	T	C	65.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:72:74,0,72
chr3	123345911	rs41271431	C	T	334.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=1.24;SOR=1.981;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr3	123378534	rs39639	C	G	3473.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.902e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=-7.800e-01;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=-1.074e+00;SOR=0.623;VQSLOD=2.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1334,132,0
chr3	123382831	rs820324	A	G	4783.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=2.268;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1839,153,0
chr3	123383340	rs141156567	AGGAT	A	167.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.17;SOR=1.609;VQSLOD=5.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr3	123384935	rs41304996	G	A	697.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.200e-01;DB;DP=51;ExcessHet=3.0103;FS=4.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-3.300e-01;SOR=1.558;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:706,0,676
chr3	123411589	rs40305	G	A	7874.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.371;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=1.02;SOR=0.716;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3002,285,0
chr3	123418913	rs865358	G	A	21905.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=234;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=31.52;SOR=0.918;VQSLOD=4.33;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,234:234:99:7198,700,0
chr3	123420084	.	C	CA	199	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DP=8;ExcessHet=3.9794;FS=1.661;MQ=59.07;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-6.760e-01;SOR=0.412;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,2:8:1:60,1,0
chr3	123440967	rs820355	G	A	23153.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=226;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=0.717;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,226:226:99:6878,677,0
chr3	123441179	rs820356	C	T	3849.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=48.39;QD=28.01;SOR=7.722;VQSLOD=1.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:781,60,0
chr3	123445070	rs820330	T	C	2297.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.93;SOR=6.059;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:483,39,0
chr3	123451773	rs9833275	G	C	5092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.83;SOR=1.281;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1434,141,0
chr3	123456070	rs5852360	G	GA	998.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=0.00;SOR=1.751;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:11:282,0,11
chr3	123456432	rs2168439	C	T	10521.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=2.010;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3141,313,0
chr3	123457711	rs2198766	C	A	5939.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.07;SOR=2.737;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1802,150,0
chr3	123457893	rs9840993	G	A	14423.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=0.976;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4684,461,0
chr3	123459099	rs139894563	GAAGTT	G	615.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.37;SOR=5.421;VQSLOD=6.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	123470991	rs4677901	G	T	363.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=4.615;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	123633612	rs11551801	G	A	2201.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.024e+00;DB;DP=18;ExcessHet=3.9794;FS=2.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.97;ReadPosRankSum=0.130;SOR=0.409;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:685,54,0
chr3	123634046	rs2700373	G	A	6857.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.010;DB;DP=75;ExcessHet=3.0103;FS=5.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-2.690e-01;SOR=0.392;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2288,224,0
chr3	123650432	rs2271969	A	G	1774.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=1.37;SOR=0.495;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:123650432_A_G:763,54,0:123650432
chr3	123650447	rs35352118	TA	T	1792.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e-02;DB;DP=12;ExcessHet=3.0103;FS=4.002;MQ=59.77;MQRankSum=-7.360e-01;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=0.00;SOR=2.646;VQSLOD=0.476;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:45:1|1:123650432_A_G:662,45,0:123650432
chr3	123650452	rs200913670	A	C	1370.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.40;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.75;MQRankSum=0.00;QD=32.64;ReadPosRankSum=0.750;SOR=1.662;VQSLOD=3.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:123650432_A_G:495,33,0:123650432
chr3	123652476	rs6784695	G	A	3525.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.499;DB;DP=60;ExcessHet=3.0103;FS=2.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.82;ReadPosRankSum=-9.000e-02;SOR=0.438;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1911,180,0
chr3	123665448	rs1879362	C	T	768.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.31;SOR=6.091;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr3	123665902	rs17310144	T	G	7112.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.780e-01;DB;DP=110;ExcessHet=3.9794;FS=3.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=0.468;SOR=0.533;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3613,329,0
chr3	123666192	rs17375977	C	T	2654.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.509e+00;DB;DP=37;ExcessHet=3.9794;FS=0.991;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=-4.290e-01;SOR=0.906;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1369,111,0
chr3	123688760	rs34337446	C	G	5065.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.58;DB;DP=71;ExcessHet=3.9794;FS=0.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=1.18;SOR=0.781;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2693,213,0
chr3	123694595	rs138944419	C	G	1636.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.480e-01;DB;DP=29;ExcessHet=3.0103;FS=10.371;MQ=46.00;MQRankSum=-5.390e+00;QD=13.64;ReadPosRankSum=-2.170e-01;SOR=1.862;VQSLOD=-4.887e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:971,87,0
chr3	123851972	rs7627646	G	A	761.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=0.366;SOR=0.793;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:184,0,135
chr3	124044949	rs2289778	C	T	14991.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=0.960;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4542,470,0
chr3	124065887	rs12496590	G	A	367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-1.471e+00;SOR=0.793;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:376,0,353
chr3	124093447	rs7644014	C	A	1117.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.651e+00;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=0.497;SOR=0.883;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:796,69,0
chr3	124113929	rs482285	A	T	4643.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=73;ExcessHet=3.9794;FS=0.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=0.520;SOR=0.753;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,30:73:99:797,0,1096
chr3	124128938	rs647010	A	G	3805.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=33.98;SOR=1.949;VQSLOD=6.14;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1186,110,0
chr3	124129357	rs9809750	T	G	243.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.77;SOR=3.912;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	124132263	rs2289846	A	T	7073.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=1.152;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2885,260,0
chr3	124132568	rs6762346	T	G	1875.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=6.316;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:858,60,0
chr3	124141503	rs1373928	G	A	387.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=4.804;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr3	124174337	rs4677927	A	C	1414.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=7.054;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:267,18,0
chr3	124195987	rs572145	T	C	2115.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.83;SOR=5.590;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:675,48,0
chr3	124209438	rs2289841	A	G	355.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.35;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:159,0,66
chr3	124210344	rs10755077	C	A	3458.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DB;DP=78;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=1.24;SOR=0.644;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,37:78:99:972,0,1181
chr3	124210544	rs2076716	G	A	435.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=0.177;SOR=0.622;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:162,0,223
chr3	124281980	rs2256831	T	C	3558.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146e+00;DB;DP=101;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=-5.620e-01;SOR=0.712;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,53:101:99:1290,0,1233
chr3	124303786	rs2250757	G	C	2590.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.170e-01;DB;DP=50;ExcessHet=6.9897;FS=4.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=-2.870e-01;SOR=0.646;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:692,0,719
chr3	124351316	rs1708303	G	A	5600.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530e-01;DB;DP=118;ExcessHet=3.9794;FS=4.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.55;SOR=0.925;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,51:118:99:1258,0,1736
chr3	124351424	rs1660038	T	C	7406.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=95;ExcessHet=3.9794;FS=1.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=1.75;SOR=0.832;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,45:95:99:1306,0,1239
chr3	124352484	.	GT	G	126.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DP=5;ExcessHet=3.9794;FS=8.368;MQ=60.00;MQRankSum=0.00;QD=5.28;ReadPosRankSum=-1.036e+00;SOR=0.061;VQSLOD=3.09;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:124352484_GT_G:120,0,100:124352484
chr3	124352486	.	GTGT	G	126.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DP=5;ExcessHet=3.9794;FS=8.368;MQ=60.00;MQRankSum=0.00;QD=5.28;ReadPosRankSum=-1.036e+00;SOR=0.061;VQSLOD=3.09;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:124352484_GT_G:120,0,100:124352484
chr3	124352573	rs652046	A	G	1383.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=0.231;SOR=0.724;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:309,0,137
chr3	124356460	rs3755680	A	G	420.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.28;ReadPosRankSum=1.44;SOR=1.609;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:61:0|1:124356460_A_G:241,0,61:124356460
chr3	124356462	rs667883	G	A	566.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=6;ExcessHet=6.9897;FS=4.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=-6.230e-01;SOR=2.833;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,5:6:61:0|1:124356460_A_G:241,0,61:124356460
chr3	124369640	rs11372663	T	TA	6198.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.082;DB;DP=92;ExcessHet=3.9794;FS=0.989;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=0.587;SOR=0.769;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,40:92:99:0|1:124369640_T_TA:1538,0,3195:124369640
chr3	124369650	rs2291988	T	C	2453.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=93;ExcessHet=3.9794;FS=2.756;MQ=60.00;MQRankSum=0.00;QD=15.24;ReadPosRankSum=-1.730e-01;SOR=0.507;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,43:93:99:0|1:124369640_T_TA:1603,0,3133:124369640
chr3	124374215	rs11711670	G	A	286.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=7;ExcessHet=3.9794;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.00;SOR=0.136;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:88:110,0,88
chr3	124374259	rs4677938	G	A	662.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066e+00;DB;DP=23;ExcessHet=3.9794;FS=1.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=0.858;SOR=0.304;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:348,0,403
chr3	124374405	rs4677939	A	C	1945.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=83;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.730;SOR=0.721;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,34:83:99:870,0,1259
chr3	124376653	rs106520	G	A	2765.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=75;ExcessHet=6.9897;FS=0.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-1.330e-01;SOR=0.749;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1040,0,829
chr3	124377049	rs333301	G	C	465.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=3.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=-9.670e-01;SOR=2.049;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:75,0,31
chr3	124377196	rs10804562	G	A	618.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=30;ExcessHet=3.9794;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.40;SOR=0.498;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:336,0,418
chr3	124377632	rs333300	T	C	260.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=1.15;SOR=1.802;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:101,0,26
chr3	124378386	rs333297	C	G	1128.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.912;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=1.71;SOR=0.531;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:94:94,0,165
chr3	124378412	rs10755078	A	G	478.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=7;ExcessHet=3.9794;FS=2.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=0.776;SOR=0.257;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:62:149,0,62
chr3	124378520	rs333296	A	G	163.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.72;SOR=1.981;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr3	124379641	rs333291	C	A	1224.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=25;ExcessHet=1.5490;FS=2.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=0.369;SOR=1.714;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:307,0,486
chr3	124379748	rs333290	G	C	4158.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.451e+00;DB;DP=82;ExcessHet=1.5490;FS=12.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=-7.340e-01;SOR=1.685;VQSLOD=15.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1239,0,987
chr3	124379817	rs333289	T	C	5740.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.814e+00;DB;DP=117;ExcessHet=1.5490;FS=1.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.25;ReadPosRankSum=1.63;SOR=0.682;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,67:117:99:1482,0,1209
chr3	124393074	rs333356	A	G	741.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=12;ExcessHet=1.5490;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=0.989;SOR=2.935;VQSLOD=19.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:97:97,0,283
chr3	124393595	rs333355	A	G	2286.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.108e+00;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.720;SOR=0.686;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,34:71:99:876,0,1090
chr3	124393610	rs333354	A	G	3464.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=62;ExcessHet=1.5490;FS=0.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=0.995;SOR=0.577;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:765,0,936
chr3	124396338	rs333349	T	G	2652.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DB;DP=48;ExcessHet=1.5490;FS=6.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-1.980e+00;SOR=1.456;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,24:48:99:680,0,677
chr3	124396650	rs333348	A	T	1811.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.76;ReadPosRankSum=-3.880e-01;SOR=1.210;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:441,0,228
chr3	124397249	rs35286809	AT	A	1271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=54;ExcessHet=3.9794;FS=3.481;MQ=60.00;MQRankSum=0.00;QD=10.51;ReadPosRankSum=1.16;SOR=1.068;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,31:54:99:693,0,435
chr3	124397321	rs3830412	AT	A	929.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.913;SOR=0.789;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,19:32:99:501,0,316
chr3	124397368	rs3215109	C	CT	364.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496e+00;DB;DP=11;ExcessHet=3.9794;FS=3.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-8.300e-01;SOR=0.138;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:140,0,117
chr3	124398112	rs13097459	C	T	669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=1.80;SOR=1.255;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:53:310,0,53
chr3	124398571	rs821365	A	T	5797.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801e+00;DB;DP=60;ExcessHet=3.9794;FS=0.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.72;ReadPosRankSum=-2.080e-01;SOR=0.850;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,32:60:99:0|1:124398571_A_T:1095,0,1082:124398571
chr3	124398589	rs821364	A	C	4877.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.49;ReadPosRankSum=-4.990e-01;SOR=0.825;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,21:38:99:0|1:124398571_A_T:885,0,833:124398571
chr3	124398644	rs2242425	A	G	553.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.414;SOR=0.638;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:242,0,204
chr3	124412524	rs2289428	T	G	1154.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=53;ExcessHet=3.9794;FS=4.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.77;SOR=1.203;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,19:53:99:436,0,945
chr3	124412634	rs333283	G	T	3223.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=56;ExcessHet=3.9794;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=-1.304e+00;SOR=0.623;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,28:56:99:752,0,763
chr3	124415222	rs333280	C	A	760.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DB;DP=5;ExcessHet=3.9794;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=0.085;SOR=3.352;VQSLOD=16.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:148,0,29
chr3	124416698	rs333277	A	G	1089.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.893e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.44;ReadPosRankSum=-3.300e-01;SOR=2.448;VQSLOD=2.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:124416698_A_G:270,18,0:124416698
chr3	124416711	rs333276	A	G	1040.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.78;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.12;ReadPosRankSum=0.712;SOR=2.833;VQSLOD=0.993;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:124416698_A_G:270,18,0:124416698
chr3	124436345	rs702041	G	A	1259.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=4.548;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:124436345_G_A:372,27,0:124436345
chr3	124436362	rs35793557	T	A	367.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.306;SOR=1.022;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:59:0|1:124436345_G_A:59,0,148:124436345
chr3	124438329	rs4234221	C	T	2190.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=1.63;SOR=0.687;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:1065,0,871
chr3	124438439	rs332512	T	C	903.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=-3.810e-01;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:518,0,220
chr3	124449148	rs2279197	G	A	129.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=0.253;SOR=0.412;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:72:72,0,75
chr3	124449209	rs2279198	A	G	2068.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.79;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.37;ReadPosRankSum=1.94;SOR=1.708;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:413,0,373
chr3	124449252	rs2279199	T	C	2725.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=43;ExcessHet=3.9794;FS=6.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=0.340;SOR=0.175;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:617,0,676
chr3	124449291	rs1139538	A	G	7606.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=66;ExcessHet=3.0103;FS=0.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=-4.560e-01;SOR=0.575;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:848,0,858
chr3	124449817	rs669736	A	T	188	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:74,0,67
chr3	124450258	rs4678146	T	C	1603.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=-2.660e-01;SOR=0.723;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:99:111,0,433
chr3	124450284	rs9840078	G	T	889.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-5.260e-01;SOR=0.775;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,6:23:99:144,0,487
chr3	124450437	rs141450300	ATCT	A	1423.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.210e-01;DB;DP=27;ExcessHet=6.9897;FS=0.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=1.38;SOR=0.839;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,14:27:99:543,0,611
chr3	124451312	rs10934682	T	G	2749.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DB;DP=58;ExcessHet=6.9897;FS=1.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.074;SOR=0.832;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,30:58:99:703,0,675
chr3	124456742	rs1801019	G	C	4604.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=126;ExcessHet=6.9897;FS=1.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-1.930e-01;SOR=0.800;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,68:126:99:1717,0,1453
chr3	124457272	rs13061561	C	T	184.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=0.842;SOR=1.179;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:77,0,35
chr3	124458816	rs694897	C	G	4698.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DB;DP=50;ExcessHet=3.0103;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=1.56;SOR=1.046;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,35:50:99:956,0,331
chr3	124460895	rs5852426	CT	C	258.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.25;ReadPosRankSum=0.842;SOR=1.402;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:17:81,0,17
chr3	124462808	rs13146	C	T	3074.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.324e+00;DB;DP=91;ExcessHet=6.9897;FS=6.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-1.780e-01;SOR=1.004;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,47:91:99:1084,0,1026
chr3	124485259	rs61761676	G	A	1216.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543e+00;DB;DP=101;ExcessHet=3.0103;FS=0.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.217;SOR=0.796;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,49:101:99:1225,0,1375
chr3	124485297	.	G	T	629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.809e+00;DP=50;ExcessHet=3.0103;FS=3.101;MQ=60.00;MQRankSum=0.00;QD=12.59;ReadPosRankSum=0.078;SOR=0.299;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:638,0,784
chr3	124487849	rs2291082	A	G	1044.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948e+00;DB;DP=19;ExcessHet=6.9897;FS=3.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=0.232;SOR=0.332;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,14:19:99:388,0,145
chr3	124515308	rs1803825	A	G	11601.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462e+00;DB;DP=387;ExcessHet=6.9897;FS=1.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=0.842;SOR=0.542;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:206,181:387:99:4179,0,4933
chr3	124515498	rs2291087	T	C	1802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=148;ExcessHet=3.0103;FS=5.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=2.17;SOR=0.371;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,67:148:99:1811,0,2245
chr3	124515646	rs2291090	A	C	1034.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-1.573e+00;SOR=0.744;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1043,0,798
chr3	124560505	rs61760570	C	A	707.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.746e+00;DB;DP=62;ExcessHet=3.0103;FS=1.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=0.070;SOR=0.945;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,32:62:99:716,0,834
chr3	124567638	rs3836317	AT	A	195.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.051;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.349;SOR=0.593;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:152,15,0
chr3	124592139	rs1017814	G	C	95.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:104,0,102
chr3	124605531	rs6438860	C	G	150.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.29;SOR=1.609;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	124605736	rs6438861	T	C	1077.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.84;DB;DP=13;ExcessHet=3.9794;FS=0.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=1.27;SOR=0.892;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:393,39,0
chr3	124606509	rs61760562	G	A	3109.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DB;DP=254;ExcessHet=3.0103;FS=0.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=0.749;SOR=0.610;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,131:254:99:3118,0,2872
chr3	124627024	rs1127233	T	G	2498.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=55;ExcessHet=6.9897;FS=0.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-3.200e-01;SOR=0.631;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,31:55:99:845,0,560
chr3	124631731	rs6764195	C	T	247.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.431;SOR=0.293;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:76,0,34
chr3	124635444	rs4679165	A	G	531.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.00;SOR=0.885;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:175,0,391
chr3	124635512	rs4679166	T	C	317.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=0.967;SOR=2.303;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:205,0,22
chr3	124638882	rs116715912	C	T	244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.441e+00;DB;DP=21;ExcessHet=3.0103;FS=2.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.23;SOR=1.802;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:253,0,424
chr3	124642586	rs3841931	CT	C	845.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.236e+00;DB;DP=49;ExcessHet=3.0103;FS=2.587;MQ=59.74;MQRankSum=-9.390e-01;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-6.600e-01;SOR=1.164;VQSLOD=1.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,25:49:99:854,0,804
chr3	124646234	rs6770196	A	C	318.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=-8.160e-01;SOR=0.346;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr3	124646594	rs4679392	A	G	6097.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=132;ExcessHet=1.5490;FS=5.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=-3.890e-01;SOR=0.433;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3990,396,0
chr3	124646705	rs10630030	A	AAAG	11301.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=1.97;SOR=1.093;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3690,247,0
chr3	124653710	rs10934701	A	G	5612.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=1.624;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1740,159,0
chr3	124653868	rs10934702	C	T	1024.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=4.332;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:287,24,0
chr3	124690294	rs11438219	C	CT	141.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=14.13;ReadPosRankSum=0.126;SOR=2.584;VQSLOD=4.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:19:79,0,19
chr3	124692689	rs2270778	C	T	8688.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=-1.134e+00;SOR=0.723;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,56:119:99:1327,0,1493
chr3	124692785	rs2270779	C	T	3689.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.460e-01;DB;DP=46;ExcessHet=3.0103;FS=2.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=0.297;SOR=0.446;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:537,0,571
chr3	124696807	rs61603696	CA	C	2024.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=92;ExcessHet=3.9794;FS=1.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.765;SOR=0.848;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:55,37:92:99:901,0,1457
chr3	124709994	rs11430281	C	CT	31.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.82;ReadPosRankSum=-6.740e-01;SOR=0.105;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:18:39,0,18
chr3	124716889	rs7653012	T	C	436.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=0.381;SOR=0.473;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:91:244,0,91
chr3	124728394	rs6438867	T	C	499.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=0.00;SOR=1.508;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:218,18,0
chr3	124728472	rs6438868	C	G	1194.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.052;DB;DP=18;ExcessHet=3.9794;FS=1.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=0.550;SOR=0.429;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:665,54,0
chr3	124728626	rs6438869	A	G	3544.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.247e+00;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=0.402;SOR=0.661;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1833,174,0
chr3	124729097	rs6771519	G	T	319.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.83;ReadPosRankSum=0.210;SOR=0.859;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:124729097_G_T:135,9,0:124729097
chr3	124729102	rs28503954	G	C	284.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:124729097_G_T:135,9,0:124729097
chr3	124729193	rs6784454	T	G	1480.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.53;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=-1.433e+00;SOR=1.010;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:964,69,0
chr3	124731485	rs10804567	C	G	10015.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=0.713;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3989,381,0
chr3	124732618	rs6790837	A	G	3913.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=0.4576;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=33.73;SOR=0.728;VQSLOD=4.54;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3930,348,0
chr3	124732842	rs6438871	C	A	2629.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.25;SOR=3.167;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1336,111,0
chr3	124732976	rs6438872	G	T	171.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.32;SOR=3.611;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr3	124733494	rs6769860	G	T	2070.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.93;ReadPosRankSum=0.414;SOR=4.255;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:649,48,0
chr3	124733649	rs6438873	T	G	6942.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=0.946;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3110,294,0
chr3	124738107	rs59232004	C	T	3078.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.660e-01;DB;DP=95;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.40;ReadPosRankSum=0.547;SOR=0.693;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,94:95:99:3095,244,0
chr3	124739892	rs6438874	G	A	3728.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=1.104;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3745,355,0
chr3	124746049	rs2981546	A	G	1689.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=0.960;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1706,171,0
chr3	124746182	rs2333041	C	A	1806.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=1.061;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1823,163,0
chr3	124746347	rs4404487	T	C	5576.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=1.242;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2101,206,0
chr3	124748226	rs2860440	G	A	1872.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.20;SOR=1.057;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1889,186,0
chr3	124809965	rs1828684	C	T	366.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.51;SOR=4.615;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr3	124810697	rs2788466	G	A	675.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=4.407;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:253,21,0
chr3	124837684	rs621383	T	C	5718.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=1.148;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1737,162,0
chr3	124839470	rs863642	G	A	30660.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=358;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=0.906;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,358:358:99:10757,1072,0
chr3	124854425	rs702048	T	C	4217.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.15;SOR=2.514;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1177,99,0
chr3	124854833	rs640717	A	G	3390.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=2.078;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1329,129,0
chr3	124870413	rs596950	A	G	168.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-3.120e-01;SOR=0.368;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:177,0,193
chr3	124870432	rs112527069	GA	G	141.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.13;ReadPosRankSum=-3.030e-01;SOR=0.307;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:124870432_GA_G:150,0,357:124870432
chr3	124870434	rs55907992	A	G	141.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.13;ReadPosRankSum=-3.030e-01;SOR=0.307;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:124870432_GA_G:150,0,357:124870432
chr3	124896861	rs545103	C	G	5327.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.40;SOR=3.105;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1499,123,0
chr3	124911288	rs702043	T	C	541.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.30;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=-4.370e-01;SOR=0.324;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:375,27,0
chr3	124930044	rs673881	A	G	710.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.061e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=-1.290e-01;SOR=0.399;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:532,45,0
chr3	124930408	rs686088	A	G	1248.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.024e+00;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.87;ReadPosRankSum=-5.930e-01;SOR=3.500;VQSLOD=17.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:822,60,0
chr3	124951171	.	CTT	C,CT	2909.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.100e-01;DP=46;ExcessHet=3.0103;FS=2.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.72;ReadPosRankSum=0.612;SOR=0.906;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,8,35:46:93:1047,765,786,201,0,93
chr3	124951821	rs1053738	C	T	4983.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=1.032;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2486,227,0
chr3	124953320	rs7619480	A	T	406.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=4.977;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
chr3	124998098	rs10665336	C	CAAA	2716.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.301e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.35;ReadPosRankSum=1.58;SOR=0.571;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,11:13:19:442,0,19
chr3	125006520	rs1869673	T	C	69.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.67;SOR=2.303;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	125286561	.	G	A	200.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625e+00;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.21;ReadPosRankSum=1.43;SOR=0.859;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:209,0,178
chr3	125441515	rs2976780	T	G	277.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.16;ReadPosRankSum=-3.190e-01;SOR=0.495;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:217,24,0
chr3	125443454	rs9289258	A	G	1103.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.066;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=51.06;MQRankSum=-9.790e-01;NEGATIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-1.830e+00;SOR=0.788;VQSLOD=-3.126e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr3	125453151	rs2971276	A	C	2590.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.403;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.27;ReadPosRankSum=0.403;SOR=0.818;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1091,93,0
chr3	125454157	.	G	T	262.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.14;ReadPosRankSum=-9.670e-01;SOR=2.093;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:23:271,0,23
chr3	125465897	rs148578178	G	T	192.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.962e+00;DB;DP=13;ExcessHet=3.9794;FS=5.593;MQ=42.69;MQRankSum=-5.590e-01;QD=6.62;ReadPosRankSum=0.269;SOR=0.033;VQSLOD=-2.717e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:124,0,282
chr3	125466094	rs56197323	A	G	1683.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813e+00;DB;DP=53;ExcessHet=3.9794;FS=6.030;MQ=54.36;MQRankSum=-4.198e+00;NEGATIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-2.950e-01;SOR=0.324;VQSLOD=-1.904e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,29:53:99:0|1:125466094_A_G:1136,0,1036:125466094
chr3	125466112	rs113917780	C	G	1785.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DB;DP=59;ExcessHet=3.9794;FS=13.243;MQ=55.77;MQRankSum=-5.014e+00;NEGATIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.950;SOR=0.207;VQSLOD=-2.914e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,32:59:99:0|1:125466094_A_G:1185,0,1150:125466094
chr3	125466141	rs143917588	A	C	1772.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.320e-01;DB;DP=75;ExcessHet=3.9794;FS=8.624;MQ=57.46;MQRankSum=-6.672e+00;QD=10.07;ReadPosRankSum=1.11;SOR=0.465;VQSLOD=-3.432e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,32:75:99:0|1:125466141_A_C:1199,0,1941:125466141
chr3	125466142	rs200994846	C	G	1772.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DB;DP=75;ExcessHet=3.9794;FS=8.568;MQ=57.49;MQRankSum=-6.672e+00;QD=9.96;ReadPosRankSum=1.24;SOR=0.469;VQSLOD=-3.476e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,32:75:99:0|1:125466141_A_C:1199,0,1941:125466141
chr3	125466215	rs111854760	C	T	1362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.480e-01;DB;DP=133;ExcessHet=3.9794;FS=13.888;MQ=56.83;MQRankSum=-3.053e+00;NEGATIVE_TRAIN_SITE;QD=5.01;ReadPosRankSum=2.25;SOR=1.016;VQSLOD=-3.237e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:96,37:133:99:0|1:125466215_C_T:1206,0,4166:125466215
chr3	125466222	rs112836637	T	C	1196.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=131;ExcessHet=3.9794;FS=11.470;MQ=56.45;MQRankSum=-2.881e+00;NEGATIVE_TRAIN_SITE;QD=4.46;ReadPosRankSum=3.70;SOR=1.034;VQSLOD=-3.573e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:99,32:131:99:0|1:125466215_C_T:1037,0,4433:125466215
chr3	125466240	.	G	C	1044.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DP=134;ExcessHet=3.9794;FS=7.695;MQ=54.94;MQRankSum=-3.578e+00;NEGATIVE_TRAIN_SITE;QD=3.87;ReadPosRankSum=1.24;SOR=1.283;VQSLOD=-2.823e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:103,31:134:99:0|1:125466215_C_T:1023,0,4429:125466215
chr3	125641394	rs13315434	T	G	1362.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.270e-01;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=59.51;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=-9.630e-01;SOR=0.628;VQSLOD=2.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:786,72,0
chr3	125648165	rs9826071	T	C	67.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.55;SOR=2.303;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	125648209	rs3187686	C	T	251.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=55.48;POSITIVE_TRAIN_SITE;QD=31.42;SOR=1.863;VQSLOD=4.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:136,12,0
chr3	125648283	rs3811679	A	G	263.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=56.51;POSITIVE_TRAIN_SITE;QD=26.35;SOR=0.693;VQSLOD=2.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:143,15,0
chr3	125648343	rs3187711	G	A	121.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=3;ExcessHet=1.5490;FS=3.680;MQ=58.46;MQRankSum=-3.190e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=1.15;SOR=1.108;VQSLOD=-6.129e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr3	125649192	rs7627467	T	C	38.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=19.00;SOR=0.693;VQSLOD=14.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	125649243	rs7615926	G	C	110.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.51;SOR=1.179;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr3	125649288	rs7616019	G	A	284.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.41;ReadPosRankSum=-1.645e+00;SOR=1.609;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:125649288_G_A:225,15,0:125649288
chr3	125649294	rs7627571	T	C	315.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=58.88;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=31.58;ReadPosRankSum=-6.740e-01;SOR=0.976;VQSLOD=-6.850e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:125649288_G_A:225,15,0:125649288
chr3	125649354	rs7616044	G	C	413.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.518;DB;DP=10;ExcessHet=1.5490;FS=4.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.00;ReadPosRankSum=-8.220e-01;SOR=1.965;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:309,30,0
chr3	125649403	rs7615952	C	A	701.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.440;DB;DP=16;ExcessHet=1.5490;FS=2.926;MQ=57.95;MQRankSum=0.463;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=0.701;SOR=1.445;VQSLOD=0.083;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:559,48,0
chr3	125649499	rs7618399	G	C	1011.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=56.71;MQRankSum=0.753;NEGATIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.705;SOR=0.693;VQSLOD=-2.165e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:24:66:675,66,0
chr3	125649573	rs7629977	T	G	552.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.13;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.65;ReadPosRankSum=1.64;SOR=0.941;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:334,24,0
chr3	125649621	rs7618335	C	T	519.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.660e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.62;ReadPosRankSum=1.07;SOR=1.739;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr3	125650439	rs35696724	T	C	393.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.358e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=55.38;MQRankSum=0.293;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-1.539e+00;SOR=0.495;VQSLOD=-1.669e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:191,21,0
chr3	125650675	rs34898519	T	TCC	257.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=58.19;MQRankSum=-8.420e-01;QD=19.80;ReadPosRankSum=-3.030e-01;SOR=0.859;VQSLOD=0.655;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr3	125651602	rs34411283	C	CT	392.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.765;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.75;MQRankSum=0.00;QD=21.79;ReadPosRankSum=0.549;SOR=0.368;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:242,27,0
chr3	125653291	rs7633797	A	G	689.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.998;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.72;MQRankSum=0.812;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=0.674;SOR=0.595;VQSLOD=1.35;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:125653283_C_T:322,30,0:125653283
chr3	125701099	rs2270986	T	C	5361.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.830e-01;DB;DP=134;ExcessHet=1.5490;FS=5.031;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=1.31;SOR=0.443;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,133:134:99:3978,361,0
chr3	125701948	rs12496921	C	G	300.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=1.18;SOR=1.179;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr3	125725268	rs111477552	TAACA	T	3060.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=44;ExcessHet=1.5490;FS=0.866;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=-5.600e-01;SOR=0.850;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1971,133,0
chr3	125725559	rs1044215	C	G	2350.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.498;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=-3.040e-01;SOR=0.630;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1638,144,0
chr3	125726048	rs2279819	G	C	3883.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.30;DB;DP=44;ExcessHet=3.9794;FS=17.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=-5.900e-01;SOR=1.529;VQSLOD=12.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1576,132,0
chr3	125731161	rs1566715	C	T	181.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=0.524;SOR=1.609;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	125731845	rs66532274	G	A	1311.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=-9.770e-01;SOR=0.979;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:858,69,0
chr3	125734308	rs2279821	G	A	2090.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.066e+00;DB;DP=50;ExcessHet=1.5490;FS=1.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=0.399;SOR=0.945;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1636,150,0
chr3	125741465	rs12486459	T	G	297.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=59.53;MQRankSum=-7.650e-01;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=0.464;SOR=1.329;VQSLOD=0.968;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:185,15,0
chr3	125752787	rs34347953	C	CA	712.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=2.833;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr3	125770141	rs4076727	C	T	1323.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.294;DB;DP=23;ExcessHet=1.5490;FS=1.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=-1.110e+00;SOR=0.446;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:775,69,0
chr3	125775061	rs78137633	C	T	521.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.090e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=-1.433e+00;SOR=0.631;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr3	125775228	rs7613944	T	C	7175.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=1.054;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2378,228,0
chr3	125775428	rs6438964	G	A	2096.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=2.187;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1089,99,0
chr3	125786695	rs4308225	G	A	5383.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=1.609;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2699,246,0
chr3	125786760	rs4308226	G	A	6855.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=1.117;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3477,338,0
chr3	125786879	rs4234270	T	C	12928.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=0.828;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4618,467,0
chr3	125787126	rs6438966	C	T	510.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.962e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=0.821;SOR=0.527;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr3	125822946	rs4646759	G	C	2064.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=-1.535e+00;SOR=0.791;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1249,108,0
chr3	125823343	rs4646758	A	G	1774.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.026;DB;DP=19;ExcessHet=3.0103;FS=4.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=-5.680e-01;SOR=0.164;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:773,57,0
chr3	125823355	rs4646757	G	C	2066.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.065;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=1.35;SOR=0.619;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:870,72,0
chr3	125824256	rs4646756	T	C	353.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=-3.190e-01;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:152,12,0
chr3	125826059	rs1127717	T	C	5225.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.909;DB;DP=107;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=1.74;SOR=0.765;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3835,321,0
chr3	125826214	rs2276729	G	A	577.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.914;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=-1.133e+00;SOR=1.270;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:456,33,0
chr3	125826243	rs2276727	G	A	181.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=3.611;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:196,15,0
chr3	125826914	rs3772431	T	C	1608.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.64;DB;DP=15;ExcessHet=3.0103;FS=11.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=0.498;SOR=3.383;VQSLOD=12.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:627,45,0
chr3	125848847	rs3821458	G	C	325.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-5.660e-01;SOR=0.712;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:90:90,0,283
chr3	125848899	rs2365003	G	A	846.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e-01;DB;DP=24;ExcessHet=3.9794;FS=1.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.13;SOR=0.437;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,9:24:99:0|1:125848899_G_A:302,0,652:125848899
chr3	125848911	rs1868125	A	G	977.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.803;DB;DP=30;ExcessHet=3.9794;FS=2.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=1.25;SOR=0.424;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,12:30:99:0|1:125848899_G_A:381,0,743:125848899
chr3	125848945	rs2365002	T	C	1014.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DB;DP=57;ExcessHet=3.9794;FS=2.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=1.64;SOR=1.009;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,21:57:99:487,0,903
chr3	125849031	rs873696	C	T	2083.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=97;ExcessHet=3.9794;FS=3.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=1.40;SOR=0.945;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,40:97:99:978,0,1484
chr3	125849238	rs2002287	G	A	1869.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.670e-01;DB;DP=73;ExcessHet=3.9794;FS=2.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.896;SOR=0.473;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,40:73:99:1092,0,925
chr3	125849416	rs1317682	C	T	253.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=1.04;SOR=0.307;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:57:104,0,57
chr3	125849946	rs3821452	C	A	103.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=-9.670e-01;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:68,0,33
chr3	125850101	rs4646733	C	T	1237.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045e+00;DB;DP=38;ExcessHet=3.9794;FS=1.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=-2.490e-01;SOR=0.395;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,20:38:99:0|1:125850101_C_T:786,0,958:125850101
chr3	125850102	rs4646732	A	G	1237.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.57;DB;DP=38;ExcessHet=3.9794;FS=1.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=-2.780e-01;SOR=0.395;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,20:38:99:0|1:125850101_C_T:786,0,958:125850101
chr3	125850169	rs3821451	T	C	1191.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838e+00;DB;DP=77;ExcessHet=3.9794;FS=8.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=1.74;SOR=0.297;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,35:77:99:714,0,1176
chr3	125850193	rs3816366	A	G	1482.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077e+00;DB;DP=91;ExcessHet=3.9794;FS=3.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.37;ReadPosRankSum=1.48;SOR=0.455;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,43:91:99:938,0,1239
chr3	125850381	rs2305228	A	G	1849.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=73;ExcessHet=3.9794;FS=0.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.958;SOR=0.599;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,37:73:99:892,0,878
chr3	125850496	rs2305226	C	T	266.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-3.660e-01;SOR=0.446;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:61:0|1:125850496_C_T:61,0,371:125850496
chr3	125850505	rs2305225	G	A	204.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=0.524;SOR=0.340;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,1:5:27:0|1:125850496_C_T:27,0,374:125850496
chr3	125854409	rs2276724	T	C	2449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DB;DP=274;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=0.022;SOR=0.681;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:164,110:274:99:2458,0,3991
chr3	125855599	rs2305229	G	T	1006.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876e+00;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-1.188e+00;SOR=0.633;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1015,0,996
chr3	125855975	rs6772231	C	A	194.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=-1.047e+00;SOR=0.569;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:203,0,268
chr3	125855983	rs142314891	A	ACT	138.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-8.160e-01;SOR=0.412;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:147,0,237
chr3	125856695	rs2305230	C	A	1010.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120e+00;DB;DP=87;ExcessHet=3.0103;FS=2.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-3.100e-01;SOR=0.432;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,43:87:99:1019,0,1131
chr3	125856916	rs6799991	A	G	924.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=-5.550e-01;SOR=1.127;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:178,0,225
chr3	125865766	rs2886059	C	A	764.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.023;DB;DP=60;ExcessHet=3.0103;FS=13.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-5.600e-01;SOR=2.526;VQSLOD=12.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,26:60:99:773,0,957
chr3	125874388	rs2276731	C	T	3160.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502e+00;DB;DP=37;ExcessHet=3.0103;FS=2.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=-8.820e-01;SOR=0.394;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:485,0,564
chr3	126062304	rs70940816	G	GGAAGGCAC	112.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=0.842;SOR=1.022;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:99:120,0,177
chr3	126070625	rs13074621	A	C	220.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=0.547;SOR=0.631;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:229,0,138
chr3	126115156	rs55746055	G	T	551.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.46;ReadPosRankSum=-5.240e-01;SOR=3.383;VQSLOD=18.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	126132802	rs11336108	AG	A	77.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=-1.150e+00;SOR=0.446;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:21:86,0,21
chr3	126132880	rs4679240	G	A	287.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.038;SOR=1.179;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:296,0,238
chr3	126133239	rs6775131	C	T	1109.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963e+00;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.76;ReadPosRankSum=0.590;SOR=0.635;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,22:54:99:447,0,893
chr3	126135070	rs143567171	C	CCGCGTCCCCGGCCTCAGGTCCG	1828.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=78;ExcessHet=3.0103;FS=8.757;MQ=60.00;MQRankSum=0.00;QD=23.44;ReadPosRankSum=-1.675e+00;SOR=2.856;VQSLOD=2.63;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,33:78:99:1837,0,2936
chr3	126135365	rs6439010	G	T	3767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.209e+00;DB;DP=265;ExcessHet=3.0103;FS=1.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-5.000e-03;SOR=0.618;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,142:265:99:3776,0,3200
chr3	126137078	rs7634065	G	C	317.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=4.407;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:332,24,0
chr3	126137558	rs4679242	C	T	988.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.600e-02;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-7.190e-01;SOR=0.709;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:997,0,924
chr3	126138778	rs2271630	T	C	4484.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=0.892;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1495,156,0
chr3	126138889	rs1877967	G	T	579.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.417e+00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=-3.410e-01;SOR=0.648;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:588,0,552
chr3	126142496	rs13064828	T	C	1242.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.164;DB;DP=71;ExcessHet=3.0103;FS=5.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.50;ReadPosRankSum=0.136;SOR=0.258;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,44:71:99:1251,0,743
chr3	126151797	rs35133442	T	C	195.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-6.870e-01;SOR=0.399;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:204,0,333
chr3	126153361	rs13099144	T	C	42.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.29;ReadPosRankSum=-9.210e-01;SOR=0.020;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:51:51,0,188
chr3	126154201	rs12631841	C	T	173.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=0.398;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:182,0,177
chr3	126154634	rs3817526	G	A	244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=-1.120e-01;SOR=0.582;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:253,0,288
chr3	126157464	rs11444454	T	TG	1500.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DB;DP=36;ExcessHet=3.9794;FS=3.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.31;ReadPosRankSum=-2.970e-01;SOR=0.313;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,23:36:99:738,0,372
chr3	126158622	rs1799404	A	C	1996.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.320e-01;DB;DP=91;ExcessHet=3.9794;FS=3.273;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.716;SOR=0.495;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,41:91:99:926,0,1224
chr3	126158929	rs1627637	G	C	696.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=5.670;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:221,15,0
chr3	126160529	rs4679244	A	G	482.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.160e-01;DB;DP=11;ExcessHet=3.9794;FS=2.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=0.138;SOR=2.187;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:92:268,0,92
chr3	126160884	rs375720300	CATTA	C	5046.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=44;ExcessHet=3.9794;FS=0.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=0.369;SOR=0.786;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,29:44:99:1173,0,822
chr3	126169091	rs777493	T	C	5049.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.250e-01;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=1.60;SOR=0.669;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1455,141,0
chr3	126169230	rs777494	C	T	8487.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=94;ExcessHet=3.0103;FS=0.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.51;ReadPosRankSum=0.130;SOR=0.618;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2849,281,0
chr3	126169472	rs777495	T	C	3520.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.92;SOR=2.429;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1019,81,0
chr3	126178390	rs1043803	A	C	920.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.920e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.61;ReadPosRankSum=0.464;SOR=1.387;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:57:57,0,222
chr3	126180121	rs3231	C	T	427.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.55;ReadPosRankSum=-1.282e+00;SOR=2.303;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:71,0,71
chr3	126181071	rs6775965	A	C	872.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=59;ExcessHet=3.0103;FS=3.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.872;SOR=1.274;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,29:59:99:881,0,780
chr3	126184941	rs1799389	C	T	1588.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=15;ExcessHet=3.9794;FS=2.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=1.30;SOR=0.305;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:226,0,194
chr3	126185238	rs1687463	C	T	1761.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.321e+00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.573;SOR=0.815;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,7:28:99:176,0,711
chr3	126189919	rs777499	A	G	3508.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=52;ExcessHet=3.9794;FS=4.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=1.10;SOR=1.126;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,16:52:99:411,0,989
chr3	126190604	rs777501	T	A	1051.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=-7.350e-01;SOR=1.287;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,5:15:99:161,0,354
chr3	126194076	rs812367	T	C	13099.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660e-01;DB;DP=231;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-4.180e-01;SOR=0.656;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,113:231:99:2746,0,3092
chr3	126194357	rs7624748	G	C	11896.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.89;SOR=1.623;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4381,416,0
chr3	126194880	rs114432599	T	C	485.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.12;ReadPosRankSum=0.272;SOR=1.112;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:60:1|0:126194843_G_A:208,0,60:126194843
chr3	126202147	rs79648980	G	A	1693.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=127;ExcessHet=3.0103;FS=1.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-1.338e+00;SOR=0.546;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,67:127:99:1702,0,1438
chr3	126202257	rs1687477	G	A	12059.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=233;ExcessHet=3.9794;FS=1.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.035;SOR=0.719;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,112:233:99:2725,0,2791
chr3	126206767	rs796582	A	G	849.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.62;ReadPosRankSum=0.00;SOR=3.912;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:266,18,0
chr3	126206800	rs812366	C	T	1030.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=0.108;SOR=1.949;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:260,0,212
chr3	126207222	rs777483	A	G	1293.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=27;ExcessHet=3.9794;FS=3.262;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.484;SOR=1.467;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:360,0,479
chr3	126207276	rs777482	C	T	700.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=1.57;SOR=1.781;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:81:259,0,81
chr3	126208249	rs777479	A	C	2376.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=0.078;SOR=0.755;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,12:35:99:382,0,710
chr3	126211479	rs2307882	C	CCTCT	5336.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.243;DB;DP=62;ExcessHet=3.9794;FS=2.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.42;ReadPosRankSum=0.047;SOR=0.484;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,30:62:99:1135,0,1851
chr3	126214747	rs6809379	T	G	3239.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.36;SOR=8.635;VQSLOD=23.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1153,81,0
chr3	126214943	rs62264732	A	G	4144.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=367;ExcessHet=3.0103;FS=3.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-1.708e+00;SOR=0.900;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:195,172:367:99:4153,0,4600
chr3	126215079	rs372654358	GCCCAC	G	1673.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=85;ExcessHet=3.0103;FS=3.057;MQ=60.00;MQRankSum=0.00;QD=19.69;ReadPosRankSum=-1.263e+00;SOR=0.110;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1682,0,2065
chr3	126215130	rs6797423	G	A	2326.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=46;ExcessHet=6.9897;FS=3.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=0.302;SOR=1.654;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:683,0,736
chr3	126216829	rs13098666	T	A	652.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.094e+00;DB;DP=46;ExcessHet=3.0103;FS=2.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-2.960e-01;SOR=0.407;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,29:46:99:661,0,423
chr3	126218167	rs1168595	G	A	898.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DB;DP=65;ExcessHet=3.0103;FS=0.967;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-1.300e-02;SOR=0.953;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,36:65:99:907,0,682
chr3	126218769	rs35907154	T	C	1027.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=17;ExcessHet=6.9897;FS=2.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-3.120e-01;SOR=0.180;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,11:17:99:0|1:126218769_T_C:444,0,362:126218769
chr3	126218788	rs6774768	T	C	1214.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.931;DB;DP=24;ExcessHet=6.9897;FS=1.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=0.123;SOR=0.414;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,14:24:99:0|1:126218769_T_C:524,0,495:126218769
chr3	126219030	rs13072404	T	C	1871.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290e-01;DB;DP=74;ExcessHet=6.9897;FS=10.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=-8.910e-01;SOR=1.344;VQSLOD=18.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,28:74:99:572,0,1105
chr3	126219086	rs13092625	A	G	951.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=-4.420e-01;SOR=0.743;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,7:30:99:137,0,638
chr3	126219973	rs1177565	T	C	4150.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.669e+00;DB;DP=42;ExcessHet=3.0103;FS=3.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.43;ReadPosRankSum=-5.660e-01;SOR=0.304;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1509,126,0
chr3	126220539	rs9844797	A	G	1486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=18;ExcessHet=6.9897;FS=0.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.356;SOR=0.548;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:216,0,330
chr3	126220845	rs7643584	G	A	2302.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=47;ExcessHet=6.9897;FS=0.783;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-1.457e+00;SOR=0.598;VQSLOD=5.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:628,0,771
chr3	126223266	rs1687440	A	G	112.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=2.833;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr3	126225147	rs1799388	T	C	1345.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.380e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=-1.242e+00;SOR=0.555;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:518,51,0
chr3	126226518	rs9784244	C	T	4288.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=51;ExcessHet=3.0103;FS=2.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=0.027;SOR=0.977;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1545,152,0
chr3	126227185	rs16837531	G	A	6479.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.939e+00;DB;DP=89;ExcessHet=3.0103;FS=3.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=-3.350e-01;SOR=0.452;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2681,265,0
chr3	126228410	rs729456	G	A	4637.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.38;DB;DP=82;ExcessHet=3.9794;FS=1.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=0.072;SOR=0.566;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2600,245,0
chr3	126236348	rs1687480	T	C	7977.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=1.374;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2106,204,0
chr3	126247795	rs11717719	C	T	986.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.756;DB;DP=9;ExcessHet=3.9794;FS=1.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=1.90;SOR=1.051;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:279,27,0
chr3	126247848	rs11718493	C	T	1739.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.039e+00;DB;DP=23;ExcessHet=3.9794;FS=0.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.050;SOR=0.599;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:734,68,0
chr3	126268092	rs71150448	A	AC	425.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=0.967;SOR=0.399;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:126268092_A_AC:360,24,0:126268092
chr3	126268098	rs55668869	C	T	429.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.41;ReadPosRankSum=0.967;SOR=0.399;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:126268092_A_AC:360,24,0:126268092
chr3	126268105	rs3732535	C	T	429.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.08;ReadPosRankSum=0.967;SOR=0.399;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:126268092_A_AC:360,24,0:126268092
chr3	126268953	rs869464	T	G	4302.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.761e+00;DB;DP=76;ExcessHet=3.9794;FS=1.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=0.546;SOR=0.850;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2317,228,0
chr3	126270729	.	T	C	531.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DP=28;ExcessHet=3.0103;FS=2.965;MQ=60.00;MQRankSum=0.00;QD=18.97;ReadPosRankSum=0.094;SOR=0.180;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:540,0,356
chr3	126270757	rs13071443	G	T	5815.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=58;ExcessHet=3.0103;FS=7.070;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.50;ReadPosRankSum=-3.590e-01;SOR=2.849;VQSLOD=18.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1919,163,0
chr3	126328101	rs9856833	A	G	6570.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.950e-01;DB;DP=88;ExcessHet=3.0103;FS=2.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-1.940e-01;SOR=0.930;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2582,264,0
chr3	126329910	rs777241	A	G	5236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.10;SOR=1.096;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1832,185,0
chr3	126333991	rs949477	A	G	208.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=3.611;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	126340553	rs3732534	G	A	5519.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.820e-01;DB;DP=54;ExcessHet=3.0103;FS=0.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=-3.010e-01;SOR=0.532;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1787,161,0
chr3	126365127	rs11453652	C	CT	3419.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.10;SOR=2.414;VQSLOD=6.32;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1067,81,0
chr3	126373490	rs777246	C	A	1048.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=6.869;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:41:508,41,0
chr3	126373994	rs3108755	A	G	15001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=0.846;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4236,412,0
chr3	126374264	rs3103564	T	G	2581.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.15;SOR=8.380;VQSLOD=24.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:514,39,0
chr3	126449056	rs2860057	A	G	1111.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.98;SOR=2.215;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:126449056_A_G:315,21,0:126449056
chr3	126449057	rs2218678	C	A	1111.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.95;SOR=2.215;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:126449056_A_G:315,21,0:126449056
chr3	126499473	rs55954409	G	A	1889.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.156e+00;DB;DP=62;ExcessHet=3.9794;FS=2.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-4.500e-01;SOR=0.488;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:672,0,1165
chr3	126633419	rs2303994	C	G	5191.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242e+00;DB;DP=57;ExcessHet=3.0103;FS=4.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=-1.298e+00;SOR=1.116;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1854,171,0
chr3	126634010	rs9683346	G	A	68.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.16;SOR=2.303;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	126644974	rs732462	G	C	1249.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.506e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.49;ReadPosRankSum=0.306;SOR=0.877;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:285,0,275
chr3	126676545	rs56031528	C	T	2043.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=1.32;SOR=0.688;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,30:50:99:849,0,478
chr3	126707376	rs1106863	T	C	1885.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.310e-01;DB;DP=18;ExcessHet=1.5490;FS=5.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.92;ReadPosRankSum=-3.760e-01;SOR=2.422;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:193,0,419
chr3	126708453	rs6773789	T	C	15432.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.000e-03;DB;DP=279;ExcessHet=1.5490;FS=1.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=1.57;SOR=0.846;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,131:279:99:3292,0,3763
chr3	126724151	rs73196539	G	A	1445.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.584e+00;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.877;SOR=0.612;VQSLOD=6.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:744,0,758
chr3	126724881	rs12489348	G	C	5618.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270e+00;DB;DP=156;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.97;ReadPosRankSum=1.15;SOR=0.689;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,77:156:99:1937,0,2163
chr3	126733053	rs11719489	C	T	8750.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.17;DB;DP=340;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-1.730e-01;SOR=0.734;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:187,153:340:99:3763,0,4674
chr3	126739012	rs891762	G	T	2490.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250e+00;DB;DP=119;ExcessHet=3.9794;FS=0.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=0.446;SOR=0.774;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,52:119:99:1369,0,2014
chr3	126739291	rs6439030	T	C	8465.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.655e+00;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=-1.390e+00;SOR=1.533;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,80:81:99:2547,202,0
chr3	126746335	rs78821416	G	A	499.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=1.52;SOR=0.250;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:111,0,280
chr3	126746690	rs9851451	A	G	4709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.766e+00;DB;DP=143;ExcessHet=3.9794;FS=1.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.739;SOR=0.780;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,73:143:99:1894,0,1967
chr3	126746731	rs9833827	T	G	4086.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=100;ExcessHet=3.9794;FS=1.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=2.44;SOR=0.783;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,57:100:99:1740,0,1168
chr3	126748151	rs6789728	T	C	9435.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.50;SOR=1.312;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2527,181,0
chr3	126748688	rs112797556	A	G	4128.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.28;DB;DP=105;ExcessHet=3.9794;FS=5.944;MQ=59.96;MQRankSum=0.00;QD=17.87;ReadPosRankSum=-3.900e-02;SOR=0.223;VQSLOD=5.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,53:105:99:1788,0,1807
chr3	126751478	rs9840115	C	T	2120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=85;ExcessHet=3.9794;FS=7.113;MQ=59.77;MQRankSum=-2.920e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.083;SOR=1.247;VQSLOD=-1.496e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,33:85:99:1012,0,1513
chr3	126751689	rs6439031	G	A	16564.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=1.472;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5596,555,0
chr3	126752969	rs7621885	C	A	267.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.464;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:143,0,112
chr3	126880488	rs7625800	T	C	2437.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=3.126;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:368,30,0
chr3	126916371	rs4679347	T	C	1691.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=6.043;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr3	127105975	.	TA	T	1948.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DP=62;ExcessHet=3.0103;FS=0.815;MQ=59.86;MQRankSum=-2.680e-01;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.361;SOR=0.616;VQSLOD=2.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,16:62:99:304,0,365
chr3	127106144	rs9856643	C	A	7354.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=132;ExcessHet=3.9794;FS=0.471;MQ=59.80;MQRankSum=0.577;POSITIVE_TRAIN_SITE;QD=22.22;ReadPosRankSum=0.694;SOR=0.757;VQSLOD=1.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,61:132:99:1845,0,2164
chr3	127106259	rs9856935	C	T	9944.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336e+00;DB;DP=166;ExcessHet=3.9794;FS=0.586;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=1.43;SOR=0.639;VQSLOD=6.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,100:166:99:2618,0,1748
chr3	127107213	rs11337613	AT	A	337.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=16;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=0.380;SOR=2.670;VQSLOD=6.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:346,0,149
chr3	127292788	rs4974445	T	C	1544.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.81;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.09;ReadPosRankSum=-6.590e-01;SOR=1.877;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:226,0,213
chr3	127323830	rs893293	C	T	11751.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e+00;DB;DP=157;ExcessHet=3.0103;FS=0.725;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=-1.530e-01;SOR=0.616;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,80:157:99:1872,0,1899
chr3	127329929	rs17497006	G	A	333.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=26;ExcessHet=3.0103;FS=3.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-2.600e-02;SOR=2.030;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:342,0,449
chr3	127336934	rs782427	A	G	18843.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=0.855;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5110,489,0
chr3	127337742	rs17497159	G	A	3311.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.003e+00;DB;DP=92;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=1.53;SOR=0.603;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1548,0,1561
chr3	127339476	.	G	A	2147.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.060e-01;DP=149;ExcessHet=3.0103;FS=3.292;MQ=60.00;MQRankSum=0.00;QD=14.41;ReadPosRankSum=0.556;SOR=0.436;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,88:149:99:2156,0,1446
chr3	127339706	rs150230243	A	G	2295.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DB;DP=168;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.66;ReadPosRankSum=0.076;SOR=0.703;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,88:168:99:2304,0,1918
chr3	127348093	.	C	CCGCCGCTGCTTT	360.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.473;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.02;ReadPosRankSum=2.21;SOR=0.859;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,9:12:99:369,0,349
chr3	127387446	rs116213104	C	T	715.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.632;DB;DP=40;ExcessHet=3.0103;FS=1.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=0.221;SOR=0.495;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:724,0,447
chr3	127390525	rs41266485	C	T	1743.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DB;DP=71;ExcessHet=3.9794;FS=0.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.73;SOR=0.616;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,32:71:99:781,0,1212
chr3	127391018	rs813633	A	G	11837.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=2.722;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4009,321,0
chr3	127391378	rs1056235	G	A	1065.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-01;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.890;SOR=0.867;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:662,0,504
chr3	127394820	rs35703629	C	T	2166.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.860e-01;DB;DP=82;ExcessHet=3.9794;FS=4.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-3.580e-01;SOR=0.943;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,39:82:99:962,0,1122
chr3	127396220	rs1658037	T	C	10141.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.02;SOR=0.914;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3447,296,0
chr3	127398176	rs782456	A	G	1011.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=6.666;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:222,18,0
chr3	127410915	rs814131	C	T	1306.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.235e+00;DB;DP=22;ExcessHet=3.9794;FS=1.930;MQ=59.05;MQRankSum=1.63;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=0.803;SOR=0.307;VQSLOD=0.890;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,9:22:99:263,0,433
chr3	127410959	rs814130	G	*,T	954.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.16;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.07;SOR=2.995;VQSLOD=-1.458e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,13,8:21:96:1208,189,96,495,0,415
chr3	127429567	rs1010174	C	G	8372.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=117;ExcessHet=3.9794;FS=2.389;MQ=59.99;MQRankSum=0.926;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=0.450;SOR=0.561;VQSLOD=2.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:62,55:117:99:1480,0,1709
chr3	127429741	rs2276744	T	C	2129.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.784e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=0.405;SOR=0.680;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:330,0,356
chr3	127434580	rs627498	G	A	2978.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370e-01;DB;DP=118;ExcessHet=3.9794;FS=4.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-1.310e-01;SOR=0.893;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,62:118:99:1603,0,1469
chr3	127434856	rs477554	C	T	623.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.415;SOR=0.509;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:330,0,504
chr3	127440083	rs13088071	A	C	2575.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.647e+00;DB;DP=55;ExcessHet=3.9794;FS=7.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=1.55;SOR=0.164;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,19:55:99:491,0,1281
chr3	127440142	rs555183	A	G	978.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.41;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=1.00;SOR=1.038;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:519,0,399
chr3	127775788	rs9847934	T	A	233.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.71;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:194,15,0
chr3	127775873	.	A	G	36.24	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=30.66;SOR=1.609;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:127775873_A_G:45,3,0:127775873
chr3	127775897	.	T	C	36.24	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=32.12;SOR=1.609;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:127775873_A_G:45,3,0:127775873
chr3	127783442	rs6764003	A	G	529.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.300e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=2.64;SOR=0.330;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:264,21,0
chr3	127784262	rs2075402	C	T	309.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=0.566;SOR=0.941;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	127819151	rs4857867	T	C	124.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=1.609;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	127965570	rs10512698	T	G	410.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DB;DP=17;ExcessHet=3.9794;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=1.06;SOR=0.128;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:273,0,233
chr3	127965923	rs149992198	G	A	446.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DB;DP=63;ExcessHet=3.0103;FS=1.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=0.858;SOR=0.892;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,22:63:99:455,0,976
chr3	127983495	rs2811544	T	C	17179.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=0.999;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,187:187:99:5663,561,0
chr3	127983796	rs2811543	T	G	1680.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=3.912;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:127983796_T_G:270,18,0:127983796
chr3	127983800	rs2811542	A	C	1645.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=3.797;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:127983796_T_G:270,18,0:127983796
chr3	128060120	.	C	T	3209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.790e-01;DP=267;ExcessHet=3.0103;FS=0.447;MQ=60.00;MQRankSum=0.00;QD=12.02;ReadPosRankSum=-6.830e-01;SOR=0.659;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,131:267:99:3218,0,3400
chr3	128181537	rs2953129	C	T	7221.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=144;ExcessHet=1.5490;FS=2.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.37;ReadPosRankSum=0.965;SOR=0.812;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,73:144:99:1765,0,1656
chr3	128182074	rs2981026	G	A	6898.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=145;ExcessHet=1.5490;FS=1.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=-4.040e-01;SOR=0.806;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,71:145:99:2075,0,2003
chr3	128200806	rs11708606	G	A	1594.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.622;DB;DP=137;ExcessHet=3.0103;FS=3.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.235;SOR=0.475;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,67:137:99:1603,0,1704
chr3	128201013	rs11717152	A	C	466.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=4.977;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:483,33,0
chr3	128203035	rs2713602	A	G	1800.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=32;ExcessHet=3.9794;FS=1.692;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-1.780e-01;SOR=0.895;VQSLOD=6.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1032,96,0
chr3	128205860	rs1573858	G	C	2084.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.940e-01;DB;DP=37;ExcessHet=3.9794;FS=2.651;MQ=60.00;MQRankSum=0.00;QD=17.67;ReadPosRankSum=0.149;SOR=0.985;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1097,110,0
chr3	128292062	rs200346912	CT	C	42.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=56;ExcessHet=3.0103;FS=2.966;MQ=59.93;MQRankSum=0.00;QD=0.76;ReadPosRankSum=0.297;SOR=1.061;VQSLOD=4.96;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,9:56:51:51,0,997
chr3	128292213	rs2734046	A	G	7674.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.298e+00;DB;DP=118;ExcessHet=3.9794;FS=3.028;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=0.626;SOR=0.543;VQSLOD=7.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3898,354,0
chr3	128341475	rs6414311	C	T	717.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=8;ExcessHet=3.0103;FS=4.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.21;ReadPosRankSum=0.414;SOR=2.935;VQSLOD=19.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:325,24,0
chr3	128356636	rs150096055	G	A	168.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.990e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-3.120e-01;SOR=0.446;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:177,0,266
chr3	128363332	rs2811497	C	T	533.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=1.24;SOR=0.527;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:25:25,0,159
chr3	128580574	rs789248	T	C	6515.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=144;ExcessHet=1.5490;FS=7.240;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=0.251;SOR=1.099;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,60:144:99:1581,0,2081
chr3	128581001	rs11921456	A	T	191.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-7.890e-01;SOR=1.609;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:200,0,244
chr3	128584040	rs72990946	C	A	2230.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.711e+00;DB;DP=151;ExcessHet=3.0103;FS=2.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=-1.150e+00;SOR=0.495;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,79:151:99:2239,0,2206
chr3	128584270	rs9842450	T	A	1561.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.257e+00;DB;DP=131;ExcessHet=3.0103;FS=6.135;MQ=37.95;MQRankSum=-1.401e+00;QD=11.92;ReadPosRankSum=0.596;SOR=0.336;VQSLOD=-4.536e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,58:131:99:1570,0,2217
chr3	128598469	rs28384401	CGT	C	573.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=-2.830e-01;SOR=1.931;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:22:185,0,22
chr3	128603150	rs789233	G	T	203.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=1.10;SOR=1.863;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,77
chr3	128612659	rs1680780	G	C	1128.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.980e-01;DB;DP=30;ExcessHet=3.9794;FS=3.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=1.34;SOR=1.402;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:351,0,522
chr3	128614075	rs11379527	G	GA	1256.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.554;DB;DP=83;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=0.306;SOR=0.668;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,29:83:99:594,0,1258
chr3	128614133	rs1683791	C	T	8077.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.420e-01;DB;DP=135;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=-5.780e-01;SOR=0.391;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,134:135:99:4113,365,0
chr3	128614185	rs1680778	A	C	3232.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.098e+00;DB;DP=178;ExcessHet=3.9794;FS=0.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=1.53;SOR=0.737;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,82:178:99:1747,0,2681
chr3	128616325	rs1683804	C	T	4184.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.00;SOR=3.519;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1780,152,0
chr3	128618366	rs371460179	GGT	G	194.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=1.38;SOR=0.430;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:6:29:96,0,29
chr3	128620390	rs1680794	A	G	343.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=0.769;SOR=1.112;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,114
chr3	128622605	rs66903181	G	A	126.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=-6.740e-01;SOR=1.329;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	128622742	rs66521976	G	A	864.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=-4.370e-01;SOR=0.495;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,11:13:37:311,0,37
chr3	128624880	rs1683777	T	G	967.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.58;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.04;SOR=0.644;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:467,0,517
chr3	128625242	rs35020699	C	T	1539.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.74;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=1.68;SOR=0.651;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:576,0,787
chr3	128625318	rs1680788	C	T	460.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.860e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-3.810e-01;SOR=1.501;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:372,0,246
chr3	128626952	rs1683786	T	C	2295.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.620e-01;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.236;SOR=0.672;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,25:58:99:661,0,970
chr3	128627021	rs1683787	A	G	4834.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=147;ExcessHet=3.9794;FS=2.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.649;SOR=0.576;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,71:147:99:1740,0,1925
chr3	128627259	rs13081342	T	C	1328.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=1.70;SOR=0.752;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,15:35:99:475,0,515
chr3	128627753	rs876754	T	C	1559.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.350e-01;DB;DP=36;ExcessHet=3.9794;FS=2.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.079;SOR=1.032;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:615,0,555
chr3	128628393	rs72973231	T	G	113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.55;ReadPosRankSum=-2.610e-01;SOR=0.160;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:122,0,401
chr3	128629332	rs16852190	G	A	468.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.190e-01;DB;DP=9;ExcessHet=3.9794;FS=3.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=1.24;SOR=0.180;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:224,0,101
chr3	128631481	rs9830739	G	A	1940.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DB;DP=170;ExcessHet=3.0103;FS=2.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=-9.730e-01;SOR=0.691;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,78:170:99:1949,0,2333
chr3	128633808	rs789239	T	C	72.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.58;SOR=2.303;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	128653952	rs883602	A	G	1879.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=43;ExcessHet=3.9794;FS=5.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=2.22;SOR=0.243;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,25:43:99:885,0,611
chr3	128663861	rs144966675	C	A	519.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.650e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=-7.240e-01;SOR=0.582;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:528,0,401
chr3	128663955	rs7619327	G	A	545.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=59;ExcessHet=3.0103;FS=3.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-2.555e+00;SOR=0.343;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,20:59:99:554,0,1031
chr3	128663991	rs34092381	G	A	2397.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430e-01;DB;DP=65;ExcessHet=3.9794;FS=1.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.035;SOR=0.557;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,44:65:99:1174,0,528
chr3	128664519	rs138621669	G	A	2084.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.873e+00;DB;DP=158;ExcessHet=3.0103;FS=2.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-2.002e+00;SOR=0.602;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,84:158:99:2093,0,1951
chr3	128664549	rs13059115	G	T	3700.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.005e+00;DB;DP=148;ExcessHet=3.9794;FS=4.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=2.51;SOR=0.874;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,72:148:99:1741,0,1988
chr3	128664654	rs9289336	G	T	1418.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650e+00;DB;DP=100;ExcessHet=3.0103;FS=0.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=0.081;SOR=0.579;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,59:100:99:1427,0,1049
chr3	128695809	rs6779413	G	A	476.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=35;ExcessHet=3.0103;FS=5.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.083;SOR=1.609;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:485,0,341
chr3	128696027	rs6803661	A	G	462.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-1.635e+00;SOR=0.990;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,16:26:99:0|1:128696027_A_G:471,0,206:128696027
chr3	128720487	rs1871951	A	G	2383.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.54;SOR=2.704;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2400,207,0
chr3	128721310	rs6769662	A	C	430.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=1.022;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:447,36,0
chr3	128722958	rs73210697	A	G	926.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230e-01;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.454;SOR=0.776;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:935,0,575
chr3	128755814	rs3732429	T	C	2981.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.52;SOR=1.081;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2998,303,0
chr3	128755953	rs3732430	G	A	640.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=1.828;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:657,63,0
chr3	128755971	rs3732431	G	A	473.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.40;SOR=2.833;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:490,39,0
chr3	128757560	rs2306529	C	G	466.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=2.833;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:483,39,0
chr3	128781258	rs11404362	A	AT	459.61	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.221e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=-5.890e-01;SOR=0.941;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:290,33,0
chr3	128840034	rs9865992	T	C	8681.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=28.49;SOR=7.551;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2979,232,0
chr3	128853622	rs7646403	C	G	10008.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.18;SOR=2.124;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2694,228,0
chr3	128853962	rs12630170	C	T	1654.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.972e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=0.415;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,20:27:99:547,0,189
chr3	128859202	rs10664499	C	CTTAG	5604.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.24;SOR=2.113;VQSLOD=5.88;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1440,96,0
chr3	128864520	rs9842978	C	G	11764.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.37;SOR=1.111;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,80:80:99:1|1:128864520_C_G:3576,247,0:128864520
chr3	128864540	rs9880527	A	G	12696.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=1.044;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,90:90:99:1|1:128864520_C_G:3874,277,0:128864520
chr3	128877521	rs4452346	C	T	1852.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.96;SOR=3.056;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:517,45,0
chr3	128890350	rs4303883	G	A	6126.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.94;SOR=1.067;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2026,200,0
chr3	128979008	rs4927943	C	T	251.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=1.81;SOR=0.184;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:177,0,226
chr3	128979077	.	T	G	48.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.480e-01;DP=34;ExcessHet=3.0103;FS=2.530;MQ=60.00;MQRankSum=0.00;QD=1.42;ReadPosRankSum=1.45;SOR=1.402;VQSLOD=20.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:28,6:34:57:57,0,773
chr3	128992047	rs6762578	G	A	108.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.52;SOR=2.833;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr3	128996444	rs11456105	C	CT	173.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=-1.200e-01;SOR=0.495;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:46:66,0,46
chr3	129020778	rs6765930	A	G	1703.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.365;DB;DP=41;ExcessHet=1.5490;FS=3.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=0.439;SOR=1.148;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1403,123,0
chr3	129099946	rs6764349	A	G	641.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=28.98;SOR=3.126;VQSLOD=4.44;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:129099946_A_G:295,21,0:129099946
chr3	129099953	rs6801682	T	C	616.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=24.99;SOR=2.985;VQSLOD=3.67;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:129099946_A_G:270,18,0:129099946
chr3	129099955	rs6439179	A	G	616.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=32.43;SOR=2.985;VQSLOD=4.95;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:129099946_A_G:270,18,0:129099946
chr3	129100015	rs6439180	T	C	1996.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.95;QD=34.40;SOR=4.664;VQSLOD=4.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:48:1|1:129100015_T_C:709,48,0:129100015
chr3	129100018	rs6439181	G	A	1996.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.95;QD=25.79;SOR=4.712;VQSLOD=4.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:129100015_T_C:709,48,0:129100015
chr3	129100288	rs62266952	A	G	10035.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=58.77;QD=31.07;SOR=1.179;VQSLOD=2.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2966,303,0
chr3	129123327	rs200388634	G	GT	58.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440e-01;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.08;ReadPosRankSum=0.347;SOR=0.637;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:47,7:58:41:41,0,1028
chr3	129147418	rs3796391	G	A	7523.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=172;ExcessHet=6.9897;FS=1.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=-2.390e-01;SOR=0.800;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,71:172:99:1750,0,2623
chr3	129152144	rs140695	T	C	1841.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.596e+00;DB;DP=41;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=0.245;SOR=0.658;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:389,0,609
chr3	129168854	.	CT	C	576.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e-01;DP=45;ExcessHet=6.9897;FS=9.889;MQ=59.90;MQRankSum=0.00;QD=3.30;ReadPosRankSum=1.72;SOR=0.227;VQSLOD=2.10;culprit=FS	GT:AD:DP:GQ:PL	0/1:33,10:45:99:122,0,709
chr3	129174741	rs147682642	TGAG	T	48.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.39;ReadPosRankSum=0.422;SOR=0.527;VQSLOD=5.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,2:11:57:57,0,369
chr3	129185661	rs6805886	C	A	2686.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=2.484;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:832,75,0
chr3	129250035	rs35822883	A	G	63.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:72:72,0,73
chr3	129274390	rs71760166	TA	T	165.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.90;ReadPosRankSum=0.296;SOR=0.593;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,9:28:99:174,0,457
chr3	129276268	rs71333624	C	T	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-5.200e-02;SOR=0.495;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:207,0,294
chr3	129279597	rs2713627	C	T	2582.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.69;SOR=0.917;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:934,95,0
chr3	129281866	rs2713626	G	C	1517.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DB;DP=114;ExcessHet=3.0103;FS=4.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.598;SOR=0.372;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,55:114:99:1526,0,1608
chr3	129281980	rs2713625	C	T	7481.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.69;SOR=0.827;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2559,249,0
chr3	129282137	rs2713624	T	C	279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=2.94;SOR=0.591;VQSLOD=22.26;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,8:24:99:0|1:129282137_T_C:288,0,1046:129282137
chr3	129282138	rs2713623	G	A	279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.792e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=2.85;SOR=0.591;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,8:24:99:0|1:129282137_T_C:288,0,1046:129282137
chr3	129284415	rs2625972	G	T	1202.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118e+00;DB;DP=80;ExcessHet=3.0103;FS=0.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=1.80;SOR=0.573;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,46:80:99:1211,0,933
chr3	129284637	rs2245469	A	G	455.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=34;ExcessHet=3.0103;FS=3.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-1.220e-01;SOR=0.284;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:464,0,651
chr3	129284818	rs2625973	A	C	1717.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DB;DP=149;ExcessHet=3.0103;FS=5.977;MQ=59.98;MQRankSum=-1.035e+00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.080;SOR=0.760;VQSLOD=2.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,71:149:99:1726,0,1862
chr3	129285268	rs71333625	G	A	1571.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.284;DB;DP=172;ExcessHet=3.0103;FS=5.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=1.20;SOR=0.407;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,71:172:99:1580,0,2454
chr3	129286413	rs2245285	G	C	1671.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.421e+00;DB;DP=204;ExcessHet=3.0103;FS=2.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=1.40;SOR=0.532;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,74:204:99:1680,0,3763
chr3	129286531	rs2245281	C	A	2229.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=241;ExcessHet=3.0103;FS=9.327;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=1.37;SOR=0.637;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,99:241:99:2238,0,3541
chr3	129286635	rs2245278	G	A	1504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.667e+00;DB;DP=115;ExcessHet=3.0103;FS=7.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=1.52;SOR=0.287;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,63:115:99:1513,0,1414
chr3	129286823	.	T	G	42.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.51;MQRankSum=1.15;NEGATIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=-1.728e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:27:51,0,27
chr3	129289831	rs2244962	A	G	2838.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DB;DP=285;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=-1.191e+00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-1.500e-02;SOR=0.717;VQSLOD=1.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:168,117:285:99:2847,0,4449
chr3	129290187	rs2285367	T	C	1608.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.377e+00;DB;DP=101;ExcessHet=3.0103;FS=3.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-3.180e-01;SOR=1.092;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,56:101:99:1617,0,1397
chr3	129291751	rs2244708	T	C	1718.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.780e-01;DB;DP=142;ExcessHet=3.0103;FS=0.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=1.01;SOR=0.614;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,77:142:99:1727,0,1431
chr3	129293106	rs6762822	G	C	2066.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=0.778;SOR=1.981;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:50:50,0,346
chr3	129293183	rs2625962	T	C	6733.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.69;SOR=2.559;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1706,147,0
chr3	129293256	rs2255703	T	C	2156.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.121e+00;DB;DP=145;ExcessHet=3.0103;FS=2.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-1.399e+00;SOR=0.527;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,83:145:99:2165,0,1597
chr3	129294456	rs2255508	C	T	1526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.770e-01;DB;DP=144;ExcessHet=3.0103;FS=2.986;MQ=59.92;MQRankSum=-1.104e+00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-8.950e-01;SOR=0.591;VQSLOD=1.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:80,64:144:99:1535,0,2047
chr3	129297223	rs1110168	C	G	507.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;DB;DP=37;ExcessHet=3.0103;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=1.06;SOR=0.395;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:516,0,453
chr3	129303197	rs2811463	T	C	13928.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=27.89;SOR=1.747;VQSLOD=4.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4674,403,0
chr3	129303436	rs2811462	T	G	1279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010e-01;DB;DP=102;ExcessHet=3.0103;FS=2.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.840;SOR=0.405;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,51:102:99:1288,0,1432
chr3	129305706	rs2625999	A	C	186.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.93;ReadPosRankSum=-7.050e-01;SOR=0.859;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:195,0,174
chr3	129307992	rs2811454	T	C	372.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=0.693;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:99,12,0
chr3	129308425	rs2251016	G	A	159.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.90;ReadPosRankSum=0.942;SOR=0.836;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,7:27:99:168,0,522
chr3	129308497	rs2251008	A	C	74.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.490e-01;DB;DP=13;ExcessHet=3.0103;FS=2.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.71;ReadPosRankSum=-8.170e-01;SOR=0.132;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:83:83,0,269
chr3	129324193	rs7619850	A	G	2926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=4.073;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:694,57,0
chr3	129546729	rs784689	T	C	19222.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=1.071;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,204:204:99:6415,611,0
chr3	129694934	rs784705	C	A	4186.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=2.041;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1466,132,0
chr3	129695038	rs11921179	G	A	1029.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=5.058;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr3	129695373	rs7645772	T	C	1463.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.600e-02;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=-1.399e+00;SOR=0.649;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:706,75,0
chr3	129695538	rs784704	C	T	8732.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.11;SOR=2.783;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2658,207,0
chr3	129695954	rs5662	T	C	10057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=27.29;SOR=1.575;VQSLOD=2.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2674,225,0
chr3	129696041	rs5663	A	G	7416.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=0.981;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1669,155,0
chr3	129740831	rs2976153	T	A	5132.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=50.13;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.64;SOR=1.745;VQSLOD=-5.661e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1315,117,0
chr3	129800688	rs67070157	C	A	234.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.54;SOR=2.584;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr3	129800783	rs72988371	A	T	543	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=50.47;NEGATIVE_TRAIN_SITE;QD=31.94;SOR=1.371;VQSLOD=-7.387e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:291,24,0
chr3	129800823	rs78610497	T	G	766.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=46.31;QD=31.94;SOR=0.859;VQSLOD=-3.776e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:316,30,0
chr3	129800888	rs76920544	G	A	1294.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=45.97;QD=34.13;SOR=0.906;VQSLOD=-3.953e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:129800888_G_A:520,36,0:129800888
chr3	129800895	rs79888841	G	A	1244.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=44.97;QD=27.77;SOR=1.071;VQSLOD=-3.792e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:129800888_G_A:520,36,0:129800888
chr3	129800934	rs76006430	C	G	976.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=47.11;QD=32.44;SOR=1.329;VQSLOD=-3.162e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:129800934_C_G:360,24,0:129800934
chr3	129800938	rs77137566	C	T	976.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=47.11;QD=34.31;SOR=1.329;VQSLOD=-3.222e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:129800934_C_G:360,24,0:129800934
chr3	129801012	rs72988374	C	T	198.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=51.60;QD=33.12;SOR=2.303;VQSLOD=0.844;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr3	129811073	rs13066399	T	C	19404.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.23;SOR=0.825;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,229:229:99:6744,687,0
chr3	129811323	rs11718709	G	A	2272.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.54;SOR=8.121;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:906,69,0
chr3	129811872	.	GAAA	G	675.41	PASS	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.27;QD=30.73;SOR=3.014;VQSLOD=4.64;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:148,15,0
chr3	129818152	rs56848274	CA	C	8074.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.865e+00;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=59.06;MQRankSum=0.877;POSITIVE_TRAIN_SITE;QD=31.92;ReadPosRankSum=0.216;SOR=0.722;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,38:84:99:1259,0,1604
chr3	129818389	rs56235703	A	G	1454.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440e-01;DB;DP=17;ExcessHet=3.0103;FS=4.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.69;ReadPosRankSum=0.897;SOR=1.994;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:226,0,227
chr3	129822492	rs9713340	G	A	998.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.30;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=28.04;ReadPosRankSum=-1.645e+00;SOR=2.670;VQSLOD=-1.478e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:75:0|1:129822492_G_A:120,0,75:129822492
chr3	129822494	rs9713334	C	T	998.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.33;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=34.05;ReadPosRankSum=-1.645e+00;SOR=2.753;VQSLOD=-1.481e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:75:0|1:129822492_G_A:120,0,75:129822492
chr3	129822552	rs9713344	G	A	1934.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.080e-01;DB;DP=21;ExcessHet=3.0103;FS=2.464;MQ=58.43;MQRankSum=-5.360e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=-3.580e-01;SOR=0.319;VQSLOD=-1.721e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,17:21:90:453,0,90
chr3	129822616	rs78806708	G	C	3929.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=52.36;MQRankSum=2.89;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.55;ReadPosRankSum=2.21;SOR=0.639;VQSLOD=-2.215e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,27:44:99:584,0,422
chr3	129822634	rs9713346	G	A	4845.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.642e+00;DB;DP=51;ExcessHet=3.0103;FS=3.180;MQ=51.98;MQRankSum=2.62;NEGATIVE_TRAIN_SITE;QD=33.42;ReadPosRankSum=1.10;SOR=0.379;VQSLOD=-2.935e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,29:51:99:641,0,517
chr3	129822639	rs2624639	A	G	6380.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=52.31;NEGATIVE_TRAIN_SITE;QD=26.00;SOR=1.149;VQSLOD=-1.076e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2043,159,0
chr3	129822950	rs12495527	A	G	4356.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.432e+00;DB;DP=58;ExcessHet=3.0103;FS=0.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=-3.110e-01;SOR=0.877;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,38:58:99:952,0,525
chr3	129827901	rs73210763	A	G	662.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.81;ReadPosRankSum=-8.880e-01;SOR=0.906;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:182,0,185
chr3	129931275	rs9881999	A	G	94.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=57.15;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.61;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=1.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,72
chr3	129931311	rs9844540	C	T	324.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=58.70;MQRankSum=0.00;QD=27.01;ReadPosRankSum=1.47;SOR=0.495;VQSLOD=-8.260e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:129931311_C_T:69,0,204:129931311
chr3	129931333	rs9844837	G	A	533.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.12;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.64;ReadPosRankSum=0.319;SOR=0.773;VQSLOD=4.70;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:129931311_C_T:66,0,226:129931311
chr3	129931353	rs9289365	C	T	732.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.06;SOR=1.127;VQSLOD=18.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:171,18,0
chr3	129931610	rs34989647	A	G	108.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=6;ExcessHet=3.0103;FS=3.310;MQ=58.17;MQRankSum=-4.310e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=-1.111e+00;SOR=0.105;VQSLOD=-3.234e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:33:117,0,33
chr3	130094938	rs75943025	T	C	617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.178;SOR=0.557;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:392,0,287
chr3	130095031	rs9835065	C	T	3758.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=74;ExcessHet=1.5490;FS=0.000;MQ=59.93;MQRankSum=-1.092e+00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=-3.870e-01;SOR=0.729;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2434,222,0
chr3	130098349	rs16845861	G	A	5711.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=145;ExcessHet=1.5490;FS=3.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=1.55;SOR=0.756;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4493,434,0
chr3	130103539	rs1453242	C	T	508.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.380e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-1.811e+00;SOR=0.330;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:335,27,0
chr3	130103709	rs1453241	G	A	3957.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.492e+00;DB;DP=91;ExcessHet=1.5490;FS=1.224;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.901;SOR=0.570;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2834,273,0
chr3	130104062	rs10212241	T	C	2301.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.315e+00;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=-4.470e-01;SOR=0.657;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1411,141,0
chr3	130104206	rs10212372	A	G	591.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.658e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.68;ReadPosRankSum=0.433;SOR=0.551;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:391,33,0
chr3	130104306	rs10212618	C	T	72	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=2.303;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	130108063	rs57575291	A	G	1159.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=22;ExcessHet=1.5490;FS=2.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=1.77;SOR=1.923;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:794,66,0
chr3	130109993	rs35898730	T	C	2111.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=90;ExcessHet=3.9794;FS=3.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=1.48;SOR=0.953;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,37:90:99:1014,0,1288
chr3	130110550	rs11917356	A	G	1283.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.510e-01;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=59.89;MQRankSum=0.955;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=0.109;SOR=0.693;VQSLOD=2.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:84:845,84,0
chr3	130113635	rs10934938	T	G	459.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=0.755;SOR=0.507;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:374,30,0
chr3	130114408	rs5852594	AC	A	2681.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=2.368;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:711,57,0
chr3	130116068	rs77995367	C	T	31.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.431;SOR=0.223;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:27:40,0,27
chr3	130116684	rs79867908	G	A	852.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=85;ExcessHet=3.0103;FS=1.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.307;SOR=0.896;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,36:85:99:861,0,1325
chr3	130116972	.	GTT	GT,G	376.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.819;DP=14;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=0.589;QD=9.18;ReadPosRankSum=1.59;SOR=0.818;VQSLOD=0.334;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,9:14:64:290,151,116,89,0,64
chr3	130120509	rs2123567	C	T	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=42;ExcessHet=3.0103;FS=4.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.53;ReadPosRankSum=0.735;SOR=1.585;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,13:42:99:241,0,638
chr3	130122125	rs10934939	G	A	249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=1.73;SOR=0.412;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:258,0,550
chr3	130122409	rs5852595	TG	T	3652.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=51;ExcessHet=3.9794;FS=0.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=1.21;SOR=0.765;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,19:51:99:418,0,770
chr3	130122552	rs10594986	TACACAC	T	414.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.82;ReadPosRankSum=0.936;SOR=0.693;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:198,0,275
chr3	130125350	rs1391056	A	C	68.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:74:74,0,104
chr3	130128000	rs79394681	A	G	491.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375e+00;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-2.970e-01;SOR=0.784;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:500,0,328
chr3	130128431	rs2173187	C	T	6311.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=1.585;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1738,174,0
chr3	130128534	rs1497311	G	A	474.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=21;ExcessHet=3.9794;FS=2.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-3.510e-01;SOR=1.588;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:181,0,428
chr3	130129128	rs3075233	T	TGTA	859.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=7;ExcessHet=3.0103;FS=2.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=-1.006e+00;SOR=0.264;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,188
chr3	130129322	rs35886424	G	C	1710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=93;ExcessHet=3.9794;FS=10.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.245;SOR=1.473;VQSLOD=18.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,29:93:99:678,0,1695
chr3	130129517	rs35209265	A	AG	1604.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=0.064;SOR=0.715;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,21:47:99:707,0,910
chr3	130132202	rs16827446	C	T	1094.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DB;DP=37;ExcessHet=3.9794;FS=5.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=0.321;SOR=0.187;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:563,0,588
chr3	130132257	rs76496538	A	G	991.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=-1.890e-01;SOR=0.826;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1000,0,817
chr3	130132851	rs10512767	A	G	6283.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=79;ExcessHet=3.0103;FS=3.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=1.52;SOR=1.015;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,38:79:99:1105,0,1103
chr3	130134453	rs13070906	C	T	929.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-02;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.935;SOR=0.710;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,19:40:99:0|1:130134453_C_T:724,0,1321:130134453
chr3	130134454	rs13070741	A	G	929.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.908;SOR=0.710;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,19:40:99:0|1:130134453_C_T:724,0,1321:130134453
chr3	130134563	rs7628563	G	A	1456.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=0.182;SOR=0.527;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:174,0,242
chr3	130135456	rs6439233	T	C	7956.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.83;SOR=1.367;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2513,231,0
chr3	130135575	rs4688798	A	T	10110.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=1.240;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3246,312,0
chr3	130137471	rs1542829	G	A	346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.233;DB;DP=31;ExcessHet=3.0103;FS=1.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.381;SOR=1.161;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:355,0,496
chr3	130137866	rs13062453	G	A	1486.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=-1.680e-01;SOR=0.880;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:217,0,274
chr3	130139884	rs12636289	C	T	358.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.00;SOR=1.061;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:57:193,0,57
chr3	130141427	rs976324	G	T	380.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=0.545;SOR=0.793;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:252,21,0
chr3	130141452	rs976325	A	G	486.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.310e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=1.65;SOR=0.877;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,9:10:10:278,0,10
chr3	130142584	rs2896545	A	T	898.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=23;ExcessHet=3.9794;FS=1.397;MQ=60.00;MQRankSum=0.00;QD=16.04;ReadPosRankSum=0.936;SOR=1.044;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,7:23:99:177,0,468
chr3	130142610	rs76376162	T	G	628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946e+00;DB;DP=40;ExcessHet=3.0103;FS=3.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.477;SOR=0.303;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,27:40:99:637,0,305
chr3	130142843	rs976558	C	T	885.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=20;ExcessHet=3.9794;FS=8.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=0.495;SOR=0.066;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:434,0,200
chr3	130144984	rs1874599	G	C	1547.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=5.892;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:533,39,0
chr3	130145175	rs9859372	G	A	1726.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.648e+00;DB;DP=90;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=1.40;SOR=0.695;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,42:90:99:976,0,1316
chr3	130148510	rs9875499	C	T	1996.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656e+00;DB;DP=83;ExcessHet=3.9794;FS=4.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=1.02;SOR=1.029;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,38:83:99:707,0,1013
chr3	130158183	rs10575443	TTGTG	T	517.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.21;SOR=5.283;VQSLOD=6.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr3	130162072	rs35241659	C	T	242.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.668e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=-7.920e-01;SOR=2.093;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	130162395	rs9883988	A	G	6089.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.710e-01;DB;DP=87;ExcessHet=3.0103;FS=0.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.76;ReadPosRankSum=-3.900e-02;SOR=0.636;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,49:87:99:1168,0,938
chr3	130174334	rs819085	G	A	4870.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-01;DB;DP=67;ExcessHet=3.0103;FS=2.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=0.132;SOR=0.964;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,37:67:99:831,0,647
chr3	130187817	rs322113	T	C	5164.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=0.230;SOR=0.671;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,32:78:99:817,0,1136
chr3	130190716	rs73868680	G	A	1649.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.325e+00;DB;DP=103;ExcessHet=3.0103;FS=2.658;MQ=60.00;MQRankSum=0.00;QD=16.01;ReadPosRankSum=-1.836e+00;SOR=0.458;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,61:103:99:1658,0,1212
chr3	130190988	rs13094418	C	G	491.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.695;SOR=0.252;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:189,0,268
chr3	130284284	rs9830253	G	A	23192.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=0.805;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,263:263:99:8052,787,0
chr3	130286886	rs9836961	T	C	2052.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.79;SOR=3.296;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:596,51,0
chr3	130289617	rs10934949	T	C	8016.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=1.775;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2540,230,0
chr3	130300650	rs6439249	T	C	12806.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.362e+00;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.01;ReadPosRankSum=0.549;SOR=0.392;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,119:120:99:3725,317,0
chr3	130307761	.	CAA	C	288.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.60;MQRankSum=0.00;QD=16.01;ReadPosRankSum=1.69;SOR=1.751;VQSLOD=5.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:9:39:98,0,39
chr3	130308702	rs4515022	A	G	4776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=1.958;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1419,143,0
chr3	130311166	rs1355050	T	A	676.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=5.784;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:231,18,0
chr3	130313017	rs1467015	T	G	738.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=4.407;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:274,21,0
chr3	130313219	rs77967786	G	A	1679.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DB;DP=56;ExcessHet=3.9794;FS=2.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.741;SOR=0.677;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,25:56:99:564,0,691
chr3	130317341	rs4336088	G	A	6616.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.80;SOR=1.118;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1931,203,0
chr3	130569557	rs1316658	T	G	5427.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DB;DP=49;ExcessHet=3.0103;FS=1.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=0.091;SOR=0.499;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:816,0,584
chr3	130651096	rs2685178	T	C	301.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.207e+00;SOR=0.960;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:310,0,425
chr3	130656526	rs56070977	C	T	322.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=0.563;SOR=0.804;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:331,0,295
chr3	130659650	rs73201921	A	T	710.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DB;DP=69;ExcessHet=3.0103;FS=2.349;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=1.22;SOR=1.148;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,27:69:99:719,0,1108
chr3	130674022	rs218494	A	G	1670.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.481e+00;DB;DP=14;ExcessHet=3.0103;FS=3.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=-1.766e+00;SOR=2.093;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:538,42,0
chr3	130678263	rs2760271	T	C	269.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=0.067;SOR=0.804;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:278,0,498
chr3	130685846	rs218497	A	T	1162.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.07;ReadPosRankSum=-6.180e-01;SOR=2.191;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:170,0,130
chr3	130715415	rs17282299	T	G	149.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.403e+00;DB;DP=14;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-1.403e+00;SOR=0.105;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:158,0,297
chr3	130715814	rs13061145	A	G	127.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=-8.420e-01;SOR=1.329;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:136,0,64
chr3	130719948	rs11403338	G	GA	145.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.53;ReadPosRankSum=-5.240e-01;SOR=1.061;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:32:42,0,32
chr3	130734061	rs7641006	C	T	190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.720e-01;DB;DP=39;ExcessHet=3.0103;FS=1.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.88;ReadPosRankSum=-9.830e-01;SOR=0.473;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,11:39:99:199,0,695
chr3	130734887	rs34645149	G	GT	583.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=50;ExcessHet=3.9794;FS=3.416;MQ=60.00;MQRankSum=0.00;QD=5.77;ReadPosRankSum=-2.240e-01;SOR=1.147;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,15:50:99:252,0,802
chr3	130737632	rs218503	A	G	993.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.270e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=-4.240e-01;SOR=1.402;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:158,0,290
chr3	130743812	rs35558913	G	A	848.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DB;DP=72;ExcessHet=3.0103;FS=0.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-1.357e+00;SOR=0.523;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,33:72:99:857,0,1038
chr3	130748733	rs9864242	A	G	1141.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=39;ExcessHet=3.9794;FS=3.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.043;SOR=0.374;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:558,0,463
chr3	130828790	rs9850655	G	A	1532.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.743e+00;DB;DP=38;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=1.08;SOR=0.747;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,12:38:99:228,0,749
chr3	130851101	rs4974466	A	G	1989.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=0.263;SOR=0.460;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,19:29:99:704,0,307
chr3	130852185	rs2674613	T	C	5695.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.115;DB;DP=56;ExcessHet=3.0103;FS=0.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=1.89;SOR=0.601;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:545,0,825
chr3	130852383	rs2718865	T	G	528.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=0.967;SOR=2.448;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:25:75,0,25
chr3	130873723	rs1400013	T	G	2016.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=45;ExcessHet=6.9897;FS=1.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-4.470e-01;SOR=0.859;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,16:45:99:488,0,834
chr3	130881409	rs1913898	T	C	1333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=17;ExcessHet=6.9897;FS=0.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=1.13;SOR=0.532;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:227,0,243
chr3	130947435	rs3738000	A	T	2138.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=39;ExcessHet=3.9794;FS=0.806;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=1.82;SOR=0.827;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:424,0,542
chr3	131186893	rs56928817	CA	C	1489.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.970e-01;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.60;ReadPosRankSum=-2.500e-01;SOR=0.782;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,35:39:99:1025,115,0
chr3	131188377	rs147441558	TAC	T	550.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.89;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=2.21;SOR=0.859;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:315,27,0
chr3	131188853	.	GA	G	30.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.36;ReadPosRankSum=-2.820e-01;SOR=0.223;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:9:39:39,0,200
chr3	131217318	rs4854897	G	A	75.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.35;SOR=0.693;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	131261662	rs10716194	TG	T	17066.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.89;SOR=1.191;VQSLOD=6.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,208:208:99:6228,625,0
chr3	131271476	rs17357337	C	G	154.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=3.258;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr3	131388336	rs4854783	C	T	266.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.29;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:72,0,30
chr3	131388823	rs1566692	C	T	1526.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=4.461;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:365,27,0
chr3	131404572	rs6439314	A	C	5905.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=3.319;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1722,135,0
chr3	131404641	rs6439315	C	A	4890.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=93;ExcessHet=1.5490;FS=3.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=-1.110e+00;SOR=1.036;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,43:93:99:1025,0,1242
chr3	131415186	rs2369133	T	C	488.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=5.136;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr3	131415340	rs2369134	C	T	1995.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-01;DB;DP=38;ExcessHet=1.5490;FS=3.895;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.05;ReadPosRankSum=-7.400e-02;SOR=1.270;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:419,0,609
chr3	131418898	.	CTTTT	C	1451.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DP=15;ExcessHet=3.0103;FS=1.542;MQ=59.48;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.19;ReadPosRankSum=0.371;SOR=1.206;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:15:99:285,0,180
chr3	131418966	rs3883881	T	C	768.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=-1.150e+00;SOR=4.514;VQSLOD=13.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:119,0,31
chr3	131624097	rs3749262	G	A	4690.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.146e+00;DB;DP=80;ExcessHet=3.9794;FS=2.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-1.113e+00;SOR=0.521;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,37:80:99:888,0,1135
chr3	131756139	rs10684727	C	CAT	562.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.58;ReadPosRankSum=-1.006e+00;SOR=1.329;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr3	131756241	rs2141570	T	C	2224.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=1.06;SOR=0.720;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:984,84,0
chr3	131756375	rs1569281	A	G	3735.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DB;DP=110;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=0.462;SOR=0.684;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,47:110:99:1015,0,1479
chr3	131756546	rs2178384	G	A	212.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.383e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=-2.930e-01;SOR=0.425;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:221,0,376
chr3	132063914	rs972774	A	T	2912.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724e+00;DB;DP=63;ExcessHet=6.9897;FS=3.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.277;SOR=0.480;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,42:63:99:1077,0,576
chr3	132069148	rs3816530	A	T	223.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:133,0,63
chr3	132153612	rs72990500	A	G	439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.911e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=59.60;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.437;SOR=0.576;VQSLOD=3.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:270,0,200
chr3	132165600	rs11296948	AG	A	1415.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.47;SOR=7.428;VQSLOD=7.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:250,21,0
chr3	132176391	rs72992345	C	T	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=-3.490e-01;SOR=0.859;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:207,0,188
chr3	132179072	rs57140786	GT	G	710.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=77;ExcessHet=3.0103;FS=3.189;MQ=60.00;MQRankSum=0.00;QD=9.22;ReadPosRankSum=-8.980e-01;SOR=1.143;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,34:77:99:719,0,924
chr3	132179280	.	AT	A	30.36	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.01;ReadPosRankSum=0.144;SOR=0.207;VQSLOD=5.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:34:34,0,252
chr3	132182443	rs11328911	TG	T	1165.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.83;SOR=0.678;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,9:31:99:261,0,769
chr3	132193658	.	TCCC	T	527.26	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=58.84;QD=31.11;SOR=5.283;VQSLOD=4.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr3	132196761	rs2369797	G	A	1645.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.597e+00;DB;DP=142;ExcessHet=3.0103;FS=2.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.519;SOR=0.507;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,68:142:99:1654,0,1958
chr3	132196816	rs2369796	A	T	8491.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.063;DB;DP=105;ExcessHet=3.0103;FS=5.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=0.577;SOR=0.446;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3324,326,0
chr3	132203683	rs11712240	C	T	96.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=-1.036e+00;SOR=0.132;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:97:105,0,97
chr3	132217796	rs7630475	G	A	193.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=0.967;SOR=0.527;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr3	132218196	rs2088712	C	T	3369.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=1.970;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1495,150,0
chr3	132218441	rs3834794	A	AT	1849.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.470e-01;DB;DP=17;ExcessHet=3.9794;FS=1.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=-2.440e-01;SOR=1.248;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:198,0,306
chr3	132218623	rs3762672	G	T	8500.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.882e+00;DB;DP=103;ExcessHet=3.0103;FS=1.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=0.816;SOR=0.827;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3040,309,0
chr3	132221076	rs200192843	CTT	C,CT	1967.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.590e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.156;SOR=0.716;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,12,22:37:99:788,406,465,233,0,200
chr3	132226317	rs55927833	C	CT	254.62	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.580e-01;DB;DP=19;ExcessHet=3.0103;FS=12.229;MQ=60.00;MQRankSum=0.00;QD=13.40;ReadPosRankSum=-1.790e-01;SOR=0.011;VQSLOD=1.00;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,12:19:99:259,0,128
chr3	132233712	rs11706865	G	C	377.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=1.63;SOR=1.292;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:329,0,125
chr3	132234986	rs3762673	A	G	351.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.97;ReadPosRankSum=0.674;SOR=2.670;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:39,3,0
chr3	132235022	rs3762674	G	T	543.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=5.421;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr3	132235044	rs3762675	A	C	82.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=58.36;MQRankSum=0.431;QD=9.14;ReadPosRankSum=1.12;SOR=0.283;VQSLOD=-1.059e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:91:91,0,221
chr3	132235047	rs3762676	A	G	952.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=59.33;POSITIVE_TRAIN_SITE;QD=26.70;SOR=6.273;VQSLOD=5.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:391,27,0
chr3	132235077	rs3762677	C	T	234.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.08;MQRankSum=0.579;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-4.130e-01;SOR=1.426;VQSLOD=0.067;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:16:99:243,0,293
chr3	132235794	rs954309	C	G	623.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=0.511;SOR=0.495;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:226,21,0
chr3	132241513	rs2305624	G	C	103.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.45;ReadPosRankSum=0.967;SOR=0.138;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:54:54,0,226
chr3	132242642	rs9833627	C	T	195.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.091;SOR=0.473;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:71,0,35
chr3	132244313	rs9843883	C	T	126.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.103e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.464;SOR=0.527;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:135,0,177
chr3	132244406	rs754993	G	A	4015.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.860e-01;DB;DP=47;ExcessHet=3.0103;FS=1.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.77;ReadPosRankSum=-2.780e-01;SOR=0.992;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1546,141,0
chr3	132247011	rs112750944	A	G	675.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=43;ExcessHet=3.0103;FS=1.379;MQ=60.00;MQRankSum=0.00;QD=15.70;ReadPosRankSum=0.694;SOR=1.158;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:684,0,479
chr3	132256930	rs114794825	G	A	234.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.32;ReadPosRankSum=-9.560e-01;SOR=0.693;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,10:32:99:243,0,667
chr3	132322262	rs2305623	T	G	225.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.820e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.849;SOR=0.582;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:234,0,271
chr3	132338177	rs10935022	T	C	86.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-6.520e-01;SOR=1.609;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:95:95,0,108
chr3	132346992	rs2305627	C	T	685.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=-5.700e-02;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:241,0,193
chr3	132347311	rs61650247	A	G	403.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=32;ExcessHet=3.0103;FS=1.725;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=1.46;SOR=1.127;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:412,0,503
chr3	132347414	rs16839460	C	T	59.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,76
chr3	132350462	rs10935023	C	T	64.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:73,0,76
chr3	132360883	rs821572	C	T	10794.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=0.797;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3336,318,0
chr3	132363527	rs1079367	T	C	289.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.967;SOR=0.941;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:56,0,33
chr3	132363786	rs72628560	T	A	185.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.86;ReadPosRankSum=0.372;SOR=0.941;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,8:27:99:194,0,586
chr3	132394556	rs2305629	T	C	1861.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=36;ExcessHet=6.9897;FS=4.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=1.22;SOR=0.716;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:444,0,489
chr3	132394784	rs12635575	A	T	570.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.351e+00;DB;DP=43;ExcessHet=3.0103;FS=2.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=0.560;SOR=0.503;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:579,0,538
chr3	132395811	rs1058331	G	T	431.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=1.32;SOR=0.430;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:440,0,281
chr3	132401421	rs6792074	G	A	1256.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039e+00;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-3.750e-01;SOR=0.566;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:293,0,262
chr3	132401600	rs6794496	C	T	1111.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.162;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=-6.570e-01;SOR=0.757;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,47:101:99:1120,0,1285
chr3	132407481	rs11396595	T	TA	319.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=33;ExcessHet=3.0103;FS=6.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-2.620e-01;SOR=2.066;VQSLOD=5.62;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,12:33:99:328,0,549
chr3	132409501	rs62292468	A	G	511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-8.110e-01;SOR=0.836;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,23:58:99:520,0,790
chr3	132413887	rs79047540	C	T	308.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.550e-01;DB;DP=28;ExcessHet=3.0103;FS=1.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=-6.230e-01;SOR=0.330;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:317,0,436
chr3	132413941	rs10804612	A	C	954.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=12;ExcessHet=6.9897;FS=1.363;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-3.100e-01;SOR=1.190;VQSLOD=6.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:89:89,0,181
chr3	132415851	rs77577514	G	C	60.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.431;SOR=2.303;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,115
chr3	132436901	rs35348816	AT	A	2957.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=44;ExcessHet=3.9794;FS=1.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=1.45;SOR=0.537;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,19:44:99:448,0,629
chr3	133098806	rs34111099	C	T	3351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;DB;DP=335;ExcessHet=3.0103;FS=2.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=0.827;SOR=0.829;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:190,145:335:99:3360,0,4743
chr3	133099245	rs1197314	G	A	3631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=118;ExcessHet=3.9794;FS=1.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.553;SOR=0.796;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,63:118:99:1671,0,1327
chr3	133114893	rs1197300	C	T	1418.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=3.003;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:305,24,0
chr3	133166403	rs7644197	A	G	2797.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.17;SOR=4.499;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:910,66,0
chr3	133167363	rs2276737	G	A	1594.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=24;ExcessHet=3.9794;FS=2.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-1.026e+00;SOR=1.044;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:758,72,0
chr3	133185834	rs2737717	T	C	3081.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.379;DB;DP=72;ExcessHet=1.5490;FS=1.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.97;ReadPosRankSum=-6.680e-01;SOR=0.833;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,26:72:99:609,0,1197
chr3	133191093	rs899458	A	G	1037.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201e+00;DB;DP=29;ExcessHet=3.9794;FS=2.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=-3.660e-01;SOR=0.361;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:461,0,382
chr3	133191453	rs7628499	A	G	1525.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.471;DB;DP=20;ExcessHet=3.0103;FS=1.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=0.493;SOR=1.092;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:682,60,0
chr3	133329943	rs1444601	G	A	4830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.278e+00;DB;DP=138;ExcessHet=6.9897;FS=0.518;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.501;SOR=0.648;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,65:138:99:1514,0,1774
chr3	133335787	rs3732574	C	T	2014.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.596e+00;DB;DP=42;ExcessHet=6.9897;FS=3.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=0.520;SOR=0.409;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,25:42:99:663,0,467
chr3	133339340	rs2887747	A	G	900.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.64;ReadPosRankSum=-1.006e+00;SOR=3.098;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:104,0,145
chr3	133341988	rs10935070	T	C	465.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.090e-01;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.198;SOR=0.765;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:474,0,423
chr3	133347388	rs114654375	A	G	556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DB;DP=70;ExcessHet=3.0103;FS=4.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.95;ReadPosRankSum=-2.510e-01;SOR=1.061;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,25:70:99:565,0,1129
chr3	133368362	rs3192149	T	G	3818.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=104;ExcessHet=6.9897;FS=2.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-1.013e+00;SOR=0.844;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1269,0,1449
chr3	133374030	rs7639941	T	C	1025.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.59;SOR=5.211;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr3	133375785	rs2718801	G	A	8048.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.089e+00;DB;DP=87;ExcessHet=3.0103;FS=3.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=0.827;SOR=1.081;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2920,261,0
chr3	133377782	rs2718804	G	A	466.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.282;SOR=0.936;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:475,0,273
chr3	133380130	rs2718805	T	C	4086.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.11;SOR=4.017;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:943,80,0
chr3	133465283	rs1130459	A	G	6839.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.057;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=-1.134e+00;SOR=0.702;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2488,228,0
chr3	133474328	rs12769	G	A	5870.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=128;ExcessHet=1.5490;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=0.715;SOR=0.702;VQSLOD=6.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,57:128:99:1467,0,1850
chr3	133475563	rs4241357	G	T	1262.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881e+00;DB;DP=10;ExcessHet=3.0103;FS=2.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.13;ReadPosRankSum=-1.000e-01;SOR=0.194;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:174,0,187
chr3	133476421	rs8177237	C	G	403.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=0.253;SOR=0.481;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,110
chr3	133476852	rs3811658	C	T	977.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=0.092;SOR=1.670;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:365,0,216
chr3	133482870	rs8177272	G	A	986.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=0.079;SOR=0.990;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:133482870_G_A:183,0,232:133482870
chr3	133482889	rs2715631	T	G	252.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=13;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=-1.380e-01;SOR=2.093;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,7:13:99:1|0:133482870_G_A:261,0,215:133482870
chr3	133483696	rs1880669	T	C	3574.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.38;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=-4.150e-01;SOR=0.720;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1363,138,0
chr3	133485133	rs2692696	A	G	8392.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=1.068;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3084,294,0
chr3	133485371	rs1525891	G	C	237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=21;ExcessHet=3.0103;FS=2.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.710;SOR=1.483;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:246,0,448
chr3	133485454	rs2692695	A	G	591.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.16;SOR=3.126;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr3	133486958	rs8649	G	C	539.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.620e-01;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=1.55;SOR=0.704;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:548,0,373
chr3	133489583	rs1525890	G	A	533.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-01;DB;DP=40;ExcessHet=3.0103;FS=1.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.920;SOR=0.375;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:542,0,540
chr3	133493705	rs35736766	GT	G	1889.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.600e-02;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.425;SOR=0.753;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,26:29:8:586,8,0
chr3	133493827	rs2715626	T	C	819.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.365;SOR=0.604;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,31:55:99:828,0,566
chr3	133494529	rs1880668	C	A	327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.650e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.00;SOR=0.375;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:336,0,338
chr3	133538762	.	AT	A	280.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.940;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.21;ReadPosRankSum=0.912;SOR=0.551;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:16:54:118,0,54
chr3	133553300	rs41272329	C	T	1689.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.081e+00;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=2.74;SOR=0.628;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,62:113:99:1698,0,1380
chr3	133553527	rs2280672	C	T	2939.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.265e+00;DB;DP=57;ExcessHet=1.5490;FS=5.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=-1.024e+00;SOR=0.263;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1951,171,0
chr3	133556964	rs139009223	ACCGTGCCGGGCC	A	6808.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.180;DB;DP=83;ExcessHet=3.9794;FS=0.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=0.934;SOR=0.780;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3643,251,0
chr3	133558154	rs2280673	A	C	1031.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.90;ReadPosRankSum=0.319;SOR=2.165;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:496,36,0
chr3	133558698	rs6765093	G	A	808.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.11;ReadPosRankSum=2.17;SOR=1.402;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:257,21,0
chr3	133654846	rs7616492	G	A	338.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-2.500e-02;SOR=0.317;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:347,0,611
chr3	133663824	rs139999843	A	AGT	51.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,138
chr3	133692471	rs55947930	C	G	289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=-6.470e-01;SOR=1.038;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:298,0,357
chr3	133692497	rs4634113	A	G	3517.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.94;SOR=3.009;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:907,78,0
chr3	133692743	rs4241362	C	T	7824.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=1.628;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2117,215,0
chr3	133692837	rs13063838	A	C	326.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=18;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-4.450e-01;SOR=2.147;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:335,0,233
chr3	133698191	rs55688756	G	A	371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=-1.404e+00;SOR=0.954;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:380,0,614
chr3	133698280	rs4640563	C	G	11349.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.43;SOR=1.242;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3721,353,0
chr3	133748266	rs73864036	G	A	102.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:111,0,26
chr3	133748332	.	ACTCG	A	250.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.19;ReadPosRankSum=-2.410e-01;SOR=2.948;VQSLOD=4.22;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:133748332_ACTCG_A:240,0,181:133748332
chr3	133748338	.	ACG	A	250.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=0.00;SOR=2.531;VQSLOD=4.78;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,6:10:99:0|1:133748332_ACTCG_A:240,0,181:133748332
chr3	133748789	rs113569514	T	C	473.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=12;ExcessHet=3.9794;FS=2.207;MQ=60.00;MQRankSum=0.00;QD=15.77;ReadPosRankSum=0.621;SOR=1.609;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:193,0,196
chr3	133877113	rs56088702	A	G	1468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.860e-01;DB;DP=121;ExcessHet=3.0103;FS=3.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.739;SOR=1.047;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,59:121:99:1477,0,1632
chr3	133894390	rs9858000	G	A	263.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=-1.036e+00;SOR=2.303;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr3	133896641	rs6439466	G	C	157.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.36;SOR=0.551;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:166,0,221
chr3	133926013	rs6439467	C	G	875.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.24;ReadPosRankSum=0.792;SOR=4.091;VQSLOD=14.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:53:195,0,53
chr3	133926736	rs9289461	A	G	273.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.18;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:75,0,34
chr3	133941320	rs1131262	C	T	428.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=37;ExcessHet=3.0103;FS=2.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.402;SOR=1.226;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:437,0,606
chr3	133941534	rs7611104	A	G	607.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=-8.420e-01;SOR=1.022;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:73:104,0,73
chr3	133969352	rs139860270	G	A	527.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=53;ExcessHet=3.0103;FS=1.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=1.13;SOR=0.527;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:536,0,614
chr3	133969437	.	A	AG	1903.70	PASS	AC=2;AF=1.00;AN=2;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=23.34;SOR=3.528;VQSLOD=4.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,26:26:78:945,78,0
chr3	134077470	rs1353776	C	G	2271.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450e-01;DB;DP=45;ExcessHet=1.5490;FS=0.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=1.85;SOR=0.548;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1493,135,0
chr3	134078433	rs75410942	G	GC	589.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.140e-01;DB;DP=15;ExcessHet=3.9794;FS=3.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=0.506;SOR=2.338;VQSLOD=6.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:158,0,195
chr3	134079528	rs4974486	T	C	266.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,107
chr3	134080661	rs1077718	A	G	8027.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=88;ExcessHet=3.0103;FS=0.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.27;ReadPosRankSum=-9.760e-01;SOR=0.766;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3084,264,0
chr3	134086207	rs1466827	G	A	852.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-02;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.43;ReadPosRankSum=0.231;SOR=1.473;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:153,0,141
chr3	134090505	rs12495847	A	G	134.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=1.07;SOR=0.527;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	134093768	rs55706438	TGC	T	79.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.46;SOR=1.179;VQSLOD=4.79;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr3	134197740	rs6790466	C	T	2396.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=-3.530e-01;SOR=0.737;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:401,0,467
chr3	134213981	rs17694011	T	C	1182.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358e+00;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=0.531;SOR=1.659;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:310,0,365
chr3	134214042	rs62269547	T	C	3051.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.809;DB;DP=47;ExcessHet=3.9794;FS=4.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.61;ReadPosRankSum=0.693;SOR=1.534;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:685,0,778
chr3	134226159	rs6766818	C	T	1764.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.071;DB;DP=12;ExcessHet=3.9794;FS=3.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.986;SOR=1.645;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,10:12:51:286,0,51
chr3	134256159	rs12634127	A	G	1011.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=0.186;SOR=0.560;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:92:227,0,92
chr3	134264218	rs7373651	T	C	211.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=1.609;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:141,15,0
chr3	134264297	rs34011308	AAT	A	754.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.34;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.32;ReadPosRankSum=1.60;SOR=3.352;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr3	134264859	rs1357762	A	C	800.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=8;ExcessHet=3.9794;FS=1.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=1.32;SOR=1.044;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:53:53,0,147
chr3	134266124	rs12637751	A	G	784.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=42;ExcessHet=3.9794;FS=5.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-6.070e-01;SOR=1.552;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,16:42:99:505,0,646
chr3	134266148	rs12632372	G	C	4026.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.379;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1479,147,0
chr3	134266321	rs11927068	A	G	915.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.10;DB;DP=33;ExcessHet=3.9794;FS=5.502;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.29;SOR=1.430;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:371,0,495
chr3	134266447	rs28702610	T	G	333.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.31;ReadPosRankSum=0.319;SOR=3.442;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:77,0,31
chr3	134277195	rs35934324	A	AT	1214.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.380e-01;DB;DP=26;ExcessHet=3.9794;FS=4.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-1.800e-01;SOR=0.309;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,13:26:99:316,0,318
chr3	134278270	rs1127826	C	T	1418.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=16;ExcessHet=6.9897;FS=1.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.650;SOR=0.990;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:298,0,181
chr3	134280395	rs6777283	T	A	3980.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=3.737;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1175,99,0
chr3	134293619	rs4586863	A	G	1095.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.25;SOR=3.258;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:302,21,0
chr3	134322742	rs2293293	A	G	10054.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=174;ExcessHet=3.9794;FS=8.901;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=0.957;SOR=1.200;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,75:174:99:1819,0,2764
chr3	134322814	rs2293294	G	C	3720.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333e+00;DB;DP=134;ExcessHet=3.9794;FS=9.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=1.52;SOR=0.471;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,79:134:99:2078,0,1452
chr3	134323156	rs4955535	A	G	13845.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=0.790;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4001,390,0
chr3	134328864	rs4245905	C	T	1106.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=1.43;SOR=1.609;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:251,0,211
chr3	134331874	rs7626611	T	C	13622.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.68;SOR=1.494;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3874,390,0
chr3	134331980	rs9838119	C	T	9012.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=162;ExcessHet=3.9794;FS=0.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=0.551;SOR=0.640;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,75:162:99:1803,0,2062
chr3	134332222	rs9838467	C	A	580.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.712;SOR=1.022;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:60:60,0,201
chr3	134343688	rs4440162	C	G	810.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=5.994;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:255,18,0
chr3	134344182	rs4435682	C	T	267.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=0.977;SOR=0.869;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:86:86,0,244
chr3	134346990	rs4245906	G	T	1808.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=6.138;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:337,24,0
chr3	134369716	rs13060869	C	A	8972.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=354;ExcessHet=3.9794;FS=3.300;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-4.990e-01;SOR=0.921;VQSLOD=6.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:181,173:354:99:4445,0,4381
chr3	134514579	rs9852662	T	C	129444.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=1437;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=1.227;VQSLOD=18.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1437:1437:99:43682,4313,0
chr3	134644433	rs40526	G	A	542.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DB;DP=14;ExcessHet=3.9794;FS=11.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.787;SOR=0.031;VQSLOD=17.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:301,0,109
chr3	134644517	rs36187	A	G	1784.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;DB;DP=36;ExcessHet=6.9897;FS=6.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-9.440e-01;SOR=0.327;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:462,0,554
chr3	134644636	rs635721	G	T	3035.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=60;ExcessHet=6.9897;FS=5.557;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-6.480e-01;SOR=1.065;VQSLOD=6.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:721,0,784
chr3	134669965	rs11929692	G	A	776.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=0.908;SOR=0.377;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:130,0,228
chr3	134670524	rs7644369	C	T	6683.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DB;DP=164;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-3.670e-01;SOR=0.722;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,65:164:99:1663,0,2711
chr3	134697009	rs373709784	A	AC	871.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=12;ExcessHet=3.9794;FS=1.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.524;SOR=1.075;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:76:76,0,301
chr3	134825512	rs3732567	G	C	1823.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.271e+00;DB;DP=59;ExcessHet=3.9794;FS=2.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=1.62;SOR=0.469;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,32:59:99:793,0,741
chr3	134852051	rs1525014	C	A	1562.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=5.994;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:410,30,0
chr3	134884541	rs1159403	A	G	432.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=4.977;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr3	134884652	rs1159404	A	C	877.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.326e+00;DB;DP=18;ExcessHet=6.9897;FS=1.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-6.230e-01;SOR=1.013;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:202,0,299
chr3	134898742	rs1042787	C	T	2428.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=77;ExcessHet=3.9794;FS=4.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-4.820e-01;SOR=1.020;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,34:77:99:770,0,1107
chr3	134898798	rs375222902	T	C	1071.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=103;ExcessHet=3.0103;FS=2.566;MQ=60.00;MQRankSum=0.00;QD=10.40;ReadPosRankSum=0.200;SOR=0.721;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,45:103:99:1080,0,1290
chr3	134898960	rs10512945	G	A	322.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.772;SOR=0.693;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:331,0,514
chr3	134920306	rs2270881	C	T	1486.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=129;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.675;SOR=0.653;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,61:129:99:1495,0,1649
chr3	134967507	rs73220299	A	C	252.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=0.224;SOR=0.582;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:261,0,277
chr3	134968032	rs3821501	A	G	182.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.524;SOR=1.609;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	134968440	rs35878491	C	CGTCT	1264.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.730e-01;DB;DP=55;ExcessHet=3.0103;FS=1.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.99;ReadPosRankSum=0.512;SOR=0.508;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,32:55:99:0|1:134968440_C_CGTCT:1273,0,866:134968440
chr3	134968465	rs4243397	T	C	3893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=3.318;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:99:1|1:134968440_C_CGTCT:1336,99,0:134968440
chr3	134968601	rs35944228	A	G	60.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:69,0,33
chr3	135798248	rs199806582	AT	A	319.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=15;ExcessHet=6.9897;FS=1.566;MQ=59.95;MQRankSum=0.00;QD=7.61;ReadPosRankSum=-8.270e-01;SOR=0.355;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:15:69:111,0,69
chr3	135806933	rs78473846	T	A	677.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.08;SOR=3.014;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:694,75,0
chr3	135822011	rs75262249	A	G	255.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=2.584;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:272,21,0
chr3	135913665	rs1992952	A	G	1450.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=3.003;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:316,27,0
chr3	135980420	rs34350990	GA	G	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=0.693;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:135980420_GA_G:90,6,0:135980420
chr3	135980425	rs35681043	T	G	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.54;SOR=0.693;VQSLOD=17.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:135980420_GA_G:90,6,0:135980420
chr3	136035737	rs9833162	A	G	4915.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=62;ExcessHet=3.0103;FS=8.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=0.567;SOR=0.237;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2150,185,0
chr3	136045213	rs17265675	G	A	2632.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=0.807;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2649,272,0
chr3	136047977	rs483465	A	G	1983.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=-7.920e-01;SOR=0.920;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:750,60,0
chr3	136057142	rs111861599	AATT	A	1977.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=1.280;VQSLOD=4.94;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1994,135,0
chr3	136059537	rs503973	G	C	4423.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=47;ExcessHet=3.0103;FS=2.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=-1.900e-01;SOR=0.431;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1621,141,0
chr3	136060139	rs477142	A	G	1191.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.09;SOR=4.047;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:317,27,0
chr3	136088038	rs9860801	G	A	2526.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.150e-01;DB;DP=32;ExcessHet=3.0103;FS=0.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=0.121;SOR=0.753;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:917,96,0
chr3	136139878	rs9819496	G	A	2991.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;DB;DP=41;ExcessHet=3.0103;FS=0.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.13;ReadPosRankSum=-3.640e-01;SOR=0.874;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1189,122,0
chr3	136183506	rs144070057	C	CA	503.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.68;SOR=2.303;VQSLOD=6.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:520,42,0
chr3	136196028	rs16843991	T	C	2072.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.312;SOR=0.682;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:640,57,0
chr3	136196071	rs1394092	C	T	4589.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.410;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.30;ReadPosRankSum=0.505;SOR=0.762;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1619,138,0
chr3	136218930	rs900048	C	T	1219.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.28;ReadPosRankSum=0.078;SOR=1.609;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:290,24,0
chr3	136240403	rs6773495	G	A	105.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.65;SOR=2.833;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr3	136305529	rs57681357	C	G	715.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.388;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=0.552;SOR=0.446;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:379,30,0
chr3	136310398	.	G	GA	91.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.040e-01;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.27;ReadPosRankSum=-2.050e-01;SOR=0.799;VQSLOD=5.14;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,5:25:42:0|1:136310398_G_GA:42,0,459:136310398
chr3	136667405	rs1048145	T	C	207.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.54;SOR=3.611;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:224,15,0
chr3	136676702	rs55871480	T	C	106.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.65;SOR=2.833;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr3	136699133	rs5852860	CT	C	991.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.739;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=59.85;MQRankSum=0.00;QD=19.08;ReadPosRankSum=-1.800e-01;SOR=1.329;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,22:25:47:603,47,0
chr3	136701396	rs361238	T	G	349.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.99;ReadPosRankSum=-4.640e-01;SOR=1.329;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr3	136728886	rs361235	G	T	632.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.931e+00;DB;DP=8;ExcessHet=1.5490;FS=5.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=0.983;SOR=0.066;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:319,24,0
chr3	136739387	rs63332362	CT	C	2131.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.388e+00;DB;DP=38;ExcessHet=1.5490;FS=2.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=1.58;SOR=0.408;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1534,114,0
chr3	136739406	rs1385306	C	G	1636.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.100e-01;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=1.10;SOR=0.632;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1211,117,0
chr3	137484494	rs12497608	G	C	998.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.072e+00;DB;DP=17;ExcessHet=6.9897;FS=2.876;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=-7.890e-01;SOR=0.211;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:358,0,153
chr3	137743508	rs17204075	A	T	2064.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e-01;DB;DP=167;ExcessHet=3.0103;FS=0.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-8.690e-01;SOR=0.624;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,84:167:99:2073,0,2065
chr3	137748521	rs41265449	T	G	712.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=55;ExcessHet=3.0103;FS=1.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-1.535e+00;SOR=0.426;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:721,0,834
chr3	137748586	rs41265451	G	A	996.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.413e+00;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.640;SOR=0.660;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1005,0,1523
chr3	137748822	rs58607601	C	CA	346.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=22;ExcessHet=3.0103;FS=3.188;MQ=60.00;MQRankSum=0.00;QD=15.74;ReadPosRankSum=-6.800e-02;SOR=1.329;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,15:22:99:355,0,132
chr3	137748979	rs6780412	T	G	149.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.96;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	137749839	rs16847742	A	G	1263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.933e+00;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-4.480e-01;SOR=0.766;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,51:96:99:1272,0,1211
chr3	137750056	rs55923693	T	C	214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-5.520e-01;SOR=0.569;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:223,0,213
chr3	137781923	rs329388	A	C	3000.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.10;SOR=1.775;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1022,84,0
chr3	137783700	rs179282	T	C	2507.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.49;SOR=2.670;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1046,84,0
chr3	137786442	rs442800	T	C	5837.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.39;SOR=1.066;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2117,207,0
chr3	137787047	rs374045	C	T	2490.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.44;SOR=2.899;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:892,72,0
chr3	137787192	rs446644	T	C	8389.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.07;SOR=0.921;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2883,273,0
chr3	137787282	rs419075	T	C	6218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=1.442;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2362,234,0
chr3	137787355	rs446847	T	C	3257.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.71;SOR=4.228;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1288,99,0
chr3	137787935	rs382629	G	A	5366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.17;SOR=0.783;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1490,161,0
chr3	137787963	rs445025	T	G	5053.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.00;SOR=0.892;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1339,138,0
chr3	137788123	rs425938	T	G	1019.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=6.518;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:293,21,0
chr3	137788141	rs407009	T	A	478.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=5.136;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr3	137790843	rs2724706	C	T	1598.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=7.378;VQSLOD=24.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:410,30,0
chr3	137790903	rs2622705	A	G	807.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.54;SOR=6.091;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:95,9,0
chr3	137799049	rs2724696	A	C	257.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.55;SOR=3.912;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:137799049_A_C:45,3,0:137799049
chr3	137799050	rs2724695	G	A	257.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.87;SOR=3.912;VQSLOD=18.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:137799049_A_C:45,3,0:137799049
chr3	137799291	rs384828	A	T	5037.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=0.853;VQSLOD=19.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1350,144,0
chr3	137799498	rs405602	T	C	1642.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=2.352;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:364,36,0
chr3	137800656	rs2622711	A	G	5699.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=1.211;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1896,192,0
chr3	137807259	rs2724693	G	A	6137.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=0.876;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1983,201,0
chr3	137811006	rs140644204	T	TTAAC	705.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=5.421;VQSLOD=7.31;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	137816817	rs7629243	A	C	6441.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=29.91;SOR=3.707;VQSLOD=6.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1743,141,0
chr3	137816878	rs78556902	C	T	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-8.350e-01;SOR=0.223;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:216,0,226
chr3	137820328	rs329383	G	A	6143.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=1.126;VQSLOD=17.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2011,192,0
chr3	137820463	rs186056957	C	T	853.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=58;ExcessHet=3.0103;FS=2.226;MQ=60.00;MQRankSum=0.00;QD=14.71;ReadPosRankSum=-6.690e-01;SOR=1.028;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,29:58:99:862,0,801
chr3	137820942	rs329382	A	G	5322.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.06;SOR=0.810;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1452,138,0
chr3	137843018	rs1564496	G	C	7689.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.810e-01;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.26;ReadPosRankSum=-1.950e-01;SOR=0.396;VQSLOD=6.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,77:80:99:2514,212,0
chr3	137843106	rs2170309	T	C	10635.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.200;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.98;ReadPosRankSum=0.945;SOR=0.239;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,98:99:99:3339,258,0
chr3	137843476	rs2246945	G	T	10670.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=0.781;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3281,305,0
chr3	137850003	rs2724691	A	G	9724.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=1.195;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3199,300,0
chr3	137880695	rs9851548	A	G	3205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.93;SOR=2.356;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:722,60,0
chr3	137880743	rs2622736	G	A	6505.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.85;ReadPosRankSum=1.20;SOR=0.716;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1657,152,0
chr3	137881265	rs3732839	T	A	12967.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=0.852;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4030,382,0
chr3	137882377	rs2622734	G	T	2831.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=5.226;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:532,39,0
chr3	137882752	rs2622733	A	G	5428.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.049e+00;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.93;ReadPosRankSum=-1.649e+00;SOR=0.573;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1831,144,0
chr3	137890750	rs811811	T	C	602.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.29;SOR=5.421;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:223,15,0
chr3	137893744	rs329379	G	T	819.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270e+00;DB;DP=17;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=2.18;SOR=1.897;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:198,0,417
chr3	137958438	rs6778511	C	T	1528.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540e+00;DB;DP=26;ExcessHet=6.9897;FS=0.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-2.082e+00;SOR=0.589;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:272,0,462
chr3	137982718	rs939453	T	G	3978.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=35;ExcessHet=3.9794;FS=2.340;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=2.29;SOR=0.652;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:664,0,316
chr3	137988662	.	CTT	C	308.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.870e-01;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.18;MQRankSum=-8.420e-01;QD=9.08;ReadPosRankSum=0.123;SOR=0.862;VQSLOD=0.500;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:97:106,0,97
chr3	138008140	rs3732840	T	G	1282.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.96;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.67;ReadPosRankSum=0.209;SOR=3.442;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:548,39,0
chr3	138020275	rs7637162	A	G	1883.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.98;ReadPosRankSum=-7.010e-01;SOR=0.793;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:824,66,0
chr3	138020677	rs6801411	C	T	2729.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=4.863;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1005,84,0
chr3	138025136	rs3856636	T	G	3261.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=38;ExcessHet=3.0103;FS=1.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=-7.910e-01;SOR=0.556;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1287,114,0
chr3	138025396	rs9846480	A	G	1864.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=-7.900e-01;SOR=1.003;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:741,57,0
chr3	138033181	rs9289556	C	T	5037.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.993;DB;DP=62;ExcessHet=3.0103;FS=5.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=0.758;SOR=0.789;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1834,137,0
chr3	138038099	rs11714091	C	G	148.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=-7.030e-01;SOR=0.330;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:95:157,0,95
chr3	138043535	rs10575947	TACACACAC	T	1228.21	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.12;ReadPosRankSum=0.998;SOR=0.981;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:25:338,25,0
chr3	138043855	.	C	A	604.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539e+00;DP=53;ExcessHet=3.0103;FS=2.386;MQ=60.00;MQRankSum=0.00;QD=11.40;ReadPosRankSum=-4.000e-01;SOR=0.384;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:613,0,730
chr3	138091701	rs1199333	G	T	4024.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.320e+00;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=-3.330e-01;SOR=0.755;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1637,141,0
chr3	138154174	rs7609893	C	T	416.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.38;SOR=4.804;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	138170684	rs774016	G	A	2555.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.964e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=-6.180e-01;SOR=0.986;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:853,69,0
chr3	138170788	rs13095961	T	G	7433.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.08;DB;DP=143;ExcessHet=3.9794;FS=2.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.77;ReadPosRankSum=-6.460e-01;SOR=0.863;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,54:143:99:1486,0,2392
chr3	138171042	rs4678418	C	T	3979.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.69;ReadPosRankSum=1.17;SOR=0.732;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,24:49:99:753,0,769
chr3	138173905	rs56236670	G	A	1576.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.538e+00;DB;DP=19;ExcessHet=3.9794;FS=2.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=1.23;SOR=0.205;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:360,0,327
chr3	138174306	rs146958628	CCCG	C	779.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.00;ReadPosRankSum=0.511;SOR=2.303;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:31:268,0,31
chr3	138176533	rs66644444	A	T	7073.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=124;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.661;SOR=0.712;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,69:124:99:1865,0,1321
chr3	138177764	rs774008	A	G	667.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.40;ReadPosRankSum=1.38;SOR=0.399;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:76,0,70
chr3	138179308	rs67037472	G	A	2446.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.118e+00;DB;DP=32;ExcessHet=3.9794;FS=1.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=0.038;SOR=0.479;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:386,0,639
chr3	138179328	rs6763380	C	T	3079.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.410;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=0.217;SOR=0.707;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:424,0,782
chr3	138187568	rs1679167	C	T	5442.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=125;ExcessHet=3.9794;FS=1.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=-1.040e-01;SOR=0.805;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,47:125:99:982,0,2015
chr3	138189031	rs2347469	T	C	4257.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=62;ExcessHet=3.9794;FS=3.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=-7.000e-02;SOR=0.929;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,29:62:99:779,0,870
chr3	138189658	rs3813264	A	G	4744.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.75;DB;DP=77;ExcessHet=3.9794;FS=1.855;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=0.785;SOR=0.846;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,31:77:99:870,0,1193
chr3	138191232	rs10935282	G	A	7652.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.091e+00;DB;DP=131;ExcessHet=3.9794;FS=0.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=0.856;SOR=0.782;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,53:131:99:1498,0,2358
chr3	138192192	rs1679168	T	C	727.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.96;ReadPosRankSum=0.511;SOR=2.066;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:207,0,133
chr3	138195529	rs1679169	C	T	5316.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158e+00;DB;DP=79;ExcessHet=3.9794;FS=2.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=-8.210e-01;SOR=0.572;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,39:79:99:1010,0,1088
chr3	138213709	rs774012	T	C	540.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.510e-01;DB;DP=9;ExcessHet=3.9794;FS=3.900;MQ=59.47;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=1.90;SOR=2.356;VQSLOD=0.279;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:157,0,135
chr3	138213849	rs10593783	ATTTGT	A	2715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=43;ExcessHet=3.9794;FS=4.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=0.432;SOR=1.168;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,19:43:99:690,0,1459
chr3	138216173	.	TA	T	72.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e+00;DP=12;ExcessHet=3.9794;FS=9.353;MQ=60.00;MQRankSum=0.00;QD=4.02;ReadPosRankSum=0.163;SOR=0.089;VQSLOD=2.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,2:12:36:36,0,163
chr3	138244400	rs9878436	C	T	472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.530e-01;DB;DP=47;ExcessHet=3.9794;FS=0.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.49;ReadPosRankSum=-1.880e-01;SOR=0.831;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,17:47:99:265,0,691
chr3	138248009	.	GA	G	152.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DP=20;ExcessHet=6.9897;FS=3.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.78;ReadPosRankSum=0.620;SOR=1.287;VQSLOD=6.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:20:36:36,0,322
chr3	138251302	rs7643973	G	T	856.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401e+00;DB;DP=32;ExcessHet=3.9794;FS=9.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=1.99;SOR=0.146;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,21:32:99:474,0,296
chr3	138251447	rs10549552	CGGTAT	C	1587.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-02;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.795;SOR=0.729;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,15:40:99:555,0,1675
chr3	138256252	rs542010	G	A	492.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=0.392;SOR=0.330;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:130,0,246
chr3	138289163	rs1673608	T	C	2562.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=36;ExcessHet=3.9794;FS=5.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=-7.500e-01;SOR=0.283;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:511,0,396
chr3	138289221	rs1673607	C	T	4811.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=1.76;SOR=0.670;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,41:74:99:962,0,834
chr3	138329862	rs811322	G	A	6123.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=88;ExcessHet=3.9794;FS=0.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=2.07;SOR=0.775;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,42:88:99:947,0,1114
chr3	138341284	rs11303336	CT	C	1647.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=37;ExcessHet=3.9794;FS=5.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-6.330e-01;SOR=1.258;VQSLOD=6.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,18:37:99:359,0,291
chr3	138348081	rs470678	C	T	4990.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.690e-01;DB;DP=102;ExcessHet=3.9794;FS=1.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=1.30;SOR=0.587;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3015,305,0
chr3	138376323	rs361089	T	C	292.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.260e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=1.04;SOR=2.303;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	138403390	rs625468	C	T	1141.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.141e+00;DB;DP=15;ExcessHet=3.9794;FS=13.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=-1.550e-01;SOR=0.027;VQSLOD=14.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:261,0,170
chr3	138417989	rs361080	G	A	2009.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=19;ExcessHet=3.9794;FS=1.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.16;ReadPosRankSum=1.64;SOR=0.394;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:273,0,309
chr3	138433568	rs497900	C	T	2538.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=50;ExcessHet=3.9794;FS=4.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=-8.200e-01;SOR=1.141;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,17:50:99:409,0,833
chr3	138452468	.	C	G	35.63	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=17.81;SOR=0.693;VQSLOD=13.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	138474986	rs476800	T	C	455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=0.431;SOR=1.863;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:67,0,32
chr3	138668233	rs5852928	C	CGT	785.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.909;DB;DP=16;ExcessHet=6.9897;FS=5.657;MQ=60.00;MQRankSum=0.00;QD=14.55;ReadPosRankSum=0.676;SOR=1.775;VQSLOD=5.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:217,0,220
chr3	138724757	rs11924188	C	G	31078.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.08;DB;DP=442;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=-9.730e-01;SOR=0.696;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,442:442:99:13807,1326,0
chr3	138725245	rs4894334	A	C	343.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.40;SOR=1.609;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:276,21,0
chr3	138739617	rs1720230	A	G	541.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;DB;DP=3;ExcessHet=3.0103;FS=5.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.54;ReadPosRankSum=0.269;SOR=0.091;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr3	138763627	rs62970060	GTGC	G	795.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.37;SOR=2.303;VQSLOD=5.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	139065988	rs1610195	C	T	1989.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.747e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.31;ReadPosRankSum=-2.156e+00;SOR=1.675;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:786,63,0
chr3	139066902	rs10755092	A	T	1376.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.93;ReadPosRankSum=1.81;SOR=1.655;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:463,39,0
chr3	139068008	rs11706615	T	A	3617.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.150e-01;DB;DP=25;ExcessHet=3.0103;FS=2.343;MQ=59.98;MQRankSum=1.27;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=-4.980e-01;SOR=0.420;VQSLOD=2.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:854,75,0
chr3	139068277	rs10935321	G	A	1783.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.925e+00;DB;DP=37;ExcessHet=1.5490;FS=4.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=-1.788e+00;SOR=0.330;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1182,111,0
chr3	139069569	rs6776315	T	C	630.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501e+00;DB;DP=4;ExcessHet=3.0103;FS=5.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.53;ReadPosRankSum=-4.310e-01;SOR=3.500;VQSLOD=16.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr3	139070112	rs6788313	A	G	232.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.28;SOR=3.912;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:41,3,0
chr3	139075644	rs9878548	C	A	320.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.26;SOR=4.615;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:134,12,0
chr3	139075938	rs7833	C	T	247.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-1.579e+00;SOR=0.495;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr3	139077415	rs1844977	C	T	1063.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.82;SOR=5.211;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:241,18,0
chr3	139081416	rs57549985	TTA	T	265.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=-2.530e-01;SOR=2.303;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr3	139087235	rs9289574	G	A	1571.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.493;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.44;ReadPosRankSum=-3.980e-01;SOR=3.306;VQSLOD=18.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:777,57,0
chr3	139088481	rs11717119	T	C	423.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=1.47;SOR=0.610;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:279,24,0
chr3	139090389	rs7375091	T	A	774.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.800e-02;DB;DP=14;ExcessHet=1.5490;FS=5.064;MQ=59.33;MQRankSum=0.842;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.29;ReadPosRankSum=1.24;SOR=3.258;VQSLOD=0.264;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:569,42,0
chr3	139090736	rs7373116	G	A	1983.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.781;DB;DP=43;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=1.05;SOR=0.781;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,42:43:99:1358,99,0
chr3	139093140	rs62735660	CGAT	C	351.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.23;SOR=4.615;VQSLOD=5.94;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr3	139102120	rs7373302	C	A	9405.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.75;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=-7.280e-01;SOR=0.717;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3949,370,0
chr3	139102441	rs1586862	T	C	318.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.32;ReadPosRankSum=-5.240e-01;SOR=3.056;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr3	139108250	rs3215032	C	CTG	2545.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.467;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=0.114;SOR=2.242;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1350,90,0
chr3	139108716	rs11706576	T	A	452.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.31;ReadPosRankSum=-3.280e-01;SOR=2.049;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:362,27,0
chr3	139236683	rs2071388	C	T	1516.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.626e+00;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.27;ReadPosRankSum=0.689;SOR=1.739;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1051,78,0
chr3	139237008	rs167187	G	A	409.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.095e+00;DB;DP=5;ExcessHet=1.5490;FS=3.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=0.353;SOR=2.049;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr3	139246382	rs295493	A	G	1740.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.684e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=-1.521e+00;SOR=0.920;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:705,66,0
chr3	139257545	rs34662123	GC	G	2578.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.160e-01;DB;DP=49;ExcessHet=1.5490;FS=6.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=0.950;SOR=0.179;VQSLOD=6.15;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1596,147,0
chr3	139280328	rs35898558	G	GA	2030.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.17;SOR=3.952;VQSLOD=5.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:598,48,0
chr3	139294516	rs10935336	C	T	558.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.42;ReadPosRankSum=0.272;SOR=2.419;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:133,0,144
chr3	139297655	rs10513083	A	G	2602.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.410e-01;DB;DP=37;ExcessHet=1.5490;FS=3.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=-1.426e+00;SOR=0.267;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:698,0,540
chr3	139318241	rs1846021	A	T	2867.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DB;DP=86;ExcessHet=3.9794;FS=2.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=-7.690e-01;SOR=0.866;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1126,0,1128
chr3	139346684	rs62273066	C	G	2020.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.030;DB;DP=75;ExcessHet=3.9794;FS=0.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.658;SOR=0.809;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,39:75:99:1087,0,1009
chr3	139894697	rs4305391	T	C	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.677;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.53;ReadPosRankSum=0.239;SOR=0.426;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,8:27:99:185,0,552
chr3	140139743	rs11338320	GC	G	703.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.352e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=-2.620e+00;SOR=1.781;VQSLOD=5.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:445,33,0
chr3	140140213	rs7643984	A	T	872.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.923e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.542;SOR=0.990;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:494,39,0
chr3	140167227	rs6765235	C	G	160.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=3.258;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr3	140167536	rs2081803	A	G	8812.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.500e-01;DB;DP=97;ExcessHet=3.0103;FS=1.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=-1.061e+00;SOR=0.856;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3055,291,0
chr3	140185170	rs495109	A	T	1522.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.280e-01;DB;DP=17;ExcessHet=3.0103;FS=2.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=-9.300e-01;SOR=0.310;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:556,51,0
chr3	140185248	rs534395	T	C	2486.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=42;ExcessHet=1.5490;FS=2.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=-7.170e-01;SOR=1.000;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:597,0,542
chr3	140281723	rs11714465	C	T	10511.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=0.751;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3103,291,0
chr3	140282084	rs4683509	C	G	7751.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.85;ReadPosRankSum=-4.340e-01;SOR=1.558;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2117,180,0
chr3	140282316	rs11916215	A	C	328.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.00;SOR=2.833;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr3	140282341	rs10935386	C	T	201.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.85;SOR=1.981;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr3	140282861	rs10804675	C	T	21718.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=245;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=0.699;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,245:245:99:7188,732,0
chr3	140285115	rs4683510	T	C	1342.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=4.461;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:412,33,0
chr3	140396869	rs6762605	C	T	644.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.730e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.70;ReadPosRankSum=-3.610e-01;SOR=2.636;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	140397653	rs1690879	C	A	187.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=0.00;SOR=0.340;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:64:64,0,192
chr3	140397714	rs9878690	G	A	245	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.45;SOR=3.912;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr3	140401693	rs698673	A	G	22857.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=190;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.40;SOR=0.780;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,190:190:99:6655,570,0
chr3	140406947	rs28594654	G	A	12067.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=196;ExcessHet=3.9794;FS=1.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=1.29;SOR=0.795;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:127,69:196:99:1531,0,3234
chr3	140407260	rs9876490	C	A	6608.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.780e-01;DB;DP=104;ExcessHet=3.9794;FS=0.907;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=0.749;SOR=0.622;VQSLOD=6.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,41:104:99:1153,0,1840
chr3	140419715	rs1540506	C	T	5795.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;DB;DP=100;ExcessHet=3.9794;FS=1.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=-1.970e-01;SOR=0.804;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,51:100:99:1239,0,1158
chr3	140678384	.	T	TA	106.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DP=35;ExcessHet=3.9794;FS=3.345;MQ=60.00;MQRankSum=0.00;QD=2.13;ReadPosRankSum=-1.172e+00;SOR=0.372;VQSLOD=4.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,9:35:99:109,0,465
chr3	140682087	.	T	TA	93.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DP=48;ExcessHet=3.0103;FS=10.013;MQ=59.93;MQRankSum=0.00;QD=1.95;ReadPosRankSum=-4.710e-01;SOR=0.200;VQSLOD=2.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:38,10:48:99:102,0,783
chr3	140692486	rs2555707	G	T	2157.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=2.340;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:292,24,0
chr3	140695478	rs63101963	G	GA	290.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-1.068e+00;SOR=2.419;VQSLOD=6.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:14:62,0,14
chr3	140850847	rs4683563	C	T	850.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.51;SOR=3.912;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:341,24,0
chr3	140978921	rs3796259	C	T	901.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=39;ExcessHet=3.9794;FS=1.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-7.160e-01;SOR=0.516;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,12:39:99:271,0,729
chr3	140979184	rs1511378	T	C	1628.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.683e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.16;ReadPosRankSum=0.744;SOR=2.019;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:450,36,0
chr3	140993711	rs11715472	T	C	942.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=0.108;SOR=1.432;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:269,21,0
chr3	140996969	rs6803826	A	G	543.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.81;ReadPosRankSum=0.674;SOR=3.912;VQSLOD=17.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr3	140996993	rs10935426	C	G	715.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.07;ReadPosRankSum=0.842;SOR=2.636;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr3	140997024	rs12488569	C	T	654.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=-3.860e-01;SOR=0.337;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:140997024_C_T:223,0,108:140997024
chr3	140997031	rs6792660	T	C	1253.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=-7.020e-01;SOR=0.470;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,9:12:99:0|1:140997024_C_T:297,0,99:140997024
chr3	140997320	rs11556022	C	T	1069.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=75;ExcessHet=3.0103;FS=0.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=1.05;SOR=0.507;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,39:75:99:1078,0,905
chr3	140998214	rs13087169	G	A	4906.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.051;DB;DP=68;ExcessHet=3.9794;FS=1.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.852;SOR=0.553;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,43:68:99:1043,0,521
chr3	141006396	rs2137016	G	C	260.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.524;SOR=0.527;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:56:56,0,146
chr3	141162128	rs62282002	C	G	1788.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=76;ExcessHet=3.9794;FS=0.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=0.194;SOR=0.752;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,33:76:99:895,0,1178
chr3	141162185	rs16851435	T	G	1850.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.609;SOR=0.637;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,32:67:99:892,0,926
chr3	141299397	rs10635293	T	TACACAC	113.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.96;ReadPosRankSum=-2.000e-01;SOR=0.765;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,4:19:99:122,0,832
chr3	141327474	rs295323	G	A	1924.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=65;ExcessHet=3.9794;FS=2.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=1.68;SOR=0.941;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,33:65:99:860,0,740
chr3	141327593	rs2312266	C	T	316.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.364e+00;DB;DP=20;ExcessHet=3.0103;FS=2.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.540;SOR=0.330;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:325,0,257
chr3	141331222	rs2172471	G	A	1538.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.918;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=0.785;SOR=0.650;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:651,0,544
chr3	141496974	rs1533499	G	A	1660.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.065e+00;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.890;SOR=0.987;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:244,0,369
chr3	141621075	rs5853057	TG	T	1390.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.920e-01;DB;DP=103;ExcessHet=3.0103;FS=1.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=2.36;SOR=0.473;VQSLOD=6.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,55:103:99:1399,0,1170
chr3	141622695	rs11710245	G	A	650.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=-6.380e-01;SOR=0.880;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:659,0,355
chr3	141622749	rs6440050	G	C	218.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=2.39;SOR=1.609;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:227,0,252
chr3	141625999	rs7622417	G	C	1044.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254e+00;DB;DP=68;ExcessHet=3.0103;FS=0.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-1.010e+00;SOR=0.545;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,40:68:99:1053,0,742
chr3	141626123	rs3792411	A	G	883.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.272e+00;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.502;SOR=0.610;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,32:54:99:892,0,605
chr3	141632797	rs2288636	G	T	393.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=37;ExcessHet=3.0103;FS=1.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-2.320e-01;SOR=1.026;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:402,0,586
chr3	141632816	rs2288635	A	G	348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=25;ExcessHet=3.0103;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.917;SOR=1.214;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,10:25:99:0|1:141632816_A_G:357,0,562:141632816
chr3	141632822	rs2288634	A	G	356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670e-01;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=0.685;SOR=1.038;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,9:20:99:0|1:141632816_A_G:365,0,466:141632816
chr3	141632860	rs3214585	C	CA	119.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.210;SOR=2.303;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:12:128,0,12
chr3	141635598	rs11712817	C	A	409.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=-4.640e-01;SOR=1.911;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:180,0,135
chr3	141641015	rs3765155	C	G	2026.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.273;DB;DP=38;ExcessHet=1.5490;FS=1.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-4.240e-01;SOR=1.007;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:451,0,519
chr3	141644175	rs4683650	T	C	1046.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.72;ReadPosRankSum=-4.430e-01;SOR=2.833;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:162,0,179
chr3	141644274	rs1131029	G	C	3759.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.757e+00;DB;DP=42;ExcessHet=3.0103;FS=1.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=-8.060e-01;SOR=0.965;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:624,0,627
chr3	141678347	rs6440054	A	T	775.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.96;SOR=6.091;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr3	141682478	rs11569262	T	C	95.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-1.350e-01;SOR=0.368;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:104,0,174
chr3	141682825	rs3792409	C	G	408.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.797e+00;DB;DP=29;ExcessHet=3.0103;FS=3.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.13;SOR=0.198;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:417,0,367
chr3	141688903	rs4683655	C	T	591.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.610;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-1.039e+00;SOR=0.682;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:600,0,524
chr3	141689017	rs11569252	T	C	734.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=1.74;SOR=0.941;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,19:30:99:0|1:141689017_T_C:743,0,443:141689017
chr3	141689025	rs11569251	C	G	699.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=0.755;SOR=0.929;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,17:26:99:0|1:141689017_T_C:708,0,390:141689017
chr3	141689088	rs11569249	G	A	131.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.130e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-9.130e-01;SOR=0.693;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:140,0,140
chr3	141696247	.	CAA	C	146.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.44;ReadPosRankSum=-5.490e-01;SOR=0.650;VQSLOD=5.36;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,5:11:99:120,0,150
chr3	141696353	rs7637273	G	A	657.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.220e-01;DB;DP=54;ExcessHet=3.0103;FS=1.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=-1.102e+00;SOR=0.547;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:666,0,591
chr3	141696554	rs201589027	AT	A	85.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.18;ReadPosRankSum=0.328;SOR=0.223;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:65:94,0,65
chr3	141697190	rs147759999	AAC	A	91.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:77:100,0,77
chr3	141698459	rs56184282	T	C	708.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=60;ExcessHet=3.0103;FS=3.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.922;SOR=1.220;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,27:60:99:717,0,891
chr3	141698578	rs56162837	G	A	130.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.86;ReadPosRankSum=-1.343e+00;SOR=0.551;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:139,0,532
chr3	141707772	rs79006418	C	G	171.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.950e-01;DB;DP=32;ExcessHet=3.0103;FS=1.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.35;ReadPosRankSum=-4.880e-01;SOR=0.984;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,10:32:99:180,0,552
chr3	141707791	rs76714911	T	C	198.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550e-01;DB;DP=35;ExcessHet=3.0103;FS=3.274;MQ=60.00;MQRankSum=0.00;QD=5.66;ReadPosRankSum=-5.690e-01;SOR=1.192;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,11:35:99:207,0,593
chr3	141709083	rs6440055	A	G	1957.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.78;SOR=1.739;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:731,66,0
chr3	141709185	rs146593055	T	C	100.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.90;ReadPosRankSum=0.283;SOR=0.569;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:99:109,0,351
chr3	141709505	rs61397493	C	T	435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-1.462e+00;SOR=0.676;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:444,0,572
chr3	141712126	rs80275475	A	C	70.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.65;SOR=2.303;VQSLOD=20.89;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	141713823	rs11569201	T	C	467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-1.439e+00;SOR=0.527;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:476,0,612
chr3	141718958	rs11706402	G	A	133.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=1.18;SOR=1.609;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:67:142,0,67
chr3	141721460	rs11712803	T	C	503.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=42;ExcessHet=3.0103;FS=1.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=0.038;SOR=1.091;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:512,0,569
chr3	141721713	rs78272662	G	C	436.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=0.306;SOR=0.512;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,19:48:99:445,0,739
chr3	141812759	rs9877817	G	A	9796.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150e-01;DB;DP=96;ExcessHet=3.0103;FS=0.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=0.628;SOR=0.752;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,56:96:99:1396,0,940
chr3	141884299	rs68066632	GT	G	169.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.113;SOR=1.609;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:178,0,209
chr3	141889009	rs13067957	T	G	1530.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=48;ExcessHet=3.9794;FS=10.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=0.722;SOR=0.866;VQSLOD=19.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,31:48:99:901,0,415
chr3	141892041	.	TA	T	287.66	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DP=25;ExcessHet=3.9794;FS=0.000;MQ=59.77;MQRankSum=0.546;QD=6.69;ReadPosRankSum=1.32;SOR=0.818;VQSLOD=0.342;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,4:25:24:24,0,440
chr3	141905472	.	CT	C	121.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.54;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:26:26,0,65
chr3	141906446	rs57206350	CA	C	355.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.92;MQRankSum=0.00;QD=7.74;ReadPosRankSum=0.567;SOR=0.780;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:73:78,0,73
chr3	141923506	rs9830411	C	T	4623.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.050e-01;DB;DP=53;ExcessHet=3.0103;FS=3.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=-1.118e+00;SOR=1.118;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1757,159,0
chr3	141932356	rs6440072	G	A	6308.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.830e-01;DB;DP=83;ExcessHet=3.0103;FS=3.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=-3.430e-01;SOR=0.439;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2512,248,0
chr3	142051147	rs4608715	T	C	3091.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=33;ExcessHet=3.9794;FS=1.038;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-2.600e-02;SOR=0.979;VQSLOD=6.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1176,99,0
chr3	142074103	rs7641492	G	A	134.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.20;ReadPosRankSum=0.00;SOR=0.269;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	142076059	rs3816805	A	G	524.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.360e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=2.83;SOR=0.836;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr3	142078759	rs73238159	C	T	1371.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=59.65;POSITIVE_TRAIN_SITE;QD=29.17;SOR=1.514;VQSLOD=2.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1388,141,0
chr3	142083776	rs3214978	T	TTA	493.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.160e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=2.37;SOR=0.507;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr3	142084217	rs111986801	A	G	292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.240e-01;DB;DP=24;ExcessHet=3.0103;FS=1.680;MQ=60.00;MQRankSum=0.00;QD=12.18;ReadPosRankSum=0.725;SOR=0.368;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:301,0,281
chr3	142089971	rs372983936	CA	C	266.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.212;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=59.83;MQRankSum=0.00;QD=5.12;ReadPosRankSum=-2.380e-01;SOR=0.796;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,6:26:84:84,0,260
chr3	142116151	rs2291363	A	G	2472.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=1.493;VQSLOD=20.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2489,234,0
chr3	142123841	rs2306700	C	T	3473.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=0.729;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3490,335,0
chr3	142133218	rs11714528	C	T	256.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=4.174;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:273,21,0
chr3	142135858	.	GA	G	492.47	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.473;SOR=2.115;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:9:5:102,5,0
chr3	142140511	rs11720762	T	G	152.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.40;SOR=3.258;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr3	142168331	rs1802904	C	T	8820.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.397;DB;DP=107;ExcessHet=3.0103;FS=1.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=-1.340e+00;SOR=0.827;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3330,323,0
chr3	142178144	rs2229032	C	T	4039.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=66;ExcessHet=3.9794;FS=1.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.824;SOR=0.808;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2013,198,0
chr3	142231062	.	TA	T	902.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DP=42;ExcessHet=6.9897;FS=3.953;MQ=59.85;MQRankSum=0.00;QD=7.78;ReadPosRankSum=0.277;SOR=1.133;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,14:42:99:249,0,399
chr3	142233990	rs6791816	T	C	461.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.88;SOR=5.136;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr3	142255090	rs73240314	T	C	1725.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=22;ExcessHet=3.9794;FS=0.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=1.14;SOR=0.885;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:886,66,0
chr3	142259706	rs201551475	CA	C	1893.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=32;ExcessHet=3.9794;FS=2.120;MQ=60.00;MQRankSum=0.00;QD=15.03;ReadPosRankSum=-6.230e-01;SOR=1.085;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,30:32:43:716,43,0
chr3	142272314	rs9869842	G	A	2874.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.03;DB;DP=53;ExcessHet=3.9794;FS=5.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=1.26;SOR=0.356;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1824,159,0
chr3	142274550	rs34820399	T	C	59.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.83;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:68,0,32
chr3	142277365	rs61158262	A	AAAAT	3706.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.320e-01;DB;DP=14;ExcessHet=6.9897;FS=7.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=0.249;SOR=2.187;VQSLOD=5.89;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,13:14:6:605,0,6
chr3	142277427	rs73240318	A	G	31519.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.302;DB;DP=515;ExcessHet=3.9794;FS=1.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=0.939;SOR=0.533;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,512:515:99:18295,1420,0
chr3	142277575	rs2227930	A	T	73839.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.09;DB;DP=1363;ExcessHet=3.9794;FS=1.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=1.23;SOR=0.593;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:10,1353:1363:99:39631,3807,0
chr3	142281612	rs2227928	A	G	3939.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.800e-02;DB;DP=57;ExcessHet=3.9794;FS=0.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.679;SOR=0.751;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1799,171,0
chr3	142383318	rs2272150	G	A	1271.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.291;DB;DP=25;ExcessHet=1.5490;FS=8.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=-7.500e-02;SOR=2.169;VQSLOD=19.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:827,75,0
chr3	142388513	rs10537624	AATG	A	1363.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.72;ReadPosRankSum=0.234;SOR=1.022;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr3	142389669	rs2140436	G	T	225.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=3.912;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	142405348	rs11714087	T	C	429.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=4;ExcessHet=1.5490;FS=5.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=-1.524e+00;SOR=3.180;VQSLOD=17.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr3	142408606	rs6793735	G	A	3349.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.870e-01;DB;DP=40;ExcessHet=3.0103;FS=5.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=-9.000e-02;SOR=0.313;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1219,119,0
chr3	142413407	rs6789958	C	T	7837.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.730e-01;DB;DP=93;ExcessHet=3.0103;FS=1.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=0.118;SOR=0.612;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2984,279,0
chr3	142417070	rs3773504	G	A	2925.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.870e-01;DB;DP=57;ExcessHet=1.5490;FS=2.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=1.31;SOR=1.018;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1909,171,0
chr3	142423534	rs112239407	A	G	110.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.84;SOR=2.833;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr3	142462309	.	CT	C	33.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.760e-01;DP=43;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=0.29;ReadPosRankSum=-4.900e-02;SOR=0.745;VQSLOD=5.08;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,7:43:33:33,0,790
chr3	142467310	rs56246347	C	T	2653.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.164e+00;DB;DP=55;ExcessHet=1.5490;FS=0.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=-1.525e+00;SOR=0.880;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1790,164,0
chr3	142503605	rs7621642	G	A	4370.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=94;ExcessHet=1.5490;FS=7.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=0.109;SOR=0.380;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,92:94:99:2840,233,0
chr3	142509738	rs61563090	G	GT	70.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=23.62;SOR=1.179;VQSLOD=3.24;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr3	142517163	rs9824476	G	A	865.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=14;ExcessHet=1.5490;FS=2.689;MQ=59.44;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.86;ReadPosRankSum=0.607;SOR=1.839;VQSLOD=0.785;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:473,42,0
chr3	142522753	rs56239979	A	T	1266.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.51;DB;DP=18;ExcessHet=1.5490;FS=16.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=0.283;SOR=3.992;VQSLOD=11.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:722,54,0
chr3	142523349	rs3821647	G	A	5064.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=114;ExcessHet=1.5490;FS=5.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=-6.060e-01;SOR=0.772;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,112:114:99:3281,291,0
chr3	142523555	rs4259003	G	A	1021.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.99;ReadPosRankSum=-9.670e-01;SOR=2.985;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:737,54,0
chr3	142524858	rs1132030	G	A	2169.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.120e+00;DB;DP=54;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=1.54;SOR=0.756;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1703,162,0
chr3	142537071	rs7772	C	G	1564.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.53;ReadPosRankSum=-1.158e+00;SOR=1.038;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:929,78,0
chr3	142542683	rs9846406	T	C	275.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.39;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	142561581	.	CA	C	155.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e-02;DP=11;ExcessHet=3.9794;FS=3.648;MQ=60.00;MQRankSum=0.00;QD=4.08;ReadPosRankSum=1.90;SOR=0.230;VQSLOD=4.74;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:91:0|1:142561581_CA_C:91,0,300:142561581
chr3	142561606	.	T	A	59.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DP=9;ExcessHet=3.0103;FS=6.532;MQ=60.00;MQRankSum=0.00;QD=6.58;ReadPosRankSum=0.812;SOR=0.016;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:68:0|1:142561581_CA_C:68,0,303:142561581
chr3	142567327	rs893883	G	A	3278.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.057e+00;DB;DP=54;ExcessHet=3.9794;FS=5.377;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-7.540e-01;SOR=1.143;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1727,161,0
chr3	142607487	rs1457684	C	G	802.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;DB;DP=22;ExcessHet=3.9794;FS=5.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=2.64;SOR=2.093;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:263,0,395
chr3	142720348	rs766360	G	A	862.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=6.439;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:29:307,29,0
chr3	142720730	rs3902877	T	G	1383.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=7.112;VQSLOD=23.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:738,54,0
chr3	142729433	rs2173599	T	C	594.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.520e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.33;ReadPosRankSum=-1.068e+00;SOR=0.760;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:139,0,134
chr3	142730774	rs2124541	T	G	4169.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.57;SOR=0.926;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2086,207,0
chr3	142733517	rs10935477	G	T	59.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=2.303;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
chr3	142746260	rs9835348	T	C	678.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=4.294;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:346,27,0
chr3	142752293	rs1449869	G	A	1081.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.79;SOR=3.407;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:478,42,0
chr3	142755741	rs1827159	G	A	536.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.68;SOR=5.283;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	142762487	rs6805417	T	C	639.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=2.419;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:342,30,0
chr3	142772785	rs16852921	G	A	71.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.36;SOR=2.303;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	142773738	rs10935479	C	T	3579.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=1.308;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1788,171,0
chr3	142839546	rs4149494	C	T	49.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.12;ReadPosRankSum=-1.981e+00;SOR=0.223;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,191
chr3	142985100	rs1046706	G	T	1118.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.590e-01;DB;DP=19;ExcessHet=3.9794;FS=2.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=1.87;SOR=0.416;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:249,0,240
chr3	143100626	rs13099124	C	A	192.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=3.611;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr3	143100667	rs13099123	A	G	462.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.96;SOR=4.977;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:263,18,0
chr3	143236424	rs9819535	A	G	622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.790e-01;DB;DP=10;ExcessHet=6.9897;FS=6.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=18.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:172,0,101
chr3	143370967	rs1242070	A	G	1105.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=6.736;VQSLOD=23.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:306,21,0
chr3	143371201	rs1242069	C	T	1227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=109;ExcessHet=3.0103;FS=1.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-4.190e-01;SOR=0.858;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,51:109:99:1236,0,1463
chr3	143371447	rs1242068	T	C	1601.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=3.611;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:518,39,0
chr3	143412268	rs12488981	T	C	124.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.274e+00;DB;DP=21;ExcessHet=3.0103;FS=6.067;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.92;ReadPosRankSum=0.373;SOR=0.078;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:133,0,490
chr3	143513975	rs56969315	A	G	143.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=1.69;SOR=0.527;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:152,0,101
chr3	143515899	rs11718136	A	T	217.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=-1.034e+00;SOR=0.892;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:226,0,327
chr3	143567207	rs11714060	A	G	4786.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.01;SOR=1.981;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1531,144,0
chr3	143692018	rs2279856	C	G	10527.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=125;ExcessHet=3.0103;FS=0.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=0.758;SOR=0.610;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3845,375,0
chr3	143708455	.	T	C	1790.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520e-01;DP=119;ExcessHet=3.0103;FS=4.527;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=-2.910e-01;SOR=1.131;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,66:119:99:1799,0,1344
chr3	145788467	rs6710	T	C	3107.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.647;DB;DP=35;ExcessHet=3.0103;FS=6.011;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=0.730;SOR=1.588;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1088,105,0
chr3	145788803	rs2305274	T	C	2455.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.042;DB;DP=24;ExcessHet=3.0103;FS=5.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=-1.231e+00;SOR=0.188;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:761,72,0
chr3	145790948	rs7639592	A	G	2883.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.590;DB;DP=31;ExcessHet=3.0103;FS=3.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=-1.569e+00;SOR=0.359;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1037,93,0
chr3	145791288	rs7617913	C	T	298.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.380e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=-1.834e+00;SOR=0.693;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	145794776	rs142623177	CTTTA	C	1156.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.151e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.13;ReadPosRankSum=-4.170e-01;SOR=0.693;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:145794759_A_C:90,6,0:145794759
chr3	145795559	rs9874388	A	G	219	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.272;SOR=1.402;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr3	145803138	rs1375583	T	C	2286.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.76;ReadPosRankSum=-1.789e+00;SOR=0.682;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:145803138_T_C:669,48,0:145803138
chr3	145803142	rs1375582	T	A	2185.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.023e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.12;ReadPosRankSum=-1.081e+00;SOR=0.892;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:48:1|1:145803138_T_C:669,48,0:145803138
chr3	145804415	rs3804669	C	T	67.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=2.303;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr3	145804524	rs3804668	C	A	826.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=12;ExcessHet=3.0103;FS=3.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=-4.440e-01;SOR=0.243;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:368,36,0
chr3	145809750	rs3792341	T	C	4298.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.624;DB;DP=46;ExcessHet=3.0103;FS=6.020;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.38;ReadPosRankSum=0.452;SOR=1.353;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,46:46:99:1|1:145809750_T_C:1541,137,0:145809750
chr3	145820684	rs3762691	G	A	4092.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.840e-01;DB;DP=54;ExcessHet=3.0103;FS=3.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.65;ReadPosRankSum=1.60;SOR=0.297;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1722,160,0
chr3	145821806	rs6781300	A	G	1038.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.47;SOR=6.439;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr3	145824113	rs9289715	T	C	930.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.410e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.48;ReadPosRankSum=0.120;SOR=3.690;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:318,24,0
chr3	145824478	rs9289716	A	G	8798.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.68;DB;DP=104;ExcessHet=3.0103;FS=5.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=-1.860e-01;SOR=1.092;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3286,311,0
chr3	145824504	rs7614409	G	A	6557.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.500e-01;DB;DP=72;ExcessHet=3.0103;FS=3.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=1.00;SOR=1.052;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2470,215,0
chr3	145827939	rs3804661	G	C	766.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.68;ReadPosRankSum=2.19;SOR=2.584;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:363,27,0
chr3	145828256	rs3842573	G	GT	1988.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.192e+00;DB;DP=25;ExcessHet=3.0103;FS=1.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.01;ReadPosRankSum=0.364;SOR=1.157;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:934,75,0
chr3	145838895	rs4681297	C	T	8002.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=1.183;VQSLOD=18.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2007,189,0
chr3	145841294	rs10663012	A	AAAAC	2270.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.408e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=0.607;SOR=1.003;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:47:713,47,0
chr3	145841854	rs6802384	T	C	4581.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.30;DB;DP=49;ExcessHet=3.0103;FS=4.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.27;ReadPosRankSum=-7.750e-01;SOR=1.164;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1692,147,0
chr3	145878621	rs76718163	C	T	2195.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.63;ReadPosRankSum=2.04;SOR=0.663;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,30:56:99:0|1:145878621_C_T:1181,0,1324:145878621
chr3	145878629	rs116299517	C	T	2187.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=1.71;SOR=0.652;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,30:59:99:0|1:145878621_C_T:1173,0,1390:145878621
chr3	145881102	.	ATTT	ATT,A	258.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.732;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.56;MQRankSum=0.00;QD=10.36;ReadPosRankSum=1.28;SOR=0.495;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,4,3:9:46:161,61,77,46,0,145
chr3	145912299	rs1512902	C	T	538.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DB;DP=35;ExcessHet=3.0103;FS=1.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.200;SOR=0.426;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:547,0,377
chr3	145917761	rs1061409	T	C	914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.409e+00;DB;DP=81;ExcessHet=3.0103;FS=0.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-6.040e-01;SOR=0.547;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,36:81:99:923,0,1217
chr3	145918947	rs62272383	T	C	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=29;ExcessHet=3.0103;FS=1.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.18;ReadPosRankSum=-3.510e-01;SOR=1.387;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:507,0,289
chr3	145924591	rs35080966	A	AT	2877.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230e-01;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=-8.300e-02;SOR=0.646;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,33:53:99:1173,0,648
chr3	145924632	rs3762688	C	T	1920.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.41;DB;DP=25;ExcessHet=3.0103;FS=1.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=1.43;SOR=1.224;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:916,75,0
chr3	145938481	rs3762687	T	C	177.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=1.93;SOR=1.179;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:96:186,0,96
chr3	145938528	rs3762686	C	A	1690.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.520e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.19;ReadPosRankSum=-1.368e+00;SOR=0.864;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:510,45,0
chr3	145938619	rs3762685	T	C	488.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-02;DB;DP=41;ExcessHet=3.0103;FS=6.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.378;SOR=0.701;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:497,0,467
chr3	145938782	rs9850144	C	T	36.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.27;ReadPosRankSum=0.202;SOR=0.260;VQSLOD=22.58;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:45:45,0,394
chr3	145939691	rs3804648	C	T	1439.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.670;DB;DP=8;ExcessHet=3.0103;FS=1.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=0.00;SOR=0.963;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:227,24,0
chr3	145939755	rs3840204	C	CA	868.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.01;ReadPosRankSum=0.529;SOR=1.101;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,21:31:99:0|1:145939755_C_CA:877,0,354:145939755
chr3	145939776	rs3804647	T	G	953.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=0.298;SOR=0.723;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,26:39:99:0|1:145939755_C_CA:962,0,417:145939755
chr3	145940051	rs9821768	A	C	110.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:119,0,66
chr3	145940063	rs1512889	G	A	101.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.32;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:110,0,30
chr3	146113576	rs11340803	CT	C	7736.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.340e-01;DB;DP=75;ExcessHet=3.0103;FS=2.373;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=1.19;SOR=0.871;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2648,225,0
chr3	146159764	rs4355250	T	A	496.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.920e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr3	146167174	rs146915107	A	C	412.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=35;ExcessHet=3.0103;FS=1.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-2.115e+00;SOR=0.420;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:421,0,549
chr3	146172161	rs4234358	T	A	3929.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=37;ExcessHet=3.0103;FS=7.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=0.385;SOR=1.569;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1352,111,0
chr3	146176075	rs12494007	C	T	3399.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.324;DB;DP=37;ExcessHet=3.0103;FS=1.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=-1.074e+00;SOR=0.496;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1230,111,0
chr3	146177815	rs6806535	C	T	6501.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.130e-01;DB;DP=83;ExcessHet=3.0103;FS=2.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=0.818;SOR=0.908;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2725,249,0
chr3	146246288	rs2738909	A	G	1346.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=31;ExcessHet=6.9897;FS=1.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.468;SOR=1.051;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:521,0,424
chr3	146303750	rs342902	G	A	2250.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e+00;DB;DP=52;ExcessHet=6.9897;FS=1.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-1.131e+00;SOR=0.523;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,29:52:99:807,0,696
chr3	146307371	rs343288	G	A	2252.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670e-01;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.305;SOR=0.671;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:666,0,547
chr3	146307635	rs343289	C	A	1561.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.834e+00;DB;DP=34;ExcessHet=6.9897;FS=4.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=1.02;SOR=1.551;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:583,0,490
chr3	147121751	rs6766244	C	T	1692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.636;DB;DP=86;ExcessHet=3.9794;FS=2.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-3.940e-01;SOR=0.518;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1019,0,1227
chr3	148459395	rs5182	C	T	4690.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.850e-01;DB;DP=79;ExcessHet=3.9794;FS=4.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=0.347;SOR=1.042;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2493,237,0
chr3	148546001	rs1492094	A	G	272.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=-5.980e-01;SOR=1.802;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr3	148552539	rs9830213	T	C	557.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.78;SOR=5.549;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr3	148558447	rs2291671	G	A	1455.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=61;ExcessHet=3.9794;FS=3.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=-5.620e-01;SOR=1.005;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,31:61:99:804,0,810
chr3	148562310	rs1059502	G	A	2082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.76;DB;DP=74;ExcessHet=3.9794;FS=0.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-8.680e-01;SOR=0.596;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,35:74:99:999,0,1016
chr3	148562397	rs13318851	G	C	4588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.950e-01;DB;DP=108;ExcessHet=3.9794;FS=4.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=1.97;SOR=0.476;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,56:108:99:0|1:148562397_G_C:2143,0,2051:148562397
chr3	148562399	rs13318853	G	A	4588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;DB;DP=108;ExcessHet=3.9794;FS=2.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=2.33;SOR=0.542;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:53,55:108:99:0|1:148562397_G_C:2143,0,2051:148562397
chr3	148562425	rs9835098	C	G	1527.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=122;ExcessHet=3.0103;FS=2.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-1.096e+00;SOR=0.778;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,60:122:99:1536,0,1491
chr3	148562620	rs9873003	A	G	662.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=45;ExcessHet=3.0103;FS=1.253;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-2.270e-01;SOR=0.976;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:671,0,518
chr3	148563493	rs3765131	G	A	65.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.08;ReadPosRankSum=-2.020e-01;SOR=0.321;VQSLOD=22.40;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:74:74,0,456
chr3	148563568	rs3765132	T	A	206.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.48;ReadPosRankSum=1.15;SOR=2.584;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:103,0,29
chr3	148597482	rs1032465	T	G	428.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=5;ExcessHet=6.9897;FS=3.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-5.240e-01;SOR=0.105;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:157,0,26
chr3	148597612	rs12489516	C	T	5104.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.93;SOR=1.406;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1376,135,0
chr3	148603859	rs41267865	C	A	612.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e-01;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.28;ReadPosRankSum=1.11;SOR=0.730;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:621,0,912
chr3	148709159	rs3736641	G	C	793.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=15;ExcessHet=6.9897;FS=3.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=-1.025e+00;SOR=2.342;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:320,0,155
chr3	148712255	rs9819077	A	G	72.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.02;ReadPosRankSum=-7.030e-01;SOR=0.148;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:81:81,0,328
chr3	148714025	rs3772580	C	G	1505.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=106;ExcessHet=3.0103;FS=0.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=1.61;SOR=0.691;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,58:106:99:1514,0,1103
chr3	148714841	rs10571382	TTGTG	T,TTG	1702.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.610e-01;DB;DP=21;ExcessHet=3.9794;FS=1.752;MQ=60.00;MQRankSum=0.00;QD=27.91;ReadPosRankSum=0.965;SOR=0.316;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,13,8:21:99:766,223,204,434,0,375
chr3	148714894	rs6802828	T	C	875.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.46;ReadPosRankSum=-2.210e-01;SOR=0.399;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:207,0,119
chr3	148727133	rs4938	G	A	3646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=84;ExcessHet=6.9897;FS=3.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.52;SOR=0.498;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,41:84:99:977,0,1077
chr3	148756825	rs6764352	G	A	2908.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=1.916;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:378,39,0
chr3	148758135	rs1457604	C	T	108.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.35;SOR=2.833;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr3	148759325	rs2290725	T	C	2661.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;DB;DP=77;ExcessHet=6.9897;FS=4.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=0.249;SOR=0.470;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:1065,0,910
chr3	148759560	rs2290726	A	C	520.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=0.00;SOR=1.051;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:154,0,60
chr3	148764090	rs1017489	C	T	405.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088e+00;DB;DP=11;ExcessHet=6.9897;FS=8.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.66;ReadPosRankSum=0.00;SOR=0.099;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:156,0,176
chr3	148766980	rs13317754	C	T	68.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.21;SOR=2.303;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	148786108	rs812249	C	T	6330.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=106;ExcessHet=3.9794;FS=2.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=1.71;SOR=0.864;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3228,318,0
chr3	148788893	rs746671	C	T	400.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=0.712;SOR=1.493;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr3	148788941	rs4974388	G	C	466.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=9;ExcessHet=6.9897;FS=3.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-2.800e-01;SOR=0.093;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:65:65,0,236
chr3	148858987	rs10693502	C	CTTT,CTTTT	7335.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.60;DB;DP=68;ExcessHet=3.0103;FS=3.032;MQ=59.95;MQRankSum=0.00;QD=33.49;ReadPosRankSum=0.907;SOR=0.123;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,29,33:68:99:2671,752,544,738,0,563
chr3	148859328	rs112356485	T	G	291.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.26;ReadPosRankSum=0.524;SOR=1.981;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:145,12,0
chr3	148863151	rs11718908	A	G	2723.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.636e+00;DB;DP=40;ExcessHet=3.9794;FS=0.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=2.33;SOR=0.820;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1294,120,0
chr3	148863395	rs11715291	T	G	3997.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=57;ExcessHet=3.9794;FS=2.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=1.12;SOR=0.965;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2047,171,0
chr3	148863584	rs11719052	A	G	299.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.08;SOR=2.584;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:148863584_A_G:135,9,0:148863584
chr3	148863591	rs11719054	A	C	299.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.06;SOR=2.584;VQSLOD=19.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:148863584_A_G:135,9,0:148863584
chr3	148868247	rs2254913	A	C	1321.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.11;SOR=6.932;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:296,21,0
chr3	148876261	rs772903	T	G	694.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.43;SOR=5.670;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr3	148885851	rs2681096	G	A	1119.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=3.912;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:284,21,0
chr3	148891649	rs34706715	A	G	214.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.080e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=0.00;SOR=1.230;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:126,12,0
chr3	148897498	rs146148959	T	TACACAC	1255.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=3.334;MQ=60.00;MQRankSum=0.00;QD=26.15;ReadPosRankSum=0.712;SOR=2.259;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:7:99:113,0,147
chr3	148900046	rs16861598	C	T	235.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.052e+00;DB;DP=23;ExcessHet=3.0103;FS=2.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.900;SOR=0.223;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:244,0,413
chr3	148901406	rs143522213	AC	A	237.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386e+00;DB;DP=12;ExcessHet=3.0103;FS=2.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.77;ReadPosRankSum=-9.010e-01;SOR=0.916;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:246,0,125
chr3	148903425	rs11917114	A	C	66.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=1.04;SOR=0.061;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:148903425_A_C:75,0,224:148903425
chr3	148903433	rs11924891	C	T	66.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=1.65;SOR=0.061;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:148903425_A_C:75,0,224:148903425
chr3	148906027	rs6799507	A	G	206.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.65;ReadPosRankSum=1.65;SOR=0.502;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:215,0,495
chr3	148916235	rs701753	T	A	7582.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=50.95;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.11;SOR=0.719;VQSLOD=1.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2025,176,0
chr3	148925525	rs1523515	T	C	1110.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.20;SOR=5.283;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:296,24,0
chr3	148939393	rs3736282	C	T	2255.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=38;ExcessHet=3.9794;FS=0.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=-1.690e-01;SOR=0.893;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:403,0,559
chr3	149039324	rs2015626	G	A	468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=33;ExcessHet=3.0103;FS=1.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=-1.260e-01;SOR=1.284;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:477,0,473
chr3	149042363	rs2291603	C	A	516.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=5.283;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr3	149042910	rs2291602	A	G	299.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=0.319;SOR=0.818;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:57:213,0,57
chr3	149050834	rs1493263	G	C	758.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.48;ReadPosRankSum=0.282;SOR=2.494;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:171,15,0
chr3	149050925	rs1526786	T	C	2115.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.290e-01;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.16;ReadPosRankSum=0.264;SOR=0.839;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:344,0,529
chr3	149051255	rs199549810	T	TTC	199.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.92;ReadPosRankSum=0.385;SOR=0.859;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:141,12,0
chr3	149087404	rs8479	T	C	744.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.230;DB;DP=7;ExcessHet=3.0103;FS=5.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=-6.600e-01;SOR=3.126;VQSLOD=18.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr3	149087714	rs6776940	T	C	1062.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.288e+00;DB;DP=13;ExcessHet=3.0103;FS=2.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=-8.300e-02;SOR=1.802;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:464,39,0
chr3	149093238	rs4771	A	G	5914.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.447e+00;DB;DP=76;ExcessHet=3.0103;FS=7.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=-5.000e-03;SOR=1.123;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2414,227,0
chr3	149192564	rs9793	A	G	708.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=0.697;SOR=0.804;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:154,0,105
chr3	149192851	rs143312618	G	GC	5626.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261e+00;DB;DP=93;ExcessHet=6.9897;FS=1.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=1.27;SOR=0.584;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,48:93:99:1499,0,1402
chr3	149193107	rs11710088	G	A	135.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.967;SOR=0.105;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:72,0,35
chr3	149193684	rs1802837	T	C	2966.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.000e-03;DB;DP=113;ExcessHet=3.9794;FS=0.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=1.64;SOR=0.644;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,51:113:99:1274,0,1587
chr3	149205217	rs34895718	A	G	586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.54;ReadPosRankSum=0.257;SOR=0.314;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:288,0,202
chr3	149216298	rs10935762	C	T	639.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=0.755;SOR=0.407;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:250,21,0
chr3	149216629	rs9799030	C	T	3362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=141;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=2.45;SOR=0.702;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,70:141:99:1801,0,1658
chr3	149216761	rs9799336	A	G	655.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=1.38;SOR=1.532;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:388,0,208
chr3	149220517	rs12636725	C	T	364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.43;ReadPosRankSum=-1.179e+00;SOR=0.737;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:162,0,318
chr3	149243694	rs9854499	G	C	2912.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.32;SOR=1.661;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:187,21,0
chr3	149258066	rs17787953	T	C	618.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=46;ExcessHet=3.0103;FS=6.438;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.77;SOR=1.802;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:627,0,488
chr3	149290605	rs140400179	CA	C	168.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.05;ReadPosRankSum=0.319;SOR=0.330;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:5:177,0,5
chr3	149374549	rs367657730	CTT	C	43.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;QD=6.18;SOR=0.223;VQSLOD=0.146;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,1:1:6:90,6,0
chr3	149374572	.	T	TCACA	33.92	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.92;SOR=1.609;VQSLOD=4.22;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:149374572_T_TCACA:45,3,0:149374572
chr3	149374574	rs142250733	T	A	33.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.87;SOR=1.609;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:149374572_T_TCACA:45,3,0:149374572
chr3	149374576	rs145173717	T	A	33.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.86;SOR=1.609;VQSLOD=19.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:149374572_T_TCACA:45,3,0:149374572
chr3	149374578	rs151019600	T	A	259.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.955;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=59.42;MQRankSum=0.577;QD=18.55;ReadPosRankSum=0.401;SOR=1.329;VQSLOD=-7.231e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:18:270,18,0
chr3	149375289	rs6783790	G	A	667.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.697e+00;DB;DP=13;ExcessHet=1.5490;FS=2.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=0.126;SOR=1.893;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:485,39,0
chr3	149459341	rs7633238	A	G	3853.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.04;DB;DP=55;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=-1.170e+00;SOR=1.038;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1762,165,0
chr3	149468530	rs9843784	T	G	1886.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.650e-01;DB;DP=41;ExcessHet=1.5490;FS=3.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-1.913e+00;SOR=1.066;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1291,123,0
chr3	149479301	rs954714	C	T	6191.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DB;DP=107;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.262;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3146,321,0
chr3	149481974	rs4681189	G	A	1545.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.06;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=1.65;SOR=0.339;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:935,72,0
chr3	149485293	rs7610425	T	C	8534.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.170e+00;DB;DP=158;ExcessHet=1.5490;FS=3.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=-1.241e+00;SOR=0.683;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,158:158:99:5122,473,0
chr3	149488309	rs7630033	A	G	1062.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371e+00;DB;DP=43;ExcessHet=3.9794;FS=7.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.266;SOR=0.223;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:487,0,742
chr3	149488442	rs7630153	A	G	3381.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473e+00;DB;DP=143;ExcessHet=3.9794;FS=0.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.774;SOR=0.759;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,64:143:99:1325,0,1838
chr3	149497822	rs7622440	G	A	230	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=-1.282e+00;SOR=1.402;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:118,0,29
chr3	149510262	rs4681554	A	G	1319.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.974e+00;DB;DP=14;ExcessHet=3.9794;FS=5.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=0.411;SOR=0.133;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:186,0,256
chr3	149564075	rs6440641	A	G	4107.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=58;ExcessHet=3.0103;FS=1.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-3.890e-01;SOR=0.908;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,21:58:99:412,0,995
chr3	149613232	.	ATTT	A,AT	2100.65	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.293;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.88;ReadPosRankSum=-1.272e+00;SOR=1.790;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,5,14:30:76:609,290,315,112,0,76
chr3	149678534	rs6768054	C	T	2700.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=42;ExcessHet=3.9794;FS=2.763;MQ=59.95;MQRankSum=0.957;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=0.948;SOR=1.026;VQSLOD=2.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,19:42:99:514,0,554
chr3	149679148	rs61689176	T	TA	1321.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=59.84;MQRankSum=0.00;QD=12.83;ReadPosRankSum=0.654;SOR=0.651;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,22:39:99:477,0,259
chr3	149686366	rs35842204	AAC	A	957.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=1.97;SOR=0.722;VQSLOD=6.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,26:49:99:525,0,476
chr3	149686367	rs61268501	AC	*,A	1880.06	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.19;DB;DP=49;ExcessHet=3.0103;FS=4.037;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.980;SOR=1.680;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,26,20:49:99:1197,361,396,584,0,546
chr3	149686507	rs4425205	T	C	1024.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.10;ReadPosRankSum=0.135;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:158,0,105
chr3	150128392	rs879634	G	A	7944.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.731e+00;DB;DP=149;ExcessHet=1.5490;FS=1.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=-1.716e+00;SOR=0.821;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:5184,446,0
chr3	150129171	rs3840253	A	AT	1419.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.251;DB;DP=27;ExcessHet=1.5490;FS=5.338;MQ=59.93;MQRankSum=-1.086e+00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=1.22;SOR=0.120;VQSLOD=0.118;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,27:27:81:961,81,0
chr3	150264003	rs1130834	G	C	11150.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.151e+00;DB;DP=315;ExcessHet=1.5490;FS=0.623;MQ=60.00;MQRankSum=0.00;QD=19.56;ReadPosRankSum=0.045;SOR=0.771;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:186,129:315:99:3019,0,5108
chr3	150264136	rs1049947	G	A	1681.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=31;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=1.32;SOR=0.798;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:460,0,646
chr3	150264428	rs6790726	T	C	462.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=1.38;SOR=0.990;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:71,0,69
chr3	150270077	rs12330655	C	G	1990.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=31;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=1.61;SOR=0.693;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:456,0,340
chr3	150275795	rs9818304	A	G	828.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.989e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=-1.032e+00;SOR=0.968;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:250,0,295
chr3	150276391	rs6776252	A	G	1567.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.57;ReadPosRankSum=1.70;SOR=0.779;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:319,0,490
chr3	150280206	rs5853482	CA	C	294.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=-6.740e-01;SOR=2.985;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:39:45,0,39
chr3	150280253	rs4343650	A	T	796.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=15;ExcessHet=1.5490;FS=10.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.112;SOR=3.300;VQSLOD=13.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:200,0,173
chr3	150280445	rs1132979	C	G	2049.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DB;DP=50;ExcessHet=1.5490;FS=4.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=0.919;SOR=1.163;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:529,0,698
chr3	150280506	rs5853483	GA	G	1424.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003e+00;DB;DP=31;ExcessHet=1.5490;FS=1.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=-1.068e+00;SOR=1.125;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,15:31:99:397,0,428
chr3	150321015	rs2276759	G	A	1182.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401e+00;DB;DP=25;ExcessHet=1.5490;FS=2.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=1.13;SOR=1.890;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:496,0,281
chr3	150332199	rs1568586	T	G	1557.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=23;ExcessHet=3.9794;FS=3.831;MQ=59.75;MQRankSum=0.00;QD=26.86;ReadPosRankSum=1.11;SOR=1.609;VQSLOD=4.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:473,0,226
chr3	150340114	rs2177148	A	G	2709.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=59;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=0.853;SOR=0.743;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,32:59:99:761,0,520
chr3	150384807	rs6440691	T	G	3691.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=48;ExcessHet=3.9794;FS=1.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=0.049;SOR=0.867;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:721,0,552
chr3	150420057	.	CT	C	114.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=11;ExcessHet=3.9794;FS=2.128;MQ=58.13;MQRankSum=0.191;POSITIVE_TRAIN_SITE;QD=7.17;ReadPosRankSum=0.589;SOR=0.283;VQSLOD=1.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:33:33,0,57
chr3	150420389	rs9841228	A	G	1098.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.40;ReadPosRankSum=-2.017e+00;SOR=0.420;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:184,0,177
chr3	150420438	rs9823709	T	C	1440.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=-3.540e-01;SOR=0.892;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:92:92,0,330
chr3	150420588	rs10663389	G	GTTAAA	4890.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031e+00;DB;DP=40;ExcessHet=3.0103;FS=0.821;MQ=59.97;MQRankSum=-1.310e+00;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=-1.335e+00;SOR=0.581;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,14:40:99:509,0,1050
chr3	150420606	rs9824030	T	G	2256.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.490e-01;DB;DP=47;ExcessHet=6.9897;FS=1.295;MQ=59.90;MQRankSum=-9.390e-01;QD=14.95;ReadPosRankSum=0.650;SOR=0.564;VQSLOD=0.591;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,19:47:99:610,0,689
chr3	150420608	rs71138466	G	T	2857.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.750e-01;DB;DP=47;ExcessHet=3.0103;FS=0.764;MQ=59.90;MQRankSum=0.00;QD=21.17;ReadPosRankSum=0.038;SOR=0.608;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,18:47:99:577,0,1106
chr3	150420676	rs10663390	A	AGTGT,AGT	801.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.623e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=-1.079e+00;SOR=0.826;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,2,5:8:34:230,120,152,34,0,41
chr3	150420781	rs10591523	CAG	C	1678.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=58.60;MQRankSum=-1.510e-01;POSITIVE_TRAIN_SITE;QD=26.64;ReadPosRankSum=0.984;SOR=0.592;VQSLOD=1.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,6:18:99:161,0,371
chr3	150421527	.	C	CTCCTCCTCCTCCTCCACCTCT	312.48	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=59.98;QD=24.67;SOR=3.258;VQSLOD=3.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:21:327,21,0
chr3	150603248	rs57919280	G	GAAAAGC	10823.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=87;ExcessHet=3.0103;FS=0.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=0.439;SOR=0.635;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,85:87:99:3741,131,0
chr3	150661472	rs6764540	A	T	504.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=5.136;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr3	150661495	rs6801898	T	C	273.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=-9.670e-01;SOR=0.976;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:71,0,33
chr3	150661842	rs11914988	T	G	2077.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.719;DB;DP=53;ExcessHet=6.9897;FS=2.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.831;SOR=0.492;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,28:53:99:672,0,569
chr3	150690566	rs3796240	T	C	2030.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.24;ReadPosRankSum=-6.500e-01;SOR=1.640;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:528,0,405
chr3	150804908	rs7653870	T	G	2990.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.77;DB;DP=106;ExcessHet=3.9794;FS=1.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.594;SOR=0.837;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,45:106:99:1186,0,1832
chr3	150834015	rs4680158	G	A	1007.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,156
chr3	150881774	rs17290219	A	C	1419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870e-01;DB;DP=111;ExcessHet=3.0103;FS=3.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.897;SOR=0.390;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,57:111:99:1428,0,1369
chr3	150883600	rs2567322	C	T	2858.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e-01;DB;DP=56;ExcessHet=6.9897;FS=2.669;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.179;SOR=0.911;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,37:56:99:955,0,447
chr3	150908844	rs2141630	G	A	3531.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.100e-02;DB;DP=41;ExcessHet=3.9794;FS=0.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=0.287;SOR=0.839;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,26:41:99:657,0,358
chr3	150910640	rs1231520	G	C	6492.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.316e+00;DB;DP=71;ExcessHet=3.0103;FS=3.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-3.570e-01;SOR=0.465;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2232,213,0
chr3	150932075	rs55936523	T	G	531.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=66;ExcessHet=3.0103;FS=3.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.05;ReadPosRankSum=1.32;SOR=1.235;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,23:66:99:540,0,1067
chr3	151011944	rs12492699	A	C	893.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494e+00;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-1.020e+00;SOR=0.660;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:902,0,960
chr3	151011969	rs1048408	G	A	4472.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.483e+00;DB;DP=90;ExcessHet=1.5490;FS=1.262;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=-3.520e-01;SOR=0.588;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2569,270,0
chr3	151012497	rs2242353	T	C	7574.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=106;ExcessHet=3.9794;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=-2.100e-02;SOR=0.549;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3618,318,0
chr3	151012896	rs9819885	C	T	1495.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=74;ExcessHet=3.9794;FS=2.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.022;SOR=0.521;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,34:74:99:810,0,970
chr3	151045661	rs1491980	G	C	1426.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.80;ReadPosRankSum=-3.490e-01;SOR=2.303;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:509,39,0
chr3	151046308	rs1466684	G	A	4676.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.21;DB;DP=45;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=0.261;SOR=0.455;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1527,135,0
chr3	151054115	rs10513393	G	A	203.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=0.992;SOR=0.760;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:124,0,308
chr3	151056598	rs6809699	A	C	8706.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=126;ExcessHet=3.0103;FS=0.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=-1.230e-01;SOR=0.621;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3600,377,0
chr3	151067730	rs1565574	C	T	373.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.958e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=-7.970e-01;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr3	151073033	rs7615865	T	C	1315.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e-01;DB;DP=34;ExcessHet=6.9897;FS=1.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.087;SOR=0.430;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:504,0,395
chr3	151073937	rs1994730	T	C	1924.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350e+00;DB;DP=56;ExcessHet=6.9897;FS=0.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.871;SOR=0.848;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:709,0,761
chr3	151078216	rs9856118	A	G	1445.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.468e+00;DB;DP=68;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.074;SOR=0.674;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,29:68:99:609,0,1127
chr3	151082630	rs3732762	T	A	476.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=-6.010e-01;SOR=0.634;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:69:69,0,148
chr3	151085578	rs3732764	C	A	6958.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.314;DB;DP=180;ExcessHet=6.9897;FS=1.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=1.04;SOR=0.772;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:101,79:180:99:1938,0,2659
chr3	151085842	rs3841945	AAAT	A	1914.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-02;DB;DP=56;ExcessHet=3.9794;FS=2.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=0.036;SOR=0.462;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,24:56:99:897,0,1502
chr3	151090424	rs3732765	G	A	2033.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=106;ExcessHet=3.9794;FS=3.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.69;ReadPosRankSum=2.000e-03;SOR=0.844;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,41:106:99:940,0,1526
chr3	151090604	rs9855202	G	A	546.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=16;ExcessHet=3.9794;FS=3.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=1.92;SOR=0.120;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:292,0,283
chr3	151094995	rs73158000	G	A	613.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.724;SOR=0.520;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:424,0,348
chr3	151096112	rs12497065	T	C	726.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=0.283;SOR=0.602;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:353,0,131
chr3	151096164	rs12497089	T	A	295.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=0.674;SOR=1.179;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:197,0,23
chr3	151098218	rs9868840	G	C	543.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.28;ReadPosRankSum=0.00;SOR=3.126;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr3	151100677	rs3821663	T	G	1402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=59;ExcessHet=3.9794;FS=0.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-2.220e-01;SOR=0.760;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,21:59:99:563,0,961
chr3	151101358	rs12488803	T	G	322.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=1.15;SOR=1.981;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:122,0,28
chr3	151101691	rs10935841	C	T	1061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=47;ExcessHet=3.9794;FS=7.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.664;SOR=1.565;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:641,0,655
chr3	151101746	rs12485508	C	T	718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=26;ExcessHet=3.9794;FS=1.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-3.240e-01;SOR=0.458;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,9:26:99:256,0,493
chr3	151103070	rs4603933	T	G	586.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.36;SOR=5.421;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr3	151105992	rs9289837	C	T	674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=25;ExcessHet=3.9794;FS=6.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.849;SOR=1.656;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:342,0,258
chr3	151108070	rs56194873	GT	G	445.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=14;ExcessHet=3.9794;FS=6.293;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.54;SOR=2.833;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,6:14:99:149,0,207
chr3	151128895	rs10935844	T	G	592.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=-2.410e-01;SOR=0.756;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:95:231,0,95
chr3	151131183	rs2276764	G	A	804.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.832e+00;DB;DP=18;ExcessHet=6.9897;FS=8.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-3.700e-01;SOR=0.037;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:232,0,403
chr3	151131222	rs2276765	A	G	434.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.593e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=-9.300e-01;SOR=0.859;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:208,0,136
chr3	151143354	rs10653830	T	TTG	2560.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.613;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.01;ReadPosRankSum=1.08;SOR=1.585;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:78:892,78,0
chr3	151143447	rs6440742	G	T	7132.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=1.440;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2311,221,0
chr3	151150729	rs375172215	CAA	CA,C	761.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.796;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=1.74;SOR=2.891;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,9,8:18:99:446,177,153,186,0,194
chr3	151154666	rs2172250	T	C	9468.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=0.720;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3001,297,0
chr3	151155620	rs6781302	G	A	10492.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.70;ReadPosRankSum=2.09;SOR=0.449;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,117:118:99:3503,308,0
chr3	151156611	rs3975347	GAT	G	257.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.06;SOR=4.174;VQSLOD=5.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr3	151158184	rs937126	A	T	2628.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.09;SOR=4.438;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:508,45,0
chr3	151158265	rs937125	G	A	7037.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=32.73;SOR=2.060;VQSLOD=5.85;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1817,168,0
chr3	151158502	rs10663807	T	TAG	3329.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=5.756;VQSLOD=7.13;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:850,57,0
chr3	151165678	rs9871952	T	C	3930.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=67;ExcessHet=3.9794;FS=0.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=1.16;SOR=0.629;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,25:67:99:616,0,1128
chr3	151166422	rs6798252	C	T	6693.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;DB;DP=115;ExcessHet=3.9794;FS=2.539;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=0.013;SOR=0.856;VQSLOD=6.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,56:115:99:1514,0,1495
chr3	151171439	rs7619322	A	C	3853.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;DB;DP=73;ExcessHet=3.9794;FS=8.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=0.131;SOR=0.365;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,30:73:99:705,0,1127
chr3	151171542	rs7621591	A	G	2186.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.170;SOR=0.791;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:420,0,426
chr3	151283646	rs7631281	T	C	171.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:71,0,68
chr3	151283691	rs9842591	C	A	500.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=0.623;SOR=0.200;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:166,0,161
chr3	151458839	rs1520145	C	A	63.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=0.431;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,74
chr3	151531894	rs2293004	C	T	2057.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.433e+00;DB;DP=78;ExcessHet=3.9794;FS=2.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-5.970e-01;SOR=0.495;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,33:78:99:800,0,1240
chr3	151535422	rs2271942	G	A	720.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=5.892;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:487,36,0
chr3	151535506	rs13098608	G	T	60.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,102
chr3	151537922	rs2271941	T	A	179.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.41;ReadPosRankSum=0.524;SOR=1.179;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:77,0,32
chr3	151537985	rs8193028	T	C	97.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=1.01;SOR=0.495;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:106,0,151
chr3	151538039	rs2271940	T	C	1024.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.658e+00;DB;DP=18;ExcessHet=1.5490;FS=2.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.47;ReadPosRankSum=-1.035e+00;SOR=0.180;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,13:18:99:354,0,150
chr3	151538304	rs34039248	CT	C,CTTTT	391.58	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.334;DB;DP=12;ExcessHet=3.0103;FS=2.576;MQ=59.37;MQRankSum=0.015;QD=16.32;ReadPosRankSum=0.751;SOR=0.269;VQSLOD=-9.930e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,3,5:12:43:140,86,146,43,0,183
chr3	151542408	rs148745568	AAAAC	A	2444.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=6.630;VQSLOD=6.66;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1125,75,0
chr3	151542737	rs13098550	G	A	2681.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.25;SOR=5.196;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1526,120,0
chr3	151542749	rs151253803	CTATT	C	2465.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=6.666;VQSLOD=7.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1450,99,0
chr3	151542829	rs13098426	C	T	744.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.46;SOR=4.615;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:505,39,0
chr3	151545236	rs10579932	TAA	T	79.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=2.303;VQSLOD=5.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	151545318	rs2410837	A	T	1780.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.95;SOR=4.977;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:42:1|1:151545318_A_T:630,42,0:151545318
chr3	151545321	rs11306821	GT	G	1780.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=5.136;VQSLOD=6.95;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:151545318_A_T:630,42,0:151545318
chr3	151545323	rs62272918	T	G	1780.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.71;SOR=5.136;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:151545318_A_T:630,42,0:151545318
chr3	151545601	rs1803155	G	A	5199.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=0.705;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2250,218,0
chr3	151546041	rs1042201	G	A	534.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.72;ReadPosRankSum=-5.450e-01;SOR=2.303;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:134,0,145
chr3	151986262	rs17433672	C	T	767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=67;ExcessHet=3.0103;FS=4.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-1.511e+00;SOR=1.542;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,25:67:99:776,0,1200
chr3	152880347	rs11556166	C	T	1909.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.880e-01;DB;DP=44;ExcessHet=3.9794;FS=1.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-5.050e-01;SOR=1.329;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:756,0,712
chr3	153203761	.	A	T	621.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DP=42;ExcessHet=3.0103;FS=1.571;MQ=60.00;MQRankSum=0.00;QD=14.79;ReadPosRankSum=0.491;SOR=0.304;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,21:42:99:630,0,565
chr3	153219952	rs7614444	T	C	898.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=3.690;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:23:223,23,0
chr3	153839866	rs12493885	G	C	12144.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.569;DB;DP=163;ExcessHet=3.0103;FS=6.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=1.11;SOR=0.332;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5259,489,0
chr3	153839959	rs59508481	C	T	23121.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.880e-01;DB;DP=217;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.36;ReadPosRankSum=-4.900e-02;SOR=0.701;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,217:217:99:1|1:153839959_C_T:9749,656,0:153839959
chr3	153839960	rs12497267	T	C	23121.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=218;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.20;ReadPosRankSum=0.255;SOR=0.711;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,218:218:99:1|1:153839959_C_T:9749,656,0:153839959
chr3	153842161	.	CT	C	489.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.124e+00;DP=21;ExcessHet=6.9897;FS=3.405;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.12;ReadPosRankSum=-1.270e-01;SOR=0.375;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,5:21:43:43,0,228
chr3	153847582	rs1626280	T	A	2516.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.890e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-6.220e-01;SOR=0.986;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:744,63,0
chr3	153867036	rs138333351	AAATT	A	1044.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.920e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=-3.660e-01;SOR=5.058;VQSLOD=2.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr3	153870407	rs1727957	G	A	107.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=2.833;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	153870511	rs1727956	G	A	963.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.718e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=-8.160e-01;SOR=1.387;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:213,15,0
chr3	153870883	rs1470663	A	G	911.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=-1.645e+00;SOR=2.226;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:426,33,0
chr3	153970704	rs2307750	CTT	C	1796.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=21;ExcessHet=3.9794;FS=2.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.34;ReadPosRankSum=2.07;SOR=0.340;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,21:21:63:945,63,0
chr3	153970796	rs355752	A	G	6761.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.59;DB;DP=85;ExcessHet=3.0103;FS=0.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=-2.911e+00;SOR=0.767;VQSLOD=22.37;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2925,254,0
chr3	153972500	rs355749	T	C	8402.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.969;DB;DP=116;ExcessHet=3.0103;FS=0.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.34;ReadPosRankSum=0.583;SOR=0.653;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3452,347,0
chr3	153994502	rs355787	T	C	3877.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.990e-01;DB;DP=49;ExcessHet=3.0103;FS=3.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=-9.750e-01;SOR=1.032;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1414,147,0
chr3	154002597	rs62276969	T	C	1309.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=110;ExcessHet=3.0103;FS=0.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.371;SOR=0.796;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,48:110:99:1318,0,1596
chr3	154007682	rs355758	G	C	1943.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.026;DB;DP=24;ExcessHet=3.0103;FS=6.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=0.729;SOR=0.194;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:822,72,0
chr3	154010515	.	A	AAC	1251.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.22;ReadPosRankSum=0.483;SOR=1.819;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:14:99:150,0,137
chr3	154012881	rs355763	C	T	3519.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-3.510e-01;SOR=0.781;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1483,135,0
chr3	154013480	rs355764	A	T	490.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.006e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=1.01;SOR=0.693;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr3	154018887	rs9438	G	C	3108.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.76;DB;DP=49;ExcessHet=3.9794;FS=4.504;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.81;ReadPosRankSum=0.592;SOR=1.039;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1722,147,0
chr3	154021063	rs355756	G	A	1884.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=2.22;SOR=0.960;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,26:28:35:909,35,0
chr3	154024165	rs355754	T	C	1178.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.39;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.67;ReadPosRankSum=1.47;SOR=0.729;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:666,54,0
chr3	154032717	rs5853690	G	GA	833.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.78;ReadPosRankSum=-1.380e-01;SOR=1.244;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr3	154801832	rs56208271	G	A	194.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=-1.036e+00;SOR=1.402;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:103,0,33
chr3	154833985	.	TA	T	725.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=1.15;SOR=3.912;VQSLOD=4.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:290,33,0
chr3	154834379	.	GTA	G	709.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.510e-01;DP=30;ExcessHet=6.9897;FS=2.715;MQ=60.00;MQRankSum=0.00;QD=5.63;ReadPosRankSum=0.026;SOR=1.008;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,4:30:64:64,0,831
chr3	154855722	rs142771935	ACTGT	A	72.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.19;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:56:81,0,56
chr3	154858158	rs28758831	C	T	777.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.09;ReadPosRankSum=1.19;SOR=0.616;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,11:32:99:295,0,588
chr3	154862390	rs6797911	T	A	210.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=1.50;SOR=1.863;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	155205993	rs368444721	C	CT	801.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.833;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.37;SOR=1.096;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,17:36:99:333,0,351
chr3	155212325	rs3214639	G	GA	2791.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.651e+00;DB;DP=31;ExcessHet=3.0103;FS=1.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=-1.015e+00;SOR=1.094;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,19:31:99:489,0,281
chr3	155241593	rs9840061	A	G	2252.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.502e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=1.21;SOR=0.941;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:226,0,386
chr3	155241740	rs9840234	A	G	7597.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.010e-01;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=0.874;SOR=0.715;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,48:98:99:992,0,1114
chr3	155241885	rs6440996	G	A	1093.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.240e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.800;SOR=0.981;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:529,39,0
chr3	155241900	rs6440997	G	A	697.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.400e-02;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=0.705;SOR=0.927;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:447,33,0
chr3	155267440	rs3851357	G	A	95.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:104,0,26
chr3	155267460	rs359542	T	A	568.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=2.97;SOR=1.519;VQSLOD=22.79;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
chr3	155271825	rs359549	G	A	4365.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.69;DB;DP=62;ExcessHet=3.9794;FS=0.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=0.492;SOR=0.759;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2000,186,0
chr3	155272203	rs359550	G	A	254.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr3	155285836	rs498378	C	G	203.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=1.981;VQSLOD=18.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr3	155301264	rs9289957	T	C	573.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=34;ExcessHet=3.0103;FS=1.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=1.15;SOR=0.368;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,22:34:99:582,0,318
chr3	155314034	rs359569	A	G	6270.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.430e-01;DB;DP=91;ExcessHet=3.0103;FS=5.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=0.207;SOR=0.382;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2702,272,0
chr3	155314296	rs359570	A	G	1277.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.565e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.43;ReadPosRankSum=0.449;SOR=1.314;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:374,30,0
chr3	155611557	rs6441026	T	G	1798.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.65;SOR=4.712;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:564,42,0
chr3	155623831	rs67122310	C	CT	694.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.16;ReadPosRankSum=0.964;SOR=0.465;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,17:18:26:427,26,0
chr3	155628877	rs10936021	T	G	1795.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.47;DB;DP=38;ExcessHet=1.5490;FS=0.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=-7.430e-01;SOR=0.869;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1304,114,0
chr3	155632019	rs2320318	G	A	1161.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.650e-01;DB;DP=22;ExcessHet=1.5490;FS=1.829;MQ=59.98;MQRankSum=1.14;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=0.141;SOR=1.280;VQSLOD=0.666;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,22:22:66:802,66,0
chr3	155637190	rs1356252	A	G	2603.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=47;ExcessHet=1.5490;FS=9.210;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=-4.540e-01;SOR=1.659;VQSLOD=4.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1552,141,0
chr3	155639959	rs3772117	A	G	960.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.940e-01;DB;DP=21;ExcessHet=1.5490;FS=1.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.64;ReadPosRankSum=-1.501e+00;SOR=0.342;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:654,63,0
chr3	155649472	rs201331591	T	TTAA	152.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579e+00;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=58.15;MQRankSum=0.00;QD=21.79;ReadPosRankSum=-1.006e+00;SOR=1.179;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:6:65,6,0
chr3	155654432	rs3772113	T	A	984.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=6.869;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:267,24,0
chr3	155991348	rs1160221	G	T	4490.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049e+00;DB;DP=114;ExcessHet=1.5490;FS=1.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=0.352;SOR=0.824;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,46:114:99:1094,0,1816
chr3	155991410	rs13093003	C	G	764.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.857;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-1.570e+00;SOR=0.771;VQSLOD=1.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,31:76:99:773,0,1096
chr3	156009614	rs2290165	A	G	862.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.753e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=1.14;SOR=0.489;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:416,36,0
chr3	156009925	rs1551066	C	T	2930.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=99;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.707;SOR=0.709;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,51:99:99:1383,0,1211
chr3	156139099	rs816543	G	A	1090.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.23;SOR=6.593;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:291,21,0
chr3	156175109	rs34093583	C	CTT	4867.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=47;ExcessHet=3.0103;FS=0.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.65;ReadPosRankSum=0.960;SOR=0.573;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,47:47:99:2110,141,0
chr3	156175167	rs2293194	G	A	5515.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=45;ExcessHet=3.0103;FS=2.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=-1.126e+00;SOR=0.419;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:156175167_G_A:2025,135,0:156175167
chr3	156175168	rs2293195	G	A	5515.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.730e-01;DB;DP=45;ExcessHet=3.0103;FS=2.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=-1.340e+00;SOR=0.428;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:156175167_G_A:2025,135,0:156175167
chr3	156177828	rs2272114	T	C	655.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.78;ReadPosRankSum=0.524;SOR=2.303;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:189,15,0
chr3	156231893	rs12054056	A	G	424.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.210;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.67;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr3	156232688	rs34282952	C	T	103.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=19.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:112,0,72
chr3	156232749	rs3817366	A	G	1151.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=18;ExcessHet=3.9794;FS=2.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=0.508;SOR=0.177;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:782,54,0
chr3	156232751	rs3817367	T	G	297.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-4.740e-01;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:306,0,313
chr3	156233270	rs11351525	CA	C	155.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.99;SOR=3.912;VQSLOD=6.51;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chr3	156234268	rs4295133	A	G	323.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=-1.006e+00;SOR=1.802;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr3	156234338	rs4470463	T	C	372.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.15;ReadPosRankSum=0.967;SOR=3.258;VQSLOD=18.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:304,21,0
chr3	156241949	rs7619602	T	C	140.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=-6.740e-01;SOR=1.329;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr3	156249407	rs2280030	G	C	77.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.58;ReadPosRankSum=-9.920e-01;SOR=0.283;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:86:86,0,227
chr3	156266642	rs6809188	C	T	4821.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.11;SOR=0.934;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1325,135,0
chr3	156273170	rs11389480	T	TA	1718.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.572;DB;DP=23;ExcessHet=3.0103;FS=1.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-6.000e-01;SOR=0.320;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,14:23:99:331,0,201
chr3	156395329	rs345986	G	T	1236.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636e+00;DB;DP=15;ExcessHet=3.9794;FS=3.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=0.506;SOR=0.269;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:172,0,256
chr3	156399180	rs3851992	G	A	35.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.710e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.35;ReadPosRankSum=1.30;SOR=0.307;VQSLOD=22.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,3:15:44:44,0,362
chr3	156411732	rs193197	A	G	1324.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=18;ExcessHet=3.9794;FS=2.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=0.264;SOR=1.708;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:156,0,366
chr3	156413615	rs10631452	C	CT,CTTT	1032.31	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.558e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.07;ReadPosRankSum=0.594;SOR=0.504;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,4,5:11:48:222,98,107,48,0,134
chr3	156413918	rs344016	T	C	548.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.01;SOR=5.283;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr3	156421525	rs34277251	G	T	257.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-1.459e+00;SOR=0.693;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:266,0,276
chr3	156422307	rs344052	T	C	331.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=4.615;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr3	156431750	rs61733487	A	G	5900.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=49.15;POSITIVE_TRAIN_SITE;QD=34.71;SOR=1.582;VQSLOD=-5.902e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1751,156,0
chr3	156544584	rs344071	C	T	15173.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.143e+00;DB;DP=155;ExcessHet=3.0103;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=2.02;SOR=0.461;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:5304,465,0
chr3	156605929	rs4680312	C	T	335.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=4.615;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:352,27,0
chr3	156645196	.	AT	A	215.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.700e-01;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.66;MQRankSum=0.00;QD=5.98;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,4:18:57:57,0,321
chr3	156697097	rs6780427	G	A	2505.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.032;DB;DP=46;ExcessHet=3.9794;FS=0.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.653;SOR=0.630;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1478,137,0
chr3	156742775	rs11715321	C	T	261.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.67;ReadPosRankSum=-3.190e-01;SOR=2.833;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr3	156864398	rs370594663	TA	T	966.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.530e-01;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.587;SOR=0.763;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:22:99:151,0,161
chr3	157004323	rs4680353	A	C	4512.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.906;DB;DP=105;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=-2.990e-01;SOR=0.685;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3177,315,0
chr3	157004601	rs6793166	A	G	150.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=3.258;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr3	157080991	rs35271163	GA	G	165.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.02;ReadPosRankSum=1.38;SOR=1.473;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:7:105,0,7
chr3	157082082	rs3833585	C	CAA	4848.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.510e-01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.19;ReadPosRankSum=0.712;SOR=0.666;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1695,117,0
chr3	157131495	rs9837655	T	G	503.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.25;ReadPosRankSum=0.00;SOR=2.985;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr3	157146005	rs9289983	G	A	471.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.47;ReadPosRankSum=0.272;SOR=1.292;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:299,24,0
chr3	157146307	rs1456099	A	T	4246.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=64;ExcessHet=3.9794;FS=4.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=0.141;SOR=0.444;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2033,192,0
chr3	157154861	rs2305619	A	G	10518.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.97;ReadPosRankSum=-4.900e-02;SOR=0.690;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,148:150:99:4238,398,0
chr3	157155314	rs3816527	C	A	9452.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.931e+00;DB;DP=127;ExcessHet=3.0103;FS=4.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=1.08;SOR=0.462;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3813,381,0
chr3	157155828	rs62278648	A	G	192.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.88;SOR=2.303;VQSLOD=19.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:173,15,0
chr3	157160061	rs2316706	A	C	402.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=4.804;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr3	157188045	rs1456113	A	G	1304.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.081e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=0.123;SOR=0.721;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:584,60,0
chr3	157188378	rs1011060	C	T	3251.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.625e+00;DB;DP=73;ExcessHet=1.5490;FS=0.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.276;SOR=0.855;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2266,218,0
chr3	157188457	rs5853785	TA	T	2347.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.463;DB;DP=34;ExcessHet=3.9794;FS=1.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=-2.160e-01;SOR=0.495;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,34:34:99:1|1:157188457_TA_T:1483,102,0:157188457
chr3	157188466	rs1550651	C	T	2326.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.273e+00;DB;DP=33;ExcessHet=3.9794;FS=1.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.09;ReadPosRankSum=-3.560e-01;SOR=0.571;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:157188457_TA_T:1459,99,0:157188457
chr3	157206699	.	TTCTCTCTCTCTC	T,TTCTCTC	813.07	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.20;DP=8;ExcessHet=3.0103;FS=0.000;MQ=58.64;MQRankSum=0.152;QD=20.85;ReadPosRankSum=-1.011e+00;SOR=0.732;VQSLOD=0.504;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,3:8:86:297,105,86,173,0,166
chr3	157287342	rs12489204	A	G	2593.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.910e-01;DB;DP=74;ExcessHet=3.9794;FS=0.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-2.770e-01;SOR=0.754;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:973,0,877
chr3	157288885	rs16827846	T	C	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.506;DB;DP=36;ExcessHet=3.0103;FS=3.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=-7.490e-01;SOR=0.250;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:567,0,430
chr3	157289936	rs1373118	G	A	830.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=0.619;SOR=2.019;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:561,42,0
chr3	157295937	rs11412238	C	CT	540.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.405;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=59.83;MQRankSum=0.00;QD=14.21;ReadPosRankSum=-2.040e-01;SOR=1.609;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,13:15:11:303,0,11
chr3	157318257	rs4395360	C	T	503.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.405;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,155
chr3	157817517	rs9833383	A	G	1500.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.06;SOR=5.728;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:531,36,0
chr3	157820423	rs4462902	C	T	5025.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=3.319;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1322,122,0
chr3	157822669	rs1915940	T	C	2565.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.89;SOR=1.095;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:850,90,0
chr3	157823100	rs4472013	T	C	471.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.47;SOR=1.609;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:267,24,0
chr3	157841531	rs6789448	G	A	2937.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.852e+00;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=2.37;SOR=0.950;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:936,90,0
chr3	157849957	rs1609526	C	T	3526.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=1.07;SOR=0.629;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1389,126,0
chr3	158015635	rs1730045	A	G	296.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=-4.140e-01;SOR=0.346;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:109,0,107
chr3	158072776	rs5853823	TA	T	1165.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DB;DP=53;ExcessHet=3.9794;FS=0.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=1.23;SOR=0.575;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,28:53:99:618,0,523
chr3	158300732	rs2566341	A	G	3017.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=1.516;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:839,84,0
chr3	158308875	rs2566339	T	C	3622.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=0.874;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1213,114,0
chr3	158308948	rs11314613	CT	C,CTT	599.49	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.145;DB;DP=27;ExcessHet=3.9794;FS=8.645;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-2.220e-01;SOR=0.152;VQSLOD=4.92;culprit=FS	GT:AD:DP:GQ:PL	1/2:7,6,14:27:1:202,152,365,1,0,114
chr3	158310391	rs34234841	CAGTT	C	4784.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=109;ExcessHet=0.4576;FS=5.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.87;ReadPosRankSum=1.57;SOR=1.909;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,108:109:99:4801,319,0
chr3	158316192	rs11336788	AT	A	136.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.23;SOR=1.981;VQSLOD=5.53;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:153,15,0
chr3	158318015	rs2639656	C	T	1204.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.85;SOR=3.611;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:456,39,0
chr3	158449965	rs6441223	T	C	5652.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.54;DB;DP=68;ExcessHet=3.0103;FS=2.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=1.04;SOR=1.027;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2346,204,0
chr3	158450080	rs7621322	T	C	3933.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=102;ExcessHet=6.9897;FS=1.354;MQ=60.00;MQRankSum=0.00;QD=12.81;ReadPosRankSum=2.00;SOR=0.790;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,44:102:99:1149,0,1394
chr3	158450151	rs7609656	C	T	3979.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171e+00;DB;DP=80;ExcessHet=6.9897;FS=0.435;MQ=60.00;MQRankSum=0.00;QD=13.87;ReadPosRankSum=-1.081e+00;SOR=0.745;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,48:80:99:1253,0,836
chr3	158450169	rs147016103	C	G	5216.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=88;ExcessHet=6.9897;FS=0.872;MQ=60.00;MQRankSum=0.00;QD=17.16;ReadPosRankSum=0.398;SOR=0.751;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,50:88:99:0|1:158450169_C_G:2006,0,1727:158450169
chr3	158450178	rs6786423	A	G	7958.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.170e-01;DB;DP=88;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=1.99;SOR=0.723;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,51:88:99:0|1:158450169_C_G:2040,0,1666:158450169
chr3	158450298	rs73015649	C	G	2104.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;DB;DP=72;ExcessHet=6.9897;FS=1.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.242;SOR=0.873;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:909,0,836
chr3	158450417	rs6441224	T	C	1221.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=23;ExcessHet=3.9794;FS=2.725;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.211;SOR=0.340;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:342,0,272
chr3	158451654	rs73015654	G	A	3098.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=63;ExcessHet=6.9897;FS=1.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-1.960e-01;SOR=0.572;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,36:63:99:865,0,718
chr3	158451882	rs73015655	A	C	2635.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=40;ExcessHet=6.9897;FS=1.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.47;ReadPosRankSum=0.572;SOR=0.830;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:650,0,483
chr3	158451932	rs73015657	G	A	1586.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.310e-01;DB;DP=30;ExcessHet=6.9897;FS=2.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-4.350e-01;SOR=1.091;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:507,0,338
chr3	158520011	rs28364680	C	T	5141.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620e-01;DB;DP=173;ExcessHet=3.9794;FS=1.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.741;SOR=0.810;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,100:173:99:2617,0,1748
chr3	158520483	rs2713736	A	G	2897.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.790e-01;DB;DP=56;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=-7.050e-01;SOR=0.657;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:713,0,888
chr3	158531974	rs41272621	A	T	1117.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=24;ExcessHet=3.9794;FS=3.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=1.44;SOR=1.235;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:280,0,406
chr3	158537415	rs146160361	CTTTTT	C,CTTTT	2397.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.392;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.17;ReadPosRankSum=1.74;SOR=2.103;VQSLOD=5.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,11,10:21:99:663,231,387,461,0,432
chr3	158537443	rs3765083	A	G	2932.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=40;ExcessHet=1.5490;FS=1.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=-4.380e-01;SOR=0.538;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:833,0,552
chr3	158541077	rs41272627	C	T	1949.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=76;ExcessHet=3.9794;FS=0.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=1.20;SOR=0.598;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,38:76:99:987,0,983
chr3	158545209	.	GT	G	323.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.270e-01;DP=41;ExcessHet=6.9897;FS=3.259;MQ=60.00;MQRankSum=0.00;QD=3.95;ReadPosRankSum=1.78;SOR=0.358;VQSLOD=4.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,10:41:99:146,0,397
chr3	158546552	rs75704067	ATATT	A	676.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;DB;DP=22;ExcessHet=3.9794;FS=3.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=-4.490e-01;SOR=2.043;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,9:22:99:339,0,805
chr3	158546849	rs78482130	G	GT	1496.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560e-01;DB;DP=37;ExcessHet=3.9794;FS=3.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=0.537;SOR=0.379;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,21:37:99:594,0,440
chr3	158787632	rs72458002	TTG	T	425.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.249;DB;DP=12;ExcessHet=3.9794;FS=3.310;MQ=59.85;MQRankSum=0.00;QD=9.47;ReadPosRankSum=0.871;SOR=0.162;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,11:12:28:276,28,0
chr3	158963503	rs34415272	G	C	447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=0.211;SOR=0.560;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:456,0,266
chr3	158963599	rs78239689	C	G	431.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=46;ExcessHet=3.0103;FS=2.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=2.38;SOR=1.096;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,17:46:99:440,0,753
chr3	158970714	rs1020470	T	C	11660.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.609e+00;DB;DP=153;ExcessHet=3.0103;FS=3.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-1.795e+00;SOR=0.415;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4769,459,0
chr3	158980193	rs1449008	T	A	456.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=1.28;SOR=3.767;VQSLOD=16.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr3	158980279	rs1449007	A	G	1385.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.89;ReadPosRankSum=-1.254e+00;SOR=3.202;VQSLOD=18.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:558,39,0
chr3	158980745	rs2621309	G	C	786.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=0.674;SOR=3.816;VQSLOD=17.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr3	158991724	rs2621285	A	T	1902.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.547;DB;DP=31;ExcessHet=3.9794;FS=0.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=-2.400e-01;SOR=0.566;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:886,93,0
chr3	159482089	rs6763138	C	G	690.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=1.69;SOR=0.437;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,15:25:99:500,0,339
chr3	159604214	rs33055	T	C	2304.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.15;ReadPosRankSum=0.448;SOR=0.957;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:824,71,0
chr3	159733600	rs589545	G	A	549.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.023e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.46;MQRankSum=0.605;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-1.750e-01;SOR=0.458;VQSLOD=1.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:166,0,230
chr3	159733692	rs491966	T	C	1435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=40;ExcessHet=3.9794;FS=3.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-2.440e-01;SOR=1.109;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:484,0,483
chr3	159736572	rs2366644	T	G	67.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.53;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:75,0,33
chr3	159736893	rs2647930	T	C	3204.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347e+00;DB;DP=83;ExcessHet=3.9794;FS=2.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=1.25;SOR=0.539;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1132,0,977
chr3	159737076	rs2647931	G	A	2802.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=101;ExcessHet=3.9794;FS=0.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=0.453;SOR=0.772;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,43:101:99:1025,0,1405
chr3	159738355	rs62270442	C	G	2987.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499e+00;DB;DP=132;ExcessHet=3.9794;FS=3.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=1.38;SOR=0.947;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,65:132:99:1591,0,1713
chr3	159738657	rs507822	T	C	1770.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.60;ReadPosRankSum=0.874;SOR=1.196;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:648,45,0
chr3	159738697	rs507927	A	G	1019.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.120e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.00;ReadPosRankSum=0.712;SOR=2.303;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:287,24,0
chr3	159744261	rs2279741	G	A	1919.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.425e+00;DB;DP=38;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=0.061;SOR=0.635;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:377,0,714
chr3	159744277	rs2936300	C	T	4541.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.048e+00;DB;DP=47;ExcessHet=3.0103;FS=3.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.28;ReadPosRankSum=1.98;SOR=0.389;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1674,141,0
chr3	159744352	rs2279742	C	T	5915.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=75;ExcessHet=3.0103;FS=2.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=-1.790e+00;SOR=0.921;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2134,223,0
chr3	159744438	rs2914119	C	T	10325.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DB;DP=84;ExcessHet=3.0103;FS=6.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.94;ReadPosRankSum=0.343;SOR=0.423;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,84:84:99:1|1:159744438_C_T:3758,256,0:159744438
chr3	159744440	rs2936301	C	T	10325.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.00;DB;DP=81;ExcessHet=3.0103;FS=5.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=0.500;SOR=0.424;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,81:81:99:1|1:159744438_C_T:3758,256,0:159744438
chr3	160142810	.	ATG	A	865.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DP=28;ExcessHet=6.9897;FS=4.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-8.380e-01;SOR=1.696;VQSLOD=6.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,7:28:99:147,0,567
chr3	160248921	.	T	C	50.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.38;ReadPosRankSum=-2.530e-01;SOR=0.307;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:59:59,0,143
chr3	160474540	.	C	CGT	222.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.98;ReadPosRankSum=0.802;SOR=0.275;VQSLOD=5.41;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,6:14:99:124,0,186
chr3	160679744	rs7629001	A	T	1227.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.55;ReadPosRankSum=0.311;SOR=2.147;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
chr3	160945225	.	A	AT	210.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=7;ExcessHet=6.9897;FS=1.557;MQ=60.00;MQRankSum=0.00;QD=7.26;ReadPosRankSum=1.23;SOR=1.112;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:7:19:19,0,58
chr3	161146849	rs61008936	GT	G	252.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=59.41;MQRankSum=0.00;QD=14.05;ReadPosRankSum=0.413;SOR=0.941;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:41:69,0,41
chr3	161147223	.	G	C	38.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DP=73;ExcessHet=3.0103;FS=4.086;MQ=47.98;MQRankSum=-4.680e-01;QD=0.52;ReadPosRankSum=-1.818e+00;SOR=1.845;VQSLOD=-3.393e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,6:73:47:0|1:161147204_G_A:47,0,2837:161147204
chr3	161147228	.	C	T	44.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.040e-01;DP=70;ExcessHet=3.0103;FS=4.084;MQ=48.72;MQRankSum=-6.410e-01;QD=0.63;ReadPosRankSum=-1.847e+00;SOR=1.773;VQSLOD=-3.215e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:64,6:70:53:0|1:161147204_G_A:53,0,2733:161147204
chr3	161216812	rs1506481	G	A	336.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=-1.133e+00;SOR=0.610;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:71,0,76
chr3	161216845	rs1506482	C	T	393.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.981;DB;DP=5;ExcessHet=6.9897;FS=3.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=0.00;SOR=0.100;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:27:27,0,142
chr3	161216860	rs1506483	T	C	415.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.400e-02;DB;DP=7;ExcessHet=6.9897;FS=2.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.267;SOR=0.141;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:57:57,0,173
chr3	161216912	rs1506484	T	C	1196.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.00;SOR=0.687;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:353,0,416
chr3	161217218	rs41386047	A	G	421.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=0.566;SOR=0.859;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:124,0,139
chr3	161221705	rs3921595	A	C	3082.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DB;DP=94;ExcessHet=6.9897;FS=1.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=-1.690e-01;SOR=0.801;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,49:94:99:1012,0,1118
chr3	161221726	rs202021352	C	A	1038.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.110e-01;DB;DP=70;ExcessHet=3.0103;FS=1.048;MQ=60.00;MQRankSum=0.00;QD=14.83;ReadPosRankSum=0.489;SOR=0.941;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1047,0,823
chr3	164714532	rs4855271	C	T	2137.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.53;SOR=4.804;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:520,42,0
chr3	164726959	rs74407025	A	G	254.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=-9.470e-01;SOR=1.022;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,7:12:99:0|1:164726959_A_G:263,0,167:164726959
chr3	164733721	rs2290738	G	A	4784.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=2.076;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1352,120,0
chr3	164748665	rs11452619	C	CA	306.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=18.01;ReadPosRankSum=0.812;SOR=0.776;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:2:158,0,2
chr3	164751319	rs7611384	T	A	576.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=2.09;SOR=0.544;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:585,0,687
chr3	164758630	rs13099130	G	A	762.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.664;DB;DP=7;ExcessHet=3.9794;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=0.736;SOR=2.303;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:294,21,0
chr3	164760510	rs13067742	A	C	398.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=-4.310e-01;SOR=1.911;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
chr3	164760771	rs12381230	T	C	2292.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=40;ExcessHet=6.9897;FS=14.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-3.610e-01;SOR=0.380;VQSLOD=13.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,15:40:99:335,0,609
chr3	164761113	rs13073000	A	G	305.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.621;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=-3.520e-01;SOR=0.976;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:164761113_A_G:135,9,0:164761113
chr3	164761122	rs13073170	C	G	309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.09;ReadPosRankSum=0.414;SOR=0.859;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:164761113_A_G:135,9,0:164761113
chr3	164761123	rs13095976	T	C	309	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.09;ReadPosRankSum=0.414;SOR=0.859;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:164761113_A_G:135,9,0:164761113
chr3	164764719	rs9838509	C	A	3444.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.280e-01;DB;DP=52;ExcessHet=3.9794;FS=1.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=1.08;SOR=0.577;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1638,156,0
chr3	164766807	rs200218470	T	TAA	1489.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.420;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=-3.130e-01;SOR=1.101;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:164766807_T_TAA:765,51,0:164766807
chr3	164766808	rs67477789	TC	T	1526.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.700e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.27;ReadPosRankSum=-2.720e-01;SOR=1.030;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:54:1|1:164766807_T_TAA:802,54,0:164766807
chr3	164766816	rs9821196	C	A	1730.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.633e+00;DB;DP=20;ExcessHet=3.9794;FS=1.743;MQ=59.84;MQRankSum=0.00;QD=27.48;ReadPosRankSum=-3.920e-01;SOR=1.426;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:164766807_T_TAA:882,60,0:164766807
chr3	164766835	rs9841237	T	C	2002.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.613;DB;DP=30;ExcessHet=3.9794;FS=3.646;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=1.30;SOR=1.200;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,30:30:89:1068,89,0
chr3	164767148	rs9290253	T	C	467.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.484;SOR=1.493;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr3	164772957	rs9290256	C	T	4661.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=63;ExcessHet=3.9794;FS=4.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=0.874;SOR=0.975;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1965,189,0
chr3	164773057	rs9290257	G	A	5286.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=77;ExcessHet=3.9794;FS=1.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=1.57;SOR=0.815;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2254,231,0
chr3	164776647	rs10662879	T	TACACACAC,TACACACACACACAC	2189.50	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.92;SOR=6.399;VQSLOD=5.15;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,6,5:11:99:578,196,166,258,0,232
chr3	164776913	rs60170840	C	CAT	10181.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.43;DB;DP=113;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=1.12;SOR=0.706;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,113:113:99:5031,340,0
chr3	164777677	rs9290259	T	G	2923.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.55;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=0.144;SOR=0.729;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1626,162,0
chr3	164781368	rs11718901	G	A	2059.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.43;DB;DP=21;ExcessHet=3.9794;FS=1.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=0.553;SOR=0.569;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:736,63,0
chr3	164783165	rs9283633	T	C	2999.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=42;ExcessHet=3.9794;FS=4.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=-2.810e-01;SOR=1.027;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1409,126,0
chr3	164785338	rs9865476	G	A	1547.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.84;DB;DP=15;ExcessHet=3.9794;FS=2.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.10;ReadPosRankSum=0.783;SOR=0.340;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:612,45,0
chr3	164786264	rs9758471	C	T	69.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.51;SOR=2.303;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	164786382	rs9758479	C	A	2395.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.245e+00;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=0.463;SOR=0.814;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:164786382_C_A:1485,99,0:164786382
chr3	164786396	rs9754967	T	C	3169.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.40;DB;DP=40;ExcessHet=3.9794;FS=2.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.48;ReadPosRankSum=0.415;SOR=0.369;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:164786382_C_A:1899,129,0:164786382
chr3	164786413	rs9756068	A	G	3804.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.244e+00;DB;DP=53;ExcessHet=3.9794;FS=4.414;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=-1.480e-01;SOR=0.372;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,53:53:99:1|1:164786382_C_A:2245,159,0:164786382
chr3	164786629	rs11313475	TA	T	2949.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.590e-01;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.289;SOR=0.701;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1338,132,0
chr3	164793467	rs7430654	C	A	280.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=0.524;SOR=1.802;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr3	164793492	rs7430656	C	A	764.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=5.892;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr3	164793541	rs7432386	G	T	978.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.387e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=1.26;SOR=1.501;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
chr3	165495400	rs2686409	G	A	5559.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=52;ExcessHet=3.0103;FS=8.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=-3.450e-01;SOR=1.136;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,31:52:99:0|1:165495400_G_A:1154,0,930:165495400
chr3	165495420	rs2686410	G	C	5638.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=51;ExcessHet=3.0103;FS=1.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.99;ReadPosRankSum=0.728;SOR=0.521;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,30:51:99:0|1:165495400_G_A:1127,0,956:165495400
chr3	165496622	rs2686411	A	T	1055.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513e+00;DB;DP=11;ExcessHet=3.0103;FS=3.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=0.456;SOR=2.093;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:88:88,0,229
chr3	166579509	rs73165187	C	T	60.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:67,0,37
chr3	166579841	rs13324646	A	G	3085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=55.78;POSITIVE_TRAIN_SITE;QD=30.80;SOR=1.300;VQSLOD=3.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:166579841_A_G:938,69,0:166579841
chr3	166579857	rs9832877	C	T	2565.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=54.77;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.05;SOR=1.863;VQSLOD=0.898;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:166579841_A_G:824,57,0:166579841
chr3	166958824	rs9683261	A	G	1219.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.174e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.28;ReadPosRankSum=-8.230e-01;SOR=2.613;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:331,24,0
chr3	166960278	rs11923256	G	T	1498.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204e+00;DB;DP=25;ExcessHet=6.9897;FS=5.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.833;SOR=0.346;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:207,0,379
chr3	166966436	rs60512741	C	T	805.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.380e-01;DB;DP=35;ExcessHet=3.9794;FS=0.926;MQ=59.96;MQRankSum=0.975;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=0.497;SOR=0.896;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,16:35:99:407,0,528
chr3	167000256	rs12638625	G	C	2439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=83;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=1.60;SOR=0.686;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1264,0,1018
chr3	167006568	rs7625639	G	T	2065.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137e+00;DB;DP=71;ExcessHet=3.9794;FS=2.797;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-3.610e-01;SOR=1.091;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,41:71:99:1223,0,908
chr3	167006612	rs7625651	G	T	2809.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.750e-01;DB;DP=121;ExcessHet=3.9794;FS=1.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.61;SOR=0.555;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,67:121:99:1726,0,1368
chr3	167023738	rs13096767	G	C	1698.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.820e-01;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=1.12;SOR=0.647;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:338,0,335
chr3	167034814	rs13068132	T	C	4706.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=102;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.240e+00;SOR=0.693;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,40:102:99:915,0,1439
chr3	167035501	rs4580553	G	A	877.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=8.000e-03;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=-1.750e-01;SOR=0.516;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:505,42,0
chr3	167040185	rs12632964	A	C	541.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.52;SOR=0.407;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:219,0,344
chr3	167040270	rs12638428	G	C	446.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.33;ReadPosRankSum=-1.383e+00;SOR=2.833;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr3	167045701	.	C	CAA	338.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DP=16;ExcessHet=3.9794;FS=0.000;MQ=57.82;MQRankSum=-9.550e-01;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=0.381;SOR=0.765;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:16:99:169,0,106
chr3	167051769	rs11923054	T	C	1334.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=23;ExcessHet=6.9897;FS=2.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-1.232e+00;SOR=0.969;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:364,0,372
chr3	167068256	rs4619784	T	A	1984.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.417e+00;DB;DP=34;ExcessHet=6.9897;FS=2.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.110;SOR=0.547;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:389,0,453
chr3	167077691	rs4257551	T	A	6918.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=0.977;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2143,221,0
chr3	167078544	rs9834845	T	C	1919.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=46;ExcessHet=6.9897;FS=0.641;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-5.160e-01;SOR=0.600;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:585,0,585
chr3	167272342	rs73173042	G	C	884.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.51;ReadPosRankSum=0.444;SOR=2.226;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:99,0,111
chr3	167351418	rs9845725	T	C	1258.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.12;DB;DP=12;ExcessHet=3.9794;FS=2.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-2.230e-01;SOR=1.189;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:477,36,0
chr3	167508062	rs13090836	T	C	521.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=1.57;SOR=1.022;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:92:264,0,92
chr3	167728808	rs9827289	A	T	464.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.524;SOR=0.399;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:137,0,26
chr3	167745703	rs9861339	A	G	593.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.302;SOR=0.749;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:289,0,202
chr3	167754573	rs6786410	A	G	1234.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=20;ExcessHet=3.9794;FS=4.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.75;ReadPosRankSum=0.218;SOR=1.988;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:378,0,288
chr3	167755001	rs142359000	T	C	72.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:81,0,32
chr3	167762678	rs57702503	C	CA	1689.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DB;DP=29;ExcessHet=6.9897;FS=0.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-2.440e-01;SOR=0.769;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,12:29:99:230,0,349
chr3	167764594	rs10663226	C	CAA	1056.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DB;DP=45;ExcessHet=3.9794;FS=0.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-3.150e-01;SOR=0.796;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,17:45:99:440,0,697
chr3	167812736	rs2280524	T	G	1509.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=31;ExcessHet=6.9897;FS=1.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-7.900e-02;SOR=0.542;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:466,0,524
chr3	168269756	rs6771018	A	G	2066.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.93;DB;DP=75;ExcessHet=3.9794;FS=0.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.78;SOR=0.599;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,40:75:99:975,0,863
chr3	168269864	rs11321565	TA	T	370.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.36;ReadPosRankSum=0.679;SOR=1.143;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:47:181,0,47
chr3	168530046	.	C	CT	207.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.010;DP=11;ExcessHet=3.9794;FS=2.582;MQ=60.00;MQRankSum=0.00;QD=6.93;ReadPosRankSum=-5.280e-01;SOR=1.893;VQSLOD=4.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:60:60,0,69
chr3	168530459	rs595594	A	G	613.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.137;SOR=0.749;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,113
chr3	168538993	rs603638	A	G	5375.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-1.933e+00;SOR=0.742;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,26:69:99:637,0,1167
chr3	168542454	rs145528794	T	TCACACA,TCACA	1451.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.370e-01;DB;DP=19;ExcessHet=3.9794;FS=5.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=-6.350e-01;SOR=1.498;VQSLOD=6.59;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,10,8:19:99:698,190,222,235,0,230
chr3	168546914	rs678690	C	T	3275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DB;DP=63;ExcessHet=6.9897;FS=1.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.208;SOR=0.871;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,37:63:99:966,0,580
chr3	168810980	rs12634348	C	T	686.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=25;ExcessHet=3.9794;FS=1.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.247;SOR=0.968;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:374,0,409
chr3	168811043	rs12634370	C	A	202.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=-6.520e-01;SOR=0.693;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,118
chr3	168819788	rs9290358	A	G	1621.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.16;SOR=5.235;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:349,27,0
chr3	168820269	rs35919673	C	T	106.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:114,0,32
chr3	168825911	rs4955639	T	C	454.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=0.524;SOR=3.912;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:66,6,0
chr3	168830777	rs74516251	G	A	128.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:137,0,65
chr3	168830847	rs6444840	A	G	63.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=2.303;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr3	168840179	rs16853198	A	G	97.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=2.10;SOR=0.283;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:106,0,197
chr3	168840571	rs3851380	A	T	4706.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=31.09;SOR=3.793;VQSLOD=5.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1007,78,0
chr3	168840607	rs3851381	C	T	2725.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=6.273;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:560,42,0
chr3	168851934	rs6773653	G	A	151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-01;DB;DP=17;ExcessHet=3.0103;FS=4.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=-1.962e+00;SOR=0.061;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:160,0,386
chr3	168864550	rs1420476	T	A	3199.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.29;SOR=8.739;VQSLOD=25.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:816,60,0
chr3	168867723	rs373492314	CTGTGTGTG	C	214.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.55;MQRankSum=0.00;QD=16.48;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:7:132,7,0
chr3	169098791	rs988397	C	T	497.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=0.992;SOR=1.329;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:129,0,168
chr3	169098861	rs988398	C	T	1602.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.89;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.29;ReadPosRankSum=0.880;SOR=0.717;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:286,0,161
chr3	169283495	rs3863105	T	C	239.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.84;SOR=3.912;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr3	169381262	.	GTCTCTC	G,GTCTCTCTC	87.14	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=21.78;SOR=3.258;VQSLOD=3.64;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,2:4:51:107,51,119,62,0,56
chr3	169525509	.	CAA	C	352.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.290e-01;DP=15;ExcessHet=3.9794;FS=1.210;MQ=60.00;MQRankSum=0.00;QD=7.67;ReadPosRankSum=1.33;SOR=0.423;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:141,0,183
chr3	169643955	rs1290670	C	T	1610.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700e-01;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-2.610e-01;SOR=0.686;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,24:58:99:538,0,837
chr3	169645073	.	CTTTTTT	C	174.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.000e-03;DP=13;ExcessHet=3.0103;FS=2.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.83;SOR=1.981;VQSLOD=6.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:182,0,280
chr3	169654095	rs76313862	A	G	821.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560e+00;DB;DP=39;ExcessHet=3.9794;FS=1.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.937;SOR=0.536;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,25:39:99:548,0,321
chr3	169684433	rs9836316	G	A	812.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=0.00;SOR=1.005;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:164,0,302
chr3	169710363	rs2160898	G	T	609.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=1.03;SOR=0.811;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:465,0,402
chr3	169801658	rs6444895	G	A	1018.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.801e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=-1.346e+00;SOR=3.545;VQSLOD=17.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:299,0,132
chr3	169802881	.	CCTGA	C	1445.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DP=85;ExcessHet=3.0103;FS=0.810;MQ=60.00;MQRankSum=0.00;QD=17.00;ReadPosRankSum=-5.570e-01;SOR=0.594;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,38:85:99:1454,0,2423
chr3	169802930	rs1861935	G	T	2677.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=66;ExcessHet=1.5490;FS=4.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=1.15;SOR=1.181;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,34:66:99:822,0,659
chr3	169824427	rs4955714	G	A	642.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.604e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=-1.810e+00;SOR=0.818;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr3	169854671	rs34124911	T	C	294.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=4.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.44;ReadPosRankSum=0.674;SOR=2.833;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:78,0,68
chr3	169890162	rs147807222	T	TA	407.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=5.421;VQSLOD=6.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr3	169894680	rs1386333	G	A	1756.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.932;DB;DP=48;ExcessHet=1.5490;FS=2.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=1.78;SOR=1.078;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,30:48:99:721,0,409
chr3	169953327	rs116076179	C	T	216.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=14;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-2.450e+00;SOR=0.061;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:225,0,220
chr3	169980956	rs10592710	CA	C	637.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004e+00;DB;DP=5;ExcessHet=3.9794;FS=2.057;MQ=59.12;MQRankSum=0.00;QD=19.31;ReadPosRankSum=0.824;SOR=1.473;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:36:36,0,59
chr3	169988364	.	C	CT	637.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210e-01;DP=47;ExcessHet=6.9897;FS=0.611;MQ=59.96;MQRankSum=0.00;QD=4.80;ReadPosRankSum=-9.950e-01;SOR=0.764;VQSLOD=5.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,15:47:99:147,0,381
chr3	169992975	rs138637605	CT	C	488.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.280e-01;DB;DP=14;ExcessHet=6.9897;FS=4.702;MQ=59.85;MQRankSum=0.00;QD=9.40;ReadPosRankSum=-1.740e-01;SOR=1.473;VQSLOD=5.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:79:118,0,79
chr3	170078232	rs3772173	C	T	2781.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.060e-01;DB;DP=55;ExcessHet=6.9897;FS=7.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.364;SOR=1.210;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,30:55:99:861,0,632
chr3	170099218	rs146524896	ATTAT	A	866.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.613;SOR=0.522;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,5:15:99:180,0,463
chr3	170105233	rs6786374	C	T	4450.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015e+00;DB;DP=88;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-1.890e-01;SOR=0.667;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,49:88:99:1324,0,1016
chr3	170105378	rs6786542	C	T	6013.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=142;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.461;SOR=0.666;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,76:142:99:1923,0,1575
chr3	170140792	rs1477211	A	G	3407.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=54;ExcessHet=6.9897;FS=4.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=1.28;SOR=0.311;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:998,0,620
chr3	170140846	rs2111826	A	G	7153.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.671e+00;DB;DP=112;ExcessHet=3.9794;FS=5.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=0.021;SOR=0.444;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3634,335,0
chr3	170150076	rs6444929	C	T	2013.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.62;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=0.379;SOR=0.756;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:935,78,0
chr3	170185283	rs73882014	C	T	62.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=1.38;SOR=0.804;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:69,0,29
chr3	170198898	rs3732449	C	T	4637.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=141;ExcessHet=0.4576;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=32.89;SOR=1.802;VQSLOD=5.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4654,423,0
chr3	170203820	rs3732448	T	G	186.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=-8.420e-01;SOR=1.609;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	170244884	rs73163875	G	A	157.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-1.465e+00;SOR=0.892;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:166,0,143
chr3	170586057	rs3732927	C	T	1036.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.149e+00;DB;DP=22;ExcessHet=6.9897;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-9.240e-01;SOR=1.075;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:181,0,275
chr3	170611304	rs3215293	GT	G	1060.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=17;ExcessHet=3.9794;FS=3.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=1.81;SOR=0.232;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,13:17:99:475,0,110
chr3	170611819	rs71634488	C	CA	38.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=19.03;SOR=2.303;VQSLOD=2.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	170625806	rs2271998	C	T	390.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.057e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=1.35;SOR=0.460;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr3	170724729	rs1499821	C	T	344.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.980;SOR=0.307;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:158,0,348
chr3	170724883	rs8192675	T	C	2409.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.564;DB;DP=96;ExcessHet=3.9794;FS=7.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=1.67;SOR=1.156;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,41:96:99:1017,0,1425
chr3	170732599	rs7356034	G	A	462.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=-3.000e-03;SOR=0.399;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:213,0,167
chr3	170744157	rs72160113	CT	C	32.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.08;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:39:0|1:170744157_CT_C:39,0,75:170744157
chr3	170784256	rs145832204	AT	A	894.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.443;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.32;ReadPosRankSum=-5.000e-01;SOR=0.634;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,8:31:99:138,0,283
chr3	170825905	rs6444960	C	G	3660.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.940e-01;DB;DP=39;ExcessHet=3.0103;FS=5.032;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=0.356;SOR=0.899;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1140,117,0
chr3	170825920	rs2291900	G	A	447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.740e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.730;SOR=0.776;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:456,0,313
chr3	170855757	rs150268192	CA	C	213.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=59.59;MQRankSum=0.00;QD=16.44;ReadPosRankSum=0.967;SOR=2.833;VQSLOD=4.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:4:128,0,4
chr3	170855867	rs73169771	T	A	1167.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=37;ExcessHet=3.9794;FS=0.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=0.257;SOR=0.885;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:611,0,418
chr3	170857167	rs34521732	G	GCACA	454.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.66;ReadPosRankSum=0.144;SOR=0.957;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:5:30:110,0,30
chr3	170857240	rs6444965	T	C	1317.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.676;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=-1.245e+00;SOR=0.742;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:369,0,318
chr3	170858406	rs2292006	T	G	7060.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=77;ExcessHet=3.0103;FS=2.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=-1.000e-02;SOR=0.487;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2651,231,0
chr3	170885097	rs2292005	C	T	2141.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.77;DB;DP=32;ExcessHet=1.5490;FS=3.376;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.18;ReadPosRankSum=0.896;SOR=2.179;VQSLOD=4.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:397,0,623
chr3	170893070	rs12637875	G	A	4816.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e-01;DB;DP=119;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=1.14;SOR=0.663;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,59:119:99:1483,0,1546
chr3	171065010	rs3082367	G	GA	671.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-01;DB;DP=43;ExcessHet=3.9794;FS=3.128;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.33;ReadPosRankSum=-1.183e+00;SOR=0.442;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,17:43:99:324,0,380
chr3	171065031	rs1389047	G	C	5096.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.89;QD=29.71;SOR=1.505;VQSLOD=2.71;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1645,126,0
chr3	171087469	rs3796295	G	A	3210.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=2.006;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1443,126,0
chr3	171323305	rs2287578	T	C	1294.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=17;ExcessHet=6.9897;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.224;SOR=0.999;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:262,0,217
chr3	171338237	rs9881788	T	G	5402.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DB;DP=71;ExcessHet=3.9794;FS=0.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=-1.089e+00;SOR=0.753;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,38:71:99:958,0,788
chr3	171362977	rs360399	A	G	5424.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=1.233;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1437,147,0
chr3	171377241	rs1378242	A	T	364.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:60:60,0,68
chr3	171380174	rs3774039	G	A	395.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=6.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.45;ReadPosRankSum=0.967;SOR=4.003;VQSLOD=13.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:73,0,74
chr3	171394331	rs3214830	CT	C	1157.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=26;ExcessHet=6.9897;FS=4.395;MQ=60.00;MQRankSum=0.00;QD=11.46;ReadPosRankSum=-1.105e+00;SOR=1.981;VQSLOD=4.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,13:26:99:312,0,299
chr3	171394825	rs9869289	C	T	2203.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;DB;DP=29;ExcessHet=3.9794;FS=1.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=1.01;SOR=0.914;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,21:29:99:555,0,151
chr3	171395468	rs2124147	A	G	7585.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=126;ExcessHet=3.9794;FS=1.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.96;ReadPosRankSum=1.30;SOR=0.777;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,53:126:99:1292,0,1810
chr3	171404478	rs2290480	C	A	3473.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007e+00;DB;DP=80;ExcessHet=6.9897;FS=4.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.395;SOR=0.504;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,40:80:99:991,0,1111
chr3	171405384	rs2305547	A	T	635.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.31;ReadPosRankSum=0.680;SOR=1.127;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:40:40,0,124
chr3	171442387	rs73879819	T	G	481.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.73;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.116e+00;SOR=0.559;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:249,0,354
chr3	171442635	rs7647840	C	T	2806.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=106;ExcessHet=3.9794;FS=1.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.49;ReadPosRankSum=0.666;SOR=0.555;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,49:106:99:1257,0,1434
chr3	171442750	rs10710862	AG	A	1095.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.920e-01;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=1.45;SOR=0.542;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,10:32:99:303,0,793
chr3	171443607	rs4131284	C	G	1262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DB;DP=42;ExcessHet=3.9794;FS=0.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=2.37;SOR=0.560;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,13:42:99:293,0,754
chr3	171510238	rs3934620	C	T	2702.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.540e-01;DB;DP=64;ExcessHet=1.5490;FS=4.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-5.400e-02;SOR=0.357;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,35:64:99:868,0,756
chr3	171574381	rs143748949	T	G	60.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=1.28;SOR=1.179;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,108
chr3	171844787	rs4894810	A	T	3576.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.31;DB;DP=64;ExcessHet=3.9794;FS=2.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-1.960e-01;SOR=0.871;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2011,192,0
chr3	171969077	rs7652177	C	G	1716.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=37;ExcessHet=1.5490;FS=4.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.282;SOR=1.429;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,14:37:99:352,0,598
chr3	172028460	rs10936720	A	T	351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=25;ExcessHet=3.0103;FS=1.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.789;SOR=1.179;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:360,0,313
chr3	172028521	rs12636516	C	A	691.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.620e-01;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=0.271;SOR=0.675;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,27:49:99:700,0,610
chr3	172034271	rs9837821	T	C	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672e+00;DB;DP=37;ExcessHet=3.0103;FS=1.463;MQ=59.95;MQRankSum=1.03;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.500e-02;SOR=1.179;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,18:37:99:465,0,533
chr3	172046861	rs2270568	T	C	1920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.903;DB;DP=176;ExcessHet=3.0103;FS=1.179;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=1.42;SOR=0.578;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,80:176:99:1929,0,2325
chr3	172046933	rs6799133	A	G	1460.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.140e-01;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-1.767e+00;SOR=0.663;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,59:139:99:1469,0,2155
chr3	172052897	rs57479698	G	GT	893.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.600e-02;DB;DP=67;ExcessHet=6.9897;FS=0.523;MQ=60.00;MQRankSum=0.00;QD=3.99;ReadPosRankSum=0.015;SOR=0.769;VQSLOD=5.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:45,17:67:99:187,0,955
chr3	172054957	rs34366798	C	CT	83.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.41;ReadPosRankSum=-2.530e-01;SOR=0.693;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:92:92,0,96
chr3	172055101	rs56106326	A	C	574.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DB;DP=50;ExcessHet=3.0103;FS=1.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.486;SOR=0.451;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:583,0,653
chr3	172063933	rs584091	A	G	1003.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=0.319;SOR=5.058;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:77,0,27
chr3	172064335	rs55676402	A	AT	2267.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.299;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.07;ReadPosRankSum=0.229;SOR=1.097;VQSLOD=7.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,18:26:78:250,0,78
chr3	172064828	rs502170	A	C	906.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.23;ReadPosRankSum=1.40;SOR=1.675;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:142,0,29
chr3	172080218	rs11333442	AT	A	99.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.96;SOR=3.258;VQSLOD=6.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:115,12,0
chr3	172162829	rs482204	G	A	1275.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.017e+00;DB;DP=12;ExcessHet=3.9794;FS=3.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=0.616;SOR=1.378;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:172162829_G_A:540,36,0:172162829
chr3	172162837	rs477251	T	C	1883.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.450e-01;DB;DP=12;ExcessHet=3.0103;FS=1.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=0.740;SOR=1.445;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:172162829_G_A:540,36,0:172162829
chr3	172165177	rs10600545	GGA	G	777.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=5;ExcessHet=3.9794;FS=8.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.930;SOR=3.024;VQSLOD=4.37;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:188,15,0
chr3	172166033	rs495225	G	A	21696.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.297e+00;DB;DP=419;ExcessHet=3.9794;FS=0.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=0.333;SOR=0.653;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,419:419:99:12887,1254,0
chr3	172224303	rs1131532	A	G	7154.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.94;SOR=2.158;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1719,156,0
chr3	172224769	rs111284464	GC	G	8705.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=2.006;VQSLOD=5.79;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,68:68:99:1|1:172224769_GC_G:3004,205,0:172224769
chr3	172224771	rs17848019	T	A	8705.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.20;SOR=2.018;VQSLOD=18.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,68:68:99:1|1:172224769_GC_G:3004,205,0:172224769
chr3	172226752	rs3136598	A	C	554.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=5.283;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	172227199	rs3815496	C	T	3865.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.11;SOR=4.407;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:742,57,0
chr3	172351370	rs61744197	C	T	1440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.34;ReadPosRankSum=-7.790e-01;SOR=0.697;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,51:108:99:1449,0,1501
chr3	172365619	rs9865941	G	A	2353.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.02;DB;DP=50;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=-7.230e-01;SOR=0.856;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1785,150,0
chr3	172486597	rs34403732	T	A	260.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=0.967;SOR=2.833;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr3	172486964	rs35443668	C	A	1249.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.854e+00;DB;DP=34;ExcessHet=3.9794;FS=6.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=1.64;SOR=0.223;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:508,0,385
chr3	172520818	rs7644191	G	C	2461.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=2.303;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:551,48,0
chr3	172533725	rs4491935	G	A	139.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=-6.740e-01;SOR=0.527;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr3	172607710	rs59204362	A	G	102.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=2.833;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr3	172631747	rs9829187	G	A	145.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.44;SOR=3.258;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr3	172634027	rs28685083	T	G	372.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.01;SOR=1.445;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:389,36,0
chr3	173322248	rs3844523	T	C	766.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=0.974;SOR=1.230;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:330,27,0
chr3	173323508	rs10513714	G	A	150.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130e-01;DB;DP=13;ExcessHet=3.0103;FS=2.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=0.552;SOR=0.204;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:159,0,184
chr3	173525731	rs1488548	G	T	1114.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=8;ExcessHet=3.0103;FS=8.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.84;ReadPosRankSum=-3.900e-01;SOR=4.840;VQSLOD=13.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:93:93,0,145
chr3	173525768	rs1488547	A	G	803.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=9.031;MQ=59.74;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=-1.036e+00;SOR=5.376;VQSLOD=-9.319e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:60:69,0,60
chr3	173992971	rs691120	A	G	1420.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.74;ReadPosRankSum=-6.990e-01;SOR=3.258;VQSLOD=18.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:542,39,0
chr3	173997153	rs7646919	G	A	4061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.466e+00;DB;DP=163;ExcessHet=3.9794;FS=7.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=-3.590e-01;SOR=0.438;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,70:163:99:1699,0,2532
chr3	174814738	rs9823911	G	A	5586.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DB;DP=92;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=2.16;SOR=0.683;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,44:92:99:1183,0,1258
chr3	174814920	rs9836841	A	G	4583.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=89;ExcessHet=3.9794;FS=3.329;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=0.480;SOR=0.807;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,33:89:99:789,0,1407
chr3	174815291	rs9875611	G	A	230.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=3.912;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	174935828	rs34537026	C	T	4128.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.640e-01;DB;DP=87;ExcessHet=1.5490;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=-9.120e-01;SOR=0.989;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2496,260,0
chr3	175165079	rs6802937	C	T	11594.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=0.818;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2917,299,0
chr3	175165201	rs2161041	T	G	4982.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.511e+00;DB;DP=44;ExcessHet=3.0103;FS=2.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.68;ReadPosRankSum=-1.598e+00;SOR=0.473;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1460,132,0
chr3	175184624	rs79129100	C	CA	180.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=-4.890e-01;SOR=2.833;VQSLOD=6.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:6:189,0,6
chr3	175185077	rs16825751	C	A	186.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	175185101	rs16825752	T	A	32.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.609;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr3	175189406	rs35213579	CT	C	8243.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.590e-01;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.42;ReadPosRankSum=1.73;SOR=0.718;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1939,146,0
chr3	175189417	rs79264590	G	A	5574.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027e+00;DB;DP=64;ExcessHet=3.9794;FS=0.548;MQ=60.00;MQRankSum=0.00;QD=22.21;ReadPosRankSum=0.406;SOR=0.787;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,25:64:99:586,0,1121
chr3	175189447	rs9290555	G	A	6337.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;DB;DP=95;ExcessHet=3.9794;FS=0.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=0.010;SOR=0.768;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,41:95:99:1083,0,1419
chr3	175189718	rs9879221	A	G	1128.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=-5.020e-01;SOR=1.828;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:348,0,155
chr3	175205148	rs7646041	C	T	2870.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.66;SOR=3.967;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:1028,86,0
chr3	175205221	rs62287072	T	G	771.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.703;SOR=0.678;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,31:79:99:780,0,1229
chr3	175205248	rs77907800	A	T	1319.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=87;ExcessHet=3.0103;FS=2.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=0.361;SOR=1.058;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,50:87:99:1328,0,852
chr3	175345143	rs9866564	C	G	2516.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=1.64;SOR=0.642;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:98:891,98,0
chr3	175473047	rs9826737	T	C	2970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=2.331;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:942,75,0
chr3	176232677	rs35451870	G	A	97.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:106,0,70
chr3	176744031	rs3046447	GA	G	133.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.32;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:13:98,0,13
chr3	176752202	rs1905503	A	T	414.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=22;ExcessHet=3.9794;FS=4.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=0.574;SOR=1.275;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,3:22:56:0|1:176752202_A_T:56,0,489:176752202
chr3	176752299	rs5854736	T	TA	314.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.388;DB;DP=13;ExcessHet=3.9794;FS=1.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=1.36;SOR=0.357;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,4:13:73:73,0,215
chr3	176756230	rs77478951	G	A	1360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.722;DB;DP=51;ExcessHet=3.9794;FS=5.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-4.790e-01;SOR=0.329;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,30:51:99:800,0,606
chr3	176765253	rs1201300	G	A	5804.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=0.884;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,47:47:99:1|1:176765253_G_A:1856,141,0:176765253
chr3	176765269	rs3749234	T	C	1351.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.230e+00;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.78;SOR=0.754;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,23:50:99:0|1:176765253_G_A:565,0,764:176765253
chr3	176767667	.	GTTACTA	G	778.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=-2.030e-01;SOR=0.269;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,13:16:99:537,0,363
chr3	176769608	rs1881979	G	A	879.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.361;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=0.879;SOR=0.657;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:271,0,427
chr3	176771861	.	T	TGC	303.61	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DP=5;ExcessHet=1.5490;FS=1.799;MQ=60.00;MQRankSum=0.00;QD=12.14;ReadPosRankSum=0.00;SOR=1.193;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,4:5:4:114,4,0
chr3	176782515	rs10691347	T	TTG	293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=0.385;SOR=0.693;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:151,0,112
chr3	177347042	rs2133591	A	G	4186.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.65;DB;DP=47;ExcessHet=3.0103;FS=2.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=-1.101e+00;SOR=0.489;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1705,141,0
chr3	177347155	rs2133600	G	A	7923.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.070e-01;DB;DP=107;ExcessHet=3.0103;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=-8.320e-01;SOR=0.752;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3193,318,0
chr3	177347291	rs9841093	G	A	4481.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.400e+00;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;SOR=0.684;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,42:43:99:1117,101,0
chr3	178742690	rs4607155	T	C	1108.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.65;ReadPosRankSum=1.44;SOR=2.649;VQSLOD=-5.530e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:102,0,99
chr3	178748480	rs4955810	C	T	1162.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.510e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.60;ReadPosRankSum=0.128;SOR=1.556;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:259,0,142
chr3	178785549	rs6772028	G	A	3350.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DB;DP=36;ExcessHet=3.0103;FS=10.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.92;ReadPosRankSum=-6.300e-02;SOR=2.274;VQSLOD=17.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:504,0,397
chr3	178917005	rs3729674	A	G	678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=32;ExcessHet=3.9794;FS=7.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.37;ReadPosRankSum=-1.470e-01;SOR=1.802;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,10:32:99:317,0,590
chr3	178921158	rs7623154	G	A	47.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.84;ReadPosRankSum=-1.981e+00;SOR=0.223;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:56:56,0,155
chr3	178921253	rs17550640	G	GTAAA	748.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=27;ExcessHet=3.9794;FS=1.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=1.47;SOR=1.002;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:465,0,903
chr3	178921639	rs2699895	C	A	196.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DB;DP=9;ExcessHet=3.9794;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=0.903;SOR=1.426;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,236
chr3	178922222	rs3729676	G	T	694.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.690e-01;DB;DP=44;ExcessHet=3.9794;FS=0.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.08;ReadPosRankSum=0.246;SOR=0.859;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,15:44:99:312,0,787
chr3	178922274	rs2699896	C	A	2119.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DB;DP=94;ExcessHet=3.9794;FS=1.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=-6.930e-01;SOR=0.786;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,38:94:99:906,0,1430
chr3	178922430	rs3729679	A	G	995.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=54;ExcessHet=3.9794;FS=2.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=0.808;SOR=1.074;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,18:54:99:456,0,943
chr3	178927345	rs3729682	T	C	1285.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=89;ExcessHet=3.9794;FS=3.020;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=2.19;SOR=0.955;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,34:89:99:768,0,1251
chr3	178927848	rs67871207	AT	A	206.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.33;ReadPosRankSum=-1.113e+00;SOR=0.446;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:109,0,104
chr3	178936227	rs17849071	T	G	259.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=1.16;SOR=0.489;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:61:61,0,158
chr3	178937877	rs11918324	A	G	502.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=17;ExcessHet=3.9794;FS=7.278;MQ=38.90;MQRankSum=1.48;QD=14.77;ReadPosRankSum=0.489;SOR=0.053;VQSLOD=-4.559e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:255,0,295
chr3	178938747	rs6443625	A	T	671.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.660e-01;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.44;MQRankSum=-3.300e-01;POSITIVE_TRAIN_SITE;QD=7.15;ReadPosRankSum=0.213;SOR=0.715;VQSLOD=0.847;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,8:23:99:143,0,406
chr3	178942431	rs2699889	C	G	1695.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.61;ReadPosRankSum=0.456;SOR=0.892;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:210,0,291
chr3	178943482	rs186071214	C	T	31.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
chr3	178943987	rs3975515	T	TACTTG	1336.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.84;SOR=6.869;VQSLOD=7.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr3	178957969	rs6782557	G	A	1276.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=56.73;MQRankSum=-2.847e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=1.76;SOR=0.709;VQSLOD=-1.125e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:347,0,458
chr3	178958124	rs6806555	A	G	409.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=1.28;SOR=1.739;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:114,0,25
chr3	178959048	rs6786114	G	A	276.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=56.75;MQRankSum=-1.242e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.283;SOR=0.330;VQSLOD=-5.829e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:129,0,99
chr3	178959144	rs6786049	C	T	1196.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=35;ExcessHet=3.9794;FS=7.859;MQ=57.00;MQRankSum=-1.759e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=1.78;SOR=1.548;VQSLOD=-1.167e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:559,0,385
chr3	178959359	rs6810246	A	G	607.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.49;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=-6.700e-02;SOR=0.532;VQSLOD=2.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:90:316,0,90
chr3	178960607	rs1059691	A	G	877.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.05;MQRankSum=-8.430e-01;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=-9.850e-01;SOR=0.360;VQSLOD=0.744;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:310,0,260
chr3	178962517	rs4080957	T	C	287.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=56.98;MQRankSum=-9.210e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=-5.980e-01;SOR=0.976;VQSLOD=-6.428e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:186,0,105
chr3	178968634	rs7645550	C	T	4062.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.674e+00;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=0.495;SOR=0.692;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,35:78:99:772,0,1218
chr3	178976591	rs56400023	T	A	284.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.437e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=-5.520e-01;SOR=0.892;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:293,0,164
chr3	178976777	rs11720871	C	T	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.420e+00;SOR=0.804;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:507,0,589
chr3	178976821	rs11720935	G	A	372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e-01;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.40;MQRankSum=-1.003e+00;QD=13.29;ReadPosRankSum=-1.867e+00;SOR=0.709;VQSLOD=-9.227e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,13:28:99:381,0,469
chr3	178977844	rs7613411	G	C	8777.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.582e+00;DB;DP=111;ExcessHet=3.0103;FS=2.269;MQ=59.90;MQRankSum=-8.450e-01;POSITIVE_TRAIN_SITE;QD=29.46;ReadPosRankSum=-1.121e+00;SOR=0.511;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3838,333,0
chr3	178978078	rs62410370	T	G	2224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.480e-01;DB;DP=167;ExcessHet=3.0103;FS=2.796;MQ=59.80;MQRankSum=-9.240e-01;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=1.01;SOR=0.488;VQSLOD=1.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,89:167:99:2233,0,2090
chr3	178978328	rs62410371	C	T	313.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=39;ExcessHet=3.0103;FS=7.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.03;ReadPosRankSum=-2.240e-01;SOR=0.939;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,13:39:99:322,0,687
chr3	178984185	rs7643916	T	C	648.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=1.04;SOR=0.957;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:108,0,107
chr3	178984575	rs7612684	A	G	2808.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=66;ExcessHet=6.9897;FS=3.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.174;SOR=0.447;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:786,0,1008
chr3	178984679	rs7646600	T	C	327.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=1.18;SOR=1.214;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:69:69,0,173
chr3	179051472	rs35983049	A	G	3168.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.500e-02;DB;DP=60;ExcessHet=1.5490;FS=0.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=2.10;SOR=0.774;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1975,180,0
chr3	179066454	rs36077761	T	C	317.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=1.86;SOR=1.609;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr3	179076947	rs1966448	C	T	661.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.22;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.78;ReadPosRankSum=-2.330e-01;SOR=2.400;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:453,33,0
chr3	179092989	rs9865666	C	T	2134.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.63;DB;DP=32;ExcessHet=3.9794;FS=0.996;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=0.301;SOR=0.507;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1049,96,0
chr3	179096006	rs35435588	C	CA	345.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.29;ReadPosRankSum=-2.640e-01;SOR=0.851;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:55:265,0,55
chr3	179096508	rs7637065	C	G	4528.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=0.854;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1291,129,0
chr3	179096938	rs71181287	CTT	C	387.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.398;DB;DP=6;ExcessHet=1.5490;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.901;SOR=2.147;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	179096986	rs79135489	G	A	277.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=-8.760e-01;SOR=0.693;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:108,0,28
chr3	179103342	rs200984893	C	CT	2411.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.96;ReadPosRankSum=0.248;SOR=1.179;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:942,99,0
chr3	179109735	rs2287209	A	G	3891.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=67;ExcessHet=3.9794;FS=1.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=-7.260e-01;SOR=0.704;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2059,200,0
chr3	179137273	rs1362650	A	G	4840.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.131e+00;DB;DP=67;ExcessHet=3.9794;FS=0.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.150;SOR=0.658;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2062,201,0
chr3	179291308	rs71907893	CT	C	2250.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DB;DP=30;ExcessHet=3.9794;FS=5.034;MQ=59.91;MQRankSum=1.26;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=0.314;SOR=1.390;VQSLOD=0.284;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,17:30:99:396,0,274
chr3	179298999	rs1132429	C	T	12031.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=155;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=5.000e-03;SOR=0.705;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,71:155:99:1762,0,2193
chr3	179304255	rs9818068	G	A	1020.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127e+00;DB;DP=16;ExcessHet=3.9794;FS=2.382;MQ=60.00;MQRankSum=0.00;QD=23.18;ReadPosRankSum=0.387;SOR=0.250;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,10:16:99:156,0,127
chr3	179305654	rs6443659	A	T	701.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.358;DB;DP=13;ExcessHet=3.9794;FS=1.964;MQ=60.00;MQRankSum=0.00;QD=18.00;ReadPosRankSum=1.71;SOR=1.501;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:165,0,164
chr3	179399570	rs13080037	C	T	4020.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DB;DP=61;ExcessHet=3.9794;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.051;SOR=0.628;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:702,0,792
chr3	179399946	rs6807974	A	G	63.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:71,0,72
chr3	179425069	rs6797965	T	C	93.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,66
chr3	179439466	rs2119898	T	C	306.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=7;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.54;ReadPosRankSum=0.842;SOR=1.445;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:63:197,0,63
chr3	179448066	rs11309768	AT	A	5366.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=56;ExcessHet=3.0103;FS=5.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=1.05;SOR=2.069;VQSLOD=6.38;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,55:56:99:1525,140,0
chr3	179448383	rs3213761	C	T	4164.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.225;DB;DP=81;ExcessHet=3.9794;FS=0.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=-2.078e+00;SOR=0.627;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,38:81:99:871,0,1130
chr3	179463076	rs58527921	A	G	1259.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DB;DP=10;ExcessHet=3.9794;FS=10.360;MQ=59.38;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=29.30;ReadPosRankSum=1.15;SOR=1.767;VQSLOD=-1.368e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,6:10:99:0|1:179463076_A_G:229,0,134:179463076
chr3	179463081	rs59131484	G	A	1262.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=9;ExcessHet=3.9794;FS=7.723;MQ=59.36;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=30.07;ReadPosRankSum=1.96;SOR=2.019;VQSLOD=-1.424e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,6:9:99:0|1:179463076_A_G:232,0,112:179463076
chr3	179481615	rs12631170	C	T	704.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.980e-01;DB;DP=13;ExcessHet=3.9794;FS=2.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=-7.320e-01;SOR=0.160;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:400,39,0
chr3	179481738	.	CA	C	623.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DP=47;ExcessHet=6.9897;FS=4.432;MQ=59.68;MQRankSum=0.00;QD=6.30;ReadPosRankSum=0.282;SOR=0.391;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,16:47:99:241,0,316
chr3	179481971	rs3222346	CTGTG	CTG,C	2429.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.464e+00;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.50;ReadPosRankSum=-7.990e-01;SOR=0.626;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,27,5:33:59:961,125,59,762,0,876
chr3	179525807	rs6800017	T	C	1256.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.00;SOR=2.584;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:444,36,0
chr3	179527459	rs111620765	G	GA	1332.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.920e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=-9.100e-02;SOR=2.531;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,22:23:41:561,41,0
chr3	179533496	rs2111397	T	C	475.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.23;SOR=5.136;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr3	179537920	rs189188707	G	T	95.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.703;SOR=0.368;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:104,0,172
chr3	179592053	rs1609981	G	A	4894.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=34.71;SOR=2.220;VQSLOD=4.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1234,108,0
chr3	179592943	rs3030807	TGACTGA	T	1013.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.80;SOR=6.358;VQSLOD=6.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	179605294	rs2302741	T	C	371.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.23;SOR=4.804;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:388,30,0
chr3	179605647	rs41265425	C	A	1909.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=1.938;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1926,159,0
chr3	179689173	rs3774255	T	C	50.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.28;ReadPosRankSum=-4.640e-01;SOR=0.169;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:59:59,0,222
chr3	180679156	rs7428473	G	A	622.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.00;NEGATIVE_TRAIN_SITE;QD=13.52;SOR=1.931;VQSLOD=-1.378e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:452,45,0
chr3	180680889	.	AT	A	375.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010e-01;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.00;ReadPosRankSum=0.021;SOR=0.623;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:84:84,0,134
chr3	180706141	.	CT	C	47.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.72;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:30:32,0,30
chr3	182165734	rs9850537	T	G	1013.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.342e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=-2.410e-01;SOR=0.968;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,10:15:99:0|1:182165734_T_G:402,0,395:182165734
chr3	182165738	rs9868038	A	C	1086.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=-9.500e-01;SOR=0.719;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,10:16:99:0|1:182165734_T_G:402,0,395:182165734
chr3	182165763	rs59848502	C	G	2182.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.10;ReadPosRankSum=0.984;SOR=0.693;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:303,0,320
chr3	182546017	rs9814205	C	A	5115.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.90;SOR=1.134;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2686,276,0
chr3	182547256	rs2049283	G	T	62.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=2.303;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr3	182559765	.	C	CAAA	187.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=10;ExcessHet=6.9897;FS=0.000;MQ=58.68;MQRankSum=0.792;POSITIVE_TRAIN_SITE;QD=6.47;ReadPosRankSum=-2.100e-01;SOR=0.569;VQSLOD=1.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:95:95,0,134
chr3	182562886	rs585848	C	G	85.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.35;SOR=1.609;VQSLOD=17.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr3	182563088	rs4859249	C	G	193.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260e-01;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.43;ReadPosRankSum=-3.240e-01;SOR=0.502;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,9:26:99:202,0,501
chr3	182575631	rs661774	G	T	1009.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.48;SOR=3.767;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:283,24,0
chr3	182576923	rs645597	T	A	2073.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.00;SOR=2.760;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1144,102,0
chr3	182583338	rs111933747	T	A	1184.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=85;ExcessHet=3.0103;FS=0.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.110e+00;SOR=0.546;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1193,0,1066
chr3	182583990	rs2272117	C	T	59.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,109
chr3	182585367	.	C	CTT	145.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.69;ReadPosRankSum=-1.840e-01;SOR=1.493;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:45:64,0,45
chr3	182587126	rs73050693	G	A	348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.930e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.036;SOR=1.061;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:357,0,250
chr3	182589987	rs73050702	A	G	97.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.64;SOR=1.179;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr3	182590354	rs771156	C	T	1205.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=22;ExcessHet=0.4576;FS=5.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=-1.257e+00;SOR=3.321;VQSLOD=17.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,20:22:16:687,16,0
chr3	182598863	rs796406	A	G	1834.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.98;SOR=2.670;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:821,69,0
chr3	182598983	rs594199	G	C	191.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=-7.920e-01;SOR=0.859;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:52:52,0,176
chr3	182603666	rs11392709	A	AT	343.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754e+00;DB;DP=34;ExcessHet=3.0103;FS=7.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.10;ReadPosRankSum=1.11;SOR=0.089;VQSLOD=5.64;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,15:34:99:352,0,469
chr3	182603693	rs6784314	G	A	502.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.648e+00;DB;DP=54;ExcessHet=3.0103;FS=1.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.30;ReadPosRankSum=0.551;SOR=0.468;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,23:54:99:511,0,929
chr3	182614493	rs4859142	T	C	1821.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.130e-01;DB;DP=156;ExcessHet=3.0103;FS=0.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-2.520e-01;SOR=0.786;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,80:156:99:1830,0,1775
chr3	182681740	rs4859146	C	T	2168.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.978;DB;DP=32;ExcessHet=3.0103;FS=2.698;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=0.720;SOR=1.291;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1016,96,0
chr3	182681853	rs4859147	T	C	2327.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.860e-01;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=1.58;SOR=0.655;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1351,141,0
chr3	182733547	rs12486983	T	C	855.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.23;ReadPosRankSum=-4.640e-01;SOR=1.329;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:224,15,0
chr3	182735182	rs6786878	C	A	3973.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=36;ExcessHet=3.0103;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.11;ReadPosRankSum=1.41;SOR=1.762;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1195,108,0
chr3	182735311	rs10804888	C	T	705.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.84;SOR=5.994;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr3	182738159	rs9834143	A	C	554.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.40;SOR=2.147;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr3	182743267	rs7640612	C	A	72.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=2.303;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	182755209	rs2270968	T	G	8253.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=-1.000e-01;SOR=0.679;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2938,273,0
chr3	182757084	rs2270967	G	A	1039.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.806;DB;DP=12;ExcessHet=3.9794;FS=2.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.00;SOR=1.730;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:471,36,0
chr3	182757178	rs9861464	T	C	912.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=1.022;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:271,21,0
chr3	182763016	rs13088830	C	T	783.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.66;ReadPosRankSum=0.328;SOR=2.066;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:268,24,0
chr3	182775397	rs7646991	C	T	584.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.08;SOR=4.174;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr3	182789367	rs6785680	T	C	466.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.07;SOR=4.977;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr3	182790249	rs7622479	G	A	3201.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=1.202;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:855,78,0
chr3	182804385	rs6806083	G	A	2466.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.500e-02;DB;DP=44;ExcessHet=3.9794;FS=0.959;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=-2.600e-01;SOR=0.941;VQSLOD=6.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1352,132,0
chr3	182810144	rs3732604	T	G	2643.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.497e+00;DB;DP=55;ExcessHet=1.5490;FS=1.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=-8.370e-01;SOR=0.552;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1635,164,0
chr3	182817328	rs937652	C	G	12085.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=286;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=-1.334e+00;SOR=0.733;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,286:286:99:8586,857,0
chr3	182853670	rs482912	T	C	3824.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.34;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=2.05;SOR=0.726;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1983,183,0
chr3	182858287	rs522235	C	T	3363.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273e+00;DB;DP=99;ExcessHet=6.9897;FS=1.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.523;SOR=0.580;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,48:99:99:1332,0,1438
chr3	182858461	rs831256	A	G	2050.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.094e+00;DB;DP=46;ExcessHet=6.9897;FS=1.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=0.536;SOR=1.134;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:662,0,816
chr3	182869818	rs683395	G	A	150.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.26;SOR=1.609;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	182870082	rs682396	G	A	3063.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.04;SOR=1.584;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:695,60,0
chr3	182870436	rs514636	G	A	2196.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.87;SOR=1.926;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:222,21,0
chr3	182871248	rs6414499	G	T	661	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.59;SOR=5.892;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:197,18,0
chr3	182871299	rs6414500	T	G	1685.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=-1.158e+00;SOR=6.091;VQSLOD=13.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:349,24,0
chr3	182871962	rs653316	C	T	9249.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=0.868;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2966,275,0
chr3	182880495	rs11543123	C	A	1151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=125;ExcessHet=3.0103;FS=0.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.21;ReadPosRankSum=1.01;SOR=0.821;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,55:125:99:1160,0,1543
chr3	182880629	rs602762	A	C	3101.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=3.584;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1048,87,0
chr3	182913092	rs577136	T	G	822.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=33;ExcessHet=3.9794;FS=9.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.356;SOR=2.461;VQSLOD=16.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:422,0,516
chr3	182925404	rs6804951	T	C	4611.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.87;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=0.909;SOR=0.758;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1598,138,0
chr3	182925799	rs6770548	A	G	178.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.11;SOR=3.611;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	182933562	rs3821522	C	T	57.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=1.65;SOR=0.446;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,107
chr3	182945814	.	T	TACACACACACACACACACAC	210.35	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=27.96;SOR=2.303;VQSLOD=4.33;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:15:1|1:182945814_T_TACACACACACACACACACAC:225,15,0:182945814
chr3	182945816	rs11708715	T	C	667.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=58.97;QD=32.10;SOR=5.136;VQSLOD=4.80;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:182945814_T_TACACACACACACACACACAC:225,15,0:182945814
chr3	182946002	rs6803121	A	G	10731.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.78;DB;DP=95;ExcessHet=3.0103;FS=5.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=0.086;SOR=1.246;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3041,284,0
chr3	182946278	rs142127970	C	CTCTTA	147.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.04;ReadPosRankSum=1.01;SOR=0.495;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:156,0,149
chr3	182946304	rs2272115	A	G	475.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=0.328;SOR=2.179;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:73:73,0,143
chr3	182947413	rs1122143	C	G	211.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=15;ExcessHet=3.0103;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.58;SOR=2.066;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:220,0,294
chr3	183007193	rs9881714	T	C	168.36	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.10;ReadPosRankSum=0.834;SOR=0.511;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:172,0,399
chr3	183027542	rs7639705	T	G	1641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.425;DB;DP=55;ExcessHet=3.9794;FS=2.234;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.961;SOR=0.500;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:613,0,687
chr3	183028303	rs57067370	C	T	210.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.524;SOR=0.399;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:111,0,60
chr3	183028331	rs56662557	A	G	145.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.14;ReadPosRankSum=0.010;SOR=0.223;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:154,0,134
chr3	183028450	rs60284418	CA	C	872.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.33;ReadPosRankSum=1.19;SOR=0.634;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,21:36:99:493,0,315
chr3	183028600	rs1105132	A	T	1069.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.808;DB;DP=24;ExcessHet=3.9794;FS=0.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=0.119;SOR=0.894;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:403,0,230
chr3	183029331	rs3732595	C	T	511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=27;ExcessHet=3.0103;FS=2.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=-1.001e+00;SOR=1.646;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:520,0,388
chr3	183041255	.	T	C	36.20	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=18.10;SOR=0.693;VQSLOD=14.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	183211687	rs3821514	G	C	541.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=-8.420e-01;SOR=1.721;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:295,21,0
chr3	183211906	rs1520101	A	G	5801.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.375e+00;DB;DP=76;ExcessHet=3.0103;FS=0.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=0.451;SOR=0.789;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,74:76:99:2100,155,0
chr3	183226378	rs7637137	C	A	402.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=1.07;SOR=0.368;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:62:174,0,62
chr3	183368005	rs3755649	G	A	178.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.48;ReadPosRankSum=0.481;SOR=0.250;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:87:87,0,322
chr3	183368216	rs3755648	A	T	3000.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432e+00;DB;DP=136;ExcessHet=3.9794;FS=0.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.462;SOR=0.747;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,62:136:99:1393,0,1841
chr3	183368891	rs2293031	C	T	3809.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=128;ExcessHet=3.9794;FS=4.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=1.36;SOR=0.910;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,61:128:99:1626,0,1676
chr3	183439972	rs3841649	A	AG	1712.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DB;DP=40;ExcessHet=3.9794;FS=0.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-4.610e-01;SOR=0.576;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,21:40:99:726,0,644
chr3	183446783	rs262969	G	A	886.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=1.66;SOR=0.240;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:374,0,258
chr3	183454766	rs262978	C	T	128.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:57:62,0,57
chr3	183476487	rs58167546	T	TAG	73.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:81:0|1:183476487_T_TAG:81,0,84:183476487
chr3	183476490	rs55953485	A	T	73.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.54;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:81:0|1:183476487_T_TAG:81,0,84:183476487
chr3	183476685	rs262993	G	A	1571.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=54;ExcessHet=3.9794;FS=0.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-2.400e-01;SOR=0.569;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,33:54:99:823,0,445
chr3	183480108	rs375913473	ATGT	A	1555.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=36;ExcessHet=3.9794;FS=6.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=1.22;SOR=1.546;VQSLOD=6.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,18:36:99:702,0,720
chr3	183480195	rs262990	T	C	563.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=12;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=-9.470e-01;SOR=2.419;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:265,0,122
chr3	183491340	rs262961	T	C	796.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=18;ExcessHet=3.9794;FS=1.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=0.914;SOR=1.270;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:224,0,321
chr3	183491720	rs262960	T	C	4479.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=0.923;SOR=0.678;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,20:54:99:494,0,1018
chr3	183493743	rs146705467	CGGA	C	1350.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=0.100;SOR=0.798;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,20:35:99:785,0,565
chr3	183493991	rs2606220	G	A	769.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DB;DP=16;ExcessHet=3.9794;FS=3.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=0.564;SOR=0.283;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:223,0,254
chr3	183495198	.	T	C	137.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.61;ReadPosRankSum=-3.280e-01;SOR=0.941;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:86:146,0,86
chr3	183510782	rs263022	T	A	472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=1.44;SOR=1.230;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:90:222,0,90
chr3	183521133	rs263042	A	G	1036.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-02;DB;DP=32;ExcessHet=3.9794;FS=2.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-1.950e-01;SOR=1.050;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:497,0,302
chr3	183524193	rs263034	T	C	959.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=30;ExcessHet=3.9794;FS=5.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=0.599;SOR=1.212;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:295,0,390
chr3	183524349	rs263033	C	G	218.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=1.37;SOR=0.569;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:145,0,186
chr3	183524379	rs263032	A	G	236.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-1.242e+00;SOR=0.941;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:184,0,136
chr3	183524948	rs263031	T	C	364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=22;ExcessHet=3.9794;FS=1.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.530;SOR=1.371;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:201,0,427
chr3	183528442	rs263024	C	T	955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=27;ExcessHet=3.9794;FS=2.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.11;SOR=1.247;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:511,0,260
chr3	183535094	rs2582091	C	T	760.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=28;ExcessHet=3.9794;FS=1.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.184;SOR=1.148;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:391,0,420
chr3	183535763	rs897604	A	G	1437.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=53;ExcessHet=3.9794;FS=2.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.648;SOR=0.409;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:719,0,792
chr3	183536063	rs894000	T	C	1942.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.104e+00;DB;DP=28;ExcessHet=3.0103;FS=2.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=-7.130e-01;SOR=0.405;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:397,0,482
chr3	183542726	rs2251249	A	T	1288.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.168;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.05;ReadPosRankSum=1.58;SOR=1.378;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:183542726_A_T:360,24,0:183542726
chr3	183542727	rs2251248	G	T	1288.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.021e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.05;ReadPosRankSum=1.58;SOR=1.378;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:183542726_A_T:360,24,0:183542726
chr3	183543291	rs263006	G	A	1546.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.080e-01;DB;DP=24;ExcessHet=3.9794;FS=0.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=1.98;SOR=0.567;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:655,71,0
chr3	183551123	rs262998	C	T	77.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.71;SOR=1.179;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr3	183558402	rs3732581	C	G	2644.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;DB;DP=56;ExcessHet=1.5490;FS=1.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=-5.800e-01;SOR=0.804;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1605,167,0
chr3	183560195	rs13091	A	G	1281.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.341;SOR=0.752;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:802,72,0
chr3	183560292	rs7652031	A	T	1269.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.804;DB;DP=31;ExcessHet=1.5490;FS=1.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=-5.370e-01;SOR=0.412;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:873,93,0
chr3	183562276	rs3811725	A	C	730.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=12;ExcessHet=1.5490;FS=2.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=0.604;SOR=0.203;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:442,36,0
chr3	183580750	rs1554397	A	G	5240.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.497;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1344,129,0
chr3	183586005	rs3749446	C	T	2048.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.346e+00;DB;DP=23;ExcessHet=3.0103;FS=3.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=-2.820e-01;SOR=1.414;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:789,69,0
chr3	183602187	rs6803120	T	G	244.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.58;SOR=3.912;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr3	183602251	rs12054027	C	T	381.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=1.65;SOR=1.473;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:289,24,0
chr3	183604723	rs1829515	A	G	6453.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.790e-01;DB;DP=107;ExcessHet=3.0103;FS=2.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=1.89;SOR=0.487;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3220,321,0
chr3	183604801	rs4420923	G	T	2862.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.733;DB;DP=71;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.47;ReadPosRankSum=-9.460e-01;SOR=0.812;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2265,212,0
chr3	183643585	rs56348509	T	C	535.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=11;ExcessHet=3.9794;FS=11.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=0.754;SOR=0.023;VQSLOD=17.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:189,0,174
chr3	183660585	rs3749442	G	A	2853.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DB;DP=114;ExcessHet=3.9794;FS=0.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=1.58;SOR=0.758;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,50:114:99:1128,0,1486
chr3	183663506	rs4148589	T	C	110.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=1.38;SOR=0.223;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,67
chr3	183663833	rs2292998	T	C	5993.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=1.842;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1961,192,0
chr3	183664873	rs1554395	C	T	190.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.22;SOR=3.611;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr3	183665062	rs1016752	G	C	3310.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.78;SOR=2.016;VQSLOD=19.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1060,93,0
chr3	183669396	rs4148586	C	T	888.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=25;ExcessHet=3.9794;FS=3.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=0.346;SOR=0.257;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,17:25:99:535,0,218
chr3	183669932	.	CTTT	C,CT	690.87	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.11;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.67;ReadPosRankSum=0.989;SOR=1.828;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,8,4:17:88:447,88,108,191,0,150
chr3	183670633	rs56343575	C	T	97.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:98:105,0,98
chr3	183670642	rs4148585	A	G	696.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.80;SOR=5.670;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:309,21,0
chr3	183670672	rs3817404	C	A	442.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.429e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=-8.200e-01;SOR=2.049;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:251,0,138
chr3	183677501	rs4148584	A	C	329.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150e-01;DB;DP=38;ExcessHet=3.0103;FS=2.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-1.640e-01;SOR=0.337;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,15:38:99:338,0,605
chr3	183677761	.	A	G	86.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.32;ReadPosRankSum=-6.520e-01;SOR=1.609;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:95:95,0,109
chr3	183679532	rs6443924	A	G	7397.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=3.016;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2117,174,0
chr3	183682695	rs2271936	T	C	223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=9;ExcessHet=3.9794;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.59;SOR=0.105;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:172,0,134
chr3	183682897	rs1879257	G	A	1894.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.040e-01;DB;DP=65;ExcessHet=3.9794;FS=4.575;MQ=59.86;MQRankSum=1.02;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=0.864;SOR=0.390;VQSLOD=2.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,39:65:99:1072,0,791
chr3	183685249	rs4148579	T	C	283.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.86;SOR=4.174;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr3	183685534	rs939336	A	G	5882.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=1.097;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1853,183,0
chr3	183689989	rs3805111	G	A	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=0.906;SOR=0.693;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:184,0,160
chr3	183696102	rs11287890	AT	A	75.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.52;SOR=1.609;VQSLOD=5.25;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:6:1|1:183696102_AT_A:85,6,0:183696102
chr3	183696115	rs4148577	T	C	69.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:29:0|1:183696102_AT_A:76,0,29:183696102
chr3	183696402	rs1132776	A	G	5142.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=0.972;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1740,180,0
chr3	183699516	rs7636910	T	C	1285.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=0.355;SOR=0.931;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:244,0,360
chr3	183699781	rs2872247	A	C	668.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.10;DB;DP=18;ExcessHet=3.9794;FS=1.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.30;ReadPosRankSum=0.473;SOR=1.410;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:344,0,189
chr3	183700211	rs2293001	C	T	1510.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=-5.210e-01;SOR=0.648;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:471,0,350
chr3	183700928	rs2313212	A	G	2003.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.03;SOR=2.753;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:618,54,0
chr3	183702275	rs4148575	A	G	554.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.71;SOR=5.283;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr3	183705184	rs3749438	G	A	225.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.95;ReadPosRankSum=-9.670e-01;SOR=1.863;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,1:3:32:32,0,68
chr3	183706630	rs6443926	A	C	4914.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=1.593;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1946,177,0
chr3	183706945	.	CAA	C	558.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.03;MQRankSum=0.00;QD=24.27;ReadPosRankSum=-4.090e-01;SOR=1.675;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:20:33,0,20
chr3	183732314	rs67088806	GA	G,GAA	325.69	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.65;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.57;ReadPosRankSum=1.74;SOR=2.494;VQSLOD=4.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,11,4:16:74:300,74,94,244,0,336
chr3	183749731	rs939334	T	C	634.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=-3.030e-01;SOR=0.425;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:95:95,0,184
chr3	183750907	.	ATT	A	654.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.680e-01;DP=24;ExcessHet=6.9897;FS=2.317;MQ=59.88;MQRankSum=0.00;QD=7.98;ReadPosRankSum=-5.070e-01;SOR=0.372;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:24:99:184,0,316
chr3	183752964	rs77099580	A	C	1415.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.690e-01;DB;DP=118;ExcessHet=3.0103;FS=2.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=1.98;SOR=0.920;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,54:118:99:1424,0,1799
chr3	183753182	rs56168811	G	C	280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.964e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-1.410e-01;SOR=1.179;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:289,0,342
chr3	183753777	rs36092077	G	A	1988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=66;ExcessHet=3.9794;FS=0.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=1.90;SOR=0.818;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,40:66:99:1106,0,582
chr3	183754029	rs6792482	T	C	2599.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=1.38;SOR=0.604;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:396,0,526
chr3	183754045	rs6779545	C	A	2457.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.665e+00;DB;DP=24;ExcessHet=3.9794;FS=0.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.72;ReadPosRankSum=0.714;SOR=0.566;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:353,0,491
chr3	183754294	rs6443930	G	C	6623.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=119;ExcessHet=3.9794;FS=3.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.532;SOR=0.864;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,70:119:99:1752,0,1212
chr3	183754768	rs71318351	G	A	214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.71;ReadPosRankSum=0.912;SOR=0.922;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:223,0,425
chr3	183754825	rs11448445	C	CT	422.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=0.886;SOR=0.880;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:30:176,0,30
chr3	183755822	rs1000952	G	A	10416.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.09;SOR=1.355;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3259,318,0
chr3	183756426	rs6799766	T	C	22743.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MQ=53.07;POSITIVE_TRAIN_SITE;QD=31.54;SOR=0.838;VQSLOD=1.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,241:241:99:7522,723,0
chr3	183756702	rs6789754	G	A	15844.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=31.88;SOR=1.117;VQSLOD=4.00;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,166:166:99:4882,497,0
chr3	183756742	rs55674402	C	T	3068.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.727;DB;DP=178;ExcessHet=3.9794;FS=1.899;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.399;SOR=0.578;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:104,74:178:99:1705,0,2492
chr3	183756780	rs6765152	A	C	16672.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=31.76;SOR=1.001;VQSLOD=4.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4825,465,0
chr3	183756808	rs6789882	G	A	17377.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.51;SOR=1.496;VQSLOD=19.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4635,342,0
chr3	183756813	rs6789682	C	T	12069.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984e+00;DB;DP=106;ExcessHet=3.9794;FS=14.908;MQ=60.00;MQRankSum=0.00;QD=30.33;ReadPosRankSum=0.654;SOR=0.268;VQSLOD=10.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,71:106:99:1804,0,986
chr3	183756836	rs11274156	A	AT	14440.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=1.966;VQSLOD=6.39;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,80:80:99:1|1:183756836_A_AT:3527,244,0:183756836
chr3	183756837	rs59505859	G	GTCAGTCCAAATT	14440.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.98;SOR=2.359;VQSLOD=4.51;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,73:73:99:1|1:183756836_A_AT:3527,244,0:183756836
chr3	183756897	rs55953689	A	G	1057.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.38;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=0.820;SOR=1.094;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:376,0,223
chr3	183772798	rs11291187	CA	C	1196.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=1.08;SOR=1.702;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:85:85,0,197
chr3	183772821	rs6808122	G	A	1315.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.222e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.90;ReadPosRankSum=-1.750e-01;SOR=3.258;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:255,21,0
chr3	183773250	rs56333453	C	T	388.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-1.094e+00;SOR=1.022;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:397,0,449
chr3	183773771	rs6762938	C	T	236.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.210;SOR=1.270;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,81
chr3	183774762	rs6766410	C	A	4795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=141;ExcessHet=6.9897;FS=2.474;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=0.494;SOR=0.907;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,60:141:99:1412,0,2016
chr3	183774872	rs11432832	G	GA	8365.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.25;SOR=2.395;VQSLOD=4.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2376,201,0
chr3	183776098	rs7628673	T	C	779.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=5.994;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr3	183776469	rs7617316	C	T	4791.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=2.444;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1275,117,0
chr3	183776590	rs7631265	T	A	1154.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.96;SOR=3.767;VQSLOD=19.72;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,8:8:24:317,24,0
chr3	183777210	rs56244916	C	T	451.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.37;DB;DP=46;ExcessHet=3.0103;FS=5.179;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.42;SOR=2.428;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,14:46:99:460,0,1019
chr3	183777919	rs6807271	G	A	5192.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.756e+00;DB;DP=108;ExcessHet=6.9897;FS=0.373;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-8.950e-01;SOR=0.729;VQSLOD=6.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,62:108:99:1657,0,1286
chr3	183778010	rs6807362	G	C	9647.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=205;ExcessHet=6.9897;FS=1.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=1.09;SOR=0.814;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,109:205:99:3049,0,2600
chr3	183778298	rs6807670	G	A	3705.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.24;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=0.353;SOR=1.144;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1855,135,0
chr3	183815439	rs6765267	A	G	1500.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=25;ExcessHet=6.9897;FS=1.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.617;SOR=0.527;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:359,0,364
chr3	183818416	rs7627615	G	A	10801.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=0.805;SOR=0.603;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,64:118:99:1672,0,1229
chr3	183818511	rs55683908	A	G	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109e+00;DB;DP=51;ExcessHet=3.0103;FS=6.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.95;ReadPosRankSum=1.57;SOR=0.180;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,18:51:99:363,0,927
chr3	183818857	rs62285844	A	G	60.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:68,0,32
chr3	183819155	rs7432211	T	C	1954.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=83;ExcessHet=3.9794;FS=2.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-5.470e-01;SOR=0.915;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:831,0,1307
chr3	183822366	rs13090616	T	G	117.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.47;SOR=0.693;VQSLOD=18.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:134,12,0
chr3	183823576	rs4912524	T	C	9464.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.45;SOR=2.206;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2716,248,0
chr3	183823863	rs150341032	G	GAAGA	2969.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420e-01;DB;DP=139;ExcessHet=3.0103;FS=6.406;MQ=60.00;MQRankSum=0.00;QD=21.36;ReadPosRankSum=-7.990e-01;SOR=1.232;VQSLOD=4.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:64,75:139:99:2978,0,2891
chr3	183856549	rs6787322	A	G	622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.750e-01;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=1.44;SOR=0.760;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:156,0,265
chr3	183904232	rs1709624	T	A	7468.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.50;ReadPosRankSum=0.313;SOR=0.534;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2163,168,0
chr3	183905309	rs35315125	G	C	1214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=106;ExcessHet=3.0103;FS=3.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=1.55;SOR=0.800;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,47:106:99:1223,0,1483
chr3	183907879	rs17774065	G	A	118.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=-8.420e-01;SOR=1.981;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:126,0,28
chr3	183951135	rs729377	C	T	11937.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=319;ExcessHet=6.9897;FS=1.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=-6.040e-01;SOR=0.595;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:165,154:319:99:3779,0,4132
chr3	183951431	rs902417	C	T	1659.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538e+00;DB;DP=37;ExcessHet=3.9794;FS=2.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=1.72;SOR=1.016;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,22:37:99:642,0,455
chr3	183951880	rs875038	T	C	988.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.609e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=0.151;SOR=0.767;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:343,0,355
chr3	183952130	rs112534894	A	G	2371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=201;ExcessHet=3.0103;FS=4.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.335;SOR=0.962;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,96:201:99:2380,0,2399
chr3	183953120	.	A	T	56.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.037e+00;DP=34;ExcessHet=3.0103;FS=27.609;MQ=60.00;MQRankSum=0.00;QD=1.66;ReadPosRankSum=2.23;SOR=4.778;VQSLOD=5.18;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,9:34:65:0|1:183953120_A_T:65,0,668:183953120
chr3	183956888	rs76034008	G	A	116.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=12;ExcessHet=3.0103;FS=10.414;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=-6.540e-01;SOR=0.012;VQSLOD=18.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:125,0,308
chr3	183957095	rs843333	A	C	781.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-01;DB;DP=20;ExcessHet=6.9897;FS=5.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.068;SOR=1.358;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,5:20:80:80,0,384
chr3	183957218	rs113200353	C	T	748.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.236e+00;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=1.81;SOR=0.743;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,33:65:99:757,0,859
chr3	183962862	rs77177287	G	A	521.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=2.60;SOR=0.822;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:530,0,579
chr3	183966818	rs2233462	C	A	1434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691e+00;DB;DP=136;ExcessHet=3.0103;FS=1.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=-5.520e-01;SOR=0.875;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,58:136:99:1443,0,2268
chr3	183967844	rs706586	T	A	1183.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=-4.700e-01;SOR=0.334;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:287,0,194
chr3	183975365	rs7633387	C	T	20729.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=225;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=0.801;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,225:225:99:6951,675,0
chr3	183976103	rs11546878	C	T	1215.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.570e-01;DB;DP=75;ExcessHet=3.0103;FS=0.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=-4.950e-01;SOR=0.533;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,46:75:99:0|1:183976103_C_T:1224,0,1100:183976103
chr3	183976108	rs902415	T	C	3491.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=75;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-3.550e-01;SOR=0.696;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,29:75:99:1|0:183976103_C_T:850,0,1834:183976103
chr3	183978781	rs843353	T	C	678.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=1.66;SOR=0.976;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:102,0,31
chr3	183993798	rs28690803	G	T	107.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.47;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	183993908	rs199785048	G	A	129.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.62;ReadPosRankSum=0.400;SOR=1.075;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:138,0,234
chr3	183994536	rs843371	A	G	7985.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242e+00;DB;DP=90;ExcessHet=3.0103;FS=2.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.35;ReadPosRankSum=0.212;SOR=0.509;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3190,270,0
chr3	183995341	rs1001817	C	T	1039.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.772e+00;DB;DP=28;ExcessHet=3.9794;FS=3.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.581;SOR=0.137;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:523,0,419
chr3	183995854	rs2272471	G	A	2692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.501;SOR=0.703;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,42:78:99:1071,0,844
chr3	183996068	rs3752904	C	T	2368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=94;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=1.63;SOR=0.708;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,42:94:99:1052,0,1221
chr3	183996213	rs843372	C	T	3493.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.154e+00;DB;DP=42;ExcessHet=3.0103;FS=6.012;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=2.30;SOR=1.126;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:42:99:1300,119,0
chr3	183996484	rs140658066	CTTTCTTCT	C	1474.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=29;ExcessHet=3.9794;FS=8.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=0.516;SOR=0.051;VQSLOD=5.11;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,20:29:99:0|1:183996484_CTTTCTTCT_C:813,0,1090:183996484
chr3	183996511	rs1387976	C	T	1398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.778e+00;DB;DP=25;ExcessHet=3.9794;FS=5.471;MQ=60.00;MQRankSum=0.00;QD=27.41;ReadPosRankSum=-1.518e+00;SOR=0.095;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,17:25:99:0|1:183996484_CTTTCTTCT_C:732,0,1000:183996484
chr3	184003194	rs1687230	C	T	1426.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.342e+00;DB;DP=15;ExcessHet=3.0103;FS=1.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=-1.507e+00;SOR=0.444;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:539,45,0
chr3	184005785	rs112975088	A	G	794.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.411e+00;DB;DP=74;ExcessHet=3.0103;FS=0.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=1.47;SOR=0.567;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,34:74:99:803,0,1032
chr3	184007518	rs111476402	C	T	1124.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=-1.129e+00;SOR=0.764;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,43:74:99:1133,0,694
chr3	184009311	rs55942143	T	G	1179.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=91;ExcessHet=3.0103;FS=0.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-9.580e-01;SOR=0.818;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,43:91:99:1188,0,1161
chr3	184009492	rs113905321	C	CAGGGTGGGGCAA	857.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=6;ExcessHet=3.0103;FS=4.482;MQ=60.00;MQRankSum=0.00;QD=30.18;ReadPosRankSum=-3.280e-01;SOR=2.935;VQSLOD=4.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr3	184009586	rs35637422	A	G	520.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=1.28;SOR=0.527;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr3	184010048	rs3914188	G	C	8491.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=214;ExcessHet=1.5490;FS=6.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=-6.230e-01;SOR=1.031;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,91:214:99:2491,0,3428
chr3	184020100	rs71185698	C	CA	2582.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.76;POSITIVE_TRAIN_SITE;QD=35.11;SOR=2.439;VQSLOD=6.27;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,27:27:81:990,81,0
chr3	184020542	rs11545169	G	T	1187.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.872;DB;DP=75;ExcessHet=3.0103;FS=3.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-1.275e+00;SOR=1.114;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,43:75:99:1196,0,748
chr3	184025335	rs111799818	G	C	992.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DB;DP=69;ExcessHet=3.0103;FS=0.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-8.830e-01;SOR=0.538;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,35:69:99:1001,0,1028
chr3	184026703	rs6845	C	T	1973.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370e-01;DB;DP=79;ExcessHet=3.9794;FS=3.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=-2.520e-01;SOR=0.503;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,35:79:99:948,0,1177
chr3	184026723	rs1049448	C	A	1096.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.312e+00;DB;DP=78;ExcessHet=3.0103;FS=0.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=0.403;SOR=0.544;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,44:78:99:1105,0,903
chr3	184033346	rs111493976	T	A	1783.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DB;DP=85;ExcessHet=3.9794;FS=4.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-2.390e-01;SOR=0.410;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,34:85:99:875,0,1384
chr3	184033664	rs200622796	CAGG	C	375.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.044e+00;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.14;ReadPosRankSum=0.670;SOR=0.593;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,11:37:99:384,0,1196
chr3	184035860	rs113447694	A	G	235.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=0.489;SOR=2.833;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:17:244,0,17
chr3	184037533	rs13319149	A	G	8624.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=1.146;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2767,273,0
chr3	184038969	rs4912537	C	T	705.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.090e-01;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.657;SOR=0.951;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:322,0,423
chr3	184039666	rs2178403	A	G	15284.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.755;DB;DP=182;ExcessHet=3.0103;FS=0.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=-5.030e-01;SOR=0.804;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,182:182:99:6015,546,0
chr3	184039766	rs111659103	AAGGAGAAGC	A	1628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110e-01;DB;DP=95;ExcessHet=3.0103;FS=3.812;MQ=60.00;MQRankSum=0.00;QD=17.14;ReadPosRankSum=0.493;SOR=0.414;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,44:95:99:1637,0,1941
chr3	184043925	rs34901174	A	AAC	130.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=3;ExcessHet=3.9794;FS=8.751;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=0.00;SOR=3.912;VQSLOD=1.14;culprit=FS	GT:AD:DP:GQ:PL	0/1:1,2:3:7:53,0,7
chr3	184045410	rs2230570	T	C	2539.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206e+00;DB;DP=118;ExcessHet=3.9794;FS=2.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.957;SOR=0.907;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,56:118:99:1348,0,1796
chr3	184045799	rs939317	A	G	15125.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.720e-01;DB;DP=159;ExcessHet=3.0103;FS=0.728;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=-2.757e+00;SOR=0.564;VQSLOD=22.37;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5113,476,0
chr3	184046042	rs1881975	A	G	553.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.308e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=59.35;MQRankSum=-3.960e-01;POSITIVE_TRAIN_SITE;QD=29.16;ReadPosRankSum=-3.750e-01;SOR=1.179;VQSLOD=0.581;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr3	184046355	rs1879244	C	T	5240.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.312;DB;DP=69;ExcessHet=3.0103;FS=8.841;MQ=59.96;MQRankSum=0.984;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=0.767;SOR=0.233;VQSLOD=0.169;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2055,206,0
chr3	184048859	rs200904694	TTGAC	T	321.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=10;ExcessHet=3.0103;FS=4.228;MQ=60.00;MQRankSum=0.00;QD=32.13;ReadPosRankSum=1.83;SOR=2.833;VQSLOD=4.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:97:330,0,97
chr3	184056101	rs1881973	G	C	2606.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=58;ExcessHet=3.9794;FS=2.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=1.07;SOR=0.436;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,34:58:99:1056,0,678
chr3	184062776	rs9839000	A	G	2842.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;DB;DP=117;ExcessHet=3.9794;FS=3.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-1.640e-01;SOR=0.964;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,52:117:99:1393,0,1690
chr3	184063382	rs73187642	C	T	914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462e+00;DB;DP=75;ExcessHet=3.0103;FS=4.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-5.200e-01;SOR=0.969;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,36:75:99:923,0,1062
chr3	184063644	rs111875352	G	A	106.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.84;SOR=2.833;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr3	184064960	rs200802091	TAAC	T	417.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DB;DP=23;ExcessHet=3.0103;FS=3.203;MQ=60.00;MQRankSum=0.00;QD=18.14;ReadPosRankSum=1.66;SOR=0.165;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:426,0,597
chr3	184070588	rs2228292	C	G	471.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=47;ExcessHet=3.0103;FS=4.094;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=1.13;SOR=0.503;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:480,0,760
chr3	184070675	rs3749223	A	G	4228.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.076e+00;DB;DP=42;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=-3.360e-01;SOR=0.469;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1330,126,0
chr3	184070901	rs111656822	C	T	2913.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148e+00;DB;DP=228;ExcessHet=3.0103;FS=4.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.761;SOR=0.461;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,121:228:99:2922,0,2663
chr3	184071063	rs9820367	G	C	7124.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=231;ExcessHet=6.9897;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=0.240;SOR=0.628;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,103:231:99:2729,0,3369
chr3	184071131	.	C	CCGG	2583.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.066e+00;DP=132;ExcessHet=3.0103;FS=2.319;MQ=60.00;MQRankSum=0.00;QD=19.57;ReadPosRankSum=-1.230e-01;SOR=0.959;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:65,67:132:99:2592,0,2822
chr3	184072632	rs3749222	G	C	1157.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=90;ExcessHet=3.0103;FS=3.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.760;SOR=1.139;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1166,0,1101
chr3	184075958	rs41266271	C	T	1623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.900e+00;DB;DP=120;ExcessHet=3.0103;FS=2.325;MQ=59.86;MQRankSum=-9.670e-01;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=0.116;SOR=0.509;VQSLOD=1.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:59,61:120:99:1632,0,1673
chr3	184084846	rs28467468	T	C	222.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.816;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:78,0,67
chr3	184091149	rs6142	G	T	2088.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.472e+00;DB;DP=68;ExcessHet=3.9794;FS=1.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=1.46;SOR=0.864;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,37:68:99:1048,0,916
chr3	184093527	rs2280740	C	T	4299.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DB;DP=121;ExcessHet=3.9794;FS=1.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=1.20;SOR=0.606;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,70:121:99:1908,0,1259
chr3	184094183	rs956732	A	G	3069.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.060e-01;DB;DP=95;ExcessHet=3.9794;FS=1.709;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.657;SOR=0.822;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,44:95:99:1184,0,1405
chr3	184099342	rs3749228	G	C	5148.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.059e+00;DB;DP=396;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=2.20;SOR=0.684;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:172,224:396:99:5157,0,4077
chr3	184100958	.	CG	C	303.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DP=21;ExcessHet=6.9897;FS=1.035;MQ=59.86;MQRankSum=0.00;QD=4.82;ReadPosRankSum=0.538;SOR=0.718;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,8:21:99:166,0,308
chr3	184101563	.	CT	C	159.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.95;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:41:41,0,61
chr3	184103903	rs16858780	A	C	2887.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=135;ExcessHet=3.9794;FS=0.988;MQ=59.96;MQRankSum=0.866;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-6.900e-02;SOR=0.780;VQSLOD=2.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,64:135:99:1512,0,1826
chr3	184106025	rs3064288	G	GTCCA	498.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.68;ReadPosRankSum=0.792;SOR=0.990;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:184106025_G_GTCCA:110,0,191:184106025
chr3	184106034	rs72001388	TCCA	T	175.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.53;ReadPosRankSum=1.44;SOR=0.693;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,5:10:99:1|0:184106025_G_GTCCA:184,0,183:184106025
chr3	184106038	.	TC	T	179.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.92;ReadPosRankSum=0.700;SOR=0.941;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:1|0:184106025_G_GTCCA:188,0,152:184106025
chr3	184106175	rs77635828	G	GCATC,GCATCCATC	706.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.90;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.70;ReadPosRankSum=0.00;SOR=2.030;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,3:8:99:336,126,111,207,0,196
chr3	184106493	rs2293606	T	G	1913.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.188e+00;DB;DP=183;ExcessHet=3.0103;FS=1.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-1.000e-03;SOR=0.827;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,87:183:99:1922,0,2469
chr3	184144646	rs7630982	G	A	4325.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;DB;DP=173;ExcessHet=3.9794;FS=1.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.534;SOR=0.602;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,91:173:99:2288,0,2030
chr3	184280169	rs115131679	G	A	760.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=43;ExcessHet=3.9794;FS=4.579;MQ=60.00;MQRankSum=0.00;QD=10.13;ReadPosRankSum=0.862;SOR=0.537;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,18:43:99:384,0,728
chr3	184289152	rs13069661	A	G	2471.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=95;ExcessHet=3.9794;FS=1.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=0.964;SOR=0.609;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,51:95:99:1209,0,1013
chr3	184402122	rs9290796	G	A	800.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.777e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=-2.000e-03;SOR=0.619;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:311,0,100
chr3	184402448	rs77089084	C	G	272.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.68;SOR=1.609;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:281,0,261
chr3	184428903	rs9872799	T	G	6147.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=148;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-9.920e-01;SOR=0.685;VQSLOD=6.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,72:148:99:1980,0,2057
chr3	184429133	rs10656187	A	ATCC	6314.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.434;DB;DP=91;ExcessHet=6.9897;FS=1.867;MQ=59.98;MQRankSum=0.00;QD=19.19;ReadPosRankSum=0.256;SOR=0.821;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,45:91:99:1867,0,1853
chr3	184429414	rs10937187	C	A	7772.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.896e+00;DB;DP=202;ExcessHet=6.9897;FS=3.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.865;SOR=0.495;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,103:202:99:2837,0,2860
chr3	184429718	rs12011	A	G	1103.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=25;ExcessHet=6.9897;FS=4.453;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=1.14;SOR=1.981;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:439,0,397
chr3	184542693	.	AT	A	509.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.92;MQRankSum=0.00;QD=6.71;ReadPosRankSum=1.36;SOR=0.769;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:24:99:206,0,123
chr3	184612319	rs369634631	TAC	T	46.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.72;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:55:55,0,60
chr3	184616504	rs9845800	C	T	1379.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.749e+00;DB;DP=20;ExcessHet=1.5490;FS=3.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=-3.530e-01;SOR=1.631;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:729,59,0
chr3	184631103	rs9821657	G	A	2801.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.38;SOR=2.891;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:399,36,0
chr3	184633247	rs4686879	A	C	2925.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.428;DB;DP=41;ExcessHet=3.9794;FS=0.753;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=1.19;SOR=0.610;VQSLOD=6.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1302,123,0
chr3	184642587	rs11391596	A	AT	1236.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=-1.140e-01;SOR=0.839;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,13:16:15:288,0,15
chr3	184644226	rs9290804	G	A	433.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.19;SOR=5.136;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	184646028	rs4589907	A	G	367.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=0.253;SOR=2.303;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr3	184647413	rs4643688	T	C	5253.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.351;DB;DP=53;ExcessHet=3.0103;FS=2.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.51;ReadPosRankSum=0.918;SOR=0.435;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1672,159,0
chr3	184654166	rs6444004	A	G	2955.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.84;SOR=2.891;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:771,69,0
chr3	184654303	rs59011109	C	CTGTGTGTG	117.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.62;SOR=2.833;VQSLOD=6.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	184675359	rs4501092	T	C	9653.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.48;SOR=2.186;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2611,237,0
chr3	184682214	rs6799328	T	C	1512.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=2.687;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:244,21,0
chr3	184684313	rs4470487	G	A	1683.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.305e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=0.325;SOR=2.179;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:611,48,0
chr3	184684761	rs11382420	C	CT	163.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.41;SOR=4.174;VQSLOD=4.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:78,9,0
chr3	184689269	rs7621783	G	A	384.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=-5.240e-01;SOR=1.061;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr3	184700356	rs4572747	A	C	2885.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e-01;DB;DP=46;ExcessHet=3.9794;FS=1.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=-5.130e-01;SOR=0.558;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1288,137,0
chr3	184714014	rs9860814	C	T	844.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.030e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.60;ReadPosRankSum=1.000e-03;SOR=0.892;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:365,30,0
chr3	184717703	rs2291737	T	C	1798.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.23;DB;DP=19;ExcessHet=3.9794;FS=1.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.07;ReadPosRankSum=0.603;SOR=0.333;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:678,57,0
chr3	184801494	rs9845482	G	A	1111.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.12;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=2.24;SOR=0.884;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:319,24,0
chr3	184801532	rs9865058	T	C	529.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=2.39;SOR=0.941;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr3	184907294	rs11363706	TA	T	772.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=4.712;VQSLOD=6.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr3	184907503	.	CTTT	C	595.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DP=15;ExcessHet=6.9897;FS=1.426;MQ=59.56;MQRankSum=0.524;QD=17.03;ReadPosRankSum=1.41;SOR=1.179;VQSLOD=0.280;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:15:99:204,0,108
chr3	184935708	rs55702263	A	T	319.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=57.42;MQRankSum=-5.240e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.98;ReadPosRankSum=1.28;SOR=1.802;VQSLOD=-2.326e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:213,15,0
chr3	184935807	rs35531967	A	C	1304.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.917;DB;DP=31;ExcessHet=3.9794;FS=2.427;MQ=59.67;MQRankSum=-2.180e-01;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=-4.350e-01;SOR=0.419;VQSLOD=0.459;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,28:31:2:873,2,0
chr3	184946877	rs2377372	T	C	248.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=3.912;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr3	184971024	.	TA	T	272.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.197;DP=27;ExcessHet=6.9897;FS=3.502;MQ=60.00;MQRankSum=0.00;QD=4.63;ReadPosRankSum=1.03;SOR=1.106;VQSLOD=5.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,8:27:99:132,0,220
chr3	185046766	rs9859234	T	A	571.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=-9.670e-01;SOR=1.519;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:30:286,30,0
chr3	185046909	rs34308085	AT	A	3427.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.904;SOR=0.674;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1802,180,0
chr3	185046975	rs9863304	T	C	8121.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.790e-01;DB;DP=89;ExcessHet=3.0103;FS=1.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=-2.250e-01;SOR=0.837;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2682,267,0
chr3	185146232	rs16860041	A	C	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=1.06;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:423,0,235
chr3	185155430	rs113427759	C	CT,CTT	2520.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.05;DB;DP=39;ExcessHet=3.0103;FS=6.767;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=-1.277e+00;SOR=1.543;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,19,20:39:99:1119,520,411,448,0,387
chr3	185155482	rs2304815	A	C	716.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=18;ExcessHet=3.9794;FS=1.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=1.65;SOR=0.307;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:258,0,319
chr3	185167519	rs11322943	AT	A	331.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.36;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-7.120e-01;SOR=1.609;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:0:94,0,0
chr3	185183418	rs667526	G	C	882.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.24;SOR=6.273;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr3	185212593	rs6798873	T	C	1881.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=41;ExcessHet=3.9794;FS=0.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=1.43;SOR=0.590;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,14:41:99:298,0,730
chr3	185226396	rs6788865	A	G	690.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.57;ReadPosRankSum=-5.240e-01;SOR=1.402;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:83:276,0,83
chr3	185229464	rs61730237	T	C	3275.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=62;ExcessHet=3.9794;FS=0.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=-7.780e-01;SOR=0.644;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,34:62:99:803,0,623
chr3	185232169	rs1837882	G	A	3828.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235e+00;DB;DP=55;ExcessHet=3.9794;FS=1.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=-7.030e-01;SOR=0.547;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,31:55:99:682,0,628
chr3	185253095	rs642188	T	C	1415.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.83;SOR=4.804;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:550,39,0
chr3	185300395	rs7651346	G	A	3248.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.204e+00;DB;DP=81;ExcessHet=6.9897;FS=3.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=1.34;SOR=0.913;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,40:81:99:965,0,1053
chr3	185304018	rs17523471	T	C	4780.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=59;ExcessHet=3.9794;FS=6.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=0.540;SOR=0.396;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,23:59:99:550,0,964
chr3	185307879	rs11924016	A	T	2300.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=0.421;SOR=0.732;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:401,0,247
chr3	185316616	rs4624587	G	A	1232.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=2.621;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:252,18,0
chr3	185318804	rs13100034	G	A	1101.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DB;DP=10;ExcessHet=3.9794;FS=2.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=1.44;SOR=1.775;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:79:79,0,255
chr3	185327012	rs73175547	C	T	1737.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257e+00;DB;DP=53;ExcessHet=3.9794;FS=2.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.99;SOR=0.432;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,32:53:99:833,0,584
chr3	185329756	rs13091418	C	G	425.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.42;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:75,0,29
chr3	185330189	rs6783023	A	G	560.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=-9.300e-01;SOR=0.368;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:174,0,129
chr3	185330303	rs73175548	C	T	2407.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.257e+00;DB;DP=74;ExcessHet=3.9794;FS=6.862;MQ=60.00;MQRankSum=0.00;QD=16.16;ReadPosRankSum=1.11;SOR=0.327;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,43:74:99:0|1:185330303_C_T:1021,0,1174:185330303
chr3	185330304	rs371821065	TTGA	T	3807.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=75;ExcessHet=3.9794;FS=8.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=0.110;SOR=1.257;VQSLOD=5.36;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,31:75:99:1|0:185330303_C_T:1134,0,1747:185330303
chr3	185330631	rs6785918	A	G	383.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=0.319;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:114,0,30
chr3	185331165	rs6762208	C	A	4294.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=91;ExcessHet=3.9794;FS=0.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.383;SOR=0.616;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,32:91:99:665,0,1422
chr3	185335156	rs34765114	T	A	3018.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=0.319;SOR=1.051;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:341,0,482
chr3	185339575	rs13076556	A	G	591.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.003e+00;DB;DP=12;ExcessHet=6.9897;FS=2.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=0.259;SOR=0.319;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:50:50,0,265
chr3	185341970	rs1823238	G	A	3090.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.821e+00;DB;DP=47;ExcessHet=3.9794;FS=2.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=1.32;SOR=1.022;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:609,0,678
chr3	185347363	rs34843707	C	CA	152.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.524;SOR=0.180;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:34:59,0,34
chr3	185347459	rs6774871	A	G	3153.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DB;DP=43;ExcessHet=3.9794;FS=0.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=0.875;SOR=0.822;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:479,0,548
chr3	185416395	rs11919090	C	T	736.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.9794;FS=5.905;MQ=60.00;MQRankSum=0.00;QD=19.92;ReadPosRankSum=-1.140e-01;SOR=0.093;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:135,0,192
chr3	185431283	rs17826758	A	G	2145.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.73;DB;DP=101;ExcessHet=3.9794;FS=5.996;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.041;SOR=0.550;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,43:101:99:1155,0,1445
chr3	185541213	rs11717959	G	T	1782.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=7.614;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:760,57,0
chr3	185635856	rs2735117	T	C	106.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.45;SOR=1.179;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	185638725	rs147281585	AATTG	A	433.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.97;SOR=4.804;VQSLOD=5.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr3	185655454	rs1862904	A	G	2643.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=46;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.71;ReadPosRankSum=0.269;SOR=0.428;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1881,138,0
chr3	185802071	rs373161638	TAA	T	329.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=59.55;MQRankSum=0.366;QD=9.99;ReadPosRankSum=0.215;SOR=0.836;VQSLOD=0.587;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:41:41,0,74
chr3	185823565	rs62290908	C	T	368.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.37;ReadPosRankSum=0.830;SOR=0.748;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,15:44:99:377,0,885
chr3	185826028	rs872602	A	G	1305.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.840e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=-1.175e+00;SOR=1.958;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:398,36,0
chr3	185826546	rs869401	G	A	1428.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=16;ExcessHet=3.0103;FS=6.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.23;ReadPosRankSum=0.980;SOR=4.062;VQSLOD=12.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:675,48,0
chr3	185867773	rs112047120	ATG	A	43.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.626e+00;DB;DP=27;ExcessHet=3.0103;FS=8.403;MQ=60.00;MQRankSum=0.00;QD=1.60;ReadPosRankSum=-6.800e-02;SOR=0.036;VQSLOD=3.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,4:27:52:52,0,785
chr3	185879296	rs13073156	T	C	3213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=2.232;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:97:1015,97,0
chr3	185929467	rs7619111	C	T	275.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=2.833;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:292,24,0
chr3	185960173	rs57979155	GCA	G	273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.481;DB;DP=11;ExcessHet=3.0103;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=-9.080e-01;SOR=2.833;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:282,0,147
chr3	185960192	rs6799929	A	G	1252.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.931e+00;DB;DP=16;ExcessHet=3.9794;FS=3.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=1.43;SOR=0.146;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:577,48,0
chr3	185960414	rs12489063	G	A	4967.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DB;DP=172;ExcessHet=3.9794;FS=5.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=1.03;SOR=0.493;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,88:172:99:2159,0,2080
chr3	185960671	rs6778456	C	T	319.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.720e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=-7.030e-01;SOR=1.981;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr3	185975470	rs372307284	CTT	C	414.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-02;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.55;ReadPosRankSum=0.795;SOR=0.527;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,4:16:79:79,0,323
chr3	185982955	rs3815620	G	A	4412.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=1.139;VQSLOD=19.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2115,217,0
chr3	185982972	rs3815619	T	C	3738.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=81;ExcessHet=1.5490;FS=2.372;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=-3.740e-01;SOR=0.502;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2505,243,0
chr3	185990096	rs2193587	C	T	8788.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.478e+00;DB;DP=86;ExcessHet=3.0103;FS=0.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=1.39;SOR=0.773;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2923,258,0
chr3	185993296	.	A	ATAGT	1639.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DP=124;ExcessHet=3.0103;FS=2.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=1.02;SOR=0.919;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:80,44:124:99:1648,0,4203
chr3	186006566	rs710443	T	C	4434.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=188;ExcessHet=3.9794;FS=0.383;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.13;SOR=0.662;VQSLOD=6.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,92:188:99:2336,0,2302
chr3	186015283	rs3819860	A	G	464.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=51;ExcessHet=3.0103;FS=6.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-8.290e-01;SOR=1.795;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,17:51:99:473,0,872
chr3	186015303	rs3819859	A	G	378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=48;ExcessHet=3.0103;FS=4.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=0.771;SOR=1.410;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,14:48:99:387,0,791
chr3	186015315	rs3819858	T	C	396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=45;ExcessHet=3.0103;FS=1.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=0.356;SOR=1.113;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,14:45:99:405,0,681
chr3	186015438	rs3819857	C	T	97.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.00;SOR=0.495;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:105,0,155
chr3	186015743	rs888385	C	T	493.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.86;ReadPosRankSum=0.524;SOR=0.430;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:186015743_C_T:225,15,0:186015743
chr3	186015744	rs66460112	G	C	493.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.86;ReadPosRankSum=0.524;SOR=0.430;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:186015743_C_T:225,15,0:186015743
chr3	186287649	rs12330139	C	T	299.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.27;ReadPosRankSum=0.967;SOR=3.056;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	186287777	rs2889755	T	C	2265.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.33;SOR=2.448;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:579,51,0
chr3	186287980	rs12330397	T	C	4689.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.570e-01;DB;DP=59;ExcessHet=3.0103;FS=1.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=0.477;SOR=0.557;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1813,177,0
chr3	186288172	rs3806712	G	C	838.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.06;ReadPosRankSum=-1.068e+00;SOR=3.912;VQSLOD=14.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:265,18,0
chr3	186288565	rs3806714	A	G	6505.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.93;SOR=3.409;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1874,147,0
chr3	186290143	rs374076917	TA	T	1165.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.60;ReadPosRankSum=-5.980e-01;SOR=1.236;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:186290143_TA_T:661,45,0:186290143
chr3	186290145	rs368298566	TTTA	T	1165.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=37.63;ReadPosRankSum=-5.980e-01;SOR=1.236;VQSLOD=5.47;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:186290143_TA_T:661,45,0:186290143
chr3	186290155	rs2010555	G	A	1092.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.23;ReadPosRankSum=-8.420e-01;SOR=1.061;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:42:1|1:186290143_TA_T:630,42,0:186290143
chr3	186290211	rs1961331	A	C	251.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=2.303;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:186290211_A_C:135,9,0:186290211
chr3	186290213	rs1823215	G	C	251.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.93;SOR=2.303;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:186290211_A_C:135,9,0:186290211
chr3	186293588	rs2280391	A	G	3271.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=26;ExcessHet=3.0103;FS=0.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.49;ReadPosRankSum=-1.570e-01;SOR=0.502;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:836,78,0
chr3	186293819	rs56227532	T	C	592.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.640e-01;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.19;ReadPosRankSum=-1.321e+00;SOR=1.022;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,20:21:20:609,20,0
chr3	186293890	rs2280389	T	C	1045.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.86;ReadPosRankSum=0.00;SOR=2.985;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:301,21,0
chr3	186295417	rs60278421	AT	A	3038.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.23;DB;DP=43;ExcessHet=3.0103;FS=4.426;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=-5.300e-02;SOR=1.944;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,41:43:76:1034,76,0
chr3	186299614	rs6770868	G	A	474.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.95;ReadPosRankSum=1.28;SOR=0.941;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr3	186299905	rs6784026	T	C	5134.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.60;DB;DP=55;ExcessHet=3.0103;FS=2.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=-9.660e-01;SOR=1.040;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1807,165,0
chr3	186300683	rs9851299	G	T	4041.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.180e-01;DB;DP=53;ExcessHet=3.0103;FS=1.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=0.717;SOR=0.957;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1704,159,0
chr3	186301703	rs8147	A	G	6022.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.707;DB;DP=69;ExcessHet=3.0103;FS=0.716;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.50;ReadPosRankSum=-4.220e-01;SOR=0.631;VQSLOD=6.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2127,207,0
chr3	186301840	rs13326516	T	G	9305.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.540e-01;DB;DP=109;ExcessHet=3.0103;FS=2.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=0.094;SOR=0.532;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3359,326,0
chr3	186302391	rs140269415	A	ATTGTGTGTGTGTGTGTGTGTGT	1899.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.63;POSITIVE_TRAIN_SITE;QD=29.93;SOR=2.554;VQSLOD=5.75;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:50:681,50,0
chr3	186314627	rs73887965	A	G	280.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=4.174;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr3	186315059	rs57352898	CAAAAA	C	679.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.800e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.35;MQRankSum=0.00;QD=23.45;ReadPosRankSum=-3.660e-01;SOR=1.179;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:570,39,0
chr3	186330969	rs4831	C	G	3808.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086e+00;DB;DP=296;ExcessHet=3.0103;FS=0.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.963;SOR=0.722;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:146,150:296:99:3817,0,3836
chr3	186336176	rs2070635	A	G	1118.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=23;ExcessHet=3.9794;FS=1.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=-3.100e-02;SOR=0.469;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:343,0,345
chr3	186337713	rs4917	T	C	12393.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.270e-01;DB;DP=180;ExcessHet=3.0103;FS=6.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=-7.400e-01;SOR=0.338;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5436,539,0
chr3	186337827	rs2518136	T	C	5197.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DB;DP=85;ExcessHet=3.9794;FS=0.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=0.623;SOR=0.801;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1210,0,1038
chr3	186338233	rs1029353	G	A	183.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.524;SOR=0.473;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:73:104,0,73
chr3	186338382	rs4918	G	C	7449.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.217e+00;DB;DP=93;ExcessHet=3.0103;FS=0.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=0.497;SOR=0.590;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3064,278,0
chr3	186338425	rs1071592	A	C	12007.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.668e+00;DB;DP=157;ExcessHet=3.0103;FS=1.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=0.138;SOR=0.559;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:5078,470,0
chr3	186338869	rs11540663	C	T	636.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=59;ExcessHet=3.0103;FS=1.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.420;SOR=0.519;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,26:59:99:645,0,796
chr3	186358768	rs66965282	A	G	400.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.597;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.081e+00;SOR=0.569;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:409,0,353
chr3	186360409	rs3733159	T	G	3709.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.09;DB;DP=72;ExcessHet=1.5490;FS=1.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=-4.050e-01;SOR=0.843;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2415,215,0
chr3	186363728	rs6808434	A	C	407.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.30;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=-2.630e-01;SOR=0.859;VQSLOD=0.815;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:265,0,170
chr3	186370333	rs1131364	G	T	2464.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.34;SOR=0.954;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1071,114,0
chr3	186383513	rs6765529	C	T	988.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.91;SOR=4.255;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:241,18,0
chr3	186386664	rs5855108	T	TA	3078.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.309e+00;DB;DP=36;ExcessHet=3.0103;FS=2.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=0.622;SOR=0.403;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,34:36:56:932,56,0
chr3	186389765	rs10706995	CT	C	315.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=4.804;VQSLOD=6.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:79,9,0
chr3	186390627	rs9898	C	T	1545.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.058e+00;DB;DP=37;ExcessHet=1.5490;FS=0.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-1.225e+00;SOR=0.669;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1089,111,0
chr3	186393182	rs12493926	T	C	330.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=4.615;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr3	186394551	rs7617554	G	T	151.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=1.022;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr3	186395113	rs2228243	A	G	4832.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.250e-01;DB;DP=165;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.29;ReadPosRankSum=-3.180e-01;SOR=0.810;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:4,161:165:99:4849,364,0
chr3	186395180	rs7629680	T	C	19866.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=196;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=1.115;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,196:196:99:6198,588,0
chr3	186395572	rs1042464	A	T	7434.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.510e-01;DB;DP=115;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.77;ReadPosRankSum=1.60;SOR=1.377;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,114:115:99:3734,299,0
chr3	186435370	rs1050274	G	A	4373.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.892e+00;DB;DP=103;ExcessHet=1.5490;FS=2.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=1.51;SOR=0.514;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,102:103:99:2940,265,0
chr3	186435561	rs13072823	G	A	415.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=-1.803e+00;SOR=1.179;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:186435561_G_A:188,0,141:186435561
chr3	186435583	rs13095338	T	C	417.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.85;ReadPosRankSum=-1.718e+00;SOR=2.303;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:20:1|1:186435561_G_A:275,20,0:186435561
chr3	186435591	rs10662949	T	TCA	288.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:17:1|1:186435561_G_A:230,17,0:186435561
chr3	186437661	rs2304451	G	C	279.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=4.174;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	186437944	rs5029980	T	C	2127.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DB;DP=83;ExcessHet=3.9794;FS=1.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=0.420;SOR=0.540;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,35:83:99:791,0,1243
chr3	186438037	rs2304452	T	C	854.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=38;ExcessHet=3.0103;FS=3.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=-4.030e-01;SOR=1.581;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,27:38:99:863,0,178
chr3	186440483	rs1648714	T	C	235.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr3	186442747	rs1656920	G	C	442.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.0103;FS=3.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=-1.282e+00;SOR=2.235;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:70:74,0,70
chr3	186442833	rs1656921	G	C	1569.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.093e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=1.05;SOR=0.852;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:349,0,421
chr3	186443018	rs1656922	T	C	6183.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.693e+00;DB;DP=111;ExcessHet=3.9794;FS=2.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-1.243e+00;SOR=0.842;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,58:111:99:1345,0,1282
chr3	186444893	rs2304454	A	G	114.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:66:0|1:186444893_A_G:123,0,66:186444893
chr3	186444903	rs2304455	T	A	114.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:66:0|1:186444893_A_G:123,0,66:186444893
chr3	186445186	rs3841557	G	GA	541.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870e-01;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-1.394e+00;SOR=0.804;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,17:45:99:550,0,991
chr3	186445237	rs5030025	A	C	208.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.880e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.13;ReadPosRankSum=-1.142e+00;SOR=0.593;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,11:34:99:217,0,644
chr3	186449194	rs1648697	A	G	276.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.68;ReadPosRankSum=-8.420e-01;SOR=2.303;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:175,15,0
chr3	186449582	rs1648698	G	C	558.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.631e+00;DB;DP=12;ExcessHet=1.5490;FS=2.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-1.650e-01;SOR=0.283;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:415,36,0
chr3	186450069	rs1624569	T	C	218.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=1.65;SOR=1.402;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr3	186459475	rs5030084	C	G	605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.355e+00;DB;DP=65;ExcessHet=3.0103;FS=3.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=1.53;SOR=0.343;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,26:65:99:614,0,1107
chr3	186459646	rs5030085	G	A	663.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429e+00;DB;DP=54;ExcessHet=3.0103;FS=2.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=1.82;SOR=1.215;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:672,0,932
chr3	186459775	rs5030086	C	T	1536.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-02;DB;DP=119;ExcessHet=3.0103;FS=3.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.885;SOR=0.434;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,59:119:99:1545,0,1652
chr3	186459927	rs710446	T	C	6336.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=150;ExcessHet=6.9897;FS=4.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-7.380e-01;SOR=0.483;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,58:150:99:1523,0,2492
chr3	186460110	rs5030087	G	C	670.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=57;ExcessHet=3.0103;FS=3.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=1.46;SOR=1.347;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,24:57:99:679,0,865
chr3	186460222	rs5030088	A	G	44.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.767e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.69;ReadPosRankSum=-8.020e-01;SOR=0.148;VQSLOD=22.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:12:53:53,0,304
chr3	186501502	rs266720	C	A	3379.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.61;DB;DP=86;ExcessHet=1.5490;FS=0.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=-3.360e-01;SOR=0.610;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2563,257,0
chr3	186501648	rs266719	T	C	1101.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.50;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=0.842;SOR=2.073;VQSLOD=4.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:552,39,0
chr3	186504148	rs266718	T	C	704.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.98;ReadPosRankSum=0.708;SOR=0.641;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:375,0,367
chr3	186505900	rs1354091	T	G	124.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,73
chr3	186505930	rs17299991	C	T	109.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=1.179;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr3	186507922	rs2066500	C	T	3190.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DB;DP=121;ExcessHet=3.9794;FS=1.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.922;SOR=0.818;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,53:121:99:1352,0,1731
chr3	186508312	rs266759	C	T	424.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.68;ReadPosRankSum=0.842;SOR=2.833;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:290,21,0
chr3	186508357	rs266758	T	C	238.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=-1.150e+00;SOR=2.833;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:139,12,0
chr3	186509517	rs187868	G	A	4104.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.845;DB;DP=87;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=-1.319e+00;SOR=0.649;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2912,261,0
chr3	186512257	.	C	A	89.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.16;ReadPosRankSum=-7.030e-01;SOR=0.368;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:98:98,0,185
chr3	186518806	rs3917109	C	A	878.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.810e-01;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-1.180e-01;SOR=0.892;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:338,0,535
chr3	186519136	rs1648703	A	C	114.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.56;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:21:0|1:186519136_A_C:123,0,21:186519136
chr3	186519141	rs1656941	A	C	119.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.92;SOR=2.833;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:186519136_A_C:135,9,0:186519136
chr3	186522293	rs113205972	TA	T	150.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=22;ExcessHet=6.9897;FS=4.763;MQ=59.95;MQRankSum=0.00;QD=2.04;ReadPosRankSum=0.156;SOR=0.250;VQSLOD=4.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:77:77,0,335
chr3	186571123	rs1501299	G	T	2221.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335e+00;DB;DP=71;ExcessHet=3.9794;FS=1.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.288;SOR=0.813;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,35:71:99:890,0,967
chr3	186572642	rs1501298	G	A	2704.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.99;SOR=6.214;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1023,81,0
chr3	186791795	rs9821439	A	G	538.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=6;ExcessHet=3.9794;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=2.19;SOR=2.712;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:264,18,0
chr3	186791817	rs2268526	A	C	86.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.610e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.703;SOR=1.270;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:95:95,0,154
chr3	186792241	rs4686847	C	T	182.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=3;ExcessHet=1.5490;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=1.65;SOR=2.833;VQSLOD=19.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr3	186793242	rs2239612	G	A	133.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=-1.718e+00;SOR=0.693;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:141,0,149
chr3	186793729	rs1042642	A	G	954.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.70;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=0.444;SOR=1.739;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:331,24,0
chr3	186915096	rs1477200	A	G	670.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=-7.030e-01;SOR=1.302;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:516,36,0
chr3	186917751	rs6764714	C	G	14132.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.999e+00;DB;DP=184;ExcessHet=3.0103;FS=3.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=0.499;SOR=0.803;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,183:184:99:5350,506,0
chr3	186941297	rs9880761	G	A	115.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.80;SOR=1.609;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
chr3	186947410	rs850318	C	T	2498.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.388e+00;DB;DP=27;ExcessHet=3.0103;FS=10.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.92;ReadPosRankSum=-8.380e-01;SOR=0.488;VQSLOD=19.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:819,81,0
chr3	186947801	rs850317	C	T	156.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=0.375;SOR=0.446;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:165,0,301
chr3	186947874	rs16861761	G	C	172.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=1.15;SOR=0.693;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:112,0,29
chr3	186953808	rs850312	C	T	4492.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e+00;DB;DP=367;ExcessHet=3.0103;FS=8.503;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.24;ReadPosRankSum=2.09;SOR=0.424;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:183,184:367:99:4501,0,5071
chr3	186954285	rs710452	A	G	13012.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;DB;DP=185;ExcessHet=3.0103;FS=2.109;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=0.776;SOR=0.889;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:5649,555,0
chr3	186959042	rs3815623	G	A	95.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:89:104,0,89
chr3	186961478	rs710460	A	G	1752.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.911e+00;DB;DP=12;ExcessHet=3.0103;FS=3.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=0.302;SOR=0.275;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:450,36,0
chr3	186965268	rs3774275	A	G	921.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DB;DP=30;ExcessHet=3.9794;FS=16.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.439;SOR=3.246;VQSLOD=11.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,10:30:99:324,0,589
chr3	186967942	rs2302818	G	A	608.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.860e-01;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.922;SOR=0.885;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:373,0,325
chr3	187003495	rs698105	A	G	1119.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.148e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=2.11;SOR=1.022;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:573,54,0
chr3	187086081	rs3029886	TCAGA	T	2507.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.44;ReadPosRankSum=0.610;SOR=0.890;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:594,0,689
chr3	187088612	rs33927333	C	T	1358.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.934;DB;DP=109;ExcessHet=3.0103;FS=0.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.800;SOR=0.589;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,55:109:99:1367,0,1274
chr3	187088656	rs1047584	C	T	8015.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;DB;DP=124;ExcessHet=3.9794;FS=0.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-3.130e-01;SOR=0.723;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,66:124:99:1705,0,1400
chr3	187088926	rs1533594	G	A	7457.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.587e+00;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.02;ReadPosRankSum=0.127;SOR=0.692;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1154,0,1038
chr3	187416089	rs1851682	A	C	137.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=-6.740e-01;SOR=0.148;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:36:36,0,36
chr3	187416253	rs1523468	C	T	1806.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=45;ExcessHet=3.9794;FS=2.419;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.88;ReadPosRankSum=0.891;SOR=1.112;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:785,0,597
chr3	187416634	rs1973791	C	A	3343.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.066e+00;DB;DP=118;ExcessHet=3.9794;FS=8.113;MQ=56.81;MQRankSum=-1.570e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.07;SOR=0.384;VQSLOD=-2.028e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,58:118:99:1703,0,1939
chr3	187416719	rs11707167	T	C	3904.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=130;ExcessHet=3.9794;FS=0.000;MQ=57.61;MQRankSum=0.457;QD=13.23;ReadPosRankSum=0.894;SOR=0.699;VQSLOD=-1.247e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,69:130:99:1845,0,1604
chr3	187419661	rs113681515	G	GCCTGCC	4226.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=26;ExcessHet=3.0103;FS=10.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.056;SOR=2.494;VQSLOD=4.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,8:26:99:322,0,1412
chr3	187419967	rs116716610	G	C	754.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DB;DP=47;ExcessHet=3.0103;FS=1.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=0.332;SOR=0.438;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:763,0,539
chr3	187420445	rs4389470	C	T	6974.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.87;SOR=2.632;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2003,189,0
chr3	187440506	rs1005099	C	A	923.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813e+00;DB;DP=40;ExcessHet=3.9794;FS=0.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.681;SOR=0.497;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:488,0,559
chr3	187442527	rs1474326	C	A	275.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.936;SOR=0.818;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:184,0,143
chr3	187443314	rs61732778	G	A	958.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.220;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=-3.200e-01;SOR=0.631;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,38:61:99:967,0,523
chr3	187445892	rs6794965	A	G	588	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=5.670;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr3	187446059	rs77754772	C	T	718.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=58;ExcessHet=3.0103;FS=3.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-1.121e+00;SOR=0.331;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,30:58:99:727,0,695
chr3	187446390	rs41268621	C	G	112.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=-5.240e-01;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:30:121,0,30
chr3	187447032	rs1056932	G	A	4977.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=153;ExcessHet=3.9794;FS=5.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=1.53;SOR=0.958;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,79:153:99:2334,0,1881
chr3	187447926	rs1491997	C	T	506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=1.73;SOR=0.668;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:248,0,190
chr3	187448009	rs1491996	T	G	1158.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=1.751;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr3	187449922	rs1969414	G	C	981.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.44;SOR=1.220;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:296,21,0
chr3	187450067	rs77299262	T	C	174.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.26;ReadPosRankSum=-6.040e-01;SOR=0.941;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,7:24:99:183,0,554
chr3	187450128	rs4417855	C	T	1568.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753e+00;DB;DP=38;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=-5.620e-01;SOR=0.810;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:342,0,621
chr3	187450354	rs76287110	T	A	152.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.113;DB;DP=16;ExcessHet=3.0103;FS=5.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.488;SOR=0.105;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:161,0,298
chr3	187451609	rs1880101	A	G	5273.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.39;SOR=1.513;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1505,150,0
chr3	187451701	rs1880100	T	C	666.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=12;ExcessHet=3.9794;FS=2.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.97;ReadPosRankSum=0.409;SOR=0.330;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:187451701_T_C:324,0,206:187451701
chr3	187451709	rs1880099	C	T	701.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.652e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=-7.280e-01;SOR=0.527;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,8:10:99:0|1:187451701_T_C:327,0,169:187451701
chr3	187896731	rs344954	A	G	203.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:77,0,66
chr3	187898092	rs16863078	T	G	3991.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=159;ExcessHet=3.9794;FS=8.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=1.84;SOR=1.121;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,84:159:99:2230,0,1771
chr3	188123819	rs3732911	T	G	1423.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.45;ReadPosRankSum=1.11;SOR=1.022;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:583,42,0
chr3	188202247	rs144823772	G	A	207.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=-4.050e-01;SOR=1.085;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:216,0,140
chr3	188202550	rs2067078	A	T	5432.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.182e+00;DB;DP=47;ExcessHet=3.0103;FS=1.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=0.621;SOR=0.927;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,26:47:99:0|1:188202550_A_T:707,0,592:188202550
chr3	188202582	rs1559814	G	T	4811.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.69;SOR=3.631;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:90:1|1:188202550_A_T:1264,90,0:188202550
chr3	188242669	rs200398269	TTCCTTCCTTCCGTCCG	T	3133.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.13;ReadPosRankSum=0.723;SOR=0.630;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:188242669_TTCCTTCCTTCCGTCCG_T:148,0,260:188242669
chr3	188242673	.	TTCCTTCCGTCCG	*,T	308.19	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=3.05;SOR=0.661;VQSLOD=0.226;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,4,4:8:99:333,171,260,162,0,148
chr3	188242697	rs369579197	T	G	147.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.41;SOR=0.693;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:156,0,156
chr3	188242701	rs138209867	T	G	3291.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.292e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.69;ReadPosRankSum=-1.282e+00;SOR=0.966;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:27:367,27,0
chr3	188242705	rs144299808	T	G	2781.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.480e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.98;ReadPosRankSum=0.179;SOR=0.916;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:188242669_TTCCTTCCTTCCGTCCG_T:147,0,260:188242669
chr3	188327461	rs1059380	C	T	4285.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=99;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=2.00;SOR=0.695;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3061,297,0
chr3	188426256	rs9877192	A	G	2559.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150e-01;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=0.282;SOR=0.732;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,25:43:99:718,0,537
chr3	188464248	rs3830584	G	GT	3628.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DB;DP=106;ExcessHet=3.9794;FS=0.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.592;SOR=0.643;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,50:106:99:1547,0,1770
chr3	188478197	rs3841956	G	GGTGT	1556.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.84;MQRankSum=0.00;QD=32.42;ReadPosRankSum=2.24;SOR=1.416;VQSLOD=5.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:21:78:78,0,374
chr3	188478235	rs9844854	T	C	2258.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.70;QD=29.96;SOR=8.086;VQSLOD=6.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:599,51,0
chr3	188590358	rs4687001	C	T	11256.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=1.456;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3693,365,0
chr3	188590446	rs1136644	A	G	12217.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.555;DB;DP=170;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=0.518;SOR=0.651;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5186,509,0
chr3	188590663	rs2278095	G	A	1504.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.20;ReadPosRankSum=-2.780e-01;SOR=3.467;VQSLOD=18.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:692,51,0
chr3	189349247	rs28673064	A	T	1410.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.32;DB;DP=61;ExcessHet=3.9794;FS=0.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-1.154e+00;SOR=0.591;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:742,0,780
chr3	189547652	rs1515491	A	G	1140.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=1.47;SOR=3.912;VQSLOD=15.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:62:191,0,62
chr3	189547697	rs73199745	A	G	322.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.04;DB;DP=23;ExcessHet=3.0103;FS=2.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=1.17;SOR=1.845;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:331,0,417
chr3	189586030	rs1399773	T	G	66.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=0.693;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	189586182	rs1399774	A	G	113.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.01;SOR=1.179;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr3	189586876	rs7624324	T	C	67.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=2.303;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr3	189587274	rs6790167	A	G	1160.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.240e-01;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=0.655;SOR=1.022;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:463,39,0
chr3	189590824	rs9840359	G	C	1264.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.50;ReadPosRankSum=-6.440e-01;SOR=1.157;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:723,66,0
chr3	189598126	rs35032687	G	T	320.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=3.056;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:337,27,0
chr3	189604149	rs1554131	T	G	5526.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=112;ExcessHet=3.9794;FS=0.822;MQ=59.97;MQRankSum=0.810;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=0.762;SOR=0.758;VQSLOD=2.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3270,336,0
chr3	189604160	rs1345186	T	C	5975.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.25;DB;DP=116;ExcessHet=3.9794;FS=1.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.974;SOR=0.767;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3569,348,0
chr3	189612336	rs34057105	C	T	1603.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.43;SOR=1.565;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1620,153,0
chr3	189625025	rs201745713	CT	C	211.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.89;ReadPosRankSum=-8.500e-02;SOR=0.354;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:71:71,0,95
chr3	189625218	rs1515488	G	A	3170.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.001e+00;DB;DP=80;ExcessHet=1.5490;FS=2.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=0.986;SOR=0.620;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2430,240,0
chr3	189688569	rs3732920	C	A	1307.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.930e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.68;ReadPosRankSum=-1.080e-01;SOR=0.693;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:604,54,0
chr3	189689904	rs710543	A	G	5014.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.88;SOR=1.810;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1481,144,0
chr3	189690816	rs71674435	G	GA	1113.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=59.86;QD=25.91;SOR=1.179;VQSLOD=3.43;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,22:22:66:588,66,0
chr3	189690861	rs710545	T	A	1108.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.79;POSITIVE_TRAIN_SITE;QD=31.69;SOR=3.477;VQSLOD=4.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:424,39,0
chr3	189691499	rs1815171	G	A	446.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=2.52;SOR=2.448;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	189692565	rs1985690	G	A	4660.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.160e+00;DB;DP=46;ExcessHet=3.0103;FS=3.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=1.06;SOR=0.326;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1677,138,0
chr3	189702117	rs10532307	GAAAA	G	1696.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=5.892;VQSLOD=7.14;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,15:15:45:675,45,0
chr3	189702200	rs710558	T	C	4168.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=3.321;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1515,120,0
chr3	189702395	rs11311050	TA	T	5560.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.773;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.80;ReadPosRankSum=-5.920e-01;SOR=1.082;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1552,165,0
chr3	189702583	rs710559	A	C	211.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.42;SOR=3.611;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr3	189705268	rs11354217	TA	T	467.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=39;ExcessHet=6.9897;FS=0.707;MQ=59.58;MQRankSum=0.00;QD=5.03;ReadPosRankSum=0.614;SOR=0.593;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,12:39:99:186,0,342
chr3	189705542	rs3114672	A	G	2916.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=30.52;SOR=5.255;VQSLOD=5.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,23:23:69:905,69,0
chr3	189712089	rs1719599	G	A	4811.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.53;SOR=1.907;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:189712089_G_A:1699,114,0:189712089
chr3	189712090	rs1719598	G	A	4811.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.50;SOR=1.938;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:189712089_G_A:1699,114,0:189712089
chr3	189712094	rs139834656	A	AAAAC	1948.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.445;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=1.99;SOR=1.537;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:56:826,56,0
chr3	189713205	rs9821880	T	C	3353.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.120e-01;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.22;ReadPosRankSum=-1.355e+00;SOR=0.346;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1717,168,0
chr3	189713345	rs10645374	G	GT,GTT	1329.36	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.06;SOR=3.026;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,10,2:12:13:281,48,13,217,0,210
chr3	189837993	rs710596	G	A	2162.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=55;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=-3.690e-01;SOR=0.689;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:668,0,700
chr3	189838018	rs35346557	G	T	1373.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.380e-01;DB;DP=71;ExcessHet=3.9794;FS=1.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=-1.170e+00;SOR=0.531;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,35:71:99:805,0,987
chr3	190025805	rs1043747	G	T	175.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=1.65;SOR=1.609;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	190025964	rs3172404	C	T	3000.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.530e-01;DB;DP=40;ExcessHet=3.9794;FS=0.950;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=0.447;SOR=0.580;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1406,120,0
chr3	190026383	rs12629166	C	T	741.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.290e-01;DB;DP=8;ExcessHet=3.9794;FS=7.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=1.35;SOR=3.014;VQSLOD=16.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:318,24,0
chr3	190030526	rs6776378	G	A	595.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.600e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=0.434;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr3	190030680	rs9869263	A	G	3037.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;DB;DP=55;ExcessHet=3.9794;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=2.40;SOR=0.820;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1631,165,0
chr3	190039601	rs893051	G	C	2408.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=23;ExcessHet=3.9794;FS=6.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=1.92;SOR=1.410;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:264,0,373
chr3	190147663	rs12631469	A	C	399.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-2.980e-01;SOR=0.784;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:225,0,172
chr3	190157898	rs6767754	G	A	1793.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.713;DB;DP=25;ExcessHet=3.9794;FS=5.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=0.100;SOR=1.508;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:922,75,0
chr3	190281873	rs3732921	T	C	545.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.29;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:136,0,63
chr3	190282197	rs6764468	G	A	3924.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.45;ReadPosRankSum=1.06;SOR=0.689;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,21:51:99:575,0,764
chr3	190322271	rs6444440	T	C	3666.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.15;SOR=1.927;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,41:41:99:1|1:190322271_T_C:1636,123,0:190322271
chr3	190322277	rs2072586	A	G	2732.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.511e+00;DB;DP=39;ExcessHet=1.5490;FS=1.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.53;ReadPosRankSum=-2.380e-01;SOR=1.014;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,26:39:99:0|1:190322271_T_C:727,0,354:190322271
chr3	190326609	rs28744409	T	C	229.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.39;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,1:5:66:0|1:190326609_T_C:66,0,317:190326609
chr3	190326613	rs28591336	A	T	229.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.99;ReadPosRankSum=-8.420e-01;SOR=1.085;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:66:0|1:190326609_T_C:66,0,317:190326609
chr3	190326617	rs11282063	C	CAATTCGTG	235.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=-8.420e-01;SOR=1.085;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,387
chr3	190332850	rs35943704	C	CT	83.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.97;ReadPosRankSum=0.967;SOR=1.329;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:19:47,0,19
chr3	190333162	rs35429399	TG	T	5306.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=75;ExcessHet=1.5490;FS=0.000;MQ=59.93;MQRankSum=-1.014e+00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=-3.450e-01;SOR=0.743;VQSLOD=1.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,36:75:99:1191,0,1331
chr3	190333322	rs34581855	A	G	504.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.56;ReadPosRankSum=-1.960e+00;SOR=2.584;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:104,0,111
chr3	190338039	rs11368884	C	CT	2180.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.236;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=0.548;SOR=1.666;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,20:23:16:464,16,0
chr3	190338265	rs41500851	A	G	959.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.491e+00;DB;DP=75;ExcessHet=3.0103;FS=2.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-2.121e+00;SOR=0.414;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,38:75:99:968,0,1054
chr3	190338412	rs1015704	G	A	565.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.29;ReadPosRankSum=1.47;SOR=1.402;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:150,0,102
chr3	190341241	rs4687160	C	A	1738.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=34;ExcessHet=1.5490;FS=7.507;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=-3.130e-01;SOR=1.765;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,11:34:99:286,0,531
chr3	190341292	rs4687161	C	T	757.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=13;ExcessHet=1.5490;FS=2.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=0.146;SOR=1.942;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,274
chr3	190341342	rs4687162	A	G	403.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.390;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=-7.610e-01;SOR=1.609;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:89:89,0,162
chr3	190345043	rs139454958	TTTTTG	T	1425.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.590e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.95;ReadPosRankSum=-1.150e-01;SOR=0.470;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:540,36,0
chr3	190345098	rs34908328	GT	G	2014.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.996;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=1.39;SOR=0.664;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,30:32:40:821,40,0
chr3	190347391	rs7611887	C	T	1720.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.40;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=-7.550e-01;SOR=0.648;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:755,60,0
chr3	190575882	rs9811768	C	G	2428.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.404e+00;DB;DP=68;ExcessHet=6.9897;FS=4.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.47;SOR=0.426;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,34:68:99:865,0,978
chr3	190576593	rs1393055	A	T	1495.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=27;ExcessHet=6.9897;FS=0.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.425;SOR=0.522;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:405,0,455
chr3	190576935	rs4687178	A	G	882.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=0.418;SOR=0.773;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:91:91,0,269
chr3	190577535	rs9855583	A	G	2211.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=57;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.70;ReadPosRankSum=4.000e-03;SOR=0.694;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:594,0,719
chr3	190577763	rs7640070	G	A	1029.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.386e+00;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.375;SOR=0.627;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:215,0,253
chr3	190578566	rs13075089	A	G	4221.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=59;ExcessHet=3.9794;FS=1.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-1.290e-01;SOR=0.819;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,31:59:99:843,0,636
chr3	190578743	rs4577513	T	C	1204.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621e+00;DB;DP=32;ExcessHet=6.9897;FS=9.015;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-5.570e-01;SOR=0.141;VQSLOD=4.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,19:32:99:518,0,337
chr3	190580150	rs10630111	A	AG	105.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=0.328;SOR=1.609;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:190580150_A_AG:114,0,306:190580150
chr3	190580151	rs371567527	A	AGAG	105.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=0.328;SOR=1.609;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:190580150_A_AG:114,0,306:190580150
chr3	190594021	rs9841756	A	G	70.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.57;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:78,0,33
chr3	190594044	rs9841874	A	G	113.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.34;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:65,0,29
chr3	190594076	rs13096714	G	A	279.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=8;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=0.319;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:54:192,0,54
chr3	190594309	rs9880320	G	A	2906.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=120;ExcessHet=6.9897;FS=0.821;MQ=53.86;MQRankSum=-1.030e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=-6.380e-01;SOR=0.629;VQSLOD=-2.048e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,50:120:99:1035,0,1663
chr3	190594334	rs9842242	A	G	3319.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=116;ExcessHet=6.9897;FS=3.521;MQ=53.77;MQRankSum=0.328;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=-5.370e-01;SOR=0.892;VQSLOD=-1.300e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,48:116:99:1157,0,1684
chr3	190594452	rs9842514	A	C	2157.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=52;ExcessHet=6.9897;FS=0.565;MQ=59.63;MQRankSum=-1.992e+00;QD=11.92;ReadPosRankSum=0.652;SOR=0.622;VQSLOD=-1.009e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,24:52:99:0|1:190594452_A_C:902,0,1585:190594452
chr3	190594454	rs9880346	C	T	893.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.350e-01;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.43;MQRankSum=-2.254e+00;QD=17.51;ReadPosRankSum=0.909;SOR=0.582;VQSLOD=-9.521e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,23:51:99:0|1:190594452_A_C:902,0,1585:190594452
chr3	190936482	rs9290979	A	C	1509.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.42;SOR=0.669;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:759,0,894
chr3	190967718	rs34754526	TA	T	251.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.95;ReadPosRankSum=1.71;SOR=1.445;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,103
chr3	190980432	rs6773375	C	A	501.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.53;SOR=5.283;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr3	190980797	rs7644510	A	G	5438.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.495e+00;DB;DP=54;ExcessHet=3.0103;FS=4.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=-1.183e+00;SOR=0.350;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1694,161,0
chr3	190985993	rs11710136	C	T	106.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=2.833;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr3	190986110	rs10804933	C	T	1752.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.590e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.22;ReadPosRankSum=2.03;SOR=0.992;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:669,57,0
chr3	190986388	rs6794154	C	T	1517.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=7.378;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:488,39,0
chr3	190991384	rs9857697	G	A	12228.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.638e+00;DB;DP=180;ExcessHet=3.0103;FS=0.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=-2.890e-01;SOR=0.631;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,180:180:99:5197,539,0
chr3	190991439	rs9877400	T	C	10038.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.02;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=0.345;SOR=0.691;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3783,366,0
chr3	190995847	rs3214008	T	C	2640.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.121;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.80;ReadPosRankSum=-1.010e+00;SOR=0.643;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:190995847_T_C:726,69,0:190995847
chr3	190999702	rs6788097	C	T	209.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.652;SOR=1.402;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	190999760	rs6444532	A	C	878.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.101e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=0.094;SOR=2.165;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:350,27,0
chr3	190999790	rs6444533	A	G	1552.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=16;ExcessHet=3.0103;FS=3.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=1.67;SOR=0.259;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:584,48,0
chr3	190999872	rs6444534	G	A	3691.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.38;DB;DP=34;ExcessHet=3.0103;FS=3.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=-2.395e+00;SOR=1.067;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1166,102,0
chr3	190999917	rs6788319	C	A	4613.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.741;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=0.312;SOR=0.730;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1626,147,0
chr3	190999990	rs6444535	C	T	4161.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.486e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.02;ReadPosRankSum=0.100;SOR=0.695;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1438,135,0
chr3	191047532	rs9847278	A	G	9989.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=-6.220e-01;SOR=0.718;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,61:114:99:1588,0,1213
chr3	191074873	rs188384	C	G	5773.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DB;DP=72;ExcessHet=3.0103;FS=1.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=1.63;SOR=0.533;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:878,0,980
chr3	191087551	rs697905	G	A	5215.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.780e-01;DB;DP=37;ExcessHet=3.0103;FS=1.077;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=0.302;SOR=0.962;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,13:37:99:374,0,739
chr3	191093434	rs293806	A	G	2197.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=22;ExcessHet=3.0103;FS=1.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=-1.908e+00;SOR=1.201;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:355,0,275
chr3	191093468	rs2307645	TTC	T	199.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.01;MQRankSum=-1.162e+00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-3.270e-01;SOR=0.693;VQSLOD=1.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:208,0,377
chr3	191097908	rs293812	C	T	1232.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=12;ExcessHet=3.9794;FS=4.959;MQ=59.73;MQRankSum=1.91;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-7.790e-01;SOR=0.101;VQSLOD=-6.018e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:197,0,201
chr3	191097928	rs34031057	G	GT	1214.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-02;DB;DP=15;ExcessHet=3.0103;FS=1.687;MQ=59.62;MQRankSum=0.00;QD=18.40;ReadPosRankSum=1.28;SOR=0.321;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:89:89,0,134
chr3	191097966	rs293813	T	C	2032.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.458e+00;DB;DP=21;ExcessHet=3.9794;FS=1.847;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=1.24;SOR=0.939;VQSLOD=6.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:266,0,278
chr3	191098121	rs293814	C	T	2070.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=23;ExcessHet=3.9794;FS=2.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=1.73;SOR=1.045;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:248,0,326
chr3	191098731	rs211043	G	A	2614.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DB;DP=38;ExcessHet=3.9794;FS=0.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=-7.840e-01;SOR=0.828;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:411,0,585
chr3	191100448	rs383529	G	T	980.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=0.687;SOR=1.038;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:83:227,0,83
chr3	191100561	rs364519	C	A	2666.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=-1.433e+00;SOR=0.666;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:516,0,649
chr3	191107192	rs436393	A	G	787.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.241;DB;DP=36;ExcessHet=3.9794;FS=1.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=0.027;SOR=0.883;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:466,0,468
chr3	191178925	rs539897	G	A	837.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.88;DB;DP=20;ExcessHet=3.9794;FS=2.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=2.12;SOR=1.588;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:346,0,260
chr3	191179193	rs293833	A	G	3730.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220e-01;DB;DP=131;ExcessHet=3.9794;FS=1.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=2.44;SOR=0.597;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,63:131:99:1617,0,1821
chr3	191179303	rs176823	C	T	1876.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.626;DB;DP=68;ExcessHet=3.9794;FS=0.679;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-6.800e-02;SOR=0.813;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,36:68:99:940,0,915
chr3	191861521	rs1460922	A	G	413.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.49;ReadPosRankSum=-9.670e-01;SOR=2.670;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr3	192445251	.	ATT	A	218.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DP=13;ExcessHet=6.9897;FS=1.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=-4.640e-01;SOR=0.385;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:13:99:116,0,148
chr3	192635241	rs67241930	C	T	369.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=1.07;SOR=1.609;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:43:43,0,315
chr3	192635348	rs9819230	C	G	3516.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=45;ExcessHet=3.0103;FS=8.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=-7.100e-02;SOR=1.705;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,16:45:99:479,0,786
chr3	192874285	rs1979354	G	A	10619.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.869e+00;DB;DP=159;ExcessHet=3.9794;FS=1.269;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=1.32;SOR=0.768;VQSLOD=6.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,94:159:99:2415,0,1787
chr3	192992750	rs73196871	G	A	621.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003e+00;DB;DP=38;ExcessHet=3.0103;FS=1.457;MQ=59.61;MQRankSum=-7.090e-01;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=-2.420e-01;SOR=0.446;VQSLOD=0.616;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,24:38:99:630,0,383
chr3	192996921	rs1878719	C	T	333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=59.30;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=2.15;SOR=0.551;VQSLOD=0.367;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:94:181,0,94
chr3	192997432	rs4481103	C	T	141.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:37:37,0,38
chr3	193007560	rs12152269	G	A	147.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-1.221e+00;SOR=0.307;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:58:104,0,58
chr3	193016895	rs1878716	T	C	3502.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029e+00;DB;DP=30;ExcessHet=3.0103;FS=1.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=-2.710e-01;SOR=0.434;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:419,0,396
chr3	193023255	rs10937578	C	T	2431.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858e+00;DB;DP=33;ExcessHet=3.9794;FS=0.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=1.14;SOR=0.586;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,21:33:99:616,0,343
chr3	193024928	rs10804952	C	T	288.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=1.38;SOR=1.179;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:70,0,70
chr3	193029429	rs34366886	G	A	333.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.264e+00;DB;DP=2;ExcessHet=3.0103;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.82;ReadPosRankSum=-5.890e-01;SOR=2.833;VQSLOD=19.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr3	193031926	rs2280268	C	T	3310.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.410e-01;DB;DP=54;ExcessHet=3.9794;FS=3.414;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=1.07;SOR=0.981;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,22:54:99:489,0,850
chr3	193036794	rs6788770	G	C	5060.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-01;DB;DP=50;ExcessHet=3.0103;FS=1.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.42;ReadPosRankSum=0.301;SOR=0.930;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:624,0,588
chr3	193042539	rs7647391	T	C	1365.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.47;SOR=7.054;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:325,24,0
chr3	193042776	rs11926955	T	C	8195.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=119;ExcessHet=3.0103;FS=1.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=-5.500e-01;SOR=0.578;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,48:119:99:1140,0,1850
chr3	193042964	rs11715170	G	A	2319.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=0.662;SOR=0.617;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:261,0,372
chr3	193044923	rs1387700	T	C	1871.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=0.323;SOR=1.647;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,10:12:49:359,0,49
chr3	193051401	rs11718268	C	T	142.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-4.640e-01;SOR=0.941;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:151,0,104
chr3	193062906	rs6444706	G	A	6901.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.34;SOR=2.387;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1871,162,0
chr3	193063038	rs6774889	C	G	1033.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.96;SOR=6.439;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr3	193068737	rs1038718	A	G	4431.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e+00;DB;DP=99;ExcessHet=3.9794;FS=1.020;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=1.12;SOR=0.795;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,55:99:99:1334,0,988
chr3	193068800	rs1038719	G	A	5488.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.570e+00;DB;DP=104;ExcessHet=3.9794;FS=1.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-5.550e-01;SOR=0.801;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,60:104:99:1510,0,1148
chr3	193069125	rs55658952	G	C	469.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=0.135;SOR=0.507;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:199,0,100
chr3	193071727	rs7632644	G	A	607.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=11;ExcessHet=3.9794;FS=3.254;MQ=60.00;MQRankSum=0.00;QD=19.00;ReadPosRankSum=0.00;SOR=1.493;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:53:53,0,192
chr3	193071888	rs11300573	CA	C	2112.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.490e-01;DB;DP=48;ExcessHet=3.9794;FS=1.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-3.400e-02;SOR=0.929;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,21:48:99:461,0,630
chr3	193072258	rs7633194	G	T	267.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,101
chr3	193080344	rs12636830	C	T	3127.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DB;DP=114;ExcessHet=3.9794;FS=4.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=1.90;SOR=1.014;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,58:114:99:1483,0,1372
chr3	193080414	rs6797429	C	G	3637.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.630e-01;DB;DP=75;ExcessHet=3.9794;FS=2.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.55;ReadPosRankSum=1.56;SOR=0.529;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,35:75:99:918,0,1126
chr3	193081122	rs12637558	G	T	1673.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.880e-01;DB;DP=70;ExcessHet=3.9794;FS=0.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.907;SOR=0.813;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,41:70:99:1056,0,776
chr3	193081206	rs2367605	G	A	1687.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=0.892;SOR=0.827;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:423,0,403
chr3	193081748	rs4234630	G	A	1206.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.08;SOR=6.736;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:470,33,0
chr3	193081750	rs923497	A	G	781.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.96;ReadPosRankSum=0.816;SOR=1.460;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:189,0,206
chr3	193081830	rs923496	A	G	4711.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.17;SOR=3.912;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1572,126,0
chr3	193081864	rs923495	G	A	1526.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e-01;DB;DP=63;ExcessHet=3.9794;FS=1.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-2.210e-01;SOR=0.514;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,30:63:99:849,0,1318
chr3	193081866	rs4386441	T	A	4156.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.918e+00;DB;DP=64;ExcessHet=3.9794;FS=0.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=0.552;SOR=0.848;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,34:64:99:880,0,1158
chr3	193082138	rs923494	T	C	447.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.53;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-1.143e+00;SOR=0.776;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:456,0,330
chr3	193090101	rs57458521	A	AGG,AAAAGG	3431.22	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.40;POSITIVE_TRAIN_SITE;QD=29.14;SOR=3.086;VQSLOD=5.55;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,7,3:16:99:1134,196,103,328,0,271
chr3	193090255	rs2171848	C	T	5531.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=26.68;SOR=2.119;VQSLOD=3.88;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:78:1|1:193090255_C_T:1139,78,0:193090255
chr3	193090260	rs6444712	T	C	5502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=27.36;SOR=2.191;VQSLOD=4.85;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:81:1|1:193090255_C_T:1148,81,0:193090255
chr3	193090373	rs11300968	AC	A	1044.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=6.666;VQSLOD=6.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr3	193090398	rs1565354	A	C	652.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=5.549;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr3	193096529	rs4687419	C	T	2345.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=27;ExcessHet=3.9794;FS=6.438;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.049;SOR=0.177;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:398,0,375
chr3	193120359	rs142743757	GA	G	404.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.640e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-8.090e-01;SOR=0.382;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,12:24:99:413,0,413
chr3	193120726	rs62285692	C	T	592.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.408e+00;DB;DP=43;ExcessHet=3.0103;FS=2.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.616;SOR=0.473;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,25:43:99:601,0,511
chr3	193128900	rs61401139	G	A	1549.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.112e+00;DB;DP=73;ExcessHet=3.9794;FS=1.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=-2.130e-01;SOR=0.546;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,32:73:99:703,0,1116
chr3	193129807	rs6763501	G	A	2253.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=45;ExcessHet=6.9897;FS=1.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-5.940e-01;SOR=0.858;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:616,0,467
chr3	193130295	rs200499336	AACAC	A	730.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.26;MQRankSum=0.00;QD=30.43;ReadPosRankSum=0.812;SOR=0.957;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr3	193130384	rs6764121	G	A	277.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	193153562	rs1996735	T	C	2874.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.530e-01;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=0.934;SOR=0.749;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1557,147,0
chr3	193159449	rs12497916	G	A	1513.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.801e+00;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.353;SOR=0.881;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:744,0,616
chr3	193160474	rs9849997	A	T	470.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=0.189;SOR=2.448;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:293,21,0
chr3	193171979	rs35424709	T	A	1854.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.828;DB;DP=158;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-1.109e+00;SOR=0.685;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,76:158:99:1863,0,1893
chr3	193174782	rs9879227	T	C	738.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=64;ExcessHet=3.0103;FS=2.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.35;SOR=0.442;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,27:64:99:747,0,957
chr3	193180400	rs56312820	A	C	363.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.265;SOR=0.733;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:158,0,205
chr3	193180732	rs9825186	A	G	317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.078;SOR=0.540;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:73,0,65
chr3	193182715	rs12696666	T	G	676.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.433;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=2.91;SOR=0.557;VQSLOD=22.34;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:25,28:53:99:685,0,581
chr3	193183039	rs7617230	T	C	682.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=0.00;SOR=1.352;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:120,0,138
chr3	193183817	rs3796181	A	G	2067.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.372e+00;DB;DP=61;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.00;SOR=0.674;VQSLOD=6.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,31:61:99:713,0,747
chr3	193201506	rs9842952	G	T	231.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-4.310e-01;SOR=0.346;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,75
chr3	193201582	rs9842836	C	A	1060.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-4.650e-01;SOR=0.510;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:171,0,301
chr3	193272417	rs9883845	A	G	163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=15;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-2.032e+00;SOR=0.086;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:172,0,306
chr3	193272442	rs10530570	CGTGTGTGTGTGT	C,CGTGTGT	3273.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.58;SOR=2.478;VQSLOD=5.96;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,10,9:26:99:805,426,452,382,0,336
chr3	193332420	rs145894722	C	CTGTG	634.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=1.24;SOR=1.358;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:99:282,0,218
chr3	193334846	rs7646539	A	G	166.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.732;SOR=0.307;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,113
chr3	193334991	rs7624750	G	A	1759.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=69;ExcessHet=3.9794;FS=1.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=-1.580e-01;SOR=0.879;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,40:69:99:950,0,543
chr3	193335252	rs10937593	G	T	105.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=1.04;SOR=0.223;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:36:114,0,36
chr3	193336639	rs3772393	T	C	1285.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DB;DP=50;ExcessHet=3.9794;FS=0.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.983;SOR=0.590;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:758,0,530
chr3	193343761	rs6791301	C	G	1322.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=55;ExcessHet=3.9794;FS=2.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=0.919;SOR=0.982;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,23:55:99:499,0,877
chr3	193353072	rs3736198	G	A	66.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:28:74,0,28
chr3	193355074	rs166850	T	C	7000.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=0.718;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1725,182,0
chr3	193355102	rs10451941	T	C	1711.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=61;ExcessHet=3.9794;FS=0.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=0.906;SOR=0.803;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:786,0,591
chr3	193361617	rs1016226	C	T	323.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=11;ExcessHet=3.9794;FS=6.008;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.00;SOR=2.258;VQSLOD=3.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,7:11:86:218,0,86
chr3	193363695	rs34222475	G	A	134.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=0.204;SOR=0.412;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:143,0,220
chr3	193365974	rs9831900	T	G	1634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.660e-01;DB;DP=47;ExcessHet=3.9794;FS=1.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=2.03;SOR=0.940;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,27:47:99:754,0,532
chr3	193374964	rs9851685	T	C	1790.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=84;ExcessHet=3.9794;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.207;SOR=0.767;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,36:84:99:966,0,1130
chr3	193377037	rs28457829	G	A	126.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.85;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:68,0,66
chr3	193380452	rs3214982	CG	C	189.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.135;SOR=0.836;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:55:55,0,55
chr3	193383943	rs10937594	T	C	345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.765e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-9.800e-01;SOR=0.446;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:241,0,129
chr3	193383973	rs10804957	A	G	633.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.53;DB;DP=17;ExcessHet=3.9794;FS=5.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=1.81;SOR=2.326;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:259,0,294
chr3	193384203	rs10937595	T	A	2136.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DB;DP=78;ExcessHet=3.9794;FS=1.947;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.812;SOR=0.858;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,42:78:99:1026,0,826
chr3	193385275	rs13070791	C	T	415.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.05;ReadPosRankSum=1.47;SOR=1.609;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:193385275_C_T:69,0,415:193385275
chr3	193385276	rs13070610	A	G	415.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.05;ReadPosRankSum=1.47;SOR=1.609;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:193385275_C_T:69,0,415:193385275
chr3	193386239	rs12494482	C	T	5239.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=173;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=0.606;SOR=0.668;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,77:173:99:1894,0,2604
chr3	193386538	rs414237	C	T	698.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.860e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=0.100;SOR=1.453;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:181,0,153
chr3	193854148	rs76508827	T	TA,TAA	554.64	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.201e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.69;MQRankSum=0.00;QD=8.28;ReadPosRankSum=-2.850e-01;SOR=0.657;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,8,8:20:61:270,61,114,64,0,161
chr3	193854657	rs2236747	A	C	2333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=90;ExcessHet=3.9794;FS=4.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=1.07;SOR=0.464;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,50:90:99:1360,0,1012
chr3	193854961	rs2368048	T	C	822.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.593e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=0.282;SOR=0.892;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:375,30,0
chr3	194061906	rs4974538	T	C	15395.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.53;SOR=0.908;VQSLOD=18.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,114:114:99:1|1:194061906_T_C:5203,352,0:194061906
chr3	194061907	rs4974539	G	A	8971.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=116;ExcessHet=3.9794;FS=2.394;MQ=60.00;MQRankSum=0.00;QD=23.86;ReadPosRankSum=0.266;SOR=0.567;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,116:116:99:1|1:194061906_T_C:5203,352,0:194061906
chr3	194062565	rs3732476	C	T	13438.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=0.825;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:3893,359,0
chr3	194063153	rs3732474	G	A	7715.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.587;DB;DP=132;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=0.329;SOR=0.680;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4177,395,0
chr3	194063300	rs62288099	T	C	15489.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.82;ReadPosRankSum=0.825;SOR=0.887;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,150:152:99:4674,406,0
chr3	194063798	rs7627548	T	A	110.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.55;SOR=3.258;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:124,12,0
chr3	194118874	rs1223989	T	C	29502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.64;SOR=1.188;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,288:288:99:9055,863,0
chr3	194124624	rs14414	C	T	118.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=57.15;POSITIVE_TRAIN_SITE;QD=29.64;SOR=3.258;VQSLOD=3.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:135,12,0
chr3	194124646	rs368554131	T	TGG	111.15	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.115;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=-2.150e-01;SOR=0.260;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr3	194127049	rs13324377	C	T	32.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:40,0,34
chr3	194133121	rs9855721	G	C	105.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=0.189;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:114,0,107
chr3	194147712	.	C	A	210.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.28;ReadPosRankSum=1.61;SOR=1.863;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:57:219,0,57
chr3	194149700	rs13064289	G	A	153.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=14;ExcessHet=3.0103;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.844;SOR=1.802;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:162,0,255
chr3	194168500	rs9861816	G	C	659.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=1.931;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:676,66,0
chr3	194175382	rs11711805	C	T	119.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.98;SOR=2.833;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr3	194176712	rs4974520	C	A	356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.204e+00;DB;DP=30;ExcessHet=3.0103;FS=1.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.395;SOR=0.774;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:365,0,359
chr3	194180647	rs192437984	A	G	1232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.090e-01;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-1.200e-01;SOR=0.670;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,53:115:99:1241,0,1533
chr3	194180711	rs115855066	G	A	804.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DB;DP=78;ExcessHet=3.0103;FS=4.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-8.990e-01;SOR=1.329;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,32:78:99:813,0,1188
chr3	194180743	rs4974521	G	T	1793.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=1.773;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1810,177,0
chr3	194181218	rs9854122	T	C	116.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.250e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.511;SOR=0.412;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:125,0,207
chr3	194181773	rs182619278	T	C	132.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=-4.310e-01;SOR=1.329;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:34:140,0,34
chr3	194182791	rs56695107	A	C	597.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=0.950;SOR=0.713;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,20:31:99:606,0,289
chr3	194182837	rs76459606	C	T	1006.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.410e-01;DB;DP=61;ExcessHet=3.0103;FS=2.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=-8.110e-01;SOR=0.404;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,39:61:99:1015,0,513
chr3	194219220	rs10662330	T	TTTTTG	153.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=-1.111e+00;SOR=3.258;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:99:162,0,112
chr3	194219566	rs2185478	G	A	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.118;DB;DP=25;ExcessHet=3.0103;FS=1.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=0.850;SOR=0.374;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:237,0,510
chr3	194219913	rs2153519	A	G	278.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=1.863;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:194219897_C_A:295,24,0:194219897
chr3	194309528	rs789837	G	A	3118.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DB;DP=41;ExcessHet=3.9794;FS=5.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=2.02;SOR=1.126;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:440,0,654
chr3	194313632	rs7373172	G	A	973.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=35;ExcessHet=3.9794;FS=2.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=1.06;SOR=1.022;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:510,0,300
chr3	194313832	rs1773184	T	C	1659.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=34.58;SOR=3.080;VQSLOD=5.23;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:33:392,33,0
chr3	194324939	rs6768028	A	G	1654.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.610e-01;DB;DP=51;ExcessHet=3.9794;FS=5.095;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=0.603;SOR=1.436;VQSLOD=6.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,30:51:99:821,0,538
chr3	194324982	rs745171	C	A	2614.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020e-01;DB;DP=77;ExcessHet=3.9794;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=1.77;SOR=0.776;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,41:77:99:1056,0,898
chr3	194325010	rs745168	G	A	3098.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-02;DB;DP=97;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.343;SOR=0.709;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,50:97:99:1124,0,1153
chr3	194325325	rs708632	C	T	7596.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=2.487;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2368,209,0
chr3	194325383	rs745170	C	T	1071.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750e+00;DB;DP=23;ExcessHet=3.9794;FS=9.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=-1.016e+00;SOR=0.048;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,16:23:99:473,0,245
chr3	194325496	rs789850	T	C	685.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.99;SOR=5.670;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr3	194337708	rs10933663	T	G	611.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=18;ExcessHet=3.9794;FS=1.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=1.24;SOR=0.914;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:299,0,268
chr3	194337901	rs922282	T	C	2152.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DB;DP=37;ExcessHet=3.0103;FS=2.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=0.230;SOR=1.085;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:549,0,417
chr3	194338398	rs373287099	G	A	801.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=82;ExcessHet=3.0103;FS=4.207;MQ=60.00;MQRankSum=0.00;QD=9.77;ReadPosRankSum=-1.074e+00;SOR=1.179;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,38:82:99:810,0,1037
chr3	194338423	rs12695036	C	T	1861.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=56;ExcessHet=3.9794;FS=3.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=1.54;SOR=0.445;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,33:56:99:781,0,575
chr3	194338538	rs12632700	A	T	498.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=0.798;SOR=1.609;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,10:11:46:0|1:194338538_A_T:412,0,46:194338538
chr3	194338562	rs10933664	A	C	388.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=12;ExcessHet=3.9794;FS=3.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.34;ReadPosRankSum=1.46;SOR=2.387;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,9:12:93:0|1:194338538_A_T:369,0,93:194338538
chr3	194346544	rs1773191	T	A	3824.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.505e+00;DB;DP=38;ExcessHet=3.0103;FS=0.984;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=0.395;SOR=0.567;VQSLOD=6.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,18:38:99:0|1:194346544_T_A:704,0,1017:194346544
chr3	194346553	rs1773190	T	C	3960.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.760e-01;DB;DP=43;ExcessHet=3.0103;FS=2.014;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=-1.460e-01;SOR=0.992;VQSLOD=6.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,21:43:99:0|1:194346544_T_A:745,0,1007:194346544
chr3	194349027	rs1318216	A	G	2230.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=-8.320e-01;SOR=1.270;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:235,0,448
chr3	194349178	rs1563970	C	T	5443.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.980e-01;DB;DP=111;ExcessHet=1.5490;FS=1.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.40;ReadPosRankSum=-2.540e-01;SOR=0.878;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,57:111:99:1314,0,1289
chr3	194353772	rs11273892	C	CCCGCCCGACAG	4261.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.269;DB;DP=43;ExcessHet=3.0103;FS=3.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=0.597;SOR=1.198;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,20:43:99:854,0,2681
chr3	194354032	rs6437392	G	C	1092.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.74;ReadPosRankSum=1.10;SOR=3.407;VQSLOD=16.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:152,0,147
chr3	194362721	rs1060827	G	A	337.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.0103;FS=4.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=0.524;SOR=3.056;VQSLOD=19.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr3	194373832	rs1675953	T	C	11101.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=-1.749e+00;SOR=0.727;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,44:82:99:0|1:194373832_T_C:1733,0,2089:194373832
chr3	194373833	rs1705991	G	A	11101.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.386;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.91;ReadPosRankSum=-1.740e+00;SOR=0.714;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,44:82:99:0|1:194373832_T_C:1733,0,2089:194373832
chr3	194374016	rs9829168	C	G	937.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=35.41;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:72,0,65
chr3	194379490	rs1675949	G	T	401.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.56;SOR=4.804;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr3	194379515	rs9817204	G	A	215.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:77,0,35
chr3	194379567	rs1675948	A	G	1556.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.99;ReadPosRankSum=-3.660e-01;SOR=2.004;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:61:181,0,61
chr3	194379596	rs1705971	C	A	1809.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=1.61;SOR=1.237;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:98:98,0,151
chr3	194379646	rs11438897	T	TC	3121.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.02;ReadPosRankSum=-1.450e+00;SOR=0.573;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,14:23:99:381,0,241
chr3	194379905	rs11357453	TA	T	1999.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DB;DP=14;ExcessHet=3.0103;FS=4.072;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=0.354;SOR=2.712;VQSLOD=6.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,10:14:82:269,0,82
chr3	194379959	rs1773194	T	C	1285.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.82;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.68;ReadPosRankSum=-1.282e+00;SOR=4.112;VQSLOD=-1.480e-02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:163,0,26
chr3	194381530	rs1705969	A	G	2543.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010e-01;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=-2.690e-01;SOR=0.615;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:260,0,642
chr3	194381680	rs1675947	G	A	1178.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840e-01;DB;DP=17;ExcessHet=3.0103;FS=5.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=1.51;SOR=1.746;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,3:17:40:40,0,398
chr3	194381716	rs1705968	G	C	938.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.843;DB;DP=16;ExcessHet=3.0103;FS=4.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=0.121;SOR=1.839;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:91:91,0,348
chr3	194381742	rs1705967	C	T	736.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.260e-01;DB;DP=16;ExcessHet=3.0103;FS=2.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-3.650e-01;SOR=2.133;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:88:88,0,401
chr3	194386136	rs1705966	C	T	2146.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DB;DP=23;ExcessHet=3.0103;FS=2.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=-3.160e-01;SOR=0.248;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,17:23:99:527,0,169
chr3	194386881	rs1675944	A	G	4464.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=0.699;SOR=0.613;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,30:51:99:815,0,469
chr3	194390617	rs1773230	G	C	1853.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.09;ReadPosRankSum=-5.110e-01;SOR=0.793;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:211,0,235
chr3	194390713	rs1675926	C	A	5220.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e-01;DB;DP=79;ExcessHet=3.0103;FS=3.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=-1.720e-01;SOR=1.014;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,40:79:99:999,0,954
chr3	194390869	rs36028600	G	GA	2170.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=30;ExcessHet=3.0103;FS=8.722;MQ=59.79;MQRankSum=-1.002e+00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=-1.352e+00;SOR=2.247;VQSLOD=0.140;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,14:30:99:345,0,410
chr3	194392683	rs1773231	A	C	7539.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.540e+00;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=-2.100e-01;SOR=0.662;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,48:88:99:1371,0,1194
chr3	194393034	rs898818	C	A	1681.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.93;ReadPosRankSum=-1.242e+00;SOR=5.330;VQSLOD=13.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:66:218,0,66
chr3	194407405	rs3752798	C	A	1228.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722e+00;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-1.550e-01;SOR=0.580;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:605,0,668
chr3	194408704	rs4677673	A	G	9477.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DB;DP=179;ExcessHet=3.9794;FS=2.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=1.78;SOR=0.881;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,84:179:99:1927,0,2266
chr3	194855555	rs71881835	GGTGT	G	405.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.81;ReadPosRankSum=0.319;SOR=3.611;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:14:100,0,14
chr3	194991220	rs7640099	A	G	6134.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.61;SOR=1.946;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:194991220_A_G:1738,117,0:194991220
chr3	194991221	rs7640100	A	C	6134.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.14;SOR=1.981;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:194991220_A_G:1738,117,0:194991220
chr3	194999996	rs7610022	T	A	3212.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=-1.077e+00;SOR=0.732;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:977,102,0
chr3	195028183	rs13059843	G	A	556.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=1.35;SOR=0.250;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:177,15,0
chr3	195029738	rs10636354	G	GAAAGT	1424.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=9;ExcessHet=3.0103;FS=7.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.45;ReadPosRankSum=-7.920e-01;SOR=3.056;VQSLOD=4.82;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:27:400,27,0
chr3	195076877	rs6437374	C	G	12016.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=170;ExcessHet=3.0103;FS=0.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.38;ReadPosRankSum=1.69;SOR=0.588;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:4974,509,0
chr3	195270078	rs823518	C	G	1382.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.61;SOR=7.054;VQSLOD=24.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:515,36,0
chr3	195295661	rs7659	C	T	377.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.345e+00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=0.00;SOR=1.911;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr3	195295708	rs142189206	G	GGGGT	691.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.85;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:30:149,0,30
chr3	195300676	rs1568566	A	G	1619.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.887e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.331;SOR=0.569;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:748,72,0
chr3	195306055	rs4677691	A	G	4829.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=30;ExcessHet=3.0103;FS=4.817;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.99;ReadPosRankSum=-6.200e-02;SOR=1.580;VQSLOD=5.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:491,0,476
chr3	195306498	rs56151108	C	A	174.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-2.410e-01;SOR=1.402;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:183,0,105
chr3	195345828	rs148520845	A	G	38961.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110e-01;DB;DP=522;ExcessHet=6.9897;FS=0.000;MQ=41.37;MQRankSum=-6.552e+00;QD=21.93;ReadPosRankSum=0.376;SOR=0.747;VQSLOD=-4.829e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:184,338:522:99:0|1:195345828_A_G:13659,0,7677:195345828
chr3	195345829	rs147830733	G	A	38961.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e-01;DB;DP=523;ExcessHet=6.9897;FS=0.526;MQ=41.45;MQRankSum=-6.576e+00;QD=21.89;ReadPosRankSum=0.404;SOR=0.748;VQSLOD=-4.887e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:184,339:523:99:0|1:195345828_A_G:13659,0,7677:195345828
chr3	195345953	rs145174488	C	T	24626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=353;ExcessHet=6.9897;FS=1.255;MQ=45.48;MQRankSum=2.66;QD=17.77;ReadPosRankSum=2.57;SOR=0.571;VQSLOD=-4.716e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,320:353:99:8086,0,187
chr3	195346477	rs7631117	C	T	5142.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-01;DB;DP=366;ExcessHet=3.9794;FS=0.562;MQ=53.84;MQRankSum=0.247;NEGATIVE_TRAIN_SITE;QD=6.59;ReadPosRankSum=1.02;SOR=0.757;VQSLOD=-3.253e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:267,99:366:99:1673,0,6529
chr3	195346623	rs78469087	A	G	6262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=835;ExcessHet=3.9794;FS=0.645;MQ=58.75;MQRankSum=4.45;NEGATIVE_TRAIN_SITE;QD=4.36;ReadPosRankSum=0.351;SOR=0.598;VQSLOD=-1.926e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:673,162:835:99:2688,0,18069
chr3	195346665	rs73212302	G	A	8689.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.612e+00;DB;DP=1033;ExcessHet=3.9794;FS=0.000;MQ=59.49;MQRankSum=2.97;NEGATIVE_TRAIN_SITE;QD=4.78;ReadPosRankSum=0.421;SOR=0.778;VQSLOD=-1.197e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:858,175:1033:99:0|1:195346665_G_A:4555,0,40532:195346665
chr3	195346677	rs73214503	G	A	8844.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=1052;ExcessHet=3.9794;FS=0.649;MQ=59.61;MQRankSum=2.32;NEGATIVE_TRAIN_SITE;QD=4.77;ReadPosRankSum=0.466;SOR=0.779;VQSLOD=-1.169e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:882,170:1052:99:0|1:195346665_G_A:4369,0,41054:195346665
chr3	195346861	rs116014205	T	C	13591.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490e-01;DB;DP=458;ExcessHet=1.5490;FS=3.385;MQ=51.44;MQRankSum=-1.337e+00;NEGATIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=1.46;SOR=0.960;VQSLOD=-2.391e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:246,212:458:99:5606,0,6573
chr3	195347059	rs2410778	C	T	5060.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.171e+00;DB;DP=508;ExcessHet=3.9794;FS=1.345;MQ=59.82;MQRankSum=1.60;QD=4.63;ReadPosRankSum=-3.900e-01;SOR=0.827;VQSLOD=-3.795e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:368,140:508:99:2904,0,10205
chr3	195347127	rs3988246	G	A	23613.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.17;DB;DP=256;ExcessHet=3.0103;FS=0.000;MQ=58.88;MQRankSum=5.37;QD=28.52;ReadPosRankSum=0.859;SOR=0.636;VQSLOD=-2.060e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,256:256:99:8439,768,0
chr3	195376921	.	A	G	733.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DP=40;ExcessHet=6.9897;FS=2.283;MQ=50.50;MQRankSum=-3.506e+00;NEGATIVE_TRAIN_SITE;QD=5.87;ReadPosRankSum=2.02;SOR=0.382;VQSLOD=-3.892e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,4:40:12:12,0,1114
chr3	195377008	rs371121701	C	G	533.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=41;ExcessHet=3.9794;FS=5.139;MQ=47.58;MQRankSum=2.14;QD=8.08;ReadPosRankSum=-2.360e-01;SOR=0.767;VQSLOD=-2.859e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,9:41:99:176,0,872
chr3	195377629	rs138964810	C	T	4866.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.790e-01;DB;DP=153;ExcessHet=1.5490;FS=1.060;MQ=54.83;MQRankSum=-6.462e+00;QD=22.53;ReadPosRankSum=0.026;SOR=0.609;VQSLOD=-4.286e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:93,60:153:99:0|1:195377629_C_T:2058,0,4584:195377629
chr3	195377651	rs139047772	T	C	4900.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=154;ExcessHet=1.5490;FS=0.493;MQ=55.75;MQRankSum=-6.732e+00;QD=21.98;ReadPosRankSum=0.909;SOR=0.748;VQSLOD=-4.720e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:98,56:154:99:0|1:195377629_C_T:1934,0,4730:195377629
chr3	195377875	rs201095238	C	CTG	3512.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=38.46;QD=28.05;SOR=6.543;VQSLOD=5.13;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1216,84,0
chr3	195390637	rs200260138	A	C	78.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=21;ExcessHet=3.9794;FS=1.670;MQ=52.46;MQRankSum=-1.951e+00;NEGATIVE_TRAIN_SITE;QD=1.74;ReadPosRankSum=-1.308e+00;SOR=1.302;VQSLOD=-3.327e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,3:21:28:0|1:195390637_A_C:28,0,478:195390637
chr3	195391062	rs2688562	C	G	1812.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=135;ExcessHet=3.0103;FS=0.636;MQ=57.09;MQRankSum=-3.764e+00;NEGATIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.38;SOR=0.755;VQSLOD=-2.641e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,71:135:99:1821,0,1345
chr3	195395200	rs76038654	C	G	540.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.35;DB;DP=29;ExcessHet=3.9794;FS=9.254;MQ=57.38;MQRankSum=1.92;NEGATIVE_TRAIN_SITE;QD=5.10;ReadPosRankSum=0.970;SOR=2.704;VQSLOD=-2.349e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,9:29:99:0|1:195395200_C_G:336,0,1130:195395200
chr3	195395203	rs79813842	A	G	589.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.416e+00;DB;DP=32;ExcessHet=3.9794;FS=1.359;MQ=57.50;MQRankSum=2.36;NEGATIVE_TRAIN_SITE;QD=5.26;ReadPosRankSum=0.601;SOR=0.947;VQSLOD=-2.568e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,11:32:99:0|1:195395200_C_G:358,0,1127:195395200
chr3	195395272	rs62287988	C	T	4021.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.583e+00;DB;DP=98;ExcessHet=6.9897;FS=10.717;MQ=54.35;MQRankSum=-7.210e-01;NEGATIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=1.85;SOR=0.352;VQSLOD=-1.948e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,28:98:99:569,0,2422
chr3	195395289	rs79370883	A	T	1750.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063e+00;DB;DP=119;ExcessHet=3.9794;FS=5.040;MQ=54.92;MQRankSum=2.71;NEGATIVE_TRAIN_SITE;QD=5.66;ReadPosRankSum=0.783;SOR=1.115;VQSLOD=-1.843e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:87,32:119:99:0|1:195395289_A_T:1050,0,3542:195395289
chr3	195395314	rs79206144	G	A	2708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.63;DB;DP=163;ExcessHet=3.9794;FS=2.650;MQ=55.40;MQRankSum=0.417;NEGATIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=0.590;SOR=0.993;VQSLOD=-2.768e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:117,46:163:99:0|1:195395289_A_T:1634,0,4891:195395289
chr3	195395328	rs62287989	T	C	9454.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.700;DB;DP=191;ExcessHet=6.9897;FS=2.765;MQ=55.13;MQRankSum=-5.352e+00;QD=14.48;ReadPosRankSum=-4.180e-01;SOR=0.485;VQSLOD=-3.688e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:103,88:191:99:3056,0,2630
chr3	195395334	rs75539242	A	T	3554.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=208;ExcessHet=3.9794;FS=0.698;MQ=55.42;MQRankSum=-6.610e-01;NEGATIVE_TRAIN_SITE;QD=7.17;ReadPosRankSum=-5.930e-01;SOR=0.757;VQSLOD=-3.242e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:149,59:208:99:0|1:195395289_A_T:2104,0,6199:195395289
chr3	195395347	rs78747381	G	A	3861.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=244;ExcessHet=3.9794;FS=0.000;MQ=55.61;MQRankSum=-6.360e-01;NEGATIVE_TRAIN_SITE;QD=6.79;ReadPosRankSum=-2.380e-01;SOR=0.704;VQSLOD=-3.185e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:174,70:244:99:0|1:195395289_A_T:2408,0,7421:195395289
chr3	195395354	rs80181010	A	G	3952.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.342e+00;DB;DP=271;ExcessHet=3.9794;FS=0.701;MQ=55.61;MQRankSum=-8.810e-01;NEGATIVE_TRAIN_SITE;QD=6.50;ReadPosRankSum=0.507;SOR=0.754;VQSLOD=-3.276e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:195,76:271:99:0|1:195395289_A_T:2542,0,7911:195395289
chr3	195395379	rs73216381	T	G	11642.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=334;ExcessHet=6.9897;FS=0.000;MQ=56.11;MQRankSum=3.66;NEGATIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-9.590e-01;SOR=0.704;VQSLOD=-3.569e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,196:334:99:6446,0,3560
chr3	195395663	rs78122231	C	T	428.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578e+00;DB;DP=71;ExcessHet=3.9794;FS=6.600;MQ=50.20;MQRankSum=-3.968e+00;NEGATIVE_TRAIN_SITE;QD=2.23;ReadPosRankSum=2.76;SOR=1.944;VQSLOD=-4.372e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,13:71:99:261,0,1974
chr3	195395726	rs13073726	T	A	362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.604e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=49.13;MQRankSum=-1.643e+00;QD=5.25;ReadPosRankSum=0.453;SOR=0.109;VQSLOD=-3.172e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:136,0,358
chr3	195398250	rs80193871	C	A	2092.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.272e+00;DB;DP=110;ExcessHet=3.9794;FS=2.242;MQ=43.52;MQRankSum=-1.482e+00;QD=7.50;ReadPosRankSum=0.759;SOR=0.429;VQSLOD=-4.062e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,35:110:99:934,0,2374
chr3	195398271	rs142433257	A	G	1593.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.73;DB;DP=87;ExcessHet=6.9897;FS=10.029;MQ=44.74;MQRankSum=-1.924e+00;QD=5.93;ReadPosRankSum=-2.150e-01;SOR=0.091;VQSLOD=-3.374e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,28:87:99:772,0,1846
chr3	195399678	rs9874761	G	T	3993.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.012e+00;DB;DP=99;ExcessHet=6.9897;FS=6.573;MQ=55.91;MQRankSum=-7.277e+00;QD=13.14;ReadPosRankSum=-2.450e-01;SOR=0.344;VQSLOD=-3.072e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,35:99:99:888,0,2236
chr3	195399747	rs9861965	A	G	1529.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=35;ExcessHet=6.9897;FS=0.000;MQ=56.86;MQRankSum=-1.692e+00;NEGATIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.452;SOR=0.421;VQSLOD=-2.150e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,13:35:99:424,0,795
chr3	195404542	rs201856881	T	G	403.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DB;DP=16;ExcessHet=6.9897;FS=2.521;MQ=47.14;MQRankSum=-9.110e-01;QD=5.77;ReadPosRankSum=-1.485e+00;SOR=1.070;VQSLOD=-3.833e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,3:16:43:43,0,333
chr3	195404649	rs116151155	A	G	1662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.295e+00;DB;DP=25;ExcessHet=6.9897;FS=1.962;MQ=45.72;MQRankSum=-3.758e+00;QD=10.27;ReadPosRankSum=0.668;SOR=0.746;VQSLOD=-3.955e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,18:25:99:371,0,142
chr3	195404754	rs372472446	T	G	552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=7;ExcessHet=6.9897;FS=3.933;MQ=41.77;MQRankSum=-7.560e-01;QD=11.76;ReadPosRankSum=1.07;SOR=0.102;VQSLOD=-3.256e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:93:93,0,135
chr3	195408621	rs142895621	AT	A	225.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=32.58;QD=32.26;SOR=4.174;VQSLOD=4.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr3	195410426	rs6789460	T	C	988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520e+00;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=58.36;MQRankSum=-2.799e+00;QD=10.19;ReadPosRankSum=-1.164e+00;SOR=0.760;VQSLOD=-1.415e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,12:44:99:322,0,1042
chr3	195410491	rs6797742	A	G	1791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=97;ExcessHet=3.9794;FS=5.611;MQ=57.69;MQRankSum=-4.798e+00;NEGATIVE_TRAIN_SITE;QD=7.79;ReadPosRankSum=1.89;SOR=0.398;VQSLOD=-3.177e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:69,28:97:99:577,0,1961
chr3	195410520	rs6805893	G	A	8051.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.520e-01;DB;DP=134;ExcessHet=6.9897;FS=0.881;MQ=58.05;MQRankSum=-2.004e+00;QD=20.18;ReadPosRankSum=0.618;SOR=0.638;VQSLOD=-9.819e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,90:134:99:2424,0,1041
chr3	195410751	rs9871557	C	T	1337.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.02;DB;DP=38;ExcessHet=6.9897;FS=3.753;MQ=57.58;MQRankSum=1.28;NEGATIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=-5.910e-01;SOR=0.245;VQSLOD=-1.939e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,7:38:99:172,0,992
chr3	195410794	rs6583276	T	C	338.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.091e+00;DB;DP=26;ExcessHet=3.9794;FS=7.218;MQ=56.74;MQRankSum=-3.112e+00;NEGATIVE_TRAIN_SITE;QD=6.38;ReadPosRankSum=1.41;SOR=0.059;VQSLOD=-2.200e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,5:26:51:51,0,740
chr3	195410820	rs6583277	C	T	349.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=15;ExcessHet=3.9794;FS=3.979;MQ=55.87;MQRankSum=-2.198e+00;NEGATIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.456;SOR=0.096;VQSLOD=-2.036e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:21:21,0,402
chr3	195412486	rs200072669	C	G	673.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=38.86;MQRankSum=-2.821e+00;QD=17.28;ReadPosRankSum=0.00;SOR=0.557;VQSLOD=-5.024e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,3:10:99:0|1:195412486_C_G:99,0,529:195412486
chr3	195412494	rs201604614	C	G	797.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.537e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=39.52;MQRankSum=-2.954e+00;QD=16.98;ReadPosRankSum=0.143;SOR=0.578;VQSLOD=-4.843e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,4:13:99:0|1:195412486_C_G:127,0,526:195412486
chr3	195412765	rs79145346	A	G	225.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=119;ExcessHet=3.9794;FS=4.718;MQ=57.14;MQRankSum=-7.443e+00;QD=1.04;ReadPosRankSum=-1.181e+00;SOR=0.520;VQSLOD=-5.230e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:110,9:119:77:77,0,3035
chr3	195412859	rs79486430	T	C	449.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=37;ExcessHet=6.9897;FS=9.103;MQ=53.71;MQRankSum=-6.180e-01;NEGATIVE_TRAIN_SITE;QD=3.85;ReadPosRankSum=1.62;SOR=2.483;VQSLOD=-3.169e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,3:37:24:24,0,1050
chr3	195412876	rs11185503	T	C	1886.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.796e+00;DB;DP=31;ExcessHet=6.9897;FS=1.764;MQ=51.88;MQRankSum=-2.740e-01;NEGATIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=-1.798e+00;SOR=1.408;VQSLOD=-2.517e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,27:31:82:859,0,82
chr3	195412920	rs111576530	C	T	310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=53.67;MQRankSum=0.811;NEGATIVE_TRAIN_SITE;QD=7.05;ReadPosRankSum=0.850;SOR=0.144;VQSLOD=-2.835e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,3:19:34:34,0,544
chr3	195412928	rs9840959	G	A	328.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=53.32;MQRankSum=0.380;NEGATIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-3.600e-01;SOR=0.207;VQSLOD=-2.844e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:232,0,310
chr3	195412985	rs74948728	C	G	451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=55.77;MQRankSum=-1.068e+00;NEGATIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=0.566;SOR=0.560;VQSLOD=-2.686e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:195412985_C_G:159,0,110:195412985
chr3	195412987	rs9841104	G	C	451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=56.21;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=-2.479e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:195412985_C_G:159,0,110:195412985
chr3	195412992	rs78973672	A	G	457.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=56.21;MQRankSum=-8.420e-01;NEGATIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=-2.473e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:72:0|1:195412985_C_G:162,0,72:195412985
chr3	195426490	rs3107775	A	G	5250.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=82;ExcessHet=6.9897;FS=4.793;MQ=60.00;MQRankSum=0.00;QD=16.16;ReadPosRankSum=1.08;SOR=0.971;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,45:82:99:1389,0,936
chr3	195426648	rs63642461	GTC	G	1087.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.147e+00;DB;DP=21;ExcessHet=6.9897;FS=3.079;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=1.25;SOR=0.317;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,15:21:99:578,0,192
chr3	195447628	rs59594493	C	CA	165.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=59.51;MQRankSum=-8.120e-01;POSITIVE_TRAIN_SITE;QD=5.18;ReadPosRankSum=-1.370e-01;SOR=0.195;VQSLOD=1.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:80:80,0,175
chr3	195447641	rs139325922	AG	A	296.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.60;MQRankSum=0.431;QD=4.95;ReadPosRankSum=1.25;SOR=0.274;VQSLOD=0.081;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:12:63:63,0,203
chr3	195447642	rs11185521	G	*,A	823.48	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.556e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.60;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-1.468e+00;SOR=3.877;VQSLOD=-2.568e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,4,8:12:63:642,253,203,113,0,63
chr3	195447795	rs147994480	CCCT	C	3036.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=218;ExcessHet=3.9794;FS=8.889;MQ=59.80;MQRankSum=1.31;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=0.538;SOR=0.987;VQSLOD=-7.780e-02;culprit=FS	GT:AD:DP:GQ:PL	0/1:178,40:218:99:1135,0,7754
chr3	195447805	.	T	C	187.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DP=226;ExcessHet=3.0103;FS=4.726;MQ=59.66;MQRankSum=-5.702e+00;QD=0.83;ReadPosRankSum=-3.695e+00;SOR=1.397;VQSLOD=-4.747e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:201,25:226:99:196,0,5814
chr3	195447886	rs7627924	G	C	4850.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=221;ExcessHet=6.9897;FS=1.166;MQ=59.16;MQRankSum=-3.494e+00;NEGATIVE_TRAIN_SITE;QD=8.92;ReadPosRankSum=0.522;SOR=0.799;VQSLOD=-1.690e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:166,55:221:99:1062,0,4354
chr3	195448085	rs4991624	T	C	153.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=51.77;MQRankSum=-1.884e+00;NEGATIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=-8.470e-01;SOR=0.157;VQSLOD=-3.105e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:82:82,0,231
chr3	195448129	rs10645654	T	TGTGA	173.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=50.35;MQRankSum=-5.660e-01;POSITIVE_TRAIN_SITE;QD=34.77;ReadPosRankSum=0.366;SOR=1.863;VQSLOD=0.755;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:6:81,6,0
chr3	195451880	rs142096782	A	G	45975.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.007e+00;DB;DP=425;ExcessHet=3.0103;FS=2.622;MQ=38.85;MQRankSum=-4.011e+00;QD=27.08;ReadPosRankSum=-2.040e-01;SOR=0.684;VQSLOD=-4.877e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,425:425:99:1|1:195451880_A_G:19143,1285,0:195451880
chr3	195451881	rs146888306	G	A	45975.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.370e+00;DB;DP=427;ExcessHet=3.0103;FS=2.639;MQ=38.85;MQRankSum=-4.011e+00;QD=25.46;ReadPosRankSum=-1.690e-01;SOR=0.694;VQSLOD=-4.867e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,427:427:99:1|1:195451880_A_G:19143,1285,0:195451880
chr3	195452770	rs2550231	G	A	1906.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-01;DB;DP=208;ExcessHet=3.0103;FS=14.983;MQ=46.59;MQRankSum=2.78;QD=9.16;ReadPosRankSum=0.194;SOR=1.344;VQSLOD=-5.009e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,80:208:99:1915,0,3313
chr3	195452799	rs2550232	C	T	2167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539e+00;DB;DP=218;ExcessHet=3.0103;FS=18.784;MQ=49.53;MQRankSum=2.48;NEGATIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-1.820e-01;SOR=1.261;VQSLOD=-4.972e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,92:218:99:2176,0,4651
chr3	195452805	rs138659995	T	C	10464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.134e+00;DB;DP=227;ExcessHet=3.9794;FS=1.819;MQ=51.49;MQRankSum=2.97;NEGATIVE_TRAIN_SITE;QD=16.20;ReadPosRankSum=2.62;SOR=0.568;VQSLOD=-3.592e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:131,96:227:99:2153,0,4807
chr3	195452951	rs2688542	G	C	23314.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800e-01;DB;DP=493;ExcessHet=6.9897;FS=1.120;MQ=58.93;MQRankSum=2.88;QD=15.25;ReadPosRankSum=0.603;SOR=0.788;VQSLOD=-9.535e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:225,268:493:99:6933,0,6129
chr3	195453017	rs144288174	GC	G	8669.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=632;ExcessHet=3.0103;FS=0.000;MQ=59.69;MQRankSum=-3.570e-01;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.598;SOR=0.722;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:348,284:632:99:8678,0,11052
chr3	195453064	rs2550233	T	G	44872.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=508;ExcessHet=3.0103;FS=0.000;MQ=58.57;MQRankSum=-2.358e+00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=1.26;SOR=0.664;VQSLOD=0.684;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,508:508:99:15470,1521,0
chr3	195453243	rs3828408	C	T	27682.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.48;DB;DP=346;ExcessHet=6.9897;FS=6.349;MQ=55.05;MQRankSum=-6.416e+00;QD=22.16;ReadPosRankSum=0.058;SOR=1.165;VQSLOD=-2.257e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:134,212:346:99:0|1:195453243_C_T:8703,0,6229:195453243
chr3	195453249	rs3828407	T	C	13654.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728e+00;DB;DP=370;ExcessHet=3.9794;FS=20.176;MQ=54.33;MQRankSum=-4.455e+00;NEGATIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=0.267;SOR=1.817;VQSLOD=-4.436e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:142,228:370:99:0|1:195453243_C_T:9002,0,6407:195453243
chr3	195453288	rs3828405	A	C	8184.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.29;DB;DP=591;ExcessHet=3.9794;FS=1.261;MQ=57.11;MQRankSum=4.82;NEGATIVE_TRAIN_SITE;QD=6.37;ReadPosRankSum=-4.000e-01;SOR=0.838;VQSLOD=-3.816e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:404,187:591:99:4352,0,13688
chr3	195453310	rs9758494	G	A	11006.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=730;ExcessHet=3.9794;FS=1.170;MQ=58.19;MQRankSum=-1.260e-01;QD=7.46;ReadPosRankSum=1.38;SOR=0.815;VQSLOD=-1.365e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:485,245:730:99:5400,0,15111
chr3	195453434	rs113099255	G	A	10574.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=696;ExcessHet=3.9794;FS=0.000;MQ=57.90;MQRankSum=-6.988e+00;QD=7.47;ReadPosRankSum=1.83;SOR=0.667;VQSLOD=-4.776e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:432,264:696:99:5747,0,11069
chr3	195453562	rs2550234	A	C	4809.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.34;DB;DP=96;ExcessHet=6.9897;FS=1.533;MQ=51.21;MQRankSum=-7.973e+00;QD=14.80;ReadPosRankSum=-8.900e-02;SOR=0.963;VQSLOD=-5.149e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,25:96:99:743,0,2607
chr3	195453670	.	C	T	252.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DP=26;ExcessHet=3.0103;FS=0.000;MQ=48.95;MQRankSum=-1.141e+00;QD=9.70;ReadPosRankSum=0.351;SOR=0.646;VQSLOD=-3.393e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,9:26:99:261,0,517
chr3	195456478	rs111854338	C	T	654.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.17;ReadPosRankSum=1.30;SOR=0.599;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,16:54:99:307,0,990
chr3	195456708	rs2550296	G	A	1043.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.349e+00;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.84;ReadPosRankSum=0.952;SOR=0.647;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,18:25:99:580,0,221
chr3	195460236	rs712011	G	A	353.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.780e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-1.670e-01;SOR=0.760;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:362,0,536
chr3	195460287	rs712010	G	A	160.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.374;SOR=0.473;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:169,0,248
chr3	195461408	rs903195	G	C	114.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-1.602e+00;SOR=0.941;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:123,0,276
chr3	195461592	rs1809785	T	G	429.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=48;ExcessHet=3.0103;FS=4.231;MQ=60.00;MQRankSum=0.00;QD=8.94;ReadPosRankSum=-7.870e-01;SOR=0.505;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,17:48:99:438,0,822
chr3	195466662	rs3844569	T	G	1738.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=36;ExcessHet=3.9794;FS=3.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.30;ReadPosRankSum=0.017;SOR=0.305;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:342,0,733
chr3	195467837	rs56381108	A	G	1873.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=62;ExcessHet=3.9794;FS=2.377;MQ=60.00;MQRankSum=0.00;QD=13.10;ReadPosRankSum=0.295;SOR=0.461;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,29:62:99:0|1:195467837_A_G:1084,0,1495:195467837
chr3	195467853	rs56050330	C	T	1742.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DB;DP=52;ExcessHet=3.9794;FS=6.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-2.710e-01;SOR=0.299;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,25:52:99:0|1:195467837_A_G:999,0,1328:195467837
chr3	195474402	rs4298072	A	C	664.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.07;ReadPosRankSum=2.60;SOR=0.595;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:241,0,485
chr3	195475799	rs3205933	C	T	1377.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e+00;DB;DP=75;ExcessHet=3.9794;FS=0.800;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.261;SOR=0.575;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,25:75:99:594,0,1604
chr3	195475989	rs7621695	G	A	3806.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940e-01;DB;DP=187;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.16;ReadPosRankSum=-1.238e+00;SOR=0.652;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,61:187:99:1241,0,3469
chr3	195476084	rs55798120	C	T	989.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.84;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=58.63;MQRankSum=1.13;NEGATIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=2.19;SOR=0.693;VQSLOD=-1.020e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,17:58:99:0|1:195476084_C_T:452,0,1275:195476084
chr3	195476085	rs2688497	A	G	5008.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=58.57;MQRankSum=-1.866e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=0.847;SOR=0.608;VQSLOD=0.779;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,58:58:99:1|1:195476084_C_T:2264,174,0:195476084
chr3	195476177	rs58402120	TTTCCTAGGGAAAAAGG	T	87.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.008e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=54.59;MQRankSum=-1.810e+00;QD=3.80;ReadPosRankSum=-4.890e-01;SOR=0.588;VQSLOD=0.146;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,1:11:13:13,0,663
chr3	195476193	rs59455239	G	T	513.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=54.98;MQRankSum=-8.870e-01;NEGATIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=-1.395e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:10:53:53,0,317
chr3	195477713	rs2291654	G	A	1850.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.84;DB;DP=14;ExcessHet=3.0103;FS=5.200;MQ=54.22;MQRankSum=-2.300e-02;NEGATIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=0.172;SOR=2.163;VQSLOD=-1.636e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:54:1|1:195477713_G_A:777,54,0:195477713
chr3	195477715	rs2291653	C	A	1185.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.737e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=54.83;MQRankSum=0.882;NEGATIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=-4.970e-01;SOR=1.132;VQSLOD=-2.369e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:195477713_G_A:777,54,0:195477713
chr3	195477786	rs6808605	C	T	1567.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=54;ExcessHet=3.9794;FS=0.804;MQ=59.39;MQRankSum=-6.660e-01;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=1.75;SOR=0.826;VQSLOD=0.401;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,25:54:99:636,0,1110
chr3	195477791	rs2291652	G	A	831.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=58;ExcessHet=3.0103;FS=8.660;MQ=59.52;MQRankSum=1.50;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.740;SOR=1.987;VQSLOD=0.303;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,30:58:99:840,0,1061
chr3	195478012	rs2291651	G	C	919.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.500e-01;DB;DP=5;ExcessHet=3.0103;FS=1.725;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=0.689;SOR=1.179;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:175,15,0
chr3	195479068	rs6809312	T	C	958.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.93;ReadPosRankSum=-2.300e-01;SOR=1.387;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:52:298,0,52
chr3	195479226	rs6792437	G	A	3085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=111;ExcessHet=3.9794;FS=0.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.922;SOR=0.751;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,52:111:99:1219,0,1336
chr3	195479256	rs2258447	T	C	13489.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.04;SOR=1.265;VQSLOD=19.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4300,426,0
chr3	195480153	rs78765346	G	A	2350.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.301;SOR=0.715;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:957,0,610
chr3	195480890	rs114789211	C	G	1298.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.12;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=0.042;SOR=1.219;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:674,0,757
chr3	195481444	rs2641722	C	T	1089.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.922e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=0.660;SOR=1.179;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:564,48,0
chr3	195484244	rs2550270	G	A	6093.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.185;DB;DP=74;ExcessHet=3.0103;FS=1.806;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=-2.146e+00;SOR=1.013;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2345,222,0
chr3	195485732	rs2641718	G	A	555.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=1.25;SOR=1.270;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:210,0,127
chr3	195487737	rs2246771	A	G	2685.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089e+00;DB;DP=66;ExcessHet=6.9897;FS=3.187;MQ=59.91;MQRankSum=0.00;QD=14.21;ReadPosRankSum=0.174;SOR=1.038;VQSLOD=5.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,34:66:99:867,0,834
chr3	195489009	rs2246901	C	A	3178.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DB;DP=136;ExcessHet=6.9897;FS=0.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-4.950e-01;SOR=0.745;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,56:136:99:1239,0,1870
chr3	195489067	rs2246980	C	G	1435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=132;ExcessHet=3.0103;FS=0.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-2.350e-01;SOR=0.758;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,62:132:99:1444,0,1667
chr3	195489335	rs71635068	C	T	246.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.45;ReadPosRankSum=0.524;SOR=0.976;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:58:146,0,58
chr3	195489669	rs2550263	C	T	2723.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DB;DP=79;ExcessHet=6.9897;FS=6.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=1.01;SOR=0.350;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,42:79:99:1042,0,989
chr3	195490284	rs2550261	T	C	1465.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DB;DP=28;ExcessHet=6.9897;FS=2.774;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=0.806;SOR=1.292;VQSLOD=6.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,20:28:99:649,0,242
chr3	195490838	rs377595393	ATCC	A	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=18;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.252;SOR=2.179;VQSLOD=6.54;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,6:18:99:0|1:195490838_ATCC_A:216,0,1385:195490838
chr3	195490842	rs34858176	AGATG	A	207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=18;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.141;SOR=2.179;VQSLOD=6.54;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,6:18:99:0|1:195490838_ATCC_A:216,0,1385:195490838
chr3	195492027	rs11926236	T	C	13915.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.187;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4169,404,0
chr3	195495916	rs2550240	G	C	1860.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.701;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.170;SOR=0.680;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,77:165:99:1869,0,2099
chr3	195496129	rs2688492	C	T	3784.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.019e+00;DB;DP=31;ExcessHet=3.0103;FS=1.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=1.27;SOR=1.068;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1145,93,0
chr3	195497174	rs2259102	C	G	8106.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.17;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.545;SOR=0.719;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3386,339,0
chr3	195497743	rs2260685	T	C	1020.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=98;ExcessHet=3.0103;FS=0.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=0.751;SOR=0.813;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,42:98:99:1029,0,1235
chr3	195497809	rs2259153	T	C	3379.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=58;ExcessHet=3.9794;FS=0.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-2.680e-01;SOR=0.858;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1903,173,0
chr3	195498859	rs2641779	T	A	3128.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.16;SOR=5.994;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:912,72,0
chr3	195501149	rs2259292	C	T	4006.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.199e+00;DB;DP=100;ExcessHet=1.5490;FS=5.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=-7.030e-01;SOR=0.409;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3055,299,0
chr3	195501258	rs2259331	T	C	2346.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.217;DB;DP=44;ExcessHet=3.9794;FS=2.068;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=0.853;SOR=1.096;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1460,132,0
chr3	195505072	rs2550252	C	T	223.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=0.231;SOR=0.859;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:195505072_C_T:90,6,0:195505072
chr3	195505091	rs2688512	G	A	577.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.68;SOR=5.283;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:195505072_C_T:205,15,0:195505072
chr3	195505417	rs2259419	G	A	2076.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.416e+00;DB;DP=36;ExcessHet=1.5490;FS=4.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=-2.090e+00;SOR=0.473;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1201,108,0
chr3	195505664	rs2688513	G	A	23191.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.855e+00;DB;DP=282;ExcessHet=3.0103;FS=2.889;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.01;ReadPosRankSum=1.08;SOR=1.096;VQSLOD=6.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,282:282:99:9620,845,0
chr3	195506559	.	A	G	111.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.545e+00;DP=13;ExcessHet=3.0103;FS=0.000;MQ=47.97;MQRankSum=-4.330e-01;QD=8.58;ReadPosRankSum=-5.640e-01;SOR=0.941;VQSLOD=-3.631e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:119,0,127
chr3	195506652	rs62282469	A	G	19627.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=6;ExcessHet=3.0103;FS=0.575;MQ=58.53;MQRankSum=2.38;QD=20.93;ReadPosRankSum=0.745;SOR=0.680;VQSLOD=-8.055e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:195506626_G_A:270,18,0:195506626
chr3	195507062	rs199822551	C	T	6814.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=518;ExcessHet=3.0103;FS=1.742;MQ=55.55;MQRankSum=1.67;NEGATIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=2.36;SOR=0.577;VQSLOD=-3.054e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:257,258:518:99:6823,0,6671
chr3	195507591	rs399520	C	T	3574.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=553;ExcessHet=3.0103;FS=1.204;MQ=50.38;MQRankSum=-2.421e+00;NEGATIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=-8.140e-01;SOR=0.589;VQSLOD=-3.648e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:374,179:553:99:3582,0,9050
chr3	195507915	rs71635073	T	C	1745.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530e-01;DB;DP=307;ExcessHet=3.0103;FS=3.819;MQ=58.20;MQRankSum=1.50;NEGATIVE_TRAIN_SITE;QD=5.68;ReadPosRankSum=-2.788e+00;SOR=0.956;VQSLOD=-3.081e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:232,75:307:99:0|1:195507915_T_C:1754,0,9292:195507915
chr3	195509429	rs28542401	A	*,G	13687.76	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.47;DB;DP=466;ExcessHet=1.5490;FS=0.000;MQ=57.26;MQRankSum=-7.220e-01;QD=13.30;ReadPosRankSum=0.212;SOR=0.723;VQSLOD=-1.562e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:1,271,194:466:99:12903,5655,7082,4999,0,4108
chr3	195509879	.	A	G	2305.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.02;DP=547;ExcessHet=3.9794;FS=7.000;MQ=52.76;MQRankSum=-2.052e+00;NEGATIVE_TRAIN_SITE;QD=3.37;ReadPosRankSum=2.31;SOR=0.488;VQSLOD=-2.307e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:224,125:547:99:3607,0,11531
chr3	195509880	rs201889850	C	T	2340.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=550;ExcessHet=3.9794;FS=6.995;MQ=52.72;MQRankSum=-1.897e+00;NEGATIVE_TRAIN_SITE;QD=3.41;ReadPosRankSum=2.33;SOR=0.480;VQSLOD=-2.266e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:225,127:550:99:3609,0,11524
chr3	195509955	.	AGAG	*,CGAG	9839.90	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.74;DP=569;ExcessHet=1.5490;FS=1.307;MQ=57.42;MQRankSum=1.09;QD=9.36;ReadPosRankSum=-1.229e+00;SOR=0.599;VQSLOD=0.182;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,321,247:569:99:19768,9851,8976,9774,0,10846
chr3	195509964	rs71635079	A	*,G	10037	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=7.88;DB;DP=572;ExcessHet=1.5490;FS=1.298;MQ=57.47;MQRankSum=-4.967e+00;NEGATIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-4.571e+00;SOR=0.598;VQSLOD=-4.078e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:0,321,251:572:99:21904,10047,9145,9852,0,8820
chr3	195510707	rs142559357	T	G	5611.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=569;ExcessHet=3.0103;FS=12.376;MQ=53.20;MQRankSum=2.22;NEGATIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=0.505;SOR=1.491;VQSLOD=-2.525e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:404,165:569:99:0|1:195510707_T_G:5619,0,16353:195510707
chr3	195510718	rs80005560	G	T	5583.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869e+00;DB;DP=586;ExcessHet=3.0103;FS=12.507;MQ=53.71;MQRankSum=1.86;NEGATIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=2.70;SOR=1.530;VQSLOD=-2.665e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:422,164:586:99:0|1:195510707_T_G:5589,0,17263:195510707
chr3	195510732	rs80145081	G	A	5363.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210e-01;DB;DP=588;ExcessHet=3.0103;FS=11.089;MQ=54.56;MQRankSum=1.95;NEGATIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=6.55;SOR=1.373;VQSLOD=-4.299e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:434,154:588:99:0|1:195510707_T_G:5371,0,17934:195510707
chr3	195510745	rs2453138	G	A	4994.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.174e+00;DB;DP=585;ExcessHet=3.0103;FS=10.018;MQ=55.55;MQRankSum=1.68;NEGATIVE_TRAIN_SITE;QD=8.54;ReadPosRankSum=7.39;SOR=1.165;VQSLOD=-4.795e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:441,144:585:99:0|1:195510707_T_G:5003,0,18377:195510707
chr3	195510786	rs2948677	T	G	20356.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DB;DP=754;ExcessHet=3.9794;FS=1.748;MQ=57.08;MQRankSum=-7.280e-01;NEGATIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=2.95;SOR=0.646;VQSLOD=-2.619e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:467,287:754:99:0|1:195510762_G_A:10383,0,18030:195510762
chr3	195510827	rs413807	C	T	5451.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=902;ExcessHet=3.0103;FS=1.123;MQ=58.47;MQRankSum=-1.680e+00;QD=6.61;ReadPosRankSum=1.36;SOR=0.772;VQSLOD=-1.457e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:551,274:902:99:6075,0,17624
chr3	195510900	rs201192572	G	T	13752.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.080e-01;DB;DP=962;ExcessHet=3.9794;FS=2.473;MQ=59.14;MQRankSum=1.20;QD=9.29;ReadPosRankSum=-5.410e-01;SOR=0.719;VQSLOD=-1.336e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:574,281:962:99:8621,0,15635
chr3	195510943	rs201313220	G	T	11836.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.335e+00;DB;DP=980;ExcessHet=3.9794;FS=0.000;MQ=59.40;MQRankSum=2.10;NEGATIVE_TRAIN_SITE;QD=7.55;ReadPosRankSum=1.90;SOR=0.726;VQSLOD=-9.562e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:706,274:980:99:5278,0,27321
chr3	195511446	rs78227722	C	G	4976.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.91;DB;DP=537;ExcessHet=1.5490;FS=3.994;MQ=52.80;MQRankSum=1.32;NEGATIVE_TRAIN_SITE;QD=3.49;ReadPosRankSum=0.110;SOR=0.633;VQSLOD=-2.678e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:325,37:537:99:4695,0,7824
chr3	195511451	.	T	C	3254.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.35;DP=529;ExcessHet=1.5490;FS=1.327;MQ=52.54;MQRankSum=2.32;NEGATIVE_TRAIN_SITE;QD=2.31;ReadPosRankSum=-9.390e-01;SOR=0.699;VQSLOD=-4.047e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:332,22:529:99:3984,0,13027
chr3	195511590	rs3103955	A	G	61807.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.41;DB;DP=901;ExcessHet=3.0103;FS=0.000;MQ=55.79;MQRankSum=0.587;NEGATIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=1.72;SOR=0.640;VQSLOD=-2.599e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,899:901:99:34989,2697,0
chr3	195511668	rs3107748	G	A	6064.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=1271;ExcessHet=3.0103;FS=2.020;MQ=58.55;MQRankSum=6.40;QD=4.77;ReadPosRankSum=2.70;SOR=0.943;VQSLOD=-3.952e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:934,337:1271:99:6073,0,24781
chr3	195512181	rs202182738	G	A	2467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.902e+00;DB;DP=961;ExcessHet=3.0103;FS=1.649;MQ=57.88;MQRankSum=-1.005e+00;NEGATIVE_TRAIN_SITE;QD=2.57;ReadPosRankSum=-3.690e+00;SOR=0.643;VQSLOD=-3.189e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:828,131:961:99:2476,0,34678
chr3	195512186	rs202060675	T	C	74365.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=945;ExcessHet=3.0103;FS=0.000;MQ=57.68;QD=27.89;SOR=0.806;VQSLOD=0.777;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,943:945:99:34899,2927,0
chr3	195512212	rs75588776	G	T	3626.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.534e+00;DB;DP=892;ExcessHet=3.0103;FS=3.169;MQ=56.36;MQRankSum=-1.016e+00;NEGATIVE_TRAIN_SITE;QD=4.07;ReadPosRankSum=-8.600e-01;SOR=0.982;VQSLOD=-2.904e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:717,173:892:99:3635,0,21030
chr3	195512245	rs62282486	T	C	67637.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=855;ExcessHet=3.0103;FS=0.000;MQ=56.53;QD=21.65;SOR=0.724;VQSLOD=-1.167e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,853:855:99:36636,2627,0
chr3	195512287	rs113602668	G	A	3491.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.060e-01;DB;DP=794;ExcessHet=3.0103;FS=1.334;MQ=56.54;MQRankSum=-3.522e+00;NEGATIVE_TRAIN_SITE;QD=4.40;ReadPosRankSum=2.48;SOR=0.839;VQSLOD=-4.255e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:614,180:794:99:3500,0,17536
chr3	195513068	.	C	G	5968.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022e+00;DP=1061;ExcessHet=3.0103;FS=1.236;MQ=59.71;MQRankSum=-5.946e+00;QD=5.86;ReadPosRankSum=-1.200e-01;SOR=0.606;VQSLOD=-3.522e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:754,264:1061:99:5977,0,26120
chr3	195513102	rs3103958	A	G	33611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=952;ExcessHet=6.9897;FS=0.000;MQ=59.72;MQRankSum=-2.392e+00;QD=14.59;ReadPosRankSum=1.27;SOR=0.645;VQSLOD=-1.222e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:376,533:952:99:17592,0,9588
chr3	195513364	rs79986529	C	T	17754.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.270e-01;DB;DP=772;ExcessHet=6.9897;FS=3.609;MQ=56.90;MQRankSum=-5.572e+00;QD=8.87;ReadPosRankSum=-2.443e+00;SOR=0.953;VQSLOD=-4.009e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:588,184:772:99:0|1:195513364_C_T:5101,0,23362:195513364
chr3	195513413	.	G	GGGTGGCGTGACCTGTGGATACTGAGGAATTGTCGGTGACAGGAAGAGGGGTGGCGTGACCGGTGGATGCTGAGGAAGTGCTGGTGACAGGAAGAGA	265.29	PASS	AC=1;AF=0.500;AN=2;DP=345;ExcessHet=3.0103;FS=0.000;MQ=53.23;QD=0.77;SOR=0.643;VQSLOD=0.226;culprit=QD	GT:AD:DP:GQ:PL	0/1:345,0:345:99:274,0,13249
chr3	195513680	rs7372250	A	T	4908.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.641e+00;DB;DP=1002;ExcessHet=3.0103;FS=1.969;MQ=57.43;MQRankSum=0.354;NEGATIVE_TRAIN_SITE;QD=4.90;ReadPosRankSum=0.265;SOR=0.828;VQSLOD=-2.388e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:727,275:1002:99:4917,0,11219
chr3	195513743	rs59668135	G	T	16783.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.692e+00;DB;DP=883;ExcessHet=6.9897;FS=0.000;MQ=58.12;MQRankSum=-2.100e-02;QD=6.79;ReadPosRankSum=-6.070e-01;SOR=0.658;VQSLOD=-1.190e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:632,251:883:99:4744,0,18539
chr3	195513779	rs3103959	C	T	6141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=693;ExcessHet=3.0103;FS=0.000;MQ=55.04;MQRankSum=-4.018e+00;NEGATIVE_TRAIN_SITE;QD=8.86;ReadPosRankSum=0.332;SOR=0.669;VQSLOD=-3.909e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:491,202:693:99:0|1:195513779_C_T:6150,0,18736:195513779
chr3	195514078	rs201899151	G	T	231.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=15;ExcessHet=3.9794;FS=2.793;MQ=40.18;MQRankSum=1.11;QD=10.07;ReadPosRankSum=1.29;SOR=1.828;VQSLOD=-4.696e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,4:15:99:0|1:195514044_C_A:129,0,534:195514044
chr3	195514105	rs199800263	G	A	33.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=40.00;QD=33.91;SOR=1.609;VQSLOD=-4.751e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:195514105_G_A:45,3,0:195514105
chr3	195514324	rs78009073	G	A	1266.15	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.500e-02;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=48.33;MQRankSum=2.83;QD=22.61;ReadPosRankSum=1.42;SOR=0.440;VQSLOD=-3.870e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,53:56:91:1283,91,0
chr3	195514887	.	A	AGTGACAGGAAGAGGCGTGGTGTCACCTGTGGATGCTGAGGAAGGGCTAGTGACAGGCAGAGGGGTGGCCTGACCTGTGGATGCTGAGGAAGCATCGGTGACAAGAAGAGGGGTGGTGTCACCTGTGGATACTGAGGAAAGGCTG	5282.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051e+00;DP=38;ExcessHet=3.9794;FS=0.000;MQ=37.75;MQRankSum=1.33;QD=34.64;ReadPosRankSum=-1.071e+00;SOR=0.750;VQSLOD=0.111;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,0:38:99:1652,0,1460
chr3	195515594	rs13095016	C	G	13512.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.06;DB;DP=227;ExcessHet=1.5490;FS=1.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=0.567;SOR=0.866;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,227:227:99:1|1:195515594_C_G:9702,692,0:195515594
chr3	195515617	rs2641776	G	C	18441.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.81;SOR=1.588;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,195:195:99:1|1:195515594_C_G:8683,596,0:195515594
chr3	195516630	rs3103954	G	T	14962.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.202e+00;DB;DP=196;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=-1.560e+00;SOR=0.701;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,196:196:99:6067,587,0
chr3	195516878	rs2177336	T	C	10522.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=0.842;SOR=0.710;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3922,380,0
chr3	195517258	rs1106502	G	A	12901.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.562e+00;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=-2.300e-02;SOR=0.757;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4504,425,0
chr3	195517321	rs1104760	G	A	14993.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.537e+00;DB;DP=166;ExcessHet=3.0103;FS=2.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.51;ReadPosRankSum=2.39;SOR=0.437;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5341,501,0
chr3	195517553	rs882605	A	C	10723.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=106;ExcessHet=3.0103;FS=2.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=0.711;SOR=0.618;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3517,318,0
chr3	195518112	rs142781032	T	TGTCTCCTGCGTAACA	11217.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.370e-01;DB;DP=86;ExcessHet=3.0103;FS=0.549;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.15;ReadPosRankSum=-4.054e+00;SOR=0.631;VQSLOD=4.19;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,86:86:99:4313,290,0
chr3	195518330	rs3107764	C	G	3945.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.278;DB;DP=66;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=0.607;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2082,198,0
chr3	195538501	rs143120396	TTC	T	313.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780e-01;DB;DP=39;ExcessHet=6.9897;FS=3.843;MQ=60.00;MQRankSum=0.00;QD=2.96;ReadPosRankSum=0.067;SOR=0.291;VQSLOD=5.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,5:39:69:69,0,1080
chr3	195595632	rs13087251	A	G	4897.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.95;DB;DP=102;ExcessHet=3.9794;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=-1.383e+00;SOR=0.805;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,56:102:99:1584,0,1107
chr3	195596636	rs13084875	C	T	1276.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.92;ReadPosRankSum=-6.380e-01;SOR=0.919;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:97:339,0,97
chr3	195603652	rs9815549	T	G	933.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=15;ExcessHet=3.9794;FS=2.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=0.114;SOR=1.445;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:305,0,203
chr3	195612243	.	T	A	84.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DP=8;ExcessHet=6.9897;FS=8.300;MQ=60.00;MQRankSum=0.00;QD=2.36;ReadPosRankSum=0.395;SOR=2.925;VQSLOD=12.87;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:31:0|1:195612239_A_C:31,0,177:195612239
chr3	195664923	.	A	G	162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e+00;DP=99;ExcessHet=3.0103;FS=3.721;MQ=58.42;MQRankSum=-3.358e+00;NEGATIVE_TRAIN_SITE;QD=1.64;ReadPosRankSum=-5.290e-01;SOR=1.301;VQSLOD=-3.216e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:82,17:99:99:171,0,2333
chr3	195690117	.	C	T	223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-02;DP=44;ExcessHet=3.9794;FS=6.810;MQ=50.61;MQRankSum=-3.639e+00;NEGATIVE_TRAIN_SITE;QD=1.99;ReadPosRankSum=2.89;SOR=2.200;VQSLOD=-4.529e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,5:44:84:0|1:195690117_C_T:84,0,1696:195690117
chr3	195690122	rs201722788	A	G	208.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=48;ExcessHet=3.9794;FS=6.623;MQ=51.44;MQRankSum=-3.695e+00;NEGATIVE_TRAIN_SITE;QD=1.72;ReadPosRankSum=3.22;SOR=2.368;VQSLOD=-4.739e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,5:48:81:0|1:195690117_C_T:81,0,1721:195690117
chr3	195692311	rs62282793	T	C	258.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=56.13;MQRankSum=-5.020e+00;NEGATIVE_TRAIN_SITE;QD=4.23;ReadPosRankSum=1.04;SOR=0.821;VQSLOD=-4.709e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,3:27:24:24,0,761
chr3	195692347	rs62282794	G	A	371.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492e+00;DB;DP=44;ExcessHet=3.9794;FS=3.148;MQ=56.40;MQRankSum=-4.942e+00;NEGATIVE_TRAIN_SITE;QD=3.44;ReadPosRankSum=0.573;SOR=0.383;VQSLOD=-4.241e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,8:44:80:80,0,1068
chr3	195692419	rs77887672	C	G	167.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100e-01;DB;DP=61;ExcessHet=3.9794;FS=9.109;MQ=57.59;MQRankSum=-5.355e+00;QD=1.05;ReadPosRankSum=1.19;SOR=1.164;VQSLOD=-3.879e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:53,8:61:40:40,0,1430
chr3	195694256	.	G	GA	63.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=6;ExcessHet=3.0103;FS=0.000;MQ=34.12;MQRankSum=-1.282e+00;QD=10.57;ReadPosRankSum=1.28;SOR=0.307;VQSLOD=0.056;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:72:0|1:195694253_A_G:72,0,220:195694253
chr3	195694296	rs373792502	TA	T	48.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=34.12;MQRankSum=-1.383e+00;QD=12.09;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=0.527;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:55:57,0,55
chr3	195701115	rs3749423	A	C	974.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.64;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=59.39;MQRankSum=0.00;QD=12.82;ReadPosRankSum=-1.650e-01;SOR=0.395;VQSLOD=-5.871e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,15:51:99:476,0,1259
chr3	195701472	.	A	G	3960.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.043e+00;DP=138;ExcessHet=6.9897;FS=0.967;MQ=44.73;MQRankSum=-3.046e+00;QD=9.88;ReadPosRankSum=0.123;SOR=0.429;VQSLOD=-3.950e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:111,27:138:99:0|1:195701472_A_G:744,0,4929:195701472
chr3	195701483	rs377526928	TCCA	T	3766.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.860e-01;DB;DP=114;ExcessHet=6.9897;FS=1.654;MQ=43.19;MQRankSum=-2.787e+00;QD=11.11;ReadPosRankSum=0.227;SOR=0.521;VQSLOD=0.085;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:92,22:114:99:0|1:195701472_A_G:664,0,4512:195701472
chr3	195702421	rs12637847	C	G	1265.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.15;DB;DP=72;ExcessHet=3.9794;FS=3.837;MQ=58.72;MQRankSum=-2.471e+00;NEGATIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.302;SOR=0.223;VQSLOD=-1.824e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,20:72:99:573,0,1756
chr3	195706432	rs151293348	A	G	37.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=25;ExcessHet=3.0103;FS=3.750;MQ=49.60;MQRankSum=-2.756e+00;NEGATIVE_TRAIN_SITE;QD=1.49;ReadPosRankSum=1.67;SOR=0.086;VQSLOD=-2.931e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,4:25:46:46,0,715
chr3	195706924	.	T	C	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508e+00;DP=36;ExcessHet=3.0103;FS=2.206;MQ=57.97;MQRankSum=-2.857e+00;NEGATIVE_TRAIN_SITE;QD=5.51;ReadPosRankSum=-1.400e-01;SOR=0.207;VQSLOD=-1.933e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,7:36:99:0|1:195706924_T_C:207,0,1844:195706924
chr3	195706927	.	G	C	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.187;DP=36;ExcessHet=3.0103;FS=2.206;MQ=57.97;MQRankSum=-2.857e+00;NEGATIVE_TRAIN_SITE;QD=5.51;ReadPosRankSum=-3.600e-01;SOR=0.207;VQSLOD=-1.929e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,7:36:99:0|1:195706924_T_C:207,0,1844:195706924
chr3	195708880	rs2620600	C	T	380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=57.34;MQRankSum=-3.660e-01;NEGATIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=0.00;SOR=1.371;VQSLOD=-1.569e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:110,0,63
chr3	195708973	rs1056753	C	G	303.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DB;DP=26;ExcessHet=6.9897;FS=7.628;MQ=53.28;MQRankSum=-3.075e+00;NEGATIVE_TRAIN_SITE;QD=4.47;ReadPosRankSum=0.741;SOR=0.141;VQSLOD=-2.149e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,5:26:76:76,0,639
chr3	195709088	rs62282854	T	C	706.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e+00;DB;DP=31;ExcessHet=6.9897;FS=5.537;MQ=43.19;MQRankSum=0.744;QD=7.36;ReadPosRankSum=0.234;SOR=1.329;VQSLOD=-3.664e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,8:31:99:125,0,687
chr3	195710815	rs199721275	C	T	1428.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.869e+00;DB;DP=39;ExcessHet=6.9897;FS=5.322;MQ=47.13;MQRankSum=-2.568e+00;QD=11.08;ReadPosRankSum=-3.700e-01;SOR=1.968;VQSLOD=-3.259e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,10:39:99:261,0,1069
chr3	195710829	rs62282858	A	C	3064.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=57;ExcessHet=6.9897;FS=0.000;MQ=50.67;MQRankSum=-8.940e-01;NEGATIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=-6.920e-01;SOR=0.941;VQSLOD=-2.965e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,38:57:99:1317,0,564
chr3	195710971	rs4927836	G	T	4417.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114e+00;DB;DP=339;ExcessHet=3.9794;FS=8.728;MQ=54.84;MQRankSum=-6.680e-01;NEGATIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=1.03;SOR=1.243;VQSLOD=-1.910e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:247,92:339:99:1573,0,6389
chr3	195711182	rs202020169	A	C	2370.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.33;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=40.48;MQRankSum=-1.687e+00;QD=26.64;ReadPosRankSum=-6.690e-01;SOR=1.179;VQSLOD=-4.770e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:620,0,465
chr3	195711497	rs199785998	C	G	298.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=53.49;MQRankSum=1.02;NEGATIVE_TRAIN_SITE;QD=3.21;ReadPosRankSum=-1.113e+00;SOR=0.656;VQSLOD=-3.673e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,20:93:99:307,0,1749
chr3	195711550	rs4927694	T	C	1287.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=43;ExcessHet=6.9897;FS=1.845;MQ=46.81;MQRankSum=-3.760e-01;QD=13.01;ReadPosRankSum=0.172;SOR=0.922;VQSLOD=-3.597e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,18:43:99:446,0,606
chr3	195711648	rs141342829	A	G	686.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=39.34;MQRankSum=-1.282e+00;QD=31.22;ReadPosRankSum=0.524;SOR=2.494;VQSLOD=-5.037e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:117,0,24
chr3	195723680	rs4927701	C	G	1773.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.422e+00;DB;DP=35;ExcessHet=6.9897;FS=3.904;MQ=58.25;MQRankSum=-2.542e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=-8.700e-02;SOR=0.454;VQSLOD=-2.754e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,22:35:99:647,0,303
chr3	195723734	rs4927844	C	T	1574.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=53;ExcessHet=6.9897;FS=9.644;MQ=56.53;MQRankSum=-4.386e+00;NEGATIVE_TRAIN_SITE;QD=6.76;ReadPosRankSum=0.718;SOR=0.330;VQSLOD=-2.654e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,17:53:99:415,0,963
chr3	195723937	rs62283430	A	G	4521.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=35;ExcessHet=3.9794;FS=2.983;MQ=51.06;MQRankSum=0.051;NEGATIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=1.19;SOR=0.677;VQSLOD=-2.606e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1208,105,0
chr3	195724651	rs11924263	C	T	258.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.931e+00;DB;DP=18;ExcessHet=3.0103;FS=2.029;MQ=56.00;MQRankSum=-9.280e-01;NEGATIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=0.544;SOR=1.445;VQSLOD=-1.965e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:267,0,214
chr3	195778972	rs1805051	C	T	791.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-5.000e-01;SOR=0.672;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:800,0,922
chr3	195787308	rs9846149	C	G	1943.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=4.892;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:499,42,0
chr3	195789414	rs2239641	T	C	2880.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=1.295;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:666,60,0
chr3	195789428	rs507131	C	A	3365.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=1.148;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:962,90,0
chr3	195789708	rs2239640	G	T	4898.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.81;ReadPosRankSum=-5.600e-01;SOR=0.758;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1368,134,0
chr3	195790022	rs499591	A	T	215.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.25;SOR=3.912;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr3	195792272	rs200523802	C	CA	72.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.57;ReadPosRankSum=0.00;SOR=0.330;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:81:81,0,167
chr3	195792288	.	CGGG	C,CG	1477.53	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.82;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.58;ReadPosRankSum=0.489;SOR=3.080;VQSLOD=6.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,3:8:48:231,48,90,73,0,79
chr3	195794241	rs9858727	A	T	661.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.85;SOR=5.784;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr3	195798258	rs480760	T	C	16074.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=0.950;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4803,467,0
chr3	195798522	rs9990392	C	T	2079.21	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.12;ReadPosRankSum=-1.303e+00;SOR=2.621;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:874,69,0
chr3	195800811	rs3817672	C	T	3207.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=38;ExcessHet=3.0103;FS=1.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.76;ReadPosRankSum=0.308;SOR=0.465;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1375,114,0
chr3	195801938	rs5021790	T	A	284.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=10.414;MQ=58.88;NEGATIVE_TRAIN_SITE;QD=8.61;SOR=4.673;VQSLOD=-3.967e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:291,27,0
chr3	195924985	.	G	A	36.23	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=18.11;SOR=0.693;VQSLOD=13.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr3	195925022	rs6779277	C	G	258.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=0.674;SOR=0.473;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:24:72,0,24
chr3	195925103	rs2280530	C	T	618.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=-7.690e-01;SOR=1.302;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:50:340,0,50
chr3	195926234	rs939892	T	C	1503.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=15;ExcessHet=3.0103;FS=2.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.33;ReadPosRankSum=0.857;SOR=1.958;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:129,0,324
chr3	195926552	rs7630971	C	T	373.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.36;DB;DP=34;ExcessHet=3.0103;FS=8.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=2.00;SOR=2.985;VQSLOD=14.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:382,0,621
chr3	195935124	rs12494866	G	A	177.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=58.04;POSITIVE_TRAIN_SITE;QD=27.11;SOR=3.611;VQSLOD=4.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr3	195935207	rs12497404	C	G	1903.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=0.786;SOR=0.746;VQSLOD=6.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,16:21:99:462,0,133
chr3	195936382	rs11719281	G	A	830.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520e-01;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=-1.050e-01;SOR=0.753;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,37:86:99:839,0,1266
chr3	195936446	rs4916502	C	T	1982.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910e+00;DB;DP=26;ExcessHet=3.9794;FS=1.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.289;SOR=0.443;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:433,0,371
chr3	195936561	rs4916503	C	T	549.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.72;ReadPosRankSum=0.319;SOR=4.047;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	195937311	rs71621226	G	GAAAT	821.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.25;ReadPosRankSum=0.385;SOR=0.957;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,1:10:15:0|1:195937311_G_GAAAT:15,0,1561:195937311
chr3	195937315	rs113743596	G	GAAAAGA	970.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.26;ReadPosRankSum=0.385;SOR=1.085;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,1:10:15:0|1:195937311_G_GAAAT:15,0,1561:195937311
chr3	195937326	rs6795617	G	A	1568.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.11;ReadPosRankSum=-2.300e-01;SOR=1.487;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:51:0|1:195937311_G_GAAAT:51,0,1558:195937311
chr3	195937678	rs12718059	G	A	2158.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.078e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=0.055;SOR=0.833;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:364,0,520
chr3	195950608	rs71161915	TA	T	163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.66;ReadPosRankSum=-6.270e-01;SOR=1.085;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:172,0,117
chr3	195955762	rs939885	G	A	7113.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=144;ExcessHet=1.5490;FS=0.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.262;SOR=0.642;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,74:144:99:1857,0,1618
chr3	195966258	rs1580820	G	A	1326.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.320e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=0.00;SOR=0.649;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:166,0,267
chr3	195968281	rs57987393	A	G	362.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.24;ReadPosRankSum=0.431;SOR=1.329;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:68:155,0,68
chr3	195968643	rs1045075	G	A	2483.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=37;ExcessHet=3.9794;FS=2.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=0.382;SOR=0.940;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,11:37:99:244,0,734
chr3	195984956	rs61442465	G	A	261.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,72
chr3	195994049	.	C	CA	377	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DP=12;ExcessHet=6.9897;FS=2.336;MQ=59.79;MQRankSum=-2.240e-01;QD=8.77;ReadPosRankSum=-8.910e-01;SOR=1.061;VQSLOD=-5.660e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:12:37:106,0,37
chr3	196022750	rs2293160	T	C	1643.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.770e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=-3.050e-01;SOR=0.621;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:124,0,341
chr3	196042137	rs34104361	CT	C	1186.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.350e-01;DB;DP=22;ExcessHet=3.9794;FS=1.362;MQ=60.00;MQRankSum=0.00;QD=15.82;ReadPosRankSum=0.158;SOR=0.395;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,14:22:99:284,0,143
chr3	196044669	rs55903345	C	G	346.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:74,0,66
chr3	196044894	rs2270769	G	C	7559.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=134;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=-5.400e-02;SOR=0.708;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,67:134:99:1650,0,1935
chr3	196051403	rs2280526	A	G	607.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=1.24;SOR=0.504;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:60:182,0,60
chr3	196054439	rs6785339	T	G	3824.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DB;DP=40;ExcessHet=3.9794;FS=1.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=-4.700e-02;SOR=0.876;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,17:40:99:466,0,631
chr3	196054488	rs6782336	A	G	1626.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640e-01;DB;DP=16;ExcessHet=3.9794;FS=6.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=1.54;SOR=0.172;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:153,0,378
chr3	196088809	rs368893517	TA	T	343.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.850e-01;DB;DP=28;ExcessHet=6.9897;FS=4.044;MQ=59.99;MQRankSum=0.00;QD=3.01;ReadPosRankSum=0.399;SOR=0.379;VQSLOD=5.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,4:28:16:16,0,461
chr3	196096451	rs9860931	C	T	937.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.897e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=0.928;SOR=0.639;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:562,48,0
chr3	196118447	rs4579046	T	A	451.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=11;ExcessHet=1.5490;FS=6.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=-4.310e-01;SOR=4.047;VQSLOD=12.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:36:361,36,0
chr3	196118621	rs6583305	A	T	1402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=55;ExcessHet=3.9794;FS=0.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-1.870e-01;SOR=0.606;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:742,0,504
chr3	196118849	.	GAA	GA,G	470.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.790e-01;DP=7;ExcessHet=3.9794;FS=2.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=2.15;SOR=0.330;VQSLOD=6.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,4,3:7:52:294,73,52,93,0,72
chr3	196118868	rs6779332	A	C	564.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.24;ReadPosRankSum=1.16;SOR=0.399;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:340,24,0
chr3	196127406	rs13089205	A	G	164.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.022;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:178,15,0
chr3	196130005	rs6799210	A	G	322.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.862;SOR=0.446;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:331,0,316
chr3	196134294	.	TA	T	407.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DP=33;ExcessHet=6.9897;FS=0.000;MQ=59.69;MQRankSum=-1.043e+00;QD=5.74;ReadPosRankSum=-1.284e+00;SOR=0.616;VQSLOD=0.087;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,7:33:99:125,0,273
chr3	196158332	rs7374260	T	C	926.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=3.07;SOR=0.610;VQSLOD=22.30;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:109,0,101
chr3	196158468	rs10532490	TCC	T	3243.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=67;ExcessHet=3.9794;FS=4.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=0.761;SOR=0.404;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,44:67:99:1754,0,911
chr3	196199204	rs3796129	G	T	8432.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.056e+00;DB;DP=122;ExcessHet=3.9794;FS=0.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=0.205;SOR=0.629;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,60:122:99:1740,0,1804
chr3	196201914	rs13098146	G	A	582.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=0.712;SOR=1.329;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:67:145,0,67
chr3	196210590	rs7643192	A	G	1496.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131e+00;DB;DP=25;ExcessHet=3.9794;FS=1.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=1.43;SOR=1.204;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:346,0,381
chr3	196210808	rs7646174	T	C	1968.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=32;ExcessHet=3.9794;FS=3.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=2.36;SOR=1.071;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:472,0,337
chr3	196210894	rs7646273	T	C	341.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.99;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,150
chr3	196215352	rs34023868	C	CA	282.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=-2.820e-01;SOR=4.332;VQSLOD=2.84;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:35:88,0,35
chr3	196215451	rs62798260	CA	C	2271.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=40;ExcessHet=3.9794;FS=3.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=1.19;SOR=1.074;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,22:40:99:532,0,385
chr3	196215660	rs11185543	G	A	1706.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=-1.006e+00;SOR=0.812;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:325,0,332
chr3	196281208	rs9311	T	C	4143.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-02;DB;DP=103;ExcessHet=6.9897;FS=3.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.477;SOR=0.781;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,41:103:99:1008,0,1638
chr3	196288493	rs140815446	T	TA	121.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.9794;FS=3.590;MQ=60.00;MQRankSum=0.00;QD=7.58;ReadPosRankSum=0.00;SOR=0.116;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:58:58,0,85
chr3	196294104	rs9842616	C	G	5971.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=1.371;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1599,153,0
chr3	196304134	rs7640095	T	G	421.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.75;SOR=4.804;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr3	196304836	rs11306913	AT	A	424.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=2.19;SOR=2.636;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:62:62,0,86
chr3	196304917	.	C	CTTTTTTTTTTTG	323.61	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.00;SOR=2.584;VQSLOD=4.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:3:45,3,0
chr3	196381139	rs73221637	G	A	335.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:58:58,0,92
chr3	196386588	rs368419428	C	G	3798.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.722e+00;DB;DP=255;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.90;ReadPosRankSum=-1.065e+00;SOR=0.691;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,149:255:99:3807,0,2767
chr3	196386964	rs1798631	C	G	23893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=241;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=0.710;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,241:241:99:7968,724,0
chr3	196388099	rs62623661	G	C	4564.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=164;ExcessHet=3.9794;FS=14.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.060;SOR=0.948;VQSLOD=13.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,81:164:99:2344,0,2222
chr3	196435138	rs9843349	A	G	79.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.31;SOR=2.303;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr3	196435331	rs55901490	CAG	C	1788.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.582;DB;DP=26;ExcessHet=6.9897;FS=3.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=0.453;SOR=0.346;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,16:26:99:642,0,364
chr3	196435534	rs6776064	T	C	1981.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064e+00;DB;DP=46;ExcessHet=6.9897;FS=2.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=-4.540e-01;SOR=0.475;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,26:46:99:664,0,553
chr3	196443803	rs1906044	T	C	3770.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.520e-01;DB;DP=55;ExcessHet=3.9794;FS=1.045;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=0.580;SOR=0.806;VQSLOD=6.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,24:55:99:500,0,725
chr3	196443826	rs1906045	A	G	2487.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.846e+00;DB;DP=47;ExcessHet=6.9897;FS=0.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.131;SOR=0.760;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:449,0,656
chr3	196443996	rs56196731	G	C	206.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.59;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-4.640e-01;SOR=1.609;VQSLOD=3.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:71,0,73
chr3	196448103	rs9864896	C	T	1757.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460e-01;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-3.910e-01;SOR=0.751;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:449,0,360
chr3	196453427	rs1976847	C	A	1383.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051e+00;DB;DP=23;ExcessHet=6.9897;FS=3.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-6.360e-01;SOR=1.245;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:292,0,372
chr3	196453467	rs1568603	A	C	1764.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=28;ExcessHet=6.9897;FS=0.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-8.430e-01;SOR=0.812;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:311,0,562
chr3	196453654	rs12637375	C	A	854.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.586;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:144,0,184
chr3	196460579	.	G	A	519.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=31;ExcessHet=3.0103;FS=1.489;MQ=60.00;MQRankSum=0.00;QD=16.75;ReadPosRankSum=0.690;SOR=1.292;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:528,0,234
chr3	196533671	rs35013100	G	A	3445.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=125;ExcessHet=3.9794;FS=3.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=1.56;SOR=0.954;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,59:125:99:1587,0,1769
chr3	196541252	rs13078303	C	T	372.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.068;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.11;SOR=0.420;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	196541580	rs11185455	G	A	5824.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.67;SOR=2.060;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1619,141,0
chr3	196547446	rs2084382	G	C	1667.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=0.303;SOR=0.625;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,32:52:99:898,0,515
chr3	196547538	rs2166799	G	A	675.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=14;ExcessHet=6.9897;FS=3.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-1.550e-01;SOR=0.160;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:207,0,290
chr3	196554020	rs2084386	C	T	785.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.59;SOR=5.994;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr3	196613683	rs150375675	A	AG	343.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.209;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=-4.030e-01;SOR=1.473;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,11:17:99:352,0,174
chr3	196626689	rs9842002	G	A	174.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.70;ReadPosRankSum=0.389;SOR=0.693;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:183,0,618
chr3	196627088	rs9825635	A	G	982.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=27;ExcessHet=3.9794;FS=1.160;MQ=59.70;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=1.22;SOR=0.444;VQSLOD=5.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:493,0,430
chr3	196627335	rs6764463	T	C	928.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.054;DB;DP=45;ExcessHet=3.9794;FS=0.785;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.07;ReadPosRankSum=0.422;SOR=0.830;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,13:45:99:289,0,847
chr3	196627356	rs9810317	C	T	123.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=31;ExcessHet=3.0103;FS=2.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.98;ReadPosRankSum=1.02;SOR=1.911;VQSLOD=21.38;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,5:31:99:0|1:196627356_C_T:132,0,1484:196627356
chr3	196627361	rs6772870	G	A	606.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=30;ExcessHet=3.9794;FS=0.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.97;ReadPosRankSum=1.11;SOR=0.852;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,5:30:99:0|1:196627356_C_T:132,0,1484:196627356
chr3	196654507	.	T	TA	320.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580e-01;DP=19;ExcessHet=6.9897;FS=5.324;MQ=60.00;MQRankSum=0.00;QD=6.29;ReadPosRankSum=0.746;SOR=0.162;VQSLOD=4.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,6:19:67:67,0,177
chr3	196656772	rs1602	G	A	1508.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DB;DP=15;ExcessHet=3.0103;FS=2.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=1.40;SOR=0.310;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:283,0,189
chr3	196656858	rs59263562	T	G	392.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.96;ReadPosRankSum=-2.100e-01;SOR=3.442;VQSLOD=18.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:196656858_T_G:90,6,0:196656858
chr3	196656860	.	A	AAT	77.46	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=2.303;VQSLOD=6.03;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:196656858_T_G:90,6,0:196656858
chr3	196657547	rs1147245	C	T	921.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=0.366;SOR=0.776;VQSLOD=6.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:57:57,0,175
chr3	196657670	rs63736860	CT	C	2752.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.410e-01;DB;DP=42;ExcessHet=3.0103;FS=0.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=-1.178e+00;SOR=0.540;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,13:42:99:264,0,710
chr3	196666059	rs553783	A	G	3686.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DB;DP=35;ExcessHet=3.0103;FS=1.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.34;ReadPosRankSum=-7.130e-01;SOR=1.253;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,23:35:99:662,0,272
chr3	196669488	rs3214858	C	CA	12353.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.91;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.20;ReadPosRankSum=0.300;SOR=0.703;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:80,55:135:99:1856,0,2785
chr3	196669912	rs335824	C	T	6635.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.13;DB;DP=94;ExcessHet=3.9794;FS=2.001;MQ=59.97;MQRankSum=0.940;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=-5.390e-01;SOR=0.876;VQSLOD=2.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,43:94:99:1285,0,1500
chr3	196670092	rs1054278	C	A	791.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.96;ReadPosRankSum=-1.068e+00;SOR=3.258;VQSLOD=17.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:196670092_C_A:159,0,263:196670092
chr3	196670094	rs61378737	G	GAC	791.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.65;ReadPosRankSum=-1.068e+00;SOR=2.948;VQSLOD=4.59;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:196670092_C_A:159,0,263:196670092
chr3	196674518	rs1147238	A	G	4979.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=138;ExcessHet=6.9897;FS=1.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=-5.830e-01;SOR=0.573;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,57:138:99:1467,0,2126
chr3	196674916	rs1147240	A	C	8103.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;DB;DP=262;ExcessHet=6.9897;FS=0.526;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=0.276;SOR=0.739;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,110:262:99:2496,0,3579
chr3	196674972	rs574365	C	T	17513.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060e+00;DB;DP=237;ExcessHet=3.9794;FS=1.134;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=1.66;SOR=0.597;VQSLOD=6.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:140,97:237:99:0|1:196674972_C_T:3682,0,6877:196674972
chr3	196674973	rs573708	T	C	17513.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=235;ExcessHet=3.9794;FS=0.536;MQ=59.98;MQRankSum=0.00;QD=25.79;ReadPosRankSum=1.23;SOR=0.618;VQSLOD=5.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:137,98:235:99:0|1:196674972_C_T:3682,0,6877:196674972
chr3	196679055	rs471195	A	G	593.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=6;ExcessHet=3.9794;FS=2.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=-2.170e-01;SOR=1.358;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:163,0,22
chr3	196737295	rs1814917	A	G	3081.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=1.73;SOR=0.798;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,26:34:99:800,0,200
chr3	196749798	rs2288766	T	G	2806.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=42;ExcessHet=3.9794;FS=5.067;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=0.523;SOR=1.231;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:617,0,469
chr3	196750016	rs2288765	A	G	3891.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.490;DB;DP=65;ExcessHet=3.9794;FS=0.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=1.44;SOR=0.771;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,27:65:99:632,0,931
chr3	196750207	rs890490	A	G	610.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.76;ReadPosRankSum=1.01;SOR=2.303;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:137,0,99
chr3	196750841	rs2280294	C	A	2297.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170e-01;DB;DP=79;ExcessHet=3.9794;FS=2.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.794;SOR=0.949;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,47:79:99:1160,0,701
chr3	196751474	rs2280296	C	T	1889.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.154;SOR=0.501;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:290,0,214
chr3	196753355	rs4916598	T	C	1999.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544e+00;DB;DP=55;ExcessHet=3.9794;FS=3.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.094;SOR=1.695;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,32:55:99:1126,0,766
chr3	196754819	rs2276788	C	G	2435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.464e+00;DB;DP=68;ExcessHet=3.9794;FS=18.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.247;SOR=0.142;VQSLOD=12.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,40:68:99:961,0,800
chr3	196754856	rs12637442	C	A	1446.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.028e+00;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=0.203;SOR=0.483;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:558,0,731
chr3	196756140	rs13316391	T	C	69.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=0.693;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr3	196756171	rs4916599	C	T	72.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:78,0,33
chr3	196771245	rs4916600	G	A	235.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.920e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=2.82;SOR=1.022;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr3	196771295	rs45453796	A	C	164.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.34;SOR=0.693;VQSLOD=18.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:181,18,0
chr3	196778438	rs7629533	C	T	821.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=95;ExcessHet=3.0103;FS=2.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=-8.860e-01;SOR=0.670;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,36:95:99:830,0,1385
chr3	196793466	rs140259336	T	TA	270.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.290e-01;DB;DP=27;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;QD=10.01;ReadPosRankSum=-6.550e-01;SOR=0.338;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,13:27:99:279,0,319
chr3	196802475	rs61486600	T	C	73.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.61;SOR=1.179;VQSLOD=18.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr3	196803694	rs28677880	A	C	222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-6.150e-01;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:231,0,245
chr3	196807928	rs35430440	A	C	1476.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=122;ExcessHet=3.0103;FS=0.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-6.100e-01;SOR=0.584;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,58:122:99:1485,0,1384
chr3	196857178	rs12497108	C	T	63.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:72,0,30
chr3	196869518	rs9866058	T	C	126.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=1.22;SOR=0.765;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:135,0,231
chr3	196869688	rs7628652	A	G	5418.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=0.812;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1507,150,0
chr3	196869820	rs9866550	T	A	232.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=0.676;SOR=1.609;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:241,0,239
chr3	197020630	rs364644	G	A	373.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.101;SOR=0.562;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,9:24:99:221,0,397
chr3	197020718	rs434681	T	C	838.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=34;ExcessHet=3.9794;FS=3.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.382;SOR=0.330;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:462,0,326
chr3	197020780	rs3836429	G	GA	709.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750e-01;DB;DP=21;ExcessHet=3.9794;FS=6.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.224;SOR=0.154;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,14:21:99:363,0,155
chr3	197020871	rs450891	G	A	368.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=7;ExcessHet=3.9794;FS=3.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.40;SOR=0.209;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:18:192,0,18
chr3	197239266	rs9325394	C	G	3248.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-01;DB;DP=104;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=1.97;SOR=0.687;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,52:104:99:1372,0,1370
chr3	197240719	rs2686068	T	C	1096.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=2.765;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:576,51,0
chr3	197249215	rs62282547	C	T	402.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.175;SOR=0.784;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:180,0,215
chr3	197349339	rs200253376	G	A	143.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=46.40;MQRankSum=-1.383e+00;QD=23.97;ReadPosRankSum=-1.383e+00;SOR=1.329;VQSLOD=-3.225e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr3	197361995	rs56411292	A	G	427.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=121;ExcessHet=3.0103;FS=6.071;MQ=57.25;MQRankSum=-7.700e+00;QD=3.53;ReadPosRankSum=-9.680e-01;SOR=1.426;VQSLOD=-4.546e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:98,23:121:99:436,0,2634
chr3	197362184	rs9867990	C	T	3637.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.002e+00;DB;DP=54;ExcessHet=6.9897;FS=2.495;MQ=48.71;MQRankSum=-3.469e+00;QD=14.10;ReadPosRankSum=-1.030e+00;SOR=0.874;VQSLOD=-3.309e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,14:54:99:0|1:197362184_C_T:458,0,2651:197362184
chr3	197362187	rs9867993	C	T	3578.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.521e+00;DB;DP=51;ExcessHet=6.9897;FS=1.828;MQ=48.06;MQRankSum=-4.150e+00;QD=14.32;ReadPosRankSum=-1.016e+00;SOR=0.854;VQSLOD=-3.631e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,13:51:99:0|1:197362184_C_T:425,0,2654:197362184
chr3	197377210	rs112224692	C	T	337.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=41.39;MQRankSum=-2.342e+00;QD=6.63;ReadPosRankSum=1.75;SOR=0.580;VQSLOD=-4.835e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,2:14:30:30,0,311
chr3	197377246	rs12497595	G	A	248.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=42.11;MQRankSum=-1.498e+00;QD=6.53;ReadPosRankSum=0.510;SOR=0.795;VQSLOD=-4.689e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,2:15:25:25,0,360
chr3	197401779	rs372329370	TA	T	150.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=59.88;MQRankSum=0.00;QD=7.19;ReadPosRankSum=-1.981e+00;SOR=0.784;VQSLOD=4.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:31:55,0,31
chr3	197477197	rs6806100	A	C	412.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=2.670;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:203,18,0
chr3	197482760	rs13068986	C	G	5360.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=56.89;POSITIVE_TRAIN_SITE;QD=31.17;SOR=0.815;VQSLOD=3.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1964,189,0
chr3	197483279	rs6794391	A	G	3890.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.49;SOR=2.240;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1518,141,0
chr3	197490285	.	CA	C	294.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DP=43;ExcessHet=6.9897;FS=2.414;MQ=59.92;MQRankSum=0.00;QD=2.34;ReadPosRankSum=0.546;SOR=0.917;VQSLOD=5.21;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,7:43:29:1|0:197490280_T_C:29,0,772:197490280
chr3	197495334	rs3205525	G	A	6341.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=1.670;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2001,189,0
chr3	197496984	rs1708460	A	G	2028.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.21;SOR=3.300;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:495,42,0
chr3	197500222	.	A	G	214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.897;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.60;ReadPosRankSum=-8.470e-01;SOR=1.179;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:223,0,253
chr3	197500394	rs35962724	T	TTTTG	6377.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.84;SOR=0.707;VQSLOD=3.32;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,45:45:99:2054,141,0
chr3	197500668	rs1679661	T	C	299.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=1.179;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr3	197500791	rs7615204	A	T	1421.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.39;SOR=4.804;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:506,36,0
chr3	197544200	rs55896070	C	CGTGTGTGTGTGT	2760.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.19;SOR=3.007;VQSLOD=4.77;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:65:1|1:197544200_C_CGTGTGTGTGTGT:860,65,0:197544200
chr3	197544201	rs55705919	A	ATTTTGTGTGTGTGTGCG	2761.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.43;SOR=5.590;VQSLOD=4.13;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:66:1|1:197544200_C_CGTGTGTGTGTGT:860,66,0:197544200
chr3	197557635	rs501101	C	T	6272.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=0.944;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1481,144,0
chr3	197562369	rs1679659	A	T	248.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.17;NEGATIVE_TRAIN_SITE;QD=17.76;SOR=2.985;VQSLOD=-1.541e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr3	197574549	.	G	GTGCAAAAGTAATTGCAGTTTCTCCCATCACTTTCAATGGCAGAAACTGCAATTACTTT	1665.71	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.73;SOR=1.473;VQSLOD=3.28;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:34:1|1:197574549_G_GTGCAAAAGTAATTGCAGTTTCTCCCATCACTTTCAATGGCAGAAACTGCAATTACTTT:536,34,0:197574549
chr3	197574936	rs2306439	G	C	5158.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.994;DB;DP=90;ExcessHet=3.9794;FS=4.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=0.867;SOR=0.482;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2536,267,0
chr3	197580938	rs9325410	T	C	531.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.00;SOR=5.283;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr3	197581147	rs9863587	A	G	6444.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=81;ExcessHet=3.9794;FS=6.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=1.76;SOR=1.075;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2698,243,0
chr3	197665188	rs71870898	CA	C	127.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.64;ReadPosRankSum=0.949;SOR=0.180;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,37
chr3	197846636	rs1815120	C	A	5272.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.227;DB;DP=86;ExcessHet=3.9794;FS=4.319;MQ=55.81;MQRankSum=-3.405e+00;NEGATIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=1.65;SOR=0.480;VQSLOD=-2.371e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1014,0,1034
chr3	197847274	rs9837473	G	A	6806.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=146;ExcessHet=3.9794;FS=1.228;MQ=59.49;MQRankSum=-5.890e-01;QD=17.91;ReadPosRankSum=-2.700e-02;SOR=0.701;VQSLOD=-4.540e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,73:146:99:1939,0,1851
chr3	197847604	rs4081091	C	T	4113.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=103;ExcessHet=3.9794;FS=2.655;MQ=53.42;MQRankSum=1.41;NEGATIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-1.796e+00;SOR=0.545;VQSLOD=-3.127e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,44:103:99:1022,0,1655
chr3	197883965	.	A	AT	151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=7;ExcessHet=3.9794;FS=0.000;MQ=39.05;MQRankSum=0.674;QD=11.63;ReadPosRankSum=0.484;SOR=0.836;VQSLOD=0.615;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:65:94,0,65
chr3	197896920	.	G	A	77.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=6;ExcessHet=3.9794;FS=0.000;MQ=50.53;MQRankSum=-1.834e+00;NEGATIVE_TRAIN_SITE;QD=5.17;ReadPosRankSum=0.431;SOR=0.260;VQSLOD=-3.329e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:33:33,0,141
chr4	53428	rs2859214	G	A	80202.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=845;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.96;SOR=2.571;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,845:845:99:29635,2533,0
chr4	53446	rs4970290	T	C	43.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.737e+00;DB;DP=655;ExcessHet=3.0103;FS=1.242;MQ=60.00;MQRankSum=0.00;QD=0.07;ReadPosRankSum=-1.450e-01;SOR=0.379;VQSLOD=20.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:590,65:655:52:52,0,18421
chr4	53498	rs2780407	A	C	31809.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.05;SOR=5.457;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,278:278:99:11409,836,0
chr4	53503	rs202187316	AG	A	520.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.776e+00;DB;DP=267;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=1.15;ReadPosRankSum=-1.391e+00;SOR=0.400;VQSLOD=6.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:238,29:267:99:365,0,8754
chr4	53546	.	G	A	213.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.80;DP=128;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=0.96;ReadPosRankSum=0.715;SOR=0.267;VQSLOD=20.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:118,10:128:42:42,0,4326
chr4	59566	rs6856925	C	A	890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.731e+00;DB;DP=322;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.44;ReadPosRankSum=1.05;SOR=0.598;VQSLOD=20.48;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:292,30:322:99:0|1:59566_C_A:378,0,17826:59566
chr4	59571	rs6835149	A	T	965.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.013e+00;DB;DP=300;ExcessHet=3.9794;FS=1.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=1.66;ReadPosRankSum=0.786;SOR=0.578;VQSLOD=22.24;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:270,30:300:99:0|1:59566_C_A:438,0,17239:59566
chr4	60210	rs3908749	G	A	1892.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.239e+00;DB;DP=287;ExcessHet=3.9794;FS=1.488;MQ=60.00;MQRankSum=0.00;QD=3.21;ReadPosRankSum=1.56;SOR=0.801;VQSLOD=20.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:261,26:287:27:27,0,8693
chr4	60303	rs3864127	G	A	6080.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293e+00;DB;DP=388;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.21;ReadPosRankSum=-2.070e-01;SOR=0.679;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:327,61:388:99:722,0,9071
chr4	60335	rs2780400	A	T	24369.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930e-01;DB;DP=380;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.26;ReadPosRankSum=0.395;SOR=0.667;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,308:380:99:8736,0,1040
chr4	60400	rs3864128	G	A	10530.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.343e+00;DB;DP=231;ExcessHet=6.9897;FS=0.606;MQ=60.00;MQRankSum=0.00;QD=16.53;ReadPosRankSum=-3.200e-01;SOR=0.589;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,157:231:99:4282,0,1799
chr4	60448	rs2780399	G	T	522.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521e+00;DB;DP=120;ExcessHet=6.9897;FS=2.032;MQ=60.00;MQRankSum=0.00;QD=1.56;ReadPosRankSum=1.75;SOR=0.909;VQSLOD=20.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:107,13:120:99:99,0,3478
chr4	60503	rs4021995	AT	A	396.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.500e-02;DB;DP=40;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.01;ReadPosRankSum=0.122;SOR=0.192;VQSLOD=5.44;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,12:40:99:220,0,611
chr4	60570	rs6599357	G	A	290.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.61;ReadPosRankSum=1.47;SOR=0.368;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:203,0,276
chr4	67500	rs6599363	A	C	445.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=14;ExcessHet=6.9897;FS=3.496;MQ=60.00;MQRankSum=0.00;QD=7.56;ReadPosRankSum=0.234;SOR=0.110;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:84:84,0,359
chr4	67547	rs4022006	C	T	434.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.22;ReadPosRankSum=-1.020e-01;SOR=0.125;VQSLOD=21.05;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,4:34:69:69,0,1043
chr4	67783	.	CT	C	5384.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900e-02;DP=368;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.31;ReadPosRankSum=0.522;SOR=0.685;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:299,48:368:99:211,0,7275
chr4	67846	rs7437270	C	A	1188.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.858e+00;DB;DP=215;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.95;ReadPosRankSum=-7.800e-02;SOR=0.741;VQSLOD=20.61;culprit=QD	GT:AD:DP:GQ:PL	0/1:191,24:215:99:186,0,6506
chr4	67857	rs6599364	C	A	3870.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.106e+00;DB;DP=193;ExcessHet=6.9897;FS=2.838;MQ=60.00;MQRankSum=0.00;QD=7.25;ReadPosRankSum=0.073;SOR=1.105;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:157,36:193:99:667,0,5409
chr4	67919	rs4022005	C	T	239.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.39;DB;DP=74;ExcessHet=3.9794;FS=2.469;MQ=60.00;MQRankSum=0.00;QD=1.47;ReadPosRankSum=1.17;SOR=0.184;VQSLOD=20.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:67,7:74:57:57,0,2341
chr4	67922	rs6827702	C	G	814.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.761e+00;DB;DP=67;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.83;ReadPosRankSum=0.608;SOR=0.678;VQSLOD=20.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:60,7:67:61:61,0,2400
chr4	85995	rs61336127	C	CA	24607.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=169;ExcessHet=3.0103;FS=0.000;MQ=55.07;QD=29.06;SOR=0.799;VQSLOD=4.26;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,169:169:99:1|1:85995_C_CA:7561,529,0:85995
chr4	86016	rs57253237	G	GC	26230.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MQ=54.16;QD=33.65;SOR=0.884;VQSLOD=4.18;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,181:181:99:1|1:85995_C_CA:8480,578,0:85995
chr4	86022	rs74490941	C	A	25186.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=53.89;QD=30.81;SOR=0.866;VQSLOD=1.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,175:175:99:1|1:85995_C_CA:7965,533,0:85995
chr4	86023	rs78362263	A	T	25186.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MQ=53.92;QD=29.70;SOR=0.874;VQSLOD=0.093;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,173:173:99:1|1:85995_C_CA:8010,536,0:85995
chr4	86024	rs77715101	G	A	25546.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=53.92;QD=28.36;SOR=0.874;VQSLOD=0.813;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,174:174:99:1|1:85995_C_CA:8055,539,0:85995
chr4	86031	rs367720730	CA	C	25771.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=53.86;QD=22.01;SOR=0.975;VQSLOD=2.91;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,175:175:99:1|1:85995_C_CA:8145,545,0:85995
chr4	86034	rs57594632	TC	T	25636.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=53.93;QD=26.48;SOR=0.972;VQSLOD=2.79;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,177:177:99:1|1:85995_C_CA:8100,542,0:85995
chr4	86040	rs17853557	G	T	25814.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=53.95;QD=34.52;SOR=0.989;VQSLOD=1.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,175:175:99:1|1:85995_C_CA:8100,542,0:85995
chr4	86042	rs17857099	A	G	25954.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=173;ExcessHet=3.0103;FS=0.000;MQ=53.90;QD=37.09;SOR=1.024;VQSLOD=0.080;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,173:173:99:1|1:85995_C_CA:8189,554,0:85995
chr4	86044	rs17857100	G	A	25369.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=178;ExcessHet=3.0103;FS=0.000;MQ=54.03;QD=27.87;SOR=1.006;VQSLOD=0.796;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,178:178:99:1|1:85995_C_CA:7964,539,0:85995
chr4	86101	rs58319295	G	GC	26891.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MQ=56.55;QD=32.63;SOR=0.699;VQSLOD=4.71;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,231:231:99:8651,698,0
chr4	86738	rs2353625	A	G	27488.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.122;DB;DP=290;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=1.55;SOR=0.253;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,290:290:99:9642,866,0
chr4	86797	rs180742908	A	G	3801.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=284;ExcessHet=3.0103;FS=0.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=1.29;SOR=0.723;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:140,144:284:99:3810,0,3713
chr4	87277	rs2006764	G	C	24748.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.61;SOR=1.212;VQSLOD=4.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,248:248:99:7755,742,0
chr4	87313	rs60154095	G	GA	23372.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=204;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.42;SOR=1.517;VQSLOD=5.48;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,204:204:99:7566,613,0
chr4	135694	rs12504142	G	A	3203.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.95;SOR=3.638;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:853,66,0
chr4	331693	rs5855672	G	GC	33701.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=302;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=27.66;SOR=1.092;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,302:302:99:11218,908,0
chr4	337513	.	C	CA	424.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DP=20;ExcessHet=3.9794;FS=1.563;MQ=55.37;MQRankSum=0.149;QD=9.24;ReadPosRankSum=-8.190e-01;SOR=1.211;VQSLOD=0.051;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:20:46:46,0,187
chr4	376720	.	TTATTG	T	300.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DP=17;ExcessHet=3.0103;FS=0.000;MQ=58.72;MQRankSum=1.12;QD=17.66;ReadPosRankSum=1.25;SOR=0.593;VQSLOD=0.508;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:309,0,554
chr4	499421	.	CA	C	172.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.51;ReadPosRankSum=0.674;SOR=1.112;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:34:37,0,34
chr4	500500	rs17721401	T	C	418.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=0.630;SOR=0.722;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,17:23:99:427,0,105
chr4	500631	rs4690182	A	G	9420.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=0.920;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2416,246,0
chr4	501445	rs199557993	AT	A	97.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=1.65;SOR=1.022;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:66:106,0,66
chr4	501473	rs7659929	C	A	54.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.05;ReadPosRankSum=-8.420e-01;SOR=0.307;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,158
chr4	521068	rs7697650	A	T	3977.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.188;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1402,132,0
chr4	648643	rs10902758	G	A	10389.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.11;SOR=1.037;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3054,311,0
chr4	664028	.	AT	A	622.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DP=20;ExcessHet=3.9794;FS=5.862;MQ=59.91;MQRankSum=0.00;QD=9.72;ReadPosRankSum=0.437;SOR=0.173;VQSLOD=4.85;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,10:20:81:175,0,81
chr4	666385	.	AT	A,ATT	817.76	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.510e-01;DP=21;ExcessHet=3.0103;FS=10.054;MQ=60.00;MQRankSum=0.00;QD=13.86;ReadPosRankSum=0.210;SOR=2.532;VQSLOD=2.44;culprit=FS	GT:AD:DP:GQ:PL	1/2:4,9,8:21:74:187,74,177,88,0,199
chr4	759640	rs6829951	G	A	529.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DB;DP=13;ExcessHet=3.9794;FS=2.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.446;SOR=0.148;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:75:299,0,75
chr4	759733	rs6816483	T	C	3687.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=54;ExcessHet=3.9794;FS=6.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=0.799;SOR=1.283;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,27:54:99:657,0,636
chr4	760258	rs7336	G	T	225.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=1.38;SOR=1.863;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr4	774574	rs6840352	A	G	135.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=-3.190e-01;SOR=0.307;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:99,0,29
chr4	780286	rs10794536	C	G	5593.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DB;DP=66;ExcessHet=3.0103;FS=2.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=-5.840e-01;SOR=1.044;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:613,0,1026
chr4	780707	rs6816792	G	T	322.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DB;DP=13;ExcessHet=3.9794;FS=1.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.327;SOR=1.085;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:780707_G_T:189,0,341:780707
chr4	780717	rs6816802	G	A	338.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=13;ExcessHet=3.9794;FS=3.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.069;SOR=1.911;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:780707_G_T:208,0,341:780707
chr4	786508	rs2306250	T	C	2453.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=26;ExcessHet=3.9794;FS=8.141;MQ=60.00;MQRankSum=0.00;QD=27.27;ReadPosRankSum=0.904;SOR=2.066;VQSLOD=18.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:568,0,226
chr4	818440	rs2276906	G	A	20423.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.653e+00;DB;DP=333;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-7.700e-02;SOR=0.673;VQSLOD=6.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:168,165:333:99:4339,0,4401
chr4	843508	rs1134921	C	T	4474.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.896e+00;DB;DP=366;ExcessHet=3.0103;FS=8.453;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.243;SOR=0.911;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:179,187:366:99:4483,0,4574
chr4	843695	rs8093	A	G	8782.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.392e+00;DB;DP=194;ExcessHet=6.9897;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.275;SOR=0.521;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,86:194:99:2323,0,3203
chr4	844035	rs2306241	C	T	910.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=26;ExcessHet=6.9897;FS=4.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.17;SOR=1.565;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,9:26:99:260,0,455
chr4	845772	rs10031922	T	C	3559.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.96;SOR=2.728;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1409,135,0
chr4	845841	rs17165087	C	T	721.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.275;SOR=1.085;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:388,0,241
chr4	858866	rs1026739	G	A	2442.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610e-01;DB;DP=36;ExcessHet=6.9897;FS=1.441;MQ=60.00;MQRankSum=0.00;QD=18.37;ReadPosRankSum=-9.100e-02;SOR=0.865;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,14:36:99:0|1:858866_G_A:519,0,896:858866
chr4	858874	rs3214922	T	TC	2397.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DB;DP=37;ExcessHet=6.9897;FS=1.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.50;ReadPosRankSum=1.22;SOR=0.833;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,14:37:99:0|1:858866_G_A:519,0,909:858866
chr4	858941	rs1026738	T	C	5801.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=1.045;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1734,162,0
chr4	859269	rs201371050	TGAG	T	1372.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e-01;DB;DP=29;ExcessHet=6.9897;FS=2.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=0.637;SOR=1.371;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,12:29:99:444,0,825
chr4	859298	rs3775135	A	G	925.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=0.00;SOR=0.915;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:234,0,372
chr4	860023	rs57354360	G	GA	411.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:12:99:112,0,263
chr4	860146	rs2306248	A	G	1986.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.430e-01;DB;DP=54;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=1.60;SOR=0.682;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,20:54:99:505,0,930
chr4	860192	rs1064207	A	G	3079.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.500e-02;DB;DP=84;ExcessHet=6.9897;FS=5.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.069;SOR=1.015;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,38:84:99:952,0,1209
chr4	862502	rs2306244	T	C	1974.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570e-01;DB;DP=46;ExcessHet=6.9897;FS=0.639;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-4.640e-01;SOR=0.811;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,21:46:99:540,0,661
chr4	871675	rs1564280	A	G	4875.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=27;ExcessHet=3.0103;FS=1.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.34;ReadPosRankSum=0.316;SOR=1.624;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:468,0,358
chr4	875671	rs45486093	T	C	5262.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.391e+00;DB;DP=138;ExcessHet=6.9897;FS=12.252;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=-2.150e-01;SOR=0.323;VQSLOD=3.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,70:138:99:2097,0,2010
chr4	876318	rs3736087	C	T	2014.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.570e-01;DB;DP=48;ExcessHet=6.9897;FS=1.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=-1.060e-01;SOR=0.473;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,29:48:99:809,0,477
chr4	877625	rs3736084	G	A	282.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=-6.740e-01;SOR=0.859;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,68
chr4	877709	rs3736083	T	C	400.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.233;SOR=0.874;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:248,0,175
chr4	882845	rs9328759	C	T	1840.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=0.198;SOR=0.788;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,12:18:99:0|1:882845_C_T:473,0,385:882845
chr4	882849	rs9328760	C	T	1753.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.24;ReadPosRankSum=0.430;SOR=0.746;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,10:16:99:0|1:882845_C_T:438,0,388:882845
chr4	887513	rs33951409	AC	A	2476.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DB;DP=48;ExcessHet=3.9794;FS=0.636;MQ=60.00;MQRankSum=0.00;QD=16.40;ReadPosRankSum=0.942;SOR=0.617;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,22:48:99:486,0,599
chr4	892082	rs3830209	TGCA	T	1543.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.86;ReadPosRankSum=0.213;SOR=0.758;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,8:27:99:279,0,930
chr4	906131	rs11248057	C	G	1302.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=53;ExcessHet=6.9897;FS=1.025;MQ=60.00;MQRankSum=0.00;QD=12.90;ReadPosRankSum=0.749;SOR=0.495;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:628,0,887
chr4	906647	rs2279178	A	G	7129.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.930e-01;DB;DP=70;ExcessHet=3.0103;FS=1.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=-1.442e+00;SOR=0.573;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,37:70:99:881,0,782
chr4	941518	rs2290402	C	T	4341.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.707e+00;DB;DP=84;ExcessHet=6.9897;FS=3.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-4.270e-01;SOR=0.462;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1324,0,1118
chr4	946226	rs11552301	T	C	3208.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.070e-01;DB;DP=62;ExcessHet=3.9794;FS=8.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=-7.610e-01;SOR=1.336;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,30:62:99:695,0,723
chr4	946262	.	CTGTGTG	C,CTG	1484.21	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.40;SOR=3.086;VQSLOD=5.24;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,6,5:11:99:462,139,105,171,0,138
chr4	946974	rs2290405	G	A	13483.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.946;DB;DP=254;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.589;SOR=0.672;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,137:254:99:3333,0,2677
chr4	949893	rs28440052	C	A	1824.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=26;ExcessHet=3.9794;FS=4.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.346;SOR=0.298;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:452,0,384
chr4	951947	rs34311866	T	C	2105.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e-01;DB;DP=182;ExcessHet=3.0103;FS=2.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.224;SOR=0.514;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,87:182:99:2114,0,2299
chr4	954277	rs3733347	T	C	4829.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DB;DP=70;ExcessHet=3.0103;FS=6.030;MQ=60.00;MQRankSum=0.00;QD=28.58;ReadPosRankSum=0.564;SOR=1.371;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,28:70:99:691,0,1213
chr4	954741	rs56039006	C	G	8729.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486e+00;DB;DP=168;ExcessHet=6.9897;FS=3.340;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.914;SOR=0.486;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,95:168:99:2571,0,2085
chr4	959491	rs4690325	A	G	1465.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.0103;FS=5.366;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=1.24;SOR=3.442;VQSLOD=16.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:94:232,0,94
chr4	960081	rs4690324	G	A	14370.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=171;ExcessHet=3.0103;FS=0.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=0.437;SOR=0.577;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,95:171:99:2741,0,1944
chr4	980971	rs10794537	T	G	2535.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=36;ExcessHet=3.0103;FS=2.314;MQ=60.00;MQRankSum=0.00;QD=24.62;ReadPosRankSum=-4.440e-01;SOR=1.179;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:461,0,286
chr4	994154	rs3755957	C	T	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=7;ExcessHet=3.0103;FS=8.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=-6.520e-01;SOR=3.236;VQSLOD=14.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:141,0,99
chr4	994452	rs3755954	C	T	1264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e+00;DB;DP=82;ExcessHet=3.0103;FS=4.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-5.130e-01;SOR=0.340;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,48:82:99:1273,0,992
chr4	995035	rs370414350	TGCACCCCTATCACCCAGGCC	T	313.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=0.816;SOR=0.941;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,3:11:96:96,0,1403
chr4	996998	rs113289555	G	T	420.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.840e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.53;ReadPosRankSum=1.18;SOR=0.730;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:84:251,0,84
chr4	1006076	rs35719905	T	TA	1074.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.432;DB;DP=25;ExcessHet=1.5490;FS=2.235;MQ=60.00;MQRankSum=0.00;QD=20.28;ReadPosRankSum=-1.272e+00;SOR=1.609;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:839,75,0
chr4	1006200	rs34627176	G	A	4424.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=200;ExcessHet=3.9794;FS=2.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-5.410e-01;SOR=0.885;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,101:200:99:2355,0,2268
chr4	1006333	rs4647942	G	A	4803.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.961e+00;DB;DP=130;ExcessHet=6.9897;FS=6.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=1.08;SOR=0.453;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,66:130:99:1582,0,1767
chr4	1015844	rs3796624	C	G	145.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=2.52;SOR=0.260;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:61:61,0,220
chr4	1016480	rs11723654	A	G	305.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=1.15;SOR=0.593;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:79,0,28
chr4	1018705	rs4647930	C	A	4897.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.110e-01;DB;DP=134;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-7.900e-01;SOR=0.657;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,56:134:99:1359,0,2062
chr4	1019312	rs4647939	G	A	3305.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430e+00;DB;DP=45;ExcessHet=3.9794;FS=4.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.96;ReadPosRankSum=0.672;SOR=2.569;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,14:45:99:416,0,1146
chr4	1020882	rs7664212	T	G	239.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=0.524;SOR=1.402;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:1020882_T_G:75,0,235:1020882
chr4	1020891	rs7680381	G	A	239.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.60;ReadPosRankSum=0.524;SOR=1.402;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:1020882_T_G:75,0,235:1020882
chr4	1050437	rs7680608	C	G	1344.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=15;ExcessHet=3.0103;FS=5.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.28;ReadPosRankSum=0.288;SOR=0.158;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:555,45,0
chr4	1050521	rs7679432	G	A	733.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=0.564;SOR=0.874;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:194,0,257
chr4	1050653	rs3816474	G	A	2265.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.420e-01;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=0.608;SOR=0.745;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,23:32:99:726,0,261
chr4	1050849	rs10003009	G	A	2929.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=50;ExcessHet=3.9794;FS=2.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=0.942;SOR=1.030;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,21:50:99:0|1:1050849_G_A:775,0,1406:1050849
chr4	1050850	rs62879260	T	C	2929.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=48;ExcessHet=3.9794;FS=2.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=0.968;SOR=1.067;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,20:48:99:0|1:1050849_G_A:775,0,1406:1050849
chr4	1050909	rs9992925	A	T	725.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DB;DP=23;ExcessHet=3.9794;FS=5.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.800;SOR=2.140;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,6:23:99:169,0,548
chr4	1052009	rs13114658	A	G	369.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=0.071;SOR=1.765;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:378,0,128
chr4	1052078	rs2290410	A	T	1590.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.329;DB;DP=36;ExcessHet=3.0103;FS=6.967;MQ=59.63;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-1.019e+00;SOR=0.175;VQSLOD=3.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:539,0,466
chr4	1052125	rs11724371	T	C	4842.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=1.493;VQSLOD=19.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2572,204,0
chr4	1052166	rs2248083	A	C	4292.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=94;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=-3.340e-01;SOR=0.646;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,43:94:99:1124,0,1179
chr4	1052206	rs2045069	T	C	8968.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=112;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=0.797;VQSLOD=19.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,112:112:99:1|1:1052206_T_C:5045,343,0:1052206
chr4	1052212	rs2045068	G	A	8855.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.11;SOR=0.798;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,111:111:99:1|1:1052206_T_C:4977,337,0:1052206
chr4	1052355	rs2045067	C	T	1418.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=0.142;SOR=0.622;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:381,0,300
chr4	1052401	rs2045066	C	T	754.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=1.72;SOR=2.226;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:137,0,114
chr4	1066769	rs17728127	C	T	1973.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.250;DB;DP=156;ExcessHet=3.0103;FS=8.208;MQ=59.96;MQRankSum=-9.620e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=1.61;SOR=0.430;VQSLOD=0.428;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:76,80:156:99:1982,0,1932
chr4	1067249	rs2290409	T	C	949.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.310e-01;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-2.310e-01;SOR=0.728;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:254,0,387
chr4	1067267	rs2290408	G	T	1790.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=0.186;SOR=0.867;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:349,0,477
chr4	1067638	rs6852155	T	G	2925.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.59;ReadPosRankSum=1.88;SOR=0.791;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:587,0,449
chr4	1073760	rs1466214	C	T	610.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=-3.660e-01;SOR=0.880;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:279,0,143
chr4	1084723	rs658846	G	C	2256.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=26;ExcessHet=3.9794;FS=0.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=1.17;SOR=0.862;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:429,0,349
chr4	1087168	rs61648964	A	AAT	3834.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320e+00;DB;DP=53;ExcessHet=3.9794;FS=2.364;MQ=60.00;MQRankSum=0.00;QD=23.38;ReadPosRankSum=0.404;SOR=0.931;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,18:53:99:0|1:1087168_A_AAT:641,0,2682:1087168
chr4	1087171	rs59985183	G	T	3831.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746e+00;DB;DP=57;ExcessHet=3.9794;FS=2.302;MQ=60.00;MQRankSum=0.00;QD=22.54;ReadPosRankSum=0.910;SOR=0.969;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,18:57:99:0|1:1087168_A_AAT:638,0,2704:1087168
chr4	1087265	rs1670534	T	C	4645.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.123e+00;DB;DP=100;ExcessHet=3.9794;FS=11.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-4.470e-01;SOR=0.390;VQSLOD=18.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,29:100:99:601,0,1872
chr4	1087327	rs138488801	G	GCTGCCCAGGCTGGAGCCAGCC	7468.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DB;DP=105;ExcessHet=3.9794;FS=8.523;MQ=60.00;MQRankSum=0.00;QD=23.71;ReadPosRankSum=-1.021e+00;SOR=1.096;VQSLOD=3.89;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,38:105:99:0|1:1087327_G_GCTGCCCAGGCTGGAGCCAGCC:1474,0,3932:1087327
chr4	1087329	rs118112880	C	T	7747.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DB;DP=103;ExcessHet=3.9794;FS=3.701;MQ=60.00;MQRankSum=0.00;QD=25.07;ReadPosRankSum=-2.050e-01;SOR=0.895;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:68,35:103:99:0|1:1087327_G_GCTGCCCAGGCTGGAGCCAGCC:1538,0,3922:1087327
chr4	1087338	rs11725984	C	T	6454.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297e+00;DB;DP=98;ExcessHet=3.9794;FS=5.239;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=-1.461e+00;SOR=0.988;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,40:98:99:0|1:1087327_G_GCTGCCCAGGCTGGAGCCAGCC:1386,0,3503:1087327
chr4	1087487	rs60035268	G	A	1340.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611e+00;DB;DP=90;ExcessHet=3.0103;FS=8.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=8.000e-03;SOR=0.424;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,55:90:99:1349,0,895
chr4	1087901	rs13106356	A	G	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158e+00;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-1.750e-01;SOR=0.120;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:141,0,197
chr4	1090625	rs4045481	G	A	2326.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.690;DB;DP=81;ExcessHet=6.9897;FS=2.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.464;SOR=0.553;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,38:81:99:980,0,1081
chr4	1093914	rs616569	A	G	1740.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.48;ReadPosRankSum=-1.834e+00;SOR=0.920;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:936,75,0
chr4	1102050	rs4974644	C	T	4865.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.240e-01;DB;DP=58;ExcessHet=3.0103;FS=0.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=-1.639e+00;SOR=0.580;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1643,173,0
chr4	1164277	rs2279279	C	G	5286.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.92;DB;DP=101;ExcessHet=1.5490;FS=4.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=-1.416e+00;SOR=0.467;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3504,302,0
chr4	1164552	rs13115935	A	G	19039.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=255;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=0.039;SOR=0.629;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,253:255:99:7858,715,0
chr4	1165130	rs11247975	G	T	8757.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.062;DB;DP=184;ExcessHet=1.5490;FS=0.438;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=-2.290e+00;SOR=0.752;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,184:184:99:6014,551,0
chr4	1165516	rs2242278	G	A	782.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.463e+00;DB;DP=20;ExcessHet=3.9794;FS=6.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=-2.310e-01;SOR=2.019;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:362,0,333
chr4	1165587	rs2242279	C	G	1864.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.956e+00;DB;DP=92;ExcessHet=3.9794;FS=4.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=1.45;SOR=0.422;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,43:92:99:971,0,1370
chr4	1165741	rs922697	A	G	14173.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=1.043;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4106,402,0
chr4	1194594	rs13115903	A	T	24695.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.240e-01;DB;DP=439;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=1.88;SOR=0.661;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,439:439:99:13773,1312,0
chr4	1207517	rs11247979	T	C	3264.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.567e+00;DB;DP=35;ExcessHet=3.0103;FS=5.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.32;ReadPosRankSum=0.255;SOR=3.442;VQSLOD=16.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1279,105,0
chr4	1207597	rs11937232	G	C	304.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.242e+00;DB;DP=7;ExcessHet=1.5490;FS=4.260;MQ=60.00;MQRankSum=0.00;QD=19.05;ReadPosRankSum=-2.410e-01;SOR=2.670;VQSLOD=18.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr4	1216951	rs2020137	A	C	521.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=1.329;VQSLOD=4.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr4	1217056	rs2004531	G	A	3022.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.382e+00;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=-5.030e-01;SOR=0.753;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,27:43:99:769,0,540
chr4	1222302	rs900020	G	A	1256.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=-4.310e-01;SOR=0.754;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:406,0,355
chr4	1243279	.	C	CGCCGCA	1803.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292e+00;DP=16;ExcessHet=3.0103;FS=4.812;MQ=60.00;MQRankSum=0.00;QD=35.42;ReadPosRankSum=-1.419e+00;SOR=3.126;VQSLOD=3.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,11:16:99:480,0,339
chr4	1243573	rs1680032	T	C	9709.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=131;ExcessHet=3.0103;FS=2.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=0.222;SOR=0.888;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,59:131:99:1423,0,1567
chr4	1243617	rs3755920	T	C	3976.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=98;ExcessHet=6.9897;FS=0.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-5.810e-01;SOR=0.745;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1184,0,1321
chr4	1244267	rs2291199	A	G	273.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.702;SOR=1.347;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:155,0,172
chr4	1244416	rs1732115	A	G	5066.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.810e-01;DB;DP=72;ExcessHet=3.0103;FS=0.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.96;ReadPosRankSum=0.908;SOR=0.820;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:813,0,976
chr4	1244879	rs1564508	A	G	7591.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=212;ExcessHet=6.9897;FS=1.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=1.01;SOR=0.577;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,110:212:99:2640,0,2307
chr4	1291640	rs2293633	T	C	809.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069e+00;DB;DP=27;ExcessHet=3.9794;FS=4.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-1.900e-01;SOR=0.171;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:377,0,522
chr4	1291711	rs2293634	T	G	2170.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=60;ExcessHet=6.9897;FS=11.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.238;SOR=0.297;VQSLOD=17.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,19:60:99:461,0,1180
chr4	1291791	rs2293635	A	G	1962.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=92;ExcessHet=3.9794;FS=1.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=1.05;SOR=0.807;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,32:92:99:783,0,1442
chr4	1309068	rs77610549	C	T	3867.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.975e+00;DB;DP=117;ExcessHet=3.9794;FS=0.905;MQ=59.93;MQRankSum=-1.008e+00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=2.10;SOR=0.907;VQSLOD=1.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,53:117:99:1649,0,2138
chr4	1315917	rs2293631	C	A	178.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.43;SOR=3.611;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr4	1317192	rs2141656	C	T	50.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=-3.660e-01;SOR=0.223;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,189
chr4	1317247	rs77343904	G	A	823.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=1.64;SOR=0.495;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:349,0,229
chr4	1321516	rs2335937	C	A	1098.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-3.450e-01;SOR=0.727;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,46:89:99:1107,0,1074
chr4	1330530	rs12646130	G	C	315.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-9.740e-01;SOR=1.609;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:324,0,142
chr4	1330759	rs1128427	T	C	2323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=250;ExcessHet=3.0103;FS=0.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=1.70;SOR=0.747;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,105:250:99:2332,0,3419
chr4	1330975	rs28418481	C	G	454.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-1.700e-01;SOR=0.627;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:463,0,508
chr4	1331030	rs28493051	A	C	187.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=0.464;SOR=0.892;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:196,0,137
chr4	1332175	rs13147602	A	G	3369.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.42;DB;DP=73;ExcessHet=3.9794;FS=12.293;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=-1.510e-01;SOR=2.796;VQSLOD=13.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1342,0,1027
chr4	1343405	rs2276903	T	C	1149.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.930e-01;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=0.672;SOR=0.665;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,55:113:99:1158,0,1269
chr4	1345647	rs10000797	G	A	165.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=15;ExcessHet=3.0103;FS=2.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=-6.880e-01;SOR=1.371;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:174,0,231
chr4	1346682	rs28711287	G	C	189.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.360e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=0.603;SOR=0.293;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:198,0,437
chr4	1348806	rs3903127	A	C	813.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=55;ExcessHet=3.0103;FS=2.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-1.243e+00;SOR=1.055;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,25:55:99:822,0,921
chr4	1369093	rs11941200	C	G	2416.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.386e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=1.02;SOR=0.747;VQSLOD=6.44;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:1369093_C_G:945,63,0:1369093
chr4	1369094	rs11946956	T	G	2416.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=1.10;SOR=0.747;VQSLOD=6.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:1369093_C_G:945,63,0:1369093
chr4	1373699	rs112142388	C	CTTT	2395.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.900e-02;DB;DP=31;ExcessHet=3.9794;FS=3.887;MQ=60.00;MQRankSum=0.00;QD=25.76;ReadPosRankSum=-8.550e-01;SOR=2.271;VQSLOD=5.25;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:99:1|1:1373699_C_CTTT:1485,99,0:1373699
chr4	1373701	rs56108910	C	G	2401.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.90;DB;DP=33;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=25.28;ReadPosRankSum=-8.550e-01;SOR=2.334;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:1373699_C_CTTT:1485,99,0:1373699
chr4	1374695	rs28614045	C	A	13743.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.77;DB;DP=204;ExcessHet=3.9794;FS=2.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=0.260;SOR=0.518;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,204:204:99:7055,611,0
chr4	1374774	rs28522910	C	T	6528.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.91;DB;DP=86;ExcessHet=3.9794;FS=5.272;MQ=60.00;MQRankSum=0.00;QD=19.97;ReadPosRankSum=0.733;SOR=1.014;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2929,257,0
chr4	1374787	rs114546495	G	A	2977.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.903e+00;DB;DP=74;ExcessHet=3.9794;FS=0.684;MQ=60.00;MQRankSum=0.00;QD=18.04;ReadPosRankSum=0.444;SOR=0.768;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,39:74:99:1067,0,1029
chr4	1374789	rs28733902	A	G	6489.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=72;ExcessHet=3.9794;FS=2.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=0.317;SOR=0.895;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2908,217,0
chr4	1374919	rs28678404	G	A	162.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.18;ReadPosRankSum=1.07;SOR=1.609;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:62:171,0,62
chr4	1377615	rs9996817	A	G	14577.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.470e-01;DB;DP=233;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=-4.320e-01;SOR=0.761;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,233:233:99:6807,699,0
chr4	1377873	rs9683830	A	G	487.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=-3.280e-01;SOR=0.399;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:250,18,0
chr4	1379494	rs78013320	G	A	479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=16;ExcessHet=3.9794;FS=3.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=0.702;SOR=1.845;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:272,0,228
chr4	1388115	rs6599309	C	G	2231.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.18;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=1.27;SOR=1.414;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:945,66,0
chr4	1388583	rs9328733	A	G	32689.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.24;DB;DP=620;ExcessHet=3.9794;FS=1.167;MQ=59.85;MQRankSum=0.322;QD=17.70;ReadPosRankSum=1.12;SOR=0.568;VQSLOD=0.671;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,620:620:99:18507,1850,0
chr4	1388755	rs373946226	C	G	225.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.778;DB;DP=11;ExcessHet=0.4576;FS=9.622;MQ=49.68;MQRankSum=-1.231e+00;NEGATIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=2.36;SOR=1.977;VQSLOD=-3.228e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,9:11:48:237,48,0
chr4	1388757	rs138170890	T	C	226.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=11;ExcessHet=0.4576;FS=9.622;MQ=49.81;MQRankSum=-1.231e+00;NEGATIVE_TRAIN_SITE;QD=20.58;ReadPosRankSum=2.36;SOR=1.977;VQSLOD=-3.193e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,9:11:51:238,51,0
chr4	1388788	.	C	CGTGGAGTGCCCGCCTGCTCACACGTGCCCAT	6853.16	PASS	AC=1;AF=0.500;AN=2;DP=120;ExcessHet=3.9794;FS=0.000;MQ=53.91;QD=28.44;SOR=0.592;VQSLOD=4.48;culprit=SOR	GT:AD:DP:GQ:PL	0/1:120,0:120:99:4045,0,4374
chr4	1388891	rs79209471	T	C	6300.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=496;ExcessHet=3.0103;FS=6.984;MQ=59.05;MQRankSum=2.28;NEGATIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-1.867e+00;SOR=0.667;VQSLOD=-1.746e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:216,280:496:99:6309,0,5025
chr4	1389156	rs71614972	T	C	17449.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.966e+00;DB;DP=314;ExcessHet=3.9794;FS=0.000;MQ=59.09;MQRankSum=-1.975e+00;QD=18.25;ReadPosRankSum=0.266;SOR=0.699;VQSLOD=-6.589e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,313:314:99:1|1:1389156_T_C:11317,935,0:1389156
chr4	1389161	rs71614973	A	G	4120.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467e+00;DB;DP=355;ExcessHet=3.0103;FS=8.095;MQ=58.69;MQRankSum=-1.332e+00;NEGATIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-2.731e+00;SOR=0.427;VQSLOD=-2.132e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:148,207:355:99:0|1:1389156_T_C:4129,0,4111:1389156
chr4	1397297	rs11945310	T	G	3707.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.521e+00;DB;DP=50;ExcessHet=3.9794;FS=2.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=-8.590e-01;SOR=0.889;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1802,150,0
chr4	1400172	rs72613115	T	C	1709.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.161;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.80;ReadPosRankSum=0.633;SOR=1.048;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1092,99,0
chr4	1400313	rs80346978	C	T	72.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.16;ReadPosRankSum=1.50;SOR=0.693;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:31:81,0,31
chr4	1619865	rs11722375	T	C	4799.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558e+00;DB;DP=146;ExcessHet=6.9897;FS=1.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.915;SOR=0.593;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,62:146:99:1579,0,2135
chr4	1642963	rs149453327	C	G	1327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=59.82;MQRankSum=0.916;QD=13.14;ReadPosRankSum=-1.483e+00;SOR=0.711;VQSLOD=0.092;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,45:101:99:1336,0,1628
chr4	1646017	rs4865428	C	G	4163.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.319e+00;DB;DP=146;ExcessHet=3.9794;FS=0.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=2.23;SOR=0.782;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,70:146:99:1859,0,2075
chr4	1656801	rs62287700	A	C	1349.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.397e+00;DB;DP=106;ExcessHet=3.0103;FS=2.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.740e-01;SOR=0.447;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,52:106:99:1358,0,1453
chr4	1657281	rs79735962	G	A	3596.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=229;ExcessHet=3.0103;FS=1.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-5.690e-01;SOR=0.781;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,129:229:99:3605,0,2566
chr4	1659128	rs56214302	T	C	730.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=-7.510e-01;SOR=0.602;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:739,0,676
chr4	1698183	rs798719	C	T	2378.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.537e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.72;ReadPosRankSum=-5.450e-01;SOR=0.818;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,15:21:99:441,0,203
chr4	1701317	rs2247341	G	A	7161.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=136;ExcessHet=1.5490;FS=1.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-4.600e-02;SOR=0.590;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,78:136:99:1950,0,1354
chr4	1718883	rs2236787	A	T	1321.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.441e+00;DB;DP=27;ExcessHet=1.5490;FS=7.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=-1.440e+00;SOR=0.149;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:446,0,385
chr4	1719294	rs2236786	T	C	1656.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028e+00;DB;DP=147;ExcessHet=3.0103;FS=2.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.19;SOR=0.463;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,69:147:99:1665,0,1947
chr4	1719572	rs798751	A	G	1769.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.79;DB;DP=24;ExcessHet=3.9794;FS=4.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=0.527;SOR=1.376;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:360,0,412
chr4	1719620	rs743569	T	G	834.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=11;ExcessHet=1.5490;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.92;ReadPosRankSum=0.175;SOR=1.781;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:172,0,174
chr4	1720757	rs798754	A	G	1530.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=19;ExcessHet=3.9794;FS=2.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=1.25;SOR=0.182;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:248,0,404
chr4	1720793	rs148117097	A	AG	3099.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.180e-01;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.54;ReadPosRankSum=-5.550e-01;SOR=0.634;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,17:36:99:0|1:1720793_A_AG:731,0,870:1720793
chr4	1720794	rs61675353	T	G	3099.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=38;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.06;ReadPosRankSum=-1.081e+00;SOR=0.702;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,19:38:99:0|1:1720793_A_AG:731,0,870:1720793
chr4	1720824	rs798755	A	G	4362.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=68;ExcessHet=3.9794;FS=0.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.26;ReadPosRankSum=0.264;SOR=0.825;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,35:68:99:983,0,792
chr4	1725651	rs3099555	T	C	4435.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=60;ExcessHet=3.9794;FS=1.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=-5.120e-01;SOR=0.852;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,32:60:99:855,0,777
chr4	1732573	rs146419121	GGGGT	G	1068.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=46;ExcessHet=3.0103;FS=2.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=0.707;SOR=0.357;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,27:46:99:1077,0,915
chr4	1737108	rs3752747	C	T	5511.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=114;ExcessHet=1.5490;FS=7.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=-8.880e-01;SOR=1.185;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,49:114:99:1232,0,1551
chr4	1737262	rs3752749	T	C	2634.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.22;ReadPosRankSum=-5.850e-01;SOR=0.914;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:417,0,364
chr4	1737404	rs34859791	C	CCT	9350.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DB;DP=120;ExcessHet=3.9794;FS=0.884;MQ=60.00;MQRankSum=0.00;QD=28.00;ReadPosRankSum=0.546;SOR=0.639;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:59,61:120:99:2416,0,2361
chr4	1737502	rs11248073	C	T	5445.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=114;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=0.048;SOR=0.678;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,58:114:99:1442,0,1289
chr4	1737585	rs11729657	T	C	3078.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630e-01;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=0.050;SOR=0.735;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:615,0,500
chr4	1739518	rs140693140	CGCCATCCCT	C	9999.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=161;ExcessHet=1.5490;FS=0.913;MQ=60.00;MQRankSum=0.00;QD=29.59;ReadPosRankSum=-1.760e+00;SOR=0.628;VQSLOD=5.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:102,59:161:99:2095,0,5760
chr4	1739592	rs2305188	A	G	9478.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=162;ExcessHet=3.9794;FS=3.444;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=1.06;SOR=0.972;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,67:162:99:1675,0,2275
chr4	1742779	rs1530588	G	A	825.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.77;ReadPosRankSum=0.700;SOR=1.402;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:185,0,178
chr4	1746125	rs34848704	C	CT	1086.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.021e+00;DB;DP=19;ExcessHet=1.5490;FS=4.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=-1.779e+00;SOR=2.774;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:19:99:354,0,243
chr4	1746229	rs2290011	G	T	4568.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.291e+00;DB;DP=91;ExcessHet=1.5490;FS=3.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.92;ReadPosRankSum=-1.059e+00;SOR=1.020;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,52:91:99:1256,0,937
chr4	1746844	rs8389	A	T	2978.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e+00;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=1.74;SOR=0.712;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:486,0,714
chr4	1795321	rs4450996	C	A	407.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=0.657;SOR=1.022;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:1795321_C_A:257,0,137:1795321
chr4	1795333	rs17879199	C	T	125.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=11;ExcessHet=3.0103;FS=2.632;MQ=60.00;MQRankSum=0.00;QD=11.41;ReadPosRankSum=0.00;SOR=1.535;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:1|0:1795321_C_A:134,0,282:1795321
chr4	1795557	rs10023340	T	C	1277.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.32;SOR=3.407;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:515,36,0
chr4	1801511	rs3135867	C	T	1475.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.430e-01;DB;DP=145;ExcessHet=3.0103;FS=0.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.17;ReadPosRankSum=-6.060e-01;SOR=0.639;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,66:145:99:1484,0,2037
chr4	1803307	rs2305183	T	C	3904.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DB;DP=365;ExcessHet=3.0103;FS=0.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-5.800e-02;SOR=0.632;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:198,167:365:99:3913,0,4951
chr4	1803704	rs2234909	T	C	4258.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.673e+00;DB;DP=389;ExcessHet=3.0103;FS=2.131;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=1.02;SOR=0.594;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:199,190:389:99:4267,0,4704
chr4	1803824	rs2305184	C	G	1464.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.91;DB;DP=86;ExcessHet=3.0103;FS=2.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=-2.070e-01;SOR=0.223;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,44:86:99:1473,0,1296
chr4	1805296	rs3135883	G	A	3365.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.50;SOR=7.476;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1273,96,0
chr4	1806012	rs377096563	TG	T	1083.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DB;DP=79;ExcessHet=3.9794;FS=3.516;MQ=60.00;MQRankSum=0.00;QD=8.21;ReadPosRankSum=2.86;SOR=1.061;VQSLOD=4.33;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,40:79:99:921,0,780
chr4	1806834	rs4865476	G	C	1832.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.62;SOR=0.813;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
chr4	1807894	rs7688609	G	A	28390.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=343;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.23;SOR=0.764;VQSLOD=4.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,343:343:99:10485,1026,0
chr4	1809127	rs34003391	CGT	C	5199.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.62;SOR=1.097;VQSLOD=3.99;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,43:45:99:1598,133,0
chr4	1815884	rs4242021	A	G	249.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=4.174;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr4	1815990	rs4865477	G	A	1527.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.50;SOR=5.892;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr4	1818594	rs9328763	C	T	12537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.54;SOR=2.131;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3735,338,0
chr4	1824020	rs28681468	C	T	2172.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=163;ExcessHet=3.0103;FS=1.226;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=2.58;SOR=0.574;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,85:163:99:2181,0,1809
chr4	1824364	rs4376202	C	T	548.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.28;SOR=1.329;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr4	1834366	.	T	TAGAACGAAATTG	1121.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-01;DP=82;ExcessHet=3.0103;FS=0.950;MQ=59.85;MQRankSum=0.00;QD=13.67;ReadPosRankSum=-1.497e+00;SOR=0.890;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,28:82:99:0|1:1834366_T_TAGAACGAAATTG:1130,0,12708:1834366
chr4	1834367	.	TC	T	1121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DP=86;ExcessHet=3.0103;FS=2.024;MQ=59.86;MQRankSum=0.00;QD=13.04;ReadPosRankSum=-1.521e+00;SOR=1.038;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,29:86:99:0|1:1834366_T_TAGAACGAAATTG:1130,0,12708:1834366
chr4	1834371	.	C	A	1081.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.330e-01;DP=86;ExcessHet=3.0103;FS=1.994;MQ=59.86;MQRankSum=0.00;QD=12.57;ReadPosRankSum=-1.438e+00;SOR=0.947;VQSLOD=4.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,28:86:99:0|1:1834366_T_TAGAACGAAATTG:1090,0,12822:1834366
chr4	1834373	.	T	A	1039.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DP=90;ExcessHet=3.0103;FS=0.900;MQ=59.86;MQRankSum=0.00;QD=11.55;ReadPosRankSum=-1.665e+00;SOR=0.902;VQSLOD=4.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,30:90:99:0|1:1834366_T_TAGAACGAAATTG:1048,0,12825:1834366
chr4	1838482	.	A	C	31.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.574e+00;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.42;ReadPosRankSum=-3.920e-01;SOR=0.404;VQSLOD=20.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:22:40:40,0,577
chr4	1851157	rs55850542	A	G	184.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=0.967;SOR=1.022;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:74,0,31
chr4	1954945	rs489550	A	G	13712.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.09;SOR=0.763;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4506,444,0
chr4	1961137	rs474235	G	A	3114.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DB;DP=43;ExcessHet=3.9794;FS=6.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.937;SOR=1.306;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:520,0,736
chr4	1993985	rs580602	G	A	1085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=0.620;SOR=0.836;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:420,0,477
chr4	1994102	rs1116585	G	A	5302.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769e+00;DB;DP=204;ExcessHet=3.9794;FS=3.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.525;SOR=0.480;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,89:204:99:2163,0,3251
chr4	2009095	rs382441	C	T	1141.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.340e-01;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=-1.360e-01;SOR=0.663;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:380,0,323
chr4	2010397	rs114311037	G	A	1710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.167e+00;DB;DP=47;ExcessHet=3.9794;FS=4.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.233;SOR=0.313;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,28:47:99:689,0,576
chr4	2010831	rs231189	G	C	1026.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DB;DP=37;ExcessHet=3.9794;FS=7.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-2.990e-01;SOR=2.076;VQSLOD=19.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:421,0,585
chr4	2044128	rs570712	C	T	2070.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.39;SOR=1.143;VQSLOD=4.03;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,21:21:65:598,65,0
chr4	2044311	rs7654492	C	A	181.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DB;DP=5;ExcessHet=3.9794;FS=2.276;MQ=60.00;MQRankSum=0.00;QD=13.93;ReadPosRankSum=1.42;SOR=1.034;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:84,0,28
chr4	2044790	rs405638	G	A	276.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.524;SOR=0.784;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:72:72,0,77
chr4	2065373	rs454226	T	G	397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=-9.840e-01;SOR=0.257;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:101,0,31
chr4	2065946	rs11248082	A	C	895.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.99;ReadPosRankSum=-3.860e-01;SOR=2.468;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:337,24,0
chr4	2087202	rs3135157	A	G	255.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.524;SOR=0.582;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,97
chr4	2158102	rs34241266	CT	C	1249.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-02;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=-5.900e-02;SOR=0.710;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,15:18:21:318,0,21
chr4	2158273	rs3216822	GGA	G	1875.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.368;DB;DP=23;ExcessHet=6.9897;FS=1.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=-2.100e-02;SOR=0.893;VQSLOD=7.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,14:23:99:554,0,310
chr4	2158352	rs137954994	TCTC	T	1363.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.148;DB;DP=34;ExcessHet=3.9794;FS=4.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=1.23;SOR=1.383;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,20:34:99:798,0,507
chr4	2158408	rs428361	C	T	4331.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.797e+00;DB;DP=50;ExcessHet=3.0103;FS=0.871;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=-1.353e+00;SOR=0.606;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1750,150,0
chr4	2159449	.	CAAAAAAA	C	518.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DP=11;ExcessHet=6.9897;FS=3.554;MQ=59.22;MQRankSum=0.00;QD=18.53;ReadPosRankSum=0.189;SOR=2.093;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:11:99:263,0,121
chr4	2173046	rs62285183	G	A	159.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.524;SOR=0.551;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:104,0,96
chr4	2175733	rs2022302	A	G	2834.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.323e+00;DB;DP=78;ExcessHet=6.9897;FS=2.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-6.000e-01;SOR=0.559;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,37:78:99:827,0,1086
chr4	2175791	rs2022343	T	C	2584.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.126e+00;DB;DP=47;ExcessHet=6.9897;FS=7.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=1.20;SOR=0.285;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,22:47:99:0|1:2175791_T_C:837,0,1319:2175791
chr4	2175792	rs61383215	C	G	2584.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.401e+00;DB;DP=46;ExcessHet=6.9897;FS=8.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=1.16;SOR=0.274;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,21:46:99:0|1:2175791_T_C:837,0,1319:2175791
chr4	2176351	rs12647917	G	A	2264.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256e+00;DB;DP=65;ExcessHet=6.9897;FS=1.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-1.036e+00;SOR=0.562;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,27:65:99:607,0,1020
chr4	2176454	rs9328764	G	A	2656.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.510e-01;DB;DP=70;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-7.100e-01;SOR=0.660;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,30:70:99:644,0,946
chr4	2176506	rs6822665	C	T	1718.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=36;ExcessHet=6.9897;FS=3.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.159;SOR=0.409;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,14:36:99:348,0,643
chr4	2176551	rs111301518	CT	C	387.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=0.674;SOR=1.765;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:3:127,0,3
chr4	2178108	rs6599411	C	T	1710.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.646e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=0.346;SOR=0.752;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:525,0,396
chr4	2178127	rs6599412	T	G	1371.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=0.056;SOR=0.957;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:429,0,222
chr4	2178149	rs6599413	G	A	921.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.277;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.468;SOR=0.293;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:221,0,127
chr4	2178196	rs6599414	C	T	360.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=1.04;SOR=0.616;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:93:105,0,93
chr4	2179074	rs6810845	A	G	3657.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.410e-01;DB;DP=94;ExcessHet=6.9897;FS=2.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=-1.100e-01;SOR=0.795;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,49:94:99:1135,0,1104
chr4	2179086	rs6816862	T	C	3658.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DB;DP=91;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.149;SOR=0.669;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,47:91:99:1154,0,1030
chr4	2180912	rs34980083	G	A	345.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=0.319;SOR=1.765;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:106,0,33
chr4	2181016	rs35787308	T	C	785.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.880e-01;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-1.021e+00;SOR=0.546;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:323,0,329
chr4	2181080	rs6830513	T	C	1622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830e-01;DB;DP=52;ExcessHet=6.9897;FS=1.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-9.090e-01;SOR=0.548;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:706,0,698
chr4	2181276	rs35024704	G	T	468.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.610e-01;DB;DP=22;ExcessHet=3.9794;FS=1.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=1.77;SOR=0.368;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:339,0,354
chr4	2181313	rs6820291	C	G	409.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.139e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-6.740e-01;SOR=1.022;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:224,0,296
chr4	2181359	rs6820321	C	T	146.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=-1.292e+00;SOR=1.179;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:153,0,108
chr4	2194698	rs10009082	C	T	147.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.524;SOR=0.892;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:87:87,0,212
chr4	2194901	rs10015921	A	C	2048.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325e+00;DB;DP=52;ExcessHet=6.9897;FS=1.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=0.124;SOR=0.545;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,24:52:99:525,0,739
chr4	2194946	rs10011549	C	T	4085.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.890e-01;DB;DP=67;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=-4.220e-01;SOR=0.692;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,32:67:99:0|1:2194946_C_T:1232,0,1760:2194946
chr4	2194953	rs10002583	G	A	4120.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910e+00;DB;DP=68;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=-2.580e-01;SOR=0.713;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,32:68:99:0|1:2194946_C_T:1233,0,1760:2194946
chr4	2195024	rs10018786	T	G	2167.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.152;DB;DP=58;ExcessHet=6.9897;FS=0.500;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-6.000e-01;SOR=0.732;VQSLOD=6.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:648,0,748
chr4	2195089	rs10018882	T	C	1455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=25;ExcessHet=6.9897;FS=0.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.787;SOR=0.548;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:236,0,560
chr4	2195128	rs10016105	A	G	857.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476e+00;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.219;SOR=0.811;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:142,0,308
chr4	2195151	rs10011749	C	T	648.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=-1.019e+00;SOR=0.746;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:129,0,193
chr4	2230075	.	CT	C	141.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.78;MQRankSum=0.00;QD=6.41;ReadPosRankSum=-2.310e-01;SOR=0.999;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:10:44:44,0,63
chr4	2230232	rs3762944	T	G	178.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,4:5:5:121,5,0
chr4	2230266	rs61792605	G	T	66.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:74,0,66
chr4	2233709	rs11937432	A	G	1967.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=73;ExcessHet=3.9794;FS=0.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.708;SOR=0.633;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,39:73:99:873,0,811
chr4	2251893	rs61789367	G	A	2041.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.954e+00;DB;DP=100;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.766;SOR=0.662;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,52:100:99:1247,0,1280
chr4	2252201	rs1052682	C	T	1386.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e-01;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=-8.260e-01;SOR=0.622;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:453,0,175
chr4	2252624	rs2071659	A	G	1018.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193e+00;DB;DP=18;ExcessHet=6.9897;FS=1.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=-8.540e-01;SOR=1.085;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:246,0,329
chr4	2252845	rs2233042	C	T	974.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=60;ExcessHet=3.9794;FS=1.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=1.57;SOR=0.900;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,20:60:99:525,0,999
chr4	2252980	rs2071658	T	G	2652.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045e+00;DB;DP=95;ExcessHet=6.9897;FS=1.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.250;SOR=0.568;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,51:95:99:1130,0,1078
chr4	2256716	rs2236998	A	G	669.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=1.38;SOR=2.066;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:165,0,23
chr4	2256798	rs2236999	T	C	2175.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562e+00;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=-1.012e+00;SOR=0.802;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:551,0,362
chr4	2260812	rs28619238	T	C	1690.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306e+00;DB;DP=35;ExcessHet=6.9897;FS=5.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=-4.870e-01;SOR=0.320;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:533,0,432
chr4	2262104	rs79682447	G	A	667.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.195e+00;DB;DP=21;ExcessHet=3.9794;FS=4.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=-2.950e-01;SOR=2.522;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:361,0,324
chr4	2262191	rs2269487	A	G	3659.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=81;ExcessHet=6.9897;FS=2.077;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.206;SOR=0.527;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,46:81:99:1512,0,896
chr4	2272865	rs11728581	G	A	1715.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.64;ReadPosRankSum=0.804;SOR=2.428;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:588,45,0
chr4	2275145	rs736455	G	A	5668.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.982;DB;DP=51;ExcessHet=3.0103;FS=1.354;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=1.68;SOR=1.103;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1957,153,0
chr4	2275718	rs2182682	G	A	7443.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=102;ExcessHet=3.0103;FS=1.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=1.59;SOR=0.600;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3274,306,0
chr4	2275835	rs2051561	G	A	15216.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=200;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=1.92;SOR=0.659;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,199:200:99:6080,588,0
chr4	2276047	rs11248093	T	C	1598.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.46;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.63;ReadPosRankSum=-2.450e-01;SOR=1.421;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:707,51,0
chr4	2306053	rs661301	A	G	14803.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.950e-01;DB;DP=177;ExcessHet=3.0103;FS=0.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=-3.030e-01;SOR=0.550;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5463,531,0
chr4	2307466	rs4974648	T	C	182.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.160e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.816;SOR=0.307;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:191,0,140
chr4	2321692	rs2071685	A	G	357.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-4.250e-01;SOR=0.481;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:98:128,0,98
chr4	2322039	rs113929105	G	GC	2736.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=82;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.358;SOR=0.663;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1206,0,897
chr4	2337256	rs2071683	G	A	197.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-2.000e-01;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:95:97,0,95
chr4	2337603	rs599642	G	T	4223.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.990e-01;DB;DP=75;ExcessHet=6.9897;FS=3.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.340;SOR=0.932;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,32:75:99:0|1:2337603_G_T:1203,0,2303:2337603
chr4	2337604	rs599639	C	T	4223.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=74;ExcessHet=6.9897;FS=3.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=0.436;SOR=0.955;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,31:74:99:0|1:2337603_G_T:1203,0,2303:2337603
chr4	2339002	rs35484376	G	A	374.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=0.992;SOR=1.022;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:42:333,0,42
chr4	2339330	rs73203396	G	A	533.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.25;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=1.86;SOR=0.892;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:542,0,438
chr4	2340901	rs657189	T	G	323.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.99;ReadPosRankSum=-3.660e-01;SOR=0.693;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:167,15,0
chr4	2341137	rs2071681	C	T	1383.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=98;ExcessHet=3.0103;FS=0.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=-4.580e-01;SOR=0.508;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,49:98:99:1392,0,1413
chr4	2341194	rs2071680	T	C	13833.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.935;DB;DP=232;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.859;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.961;SOR=0.671;VQSLOD=2.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,232:232:99:7090,694,0
chr4	2341445	rs13110406	A	G	404.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.71;MQRankSum=-1.076e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.260e-01;SOR=1.312;VQSLOD=0.083;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,13:30:99:413,0,525
chr4	2343150	rs3118613	T	A	818.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.226e+00;DB;DP=16;ExcessHet=6.9897;FS=6.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-3.620e-01;SOR=0.071;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:191,0,358
chr4	2343181	rs2071679	C	T	464.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.427;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=0.358;SOR=0.730;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:473,0,266
chr4	2343349	rs615447	C	G	5178.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=151;ExcessHet=6.9897;FS=1.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=-1.440e-01;SOR=0.773;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,76:151:99:1801,0,1807
chr4	2355506	rs3128831	T	C	433.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=-3.660e-01;SOR=0.793;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:20:185,0,20
chr4	2355554	rs2031726	G	A	130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-3.490e-01;SOR=0.120;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:139,0,193
chr4	2357680	rs3135130	C	T	1297.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DB;DP=26;ExcessHet=6.9897;FS=1.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-6.800e-01;SOR=0.867;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:231,0,398
chr4	2427985	rs733033	T	C	129.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=-2.530e-01;SOR=1.329;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:138,0,67
chr4	2428463	rs2269493	G	A	314.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=-4.510e-01;SOR=1.329;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:323,0,155
chr4	2438492	rs1203763	T	C	926.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=15;ExcessHet=3.9794;FS=7.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=0.00;SOR=2.546;VQSLOD=18.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:296,0,167
chr4	2439670	rs1203762	A	G	3996.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.276e+00;DB;DP=57;ExcessHet=3.9794;FS=5.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=0.270;SOR=1.244;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:723,0,817
chr4	2439738	rs7688771	G	A	2515.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=186;ExcessHet=3.0103;FS=1.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=-1.373e+00;SOR=0.881;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,97:186:99:2524,0,2150
chr4	2439756	rs5855731	C	CT	8048.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.920e-01;DB;DP=217;ExcessHet=3.9794;FS=2.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-5.890e-01;SOR=0.538;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:105,112:217:99:3801,0,3558
chr4	2439900	rs7660914	C	A	4623.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493e+00;DB;DP=181;ExcessHet=3.9794;FS=2.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.12;SOR=0.872;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,81:181:99:2099,0,2753
chr4	2439965	rs17132558	G	C	1141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.39;DB;DP=65;ExcessHet=3.0103;FS=15.987;MQ=59.81;MQRankSum=-1.016e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-9.200e-02;SOR=4.105;VQSLOD=-1.458e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,31:65:99:1150,0,1010
chr4	2440021	rs28599556	A	G	1034.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.21;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.15;ReadPosRankSum=1.39;SOR=0.767;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:484,0,360
chr4	2440075	rs80072321	T	C	294.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.72;ReadPosRankSum=-2.017e+00;SOR=0.527;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:158,0,176
chr4	2446560	rs3108495	C	T	395.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.67;SOR=3.442;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr4	2446644	rs3128842	G	A	1318.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.563e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=-7.760e-01;SOR=0.660;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:360,33,0
chr4	2451694	rs3108494	T	C	17370.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=181;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=0.914;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,181:181:99:5674,542,0
chr4	2451949	rs2239735	A	G	2850.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.883e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=-7.940e-01;SOR=1.270;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1118,87,0
chr4	2452933	rs3888113	T	C	10956.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.23;DB;DP=140;ExcessHet=3.0103;FS=0.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-8.600e-02;SOR=0.810;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4600,420,0
chr4	2460292	rs28671535	C	T	223.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=3;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=0.967;SOR=2.179;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:78:0|1:2460292_C_T:78,0,104:2460292
chr4	2460301	rs28517366	T	C	261.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=1.38;SOR=1.828;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:2460292_C_T:78,0,104:2460292
chr4	2460571	rs73205493	C	T	1081.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.775;DB;DP=84;ExcessHet=3.0103;FS=0.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.255;SOR=0.874;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,44:84:99:1090,0,917
chr4	2460803	rs704346	A	G	2839.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.702e+00;DB;DP=57;ExcessHet=1.5490;FS=1.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=-1.200e+00;SOR=0.516;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1924,171,0
chr4	2461888	rs3135152	A	G	13766.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=0.898;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4739,476,0
chr4	2464179	rs3135150	A	G	1877.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.843;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=-1.092e+00;SOR=0.643;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:859,78,0
chr4	2499117	rs3749467	T	G	153.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.65;SOR=3.258;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr4	2502299	rs55745322	A	ATT	2617.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.94;SOR=4.407;VQSLOD=6.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:849,57,0
chr4	2513620	rs3128839	G	A	3633.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.87;SOR=0.815;VQSLOD=18.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:2513620_G_A:945,63,0:2513620
chr4	2513624	rs4974709	A	G	2730.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.24;SOR=0.899;VQSLOD=19.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:2513620_G_A:970,66,0:2513620
chr4	2513842	rs2269490	A	G	469.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.55;SOR=0.693;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:185,18,0
chr4	2641777	rs71938107	TAA	T	266.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=-7.320e-01;SOR=0.223;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr4	2674271	rs17825119	G	T	2071.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=-2.440e-01;SOR=4.731;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:398,0,109
chr4	2695117	rs231709	T	C	4270.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=3.056;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1148,84,0
chr4	2697089	rs2239726	A	C	629.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=5.549;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:301,21,0
chr4	2698364	rs3733215	C	T	2054.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.121e+00;DB;DP=62;ExcessHet=3.9794;FS=3.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.817;SOR=1.018;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,27:62:99:694,0,1089
chr4	2701495	.	A	T	584.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100e-01;DP=46;ExcessHet=3.0103;FS=4.112;MQ=60.00;MQRankSum=0.00;QD=12.70;ReadPosRankSum=0.077;SOR=1.329;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:593,0,631
chr4	2702534	rs11355964	CA	C	91.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.01;ReadPosRankSum=-6.520e-01;SOR=0.941;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:66:99,0,66
chr4	2717690	rs2295499	C	T	1266.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=-3.020e-01;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:418,0,504
chr4	2721811	rs556203	C	T	1254.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=16;ExcessHet=3.9794;FS=2.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=1.18;SOR=1.096;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:179,0,187
chr4	2743999	rs232712	A	G	3176.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=6.713;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:889,72,0
chr4	2744087	rs2269495	G	A	2831.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421e+00;DB;DP=109;ExcessHet=3.9794;FS=1.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=1.65;SOR=0.783;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,46:109:99:1202,0,1799
chr4	2744480	rs9683949	C	T	550.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.208e+00;DB;DP=16;ExcessHet=3.9794;FS=3.053;MQ=59.74;MQRankSum=0.904;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.136;SOR=2.043;VQSLOD=0.348;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,6:16:99:0|1:2744480_C_T:191,0,356:2744480
chr4	2746285	rs13145281	A	C	2038.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.779;DB;DP=87;ExcessHet=3.9794;FS=10.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-2.020e+00;SOR=1.191;VQSLOD=18.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,42:87:99:1072,0,1165
chr4	2746307	rs11728346	A	C	7763.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=0.965;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2639,246,0
chr4	2746898	rs762856	C	T	433.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=0.087;SOR=0.910;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:171,0,164
chr4	2747475	rs2341303	G	A	425.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=1.96;SOR=0.257;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:105,0,105
chr4	2749301	rs13105492	C	G	1208.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=5.549;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:342,27,0
chr4	2749838	rs17412860	T	C	411.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-2.820e-01;SOR=0.770;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:47:47,0,254
chr4	2822162	rs231401	G	A	346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.112e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.64;ReadPosRankSum=-1.140e-01;SOR=0.610;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:355,0,173
chr4	2822289	rs2239727	C	A	8187.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.490e-01;DB;DP=108;ExcessHet=3.0103;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=1.01;SOR=0.622;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3521,324,0
chr4	2822467	rs231402	G	T	5279.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064e+00;DB;DP=88;ExcessHet=3.9794;FS=2.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.78;ReadPosRankSum=0.534;SOR=0.522;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,42:88:99:1072,0,1320
chr4	2822518	.	C	T	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.207e+00;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=-8.120e-01;SOR=0.869;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:465,0,664
chr4	2826218	rs34274570	C	CA	4248.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.510e-01;DB;DP=43;ExcessHet=3.0103;FS=1.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=0.859;SOR=0.510;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1730,129,0
chr4	2826400	rs3213501	T	C	23263.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.144e+00;DB;DP=254;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=-4.490e-01;SOR=0.236;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,254:254:99:7756,762,0
chr4	2828771	rs1794395	T	G	7808.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.25;DB;DP=67;ExcessHet=3.0103;FS=1.254;MQ=60.00;MQRankSum=0.00;QD=28.82;ReadPosRankSum=0.259;SOR=0.585;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,66:67:99:2144,162,0
chr4	2829077	rs2269485	T	C	9609.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.746e+00;DB;DP=109;ExcessHet=3.0103;FS=0.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=-5.120e-01;SOR=0.794;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3768,327,0
chr4	2829478	rs13137906	G	C	7461.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=94;ExcessHet=3.0103;FS=5.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.16;ReadPosRankSum=0.261;SOR=0.318;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,93:94:99:3609,239,0
chr4	2831383	rs231399	T	G	13611.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.490e-01;DB;DP=168;ExcessHet=3.0103;FS=3.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=-8.040e-01;SOR=0.436;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,168:168:99:5505,504,0
chr4	2833128	rs2269484	G	A	1080.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.19;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=1.90;SOR=1.356;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:459,36,0
chr4	2833966	rs231396	G	A	6211.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.461e+00;DB;DP=154;ExcessHet=6.9897;FS=1.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=1.08;SOR=0.593;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,76:154:99:1864,0,2119
chr4	2901404	rs113084553	A	G	246.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=12;ExcessHet=3.0103;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=0.864;SOR=2.419;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:255,0,129
chr4	2928125	rs1263345	C	T	6148.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.86;SOR=1.933;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1668,146,0
chr4	2928223	rs34209081	C	T	489.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=31;ExcessHet=3.0103;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=0.198;SOR=0.645;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:498,0,484
chr4	2928413	rs4964	T	C	5604.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.97;SOR=1.249;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1732,177,0
chr4	2928677	.	T	C	38	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=19.00;SOR=0.693;VQSLOD=13.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	2932401	rs3034869	GAGTA	G	183.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.00;SOR=0.551;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:192,0,334
chr4	2933271	rs1263348	G	A	17136.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396e+00;DB;DP=284;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=0.469;SOR=0.671;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,147:284:99:3863,0,3571
chr4	2934308	rs1263349	G	A	50246.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200e+00;DB;DP=560;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=1.44;SOR=0.105;VQSLOD=6.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,559:560:99:16986,1633,0
chr4	2935251	rs2301374	T	A	10162.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=1.152;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3149,337,0
chr4	2943361	rs1054090	T	C	1110.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.182;DB;DP=59;ExcessHet=3.9794;FS=0.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-6.610e-01;SOR=0.582;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,28:59:99:674,0,760
chr4	2943672	rs2960296	G	C	560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=18;ExcessHet=3.9794;FS=5.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=1.31;SOR=1.954;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:291,0,300
chr4	2946802	rs28474697	C	T	375.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DB;DP=19;ExcessHet=3.0103;FS=2.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=1.19;SOR=0.191;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:384,0,200
chr4	2948456	rs2488809	G	A	359.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=14;ExcessHet=3.9794;FS=1.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.00;SOR=1.130;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:167,0,262
chr4	2951519	rs2515961	A	G	49.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.92;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:57:57,0,106
chr4	2951804	rs2515960	A	G	9269.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=236;ExcessHet=1.5490;FS=0.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=-8.600e-01;SOR=0.752;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,106:236:99:2486,0,3046
chr4	2955145	rs1475977	T	C	1486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=0.231;SOR=0.620;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:518,0,612
chr4	2955192	rs1475976	C	G	1610.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=64;ExcessHet=3.9794;FS=1.355;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=1.23;SOR=0.575;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,28:64:99:645,0,920
chr4	2955465	rs1475975	T	C	1085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.82;SOR=0.651;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:529,0,458
chr4	2959672	rs2256086	A	G	570.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=27;ExcessHet=3.9794;FS=5.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-1.425e+00;SOR=0.211;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,7:27:99:199,0,609
chr4	2959765	rs1018789	C	T	263.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=1.83;SOR=0.392;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,134
chr4	2965611	rs13120295	G	C	1072.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714e+00;DB;DP=49;ExcessHet=3.9794;FS=3.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.521;SOR=0.357;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,23:49:99:649,0,800
chr4	2965676	rs16843684	C	T	3951.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.305;DB;DP=131;ExcessHet=3.9794;FS=3.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.96;ReadPosRankSum=-1.464e+00;SOR=0.520;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:63,68:131:99:0|1:2965676_C_T:2585,0,2767:2965676
chr4	2965695	rs10021191	G	A	4186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.820e-01;DB;DP=150;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=1.13;SOR=0.692;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:75,75:150:99:0|1:2965676_C_T:2811,0,3060:2965676
chr4	2965874	rs142156088	A	AC	426.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=-9.620e-01;QD=8.88;ReadPosRankSum=-1.538e+00;SOR=0.418;VQSLOD=-2.190e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,22:52:99:435,0,587
chr4	2965914	rs10030130	C	A	1305.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.618e+00;DB;DP=36;ExcessHet=3.9794;FS=3.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=0.443;SOR=0.174;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:516,0,689
chr4	2987219	rs2960309	G	A	167.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.389;SOR=0.446;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:176,0,246
chr4	2988636	rs2488815	C	T	769.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.033e+00;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=-1.912e+00;SOR=0.650;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,17:46:99:338,0,774
chr4	2988752	rs2471324	G	T	1112.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.486e+00;DB;DP=42;ExcessHet=3.9794;FS=2.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=1.79;SOR=1.053;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:522,0,677
chr4	2990291	rs2051557	A	C	232.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.83;ReadPosRankSum=0.967;SOR=1.402;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:75:81,0,75
chr4	2990303	rs140315626	A	AAACAAAC	268.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=0.967;SOR=1.022;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:75:81,0,75
chr4	2990338	rs2051556	G	T	663.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=0.820;SOR=1.255;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:260,0,113
chr4	2990375	rs2051555	G	A	906.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007e+00;DB;DP=28;ExcessHet=3.9794;FS=5.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=0.651;SOR=0.196;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:483,0,358
chr4	2990499	rs2960306	G	T	2665.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=122;ExcessHet=3.9794;FS=0.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=1.79;SOR=0.620;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,64:122:99:1605,0,1338
chr4	2993724	rs55983725	CA	C	88.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-5.240e-01;SOR=0.693;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:66:0|1:2993706_A_G:66,0,129:2993706
chr4	2993770	rs142185106	CT	C	382.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=0.545;SOR=0.793;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:240,0,106
chr4	2993791	rs2488817	G	C	521.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.81;ReadPosRankSum=1.04;SOR=0.223;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:14:99:253,0,203
chr4	2993980	rs2515941	T	C	1871.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=78;ExcessHet=3.9794;FS=2.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-1.590e-01;SOR=0.491;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,30:78:99:685,0,1099
chr4	2994107	rs2471338	T	G	705.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=3.9794;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=1.62;SOR=1.863;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:251,0,244
chr4	3011148	.	CAAA	C	229.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=8;ExcessHet=3.0103;FS=2.884;MQ=59.62;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=0.589;SOR=1.911;VQSLOD=0.451;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:8:67:67,0,154
chr4	3024044	rs2471325	C	T	916.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-01;DB;DP=29;ExcessHet=3.9794;FS=1.235;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=1.80;SOR=1.022;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:459,0,394
chr4	3029588	rs2857844	G	A	2647.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.75;DB;DP=43;ExcessHet=1.5490;FS=2.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=-1.166e+00;SOR=0.443;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1438,129,0
chr4	3029916	rs2798282	A	G	513.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=0.674;SOR=3.912;VQSLOD=17.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:25:188,0,25
chr4	3039150	rs1801058	T	C	5664.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;DB;DP=169;ExcessHet=6.9897;FS=1.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=1.15;SOR=0.853;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,86:169:99:2135,0,1929
chr4	3039310	rs113383212	C	CTG	264.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.37;ReadPosRankSum=-2.820e-01;SOR=0.859;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:74:0|1:3039310_C_CTG:273,0,74:3039310
chr4	3039311	rs2071689	C	T	915.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=9;ExcessHet=6.9897;FS=2.140;MQ=60.00;MQRankSum=0.00;QD=16.36;ReadPosRankSum=-5.680e-01;SOR=0.195;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:74:0|1:3039310_C_CTG:273,0,74:3039310
chr4	3040012	rs3021124	G	A	592.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-02;DB;DP=36;ExcessHet=3.0103;FS=1.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=-1.600e-02;SOR=0.346;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,23:36:99:601,0,330
chr4	3040279	rs201765413	GA	G	308.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312e+00;DB;DP=28;ExcessHet=6.9897;FS=1.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.81;ReadPosRankSum=0.624;SOR=0.258;VQSLOD=6.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,10:28:99:165,0,376
chr4	3076405	rs13102260	G	A	743.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.677e+00;DB;DP=47;ExcessHet=3.0103;FS=1.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-5.010e-01;SOR=0.333;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:752,0,735
chr4	3076650	.	AGC	A	1240.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DP=72;ExcessHet=3.0103;FS=1.069;MQ=60.00;MQRankSum=0.00;QD=17.23;ReadPosRankSum=1.39;SOR=1.013;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,38:72:99:0|1:3076650_AGC_A:1249,0,1051:3076650
chr4	3076653	.	AGCAG	A	1240.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.538e+00;DP=71;ExcessHet=3.0103;FS=1.065;MQ=60.00;MQRankSum=0.00;QD=17.47;ReadPosRankSum=1.33;SOR=0.884;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,38:71:99:0|1:3076650_AGC_A:1249,0,1051:3076650
chr4	3076659	.	A	C	252.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172e+00;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.48;SOR=0.854;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,9:46:99:0|1:3076659_A_C:261,0,1336:3076659
chr4	3076662	rs61792465	A	C	252.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.48;SOR=0.854;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,9:46:99:0|1:3076659_A_C:261,0,1336:3076659
chr4	3076665	rs61792466	A	C	252.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.562e+00;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.48;ReadPosRankSum=1.73;SOR=0.854;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,9:46:99:0|1:3076659_A_C:261,0,1336:3076659
chr4	3076672	rs76533208	A	G	427.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.18;ReadPosRankSum=1.07;SOR=0.818;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,9:42:99:435,0,1280
chr4	3076693	.	G	GCCT	934.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DP=38;ExcessHet=3.0103;FS=1.986;MQ=60.00;MQRankSum=0.00;QD=24.59;ReadPosRankSum=-3.780e-01;SOR=0.307;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,24:38:99:0|1:3076650_AGC_A:943,0,473:3076650
chr4	3116847	rs1419036	A	G	816.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430e-01;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.906;SOR=0.821;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,35:56:99:825,0,433
chr4	3117579	rs17780797	T	C	413.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.46;SOR=4.804;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:430,30,0
chr4	3118116	rs2071655	T	G	233.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=2.584;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:250,21,0
chr4	3142528	rs363072	A	T	1278.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=38;ExcessHet=3.9794;FS=4.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=2.63;SOR=0.425;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:546,0,430
chr4	3147109	rs363106	C	T	178.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.464;SOR=0.892;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:187,0,115
chr4	3148276	rs6855981	G	A	108.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.08;SOR=2.833;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr4	3156344	rs363101	T	C	268.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.226;SOR=0.495;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:277,0,172
chr4	3161846	rs363141	T	C	299.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=0.043;SOR=1.781;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:308,0,275
chr4	3162056	rs363099	C	T	1158.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093e+00;DB;DP=109;ExcessHet=3.0103;FS=6.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.269;SOR=1.058;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,47:109:99:1167,0,1678
chr4	3173834	rs6446725	A	G	55.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=-3.190e-01;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:64:64,0,184
chr4	3174256	rs363098	T	C	471.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=1.75;SOR=0.551;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:480,0,440
chr4	3174496	rs11276773	TGATTCACA	T	532.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=-7.700e-02;SOR=0.693;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:541,0,1274
chr4	3174971	rs3025836	G	T	113.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-1.074e+00;SOR=0.269;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:122,0,304
chr4	3180021	rs363096	T	C	1662.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=2.608;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1679,144,0
chr4	3180283	rs363095	G	A	279.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e-01;DB;DP=17;ExcessHet=3.0103;FS=3.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.684;SOR=0.132;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:288,0,233
chr4	3184229	rs363094	A	G	250.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DB;DP=23;ExcessHet=3.0103;FS=7.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-9.450e-01;SOR=2.584;VQSLOD=17.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:259,0,359
chr4	3188265	rs363093	C	T	2250.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.490e-01;DB;DP=176;ExcessHet=3.0103;FS=1.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.553e+00;SOR=0.810;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,98:176:99:2259,0,1807
chr4	3189187	rs113866615	G	T	56.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,117
chr4	3189547	rs363125	C	A	942.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.321e+00;DB;DP=67;ExcessHet=3.0103;FS=7.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.929;SOR=0.182;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,35:67:99:951,0,1008
chr4	3210330	rs363088	A	T	97.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.949;SOR=0.693;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:106,0,142
chr4	3210446	.	TA	T	158.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.679;DP=40;ExcessHet=6.9897;FS=1.290;MQ=60.00;MQRankSum=0.00;QD=1.53;ReadPosRankSum=0.046;SOR=0.401;VQSLOD=5.28;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,7:40:61:0|1:3210446_TA_T:61,0,934:3210446
chr4	3210456	rs3025825	A	C	534.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.90;ReadPosRankSum=0.794;SOR=0.684;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,22:49:99:1|0:3210446_TA_T:543,0,805:3210446
chr4	3213832	rs362336	G	A	401.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.591e+00;DB;DP=38;ExcessHet=3.0103;FS=3.633;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=0.712;SOR=0.242;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:410,0,862
chr4	3213875	rs362278	T	C	605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=28;ExcessHet=3.0103;FS=1.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=-6.240e-01;SOR=1.329;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,18:28:99:614,0,276
chr4	3213949	.	A	G	424.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.417;DP=31;ExcessHet=3.0103;FS=3.256;MQ=60.00;MQRankSum=0.00;QD=13.69;ReadPosRankSum=0.850;SOR=0.275;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:433,0,444
chr4	3215835	rs362331	T	C	4227.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.76;SOR=0.821;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4244,439,0
chr4	3216815	rs916171	C	G	1085.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=1.911;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1102,95,0
chr4	3219326	rs362325	T	C	167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=-1.016e+00;SOR=0.693;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:176,0,164
chr4	3219613	rs2857790	A	C	8860.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.09;SOR=1.879;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2770,246,0
chr4	3221872	rs362276	C	G	2020.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DB;DP=143;ExcessHet=3.0103;FS=0.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=1.92;SOR=0.780;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,78:143:99:2029,0,1573
chr4	3223891	rs2071662	T	C	259.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=4.174;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:276,21,0
chr4	3224933	rs362319	T	G	544.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=5.670;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:561,48,0
chr4	3225371	rs82334	A	C	820.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-1.068e+00;SOR=0.743;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:829,0,682
chr4	3225389	rs82333	A	G	1360.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=2.476;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1377,123,0
chr4	3225466	rs82332	A	G	406.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=16;ExcessHet=3.0103;FS=2.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=0.426;SOR=0.223;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:84:415,0,84
chr4	3225478	rs110501	T	C	463.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.55;SOR=1.609;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:480,39,0
chr4	3227419	rs362273	A	G	1048.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=90;ExcessHet=3.0103;FS=3.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-2.930e-01;SOR=0.888;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,39:90:99:1057,0,1259
chr4	3227592	rs2276882	T	A	1765.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.97;SOR=1.342;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1782,171,0
chr4	3234828	rs2269478	G	T	927.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.05;ReadPosRankSum=0.602;SOR=5.136;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,25:26:68:944,68,0
chr4	3234980	rs362272	G	A	4637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DB;DP=373;ExcessHet=3.0103;FS=4.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=1.38;SOR=0.513;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:178,195:373:99:4646,0,4167
chr4	3235184	rs3216820	GC	G	9675.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.747;DB;DP=176;ExcessHet=1.5490;FS=0.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=0.842;SOR=0.768;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,176:176:99:6593,530,0
chr4	3235241	rs362314	A	G	3096.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.70;SOR=5.892;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:3113,234,0
chr4	3236881	rs2798230	T	G	1682.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=4.977;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:3236881_T_G:495,33,0:3236881
chr4	3236883	rs2858082	A	G	1682.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=5.031;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:3236881_T_G:495,33,0:3236881
chr4	3237644	rs362312	T	C	250.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728e+00;DB;DP=13;ExcessHet=3.0103;FS=9.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=0.895;SOR=0.392;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:259,0,123
chr4	3240159	rs2071704	C	T	1649.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.71;SOR=2.215;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1666,156,0
chr4	3240526	rs2858081	A	G	4628.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.03;SOR=1.662;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1607,147,0
chr4	3240737	rs141241599	G	A	1721.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DB;DP=136;ExcessHet=3.0103;FS=4.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.444;SOR=0.437;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,69:136:99:1730,0,1774
chr4	3240915	rs362309	G	C	608.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=59.27;POSITIVE_TRAIN_SITE;QD=30.22;SOR=4.294;VQSLOD=4.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:624,51,0
chr4	3241413	rs2071703	A	C	347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.80;ReadPosRankSum=-7.010e-01;SOR=0.275;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:82:356,0,82
chr4	3248683	rs80109232	C	T	357.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.580e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=-1.675e+00;SOR=0.368;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:366,0,290
chr4	3250754	rs2530594	A	G	976.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=3.258;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:453,39,0
chr4	3254767	rs3129321	T	A	538.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.42;SOR=3.126;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:555,45,0
chr4	3255258	rs2798227	A	G	2027.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.425;SOR=0.618;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,67:128:99:2036,0,1801
chr4	3255292	rs2798226	C	T	1231.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=-1.568e+00;SOR=0.542;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,43:78:99:1240,0,1003
chr4	3257373	rs3135173	T	C	516.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=32;ExcessHet=3.0103;FS=3.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-6.230e-01;SOR=1.402;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,20:32:99:525,0,234
chr4	3257593	rs362287	C	T	1093.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=77;ExcessHet=3.0103;FS=1.866;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=1.23;SOR=0.929;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,45:77:99:1102,0,707
chr4	3263138	rs3095073	G	A	1486.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=120;ExcessHet=3.0103;FS=0.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.21;SOR=0.831;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,60:120:99:1495,0,1455
chr4	3263325	rs3095072	G	A	197.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-1.540e-01;SOR=0.169;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:206,0,217
chr4	3265381	rs3129319	A	G	119.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=0.524;SOR=1.981;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:128,0,25
chr4	3265414	rs3095079	C	T	247.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:51:256,0,51
chr4	3265479	rs3095078	C	T	302.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=23;ExcessHet=3.0103;FS=1.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.554;SOR=1.296;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:311,0,312
chr4	3265710	rs3095077	C	T	606.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=64;ExcessHet=3.0103;FS=2.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=-2.010e-01;SOR=1.071;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,24:64:99:615,0,996
chr4	3318413	rs2236052	A	G	6285.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.763e+00;DB;DP=65;ExcessHet=3.0103;FS=1.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.205;SOR=0.852;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:699,0,1093
chr4	3319271	rs10006362	C	T	13185.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=354;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.243;SOR=0.664;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:182,172:354:99:4272,0,4674
chr4	3372263	rs6826720	A	G	503.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=15;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-1.037e+00;SOR=0.846;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:331,0,188
chr4	3415336	rs62274930	C	T	68.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:77,0,33
chr4	3415378	rs16844301	A	G	138.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.829e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=0.398;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:147,0,165
chr4	3417845	rs3213507	G	C	1504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-01;DB;DP=129;ExcessHet=3.0103;FS=0.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.146;SOR=0.609;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,64:129:99:1513,0,1561
chr4	3425030	rs58143210	C	T	304.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=-3.020e-01;SOR=0.184;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:313,0,277
chr4	3429856	rs2269497	A	G	516.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.53;ReadPosRankSum=0.821;SOR=0.723;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,22:79:99:525,0,1568
chr4	3443917	rs10024987	G	C	1139.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232e+00;DB;DP=88;ExcessHet=3.0103;FS=0.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-3.090e-01;SOR=0.846;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,46:88:99:0|1:3443917_G_C:1148,0,2330:3443917
chr4	3443931	rs13108218	A	G	2594.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=80;ExcessHet=3.9794;FS=1.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=0.270;SOR=0.524;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,44:80:99:0|1:3443917_G_C:1669,0,926:3443917
chr4	3444593	rs2073504	G	A	2046.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=85;ExcessHet=3.9794;FS=2.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=1.62;SOR=0.940;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,35:85:99:840,0,1375
chr4	3445325	rs75857104	C	T	220.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=1.47;SOR=2.584;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:22:229,0,22
chr4	3445745	rs4690097	C	T	6835.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=135;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=1.14;SOR=0.524;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,57:135:99:1474,0,1905
chr4	3446132	rs1987546	C	G	5642.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=106;ExcessHet=3.9794;FS=0.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=1.21;SOR=0.607;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,53:106:99:1534,0,1411
chr4	3446751	rs3752439	T	C	2144.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338e+00;DB;DP=85;ExcessHet=3.9794;FS=0.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=2.02;SOR=0.796;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1061,0,977
chr4	3446820	rs3752441	C	T	713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=36;ExcessHet=3.0103;FS=10.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=-9.600e-02;SOR=0.251;VQSLOD=18.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:722,0,428
chr4	3447243	rs16844383	C	T	665.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e-02;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-2.075e+00;SOR=0.817;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,26:43:99:674,0,387
chr4	3447311	rs6813378	C	T	265.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.908e+00;DB;DP=27;ExcessHet=3.0103;FS=1.596;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-7.410e-01;SOR=1.115;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:274,0,528
chr4	3449145	rs60265667	CAG	C	2194.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.30;ReadPosRankSum=-2.560e-01;SOR=0.901;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,56:103:99:2203,0,1963
chr4	3449886	rs28468427	G	A	1062.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.153e+00;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.307;SOR=0.650;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,45:94:99:1071,0,1320
chr4	3475107	rs2344208	G	C	1829.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=56;ExcessHet=3.9794;FS=0.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=1.31;SOR=0.619;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,32:56:99:844,0,539
chr4	3475252	rs4325970	T	C	11273.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.59;SOR=0.709;VQSLOD=19.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:4532,465,0
chr4	3475406	rs57204641	G	T	535.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e-02;DB;DP=26;ExcessHet=3.0103;FS=2.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=0.844;SOR=1.329;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:544,0,298
chr4	3478323	rs2699426	T	C	1658.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.850e-01;DB;DP=52;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=1.53;SOR=0.754;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,22:52:99:514,0,778
chr4	3487099	rs28706421	A	G	850.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.050e-01;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=0.816;SOR=0.772;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,16:41:99:395,0,690
chr4	3487151	rs916189	A	G	4976.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=97;ExcessHet=1.5490;FS=2.360;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=-2.302e+00;SOR=0.981;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1285,0,1200
chr4	3487196	rs73080946	T	C	2066.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=170;ExcessHet=3.0103;FS=1.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=2.03;SOR=0.577;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,83:170:99:2075,0,2076
chr4	3487237	rs2006791	A	G	8877.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=210;ExcessHet=1.5490;FS=0.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=1.80;SOR=0.606;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,105:210:99:2557,0,2390
chr4	3491139	rs743717	G	A	65.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-1.890e-01;SOR=2.093;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:74:74,0,99
chr4	3491504	rs59932476	G	A	1269.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620e-01;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=3.04;SOR=0.684;VQSLOD=21.70;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:86,58:144:99:1278,0,2135
chr4	3491721	rs2699418	T	C	401.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=1.03;SOR=0.507;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:164,15,0
chr4	3494449	rs34230391	AC	A	2764.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=121;ExcessHet=3.9794;FS=1.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=1.23;SOR=0.597;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:69,52:121:99:1323,0,1888
chr4	3494956	rs16844464	C	T	4993.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e+00;DB;DP=446;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=1.31;SOR=0.676;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:240,206:446:99:5002,0,6290
chr4	3495283	rs11733064	C	G	4463.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353e+00;DB;DP=98;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=0.538;SOR=0.684;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,52:98:99:1489,0,1294
chr4	3495446	rs10022432	C	T	170.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=0.674;SOR=2.833;VQSLOD=19.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:108,0,26
chr4	3498448	rs3135164	T	C	3571.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=153;ExcessHet=3.9794;FS=2.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=2.56;SOR=0.824;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,80:153:99:2053,0,1820
chr4	3498624	rs13130443	G	A	1860.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328e+00;DB;DP=69;ExcessHet=3.9794;FS=0.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.071;SOR=0.825;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:1009,0,967
chr4	3501782	rs113597595	TG	T	453.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.449;SOR=0.512;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,9:14:99:232,0,110
chr4	3501835	rs2858035	C	A	1212.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=37;ExcessHet=3.9794;FS=6.662;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.749;SOR=0.178;VQSLOD=5.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,27:37:99:718,0,291
chr4	3501849	rs2699409	T	C	2933.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830e+00;DB;DP=54;ExcessHet=1.5490;FS=11.719;MQ=59.90;MQRankSum=-7.290e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.48;ReadPosRankSum=1.77;SOR=0.089;VQSLOD=-7.932e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,34:54:99:955,0,678
chr4	3501873	rs2699408	T	C	1994.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DB;DP=82;ExcessHet=3.9794;FS=4.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=3.11;SOR=0.404;VQSLOD=21.90;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1162,0,1024
chr4	3501924	rs2858036	A	G	3376.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=133;ExcessHet=3.9794;FS=4.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-5.080e-01;SOR=0.486;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,71:133:99:1694,0,1574
chr4	3502163	rs2858037	A	G	2691.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.220e+00;DB;DP=51;ExcessHet=1.5490;FS=2.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-9.000e-01;SOR=0.439;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,23:51:99:602,0,799
chr4	3502303	rs2071700	G	C	928.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345e+00;DB;DP=23;ExcessHet=3.9794;FS=2.352;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=1.70;SOR=1.056;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:408,0,278
chr4	3502657	rs2003807	T	C	475.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=0.100;SOR=1.739;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:186,0,179
chr4	3514689	rs1800495	T	C	1767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.930e-01;DB;DP=68;ExcessHet=3.0103;FS=3.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=-1.393e+00;SOR=0.333;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,44:68:99:0|1:3514689_T_C:1776,0,1371:3514689
chr4	3514695	rs6789	A	G	2650.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=72;ExcessHet=3.9794;FS=3.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=1.05;SOR=0.459;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,46:72:99:0|1:3514689_T_C:1826,0,1428:3514689
chr4	3514938	rs1741553	A	G	1018.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=24;ExcessHet=1.5490;FS=7.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-1.160e-01;SOR=2.569;VQSLOD=18.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:411,0,273
chr4	3516369	rs1794441	G	A	1392.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.807e+00;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.02;ReadPosRankSum=1.13;SOR=2.208;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:432,0,437
chr4	3516689	rs2515967	T	C	21811.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.51;SOR=1.917;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5548,478,0
chr4	3516742	rs1794442	A	G	5152.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.750e-01;DB;DP=72;ExcessHet=1.5490;FS=15.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.13;ReadPosRankSum=-6.310e-01;SOR=2.613;VQSLOD=11.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,36:72:99:1239,0,1103
chr4	3517732	rs1794444	G	C	2659.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=126;ExcessHet=3.9794;FS=12.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-6.160e-01;SOR=1.404;VQSLOD=16.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,45:126:99:1256,0,2155
chr4	3519617	rs2498328	G	C	451.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=5.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=0.00;SOR=3.334;VQSLOD=16.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:100,0,96
chr4	3520097	rs11282683	C	CCAGGCGAGA	1232.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030e-01;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.25;ReadPosRankSum=0.570;SOR=1.455;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:355,0,599
chr4	3521939	rs1741547	T	A	2507.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880e-01;DB;DP=74;ExcessHet=3.9794;FS=2.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.292;SOR=0.511;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,39:74:99:1028,0,867
chr4	3522160	rs74618629	G	A	98.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.598;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,109
chr4	3526645	rs11549516	C	T	1918.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.950e-01;DB;DP=165;ExcessHet=3.0103;FS=1.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.65;SOR=0.870;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,75:165:99:1927,0,2426
chr4	3533760	rs1730783	G	A	125.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=1.30;SOR=0.330;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:134,0,270
chr4	3589560	rs10937958	A	G	1349.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.89;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.53;ReadPosRankSum=1.95;SOR=0.668;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:251,0,261
chr4	3589623	rs10937959	G	A	3235.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.925e+00;DB;DP=40;ExcessHet=6.9897;FS=3.032;MQ=60.00;MQRankSum=0.00;QD=15.71;ReadPosRankSum=-4.000e-01;SOR=1.058;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:503,0,816
chr4	3589689	rs7657417	C	A	8424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.983;DB;DP=138;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.58;ReadPosRankSum=0.993;SOR=0.656;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:78,60:138:99:0|1:3589689_C_A:2221,0,3185:3589689
chr4	3589719	rs59190481	CA	C	21886.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;DB;DP=203;ExcessHet=3.9794;FS=1.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=-5.000e-01;SOR=0.829;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:110,93:203:99:0|1:3589689_C_A:3300,0,4077:3589689
chr4	3589846	rs7672828	T	C	9638.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=225;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.99;ReadPosRankSum=-6.980e-01;SOR=0.698;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,112:225:99:2777,0,2874
chr4	3589990	rs7658013	C	T	2223.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.214e+00;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.53;ReadPosRankSum=-4.160e-01;SOR=0.796;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:490,0,631
chr4	3590029	rs7658178	C	T	1035.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.26;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.94;ReadPosRankSum=0.346;SOR=0.555;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:166,0,228
chr4	3590462	rs73072421	C	T	355.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.73;ReadPosRankSum=1.28;SOR=0.317;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:65:157,0,65
chr4	3590475	rs73072422	C	T	330.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.55;ReadPosRankSum=1.83;SOR=0.188;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:118,0,105
chr4	3590496	rs73072424	G	T	390.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=10;ExcessHet=6.9897;FS=3.358;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=1.09;SOR=0.148;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:150,0,193
chr4	3590537	rs73199384	G	C	625.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.72;MQRankSum=0.00;QD=16.92;ReadPosRankSum=-1.465e+00;SOR=0.643;VQSLOD=3.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:144,0,234
chr4	3590549	rs73793633	G	A	830.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.82;MQRankSum=0.00;QD=13.85;ReadPosRankSum=0.317;SOR=0.796;VQSLOD=4.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:152,0,370
chr4	3590577	rs73793634	G	A	1299.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=21;ExcessHet=6.9897;FS=4.639;MQ=59.89;MQRankSum=0.00;QD=13.83;ReadPosRankSum=-2.940e-01;SOR=1.461;VQSLOD=4.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,5:21:99:151,0,691
chr4	3590588	rs73199385	A	C	1467.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.90;MQRankSum=0.00;QD=13.98;ReadPosRankSum=-5.910e-01;SOR=0.793;VQSLOD=4.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,8:24:99:262,0,519
chr4	3590683	rs62272966	T	G	4022.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120e-01;DB;DP=84;ExcessHet=6.9897;FS=0.445;MQ=60.00;MQRankSum=0.00;QD=14.84;ReadPosRankSum=-1.360e-01;SOR=0.661;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:48,36:84:99:0|1:3590683_T_G:1314,0,3614:3590683
chr4	3590711	rs62272967	G	T	3889.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=82;ExcessHet=6.9897;FS=0.470;MQ=60.00;MQRankSum=0.00;QD=15.62;ReadPosRankSum=0.00;SOR=0.742;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,35:82:99:0|1:3590683_T_G:1327,0,3656:3590683
chr4	3590730	rs62272968	G	A	3547.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=76;ExcessHet=6.9897;FS=2.292;MQ=60.00;MQRankSum=0.00;QD=15.23;ReadPosRankSum=-2.470e-01;SOR=0.873;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,33:76:99:0|1:3590683_T_G:1319,0,3470:3590683
chr4	3590817	rs62272969	T	C	2043.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.387e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=15.03;ReadPosRankSum=-1.225e+00;SOR=0.672;VQSLOD=4.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,14:33:99:398,0,944
chr4	3590823	rs66807249	GACAC	G	4369.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=-5.820e-01;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=-9.510e-01;SOR=0.950;VQSLOD=1.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,21:30:99:837,0,377
chr4	3590878	rs62272970	C	T	3378.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.590e-01;DB;DP=51;ExcessHet=6.9897;FS=1.155;MQ=60.00;MQRankSum=0.00;QD=17.24;ReadPosRankSum=0.642;SOR=0.597;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,18:51:99:0|1:3590878_C_T:695,0,1459:3590878
chr4	3590911	rs34447251	A	C	3121.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=65;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-4.950e-01;SOR=0.709;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,29:65:99:0|1:3590878_C_T:1016,0,1503:3590878
chr4	3591015	rs62272971	A	C	4494.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007e+00;DB;DP=137;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.36;ReadPosRankSum=-5.430e-01;SOR=0.677;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,70:137:99:1701,0,1878
chr4	3591049	rs62272972	C	T	7050.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.500e-02;DB;DP=153;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.26;ReadPosRankSum=0.320;SOR=0.737;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:80,73:153:99:0|1:3591049_C_T:2733,0,3906:3591049
chr4	3591069	rs62272973	C	T	6721.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=152;ExcessHet=6.9897;FS=1.130;MQ=60.00;MQRankSum=0.00;QD=14.77;ReadPosRankSum=0.328;SOR=0.592;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:84,68:152:99:0|1:3591049_C_T:2531,0,3922:3591049
chr4	3591262	rs34792033	C	T	541.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.84;ReadPosRankSum=1.32;SOR=0.212;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,7:14:99:0|1:3591262_C_T:264,0,757:3591262
chr4	3591265	rs62272975	T	C	868.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.719e+00;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.49;ReadPosRankSum=-1.650e-01;SOR=0.653;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:3591262_C_T:231,0,760:3591262
chr4	3591271	rs62272976	A	G	836.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.625e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.93;ReadPosRankSum=0.611;SOR=0.606;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:3591262_C_T:234,0,688:3591262
chr4	3769789	rs11269124	G	GGGGGAGCTTTCCCAGAGACCC	2951.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=49;ExcessHet=1.5490;FS=3.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.75;ReadPosRankSum=-5.870e-01;SOR=1.484;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2265,144,0
chr4	3891609	rs75545558	G	A	3876.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.352e+00;DB;DP=73;ExcessHet=3.9794;FS=7.134;MQ=49.86;MQRankSum=-7.794e+00;QD=11.47;ReadPosRankSum=2.05;SOR=0.792;VQSLOD=-4.294e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2082,219,0
chr4	3891822	rs28491430	G	T	655.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.797;DB;DP=36;ExcessHet=3.9794;FS=6.239;MQ=39.57;MQRankSum=-8.790e-01;QD=8.51;ReadPosRankSum=2.07;SOR=0.969;VQSLOD=-4.772e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:276,0,653
chr4	3903553	rs62289209	G	A	385.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=58.84;MQRankSum=-3.660e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.15;ReadPosRankSum=0.00;SOR=2.670;VQSLOD=-7.180e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr4	3949496	.	C	T	743.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=47;ExcessHet=3.0103;FS=4.417;MQ=56.02;MQRankSum=-2.933e+00;NEGATIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=1.71;SOR=1.278;VQSLOD=-2.120e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,30:47:99:752,0,377
chr4	3955064	rs34343469	G	A	1817.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=24;ExcessHet=3.0103;FS=4.712;MQ=59.67;MQRankSum=0.00;QD=28.40;ReadPosRankSum=0.462;SOR=2.147;VQSLOD=1.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:788,71,0
chr4	3955090	rs34468893	G	A	941.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.862;DB;DP=16;ExcessHet=3.9794;FS=3.550;MQ=59.50;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=-3.020e-01;SOR=1.523;VQSLOD=2.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:554,48,0
chr4	4075863	rs9759581	C	G	461.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=51.61;MQRankSum=-1.383e+00;NEGATIVE_TRAIN_SITE;QD=28.84;ReadPosRankSum=0.282;SOR=0.693;VQSLOD=-2.697e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:310,21,0
chr4	4158620	rs35462216	A	T	442.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.109e+00;DB;DP=51;ExcessHet=3.0103;FS=4.012;MQ=54.36;MQRankSum=-6.649e+00;QD=8.67;ReadPosRankSum=-5.020e-01;SOR=1.312;VQSLOD=-3.744e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,20:51:99:451,0,920
chr4	4158885	rs9714982	G	A	1701.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-02;DB;DP=119;ExcessHet=3.0103;FS=2.376;MQ=57.56;MQRankSum=-7.440e-01;NEGATIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-1.540e+00;SOR=0.986;VQSLOD=-2.227e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,66:119:99:1710,0,1313
chr4	4190511	.	G	GTCACTTGTTA	58.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.13;MQRankSum=0.00;QD=2.79;ReadPosRankSum=-5.390e-01;SOR=0.385;VQSLOD=5.25;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,1:13:40:0|1:4190507_C_CTTG:40,0,738:4190507
chr4	4190576	rs199742451	C	G	229.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=57.22;MQRankSum=-4.579e+00;NEGATIVE_TRAIN_SITE;QD=2.76;ReadPosRankSum=2.22;SOR=0.473;VQSLOD=-4.072e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,7:49:99:0|1:4190576_C_G:165,0,1784:4190576
chr4	4190577	rs200368405	G	C	229.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=57.25;MQRankSum=-4.579e+00;NEGATIVE_TRAIN_SITE;QD=2.73;ReadPosRankSum=2.33;SOR=0.459;VQSLOD=-4.115e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,7:49:99:0|1:4190576_C_G:165,0,1784:4190576
chr4	4228008	rs1811445	A	G	411.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=0.00;QD=13.26;ReadPosRankSum=0.342;SOR=0.871;VQSLOD=4.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,7:16:99:0|1:4228008_A_G:243,0,808:4228008
chr4	4228029	rs36055674	A	AAAG	2019.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=22.70;ReadPosRankSum=0.863;SOR=0.649;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,10:33:99:0|1:4228008_A_G:330,0,1431:4228008
chr4	4238746	rs57797443	T	G	1889.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=57.19;MQRankSum=0.845;QD=15.36;ReadPosRankSum=0.017;SOR=0.644;VQSLOD=-1.648e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,36:51:99:958,0,327
chr4	4238906	rs34548596	A	AT	454.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=22;ExcessHet=3.9794;FS=1.547;MQ=60.00;MQRankSum=0.00;QD=12.98;ReadPosRankSum=0.599;SOR=1.101;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,15:22:99:359,0,144
chr4	4238922	rs12498280	A	G	615.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=20;ExcessHet=3.9794;FS=1.713;MQ=60.00;MQRankSum=0.00;QD=18.64;ReadPosRankSum=0.912;SOR=1.329;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:449,0,161
chr4	4239044	rs12512103	C	T	121.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=55.14;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=0.674;SOR=0.223;VQSLOD=-2.419e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:62,0,34
chr4	4239402	rs62286912	T	C	1609.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808e+00;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=53.21;MQRankSum=-3.624e+00;NEGATIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-1.681e+00;SOR=0.746;VQSLOD=-3.382e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:546,0,438
chr4	4239516	rs62286913	C	T	4852.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.750e-01;DB;DP=94;ExcessHet=6.9897;FS=4.156;MQ=53.59;MQRankSum=-6.651e+00;QD=17.78;ReadPosRankSum=-1.030e-01;SOR=0.497;VQSLOD=-3.418e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,45:94:99:0|1:4239516_C_T:1627,0,2291:4239516
chr4	4239539	rs62286914	C	T	4318.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-01;DB;DP=87;ExcessHet=6.9897;FS=5.088;MQ=53.97;MQRankSum=-6.337e+00;QD=16.94;ReadPosRankSum=-7.860e-01;SOR=0.453;VQSLOD=-2.712e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,38:87:99:0|1:4239516_C_T:1483,0,2368:4239516
chr4	4239697	rs199946463	C	A	124.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e-01;DB;DP=27;ExcessHet=3.0103;FS=2.382;MQ=53.92;MQRankSum=-2.484e+00;NEGATIVE_TRAIN_SITE;QD=4.62;ReadPosRankSum=2.16;SOR=1.524;VQSLOD=-2.979e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,6:27:99:131,0,812
chr4	4241953	rs3817719	T	A	936.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=7;ExcessHet=6.9897;FS=2.760;MQ=60.00;MQRankSum=0.00;QD=22.31;ReadPosRankSum=-3.280e-01;SOR=0.257;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:142,0,103
chr4	4249297	rs2916469	C	T	8887.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828e+00;DB;DP=95;ExcessHet=3.9794;FS=4.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.60;ReadPosRankSum=0.717;SOR=0.978;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:55,40:95:99:0|1:4249297_C_T:1554,0,3274:4249297
chr4	4249300	rs2916468	T	C	8976.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.463;DB;DP=99;ExcessHet=3.9794;FS=5.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=0.086;SOR=1.010;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,42:99:99:0|1:4249297_C_T:1554,0,3274:4249297
chr4	4249414	rs2980101	A	G	15943.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=182;ExcessHet=3.9794;FS=1.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=-1.900e-01;SOR=0.594;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:95,87:182:99:0|1:4249414_A_G:3367,0,3661:4249414
chr4	4249415	rs2916467	T	C	15943.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.578;DB;DP=180;ExcessHet=3.9794;FS=1.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=-4.370e-01;SOR=0.563;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:93,87:180:99:0|1:4249414_A_G:3367,0,3661:4249414
chr4	4249483	rs2916466	C	T	14286.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.740e-01;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=-1.080e-01;SOR=0.884;VQSLOD=7.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:4315,339,0
chr4	4249484	rs2916465	A	C	8542.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064e+00;DB;DP=113;ExcessHet=3.9794;FS=0.975;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=0.350;SOR=0.620;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,56:113:99:1300,0,1519
chr4	4249620	rs2916464	T	C	1782.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=21;ExcessHet=3.9794;FS=6.021;MQ=59.78;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=0.891;SOR=1.708;VQSLOD=5.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:250,0,311
chr4	4249855	rs2272747	G	A	1735.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913e+00;DB;DP=59;ExcessHet=3.9794;FS=7.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.672;SOR=0.276;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,33:59:99:913,0,731
chr4	4249909	rs2272746	C	T	3220.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880e-01;DB;DP=97;ExcessHet=6.9897;FS=2.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.072;SOR=0.568;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1204,0,1179
chr4	4249974	rs2272745	C	A	6975.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=110;ExcessHet=3.9794;FS=0.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=-5.740e-01;SOR=0.661;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,55:110:99:1347,0,1258
chr4	4250133	rs2272744	G	C	1977.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=17;ExcessHet=3.9794;FS=2.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=0.587;SOR=0.260;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:369,0,240
chr4	4275976	rs11723469	A	C	2239.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.600e-01;DB;DP=33;ExcessHet=1.5490;FS=3.241;MQ=60.00;MQRankSum=0.00;QD=29.09;ReadPosRankSum=0.423;SOR=1.402;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:4275976_A_C:1443,99,0:4275976
chr4	4275986	rs11723471	A	C	2506.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.010e-01;DB;DP=38;ExcessHet=1.5490;FS=4.075;MQ=60.00;MQRankSum=0.00;QD=27.25;ReadPosRankSum=0.573;SOR=1.365;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:4275976_A_C:1625,117,0:4275976
chr4	4276132	rs7376390	T	C	15244.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.520e-01;DB;DP=166;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.24;ReadPosRankSum=1.14;SOR=0.341;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,165:166:99:5077,459,0
chr4	4285221	rs2980214	A	C	3499.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=35.00;SOR=2.765;VQSLOD=5.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1049,93,0
chr4	4301421	rs3985	T	C	95.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=2.833;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:108,9,0
chr4	4301502	rs376790924	AG	A	982.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e-01;DB;DP=8;ExcessHet=3.9794;FS=5.643;MQ=60.00;MQRankSum=0.00;QD=29.79;ReadPosRankSum=0.769;SOR=3.461;VQSLOD=3.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr4	4301505	.	TG	T	950.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DP=9;ExcessHet=6.9897;FS=5.315;MQ=60.00;MQRankSum=0.00;QD=27.96;SOR=3.258;VQSLOD=4.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,8:9:18:333,0,18
chr4	4301535	rs60878128	T	A	248.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.58;ReadPosRankSum=0.589;SOR=3.056;VQSLOD=18.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:18:257,0,18
chr4	4301537	rs60953649	T	A	1116.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.92;DB;DP=9;ExcessHet=3.9794;FS=10.590;MQ=60.00;MQRankSum=0.00;QD=31.91;ReadPosRankSum=1.49;SOR=4.125;VQSLOD=11.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:9:37:532,37,0
chr4	4301967	rs73195806	T	G	644.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.697e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.80;ReadPosRankSum=1.74;SOR=1.697;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:418,33,0
chr4	4304337	rs2916382	C	T	10617.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.28;SOR=0.847;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3009,264,0
chr4	4304900	rs114864148	A	G	204.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.113e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=-1.846e+00;SOR=0.693;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:213,0,221
chr4	4315252	rs2920205	C	T	39.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.59;SOR=0.693;VQSLOD=16.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	4389279	.	G	C	708.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DP=27;ExcessHet=6.9897;FS=16.733;MQ=59.78;MQRankSum=-1.006e+00;NEGATIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=2.76;SOR=4.086;VQSLOD=-4.255e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,8:27:99:0|1:4389271_T_TG:207,0,603:4389271
chr4	4393068	rs3792686	T	C	627.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.9794;FS=1.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=0.00;SOR=1.143;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:145,0,142
chr4	4411166	rs7654880	T	C	1244.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.248e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=1.53;SOR=0.787;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:321,0,210
chr4	4422558	rs34931639	A	C	991.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=44;ExcessHet=3.9794;FS=4.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-1.200e-02;SOR=0.326;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:507,0,546
chr4	4425382	.	T	G	903.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.450e-01;DP=43;ExcessHet=3.0103;FS=1.572;MQ=60.00;MQRankSum=0.00;QD=21.01;ReadPosRankSum=-1.295e+00;SOR=0.342;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,33:43:99:912,0,188
chr4	4425422	rs10675705	C	CAG	2657.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.070e-01;DB;DP=33;ExcessHet=3.0103;FS=3.524;MQ=60.00;MQRankSum=0.00;QD=33.53;ReadPosRankSum=0.193;SOR=0.314;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1432,99,0
chr4	4787551	rs2933587	G	C	389.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=0.00;SOR=0.610;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,70
chr4	4861745	rs36059701	C	G	1225.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DB;DP=91;ExcessHet=3.0103;FS=1.808;MQ=60.00;MQRankSum=0.00;QD=13.46;ReadPosRankSum=-1.390e+00;SOR=0.476;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1234,0,1208
chr4	4862125	rs149370601	AGGGGGCCGGGT	A	11387.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=73;ExcessHet=3.0103;FS=12.210;MQ=59.97;MQRankSum=2.18;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=0.644;SOR=1.986;VQSLOD=0.139;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,60:73:99:2482,0,610
chr4	4864301	rs33946149	C	A	2709.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735e+00;DB;DP=245;ExcessHet=3.0103;FS=11.990;MQ=59.93;MQRankSum=-1.146e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.299;SOR=1.327;VQSLOD=-6.360e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:140,105:245:99:2718,0,4053
chr4	4864381	rs1042484	A	G	4639.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.058e+00;DB;DP=357;ExcessHet=3.0103;FS=2.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-8.220e-01;SOR=0.856;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:179,178:357:99:4648,0,4950
chr4	4864404	rs33929633	CT	C	4691.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.260e-01;DB;DP=412;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=1.85;SOR=0.712;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:213,199:412:99:4700,0,4937
chr4	4864876	rs8670	C	T	2348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.915e+00;DB;DP=151;ExcessHet=3.0103;FS=15.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.547;SOR=0.182;VQSLOD=12.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,96:151:99:2357,0,1498
chr4	5016841	rs6847131	G	T	1919.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=2.522;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:298,24,0
chr4	5016972	rs73198523	T	C	746.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798e+00;DB;DP=58;ExcessHet=3.0103;FS=1.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.149;SOR=0.489;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,32:58:99:755,0,663
chr4	5017146	rs67449859	A	AT	3774.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.23;SOR=2.275;VQSLOD=2.35;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,28:28:84:1|1:5017146_A_AT:1239,84,0:5017146
chr4	5017150	rs34659865	C	CATTTCA	3815.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.70;SOR=2.247;VQSLOD=6.12;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,28:28:84:1|1:5017146_A_AT:1239,84,0:5017146
chr4	5017232	rs34125699	ACT	A	1103.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.11;SOR=6.518;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr4	5018702	rs11724788	G	A	6342.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380e+00;DB;DP=83;ExcessHet=3.9794;FS=3.810;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=2.00;SOR=0.782;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,36:83:99:1031,0,1369
chr4	5020818	rs73198530	T	C	90.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.761;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.135;SOR=0.368;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:99,0,178
chr4	5021008	rs67468870	C	T	995.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DB;DP=105;ExcessHet=3.0103;FS=1.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=-4.380e-01;SOR=0.767;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,47:105:99:1004,0,1326
chr4	5128641	rs11726208	A	G	474.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=23;ExcessHet=3.9794;FS=12.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.798;SOR=0.037;VQSLOD=16.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,6:23:99:159,0,572
chr4	5128650	rs895679	T	C	3196.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=3.940;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:973,78,0
chr4	5128726	rs17882862	A	G	1243.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.979e+00;DB;DP=74;ExcessHet=3.0103;FS=1.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=-5.490e-01;SOR=0.536;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,51:74:99:1252,0,596
chr4	5142012	.	A	G	1246.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.049e+00;DP=84;ExcessHet=3.0103;FS=6.628;MQ=60.00;MQRankSum=0.00;QD=14.84;ReadPosRankSum=-5.560e-01;SOR=0.237;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,48:84:99:1255,0,1014
chr4	5169806	rs1447286	G	A	3317.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.825;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1250,126,0
chr4	5418383	rs2301858	G	A	665.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.576e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=0.00;SOR=0.379;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:146,0,181
chr4	5418539	rs168985	C	T	2991.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=73;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=-1.182e+00;SOR=0.695;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,33:73:99:792,0,1025
chr4	5468231	rs3815189	A	G	282.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=1.24;SOR=1.445;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr4	5469810	rs2301855	T	C	1247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=2.84;SOR=0.730;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,50:116:99:1256,0,1568
chr4	5469916	rs41268643	G	A	1205.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977e+00;DB;DP=43;ExcessHet=3.9794;FS=1.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.899;SOR=0.897;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:657,0,650
chr4	5500511	rs13116133	A	C	3624.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=2.086;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1117,102,0
chr4	5500906	.	G	GA	348.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=33;ExcessHet=3.0103;FS=1.741;MQ=60.00;MQRankSum=0.00;QD=10.55;ReadPosRankSum=0.456;SOR=1.387;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,14:33:99:357,0,521
chr4	5527008	rs2267655	C	T	746.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.09;SOR=1.802;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:763,72,0
chr4	5527249	rs2267654	A	G	1604.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=0.941;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1621,156,0
chr4	5527476	rs28663349	T	C	189.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.57;SOR=2.303;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:206,18,0
chr4	5528115	rs3078935	ATT	A	1516.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.473;DB;DP=42;ExcessHet=1.5490;FS=2.433;MQ=60.00;MQRankSum=0.00;QD=20.22;ReadPosRankSum=0.257;SOR=0.475;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1492,126,0
chr4	5566748	rs4234707	T	C	69.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.98;SOR=2.303;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	5570104	rs12508361	T	C	144.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=3.258;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr4	5570221	rs12511039	G	A	1307.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.21;DB;DP=34;ExcessHet=1.5490;FS=3.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=-2.320e-01;SOR=0.264;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1114,102,0
chr4	5576140	rs7670299	T	C	171.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr4	5577747	rs62297462	C	T	282.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=0.366;SOR=2.303;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr4	5577884	rs6840591	T	C	4383.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.244e+00;DB;DP=46;ExcessHet=3.0103;FS=5.373;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=-4.300e-02;SOR=1.692;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1679,138,0
chr4	5616946	rs4560347	G	C	163.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:172,0,108
chr4	5617295	rs10025164	T	C	1449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.726e+00;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-1.050e-01;SOR=0.651;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,63:138:99:1458,0,1979
chr4	5617369	rs10032860	G	T	764.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.490e-01;DB;DP=54;ExcessHet=3.0103;FS=3.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=1.99;SOR=1.473;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:773,0,926
chr4	5624670	rs730469	T	C	3388.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=133;ExcessHet=3.9794;FS=2.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.225;SOR=0.548;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,68:133:99:1859,0,1606
chr4	5624881	.	GAGA	G	30.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085e+00;DP=16;ExcessHet=3.0103;FS=6.168;MQ=60.00;MQRankSum=0.00;QD=1.89;ReadPosRankSum=0.00;SOR=0.020;VQSLOD=4.18;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:39:0|1:5624881_GAGA_G:39,0,882:5624881
chr4	5624886	.	T	TACG	30.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.606e+00;DP=17;ExcessHet=3.0103;FS=6.422;MQ=60.00;MQRankSum=0.00;QD=1.78;SOR=0.018;VQSLOD=3.95;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,2:17:39:0|1:5624881_GAGA_G:39,0,882:5624881
chr4	5624889	.	A	G	30.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295e+00;DP=17;ExcessHet=3.0103;FS=6.422;MQ=60.00;MQRankSum=0.00;QD=1.78;ReadPosRankSum=0.149;SOR=0.018;VQSLOD=20.68;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,2:17:39:0|1:5624881_GAGA_G:39,0,882:5624881
chr4	5624894	.	G	A	33.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923e+00;DP=16;ExcessHet=3.0103;FS=6.168;MQ=60.00;MQRankSum=0.00;QD=2.08;ReadPosRankSum=-4.770e-01;SOR=0.020;VQSLOD=20.78;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,2:16:42:0|1:5624881_GAGA_G:42,0,840:5624881
chr4	5624900	rs35325839	T	C	161.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=15;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.123;SOR=1.609;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,5:15:99:1|0:5624881_GAGA_G:170,0,304:5624881
chr4	5624901	.	T	C	36.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473e+00;DP=15;ExcessHet=3.0103;FS=5.898;MQ=60.00;MQRankSum=0.00;QD=2.42;ReadPosRankSum=-1.278e+00;SOR=0.023;VQSLOD=20.74;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,2:15:45:0|1:5624881_GAGA_G:45,0,798:5624881
chr4	5642141	rs751842	C	T	2149.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.02;ReadPosRankSum=-6.630e-01;SOR=1.946;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:5642141_C_T:855,57,0:5642141
chr4	5642161	rs751841	A	G	3455.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=5.473;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:5642141_C_T:1097,75,0:5642141
chr4	5642756	rs4577515	T	C	2967.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=46;ExcessHet=3.9794;FS=1.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=0.640;SOR=0.882;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1655,138,0
chr4	5642878	rs10937657	G	A	735.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=7;ExcessHet=3.9794;FS=4.260;MQ=59.62;MQRankSum=0.812;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=0.695;SOR=2.584;VQSLOD=-8.370e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr4	5664656	rs13125075	A	T	601.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=5.549;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:258,18,0
chr4	5665201	rs4689273	G	A	356.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.40;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr4	5686924	rs957727	G	A	3958.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.225e+00;DB;DP=39;ExcessHet=3.0103;FS=6.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.08;ReadPosRankSum=1.53;SOR=0.236;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1356,117,0
chr4	5686967	rs957726	C	T	6290.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.841e+00;DB;DP=74;ExcessHet=3.0103;FS=1.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=2.12;SOR=0.575;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2422,222,0
chr4	5687263	rs998092	A	G	2469.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.47;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.08;ReadPosRankSum=-1.291e+00;SOR=0.710;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:688,51,0
chr4	5690611	rs113294715	T	G	757.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.58;ReadPosRankSum=1.65;SOR=1.255;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:340,24,0
chr4	5691199	rs10937661	C	T	1061.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=6.666;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:424,33,0
chr4	5692977	rs17688121	C	T	2273.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.000e-03;DB;DP=41;ExcessHet=3.9794;FS=1.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=0.394;SOR=0.657;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1116,122,0
chr4	5693112	rs35705473	C	T	726.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.329e+00;DB;DP=6;ExcessHet=1.5490;FS=2.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=-6.530e-01;SOR=1.402;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:205,18,0
chr4	5721049	rs35870680	A	G	3989.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860e-01;DB;DP=109;ExcessHet=6.9897;FS=2.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.04;SOR=0.558;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,53:109:99:1290,0,1457
chr4	5730728	rs6825779	T	A	352.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-8.420e-01;SOR=0.793;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,154
chr4	5730863	rs111861127	C	T	670.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.650e-01;DB;DP=23;ExcessHet=3.9794;FS=1.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-9.660e-01;SOR=0.876;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:283,0,387
chr4	5731158	rs113870218	C	T	2017.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=68;ExcessHet=3.9794;FS=2.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.154;SOR=0.950;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,36:68:99:965,0,825
chr4	5733068	rs1871586	G	T	1944.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=73;ExcessHet=3.9794;FS=0.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-4.600e-02;SOR=0.800;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,47:73:99:1303,0,609
chr4	5734882	rs73795032	C	G	1713.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=2.44;SOR=0.671;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:889,0,636
chr4	5734957	rs75063475	G	A	2042.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.610e-01;DB;DP=95;ExcessHet=3.9794;FS=1.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-2.720e-01;SOR=0.576;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,39:95:99:938,0,1522
chr4	5735303	rs2291155	C	T	301.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=1.14;SOR=0.412;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:137,0,161
chr4	5735316	rs36091422	G	C	338.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.00;SOR=0.804;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:75:156,0,75
chr4	5743509	rs6446393	C	T	5614.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=1.593;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:5743509_C_T:1984,135,0:5743509
chr4	5743512	rs6414624	T	C	3174.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=42;ExcessHet=3.9794;FS=4.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=0.339;SOR=0.391;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:5743509_C_T:1984,135,0:5743509
chr4	5746915	rs369153323	TC	T	736.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DB;DP=48;ExcessHet=3.0103;FS=1.248;MQ=59.81;MQRankSum=0.00;QD=15.34;ReadPosRankSum=-9.310e-01;SOR=0.474;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,20:48:99:0|1:5746915_TC_T:745,0,1092:5746915
chr4	5746916	rs4689313	C	T,*	3277.72	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.52;DB;DP=48;ExcessHet=3.0103;FS=7.622;MQ=59.94;MQRankSum=0.00;QD=22.15;ReadPosRankSum=-1.170e+00;SOR=1.550;VQSLOD=3.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,28,20:48:99:1690,832,745,898,0,1092
chr4	5746917	rs372546602	TTC	T	736.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;DB;DP=48;ExcessHet=3.0103;FS=1.248;MQ=59.81;MQRankSum=0.00;QD=15.34;ReadPosRankSum=-9.630e-01;SOR=0.474;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,20:48:99:0|1:5746915_TC_T:745,0,1092:5746915
chr4	5747078	rs2286342	A	G	4975.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.652e+00;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=1.16;SOR=0.650;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1857,168,0
chr4	5747131	rs13145958	C	A	2546.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.369;DB;DP=37;ExcessHet=3.9794;FS=2.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=2.10;SOR=0.487;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:577,0,520
chr4	5749807	rs56193413	C	T	1019.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.752e+00;DB;DP=59;ExcessHet=3.0103;FS=1.076;MQ=60.00;MQRankSum=0.00;QD=17.28;ReadPosRankSum=-5.800e-01;SOR=0.538;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,26:59:99:0|1:5749807_C_T:1028,0,3473:5749807
chr4	5749814	rs144810134	C	CGTTTG	2366.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.00;DB;DP=74;ExcessHet=3.9794;FS=3.298;MQ=60.00;MQRankSum=0.00;QD=15.88;ReadPosRankSum=1.26;SOR=1.007;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,31:74:99:0|1:5749807_C_T:1172,0,3962:5749807
chr4	5749961	rs4688962	G	C	2731.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=118;ExcessHet=3.9794;FS=5.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=0.125;SOR=1.034;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,50:118:99:1272,0,1806
chr4	5750003	rs33929747	A	G	3861.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DB;DP=66;ExcessHet=6.9897;FS=5.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=-9.470e-01;SOR=0.431;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,36:66:99:1000,0,740
chr4	5750084	rs4688961	A	T	675.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=-4.230e-01;SOR=0.473;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:229,0,423
chr4	5754355	rs6812234	C	A,T	860.31	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.920e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.73;ReadPosRankSum=0.723;SOR=3.258;VQSLOD=18.45;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,4,4:8:99:304,148,136,156,0,144
chr4	5754396	rs6810769	G	C	2382.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.25;SOR=8.121;VQSLOD=24.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:537,39,0
chr4	5754544	rs899691	T	C	10088.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=152;ExcessHet=3.9794;FS=8.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=-7.320e-01;SOR=1.364;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,76:152:99:2154,0,1817
chr4	5755373	rs7660793	G	C	1021.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650e+00;DB;DP=27;ExcessHet=3.9794;FS=5.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=-1.006e+00;SOR=0.172;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:494,0,364
chr4	5755542	rs2302075	C	A	8240.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=87;ExcessHet=3.0103;FS=2.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=1.49;SOR=0.153;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2513,251,0
chr4	5757932	rs5855888	GA	G	246.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DB;DP=48;ExcessHet=3.9794;FS=1.355;MQ=59.77;MQRankSum=0.813;QD=2.62;ReadPosRankSum=-1.130e-01;SOR=0.857;VQSLOD=0.282;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,9:48:99:147,0,606
chr4	5785442	rs1383180	G	A	2464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=91;ExcessHet=3.9794;FS=9.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-1.893e+00;SOR=1.234;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,38:91:99:1020,0,1248
chr4	5795616	rs4689303	C	A	230.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.16;SOR=3.912;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	5798627	rs2291152	G	A	2611.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.65;DB;DP=49;ExcessHet=1.5490;FS=3.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=1.09;SOR=1.266;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1824,147,0
chr4	5799070	rs76138881	A	C	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.043e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=-1.001e+00;SOR=0.788;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,26:50:99:725,0,791
chr4	5803669	rs1031919	T	C	5132.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.235;DB;DP=67;ExcessHet=3.0103;FS=1.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.19;ReadPosRankSum=-7.330e-01;SOR=0.945;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2253,201,0
chr4	5803904	rs1031918	C	T	6015.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.000e+00;DB;DP=89;ExcessHet=3.9794;FS=10.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=0.716;SOR=0.348;VQSLOD=18.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:3035,267,0
chr4	5806366	rs1552057	T	C	481.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=32;ExcessHet=3.0103;FS=9.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-2.036e+00;SOR=0.061;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:490,0,392
chr4	5806712	rs62297684	G	T	56.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-1.383e+00;SOR=2.303;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,71
chr4	5812195	rs2279250	A	G	3029.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=63;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.019;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,34:63:99:1071,0,749
chr4	5812566	rs2279247	A	G	1579.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=53;ExcessHet=3.9794;FS=6.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.351;SOR=1.255;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,16:53:99:418,0,1038
chr4	5812778	rs2291151	G	A	2515.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=3.040;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1193,99,0
chr4	5830414	rs6818391	T	C	13164.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.419e+00;DB;DP=177;ExcessHet=3.0103;FS=1.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=-6.440e-01;SOR=0.870;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,94:177:99:2253,0,2008
chr4	5837871	rs3815264	A	G	305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.058e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=-6.960e-01;SOR=0.602;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:314,0,365
chr4	5838347	rs2240494	G	A	70.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=14;ExcessHet=3.0103;FS=6.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.02;ReadPosRankSum=-5.460e-01;SOR=0.016;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:79:79,0,368
chr4	5838513	rs12331	C	G	1842.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.960e-01;DB;DP=98;ExcessHet=3.9794;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-4.140e-01;SOR=0.804;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,39:98:99:869,0,1513
chr4	5838837	rs7654446	G	A	66.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.09;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:75,0,31
chr4	5841350	rs16837723	A	G	782.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.859e+00;DB;DP=49;ExcessHet=3.0103;FS=4.235;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=2.43;SOR=0.758;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,32:49:99:791,0,469
chr4	5841423	rs35087184	T	TAAAC	1326.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=41;ExcessHet=3.9794;FS=9.479;MQ=60.00;MQRankSum=0.00;QD=16.79;ReadPosRankSum=0.598;SOR=1.675;VQSLOD=3.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,20:41:99:777,0,1001
chr4	5841649	rs13144677	C	A	51.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=57.88;MQRankSum=-1.068e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.39;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=0.220;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,202
chr4	5841662	rs13125595	T	C	39.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=57.88;MQRankSum=-1.068e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.61;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=0.114;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:45:45,0,182
chr4	5842856	rs3774885	A	G	540.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=-5.250e-01;SOR=1.179;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:188,0,199
chr4	5850833	rs10937684	G	C	403.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.360e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.063;SOR=0.368;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:143,0,190
chr4	5851234	.	TA	T	360.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.82;ReadPosRankSum=-2.130e-01;SOR=0.644;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,7:34:81:81,0,524
chr4	5851343	rs2276877	C	T	288.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=0.180;SOR=0.593;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:59:145,0,59
chr4	5853514	rs13124908	A	G	662.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=16;ExcessHet=3.0103;FS=3.495;MQ=60.00;MQRankSum=0.00;QD=21.36;ReadPosRankSum=-1.465e+00;SOR=1.508;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:188,0,249
chr4	5863032	rs13130069	G	A	1278.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=39;ExcessHet=3.9794;FS=0.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.857;SOR=0.914;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:592,0,510
chr4	5889007	.	T	C	979.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.759;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.94;ReadPosRankSum=1.93;SOR=0.711;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,40:82:99:988,0,1017
chr4	5889117	rs28550375	T	A	2611.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=139;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.671;SOR=0.697;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,62:139:99:1519,0,1813
chr4	5889251	rs3755851	A	G	1128.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.520e-01;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.267;SOR=0.756;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:236,0,317
chr4	5889340	rs28475438	A	G	364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-4.140e-01;SOR=0.188;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:114,0,65
chr4	5924794	rs12506399	G	A	123.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.00;SOR=0.269;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:64:64,0,199
chr4	5924805	rs7672010	T	C	120.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.00;SOR=0.269;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,195
chr4	5925186	rs4348041	G	A	858.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.220e-01;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=0.337;SOR=0.793;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:198,0,519
chr4	5966494	rs71171498	CAA	C	722.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.0103;FS=7.775;MQ=58.92;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=0.842;SOR=2.349;VQSLOD=0.524;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,3:6:57:62,0,57
chr4	5966618	rs6828891	A	G	2953.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=40;ExcessHet=3.9794;FS=6.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=0.922;SOR=1.339;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,30:40:99:837,0,224
chr4	5969113	rs9997727	G	A	4555.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377e+00;DB;DP=82;ExcessHet=3.9794;FS=2.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.06;ReadPosRankSum=-9.800e-02;SOR=0.541;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,34:82:99:858,0,1364
chr4	5969235	rs7690750	A	G	8406.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=120;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=1.45;SOR=0.718;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,48:120:99:1071,0,1747
chr4	5969252	rs7690889	A	G	8131.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e-01;DB;DP=109;ExcessHet=3.0103;FS=1.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=0.683;SOR=0.825;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,47:109:99:1126,0,1545
chr4	5969292	rs6446420	C	A	5910.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.072e+00;DB;DP=74;ExcessHet=3.0103;FS=5.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=-3.970e-01;SOR=1.194;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,33:74:99:830,0,1106
chr4	5969303	rs6446421	T	A	5579.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e+00;DB;DP=68;ExcessHet=3.0103;FS=3.343;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=-4.020e-01;SOR=1.017;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:803,0,1060
chr4	5969364	rs6446422	T	C	2838.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.930e-01;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=-4.050e-01;SOR=0.941;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,7:26:99:184,0,573
chr4	5969378	rs11415730	C	CA	2913.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=20;ExcessHet=3.0103;FS=1.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.11;ReadPosRankSum=-1.856e+00;SOR=1.284;VQSLOD=6.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,6:20:99:180,0,504
chr4	5975174	rs16837957	A	G	2611.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.252e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.49;ReadPosRankSum=-1.666e+00;SOR=2.327;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:947,75,0
chr4	5975538	rs16837960	G	A	14804.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.484;DB;DP=182;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.72;ReadPosRankSum=0.507;SOR=0.646;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,182:182:99:6045,546,0
chr4	5977462	rs4689291	C	T	631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=16;ExcessHet=3.9794;FS=12.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.00;SOR=2.935;VQSLOD=12.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:297,0,238
chr4	5977553	rs4689290	T	C	3006.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=63;ExcessHet=1.5490;FS=1.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-7.300e-02;SOR=1.009;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2223,188,0
chr4	5977566	rs4689289	C	A	5201.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.46;DB;DP=73;ExcessHet=3.9794;FS=11.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.41;ReadPosRankSum=0.385;SOR=1.327;VQSLOD=17.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2573,219,0
chr4	5977911	rs10009350	G	A	746.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=0.413;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:522,42,0
chr4	5981742	rs60012784	G	T	333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-01;DB;DP=10;ExcessHet=3.9794;FS=3.862;MQ=60.00;MQRankSum=0.00;QD=13.32;ReadPosRankSum=0.063;SOR=0.190;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:102,0,193
chr4	5990110	rs4689287	C	A	6981.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.650e-01;DB;DP=156;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=-2.024e+00;SOR=0.717;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4708,466,0
chr4	5990339	rs6845455	G	A	5900.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.434e+00;DB;DP=93;ExcessHet=3.9794;FS=4.549;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=0.451;SOR=0.495;VQSLOD=6.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2940,279,0
chr4	5990551	rs58136927	G	A	2551.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=99;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.843;SOR=0.706;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,45:99:99:1191,0,1541
chr4	5990599	rs751240	T	C	11709.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=0.693;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3101,308,0
chr4	5990791	rs2016083	A	G	6908.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=107;ExcessHet=3.9794;FS=1.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.252;SOR=0.751;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3494,321,0
chr4	5991084	rs2003982	T	G	2380.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.11;DB;DP=132;ExcessHet=3.0103;FS=2.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=1.28;SOR=0.928;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,75:132:99:2389,0,1612
chr4	5991384	rs4234711	T	C	14198.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.540e-01;DB;DP=223;ExcessHet=3.9794;FS=0.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=1.02;SOR=0.777;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,223:223:99:6816,669,0
chr4	5991476	rs4266238	G	A	5021.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.872e+00;DB;DP=115;ExcessHet=1.5490;FS=0.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.408;SOR=0.768;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3339,339,0
chr4	6051288	rs4346592	A	G	703.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.04;SOR=5.994;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr4	6080817	rs6446452	T	C	949.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=65;ExcessHet=3.0103;FS=1.168;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.60;ReadPosRankSum=-3.150e-01;SOR=0.507;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,32:65:99:958,0,975
chr4	6087041	rs112165760	A	ATGAG	617.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DB;DP=2;ExcessHet=6.9897;FS=7.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.05;ReadPosRankSum=-2.980e-01;SOR=2.235;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:10:0|1:6087041_A_ATGAG:120,0,10:6087041
chr4	6087057	rs7666743	C	T	1404.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=8;ExcessHet=3.0103;FS=9.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=-1.534e+00;SOR=4.100;VQSLOD=12.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,7:8:2:1|1:6087041_A_ATGAG:275,2,0:6087041
chr4	6087371	rs73196084	G	A	1592.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655e+00;DB;DP=81;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=1.08;SOR=0.694;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,29:81:99:542,0,1312
chr4	6107765	rs10000296	T	G	1018.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=58;ExcessHet=3.0103;FS=3.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-1.068e+00;SOR=0.223;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:1027,0,754
chr4	6234545	rs11273008	G	GGCTGGATCACCT	5745.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.61;SOR=6.666;VQSLOD=6.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1574,105,0
chr4	6279047	rs10937714	C	T	4832.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=29.10;SOR=2.524;VQSLOD=4.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1536,135,0
chr4	6279504	rs28420833	G	A	1524.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.079e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.58;SOR=0.832;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:376,0,393
chr4	6290594	rs4688989	T	C	1402.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=-2.520e-01;SOR=1.107;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:411,0,208
chr4	6291003	rs4689394	C	G	4299.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=62;ExcessHet=3.9794;FS=1.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=1.00;SOR=0.827;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:713,0,993
chr4	6292716	rs11732208	G	C	1163.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.610e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.28;ReadPosRankSum=0.993;SOR=0.412;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:286,0,339
chr4	6292755	rs55640037	C	CAGGGGCATG	2460.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=28;ExcessHet=3.9794;FS=10.211;MQ=60.00;MQRankSum=0.00;QD=30.01;ReadPosRankSum=0.936;SOR=3.258;VQSLOD=2.01;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,9:28:99:0|1:6292755_C_CAGGGGCATG:363,0,1005:6292755
chr4	6292758	rs56102017	G	GCA	2688.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=29;ExcessHet=3.9794;FS=6.903;MQ=60.00;MQRankSum=0.00;QD=26.11;ReadPosRankSum=-1.380e-01;SOR=2.175;VQSLOD=4.64;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,10:29:99:0|1:6292755_C_CAGGGGCATG:363,0,1005:6292755
chr4	6292799	rs5018647	A	C	3660.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=58;ExcessHet=3.9794;FS=8.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=-1.011e+00;SOR=1.431;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,19:58:99:516,0,1067
chr4	6292818	rs5018648	C	G	5014.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=93;ExcessHet=3.9794;FS=10.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=-4.800e-01;SOR=1.322;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,31:93:99:794,0,1787
chr4	6292909	rs9998519	C	T	15745.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DB;DP=243;ExcessHet=3.9794;FS=1.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=-5.360e-01;SOR=0.834;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:151,92:243:99:0|1:6292909_C_T:3431,0,7513:6292909
chr4	6292915	rs10010131	A	G	15905.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=255;ExcessHet=3.9794;FS=1.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=-8.930e-01;SOR=0.812;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:158,97:255:99:0|1:6292909_C_T:3457,0,7664:6292909
chr4	6293237	rs9998835	C	G	1110.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.060e-01;DB;DP=16;ExcessHet=3.9794;FS=1.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=2.22;SOR=1.060;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:219,0,333
chr4	6293350	rs10012946	T	C	770.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:250,0,163
chr4	6293446	rs13101355	T	C	1934.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=29;ExcessHet=3.9794;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=-8.900e-02;SOR=1.159;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:503,0,287
chr4	6293474	rs13147655	A	G	2305.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=39;ExcessHet=3.9794;FS=0.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=1.38;SOR=0.894;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:565,0,502
chr4	6293696	rs1801213	C	G	4935.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;DB;DP=79;ExcessHet=3.9794;FS=0.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-3.460e-01;SOR=0.753;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,35:79:99:823,0,1042
chr4	6293838	rs11729672	A	G	927.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=8;ExcessHet=3.9794;FS=2.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=1.61;SOR=2.226;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:6293838_A_G:108,0,298:6293838
chr4	6293855	rs11725494	C	T	694.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.73;ReadPosRankSum=0.524;SOR=0.877;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:99:0|1:6293838_A_G:114,0,219:6293838
chr4	6302199	rs4689398	C	T	710.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=-6.520e-01;SOR=0.976;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:144,0,105
chr4	6302220	rs4688991	C	G	982.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=0.624;SOR=1.007;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:126,0,216
chr4	6302519	rs1801212	G	A	21545.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=314;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.97;ReadPosRankSum=0.567;SOR=0.689;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:186,128:314:99:3054,0,4818
chr4	6302707	rs1801206	C	T	21715.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.876e+00;DB;DP=345;ExcessHet=3.9794;FS=1.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=0.807;SOR=0.836;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:181,164:345:99:4200,0,4948
chr4	6303022	rs1801214	C	T	13483.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DB;DP=232;ExcessHet=3.9794;FS=1.156;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=0.819;SOR=0.808;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:131,101:232:99:2385,0,3380
chr4	6303354	rs734312	G	A	10795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=270;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.078;SOR=0.629;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,132:270:99:3435,0,3465
chr4	6303955	rs1046314	G	A	13983.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.245e+00;DB;DP=369;ExcessHet=6.9897;FS=1.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.236;SOR=0.591;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:185,184:369:99:4532,0,5270
chr4	6304087	rs1046316	A	G	13498.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=191;ExcessHet=3.9794;FS=1.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=1.90;SOR=0.866;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,72:191:99:1968,0,3157
chr4	6304242	rs1046317	T	C	4471.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=0.062;SOR=0.667;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:646,0,708
chr4	6304286	rs1046319	C	T	2788.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.958e+00;DB;DP=23;ExcessHet=3.9794;FS=1.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=0.189;SOR=1.112;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:273,0,469
chr4	6325018	rs3796402	A	T	4488.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=103;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-1.520e-01;SOR=0.708;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,49:103:99:1269,0,1315
chr4	6325086	rs3796403	G	A	8018.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=191;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-5.140e-01;SOR=0.674;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,91:191:99:2305,0,2398
chr4	6330911	rs112236175	G	A	580.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=1.41;SOR=0.452;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:589,0,580
chr4	6330938	rs6829844	C	G	912.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.529;DB;DP=56;ExcessHet=3.0103;FS=1.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=-3.690e-01;SOR=0.412;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,29:56:99:921,0,873
chr4	6335186	rs4689405	C	T	3144.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.61;DB;DP=38;ExcessHet=3.0103;FS=7.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=-1.350e+00;SOR=1.689;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1355,114,0
chr4	6335203	rs10937722	C	T	1317.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.878;DB;DP=54;ExcessHet=3.9794;FS=0.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.554;SOR=0.856;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:666,0,695
chr4	6374189	rs6837903	A	G	9841.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=2.697;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3019,287,0
chr4	6374230	rs35520578	C	CA	4301.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=147;ExcessHet=3.9794;FS=1.435;MQ=60.00;MQRankSum=0.00;QD=14.29;ReadPosRankSum=1.24;SOR=0.588;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:79,68:147:99:2063,0,2490
chr4	6374468	rs12511721	T	C	4333.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.099e+00;DB;DP=58;ExcessHet=3.9794;FS=0.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=0.452;SOR=0.592;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,29:58:99:738,0,854
chr4	6377530	rs4688997	C	G	1885.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=56;ExcessHet=6.9897;FS=3.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.296;SOR=1.009;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,28:56:99:676,0,709
chr4	6377534	rs4688998	A	G	6430.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=1.637;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2101,168,0
chr4	6377713	rs4234738	G	C	6525.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.99;SOR=1.134;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2357,231,0
chr4	6379992	rs6835336	T	C	941.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.63;ReadPosRankSum=0.545;SOR=3.258;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:236,18,0
chr4	6383792	rs4688999	C	A	724.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.000e+00;DB;DP=11;ExcessHet=1.5490;FS=2.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-1.290e-01;SOR=0.184;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:415,33,0
chr4	6385312	rs7694129	C	T	1333.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.571e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=1.49;SOR=1.162;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:465,42,0
chr4	6415908	rs112913660	CCTGGCTGGAGCTAGAA	C	343.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.27;SOR=4.407;VQSLOD=4.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr4	6536839	rs13142248	C	T	329.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.264e+00;DB;DP=14;ExcessHet=1.5490;FS=3.039;MQ=59.84;MQRankSum=-6.740e-01;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=0.497;SOR=0.160;VQSLOD=1.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:178,0,249
chr4	6536850	rs13140794	G	A	358.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=14;ExcessHet=3.9794;FS=3.139;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=1.28;SOR=0.129;VQSLOD=5.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:215,0,261
chr4	6536979	rs13141184	G	A	4034.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=1.352;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2162,217,0
chr4	6578487	rs4689485	A	G	7541.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=1.369;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1786,180,0
chr4	6594669	rs11725467	C	G	271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-2.530e-01;SOR=0.392;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:59:59,0,305
chr4	6594827	rs10937747	A	G	11715.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.543e+00;DB;DP=184;ExcessHet=3.0103;FS=2.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=-1.380e+00;SOR=0.483;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,184:184:99:5382,550,0
chr4	6594947	rs2301796	A	C	6270.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.47;DB;DP=320;ExcessHet=3.9794;FS=1.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.664;SOR=0.784;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:179,141:320:99:3507,0,4215
chr4	6596034	rs34654106	GTGGCGCCTGCAGCCTCAGGGAGGC	G	275.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.03;ReadPosRankSum=-1.800e-01;SOR=1.270;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr4	6596360	rs2301795	G	A	3725.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DB;DP=107;ExcessHet=6.9897;FS=0.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=0.844;SOR=0.657;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,45:107:99:1089,0,1622
chr4	6596515	rs4234761	C	T	1488.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=7.276;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:312,24,0
chr4	6596552	rs2301793	C	T	320.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.057e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=0.700;SOR=1.329;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:100,9,0
chr4	6599684	rs2301791	T	A	299.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.176;SOR=0.188;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:213,0,135
chr4	6600012	rs2301790	A	G	3279.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=149;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.620;SOR=0.708;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,67:149:99:1514,0,1855
chr4	6602255	rs2301789	A	G	2120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.89;DB;DP=67;ExcessHet=3.9794;FS=10.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.776;SOR=1.500;VQSLOD=18.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,33:67:99:898,0,790
chr4	6602516	rs12639813	A	G	1047.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.170e-01;DB;DP=21;ExcessHet=3.9794;FS=2.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=1.45;SOR=1.284;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:388,0,330
chr4	6606864	rs2301788	A	G	6801.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=223;ExcessHet=3.9794;FS=1.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=1.29;SOR=0.824;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,114:223:99:2814,0,2535
chr4	6607295	rs78076320	A	G	94.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=1.29;SOR=2.303;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,118
chr4	6610622	rs4689486	C	T	303.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.69;SOR=0.527;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:215,0,128
chr4	6610668	rs11721430	C	T	473.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.437;SOR=0.343;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:197,0,204
chr4	6611813	rs4689487	T	C	1941.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e+00;DB;DP=67;ExcessHet=3.9794;FS=2.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.354;SOR=1.009;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:1085,0,761
chr4	6612384	rs11940165	G	A	592.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=0.990;SOR=0.641;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:255,0,225
chr4	6619004	rs4234764	A	G	810.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.77;ReadPosRankSum=0.00;SOR=3.528;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr4	6619052	rs4689488	A	G	1824.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.19;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.76;ReadPosRankSum=-2.885e+00;SOR=2.428;VQSLOD=21.17;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:480,33,0
chr4	6619165	rs4689489	A	G	8677.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=1.462;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2918,276,0
chr4	6619204	rs4689490	G	A	7517.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.322e+00;DB;DP=117;ExcessHet=3.0103;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=-9.290e-01;SOR=0.653;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,47:117:99:979,0,1761
chr4	6619378	rs7698546	T	C	798.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=39;ExcessHet=3.0103;FS=3.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.47;ReadPosRankSum=-1.304e+00;SOR=1.371;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,25:39:99:807,0,326
chr4	6623032	rs4234768	G	T	12876.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=30.44;SOR=0.975;VQSLOD=4.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4427,454,0
chr4	6675780	rs4689031	T	C	112.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=1.38;SOR=1.609;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,66
chr4	6698500	rs113431497	C	CTGAGCCTGAA	2972.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.11;SOR=8.189;VQSLOD=7.35;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,19:19:63:945,63,0
chr4	6698664	rs11737783	G	A	1466.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.721e+00;DB;DP=105;ExcessHet=3.0103;FS=2.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-7.450e-01;SOR=0.582;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,60:105:99:1475,0,1218
chr4	6698667	rs11734898	T	C	10884.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.12;SOR=0.738;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:4271,328,0
chr4	6698706	rs11733989	A	C	9469.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.022;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3186,312,0
chr4	6718775	rs3172604	G	T	4457.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=3.395;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1411,102,0
chr4	6925009	rs41516949	A	C	1227.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.420e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=0.929;SOR=0.986;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:798,63,0
chr4	6956059	rs11732887	T	C	11989.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.725;DB;DP=216;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=0.801;SOR=0.724;VQSLOD=6.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,216:216:99:6425,648,0
chr4	6956134	rs11732898	T	C	11611.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.140e-01;DB;DP=204;ExcessHet=3.9794;FS=0.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=2.36;SOR=0.728;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,204:204:99:6009,611,0
chr4	6956334	rs10648255	G	GACTA	1365.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.572e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=-4.400e-02;SOR=1.508;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr4	6968942	rs9291126	C	T	930.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.130e+00;DB;DP=7;ExcessHet=3.0103;FS=3.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.21;ReadPosRankSum=-3.440e-01;SOR=2.235;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:218,21,0
chr4	6989436	rs6846823	T	C	1529.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.35;SOR=7.223;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:434,30,0
chr4	7002803	rs2301817	C	T	4648.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.783e+00;DB;DP=60;ExcessHet=3.0103;FS=1.428;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=-2.027e+00;SOR=0.540;VQSLOD=6.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1703,178,0
chr4	7012729	rs3857172	G	A	551.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.59;ReadPosRankSum=1.24;SOR=2.093;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr4	7027041	rs6834102	C	T	2607.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.86;DB;DP=24;ExcessHet=3.0103;FS=1.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=-1.162e+00;SOR=0.928;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:786,72,0
chr4	7044357	rs871133	A	G	5565.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.523;DB;DP=67;ExcessHet=3.0103;FS=0.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.14;ReadPosRankSum=-2.760e-01;SOR=0.796;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2511,201,0
chr4	7064003	rs11422620	A	AC	863.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.364e+00;DB;DP=17;ExcessHet=1.5490;FS=9.334;MQ=59.73;MQRankSum=-7.130e-01;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=1.33;SOR=0.069;VQSLOD=0.248;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,17:17:51:498,51,0
chr4	7064214	rs9291128	T	G	1005.23	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.000e-02;DB;DP=17;ExcessHet=3.0103;FS=2.627;MQ=60.00;MQRankSum=0.00;QD=34.66;ReadPosRankSum=2.74;SOR=0.203;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:7064214_T_G:693,51,0:7064214
chr4	7064218	rs60881938	TA	T	572.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.18;SOR=2.833;VQSLOD=4.10;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:7064214_T_G:583,39,0:7064214
chr4	7064220	rs376145748	TATATA	T	572.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.05;SOR=2.670;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:39:1|1:7064214_T_G:583,39,0:7064214
chr4	7064243	rs6812318	C	T	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.43;SOR=0.693;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:7064214_T_G:90,6,0:7064214
chr4	7066052	rs2359011	T	G	3220.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.40;DB;DP=34;ExcessHet=3.9794;FS=1.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.50;ReadPosRankSum=0.963;SOR=1.042;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,34:34:99:1|1:7066052_T_G:1508,102,0:7066052
chr4	7066053	rs2359012	A	C	3220.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.61;DB;DP=32;ExcessHet=3.9794;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.55;ReadPosRankSum=1.21;SOR=1.028;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:7066052_T_G:1508,102,0:7066052
chr4	7069606	rs2276969	G	A	9371.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.291e+00;DB;DP=144;ExcessHet=3.9794;FS=1.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-1.440e-01;SOR=0.798;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4872,432,0
chr4	7069804	rs3822270	C	A	15699.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=268;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=5.000e-03;SOR=0.726;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,268:268:99:8659,803,0
chr4	7069901	rs3822269	T	C	8183.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.46;DB;DP=136;ExcessHet=3.9794;FS=1.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=2.12;SOR=0.596;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4443,408,0
chr4	7312054	rs3930439	A	C	302.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=-1.377e+00;SOR=0.693;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:311,0,201
chr4	7398194	rs9991834	A	G	600.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.880e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=1.34;SOR=0.976;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:406,0,245
chr4	7434988	rs4318651	A	G	1441.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=83;ExcessHet=3.0103;FS=6.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=-4.990e-01;SOR=1.515;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1450,0,1375
chr4	7435009	rs59409649	G	A	1007.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=89;ExcessHet=3.0103;FS=4.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=1.23;SOR=0.306;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,38:89:99:1016,0,1949
chr4	7435058	rs60816800	C	T	1079.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.280e-01;DB;DP=118;ExcessHet=3.0103;FS=1.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=0.050;SOR=0.499;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,45:118:99:1088,0,2011
chr4	7435379	rs4689746	A	G	27994.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=282;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.11;SOR=0.868;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,282:282:99:9656,847,0
chr4	7435486	rs61738677	G	T	6007.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.044e+00;DB;DP=517;ExcessHet=3.0103;FS=1.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=1.000e-03;SOR=0.794;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:268,249:517:99:6016,0,7181
chr4	7435721	rs6850206	C	T	4516.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550e-01;DB;DP=350;ExcessHet=3.0103;FS=2.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=1.69;SOR=0.750;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:183,167:350:99:4525,0,5069
chr4	7435797	rs34136551	G	A	4740.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.720e-01;DB;DP=414;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.482;SOR=0.731;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:205,209:414:99:4749,0,4999
chr4	7436073	rs61740031	C	T	2698.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.720e-01;DB;DP=214;ExcessHet=3.0103;FS=3.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=2.56;SOR=0.862;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,108:214:99:2707,0,2760
chr4	7436239	rs56402179	C	T	2617.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=215;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=1.97;SOR=0.676;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,98:215:99:2626,0,3014
chr4	7436701	rs77191210	C	T	107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.70;ReadPosRankSum=0.667;SOR=0.527;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:99:116,0,378
chr4	7461618	rs12512597	A	G	1448.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.83;ReadPosRankSum=-3.300e-01;SOR=0.409;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:84:1|1:7461618_A_G:1255,84,0:7461618
chr4	7461625	rs12500783	G	A	1452.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.145e+00;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=-7.400e-01;SOR=0.407;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,28:28:84:1|1:7461618_A_G:1255,84,0:7461618
chr4	7461769	rs12512664	A	G	6143.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.87;DB;DP=143;ExcessHet=1.5490;FS=1.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=-6.670e-01;SOR=0.780;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4533,429,0
chr4	7461826	rs10655902	C	CCCA	20428.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.600e-01;DB;DP=172;ExcessHet=3.0103;FS=2.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.88;ReadPosRankSum=0.210;SOR=0.879;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,172:172:99:7720,521,0
chr4	7461892	rs57175617	C	T	1998.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.391e+00;SOR=0.668;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,77:162:99:2007,0,2073
chr4	7461910	rs113352273	C	G	1671.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;DB;DP=150;ExcessHet=3.0103;FS=0.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-1.208e+00;SOR=0.773;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,65:150:99:1680,0,2224
chr4	7461915	rs12498272	T	A	17259.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=1.034;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:5147,423,0
chr4	7461931	rs57744041	G	A	1385.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=118;ExcessHet=3.0103;FS=0.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-1.751e+00;SOR=0.836;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,50:118:99:1394,0,1928
chr4	7462058	rs34961985	A	T	1334.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.065e+00;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=-6.760e-01;SOR=0.466;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:999,80,0
chr4	7533191	rs73214626	C	T	1025.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=72;ExcessHet=3.0103;FS=1.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.163;SOR=0.497;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,35:72:99:1034,0,1126
chr4	7533234	rs10007474	C	T	1483.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=124;ExcessHet=3.0103;FS=0.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.438;SOR=0.576;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,58:124:99:1492,0,1669
chr4	7533570	rs7695937	A	G	589.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=8;ExcessHet=1.5490;FS=2.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=0.752;SOR=0.223;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:342,24,0
chr4	7639906	rs2158276	A	C	2016.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.18;SOR=6.399;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:634,45,0
chr4	7655693	rs6826370	G	A	367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=22;ExcessHet=3.0103;FS=5.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-1.304e+00;SOR=2.694;VQSLOD=18.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:376,0,198
chr4	7655855	rs2285789	C	T	6469.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.495e+00;DB;DP=101;ExcessHet=3.0103;FS=0.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=-3.180e-01;SOR=0.703;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,32:101:99:614,0,1857
chr4	7656122	rs62290674	C	T	149.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=0.674;SOR=0.941;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:21:157,0,21
chr4	7663167	rs2285788	A	T	2353.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=85;ExcessHet=3.9794;FS=1.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-1.321e+00;SOR=0.815;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,50:85:99:1386,0,825
chr4	7665945	rs6810814	G	A	626.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=1.87;SOR=1.445;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:205,0,225
chr4	7666160	rs34058821	G	A	2079.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=94;ExcessHet=3.9794;FS=2.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=-1.170e+00;SOR=0.502;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,42:94:99:1005,0,1237
chr4	7668618	rs1541383	A	G	789.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.55;SOR=5.994;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr4	7668674	.	G	T	204.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.02;ReadPosRankSum=-1.335e+00;SOR=0.495;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:213,0,139
chr4	7668967	rs13129869	C	T	588.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.185e+00;DB;DP=38;ExcessHet=3.0103;FS=1.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=-1.080e+00;SOR=0.393;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,22:38:99:597,0,465
chr4	7684248	rs2285786	A	G	459.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=0.431;SOR=1.292;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,100
chr4	7684641	rs4689820	C	A	1387.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.570e-01;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=2.02;SOR=0.648;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,8:33:99:161,0,756
chr4	7684661	rs4689821	C	A	1400.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.607e+00;DB;DP=20;ExcessHet=3.9794;FS=3.958;MQ=60.00;MQRankSum=0.00;QD=26.43;ReadPosRankSum=2.54;SOR=0.245;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,7:20:99:0|1:7684661_C_A:255,0,772:7684661
chr4	7684662	rs4689822	T	C	1400.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=19;ExcessHet=3.9794;FS=1.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.02;ReadPosRankSum=2.37;SOR=0.280;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,7:19:99:0|1:7684661_C_A:255,0,772:7684661
chr4	7691193	rs929264	G	C	9284.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=174;ExcessHet=3.9794;FS=1.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=1.28;SOR=0.530;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,74:174:99:1747,0,2443
chr4	7691419	rs2285785	A	G	2016.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DB;DP=55;ExcessHet=6.9897;FS=0.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.305;SOR=0.603;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,21:55:99:460,0,971
chr4	7714212	rs4689832	G	A	1410.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.361e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.59;ReadPosRankSum=0.141;SOR=3.716;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:504,39,0
chr4	7714490	rs4689833	T	C	15888.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=158;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=0.705;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,158:158:99:4718,474,0
chr4	7716932	rs6816604	T	C	27404.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=281;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=0.855;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,281:281:99:8521,843,0
chr4	7717012	rs2285781	G	A	8816.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.502e+00;DB;DP=220;ExcessHet=1.5490;FS=1.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.602;SOR=0.603;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,220:220:99:6355,654,0
chr4	7717213	rs4689834	T	G	1647.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.28;SOR=6.043;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:293,24,0
chr4	7725851	rs62290751	G	A	447.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=7;ExcessHet=3.9794;FS=6.952;MQ=60.00;MQRankSum=0.00;QD=22.39;ReadPosRankSum=1.44;SOR=2.925;VQSLOD=16.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:104,0,142
chr4	7731310	rs1544402	G	A	4496.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.020;DB;DP=79;ExcessHet=3.9794;FS=2.660;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=0.506;SOR=0.505;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2493,236,0
chr4	7731560	rs1076226	T	A	4078.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.116;DB;DP=65;ExcessHet=3.9794;FS=0.547;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=0.725;SOR=0.629;VQSLOD=6.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1923,193,0
chr4	7735311	rs2285774	G	C	552.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.191;DB;DP=2;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=1.16;SOR=2.712;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr4	7736455	rs6843811	G	A	6950.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.310;DB;DP=96;ExcessHet=3.0103;FS=3.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=1.18;SOR=0.441;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2938,287,0
chr4	7738730	rs6840685	A	C	6607.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.350e-01;DB;DP=77;ExcessHet=3.0103;FS=10.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=0.743;SOR=1.895;VQSLOD=18.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2746,231,0
chr4	7741851	rs12501485	A	G	3883.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.991e+00;DB;DP=60;ExcessHet=3.9794;FS=6.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=2.14;SOR=0.343;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1847,180,0
chr4	7770963	rs11933506	T	C	779.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=-7.230e-01;SOR=1.308;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:416,33,0
chr4	7820727	rs4447865	T	A	1455.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;DB;DP=24;ExcessHet=3.9794;FS=3.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=-6.650e-01;SOR=0.228;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:411,0,332
chr4	7821134	rs4447866	T	C	1068.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.210;SOR=0.434;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:94:94,0,270
chr4	7840696	rs4296679	A	C	298.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=6;ExcessHet=4.7712;FS=4.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.99;ReadPosRankSum=1.07;SOR=2.636;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:73:103,0,73
chr4	7845371	rs28374582	A	G	332.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.20;SOR=4.407;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr4	7870518	rs34570748	G	A	6004.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=149;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.316;SOR=0.734;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4562,445,0
chr4	7968888	rs16841504	T	C	831.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-3.910e-01;SOR=0.711;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,37:89:99:840,0,1091
chr4	7968936	rs13137347	G	C	517.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758e+00;DB;DP=53;ExcessHet=3.0103;FS=1.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=0.512;SOR=0.526;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:526,0,820
chr4	7968953	rs28409515	G	C	475.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.276e+00;DB;DP=41;ExcessHet=3.0103;FS=11.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-5.480e-01;SOR=0.067;VQSLOD=17.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:484,0,705
chr4	7986775	rs71603903	G	T	1114.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.193e+00;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=1.19;SOR=0.822;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:680,0,483
chr4	7994460	rs35219850	T	C	730.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.260e-01;DB;DP=19;ExcessHet=3.9794;FS=3.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=0.974;SOR=2.147;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:220,0,395
chr4	8006928	rs11939078	C	T	466.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.563;DB;DP=21;ExcessHet=3.9794;FS=5.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.32;ReadPosRankSum=0.435;SOR=1.751;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:340,0,168
chr4	8009759	rs17180256	G	A	4444.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.543;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1886,192,0
chr4	8010112	rs13125250	C	T	819.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.18;ReadPosRankSum=-1.834e+00;SOR=4.003;VQSLOD=14.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr4	8021417	rs34477140	A	G	1985.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.35;DB;DP=32;ExcessHet=3.9794;FS=7.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=1.25;SOR=1.104;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1106,96,0
chr4	8021478	rs34327175	T	C	1470.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=26;ExcessHet=3.9794;FS=4.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-3.770e-01;SOR=1.281;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:788,78,0
chr4	8021592	rs13131680	A	C	945.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.99;ReadPosRankSum=2.19;SOR=2.226;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr4	8031313	.	TA	T	515.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DP=23;ExcessHet=3.9794;FS=1.996;MQ=59.88;MQRankSum=-3.810e-01;POSITIVE_TRAIN_SITE;QD=6.78;ReadPosRankSum=-3.300e-02;SOR=1.022;VQSLOD=1.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:23:99:123,0,180
chr4	8031471	rs2385904	A	G	8787.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DB;DP=106;ExcessHet=3.0103;FS=1.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=0.971;SOR=0.572;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3305,318,0
chr4	8034497	rs13151663	G	A	2465.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=94;ExcessHet=6.9897;FS=4.672;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=-6.580e-01;SOR=0.992;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,37:94:99:922,0,1418
chr4	8047171	rs9799373	T	A	339.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.170;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=0.700;SOR=0.269;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:171,0,145
chr4	8062474	rs36100888	G	T	301.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=1.31;SOR=0.984;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:182,0,471
chr4	8062638	rs6853485	A	C	9202.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=126;ExcessHet=3.0103;FS=1.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=0.241;SOR=0.832;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:4029,378,0
chr4	8062689	rs6811028	T	C	11197.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=136;ExcessHet=3.0103;FS=1.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=0.323;SOR=0.629;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:5047,408,0
chr4	8062690	rs10938683	G	A	2841.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=136;ExcessHet=3.9794;FS=0.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.586;SOR=0.699;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,63:136:99:1559,0,1789
chr4	8062871	rs6853901	A	C	799.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.752e+00;DB;DP=25;ExcessHet=3.9794;FS=9.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-6.860e-01;SOR=0.042;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:309,0,478
chr4	8082647	rs2249919	C	G	1017.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=5.058;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:254,18,0
chr4	8090028	rs11722016	C	T	2489.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DB;DP=240;ExcessHet=3.0103;FS=0.996;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=-2.162e+00;SOR=0.772;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,107:240:99:2498,0,3296
chr4	8108027	rs12108540	T	C	1408.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=4.235;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:336,24,0
chr4	8129382	rs13143332	A	G	3525.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.202e+00;DB;DP=61;ExcessHet=1.5490;FS=0.891;MQ=59.88;MQRankSum=-9.400e-01;POSITIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=1.71;SOR=0.865;VQSLOD=1.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2193,183,0
chr4	8207083	rs2677605	A	G	639.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.974;SOR=0.549;VQSLOD=5.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:351,0,323
chr4	8207154	rs1298878	C	T	421.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.06;ReadPosRankSum=1.18;SOR=1.061;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:178,0,143
chr4	8211624	rs1712316	C	T	2025.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.983e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=-1.532e+00;SOR=0.744;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:799,69,0
chr4	8214173	rs11737358	C	T	638.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.46;SOR=3.383;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:308,24,0
chr4	8214636	rs1712287	T	C	1539.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.76;SOR=3.033;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:634,54,0
chr4	8216099	rs2291069	G	A	1629.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=0.566;SOR=0.976;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:479,0,376
chr4	8216391	rs1618403	C	T	2522.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.816e+00;DB;DP=44;ExcessHet=6.9897;FS=0.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-1.860e-01;SOR=0.593;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,24:44:99:634,0,579
chr4	8217664	rs34963544	C	CCG	78.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.61;SOR=2.303;VQSLOD=5.21;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	8219745	rs1123159	C	T	728.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.524;SOR=0.646;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,110
chr4	8220369	rs1281139	G	C	422.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.02;SOR=4.804;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr4	8221058	rs4696782	G	A	9692.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.272e+00;DB;DP=194;ExcessHet=3.9794;FS=1.196;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-3.450e-01;SOR=0.825;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,194:194:99:5584,578,0
chr4	8224414	rs113477900	T	TGTC	1191.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=3.690;VQSLOD=6.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:354,24,0
chr4	8226678	rs2251114	C	G	398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=10;ExcessHet=3.9794;FS=9.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=0.847;SOR=3.426;VQSLOD=12.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:102,0,236
chr4	8227044	rs2279196	G	A	514.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=14;ExcessHet=3.9794;FS=2.285;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.799;SOR=0.269;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:167,0,324
chr4	8228627	rs1678299	G	C	3235.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=42;ExcessHet=3.9794;FS=11.135;MQ=60.00;MQRankSum=0.00;QD=22.47;ReadPosRankSum=0.382;SOR=2.202;VQSLOD=14.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,19:42:99:0|1:8228627_G_C:639,0,751:8228627
chr4	8228632	rs1678300	A	C	6489.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.35;SOR=4.273;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:8228627_G_C:1788,135,0:8228627
chr4	8228731	rs1281145	T	C	18308.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=216;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=1.304;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,216:216:99:6625,648,0
chr4	8228894	rs1292647	T	C	14511.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=1.300;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5055,485,0
chr4	8228948	rs55642964	T	C	4605.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583e+00;DB;DP=134;ExcessHet=1.5490;FS=3.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=-8.050e-01;SOR=0.962;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,56:134:99:1232,0,2100
chr4	8229218	rs1281146	A	G	15213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=176;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.15;SOR=1.072;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,176:176:99:5466,527,0
chr4	8229326	rs1281147	T	C	17583.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=0.800;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,193:193:99:5914,579,0
chr4	8229713	rs1281148	A	G	17090.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=353;ExcessHet=3.9794;FS=1.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=1.25;SOR=0.795;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:180,173:353:99:4500,0,4471
chr4	8229774	rs1281149	C	T	18792.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=424;ExcessHet=3.9794;FS=1.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=0.518;SOR=0.567;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:191,233:424:99:5276,0,4476
chr4	8230070	rs1281150	T	C	4930.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.420e-01;DB;DP=84;ExcessHet=3.9794;FS=1.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=0.901;SOR=0.714;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1253,0,1037
chr4	8230235	rs1281151	T	C	5445.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=97;ExcessHet=3.9794;FS=0.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=0.755;SOR=0.721;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,47:97:99:1232,0,1085
chr4	8230456	rs1281152	T	G	1015.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=16;ExcessHet=3.9794;FS=1.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=-1.038e+00;SOR=1.276;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:263,0,202
chr4	8233480	rs3756192	C	T	687.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.304e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=-9.100e-02;SOR=1.893;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:128,0,255
chr4	8233943	rs2276947	G	A	497.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=59.18;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=0.484;SOR=2.303;VQSLOD=3.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,128
chr4	8234381	rs3775905	T	C	7169.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DB;DP=167;ExcessHet=1.5490;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.21;ReadPosRankSum=-2.590e-01;SOR=0.679;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,81:167:99:1900,0,2034
chr4	8235396	rs56403236	T	A	461.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=1.5490;FS=3.802;MQ=59.52;MQRankSum=0.00;QD=25.37;ReadPosRankSum=1.38;SOR=1.033;VQSLOD=1.73;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,5:6:65:0|1:8235396_T_A:207,0,65:8235396
chr4	8235401	rs56044431	T	C	483.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=1.5490;FS=4.150;MQ=59.56;MQRankSum=0.00;QD=29.07;ReadPosRankSum=0.792;SOR=1.250;VQSLOD=2.55;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:62:0|1:8235396_T_A:229,0,62:8235396
chr4	8236795	rs3756191	G	T	70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=2.303;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr4	8236935	rs3822209	C	T	476.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=-6.970e-01;SOR=1.179;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:107,0,111
chr4	8237096	rs1678260	G	C	4264.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=1.553;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1228,105,0
chr4	8238151	rs11603	C	T	11363.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.080e-01;DB;DP=352;ExcessHet=1.5490;FS=3.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.223;SOR=0.527;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:189,163:352:99:3895,0,4720
chr4	8242138	rs77888509	G	A	52.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.79;ReadPosRankSum=0.524;SOR=0.307;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,128
chr4	8242216	rs2291071	G	A	679.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.498e+00;DB;DP=22;ExcessHet=3.9794;FS=3.493;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.87;ReadPosRankSum=0.206;SOR=2.041;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:375,0,352
chr4	8242466	rs1281103	A	G	24145.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=274;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=0.808;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,274:274:99:8129,821,0
chr4	8242740	rs8153	G	C	1951.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.220e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=1.64;SOR=1.477;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:378,0,459
chr4	8284084	rs4696789	T	C	1338.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=2.46;SOR=0.743;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:671,0,901
chr4	8288521	rs7692567	G	A	1133.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191e+00;DB;DP=102;ExcessHet=3.0103;FS=2.839;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-6.290e-01;SOR=0.424;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,50:102:99:1142,0,1452
chr4	8288581	rs7678398	A	C	1645.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.66;DB;DP=47;ExcessHet=3.9794;FS=3.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-2.100e-02;SOR=1.218;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:581,0,794
chr4	8288612	rs7678420	A	G	942.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=1.72;SOR=0.813;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:362,0,700
chr4	8288670	rs7684385	T	C	438.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-1.770e-01;SOR=0.941;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:145,0,212
chr4	8293356	rs4696793	G	A	304.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=10;ExcessHet=3.9794;FS=4.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.741;SOR=0.086;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:178,0,179
chr4	8293379	rs4235256	C	A	272.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=1.03;SOR=0.184;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:146,0,106
chr4	8293398	rs4235257	C	T	127.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=1.38;SOR=0.120;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,77
chr4	8293974	rs4235258	C	T	724.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.365e+00;DB;DP=18;ExcessHet=3.9794;FS=8.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.311;SOR=0.086;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:314,0,287
chr4	8294196	rs13130633	C	T	402.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.550e-01;DB;DP=61;ExcessHet=3.0103;FS=7.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.59;ReadPosRankSum=-2.300e-02;SOR=1.782;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,20:61:99:411,0,1115
chr4	8304038	rs4696797	T	C	3010.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.498e+00;DB;DP=36;ExcessHet=3.9794;FS=2.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=1.16;SOR=1.981;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1443,108,0
chr4	8304137	rs13144236	G	A	5978.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=136;ExcessHet=1.5490;FS=0.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=-4.420e-01;SOR=0.788;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4325,407,0
chr4	8358361	rs3733532	G	A	14085.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.977e+00;DB;DP=349;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.15;ReadPosRankSum=-4.920e-01;SOR=0.746;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:173,176:349:99:4487,0,4614
chr4	8368604	rs708244	C	T	227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e+00;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.28;ReadPosRankSum=-1.138e+00;SOR=0.593;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,12:43:99:236,0,875
chr4	8368869	rs827000	C	T	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=27;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.413;SOR=0.338;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:341,0,393
chr4	8368944	rs12646666	C	T	632.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.094;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:97:97,0,129
chr4	8375342	rs2280571	G	A	1342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.138e+00;DB;DP=115;ExcessHet=3.0103;FS=8.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-2.410e-01;SOR=0.870;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,59:115:99:1351,0,1418
chr4	8376402	rs7700122	T	G	1704.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.78;DB;DP=25;ExcessHet=3.9794;FS=2.815;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.60;ReadPosRankSum=0.858;SOR=1.262;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:969,75,0
chr4	8383167	rs2293230	A	G	220.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=-3.600e-02;SOR=1.002;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:229,0,322
chr4	8390859	rs13136987	G	A	535.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.991e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-2.138e+00;SOR=0.425;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,18:29:99:544,0,356
chr4	8398560	rs73209489	A	G	1000.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.493;DB;DP=62;ExcessHet=3.0103;FS=1.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.799;SOR=0.935;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,36:62:99:1009,0,696
chr4	8398930	rs12498652	G	A	122.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-9.100e-02;SOR=0.330;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:131,0,244
chr4	8401260	rs41264711	C	T	1367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=76;ExcessHet=3.0103;FS=2.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=1.20;SOR=1.136;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,48:76:99:1376,0,661
chr4	8415982	rs2245515	C	T	1549.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904e+00;DB;DP=37;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-1.275e+00;SOR=0.651;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,14:37:99:370,0,712
chr4	8416586	rs73211315	T	G	1142.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=1.75;SOR=0.643;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1151,0,1013
chr4	8418148	rs12513296	T	G	1657.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.242e+00;DB;DP=107;ExcessHet=3.0103;FS=0.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.204;SOR=0.585;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,68:107:99:1666,0,959
chr4	8418289	rs55856487	A	G	994.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.979;SOR=0.818;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,37:71:99:1003,0,820
chr4	8443139	rs112997829	C	G	1621.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.468e+00;DB;DP=127;ExcessHet=3.0103;FS=1.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=1.60;SOR=0.565;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,62:127:99:1630,0,1816
chr4	8443312	rs73211351	G	A	237.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=0.179;SOR=1.270;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:246,0,136
chr4	8451559	rs73211375	A	T	801.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e-01;DB;DP=56;ExcessHet=3.0103;FS=2.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-6.080e-01;SOR=0.369;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,33:56:99:810,0,542
chr4	8453663	rs12504328	T	C	1303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.477e+00;DB;DP=118;ExcessHet=3.0103;FS=2.364;MQ=59.84;MQRankSum=-4.800e-02;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-1.089e+00;SOR=0.607;VQSLOD=2.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:62,56:118:99:1312,0,1547
chr4	8454439	rs73211388	C	T	284.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.59;ReadPosRankSum=1.59;SOR=1.609;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:10:293,0,10
chr4	8454469	rs113210446	G	GA	178.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.49;ReadPosRankSum=1.23;SOR=0.818;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,9:17:99:187,0,160
chr4	8454639	rs1880024	A	G	4846.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.710e-01;DB;DP=80;ExcessHet=3.9794;FS=0.959;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=-6.100e-02;SOR=0.626;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2448,239,0
chr4	8454870	rs940134	C	T	267.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.59;ReadPosRankSum=1.04;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr4	8456342	rs12506703	T	C	212.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=1.04;SOR=1.085;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:221,0,134
chr4	8456450	rs113669518	CT	C	876.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.210e-01;DB;DP=69;ExcessHet=3.0103;FS=2.151;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-8.350e-01;SOR=0.422;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,28:69:99:885,0,1388
chr4	8456701	rs2002860	C	G	1391.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.762e+00;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=0.388;SOR=0.814;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:457,0,461
chr4	8467028	rs78294700	G	A	201.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-4.960e-01;SOR=0.693;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:210,0,223
chr4	8467157	rs34873641	A	G	838.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875e+00;DB;DP=51;ExcessHet=3.0103;FS=1.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.556;SOR=0.903;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,32:51:99:847,0,568
chr4	8473050	rs2631768	G	A	1974.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.287e+00;DB;DP=24;ExcessHet=3.0103;FS=4.875;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.643;SOR=0.229;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:759,72,0
chr4	8473136	rs73223242	C	A	136.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=0.431;SOR=1.981;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:28:145,0,28
chr4	8582742	rs17844776	C	T	3335.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870e-01;DB;DP=106;ExcessHet=6.9897;FS=1.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=1.21;SOR=0.613;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,54:106:99:1546,0,1364
chr4	8582856	rs17844777	T	G	6214.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.800e-02;DB;DP=173;ExcessHet=6.9897;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-8.200e-02;SOR=0.641;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,83:173:99:2193,0,2368
chr4	8583312	rs17844778	A	C	15517.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=453;ExcessHet=6.9897;FS=0.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.702;SOR=0.758;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:234,219:453:99:5245,0,5655
chr4	8583475	rs4696848	C	T	1920.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=1.15;SOR=0.738;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,73:161:99:1929,0,2372
chr4	8583585	rs59026373	T	TCA	2806.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.200e-01;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=-1.387e+00;SOR=1.287;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1394,93,0
chr4	8583613	rs28755959	T	G	1551.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.59;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.97;ReadPosRankSum=-7.850e-01;SOR=1.002;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:964,69,0
chr4	8584089	rs9991820	G	C	953.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.732e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=0.951;SOR=0.610;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:36:1|1:8584089_G_C:539,36,0:8584089
chr4	8584095	rs10000720	C	T	1030.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=-6.300e-02;SOR=0.776;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:8584089_G_C:539,36,0:8584089
chr4	8584448	rs6824455	T	C	9473.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.65;DB;DP=143;ExcessHet=3.9794;FS=2.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.057;SOR=0.522;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4773,428,0
chr4	8584472	rs9992205	G	A	1286.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=111;ExcessHet=3.0103;FS=0.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.860;SOR=0.840;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,50:111:99:1295,0,1737
chr4	8584493	rs6857501	C	T	3747.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.132e+00;DB;DP=82;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.369;SOR=0.665;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1111,0,1115
chr4	8584511	rs6857510	C	A	3479.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.026e+00;DB;DP=62;ExcessHet=6.9897;FS=5.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=0.578;SOR=0.315;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,36:62:99:1200,0,859
chr4	8588629	rs3115388	A	G	930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.817e+00;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-3.210e-01;SOR=1.136;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:204,0,427
chr4	8588685	rs3115387	C	T	2493.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=41;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=0.366;SOR=1.012;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:586,0,744
chr4	8589023	rs9685931	G	A	5954.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=278;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.795;SOR=0.714;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:141,137:278:99:3461,0,3473
chr4	8589155	rs9683448	C	T	3567.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.352e+00;DB;DP=93;ExcessHet=6.9897;FS=1.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.380e-01;SOR=0.798;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,48:93:99:1350,0,1405
chr4	8589206	rs10938724	A	G	1968.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=39;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=0.098;SOR=0.783;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:609,0,598
chr4	8589241	rs9799380	C	T	1452.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.45;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=-2.180e-01;SOR=0.721;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,10:21:99:0|1:8589241_C_T:372,0,479:8589241
chr4	8589263	rs9799717	T	G	1206.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=0.847;SOR=0.534;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,8:15:99:0|1:8589241_C_T:350,0,382:8589241
chr4	8589282	rs9799807	G	C	982.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=-4.870e-01;SOR=0.573;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:8589241_C_T:321,0,144:8589241
chr4	8594574	rs2302583	T	C	6379.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-01;DB;DP=135;ExcessHet=3.9794;FS=0.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=-3.500e-02;SOR=0.778;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,71:135:99:1928,0,1687
chr4	8594815	rs4411969	T	G	6008.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=97;ExcessHet=3.9794;FS=2.145;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.26;ReadPosRankSum=0.384;SOR=0.567;VQSLOD=6.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,52:97:99:1335,0,1102
chr4	8601278	rs41289049	C	T	837.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367e+00;DB;DP=112;ExcessHet=3.0103;FS=0.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.48;ReadPosRankSum=0.983;SOR=0.788;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,42:112:99:846,0,1781
chr4	8601298	rs11723641	G	A	748.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077e+00;DB;DP=113;ExcessHet=3.0103;FS=0.725;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.62;ReadPosRankSum=0.176;SOR=0.691;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,41:113:99:757,0,1696
chr4	8602793	rs4299567	T	C	4118.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=5.186;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:78:1|1:8602793_T_C:1170,78,0:8602793
chr4	8602798	rs2241069	G	C	4406.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.27;SOR=5.464;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:81:1|1:8602793_T_C:1195,81,0:8602793
chr4	8602816	rs4594711	A	G	5336.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.11;SOR=4.737;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:8602793_T_C:1338,93,0:8602793
chr4	8602884	rs4301095	T	C	13095.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.32;SOR=1.873;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4295,390,0
chr4	8602935	rs4431213	A	G	20613.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=231;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=30.91;SOR=1.424;VQSLOD=3.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,231:231:99:6875,692,0
chr4	8605933	rs41266531	A	G	871.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740e+00;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-5.410e-01;SOR=0.648;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,33:54:99:880,0,585
chr4	8606080	rs16842643	A	G	136.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.120;SOR=2.712;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:145,0,109
chr4	8607587	rs4696703	G	A	7413.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=5.572;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1665,126,0
chr4	8608634	rs2302580	C	T	7473.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=123;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=-3.660e-01;SOR=0.692;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,68:123:99:1845,0,1368
chr4	8608934	rs2302579	C	T	1457.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.759e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.51;ReadPosRankSum=-7.080e-01;SOR=0.721;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:531,45,0
chr4	8608979	rs2302578	G	A	3675.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=-1.185e+00;SOR=0.879;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1465,132,0
chr4	8612691	rs13112040	G	A	73.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:74:81,0,74
chr4	8612760	rs201383909	CTT	C	420.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.099;SOR=0.693;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,11:22:99:429,0,429
chr4	8613917	rs12511563	C	G	1224.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.39;SOR=2.030;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:8613917_C_G:557,39,0:8613917
chr4	8613918	rs12508541	G	T	1009.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.92;SOR=1.828;VQSLOD=18.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:39:1|1:8613917_C_G:557,39,0:8613917
chr4	8613961	rs13120023	G	A	232.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.91;SOR=2.303;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr4	8616054	rs2302572	C	T	6414.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=77;ExcessHet=3.9794;FS=1.196;MQ=59.94;MQRankSum=0.870;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=0.997;SOR=0.842;VQSLOD=1.74;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,32:77:99:0|1:8616054_C_T:1257,0,1787:8616054
chr4	8616070	rs2302571	T	C	7941.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.040e-01;DB;DP=100;ExcessHet=3.9794;FS=2.190;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=0.910;SOR=0.843;VQSLOD=6.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:56,44:100:99:0|1:8616054_C_T:1524,0,2133:8616054
chr4	8616096	rs1131140	T	C	11892.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.950e-01;DB;DP=117;ExcessHet=3.0103;FS=2.283;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.49;ReadPosRankSum=-1.013e+00;SOR=0.862;VQSLOD=6.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4249,351,0
chr4	8616179	rs7378066	T	C	17672.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=0.783;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5363,530,0
chr4	8620045	rs4444816	A	G	4352.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=2.522;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1006,75,0
chr4	8620103	rs7670383	C	T	1806.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.520;SOR=0.681;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:845,0,455
chr4	8620325	rs4696872	A	G	4992.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.67;SOR=2.143;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1662,156,0
chr4	8620848	rs73213402	G	A	500.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=26;ExcessHet=3.9794;FS=1.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=1.93;SOR=0.380;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:372,0,312
chr4	8620873	rs13132404	G	A	2124.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=31;ExcessHet=3.9794;FS=2.570;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=0.653;SOR=1.230;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:361,0,472
chr4	8621194	rs28514374	A	G	17875.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=0.775;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5687,558,0
chr4	8621386	rs1050464	A	G	4330.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=0.781;SOR=0.729;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,35:71:99:900,0,824
chr4	8621480	rs6816032	G	C	2754.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.64;SOR=2.303;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:935,84,0
chr4	8621566	rs57995089	G	GC	1102.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.41;SOR=2.517;VQSLOD=6.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:304,27,0
chr4	8869257	rs13303067	A	G	849.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.72;SOR=6.091;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr4	8869587	rs13303225	T	C	3156.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.69;SOR=0.715;VQSLOD=17.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:963,84,0
chr4	8872798	rs202111656	C	CG	223.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=3.912;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	8872812	rs4382116	A	C	263.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=4.174;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr4	8873450	rs4074895	C	G	39.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=19.59;SOR=0.693;VQSLOD=14.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	8873470	rs4074894	A	C	39.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=19.59;SOR=0.693;VQSLOD=15.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	8951816	rs3952877	A	G	11909.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=57.00;POSITIVE_TRAIN_SITE;QD=33.93;SOR=1.198;VQSLOD=3.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3270,288,0
chr4	9157388	rs150547742	A	T	1114.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=58.45;QD=33.78;SOR=1.981;VQSLOD=3.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:263,24,0
chr4	9370690	rs10032245	G	C	6098.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.19;DB;DP=232;ExcessHet=6.9897;FS=13.588;MQ=43.28;MQRankSum=-2.045e+00;POSITIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=1.65;SOR=1.829;VQSLOD=-4.734e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:212,20:232:99:109,0,6900
chr4	9370908	rs11938651	C	T	2049.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.139;DB;DP=13;ExcessHet=3.0103;FS=15.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.15;ReadPosRankSum=2.42;SOR=4.212;VQSLOD=11.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:536,39,0
chr4	9370948	rs6858036	C	G	1216.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=6.932;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr4	9384846	rs12509371	C	G	2388.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.43;SOR=2.242;VQSLOD=5.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:724,66,0
chr4	9385195	rs34164559	A	AG	786.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=42.19;QD=32.05;SOR=1.179;VQSLOD=4.90;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:9385195_A_AG:215,15,0:9385195
chr4	9385199	rs57268491	C	T	820.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=40.97;QD=36.67;SOR=1.179;VQSLOD=-5.111e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:15:1|1:9385195_A_AG:215,15,0:9385195
chr4	9385855	rs6834525	G	T	13495.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.951e+00;DB;DP=153;ExcessHet=3.0103;FS=0.613;MQ=58.24;MQRankSum=6.68;QD=24.06;ReadPosRankSum=-1.060e+00;SOR=0.618;VQSLOD=-3.794e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,153:153:99:5181,460,0
chr4	9387155	rs6449145	C	T	8716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=59.40;POSITIVE_TRAIN_SITE;QD=32.40;SOR=1.344;VQSLOD=4.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2356,222,0
chr4	9387204	rs6449148	A	G	11202.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=59.42;POSITIVE_TRAIN_SITE;QD=33.95;SOR=1.228;VQSLOD=4.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3353,297,0
chr4	9387254	rs34260096	AT	A	9559.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.840e-01;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=58.96;MQRankSum=-3.500e-01;QD=26.41;ReadPosRankSum=1.69;SOR=1.283;VQSLOD=0.086;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3165,339,0
chr4	9390521	rs6846545	A	G	2202.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=57.49;POSITIVE_TRAIN_SITE;QD=33.18;SOR=3.076;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:669,54,0
chr4	9390660	rs6851747	A	G	5647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=57.96;POSITIVE_TRAIN_SITE;QD=34.23;SOR=0.807;VQSLOD=3.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1521,135,0
chr4	9400699	rs55668117	C	CTG	615.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=53.35;QD=27.54;SOR=3.912;VQSLOD=3.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	9400930	rs6449271	A	G	1304.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=52.72;QD=31.06;SOR=1.721;VQSLOD=1.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:370,33,0
chr4	9446325	rs67703456	AG	A	3300.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.75;QD=31.33;SOR=4.880;VQSLOD=5.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:943,72,0
chr4	9485841	rs10212937	T	C	10749.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=48.23;QD=33.38;SOR=1.102;VQSLOD=-2.789e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2939,271,0
chr4	9514668	rs13108672	C	T	5136.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=34.02;SOR=1.429;VQSLOD=4.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1788,161,0
chr4	9514819	rs13108939	C	A	10305.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=58.82;QD=33.24;SOR=0.889;VQSLOD=2.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3335,296,0
chr4	9515080	.	A	C	939.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DP=54;ExcessHet=3.0103;FS=9.244;MQ=53.61;MQRankSum=-5.117e+00;QD=17.39;ReadPosRankSum=1.00;SOR=0.126;VQSLOD=-2.369e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,32:54:99:948,0,658
chr4	9515121	rs13109658	C	T	3980.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=58.29;QD=28.71;SOR=1.308;VQSLOD=2.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1572,129,0
chr4	9515174	rs12499381	C	T	3366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=33.67;SOR=0.909;VQSLOD=4.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1125,108,0
chr4	9700032	rs6847312	T	G	5639.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.20;POSITIVE_TRAIN_SITE;QD=30.92;SOR=1.027;VQSLOD=4.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:9700032_T_G:1849,126,0:9700032
chr4	9700056	rs6448969	G	A	4971.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.19;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.21;MQRankSum=-1.036e+00;QD=28.54;ReadPosRankSum=-4.900e-02;SOR=0.787;VQSLOD=-5.035e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,47:47:99:1|1:9700032_T_G:2115,141,0:9700032
chr4	9700062	rs7434710	G	A	4794.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.335;DB;DP=44;ExcessHet=3.0103;FS=0.893;MQ=59.16;MQRankSum=-9.940e-01;NEGATIVE_TRAIN_SITE;QD=32.50;ReadPosRankSum=-5.700e-02;SOR=0.580;VQSLOD=-7.856e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:9700032_T_G:2050,138,0:9700032
chr4	9707682	rs13101652	A	G	1947.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.18;POSITIVE_TRAIN_SITE;QD=30.92;SOR=0.790;VQSLOD=3.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:597,60,0
chr4	9707740	rs13122952	G	A	1225.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.680e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.47;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.90;ReadPosRankSum=0.618;SOR=0.976;VQSLOD=2.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:464,39,0
chr4	9707827	rs13101880	A	G	624.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.33;SOR=4.174;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr4	9711634	rs66534644	C	G	7193.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.477e+00;DB;DP=84;ExcessHet=3.0103;FS=0.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=0.465;SOR=0.624;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2620,252,0
chr4	9783428	rs2076907	G	C	2283.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=6.630;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:629,45,0
chr4	9784631	rs6283	C	T	27608.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=351;ExcessHet=3.0103;FS=0.702;MQ=59.90;MQRankSum=-1.166e+00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=2.00;SOR=0.602;VQSLOD=1.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,351:351:99:10935,1051,0
chr4	9785134	rs1967551	T	C	1986.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=35.58;SOR=7.701;VQSLOD=6.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:769,54,0
chr4	9888994	rs4697904	C	T	672.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=2.093;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:181,18,0
chr4	9889042	rs4697905	T	C	1192.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.80;SOR=2.235;VQSLOD=20.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:239,21,0
chr4	9889069	rs6836878	C	T	747.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.955e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=0.245;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:526,42,0
chr4	9909923	rs2280205	G	A	3935.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.570e-01;DB;DP=95;ExcessHet=1.5490;FS=2.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.11;ReadPosRankSum=-9.100e-01;SOR=0.628;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2813,282,0
chr4	9921931	rs6823877	T	C	1719.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=0.408;SOR=0.516;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:414,0,472
chr4	9981997	rs13145758	G	A	407.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.17;SOR=3.442;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:217,18,0
chr4	9982029	rs13125029	A	G	800.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=1.931;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:234,21,0
chr4	9982044	rs13125209	A	C	1009.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.589;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.55;ReadPosRankSum=1.59;SOR=0.968;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:349,36,0
chr4	9982191	rs13115193	C	T	1110.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=28;ExcessHet=3.9794;FS=2.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=1.47;SOR=0.419;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:315,0,522
chr4	9982330	rs13125646	A	G	9127.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.27;DB;DP=104;ExcessHet=3.0103;FS=5.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-8.900e-02;SOR=0.381;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3247,311,0
chr4	9987226	rs3733590	T	C	984.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.850e-01;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-2.550e-01;SOR=0.767;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:514,0,288
chr4	9998213	rs10640118	A	AGCCTG	298.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=3;ExcessHet=6.9897;FS=3.274;MQ=60.00;MQRankSum=0.00;QD=17.59;ReadPosRankSum=-1.350e-01;SOR=0.148;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:64:81,0,64
chr4	9998376	rs16891971	C	A	350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=38;ExcessHet=3.0103;FS=4.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.167;SOR=1.516;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:359,0,578
chr4	9998440	rs10939650	C	T	2660.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.180e-01;DB;DP=54;ExcessHet=6.9897;FS=1.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.172;SOR=0.843;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,34:54:99:795,0,439
chr4	9998493	rs13113918	A	G	5427.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DB;DP=60;ExcessHet=3.9794;FS=2.414;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=0.944;SOR=0.527;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,36:60:99:956,0,535
chr4	9998605	rs28592748	T	C	4631.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-01;DB;DP=51;ExcessHet=3.9794;FS=1.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=-1.004e+00;SOR=0.783;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,28:51:99:645,0,539
chr4	10020480	rs2240720	C	T	509.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=2.88;SOR=0.542;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:143,0,218
chr4	10020564	rs2240721	G	A	1140.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-2.280e-01;SOR=0.736;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:325,0,488
chr4	10020757	rs2240722	A	G	2243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DB;DP=53;ExcessHet=6.9897;FS=3.239;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-9.830e-01;SOR=0.852;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,21:53:99:480,0,815
chr4	10022981	rs2276961	C	T	1799.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;DB;DP=58;ExcessHet=6.9897;FS=2.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-2.940e-01;SOR=0.530;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,23:58:99:549,0,870
chr4	10027354	rs6819833	C	G	113.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=-4.310e-01;SOR=1.329;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:122,0,63
chr4	10027509	rs61256984	GA	G	220.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DB;DP=29;ExcessHet=3.0103;FS=1.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.16;ReadPosRankSum=1.82;SOR=0.666;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,11:29:99:229,0,390
chr4	10027542	rs6820230	C	T	281.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.942;SOR=0.775;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:290,0,516
chr4	10027643	rs6449237	A	G	368.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.280e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=1.91;SOR=0.804;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:377,0,620
chr4	10027744	rs6449238	G	A	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.89;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:207,0,265
chr4	10080462	rs2241469	A	C	3665.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=81;ExcessHet=6.9897;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=0.021;SOR=0.840;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,48:81:99:1248,0,736
chr4	10084570	rs2241470	T	G	635.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=0.522;SOR=1.931;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:185,0,204
chr4	10086015	rs2241474	T	C	4941.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=73;ExcessHet=3.9794;FS=1.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=-4.340e-01;SOR=0.850;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,32:73:99:846,0,968
chr4	10086188	rs2241475	T	G	2466.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=111;ExcessHet=3.9794;FS=3.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.841;SOR=0.980;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,53:111:99:1349,0,1374
chr4	10090178	rs4235349	T	C	14180.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=1.150;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4528,456,0
chr4	10094671	rs3822247	G	A	2424.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.724;DB;DP=101;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=1.52;SOR=0.693;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,55:101:99:1304,0,997
chr4	10094783	rs3822245	T	C	4062.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.920e-01;DB;DP=130;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=-8.200e-01;SOR=0.715;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,77:130:99:1779,0,1108
chr4	10094904	rs3822242	T	C	1154.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.757e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=0.971;SOR=1.057;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,23:31:99:771,0,229
chr4	10094931	rs3822241	G	A	566.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=0.851;SOR=0.544;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:428,0,162
chr4	10099340	rs13441	T	C	1836.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e+00;DB;DP=54;ExcessHet=6.9897;FS=3.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.555;SOR=0.462;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,28:54:99:649,0,692
chr4	10099542	.	CAA	C,CA	348.96	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.87;DP=12;ExcessHet=3.9794;FS=1.468;MQ=60.00;MQRankSum=0.00;QD=9.69;ReadPosRankSum=0.00;SOR=1.121;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,5,5:12:70:205,70,101,74,0,73
chr4	10100801	rs2241484	T	C	427.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=7;ExcessHet=6.9897;FS=12.798;MQ=59.83;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=0.179;SOR=3.767;VQSLOD=-2.603e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,105
chr4	10100812	rs2241485	A	G	523.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.461;DB;DP=6;ExcessHet=6.9897;FS=6.181;MQ=59.85;MQRankSum=0.00;QD=16.88;ReadPosRankSum=-1.260e+00;SOR=0.122;VQSLOD=4.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:50:109,0,50
chr4	10105797	rs3756223	T	C	1226.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=41;ExcessHet=3.9794;FS=2.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=1.23;SOR=0.421;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:674,0,574
chr4	10105917	rs4697919	G	C	660.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.61;SOR=5.549;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr4	10118377	rs11557743	C	G	2930.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DB;DP=129;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=1.19;SOR=0.668;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,73:129:99:1700,0,1283
chr4	10444650	rs3217	C	T	1251.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.340e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.10;ReadPosRankSum=-1.349e+00;SOR=3.202;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:38:466,38,0
chr4	10446385	rs9291410	C	T	9855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.07;SOR=0.898;VQSLOD=5.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3218,296,0
chr4	10446906	rs10016022	A	G	10899.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.144e+00;DB;DP=141;ExcessHet=3.0103;FS=0.652;MQ=59.99;MQRankSum=-9.800e-01;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=-9.290e-01;SOR=0.629;VQSLOD=2.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4240,423,0
chr4	10447985	rs35177766	AT	A	4136.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.045;DB;DP=52;ExcessHet=3.0103;FS=8.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.73;ReadPosRankSum=0.517;SOR=1.754;VQSLOD=5.31;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1866,156,0
chr4	10491852	rs11725527	A	G	395.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.35;SOR=4.804;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:177,12,0
chr4	10502937	rs2903960	T	G	5103.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=1.096;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1249,120,0
chr4	10503266	rs10022649	T	C	369.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.44;SOR=1.179;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:246,24,0
chr4	10509699	rs2868941	T	C	4860.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.931e+00;DB;DP=68;ExcessHet=3.0103;FS=2.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=-7.090e-01;SOR=0.471;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2090,204,0
chr4	10525711	rs148908322	A	AGAG	1192.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.45;SOR=0.997;VQSLOD=4.90;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:218,15,0
chr4	10527342	rs2108878	C	T	3625.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.731e+00;DB;DP=42;ExcessHet=3.0103;FS=1.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.11;ReadPosRankSum=2.13;SOR=0.513;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1381,125,0
chr4	10542058	rs1962796	C	G	9227.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=170;ExcessHet=3.9794;FS=0.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=-1.170e-01;SOR=0.619;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,81:170:99:1896,0,2181
chr4	10559817	rs4698070	A	G	76.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=2.303;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	10586384	rs12640119	G	T	92.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-1.068e+00;SOR=0.495;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:101,0,154
chr4	10599670	rs75741253	G	T	526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085e+00;DB;DP=44;ExcessHet=3.0103;FS=2.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.604;SOR=1.079;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:535,0,467
chr4	10669522	rs13136927	A	C	5170.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=0.4576;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=30.60;SOR=0.778;VQSLOD=4.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2655,269,0
chr4	10669871	rs13116161	C	G	283.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.24;SOR=4.174;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	11370295	rs6448673	C	G	776.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.19;SOR=2.531;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:270,24,0
chr4	11370592	rs6448674	T	C	1423.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380e-01;DB;DP=31;ExcessHet=1.5490;FS=7.356;MQ=60.00;MQRankSum=0.00;QD=21.25;ReadPosRankSum=-1.983e+00;SOR=0.948;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:250,0,543
chr4	11370800	rs28649249	T	C	71.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=2.303;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	11400467	rs77935499	A	T	138.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:147,0,126
chr4	13529990	rs59341143	G	C	728.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=59;ExcessHet=3.0103;FS=1.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-1.025e+00;SOR=0.859;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,28:59:99:737,0,824
chr4	13530604	rs73100440	T	C	982.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796e+00;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.757;SOR=0.634;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,39:72:99:991,0,900
chr4	13530784	rs10020715	C	T	334.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-1.460e+00;SOR=0.772;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:343,0,628
chr4	13530824	rs10034452	T	G	110.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087e+00;DB;DP=17;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.49;ReadPosRankSum=-3.160e-01;SOR=0.160;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:119,0,402
chr4	13545792	rs9684692	G	T	11159.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=168;ExcessHet=3.9794;FS=1.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=0.629;SOR=0.741;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,75:168:99:1937,0,2376
chr4	13548796	rs2080023	T	G	15501.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.55;ReadPosRankSum=1.69;SOR=0.428;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5799,522,0
chr4	13571901	rs7661090	C	T	283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182e+00;DB;DP=15;ExcessHet=3.0103;FS=2.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=-1.840e-01;SOR=1.802;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:292,0,155
chr4	13577519	.	CT	C	203.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DP=13;ExcessHet=3.9794;FS=1.342;MQ=59.89;MQRankSum=0.00;QD=5.23;ReadPosRankSum=0.798;SOR=0.482;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:13:49:49,0,78
chr4	13578405	rs2052159	A	G	2635.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.95;SOR=4.014;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1014,78,0
chr4	13583011	rs7698741	C	T	241.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.21;SOR=3.912;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr4	13589212	rs6838908	A	G	914.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=0.00;SOR=4.003;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:77,0,68
chr4	13589495	rs13104252	G	A	2414.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.260e-01;DB;DP=30;ExcessHet=3.9794;FS=3.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.91;ReadPosRankSum=0.310;SOR=1.317;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:427,0,429
chr4	13593336	rs758975	A	G	1095.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.46;SOR=2.546;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr4	13606576	rs1971278	A	T	12140.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=126;ExcessHet=3.0103;FS=1.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=0.881;SOR=0.946;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,56:126:99:1504,0,1904
chr4	13608523	rs6822260	G	A	329.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=4.407;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	13615293	rs2109917	C	A	8886.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=80;ExcessHet=3.0103;FS=13.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.43;ReadPosRankSum=-3.050e-01;SOR=1.651;VQSLOD=14.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,36:80:99:1081,0,1061
chr4	13627815	rs12504847	C	T	405.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=0.652;SOR=1.179;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,103
chr4	13629437	rs34798341	G	T	238.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-1.650e-01;SOR=0.892;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:247,0,335
chr4	13629682	rs13435267	C	T	1029.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.510;SOR=0.693;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1038,0,1022
chr4	13629721	rs12499127	G	A	3561.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;DB;DP=56;ExcessHet=3.0103;FS=0.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=-1.480e-01;SOR=0.909;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:628,0,741
chr4	15004655	rs7435318	G	A	18722.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.230e-01;DB;DP=349;ExcessHet=3.9794;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=-1.720e-01;SOR=0.602;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:183,166:349:99:3969,0,4696
chr4	15005408	rs182583918	G	A	939.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017e+00;DB;DP=39;ExcessHet=3.0103;FS=10.571;MQ=60.00;MQRankSum=0.00;QD=24.08;ReadPosRankSum=0.419;SOR=3.193;VQSLOD=12.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,31:39:99:948,0,205
chr4	15005604	rs112476821	G	A	9981.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.630e-01;DB;DP=193;ExcessHet=1.5490;FS=1.401;MQ=60.00;MQRankSum=0.00;QD=21.99;ReadPosRankSum=-2.880e-01;SOR=0.545;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,89:193:99:2174,0,2637
chr4	15009232	rs1874207	C	T	732.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.19;ReadPosRankSum=-7.000e-01;SOR=0.456;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:114,0,148
chr4	15059987	rs987399	A	G	1439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=30;ExcessHet=3.9794;FS=8.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=-1.109e+00;SOR=1.681;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,13:30:99:0|1:15059987_A_G:479,0,1133:15059987
chr4	15059988	rs1349999	A	G	1439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=29;ExcessHet=3.9794;FS=8.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=-8.190e-01;SOR=1.628;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,12:29:99:0|1:15059987_A_G:479,0,1133:15059987
chr4	15063510	rs34691405	T	G	188.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=1.38;SOR=1.609;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:74,0,64
chr4	15067580	rs3749570	T	G	445.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=2.57;SOR=0.776;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:272,0,132
chr4	15443644	rs35426021	CA	C	525.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.00;SOR=0.562;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:71:187,0,71
chr4	15443685	rs13108125	T	G	3363.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.31;DB;DP=45;ExcessHet=3.9794;FS=0.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.817;SOR=0.566;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1586,135,0
chr4	15444544	rs2110362	C	A	97.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:106,0,72
chr4	15477812	rs13118306	C	G	350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.94;ReadPosRankSum=0.338;SOR=0.941;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:92:359,0,92
chr4	15480225	rs9993580	A	C	656.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.51;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=2.51;SOR=1.802;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:254,18,0
chr4	15482477	rs10000250	A	G	5029.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.47;DB;DP=77;ExcessHet=3.9794;FS=2.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=0.894;SOR=0.678;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2332,231,0
chr4	15482809	rs6810461	G	A	237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.700e-02;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.98;ReadPosRankSum=0.018;SOR=0.821;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:246,0,558
chr4	15503994	rs144502190	T	TTTTTC	520.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=11;ExcessHet=3.9794;FS=2.192;MQ=60.00;MQRankSum=0.00;QD=22.62;ReadPosRankSum=0.577;SOR=1.460;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,3:11:99:252,0,429
chr4	15513147	rs1058412	C	T	355.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.830e-01;DB;DP=38;ExcessHet=3.0103;FS=1.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-1.105e+00;SOR=1.008;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,15:38:99:364,0,619
chr4	15517756	rs58218122	AT	A	1049.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=42;ExcessHet=6.9897;FS=4.264;MQ=60.00;MQRankSum=0.00;QD=9.05;ReadPosRankSum=-1.018e+00;SOR=0.365;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,23:42:99:536,0,267
chr4	15521403	rs73235032	G	A	78.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.430e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.02;ReadPosRankSum=-6.380e-01;SOR=1.022;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:87:87,0,191
chr4	15530124	rs4698395	C	A	274.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.00;SOR=0.813;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:283,0,394
chr4	15535095	rs7687556	A	G	653.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.40;SOR=5.892;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr4	15538744	rs1558572	T	G	2279.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=2.269;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1055,96,0
chr4	15539498	rs1861044	A	G	3509.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=66;ExcessHet=1.5490;FS=1.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=-1.930e-01;SOR=0.973;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,32:66:99:898,0,826
chr4	15539779	rs17476642	C	T	571.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DB;DP=38;ExcessHet=3.0103;FS=3.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.250;SOR=0.316;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:580,0,445
chr4	15552295	rs2041672	A	G	539.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.751e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=-1.012e+00;SOR=0.495;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,20:31:99:548,0,283
chr4	15552423	rs2041673	C	T	986.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.788e+00;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=-9.490e-01;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-3.800e-01;SOR=0.679;VQSLOD=2.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,40:78:99:995,0,1036
chr4	15560750	rs35309200	G	T	318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.366e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.953;SOR=1.022;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:327,0,300
chr4	15562013	rs17476879	C	T	903.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687e+00;DB;DP=67;ExcessHet=3.0103;FS=5.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-6.930e-01;SOR=0.280;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,39:67:99:912,0,698
chr4	15565208	rs34831330	T	C	60.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.140e-01;DB;DP=8;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.53;ReadPosRankSum=-7.030e-01;SOR=0.061;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:69:69,0,158
chr4	15568992	rs13121363	T	C	2736.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.176e+00;DB;DP=29;ExcessHet=3.0103;FS=4.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-3.230e-01;SOR=1.364;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:86:908,86,0
chr4	15569146	rs13116304	A	C	3709.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.216e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=-4.100e-02;SOR=0.631;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1323,132,0
chr4	15575718	rs4280723	C	G	1049.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.40;DB;DP=6;ExcessHet=3.0103;FS=6.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.37;ReadPosRankSum=0.050;SOR=2.786;VQSLOD=18.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:266,18,0
chr4	15581985	rs6449149	A	G	639.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.640e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.07;ReadPosRankSum=-4.090e-01;SOR=0.495;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	15587897	rs6832789	A	T	6080.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.587e+00;DB;DP=87;ExcessHet=3.0103;FS=0.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=0.068;SOR=0.588;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2517,261,0
chr4	15589314	rs6449150	C	G	1173.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=0.087;SOR=1.464;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:190,0,179
chr4	15597984	rs10212939	C	T	601.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=5.549;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0
chr4	15598051	rs35816693	T	TAA	159.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=3.258;VQSLOD=6.31;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr4	15602771	.	C	CTT	199.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.50;ReadPosRankSum=0.351;SOR=0.616;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,6:21:99:0|1:15602771_C_CTT:207,0,603:15602771
chr4	15602772	.	AC	A	199.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.260e-01;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.50;ReadPosRankSum=0.468;SOR=0.616;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,6:21:99:0|1:15602771_C_CTT:207,0,603:15602771
chr4	15602773	rs80080596	C	CTTA,*	3480.75	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.980e-01;DB;DP=21;ExcessHet=3.0103;FS=2.834;MQ=59.96;MQRankSum=-8.950e-01;POSITIVE_TRAIN_SITE;QD=32.23;ReadPosRankSum=-1.490e-01;SOR=1.412;VQSLOD=0.962;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,15,6:21:99:927,255,207,627,0,603
chr4	15603069	rs1134634	G	C	2231.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=-2.130e-01;SOR=0.567;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:462,0,264
chr4	15613780	rs9884443	T	C	599.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.31;ReadPosRankSum=-1.383e+00;SOR=3.500;VQSLOD=17.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:155,12,0
chr4	15614179	rs73239175	T	C	106.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:115,0,66
chr4	15629803	rs4698402	G	A	619.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-5.250e-01;SOR=2.200;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:419,30,0
chr4	15632228	rs3775956	A	G	1434.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.89;ReadPosRankSum=0.122;SOR=1.358;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1131,90,0
chr4	15640168	rs3182730	C	T	996.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;DB;DP=83;ExcessHet=3.0103;FS=0.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=0.620;SOR=0.818;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1005,0,928
chr4	15656696	rs141324869	G	A	331.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.832e+00;DB;DP=31;ExcessHet=3.0103;FS=4.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=1.06;SOR=0.086;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:340,0,709
chr4	15657636	rs16892232	C	G	196.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=0.366;SOR=0.527;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:21:205,0,21
chr4	15688604	rs2302469	G	C	976.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.600;DB;DP=56;ExcessHet=3.0103;FS=1.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=0.800;SOR=0.542;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,33:56:99:985,0,557
chr4	15689632	rs11729955	G	A	3497.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.920e+00;DB;DP=70;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-2.190e-01;SOR=0.738;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2463,209,0
chr4	15690233	rs6449160	C	A	5234.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=56.33;POSITIVE_TRAIN_SITE;QD=34.21;SOR=1.375;VQSLOD=3.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1359,117,0
chr4	15705007	.	A	T	32.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e+00;DP=15;ExcessHet=3.0103;FS=3.136;MQ=59.01;MQRankSum=-1.465e+00;NEGATIVE_TRAIN_SITE;QD=2.20;ReadPosRankSum=2.16;SOR=2.066;VQSLOD=-2.689e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,6:15:39:39,0,258
chr4	15705039	rs2302467	T	G	268.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=56.78;MQRankSum=1.06;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=0.728;SOR=1.022;VQSLOD=-3.959e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:55:277,0,55
chr4	15706466	rs3756247	T	C	2195.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.21;DB;DP=57;ExcessHet=3.9794;FS=1.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.286;SOR=0.826;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,34:57:99:957,0,541
chr4	15706502	rs35181008	G	GTC	5682.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.851;DB;DP=77;ExcessHet=1.5490;FS=1.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=-2.770e-01;SOR=0.837;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,77:77:99:3448,238,0
chr4	15706790	rs3756246	T	A	938.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=0.680;SOR=0.941;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:591,48,0
chr4	15706920	rs55735476	C	T	396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.860e-01;DB;DP=23;ExcessHet=3.0103;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=0.194;SOR=1.473;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:405,0,185
chr4	15709192	rs2302465	G	A	811.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=83;ExcessHet=3.0103;FS=2.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=-1.056e+00;SOR=0.819;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,38:83:99:820,0,1082
chr4	15737863	rs4273468	G	A	1146.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DB;DP=31;ExcessHet=3.9794;FS=1.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-3.900e-02;SOR=0.524;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:432,0,369
chr4	15737890	rs4613561	T	C	954.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056e+00;DB;DP=27;ExcessHet=3.9794;FS=0.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.898;SOR=0.947;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:370,0,352
chr4	15737937	rs4538475	A	G	818.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DB;DP=16;ExcessHet=3.9794;FS=4.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=1.52;SOR=0.214;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:305,0,164
chr4	15739390	rs4263397	T	G	2302.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=76;ExcessHet=3.9794;FS=2.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-6.110e-01;SOR=0.708;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,34:76:99:860,0,965
chr4	15739416	rs3900588	G	C	675.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=73;ExcessHet=3.0103;FS=2.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.629;SOR=0.859;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,27:73:99:684,0,1123
chr4	15739428	rs4320134	A	T	1697.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=71;ExcessHet=3.9794;FS=0.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.58;SOR=0.615;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,26:71:99:585,0,1066
chr4	15739488	rs4283655	A	G	4893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=2.032;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1498,132,0
chr4	15739498	rs997250	A	G	318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=38;ExcessHet=3.0103;FS=3.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.38;ReadPosRankSum=-5.080e-01;SOR=1.520;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,13:38:99:327,0,614
chr4	15780443	rs6816391	T	G	1165.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.53;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=1.04;SOR=0.660;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:15780443_T_G:526,36,0:15780443
chr4	15780453	rs6449182	C	G	433.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.97;SOR=3.258;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:15780443_T_G:450,30,0:15780443
chr4	15839820	rs11574926	T	C	362.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=-1.300e-02;SOR=0.534;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,14:44:99:371,0,914
chr4	15937731	rs2072313	T	C	12000.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.39;SOR=0.872;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3127,294,0
chr4	15964040	rs2286460	G	A	2847.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154e+00;DB;DP=75;ExcessHet=1.5490;FS=1.737;MQ=59.97;MQRankSum=1.01;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=1.14;SOR=0.916;VQSLOD=2.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,37:75:99:996,0,1058
chr4	15964485	rs758329	G	A	3674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=140;ExcessHet=3.9794;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.377;SOR=0.605;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,56:140:99:1490,0,2251
chr4	15964501	rs2286459	G	A	6320.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DB;DP=140;ExcessHet=1.5490;FS=3.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=0.532;SOR=0.736;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,83:140:99:2301,0,1451
chr4	15964573	rs758328	A	G	10699.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.240e-01;DB;DP=143;ExcessHet=3.0103;FS=2.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=-8.000e-02;SOR=0.510;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4698,429,0
chr4	15964763	rs4698432	C	T	1611.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.73;DB;DP=61;ExcessHet=3.9794;FS=2.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=0.903;SOR=1.022;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,31:61:99:877,0,777
chr4	15964863	rs4698433	G	T	250.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=1.49;SOR=0.307;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,257
chr4	15972549	rs3857147	G	A	405.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.040;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=1.47;SOR=1.739;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr4	15972905	rs11735976	T	C	453.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.81;DB;DP=22;ExcessHet=3.0103;FS=11.083;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=0.00;SOR=3.767;VQSLOD=12.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:462,0,239
chr4	15977523	rs3796862	T	C	576.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=0.703;SOR=3.737;VQSLOD=14.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:70,0,37
chr4	15977572	rs11734657	T	C	2229.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.62;SOR=3.219;VQSLOD=19.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:516,39,0
chr4	15977731	rs3796861	C	T	545.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.317;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=1.27;SOR=0.713;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,25:60:99:554,0,827
chr4	15977823	rs3796860	A	C	921.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=50;ExcessHet=3.0103;FS=2.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=1.53;SOR=0.350;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,24:50:99:0|1:15977823_A_C:930,0,1379:15977823
chr4	15977828	rs3796859	C	G	945.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=50;ExcessHet=3.0103;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=1.52;SOR=0.337;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,25:50:99:0|1:15977823_A_C:954,0,1355:15977823
chr4	15977980	rs3796858	C	A	288.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=-1.922e+00;SOR=1.179;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:57:297,0,57
chr4	15981332	rs9685492	C	T	551.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.98;SOR=5.421;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr4	15981874	rs73230219	A	C	684.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=2.049;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:15981874_A_C:701,48,0:15981874
chr4	15981885	rs3841512	G	GA	1725.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=17;ExcessHet=3.0103;FS=5.563;MQ=60.00;MQRankSum=0.00;QD=31.95;ReadPosRankSum=0.669;SOR=1.996;VQSLOD=5.06;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:54:1|1:15981874_A_C:758,54,0:15981874
chr4	15981926	.	T	TA	1213.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DP=35;ExcessHet=3.0103;FS=2.185;MQ=59.84;MQRankSum=0.00;QD=12.90;ReadPosRankSum=0.176;SOR=1.053;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,18:35:99:259,0,216
chr4	15986042	rs7675574	G	A	6757.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=33.79;SOR=2.141;VQSLOD=5.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2131,188,0
chr4	15986113	rs7659341	T	C	2957.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.80;SOR=3.690;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:863,78,0
chr4	15986186	rs7675791	G	T	1091.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=4.407;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:506,42,0
chr4	15987509	.	T	TTTAAG	2348.58	PASS	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.46;QD=29.60;SOR=1.051;VQSLOD=4.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:19:306,19,0
chr4	15987512	.	T	TGCTTATTTAATCTGTATTAAATATTTAATACAGATAA	4263.73	PASS	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.30;QD=27.18;SOR=1.179;VQSLOD=4.33;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,7:7:55:880,55,0
chr4	15987807	rs7688123	G	C	2455.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=3.327;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:781,57,0
chr4	15989191	rs2191004	C	T	3495.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.74;SOR=3.275;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:35:99:1332,119,0
chr4	15989500	rs34264338	C	CT	559.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=59.29;MQRankSum=0.00;QD=14.73;ReadPosRankSum=0.327;SOR=2.833;VQSLOD=4.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:15:33:181,0,33
chr4	15991275	rs2240685	G	A	4804.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=53;ExcessHet=3.0103;FS=0.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=-7.490e-01;SOR=0.556;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1723,159,0
chr4	15991599	rs2240684	T	C	1587.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=1.04;SOR=1.565;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,9:10:10:293,0,10
chr4	15994019	rs55708318	G	A	998.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=2.235;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:97:1015,97,0
chr4	16002050	rs6449212	T	C	3206.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=3.636;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:897,78,0
chr4	16020162	rs2286455	C	T	1575.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=26;ExcessHet=1.5490;FS=2.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=-2.700e-02;SOR=0.403;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,9:26:99:292,0,526
chr4	16024730	rs34252465	G	GC	653.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=6.091;VQSLOD=6.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:196,18,0
chr4	16024885	rs2013854	A	G	3168.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.110e-01;DB;DP=49;ExcessHet=0.4576;FS=4.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.77;ReadPosRankSum=1.70;SOR=1.184;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1521,147,0
chr4	16025837	rs17478336	C	T	1102.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.33;DB;DP=70;ExcessHet=3.0103;FS=0.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-6.130e-01;SOR=0.963;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1111,0,732
chr4	16025853	rs16892822	A	G	2796.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.628e+00;DB;DP=85;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.727;SOR=0.640;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,37:85:99:805,0,1361
chr4	16034720	rs3839175	C	CT	84.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=-5.240e-01;SOR=1.179;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:56:92,0,56
chr4	16037352	rs2078622	C	T	1309.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.687;SOR=0.732;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,52:98:99:1318,0,1151
chr4	16164489	rs7359	G	A	535.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=17;ExcessHet=3.9794;FS=3.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=0.654;SOR=0.255;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:126,0,302
chr4	16168581	rs10939651	T	C	1074.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=6.9897;FS=6.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=-8.620e-01;SOR=1.666;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:193,0,102
chr4	16168664	rs4395495	C	T	133.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=53.40;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=-5.240e-01;SOR=0.330;VQSLOD=-2.459e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:28:28,0,162
chr4	16172181	rs1662654	C	T	815.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=11;ExcessHet=6.9897;FS=1.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=-4.350e-01;SOR=0.307;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:171,0,174
chr4	16181425	rs35672622	ATGTG	A,ATG	129.81	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.45;SOR=0.368;VQSLOD=3.22;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,2:4:58:148,64,58,70,0,58
chr4	16192053	rs2044195	T	C	34.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:40,0,31
chr4	16192209	rs9996261	C	T	607.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=13;ExcessHet=3.9794;FS=4.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=-3.440e-01;SOR=1.802;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:219,0,244
chr4	16192413	rs7666361	C	T	10016.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=107;ExcessHet=3.0103;FS=0.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.67;ReadPosRankSum=-1.909e+00;SOR=0.610;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3548,321,0
chr4	16198378	rs10939652	A	G	2079.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=55;ExcessHet=6.9897;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.169;SOR=0.806;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:660,0,801
chr4	16198439	rs10939653	T	C	1202.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=45;ExcessHet=3.9794;FS=3.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=0.434;SOR=0.412;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:543,0,580
chr4	16227781	rs3749543	A	G	635.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.622e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.54;ReadPosRankSum=-1.002e+00;SOR=1.453;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:306,27,0
chr4	16227823	rs3749544	G	A	169.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240e-01;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.706;SOR=0.527;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:177,0,216
chr4	16228538	rs13136055	C	T	593.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.41;ReadPosRankSum=0.389;SOR=0.634;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,8:26:99:0|1:16228538_C_T:225,0,449:16228538
chr4	16228641	rs147360928	G	C	475.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=28;ExcessHet=3.0103;FS=6.029;MQ=60.00;MQRankSum=0.00;QD=16.97;ReadPosRankSum=0.330;SOR=0.157;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,17:28:99:484,0,346
chr4	16240306	rs73234668	T	C	365.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.454e+00;DB;DP=20;ExcessHet=3.0103;FS=2.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=-6.750e-01;SOR=0.283;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,13:20:99:0|1:16240297_G_T:374,0,194:16240297
chr4	16504082	rs872479	C	T	557.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.628;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=0.456;SOR=1.609;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:279,21,0
chr4	16510131	rs9993371	C	T	564.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-7.280e-01;SOR=0.727;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,21:50:99:573,0,754
chr4	16597280	rs1506462	T	A	1174.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.25;SOR=4.047;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:251,21,0
chr4	16675898	rs4698505	C	A	7723.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=0.776;VQSLOD=17.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2333,225,0
chr4	16676046	rs7699941	A	C	1106.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e+00;DB;DP=44;ExcessHet=3.9794;FS=6.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-3.070e-01;SOR=0.291;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:409,0,678
chr4	16753863	rs283027	A	C	2701.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.99;SOR=4.774;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:758,57,0
chr4	17488905	rs3822231	T	A	779.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-1.466e+00;SOR=0.657;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,28:49:99:788,0,549
chr4	17489003	rs2597767	T	C	335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=-1.002e+00;SOR=0.878;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:344,0,599
chr4	17492145	rs731437	T	C	351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050e-01;DB;DP=29;ExcessHet=3.0103;FS=4.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.066;SOR=1.721;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:360,0,510
chr4	17492562	rs7660043	A	G	67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:1:75,0,1
chr4	17494054	rs2597772	A	G	6197.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.82;SOR=2.584;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2204,200,0
chr4	17503382	rs2597775	C	T	732.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.747e+00;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-6.610e-01;SOR=0.709;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,33:63:99:741,0,763
chr4	17503544	rs2597776	C	T	981.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.003e+00;DB;DP=66;ExcessHet=3.0103;FS=3.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=-1.508e+00;SOR=0.336;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,41:66:99:990,0,920
chr4	17503546	rs3733571	C	T	491.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DB;DP=65;ExcessHet=3.0103;FS=3.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.56;ReadPosRankSum=1.63;SOR=1.270;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,22:65:99:500,0,1729
chr4	17506042	rs12645938	G	A	528.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=53;ExcessHet=3.0103;FS=2.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.867;SOR=0.376;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:537,0,761
chr4	17513458	rs2244804	A	G	5010.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=101;ExcessHet=6.9897;FS=6.963;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.254;SOR=0.437;VQSLOD=6.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,47:101:99:1309,0,1688
chr4	17513498	rs3217604	GC	G	6945.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DB;DP=155;ExcessHet=6.9897;FS=1.801;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.311;SOR=0.864;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:75,80:155:99:2064,0,1886
chr4	17513724	rs2244788	G	C	4549.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.592e+00;DB;DP=123;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.462;SOR=0.675;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,52:123:99:1217,0,1980
chr4	17516771	rs2597784	C	T	817.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.58;SOR=6.273;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:23:263,23,0
chr4	17517099	rs1551091	A	G	10790.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=33.41;SOR=1.233;VQSLOD=5.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3724,357,0
chr4	17528463	rs2597791	G	A	2112.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=155;ExcessHet=3.0103;FS=2.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-8.320e-01;SOR=0.894;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,84:155:99:2121,0,1644
chr4	17528570	rs2597792	G	C	2947.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-02;DB;DP=207;ExcessHet=3.0103;FS=3.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=0.159;SOR=0.490;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,120:207:99:2956,0,2049
chr4	17579415	rs7658447	T	C	926.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.33;ReadPosRankSum=0.00;SOR=1.839;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:388,27,0
chr4	17581617	rs10939736	T	A	2255.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.296;DB;DP=35;ExcessHet=3.9794;FS=0.731;MQ=59.96;MQRankSum=0.00;QD=17.35;ReadPosRankSum=1.52;SOR=0.784;VQSLOD=4.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1095,104,0
chr4	17581643	rs35153429	CAG	C	1718.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.794;DB;DP=18;ExcessHet=3.9794;FS=1.354;MQ=59.94;MQRankSum=0.00;QD=24.56;ReadPosRankSum=1.19;SOR=0.508;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:810,54,0
chr4	17583200	rs5856433	TAA	T	1827.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.17;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=0.479;SOR=0.584;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:879,75,0
chr4	17583806	rs2010053	A	C	369.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=4;ExcessHet=3.9794;FS=3.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=1.32;SOR=0.129;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr4	17585014	rs1476836	G	C	3397.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e-01;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=0.259;SOR=0.730;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1608,147,0
chr4	17586703	rs3733576	T	C	4077.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.467e+00;DB;DP=60;ExcessHet=3.0103;FS=0.872;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.81;ReadPosRankSum=-4.130e-01;SOR=0.860;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1918,180,0
chr4	17586957	rs7670500	A	G	483.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.230e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.23;ReadPosRankSum=1.28;SOR=3.126;VQSLOD=18.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:375,27,0
chr4	17590671	rs17499929	G	A	3026.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.156;DB;DP=89;ExcessHet=6.9897;FS=5.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-3.570e-01;SOR=0.426;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,55:89:99:1313,0,688
chr4	17590686	rs35467396	AT	A	2519.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=59;ExcessHet=3.0103;FS=2.472;MQ=60.00;MQRankSum=0.00;QD=20.66;ReadPosRankSum=0.854;SOR=1.274;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,55:59:99:1459,176,0
chr4	17590734	rs11737120	A	T	1829.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.179e+00;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=0.828;SOR=1.230;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1315,102,0
chr4	17598384	rs28441502	G	A	326.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	17599894	rs3775927	G	T	609.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.510e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=1.12;SOR=0.512;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:385,30,0
chr4	17600384	rs58100960	C	CT	388.22	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.090;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.84;ReadPosRankSum=1.24;SOR=3.383;VQSLOD=3.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:257,27,0
chr4	17605950	rs10719442	GT	G	661.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.09;ReadPosRankSum=0.020;SOR=1.931;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:17605950_GT_G:315,21,0:17605950
chr4	17605959	rs4698627	T	C	762.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.31;ReadPosRankSum=0.431;SOR=1.460;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:17605950_GT_G:315,21,0:17605950
chr4	17606659	rs3815414	G	A	153.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=1.981;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:167,15,0
chr4	17608620	rs4698628	A	G	4462.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.585;DB;DP=75;ExcessHet=3.9794;FS=1.504;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-9.070e-01;SOR=0.824;VQSLOD=6.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2241,225,0
chr4	17608884	rs4698629	C	G	1030.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.19;DB;DP=10;ExcessHet=3.9794;FS=11.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=1.12;SOR=2.732;VQSLOD=14.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:427,30,0
chr4	17616214	rs2286773	C	A	3248.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.004e+00;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=1.70;SOR=1.592;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1614,120,0
chr4	17621383	rs7673500	C	T	819.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.174e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-6.910e-01;SOR=1.244;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr4	17625209	rs11733730	G	C	1509.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.238e+00;DB;DP=17;ExcessHet=3.9794;FS=2.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=0.644;SOR=0.326;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:654,51,0
chr4	17627294	rs2315552	A	G	2936.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-02;DB;DP=59;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-1.990e-01;SOR=0.717;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,25:59:99:590,0,859
chr4	17627332	rs2315553	T	C	4808.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=67;ExcessHet=3.9794;FS=1.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=0.110;SOR=0.709;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1995,201,0
chr4	17634213	rs6825562	A	G	5930.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=0.768;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1570,152,0
chr4	17634255	rs6847966	G	A	3787.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.320e-01;DB;DP=44;ExcessHet=3.9794;FS=1.244;MQ=60.00;MQRankSum=0.00;QD=22.55;ReadPosRankSum=-1.040e-01;SOR=0.813;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:17634255_G_A:1910,135,0:17634255
chr4	17634256	rs142873186	C	CAA	3787.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=43;ExcessHet=3.9794;FS=1.998;MQ=60.00;MQRankSum=0.00;QD=22.82;ReadPosRankSum=-1.040e-01;SOR=0.874;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,43:43:99:1|1:17634255_G_A:1910,135,0:17634255
chr4	17634442	rs6848360	G	T	321.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:155,15,0
chr4	17635556	rs140729140	CAAAAT	C	4071.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.560e-01;DB;DP=44;ExcessHet=3.9794;FS=2.636;MQ=60.00;MQRankSum=0.00;QD=22.62;ReadPosRankSum=0.292;SOR=0.895;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1974,133,0
chr4	17636507	rs3214318	G	GT	777.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.885;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.41;ReadPosRankSum=0.448;SOR=1.157;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:505,54,0
chr4	17638020	rs7659718	A	C	656.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=11;ExcessHet=3.9794;FS=2.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=1.09;SOR=0.223;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:426,33,0
chr4	17640654	rs4698640	G	A	1173.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.10;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=0.603;SOR=0.960;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:532,39,0
chr4	17640858	rs6811887	C	T	11968.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=223;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.70;ReadPosRankSum=1.37;SOR=0.728;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,223:223:99:6865,669,0
chr4	17641188	rs2302394	A	G	1816.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.660e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=1.06;SOR=0.765;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:854,72,0
chr4	17643620	rs28501187	G	A	763.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=15;ExcessHet=6.9897;FS=4.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=-3.470e-01;SOR=2.760;VQSLOD=19.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,14:15:1:462,0,1
chr4	17643848	rs2286771	G	A	3720.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.420e-01;DB;DP=82;ExcessHet=3.9794;FS=1.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=0.423;SOR=0.565;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2365,244,0
chr4	17649233	rs3733577	T	G	1835.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=25;ExcessHet=3.9794;FS=8.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=0.906;SOR=0.172;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:863,75,0
chr4	17649494	rs6813374	T	C	3707.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.009e+00;DB;DP=47;ExcessHet=3.9794;FS=5.144;MQ=60.00;MQRankSum=0.00;QD=24.89;ReadPosRankSum=0.258;SOR=0.384;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:47:99:1813,141,0
chr4	17649499	rs6813375	T	G	3664.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.840e-01;DB;DP=43;ExcessHet=3.9794;FS=5.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=9.000e-03;SOR=0.394;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1799,135,0
chr4	17654341	rs2302393	G	A	271.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=3;ExcessHet=3.9794;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=0.703;SOR=0.148;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr4	17654648	rs3815413	T	C	6353.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.400e-01;DB;DP=108;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.26;ReadPosRankSum=0.863;SOR=0.696;VQSLOD=6.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3311,324,0
chr4	17659936	rs10939742	G	T	3074.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.090e-01;DB;DP=48;ExcessHet=3.9794;FS=0.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=1.41;SOR=0.848;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1450,144,0
chr4	17660082	rs1860596	C	T	4173.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=66;ExcessHet=3.9794;FS=7.263;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=0.803;SOR=1.107;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2081,197,0
chr4	17660237	rs2302391	T	C	1643.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.310e-01;DB;DP=27;ExcessHet=3.9794;FS=0.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=-6.490e-01;SOR=0.542;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:824,81,0
chr4	17661398	rs7671752	C	T	201.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=1.15;SOR=0.330;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr4	17689901	rs11306510	AT	A	1043.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=27.47;SOR=2.303;VQSLOD=5.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:306,33,0
chr4	17689974	rs4698646	T	C	2454.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=1.329;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:663,63,0
chr4	17690072	rs61741063	T	C	432.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.953;SOR=0.519;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:441,0,381
chr4	17694880	rs6449324	G	C	3095.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DB;DP=51;ExcessHet=3.9794;FS=4.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=1.08;SOR=1.119;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1738,152,0
chr4	17694916	rs3822235	A	G	4410.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.255;DB;DP=89;ExcessHet=3.9794;FS=4.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.53;ReadPosRankSum=1.21;SOR=0.964;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2714,267,0
chr4	17694943	rs3733579	A	G	6095.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.39;DB;DP=111;ExcessHet=3.9794;FS=0.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=0.984;SOR=0.735;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3510,333,0
chr4	17707032	rs79785054	G	A	1917.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=6.399;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:541,42,0
chr4	17707361	rs57570581	G	A	1756.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.970e+00;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=0.391;SOR=0.616;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1119,106,0
chr4	17707627	rs62295656	C	A	1686.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.892e+00;DB;DP=24;ExcessHet=1.5490;FS=5.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.65;ReadPosRankSum=1.48;SOR=2.422;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:888,72,0
chr4	17707668	rs2215268	T	C	1679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.298e+00;DB;DP=11;ExcessHet=3.0103;FS=12.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=-1.027e+00;SOR=4.671;VQSLOD=12.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:412,33,0
chr4	17710337	rs10669490	C	CTGTGTG	306.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=8;ExcessHet=4.7712;FS=8.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=0.180;SOR=3.442;VQSLOD=4.01;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,6:8:99:221,0,122
chr4	17711076	rs3733583	T	C	9109.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=121;ExcessHet=3.0103;FS=0.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=-6.720e-01;SOR=0.767;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3697,363,0
chr4	17711426	rs6449332	A	G	1110.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.74;ReadPosRankSum=-9.890e-01;SOR=0.507;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:384,33,0
chr4	17711554	rs7664736	A	G	358.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.56;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr4	17782705	rs35662238	G	A	860.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=27;ExcessHet=3.9794;FS=1.842;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.32;SOR=0.320;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:253,0,563
chr4	17812615	rs2074974	A	C	4026.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=60;ExcessHet=3.0103;FS=0.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=1.63;SOR=0.607;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1849,180,0
chr4	17814715	rs140348838	T	C	1100.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030e+00;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.67;ReadPosRankSum=0.489;SOR=0.602;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1109,0,1071
chr4	17817171	rs41268411	A	G	338.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=26;ExcessHet=3.0103;FS=4.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.21;SOR=1.765;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:347,0,369
chr4	17818885	rs2302212	T	C	2793.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DB;DP=76;ExcessHet=6.9897;FS=0.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.770;SOR=0.773;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:806,0,1046
chr4	17819135	rs2302211	T	A	129.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:138,0,104
chr4	17826410	rs140111531	ATTGTT	A	66.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,190
chr4	17826860	rs2286538	C	G	159.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=-2.000e-01;SOR=0.160;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:168,0,181
chr4	17829990	rs3795243	G	C	1436.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.059;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-1.085e+00;SOR=0.683;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,57:102:99:1445,0,1074
chr4	17838536	rs2302210	G	A	171.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.50;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:66:179,0,66
chr4	17841620	rs2286536	A	G	69.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=0.349;SOR=1.080;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:78:78,0,269
chr4	17841848	rs2286535	A	C	923.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=32;ExcessHet=3.9794;FS=3.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=-9.540e-01;SOR=1.112;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:347,0,425
chr4	17841948	rs2286534	T	A	892.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.355e+00;DB;DP=8;ExcessHet=3.0103;FS=2.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=-1.419e+00;SOR=2.019;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:326,24,0
chr4	17842424	rs72292039	AT	A	293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=9;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-1.500e-01;SOR=2.448;VQSLOD=6.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:64:155,0,64
chr4	17843704	rs138213048	T	A	62.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:71,0,31
chr4	17844029	rs17585261	G	A	4198.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=98;ExcessHet=6.9897;FS=2.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=-2.650e-01;SOR=0.820;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,37:98:99:935,0,1709
chr4	17845238	rs7688403	G	C	504.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=-4.310e-01;SOR=1.230;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:99:0|1:17845238_G_C:246,0,121:17845238
chr4	17845241	rs77416591	C	T	237.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=0.854;SOR=1.863;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:99:0|1:17845238_G_C:246,0,121:17845238
chr4	17847181	rs3214284	TA	T	1084.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=5.784;VQSLOD=6.57;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:305,30,0
chr4	17847281	rs16895878	A	C	683.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-01;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.447;SOR=0.646;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,28:57:99:692,0,723
chr4	17885296	.	A	AAC	2307.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.010e-01;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.97;ReadPosRankSum=-2.900e-01;SOR=2.211;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,17:18:18:565,18,0
chr4	17885422	rs376910780	A	G	1121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e-02;DB;DP=65;ExcessHet=3.0103;FS=0.976;MQ=60.00;MQRankSum=0.00;QD=17.25;ReadPosRankSum=0.553;SOR=0.526;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,40:65:99:1130,0,680
chr4	20255260	rs114148723	G	T	95.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.253;SOR=1.022;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:104,0,70
chr4	20255306	rs7655084	G	T	1543.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.93;SOR=5.031;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:507,39,0
chr4	20256722	rs1323066	G	A	19234.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=1.709;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,202:202:99:5989,603,0
chr4	20259621	rs139749288	A	AT	3554.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.005e+00;DB;DP=42;ExcessHet=3.9794;FS=4.043;MQ=60.00;MQRankSum=0.00;QD=30.38;ReadPosRankSum=-1.190e-01;SOR=0.287;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:20259621_A_AT:1867,126,0:20259621
chr4	20259622	rs61790829	A	T	3555.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=41;ExcessHet=3.9794;FS=5.641;MQ=60.00;MQRankSum=0.00;QD=30.92;ReadPosRankSum=0.025;SOR=0.273;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,41:41:99:1|1:20259621_A_AT:1868,126,0:20259621
chr4	20482461	rs16869654	C	G	1015.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.800e-01;DB;DP=125;ExcessHet=3.0103;FS=1.500;MQ=59.99;MQRankSum=0.793;POSITIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=-6.830e-01;SOR=0.537;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,47:125:99:1024,0,2001
chr4	20482656	rs11932685	A	T	92.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:101,0,30
chr4	20487687	rs7667691	G	A	67.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:76:76,0,115
chr4	20487975	rs76469534	C	G	861.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.036e+00;DB;DP=76;ExcessHet=3.0103;FS=4.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-1.944e+00;SOR=0.312;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:870,0,1075
chr4	20490710	rs543593	T	G	870.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=13;ExcessHet=3.9794;FS=1.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=1.12;SOR=1.100;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:252,0,175
chr4	20520993	rs519813	T	C	4232.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.623e+00;DB;DP=58;ExcessHet=3.0103;FS=2.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=-4.700e-02;SOR=0.403;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,30:58:99:669,0,765
chr4	20526985	rs146437952	C	CAT	1684.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=5.186;VQSLOD=6.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:498,36,0
chr4	20529670	rs3775815	G	T	250.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.28;ReadPosRankSum=0.157;SOR=2.833;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:21:259,0,21
chr4	20533700	rs3215198	A	ATT	2268.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112e+00;DB;DP=52;ExcessHet=6.9897;FS=0.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-7.970e-01;SOR=0.626;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,28:52:99:934,0,731
chr4	20535460	rs74466092	T	TTC	1121.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180e-01;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=-7.430e-01;SOR=0.873;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,12:18:99:456,0,202
chr4	20535557	.	T	TACAC	568.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.45;ReadPosRankSum=-5.240e-01;SOR=1.863;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr4	20543475	rs35482672	T	TA	1379.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.36;ReadPosRankSum=-1.442e+00;SOR=1.814;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,7:13:99:0|1:20543475_T_TA:269,0,894:20543475
chr4	20543477	rs35247706	G	A	1379.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.67;ReadPosRankSum=-1.159e+00;SOR=1.714;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:20543475_T_TA:269,0,894:20543475
chr4	20543478	rs201734249	T	TA	1309.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.11;ReadPosRankSum=-1.154e+00;SOR=1.714;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,6:12:99:0|1:20543475_T_TA:234,0,897:20543475
chr4	20543479	rs61790663	G	A	1309.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.19;ReadPosRankSum=-1.154e+00;SOR=1.556;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:20543475_T_TA:234,0,897:20543475
chr4	20544184	rs7690492	C	T	3471.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.870e-01;DB;DP=153;ExcessHet=3.9794;FS=0.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-7.910e-01;SOR=0.721;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,77:153:99:1879,0,1881
chr4	20547838	rs2292439	C	T	1879.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.370e-01;DB;DP=16;ExcessHet=3.0103;FS=5.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=-3.800e-01;SOR=1.875;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:528,48,0
chr4	20568723	rs115502401	A	C	59.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,107
chr4	20599674	rs75396017	T	C	52.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=-1.501e+00;SOR=0.307;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,144
chr4	20620683	rs1379659	G	A	5972.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=88;ExcessHet=3.9794;FS=0.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=1.98;SOR=0.757;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2575,263,0
chr4	20703376	rs2874831	C	T	256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=23;ExcessHet=3.0103;FS=4.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.14;ReadPosRankSum=-1.419e+00;SOR=2.115;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:265,0,418
chr4	20704056	rs964019	T	C	837.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=12;ExcessHet=6.9897;FS=1.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.83;ReadPosRankSum=-5.890e-01;SOR=0.333;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:184,0,224
chr4	20704083	rs964020	G	A	133.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.906;SOR=1.911;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:142,0,181
chr4	20709238	rs35495469	G	GA	2098.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DB;DP=63;ExcessHet=6.9897;FS=2.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.082;SOR=0.942;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,30:63:99:744,0,865
chr4	20709411	rs57364495	C	T	1005.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=91;ExcessHet=3.0103;FS=5.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-2.362e+00;SOR=1.236;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,41:91:99:1014,0,1284
chr4	20714653	rs3764965	G	T	549.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.449;SOR=1.101;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:220,0,165
chr4	20717561	rs11722085	A	G	146.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=-2.189e+00;SOR=0.941;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:155,0,99
chr4	20717956	rs34030649	G	GT	212.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.61;ReadPosRankSum=0.719;SOR=1.765;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:221,0,223
chr4	20726537	rs10654905	C	CT	1266.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-01;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-6.040e-01;SOR=0.614;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,12:22:99:277,0,202
chr4	20728966	rs17552929	G	C	702.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DB;DP=78;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=0.735;SOR=0.526;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,31:78:99:711,0,1109
chr4	20732021	rs1426882	A	C	132.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=0.405;SOR=1.981;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:141,0,138
chr4	20733708	rs111474115	C	CA	2946.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=55;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=-1.243e+00;SOR=0.713;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,32:55:99:844,0,567
chr4	20734176	rs6811933	C	G	1451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=22;ExcessHet=6.9897;FS=6.753;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=0.858;SOR=1.845;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:327,0,364
chr4	20760683	rs17623902	A	G	1980.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.145e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.47;ReadPosRankSum=1.57;SOR=0.735;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:379,0,243
chr4	20884482	rs57696441	G	GAA	1543.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.46;SOR=4.664;VQSLOD=6.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:51:647,51,0
chr4	20884592	rs1388319	C	T	410.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=4.977;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr4	21466532	rs62295501	C	T	541.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=10;ExcessHet=3.9794;FS=2.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=0.100;SOR=0.250;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:145,0,150
chr4	21466544	rs358566	T	A	1816.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.15;ReadPosRankSum=0.189;SOR=2.226;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,103
chr4	21698939	.	TAAA	T,TAA	466.34	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.23;DP=16;ExcessHet=3.0103;FS=1.063;MQ=59.82;MQRankSum=-2.980e-01;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=0.994;SOR=0.965;VQSLOD=1.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,7,6:16:64:193,64,359,67,0,88
chr4	21764577	rs35733545	T	A	530.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.270e-01;DB;DP=51;ExcessHet=3.0103;FS=3.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-6.560e-01;SOR=0.292;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:539,0,897
chr4	21764761	rs717531	C	T	3816.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-01;DB;DP=88;ExcessHet=6.9897;FS=5.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.723;SOR=0.441;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,39:88:99:968,0,1339
chr4	21950259	rs6448102	A	G	16186.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=0.841;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,192:192:99:5515,575,0
chr4	22390167	rs9002	C	T	680.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=-5.710e-01;SOR=0.614;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,29:68:99:689,0,1025
chr4	22402905	rs2045816	C	T	61.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:70,0,67
chr4	22404443	rs3733312	C	T	999.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=94;ExcessHet=3.0103;FS=0.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-7.520e-01;SOR=0.581;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,39:94:99:1008,0,1349
chr4	22404455	rs3733311	T	C	990.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-1.518e+00;SOR=0.643;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,37:86:99:999,0,1199
chr4	22414698	.	T	TA	46.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.26;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:34:55,0,34
chr4	22416076	rs9992521	C	T	157.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-8.640e-01;SOR=0.446;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:166,0,197
chr4	22416133	rs7658234	C	G	2384.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.423e+00;DB;DP=26;ExcessHet=3.9794;FS=3.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=1.29;SOR=1.302;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:281,0,432
chr4	22416195	rs13106386	C	G	4475.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=66;ExcessHet=3.9794;FS=4.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=0.141;SOR=0.473;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,35:66:99:1048,0,796
chr4	22422883	rs2323520	A	C	1186.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.23;ReadPosRankSum=-6.770e-01;SOR=2.554;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:239,0,283
chr4	22425877	rs61744997	A	G	769.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=57;ExcessHet=3.0103;FS=2.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.319;SOR=0.807;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:778,0,618
chr4	22426169	rs2169606	G	A	289.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.42;SOR=1.863;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr4	22437930	rs10516411	T	C	305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=33;ExcessHet=3.0103;FS=1.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.25;ReadPosRankSum=0.346;SOR=0.368;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:314,0,526
chr4	22439914	rs6823735	A	C	1850.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.31;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.92;ReadPosRankSum=-1.012e+00;SOR=0.625;VQSLOD=0.207;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,12:15:48:355,0,48
chr4	22440234	rs28437151	G	C	140.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.04;ReadPosRankSum=2.19;SOR=0.941;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:149,0,103
chr4	22444251	rs374500461	CA	C	198.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.114e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.06;ReadPosRankSum=-1.325e+00;SOR=0.611;VQSLOD=4.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,7:33:75:75,0,541
chr4	22444692	rs10018144	C	T	4775.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=0.786;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1379,141,0
chr4	22456381	rs10003859	T	A	290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.240e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=1.74;SOR=0.527;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:299,0,385
chr4	22456431	rs10003883	T	A	506.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=-1.813e+00;SOR=0.903;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:515,0,442
chr4	22457478	rs16872669	C	T	7051.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.350e-01;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=-6.400e-02;SOR=0.717;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,38:79:99:912,0,1014
chr4	22457692	rs2126633	T	C	59.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:67,0,30
chr4	22715639	rs1963996	A	G	2519.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.52;SOR=2.147;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:956,84,0
chr4	22715657	rs34299764	C	G	1584.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.991;DB;DP=36;ExcessHet=6.9897;FS=3.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=-1.070e-01;SOR=0.407;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:489,0,439
chr4	22820504	rs358231	A	T	2860.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.185e+00;DB;DP=58;ExcessHet=3.9794;FS=3.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-5.700e-02;SOR=0.418;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1815,173,0
chr4	22820672	rs33911624	T	TA	577.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=1.15;SOR=1.981;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:22820672_T_TA:270,18,0:22820672
chr4	22820676	rs5015834	T	G	577.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.41;ReadPosRankSum=1.15;SOR=1.981;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:22820672_T_TA:270,18,0:22820672
chr4	23815522	rs3755863	C	T	5430.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=128;ExcessHet=1.5490;FS=3.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=0.170;SOR=0.980;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,59:128:99:1575,0,1716
chr4	23815662	rs8192678	C	T	7743.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=192;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.33;ReadPosRankSum=0.498;SOR=0.701;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,79:192:99:2048,0,2795
chr4	23815924	rs2970847	T	C	6964.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=67;ExcessHet=3.0103;FS=3.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.43;ReadPosRankSum=0.101;SOR=1.013;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1086,0,668
chr4	23816242	.	TA	T	854.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.029;DP=25;ExcessHet=3.9794;FS=1.761;MQ=59.60;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-3.090e-01;SOR=1.524;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,13:25:99:274,0,123
chr4	23829862	rs3774907	G	A	638.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=0.652;SOR=1.708;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:111,0,111
chr4	24260048	rs2324472	T	C	348.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=9;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=-1.036e+00;SOR=1.609;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:22:240,0,22
chr4	24531573	rs55831351	C	T	58.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:67,0,35
chr4	24538573	rs4697063	A	G	1643.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=-1.304e+00;SOR=1.136;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:337,0,341
chr4	24550431	rs35768649	T	A	762.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=41;ExcessHet=3.0103;FS=2.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=0.473;SOR=0.293;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:771,0,558
chr4	24572620	rs73246475	C	G	70.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=2.303;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	24577693	rs55884791	A	G	95.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.241;SOR=0.283;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:104,0,209
chr4	24801315	rs2536512	G	A	25368.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=398;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=1.16;SOR=0.709;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:203,195:398:99:4859,0,4884
chr4	24801949	rs2695232	C	T	854.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=4.712;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr4	24801976	rs2855262	T	C	320.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.74;SOR=4.407;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	24809884	rs1019229	T	C	9194.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.31;SOR=1.381;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2959,285,0
chr4	24821760	rs144507372	TG	T	1116.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=1.863;VQSLOD=5.42;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1133,84,0
chr4	24824476	rs73248497	G	A	67.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.82;SOR=2.303;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	24836619	rs16876194	C	T	1439.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=1.280;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1456,135,0
chr4	24878490	rs10002411	C	T	646.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=5.670;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr4	24914382	rs113803310	C	T	464.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=48;ExcessHet=3.0103;FS=2.835;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=1.40;SOR=1.244;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,18:48:99:473,0,758
chr4	25005356	rs2232027	T	C	774.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.735e+00;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-1.120e-01;SOR=0.756;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,31:57:99:783,0,765
chr4	25021042	rs60479823	CT	C	394.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-1.282e+00;SOR=4.174;VQSLOD=3.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr4	25026195	rs2080213	G	A	279.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.00;SOR=0.976;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:70,0,35
chr4	25028472	rs34396934	A	G	507.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-8.570e-01;SOR=0.610;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:516,0,479
chr4	25028786	rs6448325	C	G	71.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=-3.190e-01;SOR=0.446;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:77,0,31
chr4	25125703	rs2302566	C	G	1263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-3.860e-01;SOR=0.732;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1272,0,1190
chr4	25146307	rs2302565	G	A	397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:112,0,72
chr4	25158025	rs10709028	TA	T	804.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.74;SOR=4.479;VQSLOD=5.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:169,18,0
chr4	25161715	rs2291873	G	C	352.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=-4.390e-01;SOR=1.061;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:361,0,251
chr4	25235801	rs10021593	G	A	427.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-3.130e+00;SOR=0.941;VQSLOD=21.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:16,16:32:99:436,0,361
chr4	25236017	rs313549	T	C	316.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=6.9897;FS=2.262;MQ=60.00;MQRankSum=0.00;QD=14.41;ReadPosRankSum=0.652;SOR=1.609;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:47:108,0,47
chr4	25253995	rs313567	C	T	7197.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DB;DP=125;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=2.07;SOR=0.736;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3986,375,0
chr4	25254253	rs11940599	C	T	30.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.64;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:39:39,0,63
chr4	25258482	rs4697557	G	A	151.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.494;SOR=1.179;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:160,0,268
chr4	25270541	rs3106321	G	C	186.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=0.319;SOR=2.303;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	25278988	rs3796780	T	C	276.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=-1.890e-01;SOR=1.609;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr4	25315616	rs73252577	G	A	509.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.95;DB;DP=40;ExcessHet=3.0103;FS=5.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.408;SOR=1.863;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:518,0,564
chr4	25315637	rs199972003	C	CT	1356.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262e+00;DB;DP=47;ExcessHet=3.9794;FS=0.703;MQ=60.00;MQRankSum=0.00;QD=12.33;ReadPosRankSum=-9.670e-01;SOR=0.610;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,21:47:99:490,0,240
chr4	25316691	rs73252579	G	A	105.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=-1.282e+00;SOR=0.693;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:30:114,0,30
chr4	25316815	rs12508686	T	C	603.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=2.29;SOR=0.653;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:225,0,175
chr4	25325797	rs113889759	AT	A	413.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.69;ReadPosRankSum=0.319;SOR=3.816;VQSLOD=4.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:193,24,0
chr4	25325988	rs4499690	T	C	438.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=30;ExcessHet=3.0103;FS=1.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-1.215e+00;SOR=0.977;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:447,0,349
chr4	25363471	rs36038307	A	G	427.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=23;ExcessHet=3.0103;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-3.560e-01;SOR=1.270;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:436,0,157
chr4	25363901	rs315675	T	A	5726.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.580e+00;DB;DP=65;ExcessHet=3.0103;FS=2.903;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=0.670;SOR=0.477;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1939,195,0
chr4	25370962	rs315689	A	T	1020.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.94;ReadPosRankSum=0.00;SOR=0.586;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:396,33,0
chr4	25382216	rs315676	C	G	571.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.76;ReadPosRankSum=-1.036e+00;SOR=2.833;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr4	25384740	rs2292405	T	C	64.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=2.303;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr4	25391584	rs186408	G	A	1153.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.932e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=0.572;SOR=1.314;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
chr4	25392753	rs73254164	C	T	90.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.414;SOR=0.368;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:99,0,164
chr4	25395673	rs73254166	C	T	261.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.006e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-9.400e-02;SOR=0.582;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:270,0,290
chr4	25396413	rs60735339	C	T	750.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=71;ExcessHet=3.0103;FS=3.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=0.884;SOR=1.161;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,26:71:99:759,0,1131
chr4	25404553	rs10023139	C	T	1499.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.460e-01;DB;DP=79;ExcessHet=3.9794;FS=3.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.28;ReadPosRankSum=1.13;SOR=0.653;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,39:79:99:825,0,929
chr4	25411655	rs73254174	A	C	69.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:78,0,31
chr4	25415552	rs142610646	C	CGTGT	121.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.98;SOR=2.833;VQSLOD=4.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr4	25415880	rs3816585	C	G	100.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=-1.960e+00;SOR=0.132;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,102
chr4	25417109	rs3214035	T	A	1467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=108;ExcessHet=3.0103;FS=0.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.103e+00;SOR=0.857;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,54:108:99:1476,0,1424
chr4	25417244	rs3816587	C	T	853.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.77;ReadPosRankSum=1.31;SOR=0.866;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:313,0,321
chr4	25419283	rs9174	T	C	2547.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406e+00;DB;DP=99;ExcessHet=3.9794;FS=0.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.366;SOR=0.714;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1111,0,1380
chr4	25666099	rs13110175	A	G	441.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=0.842;SOR=2.179;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:125,0,65
chr4	25674458	rs10084927	C	T	144.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=-3.660e-01;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:60:153,0,60
chr4	25674905	.	TCACA	T	2082.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.71;ReadPosRankSum=-3.170e-01;SOR=1.302;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,7:18:99:0|1:25674905_TCACA_T:252,0,1682:25674905
chr4	25674911	.	G	GAGGGA	2217.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.11;SOR=1.410;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,6:16:99:0|1:25674905_TCACA_T:252,0,1682:25674905
chr4	25674913	rs62409436	A	G	2187.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.98;ReadPosRankSum=-5.160e-01;SOR=0.818;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,6:15:99:0|1:25674905_TCACA_T:222,0,1619:25674905
chr4	25678199	rs6448389	A	G	14766.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.786;DB;DP=188;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=0.589;SOR=0.740;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,99:188:99:2542,0,2239
chr4	25678531	rs5856917	T	TG	2556.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.896;DB;DP=26;ExcessHet=3.0103;FS=1.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.79;ReadPosRankSum=0.431;SOR=1.094;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,9:26:99:241,0,529
chr4	25758580	rs4401441	G	A	3442.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=3.334;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1186,96,0
chr4	25758655	rs71610873	T	C	80.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-9.920e-01;SOR=1.270;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:89:89,0,181
chr4	25759078	.	CCA	C	101.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DP=14;ExcessHet=4.7712;FS=0.000;MQ=59.68;MQRankSum=1.15;QD=4.61;ReadPosRankSum=0.313;SOR=1.051;VQSLOD=0.196;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:84:84,0,218
chr4	25759109	rs11352729	CT	C	946.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940e-01;DB;DP=33;ExcessHet=6.9897;FS=2.115;MQ=59.78;MQRankSum=1.09;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=0.692;SOR=1.063;VQSLOD=1.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,17:33:99:352,0,292
chr4	25759691	rs6810782	A	T	130.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.35;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,145
chr4	25760828	rs2276953	T	C	584.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=0.176;SOR=0.588;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:269,0,177
chr4	25760874	rs3216723	CA	C	114.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.73;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:70:0|1:25760874_CA_C:123,0,70:25760874
chr4	25760885	rs2276951	G	A	114.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.74;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:70:0|1:25760874_CA_C:123,0,70:25760874
chr4	25767133	rs6823220	A	T	3533.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.570e-01;DB;DP=69;ExcessHet=6.9897;FS=1.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=0.175;SOR=0.821;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,38:69:99:896,0,772
chr4	25767183	rs4697616	G	A	6552.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.910e-01;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=1.87;SOR=0.717;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:566,0,625
chr4	25769135	rs2290577	T	C	2997.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=50;ExcessHet=3.9794;FS=3.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.367;SOR=0.403;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1498,150,0
chr4	25779160	rs6821377	G	A	459.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=5.136;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr4	25780599	rs13121073	C	T	1323.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=31;ExcessHet=6.9897;FS=2.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-3.040e-01;SOR=1.148;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,12:31:99:330,0,567
chr4	25780891	rs4697619	A	G	1314.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DB;DP=30;ExcessHet=6.9897;FS=5.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-2.200e-02;SOR=1.691;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:475,0,336
chr4	25803830	rs3733543	A	G	5252.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=52;ExcessHet=3.0103;FS=3.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.18;ReadPosRankSum=0.302;SOR=0.431;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:796,0,645
chr4	25915648	rs2305669	G	A	14641.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.851e+00;DB;DP=138;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=0.108;SOR=0.724;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,79:138:99:1966,0,1548
chr4	26097294	rs142549871	GAAGGAAGGAAGGAAGGA	G	799.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.49;ReadPosRankSum=-1.169e+00;SOR=0.437;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,21:39:99:808,0,682
chr4	26097298	rs139788486	GAAGGAAGGAAGGA	G,*	4128.72	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.13;DB;DP=39;ExcessHet=3.0103;FS=3.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=-5.550e-01;SOR=1.537;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,18,21:39:99:1679,874,808,752,0,682
chr4	26122858	rs6825116	G	T	974.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.111e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.98;ReadPosRankSum=1.28;SOR=4.255;VQSLOD=13.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:420,30,0
chr4	26274274	rs7680528	T	A	1668.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.166e+00;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=0.074;SOR=0.615;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,8:31:99:200,0,676
chr4	26322759	rs113697915	C	A	1518.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=23;ExcessHet=6.9897;FS=2.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.07;ReadPosRankSum=-4.920e-01;SOR=0.374;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:283,0,293
chr4	26364300	rs13116873	C	G	1104.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.310;SOR=0.711;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:433,0,421
chr4	26387959	rs56122711	AT	A	2064.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.851;DB;DP=50;ExcessHet=1.5490;FS=5.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=-1.361e+00;SOR=1.040;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,24:50:99:509,0,580
chr4	26407681	rs3109839	A	G	1078.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=23;ExcessHet=1.5490;FS=2.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=0.820;SOR=1.730;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:278,0,438
chr4	26417068	.	G	GT	109.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DP=9;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=12.14;ReadPosRankSum=0.480;SOR=3.126;VQSLOD=3.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:39:118,0,39
chr4	26417136	rs2270226	T	C	1898.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.02;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.14;ReadPosRankSum=0.527;SOR=0.770;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:637,0,293
chr4	26491156	rs6850415	G	A	2396.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.105;DB;DP=105;ExcessHet=3.9794;FS=1.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=1.82;SOR=0.591;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1321,0,1515
chr4	26491311	rs74712870	G	A	1552.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;DB;DP=43;ExcessHet=3.9794;FS=3.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=0.428;SOR=0.352;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,29:43:99:826,0,332
chr4	26491974	rs6448456	G	C	308.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.319;SOR=0.527;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:102,0,267
chr4	26615982	rs260954	C	T	3380.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.14;SOR=1.802;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:986,87,0
chr4	26616004	rs76113874	T	G	757.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.565;DB;DP=44;ExcessHet=3.0103;FS=1.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.21;ReadPosRankSum=0.421;SOR=0.454;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,29:44:99:766,0,330
chr4	26673761	rs9997999	T	A	1902.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=30.69;SOR=1.329;VQSLOD=3.90;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:624,54,0
chr4	26673787	rs7691219	A	G	2517.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=33.13;SOR=0.984;VQSLOD=4.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:881,81,0
chr4	26685128	rs61690082	A	C	533.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.64;ReadPosRankSum=0.157;SOR=2.303;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	26737063	rs33992685	C	CT	5258.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=1.38;SOR=0.603;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,60:62:99:1638,188,0
chr4	26862546	.	CTT	C,CT	6905.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.190e-01;DP=145;ExcessHet=3.0103;FS=1.771;MQ=59.96;MQRankSum=-2.530e-01;QD=22.64;ReadPosRankSum=0.662;SOR=0.527;VQSLOD=0.469;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:7,58,53:145:99:2947,783,856,1491,0,1323
chr4	27000995	rs6822297	A	G	2270.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.370e-01;DB;DP=44;ExcessHet=1.5490;FS=4.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=0.406;SOR=0.407;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1385,132,0
chr4	27004011	rs10028164	G	A	3341.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=2.184;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:668,57,0
chr4	27021304	rs34654053	A	AT	334.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=23.90;SOR=3.912;VQSLOD=3.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:115,15,0
chr4	27022800	rs10031905	A	G	1749.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.64;SOR=5.186;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:473,33,0
chr4	28372592	rs73224013	C	T	283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=-8.860e-01;SOR=1.802;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:78:292,0,78
chr4	28395157	rs59061175	C	CA	288.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.01;SOR=3.611;VQSLOD=3.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:63,9,0
chr4	28821006	rs6844183	A	G	364.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=19;ExcessHet=3.0103;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=-1.595e+00;SOR=1.942;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:373,0,291
chr4	30075417	rs115965007	G	A	95.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.90;ReadPosRankSum=1.15;SOR=0.446;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:28:0|1:30075417_G_A:103,0,28:30075417
chr4	30075439	rs192697463	A	G	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.27;SOR=0.693;VQSLOD=17.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:30075417_G_A:90,6,0:30075417
chr4	30075440	rs200607371	TAC	T	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.95;SOR=0.693;VQSLOD=4.39;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:30075417_G_A:90,6,0:30075417
chr4	30075445	rs189769400	A	G	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.70;SOR=1.609;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:6:1|1:30075417_G_A:90,6,0:30075417
chr4	30075461	rs181310138	A	G	37.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.65;SOR=1.609;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:30075417_G_A:45,3,0:30075417
chr4	30075469	.	G	A	37.18	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.65;SOR=1.609;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:30075417_G_A:45,3,0:30075417
chr4	30132766	rs34540632	ATG	A	1319.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.990e-01;DB;DP=55;ExcessHet=6.9897;FS=2.004;MQ=60.00;MQRankSum=0.00;QD=6.50;ReadPosRankSum=1.18;SOR=0.543;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,12:55:99:1|0:30132757_A_G:192,0,1179:30132757
chr4	30722751	.	A	G	46.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.32;ReadPosRankSum=-2.530e-01;SOR=0.368;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:44:0|1:30722726_G_A:55,0,44:30722726
chr4	30976765	rs35675648	T	TTGTGTG	1249.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.33;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.662;SOR=0.758;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:17:99:118,0,523
chr4	31031755	rs11274879	T	TTGTGTGTGTGCA	2436.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.662;DB;DP=36;ExcessHet=6.9897;FS=7.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-6.830e-01;SOR=1.338;VQSLOD=5.97;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,14:36:99:571,0,2463
chr4	31129768	rs144203433	TAC	T	45.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.213e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.51;ReadPosRankSum=-7.250e-01;SOR=0.560;VQSLOD=5.07;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,4:32:54:54,0,874
chr4	36069805	rs7657166	G	A	1873.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=75;ExcessHet=3.9794;FS=2.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.036;SOR=0.916;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,37:75:99:897,0,1004
chr4	36081878	rs4833069	C	T	5635.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=30.46;SOR=1.172;VQSLOD=4.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1422,141,0
chr4	36082155	rs61797479	G	C	70.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:60:77,0,60
chr4	36109409	rs7688562	C	G	537.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=3.912;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:253,21,0
chr4	36115666	rs3736442	A	C	369.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=1.09;SOR=1.061;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:46:46,0,213
chr4	36116111	rs1510643	C	T	1148.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.64;SOR=5.421;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:431,33,0
chr4	36119072	rs34716116	T	C	80.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:89,0,66
chr4	36121140	rs372628211	G	GT	1634.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=17;ExcessHet=3.9794;FS=2.014;MQ=60.00;MQRankSum=0.00;QD=16.18;ReadPosRankSum=1.99;SOR=1.061;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:174,0,180
chr4	36122737	rs4832795	A	T	1978.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.72;ReadPosRankSum=0.00;SOR=3.729;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:241,0,249
chr4	36123024	rs1397423	A	G	1276.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162e+00;DB;DP=83;ExcessHet=3.0103;FS=3.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.701;SOR=0.362;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1285,0,1007
chr4	36126293	rs2271332	A	G	1223.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.08;ReadPosRankSum=0.454;SOR=2.774;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:422,0,231
chr4	36126393	rs2271331	G	A	4078.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.711e+00;DB;DP=74;ExcessHet=1.5490;FS=7.213;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=-4.020e-01;SOR=1.443;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,30:74:99:778,0,1300
chr4	36126696	rs3817165	G	A	931.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=-3.040e-01;SOR=0.735;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:324,0,397
chr4	36129996	rs1397420	A	C	746.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.80;SOR=5.892;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:247,18,0
chr4	36130099	rs6148397	T	TAC,TACACAC	3734.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.78;MQRankSum=0.00;QD=27.51;ReadPosRankSum=-7.930e-01;SOR=3.285;VQSLOD=4.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,13,12:25:99:1182,535,482,607,0,564
chr4	36130127	rs5009416	T	C	2494.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.266e+00;DB;DP=44;ExcessHet=1.5490;FS=0.000;MQ=59.77;MQRankSum=0.00;QD=28.68;ReadPosRankSum=0.165;SOR=0.958;VQSLOD=4.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,24:44:99:788,0,689
chr4	36130375	rs5857473	TA	T	5501.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.72;SOR=3.367;VQSLOD=6.26;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:36130375_TA_T:1502,120,0:36130375
chr4	36130393	rs1397419	C	T	3487.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DB;DP=33;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.76;ReadPosRankSum=-9.410e-01;SOR=1.528;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,23:33:99:0|1:36130375_TA_T:780,0,259:36130375
chr4	36148837	rs73225587	T	C	2541.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=37;ExcessHet=1.5490;FS=0.000;MQ=59.84;MQRankSum=-6.790e-01;POSITIVE_TRAIN_SITE;QD=28.24;ReadPosRankSum=-1.146e+00;SOR=1.015;VQSLOD=1.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,24:37:99:692,0,315
chr4	36149025	rs1567483	G	A	8261.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=0.962;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2446,229,0
chr4	36149113	rs1567484	C	T	5799.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=0.843;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1636,129,0
chr4	36160340	rs1546495	G	T	5252.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=1.525;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1327,135,0
chr4	36160603	rs17457286	G	A	388.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=13;ExcessHet=3.9794;FS=5.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=1.28;SOR=0.097;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:251,0,213
chr4	36162273	rs11431961	C	CA	2681.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.424e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.53;ReadPosRankSum=-5.340e-01;SOR=0.916;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,25:26:52:682,52,0
chr4	36162833	rs6531417	A	C	543.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.17;SOR=5.421;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr4	36162923	rs2271330	G	A	2390.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.44;SOR=6.027;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:44:557,44,0
chr4	36168706	rs3055951	CAAAA	C	1178.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=15;ExcessHet=1.5490;FS=5.063;MQ=60.00;MQRankSum=0.00;QD=33.68;ReadPosRankSum=-1.614e+00;SOR=2.419;VQSLOD=4.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:315,0,376
chr4	36179343	rs4832797	T	C	1803.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.74;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.02;SOR=7.658;VQSLOD=5.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:656,51,0
chr4	36188890	rs11096800	G	A	69.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=2.303;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr4	36211914	rs4394022	C	A	1396.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.92;SOR=2.948;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:260,21,0
chr4	36214268	rs6818895	T	A	1154.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=6.804;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:247,18,0
chr4	36214293	rs55722415	A	AT	472.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.77;SOR=5.784;VQSLOD=6.78;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:114,12,0
chr4	36258197	rs7686575	T	C	7579.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=0.967;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2056,210,0
chr4	36292018	rs1995319	T	A	14793.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.51;SOR=1.126;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4747,456,0
chr4	36310049	rs12507599	C	T	1406.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.754;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.821;SOR=0.811;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:338,0,219
chr4	36340753	rs9654132	G	A	753.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=99;ExcessHet=3.0103;FS=1.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=1.60;SOR=0.914;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,35:99:99:762,0,1553
chr4	36345377	rs2270880	G	A	1118.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;DB;DP=89;ExcessHet=3.0103;FS=0.802;MQ=59.81;MQRankSum=-1.012e+00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-6.160e-01;SOR=0.590;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1127,0,1115
chr4	37247021	rs892825	C	T	4759.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.178e+00;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=-4.320e-01;SOR=0.675;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1850,156,0
chr4	37247171	rs34994440	CT	C	855.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.287;DB;DP=10;ExcessHet=3.9794;FS=1.486;MQ=60.00;MQRankSum=0.00;QD=18.61;ReadPosRankSum=0.271;SOR=1.075;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:261,30,0
chr4	37445315	rs4634233	C	A	4923.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.888e+00;DB;DP=135;ExcessHet=6.9897;FS=0.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=1.02;SOR=0.772;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,59:135:99:1499,0,1868
chr4	37590570	rs2279994	G	A	1539.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-2.529e+00;SOR=0.695;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,65:134:99:1548,0,1615
chr4	37592128	rs2973275	G	A	1679.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.505e+00;DB;DP=128;ExcessHet=3.0103;FS=0.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-9.120e-01;SOR=0.612;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,61:128:99:1688,0,1953
chr4	37592674	rs937941	T	C	3070.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.33;SOR=2.535;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1434,135,0
chr4	37624421	.	CTT	C	1008.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-02;DP=36;ExcessHet=6.9897;FS=1.745;MQ=59.94;MQRankSum=0.00;QD=12.30;ReadPosRankSum=-1.600e-02;SOR=0.941;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,9:36:99:223,0,534
chr4	37636750	rs2276943	T	G	16360.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=249;ExcessHet=3.9794;FS=1.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=-4.900e-01;SOR=0.599;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,133:249:99:3683,0,3060
chr4	37649292	rs3934005	A	C	537.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=1.28;SOR=3.912;VQSLOD=15.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:159,0,25
chr4	37649333	rs3934004	T	C	204.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.90;SOR=3.611;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr4	37651155	rs2292298	A	G	663.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=-1.355e+00;SOR=1.329;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:244,0,167
chr4	37666995	rs1221653	T	C	6132.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.242;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1655,144,0
chr4	37687553	rs6531573	T	A	1417.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=4.479;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:37687553_T_A:225,15,0:37687553
chr4	37687560	rs6531574	C	G	1501.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=4.804;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:37687553_T_A:225,15,0:37687553
chr4	37828175	rs2059484	T	C	1214.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.580e-01;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.69;ReadPosRankSum=-4.640e-01;SOR=0.738;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,9:16:99:0|1:37828175_T_C:433,0,458:37828175
chr4	37828186	rs2059483	C	T	1362.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=0.433;SOR=0.636;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,12:24:99:0|1:37828175_T_C:458,0,570:37828175
chr4	37831850	rs2911907	C	T	1027.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.297e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=0.124;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:37831850_C_T:457,33,0:37831850
chr4	37831862	rs10020910	G	A	192.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930e+00;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-1.350e-01;SOR=0.105;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:37831850_C_T:201,0,104:37831850
chr4	37831867	rs10010767	A	T	195.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=-1.068e+00;SOR=0.180;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:69:0|1:37831850_C_T:204,0,69:37831850
chr4	37836302	rs3752683	T	C	1835.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=44;ExcessHet=6.9897;FS=2.699;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.67;ReadPosRankSum=0.189;SOR=0.943;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,14:44:99:326,0,759
chr4	37839366	rs62300673	A	G	2922.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=52;ExcessHet=6.9897;FS=3.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=-5.810e-01;SOR=1.087;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:968,0,685
chr4	37841430	rs2261414	C	T	3168.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=78;ExcessHet=6.9897;FS=3.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.227;SOR=0.893;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,34:78:99:873,0,1120
chr4	37841942	rs2714559	T	C	1392.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=20;ExcessHet=6.9897;FS=1.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.360;SOR=1.316;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:512,0,113
chr4	37845833	rs3836691	A	AAT	549.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.18;ReadPosRankSum=0.366;SOR=0.201;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:18:213,0,18
chr4	37846303	rs114391170	G	A	105.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-6.520e-01;SOR=0.495;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:37846303_G_A:114,0,279:37846303
chr4	37846305	rs114748209	T	A	105.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-6.520e-01;SOR=0.495;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:37846303_G_A:114,0,279:37846303
chr4	37846320	rs75361848	G	A	54.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=0.180;SOR=0.223;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,181
chr4	37848455	rs2290742	T	G	623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=0.248;SOR=0.776;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:632,0,603
chr4	37848535	rs28544509	T	G	804.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650e-01;DB;DP=77;ExcessHet=3.0103;FS=0.859;MQ=60.00;MQRankSum=0.00;QD=10.44;ReadPosRankSum=1.51;SOR=0.741;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,42:77:99:813,0,838
chr4	37848949	rs28662352	C	T	546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.890e-01;DB;DP=35;ExcessHet=3.0103;FS=1.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-5.000e-02;SOR=0.963;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:555,0,442
chr4	37849004	rs2290741	C	T	457.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.740e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.419;SOR=0.836;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:466,0,382
chr4	37849109	rs28685722	T	C	138.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=-1.278e+00;SOR=0.646;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:147,0,221
chr4	37850312	rs35704131	TG	T	2508.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524e+00;DB;DP=48;ExcessHet=6.9897;FS=9.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-3.990e-01;SOR=0.221;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	0/1:23,25:48:99:857,0,762
chr4	37851856	rs10001580	A	C	452.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.610e-01;DB;DP=53;ExcessHet=3.0103;FS=1.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.53;ReadPosRankSum=0.391;SOR=1.002;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,21:53:99:461,0,831
chr4	37857038	rs6531588	C	G	1176.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.80;SOR=6.518;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:37857038_C_G:392,27,0:37857038
chr4	37857061	rs6531589	G	A	1258.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.48;SOR=6.804;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:37857038_C_G:315,21,0:37857038
chr4	37857106	rs6531590	G	A	2062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.83;SOR=7.824;VQSLOD=24.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:503,36,0
chr4	37857166	rs6842360	A	G	4751.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=34.43;SOR=1.863;VQSLOD=5.37;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1304,119,0
chr4	37863013	rs28402184	C	T	1767.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=2.69;SOR=0.672;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:893,0,727
chr4	37863045	rs3832307	AT	A	6148.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=88;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=2.26;SOR=0.713;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1332,0,1417
chr4	37873544	rs13106372	A	G	466.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=55.36;POSITIVE_TRAIN_SITE;QD=33.30;SOR=2.303;VQSLOD=4.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:147,12,0
chr4	37873588	rs57088207	CA	C	386.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=58.06;MQRankSum=0.00;QD=24.15;ReadPosRankSum=1.83;SOR=1.863;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:40:102,0,40
chr4	37873692	rs28714373	T	A	1431.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DB;DP=21;ExcessHet=3.9794;FS=4.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.27;ReadPosRankSum=1.47;SOR=0.250;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,15:21:99:386,0,115
chr4	37922307	rs2925957	G	C	2611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=69;ExcessHet=6.9897;FS=5.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.832;SOR=0.914;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,37:69:99:989,0,715
chr4	37922416	rs60244784	A	T	1039.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=38;ExcessHet=3.9794;FS=0.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-4.390e-01;SOR=0.867;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,17:38:99:0|1:37922416_A_T:636,0,1296:37922416
chr4	37922423	rs36075899	A	G	597.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=-4.670e-01;SOR=0.593;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,15:35:99:0|1:37922416_A_T:606,0,1278:37922416
chr4	37953481	rs3796713	C	G	421.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=31;ExcessHet=3.0103;FS=1.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.978e+00;SOR=0.352;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:430,0,478
chr4	37953827	rs4832971	G	T	524.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.431;SOR=1.329;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:368,27,0
chr4	37962133	rs2290740	G	A	738.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.840e-01;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=-9.090e-01;SOR=0.648;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,36:77:99:747,0,955
chr4	37962186	rs6811863	G	C	4845.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=0.823;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2190,198,0
chr4	37974102	.	CA	C	182.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207e+00;DP=22;ExcessHet=6.9897;FS=2.561;MQ=59.64;MQRankSum=0.00;QD=4.04;ReadPosRankSum=0.00;SOR=0.357;VQSLOD=5.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:22:28:28,0,269
chr4	37974301	rs4832974	C	T	3012.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.63;SOR=2.223;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:993,90,0
chr4	38016395	rs10501	T	G	13071.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.27;DB;DP=187;ExcessHet=3.9794;FS=4.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=-3.500e-01;SOR=1.262;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,102:187:99:3463,0,2758
chr4	38020205	rs61659971	T	TTCTC	1026.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.832;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.13;ReadPosRankSum=0.00;SOR=2.694;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:46:291,0,46
chr4	38022087	rs10015663	A	G	3263.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.137;DB;DP=24;ExcessHet=3.0103;FS=1.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.67;ReadPosRankSum=-4.190e-01;SOR=0.455;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:925,72,0
chr4	38029452	rs112435875	G	C	462.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.880e-01;DB;DP=46;ExcessHet=3.0103;FS=2.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-2.006e+00;SOR=0.694;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:471,0,688
chr4	38029729	rs9995745	A	C	150.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.05;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:156,0,27
chr4	38047768	rs7692720	T	C	97.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=2.833;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr4	38051171	rs7682959	G	A	614.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.322e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=0.166;SOR=0.665;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,20:27:99:623,0,225
chr4	38053788	rs58659939	C	CTG	1809	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.842;POSITIVE_TRAIN_SITE;QD=31.74;ReadPosRankSum=1.03;SOR=1.165;VQSLOD=1.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:152,0,289
chr4	38053815	.	T	TGTGTGTGTGTGC	214.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=-9.670e-01;QD=23.81;ReadPosRankSum=-1.122e+00;SOR=1.022;VQSLOD=0.382;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:99:223,0,306
chr4	38053823	.	CGTGT	C	225.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.780e-01;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.79;MQRankSum=0.674;QD=18.77;ReadPosRankSum=1.09;SOR=0.169;VQSLOD=0.083;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:234,0,230
chr4	38053825	rs73810093	T	C,*	752.87	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.224e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=13.94;ReadPosRankSum=-1.543e+00;SOR=1.051;VQSLOD=4.35;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,5,6:11:99:500,252,234,248,0,230
chr4	38054582	rs6823014	A	G	688.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.168e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=-8.160e-01;SOR=2.925;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:262,21,0
chr4	38054737	rs58983546	C	T	532.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=60;ExcessHet=3.0103;FS=1.062;MQ=59.89;MQRankSum=0.795;POSITIVE_TRAIN_SITE;QD=8.87;ReadPosRankSum=0.130;SOR=0.892;VQSLOD=1.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,22:60:99:541,0,1008
chr4	38062233	rs1364953	T	A	3242.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.659e+00;DB;DP=100;ExcessHet=3.9794;FS=5.307;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.80;ReadPosRankSum=0.679;SOR=0.760;VQSLOD=7.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,57:100:99:1485,0,1168
chr4	38062387	rs75564054	T	C	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=36;ExcessHet=3.0103;FS=1.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.70;ReadPosRankSum=0.533;SOR=1.329;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,11:36:99:286,0,688
chr4	38062530	rs17497622	C	T	207.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=0.00;SOR=1.085;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:63:71,0,63
chr4	38097478	rs10517469	G	A	2578.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.883e+00;DB;DP=56;ExcessHet=6.9897;FS=1.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-1.140e-01;SOR=0.560;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,24:56:99:555,0,902
chr4	38120014	rs66591458	C	CT	389.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=1.18;SOR=1.127;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:187,15,0
chr4	38690760	.	GGT	G	1654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.24;ReadPosRankSum=-2.290e+00;SOR=0.597;VQSLOD=5.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,43:86:99:1663,0,1770
chr4	38696263	rs147958283	TTTTG	T	63.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.54;ReadPosRankSum=-8.420e-01;SOR=0.693;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,218
chr4	38774785	rs10776482	A	G	1199.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.460e-01;DB;DP=87;ExcessHet=3.0103;FS=2.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=-3.210e-01;SOR=0.428;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,49:87:99:1208,0,939
chr4	38774889	rs4129009	T	C	1875.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=104;ExcessHet=3.0103;FS=0.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=-5.270e-01;SOR=0.583;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,65:104:99:1884,0,798
chr4	38775040	rs10776483	A	G	1140.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=75;ExcessHet=3.0103;FS=0.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.992;SOR=0.836;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,39:75:99:1149,0,865
chr4	38775639	rs11466658	G	A	917.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=0.762;SOR=0.697;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:926,0,921
chr4	38776107	rs11096955	T	G	7604.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.68;DB;DP=145;ExcessHet=1.5490;FS=0.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=0.099;SOR=0.634;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4940,435,0
chr4	38776180	rs11096956	C	A	1823.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=139;ExcessHet=3.0103;FS=1.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.373;SOR=0.847;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,69:139:99:1832,0,1784
chr4	38776303	rs11466652	T	C	3420.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DB;DP=115;ExcessHet=3.9794;FS=4.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=-4.600e-01;SOR=0.905;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,61:115:99:1638,0,1448
chr4	38776491	rs11096957	T	G	5185.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=92;ExcessHet=1.5490;FS=6.205;MQ=59.98;MQRankSum=-8.500e-01;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.976;SOR=0.695;VQSLOD=1.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3205,276,0
chr4	38777173	rs10856838	A	T	1853.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DB;DP=83;ExcessHet=3.9794;FS=0.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.692;SOR=0.767;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:757,0,1272
chr4	38777236	rs10856839	T	G	1162.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.47;DB;DP=39;ExcessHet=3.9794;FS=2.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.429;SOR=0.992;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:441,0,569
chr4	38797876	rs4624663	T	C	182.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=1.04;SOR=1.179;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,110
chr4	38798648	rs5743618	C	A	8550.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=178;ExcessHet=1.5490;FS=2.643;MQ=55.41;MQRankSum=-8.900e-01;NEGATIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=1.28;SOR=0.921;VQSLOD=-2.379e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,177:178:99:5830,524,0
chr4	38798935	rs5743614	C	T	9468.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=190;ExcessHet=1.5490;FS=1.999;MQ=41.37;MQRankSum=-5.811e+00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=1.21;SOR=0.507;VQSLOD=-3.429e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,190:190:99:6049,570,0
chr4	38799539	rs3923647	T	A	1957.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DB;DP=54;ExcessHet=3.9794;FS=4.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=2.95;SOR=0.545;VQSLOD=22.50;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,27:54:99:684,0,702
chr4	38799710	rs4833095	T	C	3154.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.970e-01;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=-5.310e-01;SOR=0.714;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2105,183,0
chr4	38800339	rs5743610	G	A	1473.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=125;ExcessHet=3.0103;FS=4.277;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-1.083e+00;SOR=0.559;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,56:125:99:1482,0,1721
chr4	38800575	rs5743609	G	A	279.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=1.28;SOR=0.818;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:147,0,66
chr4	38829163	rs5743818	A	C	3272.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.403e+00;DB;DP=105;ExcessHet=3.9794;FS=7.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.107;SOR=0.488;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,61:105:99:1675,0,1182
chr4	38829832	rs3775073	T	C	6895.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.673;DB;DP=121;ExcessHet=3.9794;FS=3.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=-1.540e-01;SOR=0.658;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3699,360,0
chr4	38830012	rs3821985	G	C	4284.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.071;DB;DP=74;ExcessHet=3.9794;FS=9.507;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.105;SOR=0.823;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2428,221,0
chr4	38830350	rs5743810	A	G	8469.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=0.411;SOR=0.697;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3043,297,0
chr4	38879581	rs113901907	G	A	274.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=7;ExcessHet=3.9794;FS=2.969;MQ=58.39;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.712;SOR=1.802;VQSLOD=-1.430e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:63:63,0,224
chr4	38879585	rs34317975	C	CA,CAA	961.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.04;DB;DP=8;ExcessHet=3.0103;FS=3.705;MQ=59.34;MQRankSum=-1.826e+00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=0.762;SOR=2.400;VQSLOD=0.101;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,4,2:8:81:234,104,81,107,0,168
chr4	38879655	rs73236661	C	T	1838.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.150e-01;DB;DP=54;ExcessHet=3.9794;FS=2.919;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.901;SOR=1.040;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,23:54:99:616,0,893
chr4	38879949	rs11096964	G	A	6269.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.880e-01;DB;DP=286;ExcessHet=3.9794;FS=1.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.708;SOR=0.579;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:156,130:286:99:3019,0,3912
chr4	38880046	rs11555334	T	C	3338.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.399e+00;DB;DP=128;ExcessHet=3.9794;FS=1.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=2.44;SOR=0.793;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,58:128:99:1513,0,1976
chr4	38880136	rs11943209	A	T	784.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=33;ExcessHet=3.9794;FS=1.698;MQ=60.00;MQRankSum=0.00;QD=12.06;ReadPosRankSum=0.111;SOR=0.351;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:411,0,681
chr4	38880167	rs11938589	C	T	527.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.102e+00;DB;DP=18;ExcessHet=3.9794;FS=4.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-4.220e-01;SOR=0.088;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:199,0,464
chr4	38880181	rs111676993	A	ATGTGT	256.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.54;ReadPosRankSum=0.254;SOR=0.105;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:13:96:96,0,603
chr4	38907022	rs73236670	A	T	34.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.31;ReadPosRankSum=-1.068e+00;SOR=0.693;VQSLOD=20.74;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,2:8:42:42,0,202
chr4	38916465	rs4563504	A	C	4310.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;DB;DP=73;ExcessHet=3.9794;FS=4.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=1.48;SOR=0.432;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,33:73:99:731,0,929
chr4	38924230	rs12513149	A	C	2117.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=42;ExcessHet=1.5490;FS=4.586;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=-1.240e-01;SOR=1.536;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1414,126,0
chr4	38924275	rs12509328	C	T	2515.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.014e+00;DB;DP=54;ExcessHet=1.5490;FS=2.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=-3.470e-01;SOR=1.040;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1582,162,0
chr4	38924330	rs10000037	G	A	2664.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.281e+00;DB;DP=57;ExcessHet=1.5490;FS=0.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=0.830;SOR=0.553;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1652,170,0
chr4	38924358	rs12498685	A	G	3033.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=62;ExcessHet=1.5490;FS=3.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=-1.144e+00;SOR=0.569;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1964,186,0
chr4	38924763	rs10002651	G	A	742.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.16;DB;DP=10;ExcessHet=1.5490;FS=5.528;MQ=60.00;MQRankSum=0.00;QD=29.69;ReadPosRankSum=2.32;SOR=3.417;VQSLOD=14.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:38924763_G_A:443,30,0:38924763
chr4	38924770	rs9994896	T	C	745.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.830e-01;DB;DP=9;ExcessHet=1.5490;FS=6.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.87;ReadPosRankSum=1.29;SOR=3.967;VQSLOD=13.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:30:1|1:38924763_G_A:443,30,0:38924763
chr4	38924777	rs9992489	A	G	620.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=7;ExcessHet=1.5490;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.01;ReadPosRankSum=0.564;SOR=3.737;VQSLOD=15.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:38924763_G_A:315,21,0:38924763
chr4	38930921	rs3188469	A	G	2022.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=84;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.475;SOR=0.693;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,36:84:99:938,0,1128
chr4	38932922	rs2291493	C	A	1904.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=22;ExcessHet=3.0103;FS=16.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.43;ReadPosRankSum=0.400;SOR=3.391;VQSLOD=11.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:65:806,65,0
chr4	38933690	rs4832792	A	C	430.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-1.256e+00;SOR=0.368;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:89:89,0,299
chr4	38933726	rs4833106	A	G	746.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.733e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-1.528e+00;SOR=0.622;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:248,0,345
chr4	38933859	rs17429619	G	A	5040.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=102;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-3.920e-01;SOR=0.689;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,52:102:99:1416,0,1242
chr4	38937372	rs2271031	T	C	6307.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.250e-01;DB;DP=74;ExcessHet=3.0103;FS=4.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=-1.061e+00;SOR=1.198;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2363,222,0
chr4	38942697	rs11398065	C	CT	592.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;DB;DP=12;ExcessHet=6.9897;FS=5.438;MQ=60.00;MQRankSum=0.00;QD=11.85;ReadPosRankSum=-9.700e-01;SOR=1.821;VQSLOD=4.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,9:12:42:172,0,42
chr4	38944812	.	CAA	C	67.91	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=22.64;SOR=2.833;VQSLOD=3.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:81,9,0
chr4	38944976	rs34903665	A	AT	5451.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.197;DB;DP=70;ExcessHet=3.0103;FS=0.728;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.40;ReadPosRankSum=-2.730e-01;SOR=0.856;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2568,213,0
chr4	38987710	rs35137679	C	T	312.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=1.38;SOR=1.112;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:70,0,66
chr4	38990230	rs17508162	T	C	443.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=-7.920e-01;SOR=0.283;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr4	38990265	rs62294540	T	C	324.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.49;ReadPosRankSum=0.431;SOR=0.473;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:38990265_T_C:90,6,0:38990265
chr4	38990271	rs112472821	T	TACTC	406.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.86;ReadPosRankSum=0.842;SOR=0.582;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:38990265_T_C:90,6,0:38990265
chr4	38990334	rs3821986	C	T	1477.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.507;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.98;ReadPosRankSum=0.212;SOR=0.925;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr4	38990784	rs3821987	A	G	74.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=2.303;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr4	38995310	rs11721954	A	G	1689.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=20;ExcessHet=6.9897;FS=1.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.36;ReadPosRankSum=-1.311e+00;SOR=0.427;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:395,0,226
chr4	38995374	rs10212770	T	C	7710.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.52;SOR=2.104;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2028,189,0
chr4	39000305	rs11542133	A	G	1302.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=40;ExcessHet=6.9897;FS=0.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-3.400e-02;SOR=0.587;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:434,0,579
chr4	39000569	rs73236699	C	T	857.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.100e-01;DB;DP=26;ExcessHet=6.9897;FS=2.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-1.164e+00;SOR=1.015;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:240,0,473
chr4	39000642	rs6848501	G	T	234.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=1.83;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:178,0,109
chr4	39000649	rs73236700	A	G	270.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.00;SOR=0.593;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,200
chr4	39034119	rs111780747	T	TAAAA	927.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.69;SOR=6.358;VQSLOD=6.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:7:21:263,21,0
chr4	39046586	rs111344840	CA	C	2569.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.35;SOR=3.981;VQSLOD=4.79;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,18:18:54:727,54,0
chr4	39046651	rs76308346	C	G	3075.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.301e+00;DB;DP=47;ExcessHet=3.0103;FS=3.546;MQ=60.00;MQRankSum=0.00;QD=24.03;ReadPosRankSum=-2.100e-02;SOR=1.220;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1310,141,0
chr4	39064126	rs2711942	G	C	6213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=2.719;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1954,174,0
chr4	39064162	rs2711941	A	C	10541.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=1.793;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3320,315,0
chr4	39064893	rs2566129	A	T	195.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.84;SOR=1.022;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	39064985	rs2566130	T	A	674.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.12;SOR=5.670;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr4	39065091	rs2711940	G	A	2819.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.46;SOR=3.884;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:692,57,0
chr4	39094738	rs2566149	G	A	5883.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=1.300;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1552,150,0
chr4	39104837	rs35745478	CTG	C	1878.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=14;ExcessHet=3.0103;FS=1.903;MQ=60.00;MQRankSum=0.00;QD=37.09;ReadPosRankSum=0.703;SOR=1.388;VQSLOD=5.56;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,14:14:42:630,42,0
chr4	39109399	rs12508577	A	G	3281.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=49;ExcessHet=3.9794;FS=2.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.461;SOR=0.483;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,23:49:99:529,0,644
chr4	39128073	rs2566162	A	G	2173.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.596;DB;DP=32;ExcessHet=3.0103;FS=3.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=0.288;SOR=1.206;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,13:32:99:303,0,438
chr4	39187521	rs111449236	TG	T	515.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.320e-01;DB;DP=30;ExcessHet=3.9794;FS=5.502;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.32;ReadPosRankSum=-5.320e-01;SOR=0.271;VQSLOD=6.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:30:99:292,0,277
chr4	39187522	rs6839511	G	*,T	1654.81	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=16.72;SOR=2.977;VQSLOD=14.77;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,16,14:30:99:1162,365,276,441,0,344
chr4	39196407	rs35702826	C	T	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-1.565e+00;SOR=0.693;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:237,0,202
chr4	39205365	rs1451817	C	T	5702.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.048;DB;DP=64;ExcessHet=3.0103;FS=8.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=1.02;SOR=0.274;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2027,192,0
chr4	39207318	rs17584431	A	G	333.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.880e-01;DB;DP=37;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.01;ReadPosRankSum=-1.518e+00;SOR=1.473;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:342,0,515
chr4	39207444	rs188095597	G	A	92.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=1.44;SOR=0.693;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,109
chr4	39216221	rs2167494	C	T	578.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.885e+00;DB;DP=43;ExcessHet=3.0103;FS=1.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-1.240e+00;SOR=1.002;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:587,0,613
chr4	39216393	rs372720511	AT	A	415.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370e+00;DB;DP=38;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.82;ReadPosRankSum=-7.860e-01;SOR=0.659;VQSLOD=5.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,9:38:83:83,0,509
chr4	39229771	rs11730558	G	A	510.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-1.790e-01;SOR=0.906;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:519,0,395
chr4	39233977	rs11729098	G	A	343.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.53;ReadPosRankSum=0.297;SOR=0.458;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,13:36:99:352,0,760
chr4	39242111	rs9998591	C	A	1896.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.137e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=1.12;SOR=1.432;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:245,0,211
chr4	39255369	rs7696849	T	A	111.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.68;SOR=2.833;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	39255398	.	CA	C	44.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.62;ReadPosRankSum=0.842;SOR=0.120;VQSLOD=5.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:34:34,0,86
chr4	39255496	rs33997556	A	G	453.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-2.530e-01;SOR=0.491;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:462,0,460
chr4	39259190	rs11096987	A	G	1358.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.551e+00;DB;DP=86;ExcessHet=3.0103;FS=3.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.588;SOR=1.154;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,52:86:99:1367,0,930
chr4	39268005	rs2008679	A	C	459.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.88;SOR=4.977;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:476,33,0
chr4	39268016	rs2008681	A	G	80.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.140e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.135;SOR=0.368;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:89:89,0,173
chr4	39271541	rs3733280	A	G	512.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;DB;DP=39;ExcessHet=3.0103;FS=1.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=1.99;SOR=0.399;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:521,0,423
chr4	39271913	rs3733281	T	C	265.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.53;SOR=0.892;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:281,27,0
chr4	39276623	rs11096989	A	AG	2027.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.11;SOR=1.159;VQSLOD=5.10;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2044,165,0
chr4	39279671	.	C	CA	309.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.088;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.26;ReadPosRankSum=-5.800e-02;SOR=0.660;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,7:24:99:113,0,249
chr4	39279724	rs12648082	T	C	1790.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=0.4576;FS=0.000;MQ=59.78;POSITIVE_TRAIN_SITE;QD=31.41;SOR=1.692;VQSLOD=5.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1807,169,0
chr4	39280428	rs5857667	AT	A	136.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.23;SOR=3.611;VQSLOD=4.95;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:153,15,0
chr4	39291812	rs6829064	G	A	107.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=2.833;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	39297200	rs2306597	G	A	782.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=43;ExcessHet=3.0103;FS=4.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=-1.530e+00;SOR=1.549;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,28:43:99:791,0,294
chr4	39297684	rs6531707	T	C	78.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=2.303;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	39301605	rs2066788	G	C	2573.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.654e+00;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.61;ReadPosRankSum=-1.386e+00;SOR=0.683;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1753,159,0
chr4	39302249	rs6531709	T	G	217.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=0.967;SOR=2.584;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr4	39302278	rs6531710	C	T	220.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.38;SOR=3.912;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr4	39303925	rs2066782	A	G	1389.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=115;ExcessHet=3.0103;FS=2.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.932;SOR=0.950;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,53:115:99:1398,0,1507
chr4	39308108	rs17288454	C	CCA	725.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.99;ReadPosRankSum=-3.280e-01;SOR=3.258;VQSLOD=4.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:92:163,0,92
chr4	39308187	rs2066789	G	A	995.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=17;ExcessHet=1.5490;FS=1.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-1.659e+00;SOR=1.371;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:319,0,192
chr4	39318706	rs2066790	A	G	167.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.497;SOR=1.270;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:176,0,146
chr4	39329102	rs11096992	G	A	2253.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.14;SOR=2.448;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2270,198,0
chr4	39344237	rs6812588	C	T	700.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.45;ReadPosRankSum=0.967;SOR=4.407;VQSLOD=13.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr4	39352873	.	GAAAAAAAAAAAAAA	G,GAAAA	1459	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.51;DP=22;ExcessHet=3.0103;FS=2.404;MQ=59.07;MQRankSum=0.00;QD=25.75;ReadPosRankSum=0.530;SOR=2.038;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,8,10:22:99:756,291,633,170,0,157
chr4	39353122	rs4975007	C	T	5679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.54;ReadPosRankSum=1.58;SOR=0.710;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2304,206,0
chr4	39367654	rs6851075	T	C	388.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=1.38;SOR=0.260;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:19:158,0,19
chr4	39368083	rs3736168	C	T	1240.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.52;SOR=2.494;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1257,111,0
chr4	39413650	rs58015370	A	T	58.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=-1.383e+00;SOR=2.303;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:67,0,37
chr4	39447779	rs2608824	A	G	624.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.16;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=-1.390e+00;SOR=0.356;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:356,27,0
chr4	39448529	rs17618244	G	A	4497.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.19;DB;DP=366;ExcessHet=3.0103;FS=0.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.189;SOR=0.696;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:190,176:366:99:4506,0,4452
chr4	39448542	rs7685429	C	G	19831.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e+00;DB;DP=359;ExcessHet=3.9794;FS=0.565;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=0.044;SOR=0.712;VQSLOD=6.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,359:359:99:10769,1077,0
chr4	39449824	rs2687967	G	A	366.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.57;ReadPosRankSum=0.00;SOR=2.670;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr4	39456392	rs1463478	G	A	753.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.984e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=-1.198e+00;SOR=0.588;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,25:44:99:762,0,614
chr4	39456635	rs10025155	T	C	768.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.910e-01;DB;DP=37;ExcessHet=3.9794;FS=2.030;MQ=59.93;MQRankSum=0.927;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=0.322;SOR=0.473;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,16:37:99:389,0,630
chr4	39457857	rs1015450	T	C	396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-7.680e-01;SOR=0.435;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:405,0,408
chr4	39457870	rs3216720	T	TG	2312.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.211e+00;DB;DP=34;ExcessHet=1.5490;FS=10.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.65;ReadPosRankSum=1.22;SOR=0.083;VQSLOD=3.74;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1371,102,0
chr4	39458051	rs2125313	A	G	4443.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=92;ExcessHet=1.5490;FS=2.025;MQ=59.73;MQRankSum=-1.436e+00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-9.970e-01;SOR=0.795;VQSLOD=0.488;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3072,276,0
chr4	39459154	rs2608830	G	A	598.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.327e+00;DB;DP=33;ExcessHet=3.0103;FS=4.384;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-2.009e+00;SOR=0.156;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:607,0,434
chr4	39459724	rs2687958	T	C	4922.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.60;DB;DP=97;ExcessHet=1.5490;FS=0.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=0.843;SOR=0.629;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3101,291,0
chr4	39460352	rs11550000	C	G	1322.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.028;SOR=0.733;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,7:23:99:238,0,555
chr4	39460797	rs2687959	G	A	1148.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=113;ExcessHet=3.0103;FS=2.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.16;ReadPosRankSum=0.935;SOR=0.462;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,51:113:99:1157,0,1487
chr4	39468954	rs6825961	C	T	98.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:105,0,62
chr4	39469416	rs9990499	C	G	1371.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706e+00;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=-8.300e-01;SOR=0.560;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:531,0,361
chr4	39472946	.	CT	C	1458.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DP=58;ExcessHet=3.9794;FS=1.552;MQ=59.88;MQRankSum=0.00;QD=9.47;ReadPosRankSum=0.735;SOR=0.522;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,16:58:99:262,0,642
chr4	39473072	rs2608831	C	T	457.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=-6.520e-01;SOR=2.049;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:373,27,0
chr4	39474868	rs749915	G	A	2650.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.553;DB;DP=86;ExcessHet=6.9897;FS=1.539;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-5.500e-01;SOR=0.801;VQSLOD=6.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,48:86:99:1123,0,825
chr4	39475074	rs2259073	A	C	57.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:66,0,34
chr4	39478832	rs1048140	G	A	3552.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.890e-01;DB;DP=62;ExcessHet=3.9794;FS=1.284;MQ=59.93;MQRankSum=1.08;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=0.087;SOR=0.581;VQSLOD=2.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1895,184,0
chr4	39501722	rs60656244	CAA	C	2116.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.360e-01;DB;DP=29;ExcessHet=3.9794;FS=4.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=-4.370e-01;SOR=0.331;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,7:29:99:143,0,416
chr4	39507083	rs4975019	G	T	119.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=1.24;SOR=1.329;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:128,0,188
chr4	39507524	rs11290546	TA	T	70.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.83;ReadPosRankSum=0.089;SOR=0.184;VQSLOD=6.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:2,2:4:35:45,0,35
chr4	39510329	rs56242282	C	T	80.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.721e+00;DB;DP=18;ExcessHet=3.0103;FS=2.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.46;ReadPosRankSum=-2.470e-01;SOR=0.105;VQSLOD=22.69;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,5:18:89:89,0,434
chr4	39511530	rs71645104	T	TA	452.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.62;ReadPosRankSum=0.213;SOR=0.818;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,23:47:99:461,0,491
chr4	39528752	rs4975020	G	A	2455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.440e-01;DB;DP=64;ExcessHet=6.9897;FS=5.397;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=0.316;SOR=1.150;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:906,0,740
chr4	39573924	.	G	T	30.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.81;ReadPosRankSum=-2.100e+00;SOR=1.445;VQSLOD=20.35;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:38:0|1:39573924_G_T:38,0,358:39573924
chr4	39606533	rs73240622	A	T	619.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.35;ReadPosRankSum=2.19;SOR=1.302;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:98:226,0,98
chr4	39606920	rs116650226	T	C	387.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.556;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.27;ReadPosRankSum=1.50;SOR=2.670;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,10:12:50:396,0,50
chr4	39700173	rs1055582	C	T	1006.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.757e+00;DB;DP=27;ExcessHet=3.9794;FS=1.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=2.23;SOR=1.191;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:546,0,315
chr4	39747536	rs302931	A	G	858.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.304;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=0.281;SOR=1.270;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:296,27,0
chr4	39757480	rs11389468	A	AT	4469.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.820e-01;DB;DP=48;ExcessHet=3.9794;FS=0.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=1.58;SOR=0.599;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1923,147,0
chr4	39776616	rs463918	G	A	700.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.230;SOR=0.759;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,5:21:99:110,0,427
chr4	39779233	rs3839129	AT	A	1248.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.046e+00;DB;DP=43;ExcessHet=3.9794;FS=8.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.58;ReadPosRankSum=-3.920e-01;SOR=0.182;VQSLOD=5.39;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,25:43:99:807,0,544
chr4	39827204	rs200023345	CT	C	75.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.78;ReadPosRankSum=-5.080e-01;SOR=0.941;VQSLOD=5.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:13:24:24,0,192
chr4	39827804	rs374518376	GTT	G	1816.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.039;DB;DP=28;ExcessHet=3.9794;FS=3.509;MQ=60.00;MQRankSum=0.00;QD=15.53;ReadPosRankSum=0.528;SOR=0.444;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,22:28:78:865,78,0
chr4	39839159	rs35238565	T	TA	62.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=2.303;VQSLOD=5.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr4	39846098	rs144079815	CAAA	C	1012.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.14;SOR=6.666;VQSLOD=5.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr4	39846460	.	G	A	1258.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DP=70;ExcessHet=3.0103;FS=1.217;MQ=60.00;MQRankSum=0.00;QD=17.98;ReadPosRankSum=-1.607e+00;SOR=1.056;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,42:70:99:1267,0,739
chr4	39851058	rs10664738	C	CAA	867.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270e-01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=59.78;MQRankSum=-3.430e-01;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=-2.860e-01;SOR=0.631;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,3:35:21:21,0,570
chr4	39864448	rs4547806	G	A	327.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=4.615;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:344,27,0
chr4	39871117	rs34039605	G	GA	1319.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.398;DB;DP=33;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.656;SOR=0.791;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:927,99,0
chr4	39875739	rs7698671	T	C	347.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.74;SOR=4.615;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr4	39891783	.	T	G	324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.77;ReadPosRankSum=-2.050e-01;SOR=1.296;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:68:186,0,68
chr4	39899798	rs115313226	C	T	176.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=8;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=0.703;SOR=2.833;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:185,0,99
chr4	39903924	rs77174235	G	A	419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.00;DB;DP=35;ExcessHet=3.0103;FS=6.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-2.860e-01;SOR=2.340;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,14:35:99:428,0,527
chr4	39904142	rs199900186	AT	A	304.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=24;ExcessHet=6.9897;FS=2.639;MQ=60.00;MQRankSum=0.00;QD=4.12;ReadPosRankSum=0.704;SOR=1.260;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,10:24:99:130,0,244
chr4	39910172	rs35396203	GA	G	1142.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=42;ExcessHet=3.9794;FS=2.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=1.08;SOR=1.127;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,31:42:99:821,0,209
chr4	39915041	rs11724667	G	C	151.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=1.38;SOR=0.892;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:56:56,0,74
chr4	39915454	rs11725674	G	C	999.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=29;ExcessHet=3.9794;FS=1.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=0.459;SOR=0.352;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:448,0,439
chr4	39918350	rs1967010	G	T	99.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.816;SOR=0.148;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:108,0,151
chr4	39918635	rs71194939	T	TA	1952.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DB;DP=66;ExcessHet=3.9794;FS=10.806;MQ=60.00;MQRankSum=0.00;QD=10.22;ReadPosRankSum=0.673;SOR=0.940;VQSLOD=2.39;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,9:66:19:0|1:39918635_T_TA:19,0,1789:39918635
chr4	39918636	rs10001599	A	T	1517.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=75;ExcessHet=3.9794;FS=6.163;MQ=60.00;MQRankSum=0.00;QD=10.46;ReadPosRankSum=0.959;SOR=1.016;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:43,32:75:99:1|0:39918635_T_TA:750,0,1049:39918635
chr4	39921942	rs28449663	A	G	1044.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=32;ExcessHet=3.9794;FS=1.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.905;SOR=0.491;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:415,0,382
chr4	39924372	rs373105119	T	TA	1205.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.039e+00;DB;DP=21;ExcessHet=3.9794;FS=11.900;MQ=60.00;MQRankSum=0.00;QD=12.96;ReadPosRankSum=0.151;SOR=0.086;VQSLOD=1.35;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,10:21:99:179,0,172
chr4	39928382	rs1531749	T	G	310.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.346;SOR=0.743;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,16:27:99:1|0:39928381_T_TG:319,0,333:39928381
chr4	40045687	rs17585937	C	T	1193.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.481e+00;DB;DP=84;ExcessHet=3.0103;FS=3.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-1.004e+00;SOR=0.366;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,48:84:99:1202,0,967
chr4	40045727	rs1704151	T	G	6822.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.11;SOR=1.808;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2361,207,0
chr4	40099297	rs793999	A	C	1082.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=6.518;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr4	40101537	rs144133716	C	T	424.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.860e-01;DB;DP=24;ExcessHet=3.0103;FS=4.269;MQ=60.00;MQRankSum=0.00;QD=17.68;ReadPosRankSum=-2.860e-01;SOR=1.795;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,17:24:99:433,0,180
chr4	40108750	rs1704154	C	T	448.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=5;ExcessHet=3.9794;FS=2.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=1.37;SOR=0.223;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:159,15,0
chr4	40121562	rs794001	G	A	2043.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=2.194;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:550,48,0
chr4	40337566	rs10015231	C	T	727.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=43;ExcessHet=3.0103;FS=1.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=1.86;SOR=0.473;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,26:43:99:736,0,413
chr4	40337908	rs10022491	T	C	1457.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=35;ExcessHet=3.9794;FS=3.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.96;ReadPosRankSum=1.45;SOR=0.340;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:564,0,327
chr4	40339574	rs6819385	A	G	100.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:109,0,62
chr4	40350763	rs10029872	T	C	2367.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=-8.210e-01;SOR=0.747;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:401,0,407
chr4	40355803	rs56012618	C	A	94.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.854;SOR=0.368;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:103,0,169
chr4	40355815	rs4861323	G	A	1349.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=-1.204e+00;SOR=2.891;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:147,0,109
chr4	40356041	rs55633891	C	T	2095.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910e-01;DB;DP=144;ExcessHet=3.0103;FS=2.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-6.140e-01;SOR=0.912;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,81:144:99:2104,0,1530
chr4	40356422	rs10009228	A	G	8781.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DB;DP=120;ExcessHet=3.0103;FS=0.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=0.241;SOR=0.650;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,48:120:99:1198,0,1850
chr4	40428010	rs278981	T	C	7017.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e+00;DB;DP=120;ExcessHet=3.9794;FS=6.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=0.254;SOR=0.993;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,52:120:99:1313,0,1922
chr4	40438576	rs2307046	A	G	6523.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=0.905;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2178,209,0
chr4	40438709	rs190402259	G	A	1101.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=35;ExcessHet=3.9794;FS=1.791;MQ=60.00;MQRankSum=0.00;QD=13.27;ReadPosRankSum=-6.800e-02;SOR=0.691;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,13:35:99:362,0,696
chr4	40438957	rs56769284	CG	C	1585.22	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.49;DB;DP=19;ExcessHet=3.9794;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.91;ReadPosRankSum=0.154;SOR=0.379;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:40438957_CG_C:804,57,0:40438957
chr4	40438961	.	A	C	1324.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.64;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.05;ReadPosRankSum=-1.060e-01;SOR=2.419;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:57:1|1:40438957_CG_C:804,57,0:40438957
chr4	40439071	rs1970852	G	A	545.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=5.421;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr4	40440215	rs2291580	T	C	36170.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=391;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.90;ReadPosRankSum=-9.760e-01;SOR=0.722;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,389:391:99:12311,1123,0
chr4	40440854	rs1052153	G	C	22147.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=248;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.43;SOR=2.237;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,248:248:99:7884,743,0
chr4	40777961	rs2465571	C	A	415.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.590e-01;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.579;SOR=1.426;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,5:21:99:131,0,598
chr4	40778146	rs2465570	C	T	3399.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=124;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.761;SOR=0.680;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,53:124:99:1302,0,1859
chr4	40778162	rs2437323	T	G	3468.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DB;DP=109;ExcessHet=6.9897;FS=3.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.163;SOR=0.519;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,53:109:99:1379,0,1519
chr4	40788210	rs2437314	T	C	1443.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-02;DB;DP=61;ExcessHet=3.9794;FS=0.685;MQ=54.54;MQRankSum=0.628;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.120;SOR=0.622;VQSLOD=-1.219e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,37:61:99:902,0,570
chr4	40792463	rs79583798	G	A	105.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:113,0,32
chr4	40809367	rs372231273	CT	C	153.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.272;SOR=0.569;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:40809367_CT_C:109,0,143:40809367
chr4	40809389	rs13128699	A	G	168.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.09;ReadPosRankSum=0.00;SOR=0.160;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:40809367_CT_C:122,0,122:40809367
chr4	40810663	rs4861066	A	G	1390.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.825;DB;DP=105;ExcessHet=3.0103;FS=1.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-2.410e-01;SOR=0.752;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,51:105:99:1399,0,1457
chr4	40810747	rs2261167	A	G	15796.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=150;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=1.15;SOR=0.785;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,148:150:99:4491,400,0
chr4	40823765	rs2465541	A	G	555.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=2.20;SOR=0.627;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:564,0,520
chr4	40825976	rs2465540	T	C	71.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:80,0,34
chr4	40832363	rs2437343	C	T	666.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=7;ExcessHet=6.9897;FS=3.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=0.366;SOR=2.124;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:61:189,0,61
chr4	40844199	rs1865605	T	C	1826.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.520e+00;DB;DP=41;ExcessHet=1.5490;FS=3.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-1.250e-01;SOR=0.381;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1199,122,0
chr4	40947112	rs186488629	C	T	82.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=58.66;MQRankSum=-1.599e+00;NEGATIVE_TRAIN_SITE;QD=5.88;ReadPosRankSum=-1.041e+00;SOR=0.905;VQSLOD=-1.417e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:91:91,0,204
chr4	41035354	rs116293599	C	T	756.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-4.590e-01;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,30:60:99:765,0,712
chr4	41258762	rs73809701	G	A	425.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.33;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-2.530e-01;SOR=0.770;VQSLOD=0.835;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:144,0,144
chr4	41259633	rs5030732	C	A	702.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.506e+00;DB;DP=40;ExcessHet=3.0103;FS=1.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=0.328;SOR=0.346;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,30:40:99:711,0,190
chr4	41263718	rs3214812	A	AT	553.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.339;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.86;ReadPosRankSum=-8.800e-02;SOR=0.892;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,11:16:70:251,0,70
chr4	41265527	rs55901744	CAA	C	1389.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=0.423;SOR=0.721;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,13:23:99:516,0,405
chr4	41265921	rs17528160	A	G	777.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.508;SOR=1.115;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:302,0,211
chr4	41265989	rs3756001	C	G	1246.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=41;ExcessHet=3.9794;FS=1.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=0.437;SOR=0.422;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,21:41:99:0|1:41265989_C_G:869,0,844:41265989
chr4	41265994	rs3756000	C	A	889.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=46;ExcessHet=3.0103;FS=1.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=-4.730e-01;SOR=0.446;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,24:46:99:0|1:41265989_C_G:898,0,841:41265989
chr4	41266295	rs3775256	C	T	1481.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.195e+00;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-7.210e-01;SOR=0.629;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:494,0,688
chr4	41496412	rs13140756	G	A	80.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.33;ReadPosRankSum=-1.910e-01;SOR=0.180;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:88:88,0,265
chr4	41526250	rs10014221	G	A	709.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701e+00;DB;DP=10;ExcessHet=6.9897;FS=9.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=1.28;SOR=3.528;VQSLOD=12.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:50:50,0,319
chr4	41526503	rs4266323	C	T	2790.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=32;ExcessHet=6.9897;FS=1.277;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=-1.220e+00;SOR=0.807;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,22:32:99:659,0,199
chr4	41607680	rs11942246	A	G	739.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=0.748;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.60;ReadPosRankSum=0.525;SOR=1.893;VQSLOD=0.345;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:56:161,0,56
chr4	41607754	rs11943304	T	C	2617.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=32;ExcessHet=3.9794;FS=1.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=-2.650e-01;SOR=0.935;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:461,0,366
chr4	41611575	rs1105886	A	G	2358.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.113;SOR=0.719;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,17:50:99:374,0,870
chr4	41615249	rs66955637	A	AT	414.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=15.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.00;SOR=3.239;VQSLOD=0.308;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,2:4:49:49,0,49
chr4	41615690	rs13146318	T	A	3394.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.840e-01;DB;DP=46;ExcessHet=3.9794;FS=1.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=1.20;SOR=0.971;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:726,0,649
chr4	41623048	rs13113314	T	C	410.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=4.977;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr4	41629036	.	GGTGT	G,GGTGTGT	843.63	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.00;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.80;MQRankSum=0.00;QD=22.80;ReadPosRankSum=0.085;SOR=0.729;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,4,3:15:76:224,76,252,101,0,157
chr4	41631718	rs28622470	C	T	1660.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=85;ExcessHet=3.9794;FS=2.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=0.689;SOR=0.493;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1004,0,891
chr4	41633094	rs67571350	GT	G	302.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.475;DB;DP=14;ExcessHet=3.9794;FS=2.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.16;ReadPosRankSum=0.861;SOR=1.538;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,3:14:86:0|1:41633094_GT_G:86,0,607:41633094
chr4	41633110	rs112115335	C	A	117.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;DB;DP=25;ExcessHet=3.0103;FS=2.644;MQ=60.00;MQRankSum=0.00;QD=4.69;ReadPosRankSum=-6.130e-01;SOR=1.802;VQSLOD=20.49;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,5:25:99:0|1:41633094_GT_G:126,0,883:41633094
chr4	41633322	rs73135482	C	A	4349.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DB;DP=144;ExcessHet=3.9794;FS=2.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.666;SOR=0.855;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,66:144:99:1782,0,1993
chr4	41634777	rs4590080	G	C	3765.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=115;ExcessHet=3.9794;FS=4.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=1.62;SOR=0.747;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,50:115:99:1217,0,1501
chr4	41635034	rs7657178	A	G	1207.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=53;ExcessHet=3.9794;FS=14.011;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=0.025;SOR=1.890;VQSLOD=13.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:598,0,787
chr4	41635833	rs10015266	A	G	727.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.936e+00;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=-2.400e-01;SOR=0.641;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,32:74:99:736,0,1184
chr4	41635856	rs10017698	T	G	621.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=62;ExcessHet=3.0103;FS=1.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=0.490;SOR=0.896;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,27:62:99:630,0,987
chr4	41640878	rs6836918	C	T	2718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.040e-01;DB;DP=126;ExcessHet=3.9794;FS=2.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=0.159;SOR=0.909;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,74:126:99:1758,0,1205
chr4	41646651	rs2304647	G	C	2543.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DB;DP=117;ExcessHet=3.9794;FS=3.033;MQ=59.99;MQRankSum=0.943;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.897;SOR=0.517;VQSLOD=2.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:63,54:117:99:1341,0,1679
chr4	41648894	rs199602150	T	G	610.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.710e+00;DB;DP=66;ExcessHet=3.0103;FS=6.931;MQ=60.00;MQRankSum=0.00;QD=9.25;ReadPosRankSum=0.326;SOR=0.348;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,27:66:99:619,0,1138
chr4	41649103	rs9291207	T	C	250.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=-7.120e-01;SOR=0.582;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:62:62,0,201
chr4	41652293	rs2289338	C	G	534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=0.522;SOR=0.846;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:361,0,126
chr4	41663621	rs17528897	G	A	3201.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.539;DB;DP=24;ExcessHet=3.0103;FS=1.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=-8.090e-01;SOR=0.957;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:913,72,0
chr4	41663798	rs28510221	T	C	356.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.770e-01;DB;DP=10;ExcessHet=3.9794;FS=5.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=-9.060e-01;SOR=0.068;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:176,0,172
chr4	41663833	rs113749170	G	C	249.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.470e-01;DB;DP=9;ExcessHet=3.9794;FS=1.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.325;SOR=1.162;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:167,0,147
chr4	41663935	rs78605481	TAAA	T	1398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=41;ExcessHet=3.9794;FS=3.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.33;SOR=1.090;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,15:41:99:531,0,1333
chr4	41668465	rs17444537	C	A	1925.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.40;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.57;ReadPosRankSum=-4.220e-01;SOR=1.643;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:624,54,0
chr4	41673414	rs141018823	A	AACACACAC	311.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=57.65;MQRankSum=-1.611e+00;QD=23.99;ReadPosRankSum=-2.720e-01;SOR=1.179;VQSLOD=0.370;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:99:111,0,343
chr4	41673604	rs11734372	T	C	3725.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.944e+00;DB;DP=65;ExcessHet=3.0103;FS=3.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.51;ReadPosRankSum=0.515;SOR=0.382;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1795,194,0
chr4	41683212	rs6816179	A	G	1630.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=69;ExcessHet=3.9794;FS=0.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=0.975;SOR=0.791;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,39:69:99:1040,0,694
chr4	41687911	rs2304652	A	G	969.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=18;ExcessHet=1.5490;FS=6.125;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=-1.156e+00;SOR=1.946;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:205,0,225
chr4	41689974	rs1371297	A	G	3426.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.527e+00;DB;DP=79;ExcessHet=1.5490;FS=3.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=-8.990e-01;SOR=0.581;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,42:79:99:990,0,940
chr4	41691601	rs1061597	T	C	2001.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=101;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=0.457;SOR=0.658;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,43:101:99:1048,0,1408
chr4	41748511	rs2196822	T	G	1427.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;DB;DP=50;ExcessHet=3.9794;FS=6.531;MQ=60.00;MQRankSum=0.00;QD=15.86;ReadPosRankSum=-1.611e+00;SOR=1.501;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:701,0,678
chr4	41749265	rs28647582	T	C	1618.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-02;DB;DP=62;ExcessHet=3.9794;FS=0.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.630;SOR=0.818;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,36:62:99:1150,0,785
chr4	41749668	rs6811325	C	T	3172.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.46;DB;DP=134;ExcessHet=3.9794;FS=4.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.418;SOR=0.970;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,66:134:99:1756,0,1730
chr4	41937458	rs41265681	C	T	2121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-01;DB;DP=175;ExcessHet=3.0103;FS=2.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-7.000e-02;SOR=0.912;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,84:175:99:2130,0,2359
chr4	41937687	rs77918098	G	C	933.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.949e+00;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.855;SOR=0.631;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,36:74:99:942,0,1138
chr4	41940576	rs16853777	G	A	935.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.460e-01;DB;DP=77;ExcessHet=3.0103;FS=6.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=1.33;SOR=1.471;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,36:77:99:944,0,1127
chr4	41940843	rs113134875	C	A	257.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840e-01;DB;DP=14;ExcessHet=3.0103;FS=3.680;MQ=58.88;MQRankSum=-5.660e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=-1.870e-01;SOR=2.303;VQSLOD=-1.637e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:266,0,177
chr4	41941508	rs75529279	C	T	57.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-1.645e+00;SOR=1.609;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,102
chr4	41941737	rs116509699	G	C	297.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=36;ExcessHet=3.0103;FS=2.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.26;ReadPosRankSum=-1.417e+00;SOR=1.244;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,13:36:99:306,0,620
chr4	41945537	rs113947776	T	C	253.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.59;SOR=3.912;VQSLOD=19.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:41945537_T_C:270,18,0:41945537
chr4	41945542	.	C	CA	300.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.11;ReadPosRankSum=1.47;SOR=1.609;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,6:7:5:0|1:41945537_T_C:249,0,5:41945537
chr4	41951250	rs3804186	T	C	582.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605e+00;DB;DP=55;ExcessHet=3.0103;FS=1.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-1.770e-01;SOR=0.544;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:591,0,788
chr4	41984118	rs2660320	C	T	15171.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.534e+00;DB;DP=257;ExcessHet=3.9794;FS=0.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=0.166;SOR=0.600;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,257:257:99:7827,768,0
chr4	41985101	rs2660332	A	G	4270.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.603e+00;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=1.12;SOR=0.990;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2403,192,0
chr4	41992346	rs71650956	G	GTGA	684.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.120e+00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=-8.400e-02;SOR=0.368;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:15:212,15,0
chr4	41992677	rs2581434	C	G	4754.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.195;DB;DP=73;ExcessHet=3.9794;FS=1.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=1.04;SOR=0.829;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2293,219,0
chr4	42003671	rs1047626	A	G	2148.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269e+00;DB;DP=46;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-6.130e-01;SOR=0.711;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:626,0,526
chr4	42003835	rs2581453	C	G	1484.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.177;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=0.783;SOR=0.801;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:815,75,0
chr4	42020142	rs2581423	A	G	3792.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=0.905;VQSLOD=18.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1162,125,0
chr4	42020347	rs2581422	A	G	1021.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DB;DP=15;ExcessHet=3.9794;FS=7.354;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.931;SOR=1.941;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:531,45,0
chr4	42022237	rs2581420	G	T	700.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=-1.100e+00;SOR=1.609;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:288,21,0
chr4	42022352	rs73810480	C	T	419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=32;ExcessHet=3.0103;FS=5.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=-5.950e-01;SOR=1.981;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,13:32:99:428,0,478
chr4	42022464	rs15857	C	A	3682.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.630e-01;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-4.370e-01;SOR=0.732;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1702,165,0
chr4	42024982	rs13107768	A	G	2251.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=30;ExcessHet=3.9794;FS=5.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=0.851;SOR=0.335;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1081,90,0
chr4	42025049	rs3213766	A	G	906.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.95;DB;DP=11;ExcessHet=3.9794;FS=1.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-5.300e-02;SOR=1.051;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:464,33,0
chr4	42025207	rs3213767	A	G	2763.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=2.359;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:756,78,0
chr4	42037516	rs374689755	CT	C	124.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.375e+00;DB;DP=13;ExcessHet=3.0103;FS=3.041;MQ=60.00;MQRankSum=0.00;QD=13.81;ReadPosRankSum=-1.691e+00;SOR=0.116;VQSLOD=5.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:13:48:133,0,48
chr4	42040947	rs12641900	C	T	1789.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.980e-01;DB;DP=33;ExcessHet=3.9794;FS=1.677;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=0.241;SOR=0.490;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:990,99,0
chr4	42051257	rs7684837	A	G	1377.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=0.746;SOR=0.752;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:710,51,0
chr4	42051608	rs4241696	T	G	1085.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.13;ReadPosRankSum=0.085;SOR=0.631;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:282,21,0
chr4	42065269	rs3804190	A	G	1273.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.912;SOR=0.844;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:568,45,0
chr4	42065293	rs3804191	C	T	687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=0.377;SOR=0.569;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:137,0,137
chr4	42067526	rs78572737	T	G	176.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=-1.800e-01;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:61:185,0,61
chr4	42069029	rs12643893	T	C	2218.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218e+00;DB;DP=36;ExcessHet=6.9897;FS=0.735;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-6.220e-01;SOR=0.570;VQSLOD=6.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:535,0,516
chr4	42069331	rs11409064	C	CA	1435.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.37;DB;DP=16;ExcessHet=3.9794;FS=2.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=0.299;SOR=0.322;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:631,48,0
chr4	42069454	rs7663447	C	A	244.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.87;SOR=3.912;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	42072860	rs6823291	T	G	1245.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=6.869;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:295,21,0
chr4	42077483	rs201224389	C	CA	64.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:17:73,0,17
chr4	42119951	rs5857832	TA	T	201.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.00;SOR=0.540;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:39:68,0,39
chr4	42121774	rs3810840	G	A	56.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,78
chr4	42121885	rs76217286	C	T	192.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.02;ReadPosRankSum=-3.100e-01;SOR=1.863;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:201,0,200
chr4	42127762	.	G	GT	65.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DP=5;ExcessHet=3.9794;FS=2.112;MQ=60.00;MQRankSum=0.00;QD=3.62;ReadPosRankSum=1.18;SOR=1.329;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,2:5:37:37,0,64
chr4	42400112	rs11733156	G	T	2465.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427e+00;DB;DP=80;ExcessHet=3.9794;FS=2.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=1.54;SOR=0.526;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,43:80:99:1181,0,1073
chr4	42400428	rs7674491	G	A	2347.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761e+00;DB;DP=105;ExcessHet=3.9794;FS=4.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=2.09;SOR=0.435;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,45:105:99:1030,0,1723
chr4	42417007	rs11726581	T	C	71.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.91;ReadPosRankSum=-4.310e-01;SOR=1.179;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:80,0,31
chr4	42425852	rs4324577	T	C	142.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,106
chr4	42445427	rs6851048	C	G	481.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:149,0,129
chr4	42446821	rs10004341	T	C	825.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=4.892;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:331,27,0
chr4	42448789	rs35005173	T	TA	1208.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.630;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=1.39;SOR=4.615;VQSLOD=2.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:456,51,0
chr4	42448878	rs4861027	C	T	436.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=5.136;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr4	42454317	rs12504802	A	C	225.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=-2.530e-01;SOR=1.085;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr4	42466641	rs12647640	C	T	589.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.73;ReadPosRankSum=-1.178e+00;SOR=0.873;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:181,0,101
chr4	42487376	rs4269210	C	A	144.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-1.282e+00;SOR=1.329;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:151,0,61
chr4	42487856	rs73235584	G	C	521.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.782e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=1.82;SOR=0.756;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,9:15:99:0|1:42487856_G_C:284,0,208:42487856
chr4	42487857	rs4441793	C	G	2549.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=5.318;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:42487856_G_C:653,45,0:42487856
chr4	42526711	rs73235594	C	A	640.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.223e+00;DB;DP=22;ExcessHet=3.9794;FS=6.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=1.00;SOR=0.055;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:386,0,306
chr4	42551164	rs3811769	T	C	638.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.470e-01;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=1.22;SOR=0.527;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:335,0,248
chr4	42557859	rs73235601	C	A	283.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.65;ReadPosRankSum=2.10;SOR=0.425;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:58:58,0,247
chr4	42571074	rs6845603	A	T	689.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=2.200;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	42576420	rs2290870	T	C	294.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.253;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,105
chr4	42576522	rs2290869	C	T	1847.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-1.310e-01;SOR=0.705;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:327,0,562
chr4	42577900	rs6839779	A	G	307.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=-4.970e-01;SOR=0.540;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:63:63,0,190
chr4	42580434	rs200997614	T	G	1677.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.13;ReadPosRankSum=0.062;SOR=0.717;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,45:104:99:0|1:42580434_T_G:1686,0,2963:42580434
chr4	42580442	rs2306007	T	C	3002.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=96;ExcessHet=3.9794;FS=1.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=0.139;SOR=0.538;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:53,43:96:99:0|1:42580434_T_G:1640,0,2882:42580434
chr4	42582047	rs6447171	A	C	1960.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=3.745;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:752,57,0
chr4	42583442	rs41265701	G	A	251.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.44;ReadPosRankSum=0.667;SOR=0.708;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:81:81,0,324
chr4	42588301	rs3214048	G	A	1648.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.783e+00;DB;DP=56;ExcessHet=3.9794;FS=3.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-3.360e-01;SOR=0.386;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,34:56:99:1159,0,687
chr4	42592658	rs922156	T	C	156.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.43;SOR=3.258;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr4	42592935	rs3833615	C	CA	2249.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.805;DB;DP=36;ExcessHet=3.0103;FS=1.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=-1.740e-01;SOR=0.872;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,33:36:24:783,24,0
chr4	42596461	rs33933178	TAC	T	915.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=6.184;VQSLOD=6.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:312,21,0
chr4	42602606	rs6819419	A	C	5163.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.86;SOR=2.014;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1311,111,0
chr4	42617935	rs10003317	A	G	533.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.462e+00;DB;DP=19;ExcessHet=3.9794;FS=4.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.826;SOR=1.593;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:216,0,319
chr4	42618021	rs113477520	T	TA	1701.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300e-01;DB;DP=58;ExcessHet=3.9794;FS=5.263;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.380e-01;SOR=0.383;VQSLOD=6.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,26:58:99:796,0,1024
chr4	42618138	rs10033628	A	G	906.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=1.16;SOR=0.684;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:517,0,444
chr4	42626659	rs11306052	GA	G	3524.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=62;ExcessHet=3.0103;FS=7.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=-5.590e-01;SOR=0.266;VQSLOD=5.81;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,54:62:99:1445,155,0
chr4	42626972	rs4861209	T	C	1432.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.94;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.48;ReadPosRankSum=1.31;SOR=1.230;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:177,15,0
chr4	42627361	rs6842822	G	A	379.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.480e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.29;ReadPosRankSum=0.947;SOR=1.473;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr4	42627389	rs6825797	T	C	663.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=1.29;SOR=1.220;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:42627389_T_C:198,0,147:42627389
chr4	42627395	rs6844349	C	G	663.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.754e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.68;ReadPosRankSum=1.71;SOR=1.179;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:42627389_T_C:198,0,147:42627389
chr4	42627805	rs1460358	A	C	2892.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=4.265;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:879,69,0
chr4	42627836	rs2306004	C	T	357.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-7.230e-01;SOR=0.368;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:126,0,265
chr4	42628788	rs1870609	C	T	670.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.430e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=0.979;SOR=1.445;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,9:15:99:0|1:42628788_C_T:357,0,508:42628788
chr4	42628793	rs1870608	G	C	670.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.305e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=1.64;SOR=1.179;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,9:16:99:0|1:42628788_C_T:357,0,508:42628788
chr4	42639186	rs898500	A	G	4342.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.999;DB;DP=125;ExcessHet=6.9897;FS=2.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=0.267;SOR=0.790;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,54:125:99:1335,0,1660
chr4	42659028	rs12503784	T	C	2016.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.746e+00;DB;DP=35;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.24;ReadPosRankSum=-3.320e-01;SOR=0.951;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:761,0,347
chr4	42659139	rs4629487	G	A	213.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=4.7712;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=0.00;SOR=0.061;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,110
chr4	42965159	rs10213360	A	C	7443.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.26;SOR=1.137;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3076,301,0
chr4	43032612	rs4861050	G	A	459.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DB;DP=21;ExcessHet=3.9794;FS=3.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=1.38;SOR=0.204;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:240,0,269
chr4	44626641	rs60959366	A	G	768.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=12;ExcessHet=6.9897;FS=2.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.327;SOR=1.402;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:138,0,256
chr4	44626846	rs6838327	G	A	2970.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DB;DP=79;ExcessHet=6.9897;FS=0.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=-6.400e-02;SOR=0.750;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,39:79:99:999,0,990
chr4	44631587	rs6813809	A	G	849.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=20;ExcessHet=3.9794;FS=1.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=-3.420e-01;SOR=1.096;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:325,0,211
chr4	44651968	.	C	CA	177.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DP=34;ExcessHet=3.0103;FS=2.114;MQ=60.00;MQRankSum=0.00;QD=5.72;ReadPosRankSum=-2.280e-01;SOR=0.972;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,11:34:99:186,0,444
chr4	44652187	rs1113098	C	G	1546.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.867e+00;DB;DP=18;ExcessHet=3.9794;FS=2.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=1.02;SOR=0.175;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:683,54,0
chr4	44653414	rs1388310	G	C	164.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=3.611;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr4	44680536	rs3833629	TGA	T	60.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.63;ReadPosRankSum=1.47;SOR=0.223;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:69:69,0,216
chr4	44682465	rs6447368	T	C	3474.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040e-01;DB;DP=69;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-4.540e-01;SOR=0.685;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,39:69:99:921,0,667
chr4	44684438	rs2306993	A	G	717.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.672;DB;DP=80;ExcessHet=3.0103;FS=2.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=0.415;SOR=1.053;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,31:80:99:726,0,1197
chr4	44684455	rs13117025	C	T	8332.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.94;SOR=1.696;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2169,213,0
chr4	44684507	rs9291245	C	T	4765.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.72;SOR=3.327;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1255,108,0
chr4	44685224	rs112232487	T	TA	5379.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.36;SOR=1.911;VQSLOD=4.92;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:44685224_T_TA:1804,123,0:44685224
chr4	44685225	rs58659516	T	A	5379.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.27;SOR=1.837;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:44685224_T_TA:1804,123,0:44685224
chr4	44690320	rs1491304	A	T	358.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=0.253;SOR=1.061;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:111,0,62
chr4	44691206	rs3215027	TA	T	884.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540e-01;DB;DP=15;ExcessHet=6.9897;FS=3.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.023;SOR=0.140;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,5:15:99:133,0,311
chr4	44691795	rs11373408	T	TA	3805.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.241;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=-4.230e-01;SOR=0.828;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,49:57:46:1156,46,0
chr4	44696538	rs12641137	C	G	3758.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=1.919;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1554,150,0
chr4	44697921	rs9291246	A	G	248.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.080e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=1.01;SOR=0.307;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:95:95,0,180
chr4	44699484	rs6851576	T	G	2368.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DB;DP=87;ExcessHet=6.9897;FS=6.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-3.370e-01;SOR=1.093;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,40:87:99:883,0,1124
chr4	44699506	rs6821295	C	T	2226.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.216e+00;DB;DP=86;ExcessHet=6.9897;FS=1.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.511;SOR=0.824;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,38:86:99:850,0,1220
chr4	44699585	rs73815518	G	T	707.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-1.840e-01;SOR=0.648;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,23:34:99:716,0,286
chr4	44705311	rs7680955	A	G	59.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:68,0,67
chr4	44709695	rs1491302	C	T	1012.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=6.439;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:291,21,0
chr4	44712908	rs3749582	T	C	1953.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521e+00;DB;DP=35;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-4.290e-01;SOR=0.703;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:465,0,479
chr4	44713235	rs1124828	A	G	883.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.961;DB;DP=14;ExcessHet=6.9897;FS=3.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=0.943;SOR=2.448;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:274,0,200
chr4	44719008	rs1873523	C	T	720.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=-7.800e-01;SOR=0.430;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:133,0,169
chr4	44719048	rs1873522	A	T	1219.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=21;ExcessHet=6.9897;FS=3.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.09;SOR=1.524;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:219,0,398
chr4	44720248	rs3792705	T	A	2214.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.688e+00;DB;DP=33;ExcessHet=6.9897;FS=2.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.027;SOR=0.481;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:474,0,367
chr4	46086060	rs976156	T	C	2380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.709e+00;DB;DP=46;ExcessHet=6.9897;FS=1.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.942;SOR=0.856;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:536,0,574
chr4	46263862	rs35496835	A	AG	1998.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.218;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=-1.170e-01;SOR=0.868;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,10:29:99:0|1:46263862_A_AG:363,0,1217:46263862
chr4	46263864	rs10938435	T	A	1998.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.68;ReadPosRankSum=-1.170e-01;SOR=0.846;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,10:29:99:0|1:46263862_A_AG:363,0,1217:46263862
chr4	46305733	rs279871	T	C	634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.10;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.119;SOR=0.551;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:317,0,156
chr4	46307394	rs279870	G	A	597.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=15;ExcessHet=6.9897;FS=2.120;MQ=59.24;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-1.120e-01;SOR=1.460;VQSLOD=-1.686e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:218,0,194
chr4	46307431	rs35011150	T	TA	371.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DB;DP=26;ExcessHet=6.9897;FS=1.090;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.77;ReadPosRankSum=0.236;SOR=0.432;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,13:26:99:241,0,239
chr4	46314593	rs279858	T	C	2014.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=91;ExcessHet=3.9794;FS=0.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.884;SOR=0.744;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,42:91:99:998,0,1172
chr4	46334702	rs279827	A	G	2058.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.11;DB;DP=37;ExcessHet=1.5490;FS=0.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=-1.219e+00;SOR=0.592;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1201,111,0
chr4	46334810	rs279828	A	C	1576.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.54;ReadPosRankSum=-1.453e+00;SOR=0.665;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:745,72,0
chr4	46994972	rs3215202	GA	G	590.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DB;DP=29;ExcessHet=3.9794;FS=1.703;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=0.380;SOR=0.900;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,16:29:99:341,0,257
chr4	46995170	rs2280072	G	C	181.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=-5.890e-01;SOR=1.022;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:190,0,142
chr4	47033770	rs33980898	TCG	T	4245.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=72;ExcessHet=1.5490;FS=3.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=0.783;SOR=0.830;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,30:72:99:1057,0,1569
chr4	47034075	rs45460902	G	A	3542.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740e-01;DB;DP=44;ExcessHet=1.5490;FS=3.438;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.02;ReadPosRankSum=0.376;SOR=1.219;VQSLOD=6.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,22:44:99:0|1:47034075_G_A:640,0,636:47034075
chr4	47034090	rs71654859	C	CA	174.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.050e-01;DB;DP=22;ExcessHet=3.0103;FS=4.246;MQ=60.00;MQRankSum=0.00;QD=7.92;ReadPosRankSum=2.47;SOR=0.621;VQSLOD=4.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:15,7:22:99:183,0,548
chr4	47034103	rs67779259	AG	A	632.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.555e+00;DB;DP=18;ExcessHet=3.9794;FS=3.944;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.356;SOR=1.371;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,9:18:99:0|1:47034075_G_A:290,0,291:47034075
chr4	47034104	rs6847977	G	A,*	803.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.571e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.69;MQRankSum=0.855;QD=8.92;ReadPosRankSum=0.438;SOR=0.748;VQSLOD=-6.857e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,7,9:17:99:536,240,249,198,0,255
chr4	47034136	rs77472678	A	C	93.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.381;DB;DP=11;ExcessHet=3.0103;FS=2.632;MQ=60.00;MQRankSum=0.00;QD=8.48;ReadPosRankSum=1.72;SOR=0.991;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,3:11:99:0|1:47034136_A_C:102,0,302:47034136
chr4	47034144	.	G	GACAC	724.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.24;ReadPosRankSum=1.72;SOR=0.804;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,3:11:99:0|1:47034136_A_C:102,0,302:47034136
chr4	47034145	rs71193897	G	GCA,A	1225.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.560e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.12;ReadPosRankSum=0.158;SOR=0.872;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,4,3:9:57:162,69,102,57,0,251
chr4	47034626	rs41309288	C	G	11482.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.452e+00;DB;DP=272;ExcessHet=1.5490;FS=2.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=-3.060e-01;SOR=0.756;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:142,130:272:99:3086,0,3651
chr4	47163087	rs988944	G	A	244.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.57;SOR=3.912;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	47163234	.	CT	C	70.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.530e-01;DP=21;ExcessHet=3.9794;FS=1.337;MQ=60.00;MQRankSum=0.00;QD=1.13;ReadPosRankSum=0.435;SOR=0.831;VQSLOD=5.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:18,3:21:17:17,0,396
chr4	47322190	rs4482737	T	C	6893.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139e+00;DB;DP=86;ExcessHet=3.0103;FS=7.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.01;ReadPosRankSum=1.60;SOR=0.316;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2493,258,0
chr4	47322382	rs3775534	A	G	69.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.193e+00;DB;DP=12;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.77;ReadPosRankSum=-3.250e-01;SOR=0.048;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:78:78,0,289
chr4	47408709	rs6289	A	G	3084.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.520e-01;DB;DP=64;ExcessHet=1.5490;FS=4.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=1.59;SOR=0.380;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:716,0,972
chr4	47514685	rs33995001	C	T	4544.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=0.883;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,147:147:99:4561,440,0
chr4	47524961	rs12509973	T	A	179.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=0.105;SOR=1.022;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:61:188,0,61
chr4	47524997	rs11368204	CT	C	497.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=-1.539e+00;SOR=1.085;VQSLOD=6.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,22:38:99:506,0,336
chr4	47525009	rs5858076	T	A	5990.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=2.756;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1816,147,0
chr4	47525054	rs7683838	T	C	1068.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.415e+00;DB;DP=97;ExcessHet=3.0103;FS=0.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=1.64;SOR=0.605;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,47:97:99:1077,0,1235
chr4	47538360	rs13152689	T	C	1883.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.319e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=-4.000e-01;SOR=0.836;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:283,0,198
chr4	47557129	rs6823365	G	A	322.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=6;ExcessHet=3.9794;FS=6.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=1.12;SOR=0.057;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:65:65,0,125
chr4	47560002	rs34208443	C	A	1651.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270e+00;DB;DP=103;ExcessHet=3.0103;FS=3.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=-8.900e-01;SOR=0.409;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,60:103:99:1660,0,1171
chr4	47560386	rs4298115	C	T	1722.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.828e+00;DB;DP=33;ExcessHet=1.5490;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-7.010e-01;SOR=0.430;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1254,99,0
chr4	47561141	rs13106043	G	A	2509.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.024e+00;DB;DP=68;ExcessHet=1.5490;FS=1.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=0.988;SOR=0.516;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1887,203,0
chr4	47561179	rs11730590	C	T	2020.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.161e+00;DB;DP=49;ExcessHet=1.5490;FS=3.938;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=-1.814e+00;SOR=0.303;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1605,147,0
chr4	47562820	rs73237101	T	C	284.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=14;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=1.40;SOR=2.303;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:293,0,168
chr4	47565862	rs71951443	T	TA	638.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.50;ReadPosRankSum=-2.340e-01;SOR=1.151;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,3:14:42:42,0,268
chr4	47574596	rs73238608	A	G	70.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.524;SOR=0.223;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:79,0,70
chr4	47574661	rs138426135	CGTGTGT	C,CGTGTGTGTGT	1058.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.90;SOR=4.174;VQSLOD=4.85;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,2:6:72:252,84,72,168,0,162
chr4	47575461	rs7699613	T	C	289.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=0.967;SOR=1.402;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:80,0,29
chr4	47578971	rs16851681	G	A	3787.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.017e+00;DB;DP=107;ExcessHet=3.9794;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-1.510e-01;SOR=0.562;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,58:107:99:1386,0,1192
chr4	47582387	rs2351791	A	C	15848.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=1.172;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4062,389,0
chr4	47588848	rs2271034	T	C	593.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=4.294;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:174,18,0
chr4	47589299	rs2351790	C	A	5473.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=2.803;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1116,93,0
chr4	47592997	rs71199986	G	GT	1678.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.460e-01;DB;DP=26;ExcessHet=1.5490;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.97;ReadPosRankSum=2.03;SOR=1.435;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:47592997_G_GT:1164,78,0:47592997
chr4	47593008	rs1316781	T	C	3263.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=1.358;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:84:1|1:47592997_G_GT:1230,84,0:47592997
chr4	47593283	rs4145944	G	C	2879.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.933;DB;DP=58;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=0.702;SOR=0.742;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,56:58:99:1631,124,0
chr4	47602375	rs13306282	A	T	541.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.429;SOR=0.512;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:550,0,781
chr4	47605318	rs10004474	G	C	983.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.955e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=-4.620e-01;SOR=0.368;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:653,51,0
chr4	47625401	rs7682364	T	A	1917.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.44;ReadPosRankSum=-9.620e-01;SOR=0.699;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:72:1|1:47625401_T_A:1040,72,0:47625401
chr4	47625410	rs7699738	C	T	1919.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.540e-01;DB;DP=23;ExcessHet=1.5490;FS=1.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.00;ReadPosRankSum=-1.738e+00;SOR=0.443;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:47625401_T_A:999,69,0:47625401
chr4	47625811	rs3215139	TA	T	2559.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.897;DB;DP=46;ExcessHet=1.5490;FS=4.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=0.289;SOR=1.199;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1641,138,0
chr4	47626034	rs1344122	C	T	1593.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.088e+00;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=1.08;SOR=0.757;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1022,96,0
chr4	47628701	rs10005710	C	T	834.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.838e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.92;ReadPosRankSum=0.349;SOR=2.303;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:554,45,0
chr4	47667064	rs11934749	T	C	6866.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=1.621;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2096,189,0
chr4	47682174	rs10517195	A	G	5170.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=177;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=1.02;SOR=1.205;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,175:177:99:5187,480,0
chr4	47839929	rs2289433	C	T	4512.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=1.20;SOR=0.648;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,64:66:99:2012,147,0
chr4	47853843	rs6822668	T	C	5188.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=-5.470e-01;SOR=0.652;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1724,165,0
chr4	47857040	rs7690499	T	C	452.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.14;SOR=1.911;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:469,45,0
chr4	47878949	rs56686194	A	G	64.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.39;SOR=2.303;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr4	47887536	rs2053404	T	C	5264.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.911e+00;DB;DP=76;ExcessHet=3.0103;FS=7.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=0.885;SOR=0.318;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2329,227,0
chr4	47887991	rs6818556	G	A	5727.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=64;ExcessHet=3.0103;FS=2.264;MQ=59.94;MQRankSum=0.911;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=0.478;SOR=0.495;VQSLOD=2.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2007,192,0
chr4	47888137	rs11940441	T	A	223.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.36;SOR=3.912;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr4	47898491	rs6447592	C	T	3078.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.350e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=0.00;SOR=0.592;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1298,120,0
chr4	47899792	rs6447593	T	A	279.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=2.584;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr4	47901155	.	CAAAAA	CAA,C	993.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.25;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=1.07;SOR=0.836;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,6:12:99:495,200,162,176,0,139
chr4	47901259	rs4475122	G	A	682.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.63;SOR=1.371;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:699,51,0
chr4	47905158	rs2119204	A	G	1191.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.05;SOR=3.737;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:302,27,0
chr4	47913127	rs4695306	C	T	1069.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.439e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.15;ReadPosRankSum=-1.467e+00;SOR=0.963;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:344,27,0
chr4	47913156	rs66901846	T	G	238.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=2.584;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:255,21,0
chr4	47916346	rs6826122	C	G	2285.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.74;SOR=5.856;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:917,69,0
chr4	47938879	rs17573673	G	A	2098.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=160;ExcessHet=3.0103;FS=1.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.329;SOR=0.852;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,80:160:99:2107,0,1928
chr4	47944029	.	CAA	C,CA	1177.31	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.522;DP=33;ExcessHet=3.0103;FS=4.529;MQ=60.00;MQRankSum=0.00;QD=12.52;ReadPosRankSum=0.230;SOR=1.555;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:7,6,20:33:1:423,248,422,1,0,59
chr4	47944376	rs201657712	GTTT	G	248.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.27;POSITIVE_TRAIN_SITE;QD=31.11;SOR=4.407;VQSLOD=6.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
chr4	47945455	rs6819506	C	G	2813.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.600e-01;DB;DP=23;ExcessHet=3.0103;FS=0.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=0.113;SOR=0.881;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:831,69,0
chr4	47945670	rs11940319	G	T	438.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=2.833;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:455,39,0
chr4	47951945	rs1972883	G	A	7743.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.01;SOR=1.071;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2744,279,0
chr4	47953147	rs3762858	T	C	287.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.41;SOR=2.833;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr4	47953515	rs3845160	A	T	7804.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.136;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1746,162,0
chr4	47954938	rs1972884	A	G	391.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=1.609;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:111,9,0
chr4	47973110	rs7693648	G	A	730.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.34;SOR=0.693;VQSLOD=18.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:89:747,89,0
chr4	48018761	rs77335151	A	G	205.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.83;ReadPosRankSum=0.309;SOR=1.022;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:214,0,157
chr4	48031900	rs12645245	C	T	274.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.49;ReadPosRankSum=0.431;SOR=1.609;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:48031900_C_T:135,9,0:48031900
chr4	48031902	rs56823786	GA	G	200.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.41;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:48031900_C_T:135,9,0:48031900
chr4	48037926	rs13116684	A	G	2582.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735e+00;DB;DP=76;ExcessHet=3.9794;FS=2.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=0.754;SOR=0.610;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,40:76:99:1014,0,966
chr4	48073300	rs875179	G	C	668	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.55;SOR=5.784;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr4	48073501	rs906486	G	T	5894.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.707e+00;DB;DP=79;ExcessHet=3.0103;FS=8.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-1.027e+00;SOR=0.317;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2349,237,0
chr4	48076248	rs2279965	A	G	274.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.82;SOR=4.174;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:291,21,0
chr4	48078593	rs6850108	C	A	3809.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.900e-01;DB;DP=65;ExcessHet=3.9794;FS=0.552;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=-3.310e-01;SOR=0.776;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1943,194,0
chr4	48081896	rs11358014	CA	C	1161.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.123e+00;DB;DP=23;ExcessHet=1.5490;FS=5.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=-1.027e+00;SOR=0.141;VQSLOD=6.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:649,69,0
chr4	48082208	rs2352590	T	C	2647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.76;SOR=3.545;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:479,33,0
chr4	48082374	rs2352591	A	G	160.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=1.609;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr4	48088446	rs6858664	A	G	6412.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.590e-01;DB;DP=75;ExcessHet=3.0103;FS=5.498;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.84;ReadPosRankSum=-3.054e+00;SOR=1.124;VQSLOD=22.06;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2334,225,0
chr4	48092005	rs3840271	AT	A	106.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=2.833;VQSLOD=4.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr4	48143201	rs17470892	T	C	514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=21;ExcessHet=3.9794;FS=1.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=0.653;SOR=1.171;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:218,0,356
chr4	48147309	rs17574371	T	C	1927.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=76;ExcessHet=3.9794;FS=2.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=2.13;SOR=0.937;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1108,0,1106
chr4	48147612	rs2661547	T	G	2194.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=0.725;SOR=0.675;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:533,0,474
chr4	48148435	rs3749503	G	A	1496.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=53;ExcessHet=3.9794;FS=0.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.017;SOR=0.779;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:729,0,602
chr4	48151452	rs1507919	A	T	1195.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.47;ReadPosRankSum=0.652;SOR=1.662;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:109,0,99
chr4	48158524	rs882715	G	A	1925.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.380e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.51;ReadPosRankSum=1.86;SOR=0.826;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:330,0,287
chr4	48165888	rs10541518	CTTA	C	2718.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=26;ExcessHet=3.9794;FS=0.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=0.104;SOR=0.962;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,15:26:99:597,0,508
chr4	48166045	rs7678246	G	C	207.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.37;SOR=3.611;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr4	48169769	rs7689953	A	G	8104.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=127;ExcessHet=3.9794;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=0.379;SOR=0.734;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,53:127:99:1406,0,1884
chr4	48170669	rs2243840	A	G	4088.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582e+00;DB;DP=48;ExcessHet=3.9794;FS=5.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=0.845;SOR=0.410;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,30:48:99:748,0,490
chr4	48486193	rs6845250	C	G	3521.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224e+00;DB;DP=147;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=2.11;SOR=0.670;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,67:147:99:1727,0,2226
chr4	48487297	rs7676578	T	A	200.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=1.38;SOR=1.314;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:141,0,317
chr4	48491010	rs3811759	A	G	116.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.18;SOR=1.609;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
chr4	48492135	rs10755182	T	C	577.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.83;SOR=5.549;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:215,18,0
chr4	48492181	.	C	G	46.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.61;ReadPosRankSum=0.566;SOR=0.223;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:55:55,0,189
chr4	48492188	rs9997932	A	T	956.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.28;SOR=4.712;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:24:355,24,0
chr4	48492213	rs10031120	C	T	287.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.416;DB;DP=13;ExcessHet=3.9794;FS=9.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=1.56;SOR=3.258;VQSLOD=12.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:202,0,188
chr4	48492434	rs10008444	G	C	4867.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.24;SOR=0.761;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1465,144,0
chr4	48492717	.	C	T	632.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DP=45;ExcessHet=3.0103;FS=1.145;MQ=60.00;MQRankSum=0.00;QD=14.05;ReadPosRankSum=1.81;SOR=0.963;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:641,0,517
chr4	48494708	rs35912975	A	T	1347.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.704;SOR=0.629;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:654,0,600
chr4	48496368	rs17472127	A	G	59.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-1.036e+00;SOR=0.061;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,110
chr4	48516970	rs7434721	C	T	2515.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=3.040;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:905,75,0
chr4	48517352	rs7661515	C	A	1002.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.551;DB;DP=11;ExcessHet=3.9794;FS=2.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=0.136;SOR=1.773;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:414,33,0
chr4	48529683	rs11356838	TA	T	2132.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e-01;DB;DP=49;ExcessHet=6.9897;FS=5.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.043;SOR=1.166;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,36:49:98:816,0,98
chr4	48529733	rs4695385	G	A	2576.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.345;DB;DP=30;ExcessHet=3.0103;FS=2.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.84;ReadPosRankSum=-7.740e-01;SOR=1.065;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1094,90,0
chr4	48537603	rs3838234	T	TAC,TACAC	2161.50	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.532;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.72;MQRankSum=0.00;QD=33.77;ReadPosRankSum=1.53;SOR=0.906;VQSLOD=5.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,10,5:17:99:485,127,110,250,0,273
chr4	48546153	rs7683398	T	C	985.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=10;ExcessHet=3.9794;FS=2.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=0.284;SOR=1.739;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:430,30,0
chr4	48547041	rs952289	A	C	3581.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.46;DB;DP=50;ExcessHet=3.9794;FS=2.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.25;ReadPosRankSum=0.083;SOR=1.099;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1929,150,0
chr4	48558882	rs4694898	C	T	1503.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.06;SOR=4.977;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr4	48565101	rs13138269	A	T	1653.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.710;DB;DP=20;ExcessHet=3.9794;FS=1.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=-7.720e-01;SOR=0.508;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:715,60,0
chr4	48567301	rs11439796	G	GA	266.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=58.12;POSITIVE_TRAIN_SITE;QD=29.57;SOR=1.402;VQSLOD=5.33;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:124,12,0
chr4	48577121	rs28558226	C	T	6258.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.578;DB;DP=58;ExcessHet=3.0103;FS=2.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=-3.670e-01;SOR=0.489;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1813,174,0
chr4	48582836	rs4695390	A	T	7436.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=1.478;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1842,168,0
chr4	48583061	.	AT	A	153.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.07;MQRankSum=0.00;QD=5.70;ReadPosRankSum=-1.400e-01;SOR=1.402;VQSLOD=5.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:35:35,0,64
chr4	48584405	rs3107023	T	C	2837.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.142e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=-9.700e-02;SOR=0.680;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1043,84,0
chr4	48588742	rs34558821	C	T	2603.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.920e-01;DB;DP=46;ExcessHet=3.9794;FS=3.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.781;SOR=0.419;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1446,138,0
chr4	48607569	rs1616561	C	T	254	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.894;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=-2.720e-01;SOR=1.270;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr4	48607938	rs2940319	T	C	1383.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.75;ReadPosRankSum=0.963;SOR=0.452;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:574,45,0
chr4	48611149	rs2354348	A	G	1475.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.75;DB;DP=17;ExcessHet=3.9794;FS=7.939;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=0.515;SOR=0.063;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:48611149_A_G:743,51,0:48611149
chr4	48611153	rs776603	A	T	1984.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=0.141;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:48611149_A_G:743,51,0:48611149
chr4	48611639	rs5858122	G	GA	993.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.573;DB;DP=21;ExcessHet=3.9794;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=1.01;SOR=0.956;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,19:21:31:485,31,0
chr4	48621022	rs1702799	G	A	239.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.18;SOR=3.912;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr4	48625213	rs776579	C	A	1021.21	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.132;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.57;ReadPosRankSum=0.619;SOR=0.884;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:302,27,0
chr4	48636555	rs188473280	A	G	252.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.768e+00;DB;DP=25;ExcessHet=3.0103;FS=1.721;MQ=60.00;MQRankSum=0.00;QD=10.09;ReadPosRankSum=-5.720e-01;SOR=0.357;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:261,0,376
chr4	48655635	rs776580	T	A	7583.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=1.402;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1977,197,0
chr4	48655824	rs141132438	AAGCAGC	A	2061.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.354;DB;DP=26;ExcessHet=3.9794;FS=2.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=0.151;SOR=1.046;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:79:1098,79,0
chr4	48834573	rs2304387	T	C	163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.256;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.114;SOR=0.818;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:172,0,265
chr4	48839280	rs34817961	GT	G	340.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=7;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;QD=22.67;ReadPosRankSum=0.210;SOR=0.643;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:186,21,0
chr4	48851937	rs3761729	C	T	1301.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=22;ExcessHet=6.9897;FS=4.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.73;ReadPosRankSum=0.074;SOR=1.480;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,16:22:99:484,0,145
chr4	48851950	rs45463191	A	G	184.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.09;ReadPosRankSum=-5.010e-01;SOR=0.693;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:193,0,530
chr4	48988705	rs2572344	G	A	1181.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.719e+00;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.31;ReadPosRankSum=-1.520e+00;SOR=1.201;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:890,72,0
chr4	48990476	rs10537617	CT	C	1672.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.75;DB;DP=35;ExcessHet=3.9794;FS=0.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-2.320e-01;SOR=0.804;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:35:99:876,104,0
chr4	48994138	rs28678278	G	T	4082.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.844e+00;DB;DP=90;ExcessHet=1.5490;FS=2.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=-1.272e+00;SOR=0.495;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2862,270,0
chr4	49000599	rs146230326	T	A	709.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.790e-01;DB;DP=68;ExcessHet=3.0103;FS=0.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.735;SOR=0.570;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:718,0,1043
chr4	49000850	rs6850199	A	G	34.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=17.05;SOR=2.303;VQSLOD=16.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:46,6,0
chr4	49019232	rs28610228	T	A	890.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=1.536;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:907,90,0
chr4	49063872	rs1051447	C	A	2028.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.032e+00;DB;DP=35;ExcessHet=1.5490;FS=3.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=-7.490e-01;SOR=0.395;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1061,104,0
chr4	49506268	.	TAA	T	4941.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DP=51;ExcessHet=6.9897;FS=0.000;MQ=35.28;MQRankSum=-7.820e-01;QD=27.61;ReadPosRankSum=-1.270e-01;SOR=0.826;VQSLOD=0.628;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,35:51:99:1415,0,551
chr4	52894726	rs225169	C	T	296.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=53.25;MQRankSum=-1.409e+00;NEGATIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=0.100;SOR=1.445;VQSLOD=-1.835e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr4	52927229	rs784944	A	G	704.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.076;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.04;ReadPosRankSum=0.542;SOR=2.737;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:459,33,0
chr4	52928352	.	GTTT	G,GTT	2196.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.550e+00;DP=35;ExcessHet=3.0103;FS=1.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=-9.940e-01;SOR=0.515;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,5,24:35:70:648,489,827,126,0,70
chr4	52936206	rs201895827	TTA	T	99.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=2.833;VQSLOD=6.12;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr4	52938243	rs3860707	T	C	1596.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.95;DB;DP=52;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=0.883;SOR=0.654;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:648,0,779
chr4	52942779	rs55839120	G	T	736.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.473e+00;DB;DP=16;ExcessHet=3.9794;FS=8.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=0.217;SOR=0.065;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:292,0,204
chr4	52945207	rs12641673	G	A	666.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.9794;FS=4.500;MQ=59.57;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=0.992;SOR=2.746;VQSLOD=-1.838e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:99:211,0,102
chr4	52945799	rs7689145	C	T	4285.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.070e+00;DB;DP=42;ExcessHet=3.0103;FS=2.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=0.647;SOR=0.393;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1501,126,0
chr4	52946161	rs7657148	A	G	2634.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.770e-01;DB;DP=23;ExcessHet=3.0103;FS=3.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.33;ReadPosRankSum=1.09;SOR=1.496;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:874,69,0
chr4	52948834	rs35414474	C	G	150.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.130e+00;DB;DP=13;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.56;ReadPosRankSum=-3.440e-01;SOR=0.132;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:159,0,264
chr4	52951213	rs147423128	CTT	C,CT	2062.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.13;DB;DP=25;ExcessHet=3.0103;FS=1.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=0.263;SOR=0.365;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,14,11:25:99:693,251,258,343,0,274
chr4	52960908	rs3214049	T	A	960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=28;ExcessHet=3.9794;FS=2.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=2.28;SOR=0.889;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:525,0,349
chr4	52960968	rs34763682	G	A	448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.395e+00;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-6.690e-01;SOR=0.616;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:457,0,584
chr4	53728524	rs11538878	T	C	233.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=3.9794;FS=1.792;MQ=59.03;MQRankSum=-6.740e-01;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-3.740e-01;SOR=0.307;VQSLOD=0.382;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:45:0|1:53728524_T_C:45,0,510:53728524
chr4	53729126	rs3841109	G	GC	624.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.87;ReadPosRankSum=0.507;SOR=0.760;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,12:18:99:319,0,133
chr4	53729166	rs3811781	T	G	992.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.045e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.163;SOR=0.582;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,18:24:99:580,0,169
chr4	53739856	rs1047959	C	G	64.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.524;SOR=0.446;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,103
chr4	53751932	rs2306600	C	T	1224.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.399;SOR=0.698;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,13:42:99:302,0,751
chr4	53773371	rs2930103	A	C	642.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.15;ReadPosRankSum=0.619;SOR=2.531;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:74,0,64
chr4	54011308	rs7697820	C	T	243.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.85;SOR=2.584;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr4	54011526	rs7675987	A	G	4631.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.919;DB;DP=73;ExcessHet=0.4576;FS=2.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=-8.960e-01;SOR=1.687;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,71:73:99:2001,169,0
chr4	54243905	rs3811782	T	C	3706.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.41;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.87;ReadPosRankSum=1.63;SOR=0.729;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,33:34:66:1367,66,0
chr4	54244321	rs980987	C	T	1132.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.160;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.62;ReadPosRankSum=1.10;SOR=1.085;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:521,39,0
chr4	54245476	rs1471596	A	T	1216.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.28;SOR=5.486;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:389,30,0
chr4	54248276	rs997832	C	A	1137.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.07;SOR=6.804;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:390,30,0
chr4	54248698	rs56998298	A	G	558.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=0.991;SOR=1.136;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:447,33,0
chr4	54250189	rs10012853	T	G	2567.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=3.611;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:826,69,0
chr4	54256478	rs11731499	C	A	890.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.368e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.82;ReadPosRankSum=1.47;SOR=0.793;VQSLOD=6.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:300,24,0
chr4	54257034	rs6847795	A	T	392.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.35;SOR=1.609;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	54280705	.	GA	G	1189.02	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.740e-01;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.23;ReadPosRankSum=1.09;SOR=0.887;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:20:59:496,59,0
chr4	54281075	rs7686876	C	T	134.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-5.240e-01;SOR=0.941;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	54310058	rs28459503	C	A	186.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=-3.850e-01;SOR=0.569;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:118,12,0
chr4	54310188	rs11722866	A	G	3901.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.195e+00;DB;DP=94;ExcessHet=1.5490;FS=1.419;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=-1.590e-01;SOR=0.541;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2768,282,0
chr4	54310281	rs11723755	T	G	6986.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=121;ExcessHet=0.4576;FS=3.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.23;ReadPosRankSum=1.15;SOR=0.527;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,120:121:99:3503,351,0
chr4	54310340	rs59279367	TA	T	2850.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.306e+00;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=1.01;SOR=0.690;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1969,183,0
chr4	54310508	rs55849034	C	T	61.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.524;SOR=0.446;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,113
chr4	54325444	.	CT	C	296.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DP=14;ExcessHet=3.9794;FS=5.951;MQ=60.00;MQRankSum=0.00;QD=9.28;ReadPosRankSum=1.01;SOR=1.893;VQSLOD=4.47;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,3:14:22:22,0,141
chr4	54327235	rs3811785	T	C	1738.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.020e-01;DB;DP=34;ExcessHet=1.5490;FS=4.738;MQ=59.89;MQRankSum=-8.860e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=-5.240e-01;SOR=1.638;VQSLOD=0.525;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1142,102,0
chr4	54327584	rs3765158	A	G	3728.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=40;ExcessHet=3.0103;FS=1.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.13;ReadPosRankSum=0.719;SOR=0.976;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1461,120,0
chr4	54362150	rs6836800	G	A	1690.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=0.299;SOR=1.382;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:619,57,0
chr4	54374598	rs3842589	A	AT	1693.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.46;DB;DP=20;ExcessHet=3.0103;FS=1.787;MQ=60.00;MQRankSum=0.00;QD=25.67;ReadPosRankSum=0.743;SOR=1.302;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,20:20:60:606,60,0
chr4	54876131	rs68107873	AC	A	634.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=16;ExcessHet=6.9897;FS=2.440;MQ=60.00;MQRankSum=0.00;QD=9.20;ReadPosRankSum=-5.000e-02;SOR=1.179;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,11:16:76:208,0,76
chr4	54876132	rs4437313	C	*,A	859.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=12.45;SOR=2.406;VQSLOD=10.33;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,11,5:16:76:692,139,76,268,0,208
chr4	54966667	rs3194383	C	T	22078.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.490e-01;DB;DP=393;ExcessHet=3.9794;FS=0.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=1.14;SOR=0.770;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:189,204:393:99:5317,0,4811
chr4	54966830	rs13144341	G	A	18366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=29.89;SOR=0.717;VQSLOD=4.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,182:182:99:6122,545,0
chr4	54966919	rs1132998	T	C	15109.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.380e-01;DB;DP=268;ExcessHet=3.9794;FS=0.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=1.33;SOR=0.771;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,125:268:99:3304,0,3926
chr4	54967214	rs6554148	C	T	14033.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.32;SOR=6.405;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:4142,321,0
chr4	54967709	rs2278142	C	A	4001.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.913e+00;DB;DP=67;ExcessHet=3.9794;FS=2.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.264;SOR=0.476;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,31:67:99:753,0,1019
chr4	55125058	rs2303430	A	T	4780.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=119;ExcessHet=6.9897;FS=3.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-3.300e-01;SOR=0.916;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,67:119:99:1680,0,1305
chr4	55131001	rs71823029	TA	T	437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003e+00;DB;DP=21;ExcessHet=6.9897;FS=1.363;MQ=59.60;MQRankSum=-8.430e-01;QD=7.68;ReadPosRankSum=-9.070e-01;SOR=0.467;VQSLOD=0.325;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,12:21:99:226,0,133
chr4	55139978	rs1492765	T	C	1404.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=7.112;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:399,30,0
chr4	55140016	rs869978	T	C	446.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.598;DB;DP=6;ExcessHet=3.9794;FS=5.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=0.189;SOR=3.477;VQSLOD=16.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:230,18,0
chr4	55140031	rs1492766	T	G	568.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=4.047;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr4	55141055	rs1873778	A	G	9745.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=0.825;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2159,219,0
chr4	55144390	.	TAAA	T	693.34	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.127e+00;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.73;MQRankSum=3.48;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=-1.265e+00;SOR=0.387;VQSLOD=0.657;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:5:1|1:55144390_TAAA_T:49,5,0:55144390
chr4	55144413	rs4493602	A	C	73.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.47;ReadPosRankSum=0.652;SOR=1.179;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:82:0|1:55144390_TAAA_T:82,0,155:55144390
chr4	55144420	rs1907819	A	G	1243.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.90;ReadPosRankSum=1.72;SOR=0.495;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,5:10:99:1|0:55144390_TAAA_T:184,0,123:55144390
chr4	55144447	rs1907820	T	C	3105.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.89;SOR=1.193;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:55144390_TAAA_T:729,63,0:55144390
chr4	55145258	rs2412556	G	A	1004.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.97;SOR=5.136;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	55146406	rs6148442	T	TTGTAGGTCCCCCAG	2416.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.45;SOR=4.407;VQSLOD=5.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:48:720,48,0
chr4	55151711	rs2412559	C	A	5642.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=60;ExcessHet=3.0103;FS=10.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.06;ReadPosRankSum=0.433;SOR=1.757;VQSLOD=18.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1828,157,0
chr4	55151958	rs3830355	T	TA	5663.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.85;SOR=2.883;VQSLOD=6.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2046,153,0
chr4	55152284	rs4864872	T	G	2648.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=4.804;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:887,69,0
chr4	55153837	rs7695657	A	G	5485.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.27;SOR=2.151;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1745,162,0
chr4	55153921	rs7654385	T	C	1918.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=4.804;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:748,54,0
chr4	55156380	rs4864506	G	A	2598.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=6.244;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:829,68,0
chr4	55156400	rs2276948	A	G	3513.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.87;SOR=4.664;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1012,75,0
chr4	55161254	rs3733540	C	T	10290.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.09;SOR=1.443;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4009,388,0
chr4	55161391	rs7685117	T	C	13304.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=144;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=1.310;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4380,431,0
chr4	55161517	rs7680422	A	G	3929.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.12;SOR=3.098;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1205,102,0
chr4	55523938	rs1005438	G	A	109.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:21:118,0,21
chr4	55524304	rs999020	T	C	6049.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.001e+00;DB;DP=198;ExcessHet=6.9897;FS=1.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-9.340e-01;SOR=0.562;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,103:198:99:2444,0,2374
chr4	55564184	rs3111792	A	G	517.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=5.136;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr4	55573693	rs17240054	G	A	254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=1.01;SOR=1.022;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:263,0,143
chr4	55592325	rs17084694	T	C	80.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.990e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.82;ReadPosRankSum=-3.140e-01;SOR=1.022;VQSLOD=22.53;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:89:89,0,532
chr4	55593464	rs3822214	A	C	1828.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=172;ExcessHet=3.0103;FS=1.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-1.900e-02;SOR=0.602;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,74:172:99:1837,0,2331
chr4	55593865	rs2276949	G	A	125.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-9.360e-01;SOR=1.179;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:134,0,164
chr4	55598211	.	ATT	A	402.06	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.400e-01;DP=16;ExcessHet=6.9897;FS=1.771;MQ=59.36;MQRankSum=-2.530e-01;QD=12.56;ReadPosRankSum=-2.170e-01;SOR=0.426;VQSLOD=0.442;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:16:99:109,0,209
chr4	55599129	rs11935331	T	A	395.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620e-01;DB;DP=45;ExcessHet=3.9794;FS=5.672;MQ=59.75;MQRankSum=0.738;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=5.99;ReadPosRankSum=0.974;SOR=1.724;VQSLOD=0.095;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,10:45:99:227,0,1030
chr4	55599159	rs4864921	G	A	776.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=64;ExcessHet=3.9794;FS=6.476;MQ=59.85;MQRankSum=0.758;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=7.32;ReadPosRankSum=-1.140e-01;SOR=1.445;VQSLOD=0.383;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,17:64:99:350,0,1347
chr4	55599436	rs1008658	T	C	2530.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DB;DP=64;ExcessHet=6.9897;FS=2.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-1.519e+00;SOR=0.465;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,13:64:99:219,0,1605
chr4	55602765	rs3733542	G	C	3633.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=191;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=0.346;SOR=0.659;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:124,67:191:99:1560,0,3252
chr4	55604940	rs17084733	G	A	181.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=2.10;SOR=0.693;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:50:190,0,50
chr4	55946081	rs4421048	A	G	4124.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.752e+00;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=-5.500e-01;SOR=1.017;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,40:41:82:1158,82,0
chr4	55948108	rs2412617	A	G	7307.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=1.577;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2293,201,0
chr4	55954882	rs1458819	T	C	350.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=-9.250e-01;SOR=1.244;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:359,0,194
chr4	55955232	rs1531289	T	C	2465.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060e+00;DB;DP=26;ExcessHet=3.0103;FS=1.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=-3.350e-01;SOR=1.063;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:370,0,349
chr4	55976947	rs5858314	T	TA	716.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=10;ExcessHet=3.9794;FS=9.156;MQ=59.51;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=1.33;SOR=3.549;VQSLOD=3.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:10:77:100,0,77
chr4	55980239	rs7692791	C	T	3976.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DB;DP=89;ExcessHet=6.9897;FS=2.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.048e+00;SOR=0.845;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,40:89:99:1078,0,1284
chr4	55980456	rs2305949	C	T	1705.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=60;ExcessHet=3.9794;FS=3.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.650;SOR=1.077;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:843,0,888
chr4	55991138	rs7666097	T	C	3383.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=5.235;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:944,75,0
chr4	56225353	rs11133375	G	A	545.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.72;ReadPosRankSum=0.431;SOR=2.419;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:69:153,0,69
chr4	56233552	rs6554276	T	G	1044.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.44;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=-3.090e-01;SOR=2.448;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:179,12,0
chr4	56235897	rs3034884	CA	C	299.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.30;ReadPosRankSum=2.36;SOR=0.356;VQSLOD=6.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,2:11:2:2,0,163
chr4	56262374	rs1128141	A	G	10713.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.657e+00;DB;DP=239;ExcessHet=1.5490;FS=3.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=-1.475e+00;SOR=1.023;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:132,107:239:99:2494,0,3427
chr4	56290437	rs6858749	T	C	1562.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.03;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.42;ReadPosRankSum=1.10;SOR=1.877;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:373,0,196
chr4	56290496	rs6828454	C	T	3644.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e+00;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=-1.063e+00;SOR=0.608;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:853,0,542
chr4	56290558	rs11732723	C	T	6726.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=93;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=0.820;SOR=0.670;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,52:93:99:1339,0,1023
chr4	56290573	rs6810483	T	C	7525.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.360e-01;DB;DP=112;ExcessHet=3.9794;FS=1.433;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=1.74;SOR=0.605;VQSLOD=5.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,60:112:99:1495,0,1251
chr4	56290940	rs140080934	T	TAATA	810.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.72;ReadPosRankSum=-5.240e-01;SOR=4.514;VQSLOD=3.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:49:197,0,49
chr4	56291479	rs7677952	C	T	1514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DB;DP=67;ExcessHet=3.9794;FS=3.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.855;SOR=1.060;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,22:67:99:598,0,1274
chr4	56291528	rs7660517	T	C	2069.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=106;ExcessHet=3.9794;FS=1.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=0.552;SOR=0.551;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,38:106:99:822,0,1768
chr4	56291620	rs35154686	CAA	C	3226.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=109;ExcessHet=3.9794;FS=1.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.998;SOR=0.862;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:68,41:109:99:1517,0,3027
chr4	56309992	rs3736544	A	G	1549.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.673;DB;DP=34;ExcessHet=1.5490;FS=7.273;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=-9.020e-01;SOR=1.877;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:345,0,600
chr4	56310621	rs12643926	C	T	457.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.53;ReadPosRankSum=-1.800e-01;SOR=1.911;VQSLOD=4.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:56310621_C_T:114,0,301:56310621
chr4	56310622	rs12647034	A	G	457.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.53;ReadPosRankSum=-1.800e-01;SOR=1.911;VQSLOD=4.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:56310621_C_T:114,0,301:56310621
chr4	56314759	rs146390682	GCA	G	974.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-02;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.69;MQRankSum=0.00;QD=21.65;ReadPosRankSum=0.712;SOR=1.038;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:369,0,262
chr4	56314768	.	CGTGTGTGTGTGT	*,CGTGTGTGTGT	1144.72	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.78;QD=22.45;SOR=8.121;VQSLOD=4.71;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,10,7:17:99:676,177,256,469,0,445
chr4	56315178	rs6811520	T	C	1253.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.83;ReadPosRankSum=-1.080e-01;SOR=1.662;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:231,0,137
chr4	56315338	rs5858334	TA	T	278.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=8;ExcessHet=1.5490;FS=3.468;MQ=60.00;MQRankSum=0.00;QD=17.38;ReadPosRankSum=-1.100e+00;SOR=2.303;VQSLOD=4.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:82:82,0,82
chr4	56319088	rs4864996	A	C	382.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=4.615;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:56319088_A_C:100,9,0:56319088
chr4	56319105	rs2412647	C	T	534.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.68;ReadPosRankSum=1.15;SOR=3.912;VQSLOD=14.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:23:0|1:56319088_A_C:121,0,23:56319088
chr4	56321817	rs1554483	C	G	73.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:81,0,33
chr4	56322244	rs10529254	TG	T	617.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=12;ExcessHet=1.5490;FS=2.764;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=-6.180e-01;SOR=0.148;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,9:12:49:223,0,49
chr4	56329773	rs1522112	T	C	732.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=0.272;SOR=0.725;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:356,0,441
chr4	56337041	rs3805151	T	C	791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=1.45;SOR=0.850;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:417,0,387
chr4	56342091	.	G	C	680.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;DP=53;ExcessHet=3.0103;FS=2.852;MQ=60.00;MQRankSum=0.00;QD=12.83;ReadPosRankSum=0.072;SOR=1.238;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,23:53:99:689,0,856
chr4	56342326	rs9312661	G	A	1699.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=0.434;SOR=0.781;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,30:50:99:910,0,555
chr4	56345236	rs10462032	T	C	408.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=-8.160e-01;SOR=0.892;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:189,0,171
chr4	56345255	rs13102385	T	C	333.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=0.366;SOR=1.329;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,185
chr4	56349190	rs11947623	C	A	369.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=0.00;SOR=2.670;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,73
chr4	56423002	rs71194590	G	GT	59.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.98;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:68:68,0,68
chr4	56428820	rs2279458	C	T	1400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.334;SOR=0.668;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:686,0,452
chr4	56435849	rs28445925	T	C	244.38	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.15;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:60:141,0,60
chr4	56447146	rs34437483	GA	G	824.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=9;ExcessHet=3.0103;FS=6.134;MQ=60.00;MQRankSum=0.00;QD=22.29;ReadPosRankSum=0.778;SOR=2.517;VQSLOD=4.58;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,9:9:27:281,27,0
chr4	56448235	rs10866425	C	T	328.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=12;ExcessHet=3.9794;FS=7.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.447;SOR=0.048;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:215,0,163
chr4	56465418	rs1387198	T	C	5606.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.530e-01;DB;DP=72;ExcessHet=3.0103;FS=2.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.25;ReadPosRankSum=0.238;SOR=0.507;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2159,214,0
chr4	56471293	rs7681959	A	G	459.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.84;ReadPosRankSum=0.524;SOR=2.303;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	56471551	rs3805382	A	G	1384.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.400e-02;DB;DP=62;ExcessHet=3.9794;FS=0.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.99;ReadPosRankSum=0.107;SOR=0.782;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,25:62:99:582,0,931
chr4	56475551	rs5858340	G	GA	245.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=2.02;SOR=0.859;VQSLOD=6.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:102,0,103
chr4	56496785	rs11935806	A	G	221.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=9;ExcessHet=3.9794;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.04;ReadPosRankSum=-1.400e-01;SOR=2.093;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:161,0,136
chr4	56496816	rs7659330	G	A	689.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=4.407;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:334,27,0
chr4	56502178	rs3792703	G	A	392.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e-01;DB;DP=33;ExcessHet=3.0103;FS=3.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.577;SOR=1.188;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:401,0,443
chr4	56734701	rs3213948	C	T	2227.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293e+00;DB;DP=88;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=0.330;SOR=0.728;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1140,0,1269
chr4	56736699	rs11935692	G	A	218.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-3.190e-01;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:28:173,0,28
chr4	56736794	rs150749988	T	TTTTG	924.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.284e+00;DB;DP=40;ExcessHet=3.0103;FS=1.444;MQ=60.00;MQRankSum=0.00;QD=23.11;ReadPosRankSum=0.746;SOR=0.471;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,24:40:99:933,0,728
chr4	56756201	rs2034296	A	G	110.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:117,0,68
chr4	56758700	rs35351886	T	C	467.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=28;ExcessHet=3.0103;FS=11.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.853;SOR=3.258;VQSLOD=12.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:476,0,305
chr4	56763170	rs10014018	A	G	1160.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.80;ReadPosRankSum=0.427;SOR=0.960;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:86:238,0,86
chr4	56825658	rs34865047	C	CTG	504.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.84;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:18:267,18,0
chr4	56831981	rs376310237	G	A	935.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=87;ExcessHet=3.0103;FS=3.131;MQ=60.00;MQRankSum=0.00;QD=10.75;ReadPosRankSum=-6.600e-02;SOR=1.085;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,32:87:99:944,0,1351
chr4	56835413	rs1811473	C	T	578.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:59:142,0,59
chr4	56840846	rs2290014	A	G	1034.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=1.28;SOR=0.760;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:573,0,360
chr4	56874517	rs3214045	A	C	1278.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=44;ExcessHet=3.9794;FS=1.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=1.40;SOR=0.957;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:566,0,588
chr4	56878193	rs11724411	A	G	627.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.00;SOR=0.752;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:223,0,173
chr4	56884079	rs11934142	T	C	110.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.545;SOR=0.693;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:118,0,140
chr4	57167324	rs74499702	AT	A	1205.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=34;ExcessHet=3.9794;FS=0.899;MQ=60.00;MQRankSum=0.00;QD=14.52;ReadPosRankSum=-3.600e-02;SOR=0.559;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,22:34:99:528,0,240
chr4	57167507	rs58767323	C	G	1976.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.440e-01;DB;DP=57;ExcessHet=3.9794;FS=3.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-1.240e+00;SOR=0.492;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,38:57:99:942,0,398
chr4	57173510	rs34990787	A	C	2199.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.118e+00;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=0.562;SOR=0.796;VQSLOD=6.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1083,96,0
chr4	57175316	rs9996593	G	A	482.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=-1.383e+00;SOR=0.576;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:52:52,0,233
chr4	57176710	rs13123803	G	A	258.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=0.135;SOR=0.412;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:31:31,0,121
chr4	57176832	rs79868722	T	C	511.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=-7.300e-02;SOR=0.507;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:520,0,488
chr4	57176965	rs5858374	T	C	938.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.10;DB;DP=34;ExcessHet=6.9897;FS=21.094;MQ=59.82;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-2.880e-01;SOR=3.209;VQSLOD=-3.861e+00;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,12:34:99:416,0,609
chr4	57179059	rs12331363	G	A	228.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795e+00;DB;DP=13;ExcessHet=3.0103;FS=3.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.425;SOR=0.116;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:92:237,0,92
chr4	57179131	rs12331412	G	T	357.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-5.140e-01;SOR=0.653;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:366,0,327
chr4	57179649	rs6554344	A	T	883.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.700e-02;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.53;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.51;ReadPosRankSum=2.44;SOR=2.093;VQSLOD=1.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:268,21,0
chr4	57180563	rs59615456	G	C	193.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.251e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.44;ReadPosRankSum=1.03;SOR=0.693;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:201,0,557
chr4	57181629	rs61750793	C	T	3120.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384e+00;DB;DP=215;ExcessHet=3.0103;FS=1.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.940;SOR=0.776;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:101,114:215:99:0|1:57181629_C_T:3129,0,2802:57181629
chr4	57181632	rs7672073	G	C	21221.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=214;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=0.725;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,214:214:99:1|1:57181629_C_T:8527,643,0:57181629
chr4	57181995	rs3796547	C	T	2685.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=174;ExcessHet=3.0103;FS=10.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=-3.500e-02;SOR=1.134;VQSLOD=19.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,96:174:99:2694,0,1928
chr4	57182647	rs3822003	G	A	3148.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=254;ExcessHet=3.0103;FS=0.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.66;SOR=0.728;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,126:254:99:3157,0,3104
chr4	57182758	rs28559894	C	T	1723.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=158;ExcessHet=3.0103;FS=6.069;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=0.151;SOR=1.175;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,69:158:99:1732,0,2008
chr4	57182901	rs73159954	A	G	493.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880e-01;DB;DP=26;ExcessHet=3.0103;FS=3.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=0.297;SOR=0.236;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:502,0,236
chr4	57190242	rs2292983	T	C	300.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-2.760e-01;SOR=0.631;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:309,0,528
chr4	57193762	rs6826795	G	A	1360.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.539e+00;DB;DP=9;ExcessHet=3.9794;FS=2.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=0.819;SOR=0.330;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:187,0,149
chr4	57194329	rs11733474	G	T	1619.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.043e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=0.121;SOR=0.562;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:480,0,435
chr4	57215803	rs150162083	G	A	560.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434e+00;DB;DP=59;ExcessHet=3.0103;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=0.024;SOR=0.552;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,21:59:99:569,0,1144
chr4	57221348	rs3796543	T	C	946.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.780e-01;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.024;SOR=0.746;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:955,0,714
chr4	57248716	rs34228795	G	C	253.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.510e-01;DB;DP=53;ExcessHet=3.0103;FS=2.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.78;ReadPosRankSum=0.979;SOR=1.172;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,16:53:99:262,0,893
chr4	57250285	rs34543011	T	C	1008.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DB;DP=100;ExcessHet=3.0103;FS=0.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=-2.100e-02;SOR=0.814;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,44:100:99:1017,0,1418
chr4	57261372	rs34605681	G	GA	1260.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329e+00;DB;DP=42;ExcessHet=1.5490;FS=4.005;MQ=59.95;MQRankSum=0.00;QD=15.19;ReadPosRankSum=-2.250e-01;SOR=0.305;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,18:42:99:334,0,510
chr4	57261840	rs34716907	TA	T	1032.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-01;DB;DP=22;ExcessHet=1.5490;FS=5.070;MQ=60.00;MQRankSum=0.00;QD=21.98;ReadPosRankSum=-6.240e-01;SOR=0.204;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,17:22:49:379,0,49
chr4	57268181	rs372667556	AAAACTTTC	A	741.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DB;DP=50;ExcessHet=3.0103;FS=2.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.066;SOR=1.270;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,20:50:99:750,0,1456
chr4	57269646	rs112538106	A	AAAAG	4019.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DB;DP=51;ExcessHet=3.9794;FS=0.607;MQ=60.00;MQRankSum=0.00;QD=24.66;ReadPosRankSum=9.000e-03;SOR=0.641;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,24:51:99:926,0,1498
chr4	57270197	rs7661712	T	C	1394.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=-3.780e-01;SOR=0.711;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:223,0,223
chr4	57272620	rs2271923	T	C	1402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.918;SOR=0.641;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:601,0,694
chr4	57276619	rs2139512	G	C	700.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=10;ExcessHet=3.9794;FS=6.300;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=0.409;SOR=2.617;VQSLOD=19.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:143,0,172
chr4	57307642	rs1520024	G	A	537.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=5.283;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr4	57308281	rs61580407	C	G	127.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.308;SOR=0.693;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:136,0,187
chr4	57314413	rs28649329	C	T	425.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=-4.160e-01;SOR=0.495;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:434,0,491
chr4	57319694	.	C	CA	39.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DP=5;ExcessHet=3.9794;FS=4.260;MQ=60.00;MQRankSum=0.00;QD=7.95;ReadPosRankSum=0.00;SOR=0.061;VQSLOD=5.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:34:34,0,59
chr4	57325476	rs58975286	A	G	2653.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.894;DB;DP=28;ExcessHet=3.9794;FS=1.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=-9.110e-01;SOR=1.013;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:292,0,370
chr4	57336054	rs33985780	C	CT	937.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.910e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=0.618;SOR=1.101;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:149,0,119
chr4	57340696	rs41476944	G	A	203.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=1.08;SOR=0.141;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:212,0,260
chr4	57349282	rs7700034	A	G	2845.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.11;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.87;ReadPosRankSum=0.452;SOR=1.505;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:359,0,521
chr4	57349699	rs6816218	T	C	755.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.180;SOR=1.244;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:134,0,100
chr4	57356588	rs17086879	A	G	1062.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=1.21;SOR=0.728;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1071,0,639
chr4	57367809	rs76774105	G	A	504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=59;ExcessHet=3.0103;FS=2.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=-1.330e-01;SOR=0.435;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,22:59:99:513,0,894
chr4	57371856	rs79938142	C	G	279.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.27;ReadPosRankSum=-9.880e-01;SOR=1.445;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:288,0,114
chr4	57377377	rs61732641	G	A	623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DB;DP=63;ExcessHet=3.0103;FS=0.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-2.200e+00;SOR=0.957;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,26:63:99:632,0,987
chr4	57397050	rs28550555	A	C	6182.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.670e-01;DB;DP=166;ExcessHet=6.9897;FS=2.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-4.230e-01;SOR=0.650;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,71:166:99:1762,0,2545
chr4	57397082	rs28470886	T	C	5668.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519e+00;DB;DP=148;ExcessHet=6.9897;FS=1.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=0.321;SOR=0.743;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,64:148:99:1635,0,2291
chr4	57397157	rs73818121	G	C	1715.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.330e-01;DB;DP=148;ExcessHet=3.0103;FS=2.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-8.300e-02;SOR=0.701;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,66:148:99:1724,0,2286
chr4	57418498	rs4624716	G	C	104.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:110,0,33
chr4	57425443	rs7677956	G	A	354.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=59.16;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=0.739;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,115
chr4	57425469	.	CAA	C,CA	651.58	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.290;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.61;MQRankSum=0.00;QD=18.10;ReadPosRankSum=-8.610e-01;SOR=2.891;VQSLOD=4.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,5:8:43:184,96,106,66,0,43
chr4	57425520	rs76480778	A	AT	2705.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=29;ExcessHet=3.0103;FS=4.918;MQ=60.00;MQRankSum=0.00;QD=23.13;ReadPosRankSum=0.987;SOR=1.622;VQSLOD=5.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,13:29:99:284,0,371
chr4	57458942	rs6858341	C	G	5028.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=76;ExcessHet=3.9794;FS=6.363;MQ=55.74;MQRankSum=-4.555e+00;NEGATIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=0.202;SOR=1.160;VQSLOD=-1.752e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,43:76:99:1152,0,712
chr4	57516896	rs4371677	G	A	2223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=2.48;SOR=0.640;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,43:78:99:1205,0,823
chr4	57521827	rs4515223	G	A	88.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:94:97,0,94
chr4	57521915	rs4260599	A	G	795.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.861e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-3.680e-01;SOR=0.416;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:416,0,447
chr4	57521972	rs144818228	GGCTCAGCC	G	1505.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.206;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=1.32;SOR=0.662;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:69,41:110:99:1514,0,2773
chr4	57522220	rs4626270	A	G	573.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.276e+00;DB;DP=58;ExcessHet=3.0103;FS=5.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-1.335e+00;SOR=0.160;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,21:58:99:582,0,1259
chr4	57523684	rs7664589	C	T	109.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,111
chr4	57523869	rs7693834	T	C	1350.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.820e-01;DB;DP=55;ExcessHet=3.9794;FS=2.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.440;SOR=0.487;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,30:55:99:664,0,631
chr4	57524124	rs6857396	T	C	60.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=0.431;SOR=0.307;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,153
chr4	57777945	rs3000	C	T	246.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=0.253;SOR=0.569;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:157,0,23
chr4	57785786	rs10866440	A	T	438.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219e+00;DB;DP=10;ExcessHet=3.9794;FS=3.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=0.253;SOR=2.584;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:53:290,0,53
chr4	57793751	rs1105434	G	A	238.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.41;ReadPosRankSum=0.824;SOR=0.470;VQSLOD=22.62;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:22:75:75,0,472
chr4	57843320	rs4865167	A	G	16575.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.19;SOR=0.939;VQSLOD=19.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,172:172:99:5344,516,0
chr4	57843863	rs1713997	G	C	421.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.268e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.802;SOR=0.495;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:188,0,215
chr4	57845269	rs13133792	G	T	362.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.550e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.742;SOR=0.664;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:371,0,607
chr4	57861046	rs7659855	A	G	618.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.560e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.063;SOR=0.544;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:627,0,497
chr4	57861096	rs71889795	GA	G	197.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.16;ReadPosRankSum=0.992;SOR=0.368;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:57861096_GA_G:109,0,106:57861096
chr4	57861117	rs1713951	G	A	1117.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.53;ReadPosRankSum=0.524;SOR=2.368;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:57861096_GA_G:109,0,106:57861096
chr4	57861358	rs2293175	C	T	565.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210e-01;DB;DP=17;ExcessHet=3.9794;FS=2.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=1.25;SOR=0.346;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:182,0,325
chr4	57871748	rs71657247	C	CT	4272.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DB;DP=75;ExcessHet=3.9794;FS=0.000;MQ=59.88;MQRankSum=1.04;QD=18.90;ReadPosRankSum=0.036;SOR=0.658;VQSLOD=0.659;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,35:75:99:680,0,772
chr4	57876955	rs1718878	G	A	290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=-5.940e-01;SOR=0.473;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:299,0,342
chr4	57881715	rs1713982	G	A	538.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414e+00;DB;DP=41;ExcessHet=3.0103;FS=1.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-8.160e-01;SOR=0.941;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:547,0,351
chr4	57883175	rs1718866	G	C	3326.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.998e+00;DB;DP=27;ExcessHet=3.0103;FS=5.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.18;ReadPosRankSum=0.802;SOR=0.216;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:327,0,486
chr4	57886914	rs17087382	A	G	98.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=0.241;SOR=1.022;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:107,0,182
chr4	57886946	rs1718831	T	G	292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=-7.360e-01;SOR=2.030;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:301,0,232
chr4	57888510	rs1718830	T	C	595.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.835e+00;DB;DP=41;ExcessHet=3.0103;FS=1.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-8.960e-01;SOR=0.465;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:604,0,437
chr4	57889288	rs7440152	A	G	140.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-7.990e-01;SOR=0.551;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:149,0,221
chr4	57889332	rs1718862	G	A	2658.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.067e+00;DB;DP=22;ExcessHet=3.0103;FS=2.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.28;ReadPosRankSum=-4.340e-01;SOR=1.906;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:243,0,407
chr4	57889677	rs1056364	C	T	10337.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360e-01;DB;DP=92;ExcessHet=3.0103;FS=3.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.94;ReadPosRankSum=2.23;SOR=0.450;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,49:92:99:1264,0,1138
chr4	57890497	rs112938173	A	ATACT	462.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.11;ReadPosRankSum=1.38;SOR=2.833;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:78:78,0,117
chr4	57891239	rs6843644	G	A	684.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=28;ExcessHet=3.0103;FS=10.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=1.30;SOR=3.417;VQSLOD=12.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:693,0,268
chr4	57896699	rs1277307	G	T	4062.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.284e+00;DB;DP=26;ExcessHet=3.0103;FS=5.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=-1.550e-01;SOR=0.192;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:355,0,363
chr4	57897570	rs12621	G	T	408.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.494e+00;DB;DP=35;ExcessHet=3.0103;FS=1.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-1.707e+00;SOR=0.399;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,19:35:99:417,0,455
chr4	57906986	rs3755906	A	T	1255.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=46;ExcessHet=3.9794;FS=0.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=1.43;SOR=0.810;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:647,0,654
chr4	57976720	rs11573018	C	T	71.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=35.80;SOR=0.693;VQSLOD=17.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	62382943	rs335311	A	G	2017.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=62;ExcessHet=6.9897;FS=3.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=-1.070e+00;SOR=1.044;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,18:62:99:517,0,1259
chr4	62383315	rs335312	G	C	1242.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.969;DB;DP=25;ExcessHet=6.9897;FS=2.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.621;SOR=0.428;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:393,0,342
chr4	62445190	rs73215849	G	C	914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.160e-01;DB;DP=83;ExcessHet=3.0103;FS=4.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.018;SOR=0.313;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,36:83:99:923,0,1296
chr4	62445246	rs10018746	T	C	7853.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DB;DP=131;ExcessHet=3.9794;FS=2.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=0.755;SOR=0.896;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,74:131:99:1916,0,1381
chr4	62449316	rs3075153	GTA	G	6072.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.156;DB;DP=40;ExcessHet=3.0103;FS=0.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.00;ReadPosRankSum=1.60;SOR=0.587;VQSLOD=6.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1780,121,0
chr4	62453209	rs2172802	A	G	1987.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;DB;DP=30;ExcessHet=3.9794;FS=3.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.34;ReadPosRankSum=-6.070e-01;SOR=1.440;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:542,0,339
chr4	62453273	rs41278567	A	G	241.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=-9.040e-01;SOR=0.836;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:250,0,176
chr4	62542879	rs1391319	G	C	2981.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=1.609;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:640,57,0
chr4	62542957	rs4860425	C	A	3526.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.061e+00;DB;DP=52;ExcessHet=3.9794;FS=1.349;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.93;ReadPosRankSum=1.96;SOR=0.826;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1665,156,0
chr4	62598689	rs10434219	C	T	6244.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=0.837;VQSLOD=17.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2558,254,0
chr4	62599289	rs9312082	G	A	2990.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.23;SOR=3.153;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1256,111,0
chr4	62758251	rs7691112	A	G	1116.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.24;SOR=5.136;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
chr4	62758799	rs111255800	G	GTCTC	887.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.803e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.14;ReadPosRankSum=-1.026e+00;SOR=3.014;VQSLOD=4.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:667,45,0
chr4	62758826	rs201781138	CTTCT	C	668.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.847;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.45;ReadPosRankSum=1.07;SOR=2.531;VQSLOD=5.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:487,33,0
chr4	62775479	rs59884714	ATGTG	A	208.12	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.92;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=6.58;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:14:1|1:62775479_ATGTG_A:145,14,0:62775479
chr4	62775487	.	G	A	128.84	PASS	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.77;SOR=3.611;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:14:1|1:62775479_ATGTG_A:145,14,0:62775479
chr4	62800554	rs2305339	G	A	4098.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.311;DB;DP=78;ExcessHet=3.9794;FS=0.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=1.08;SOR=0.766;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2182,231,0
chr4	62800728	rs734644	T	C	2758.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.77;DB;DP=41;ExcessHet=3.9794;FS=2.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=2.07;SOR=0.457;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1343,123,0
chr4	62845388	rs1397547	G	C	7562.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=1.319;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2239,210,0
chr4	62845490	rs1397548	A	G	2773.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.000e-03;DB;DP=66;ExcessHet=1.5490;FS=2.385;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.10;ReadPosRankSum=0.531;SOR=0.960;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2035,198,0
chr4	65142710	rs1483713	C	T	2266.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-01;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=-1.483e+00;SOR=0.819;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:285,0,502
chr4	65142835	rs1483712	G	T	1636.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.540e-01;DB;DP=21;ExcessHet=1.5490;FS=2.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-3.120e-01;SOR=1.122;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:118,0,432
chr4	65145955	rs1483711	T	G	9013.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=1.321;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,55:55:99:1|1:65145955_T_G:2466,169,0:65145955
chr4	65145966	rs5858871	T	TAA	10211.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.72;SOR=1.343;VQSLOD=5.60;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,60:60:99:1|1:65145955_T_G:2653,181,0:65145955
chr4	65146700	rs10012755	A	G	5816.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=1.453;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1530,143,0
chr4	65146711	rs1483709	T	C	6035.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.10;SOR=1.362;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1551,149,0
chr4	65146978	rs10000773	T	A	1331.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.46;SOR=1.244;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr4	65147404	rs10001161	T	C	2517.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=4.909;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:662,48,0
chr4	65165661	rs11935568	G	A	5473.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=2.016;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1705,162,0
chr4	65165849	rs13139627	G	A	2722.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=34;ExcessHet=1.5490;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=1.04;SOR=0.724;VQSLOD=6.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,19:34:99:514,0,406
chr4	65165909	rs13121693	T	A	678.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.224e+00;DB;DP=12;ExcessHet=3.9794;FS=3.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=-1.188e+00;SOR=0.175;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:249,0,179
chr4	65180308	rs35642943	GGTGTGTGT	G	2127.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=20;ExcessHet=3.0103;FS=1.576;MQ=60.00;MQRankSum=0.00;QD=33.24;ReadPosRankSum=-1.900e-01;SOR=1.211;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,11:20:99:380,0,304
chr4	65240805	rs6551827	A	T	883.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.98;SOR=2.303;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:268,27,0
chr4	65240822	rs7683730	A	G	365.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=-3.610e-01;SOR=1.179;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:66:196,0,66
chr4	65240967	rs72614757	A	T	736.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=-1.841e+00;SOR=0.836;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:57:308,0,57
chr4	66189753	rs111537275	C	CT	348.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.097;DB;DP=23;ExcessHet=3.0103;FS=9.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=1.51;SOR=0.027;VQSLOD=4.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:357,0,204
chr4	66197804	rs7349683	C	T	2195.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DB;DP=86;ExcessHet=3.9794;FS=1.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=0.013;SOR=0.830;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,36:86:99:835,0,1258
chr4	66214043	rs2290254	G	A	1702.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;DB;DP=35;ExcessHet=1.5490;FS=3.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=-1.331e+00;SOR=1.225;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,14:35:99:364,0,533
chr4	66216856	rs141580850	A	AT	42.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:50:50,0,50
chr4	66218728	rs3792649	C	T	3027.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.716;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=0.851;SOR=0.684;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1330,126,0
chr4	66233029	rs2198104	A	G	2072.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=38;ExcessHet=3.9794;FS=1.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=-6.940e-01;SOR=0.998;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:588,0,610
chr4	66280171	rs2305351	C	T	704.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-3.760e-01;SOR=0.811;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:713,0,626
chr4	66286088	rs6551921	G	A	2345.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=29.13;SOR=4.479;VQSLOD=5.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:776,63,0
chr4	66286100	rs6551922	T	C	2600.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=26.58;SOR=2.964;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:762,66,0
chr4	66286113	rs138755728	G	GA	276.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.61;MQRankSum=1.00;QD=9.21;ReadPosRankSum=-3.120e-01;SOR=0.846;VQSLOD=0.454;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,14:30:99:285,0,361
chr4	66286414	rs6551923	T	C	1957.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.46;SOR=6.358;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:375,27,0
chr4	66468046	rs5858973	TA	T	1545.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=3.788;VQSLOD=6.40;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,15:15:45:459,45,0
chr4	66508839	rs4301162	C	T	4917.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=4.014;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1584,123,0
chr4	66509194	rs4343775	T	C	2272.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=28;ExcessHet=3.9794;FS=0.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=0.102;SOR=0.880;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,8:28:99:193,0,525
chr4	66535284	rs55860557	G	A	2006.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.311;DB;DP=79;ExcessHet=6.9897;FS=3.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-4.150e-01;SOR=0.951;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,35:79:99:622,0,1071
chr4	68202021	rs141055456	TAAGA	T	2406.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=18;ExcessHet=3.0103;FS=5.445;MQ=60.00;MQRankSum=0.00;QD=30.33;ReadPosRankSum=-2.000e-01;SOR=0.193;VQSLOD=4.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:54:810,54,0
chr4	68202069	rs141405547	CAAGAAAGCAAGAAAGCAAGA	C	1962.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.91;SOR=2.531;VQSLOD=3.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:72:1054,72,0
chr4	68214260	rs7659344	C	G	679.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.94;SOR=5.670;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr4	68214270	.	G	GAGGAAGGAAGGA	1188.09	PASS	AC=2;AF=1.00;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.07;QD=28.58;SOR=6.593;VQSLOD=5.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:30:447,30,0
chr4	68357814	rs1497430	A	G	950.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.69;ReadPosRankSum=0.674;SOR=2.753;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:75,0,70
chr4	68358331	rs2254659	G	A	533.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.06;SOR=1.765;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	68360955	rs2646282	A	G	5666.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670e-01;DB;DP=77;ExcessHet=3.0103;FS=1.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=-5.750e-01;SOR=0.778;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,34:77:99:739,0,1011
chr4	68361129	rs2646285	G	T	476.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=0.135;SOR=2.584;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:177,0,101
chr4	68374378	rs355515	T	C	1354.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.336e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=2.29;SOR=2.303;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:115,0,400
chr4	68374597	rs1056789	C	T	7282.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=65;ExcessHet=3.0103;FS=2.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-3.347e+00;SOR=0.492;VQSLOD=21.57;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:28,37:65:99:988,0,704
chr4	68376708	rs190255	T	C	3869.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.465e+00;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=-2.267e+00;SOR=0.787;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,31:55:99:710,0,626
chr4	68380215	rs11250	G	A	4192.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.134;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.53;ReadPosRankSum=-1.367e+00;SOR=0.813;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:392,0,560
chr4	68384008	rs355510	C	T	3010.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=29;ExcessHet=3.0103;FS=1.045;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-2.200e-02;SOR=0.941;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:278,0,396
chr4	68384222	rs355509	C	T	3193.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=-4.600e-01;SOR=0.645;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:338,0,378
chr4	68384861	rs355507	G	T	1147.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=-2.853e+00;SOR=0.900;VQSLOD=21.90;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:99:165,0,182
chr4	68396525	rs355477	G	C	3560.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DB;DP=28;ExcessHet=3.0103;FS=1.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=0.221;SOR=0.922;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:263,0,549
chr4	68416639	rs145950187	GTTGTTTTGTTTTGTT	G,GTTGTTTTGTT	1969.21	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=24.78;SOR=7.743;VQSLOD=6.89;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,5,6:11:99:433,252,278,180,0,162
chr4	68424378	rs144504386	CTG	C	41.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712e+00;DB;DP=47;ExcessHet=3.0103;FS=2.384;MQ=60.00;MQRankSum=0.00;QD=0.88;ReadPosRankSum=-8.630e-01;SOR=0.143;VQSLOD=4.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:42,5:47:50:50,0,1457
chr4	68424646	.	G	A	1044.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DP=67;ExcessHet=3.0103;FS=1.046;MQ=60.00;MQRankSum=0.00;QD=15.59;ReadPosRankSum=1.42;SOR=0.909;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,36:67:99:1053,0,820
chr4	68436883	rs13111555	T	C	5006.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=0.729;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2211,225,0
chr4	68436975	rs116421847	T	C	516.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=42;ExcessHet=3.0103;FS=1.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-2.270e-01;SOR=1.022;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:525,0,591
chr4	68437133	rs13112251	T	G	60.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.24;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:69,0,35
chr4	68442968	rs11556614	A	G	1378.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.385e+00;DB;DP=99;ExcessHet=3.0103;FS=5.121;MQ=59.91;MQRankSum=-8.380e-01;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=0.464;SOR=1.085;VQSLOD=2.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,57:99:99:1387,0,1014
chr4	68447200	rs2242331	A	G	835.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880e-01;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=-9.430e-01;SOR=0.631;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,36:71:99:844,0,860
chr4	68447249	rs2242330	A	G	765.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=40;ExcessHet=3.9794;FS=3.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.56;ReadPosRankSum=0.953;SOR=1.345;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:504,0,580
chr4	68447352	rs2242329	A	G	525.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.66;SOR=5.421;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr4	68449269	rs144427229	G	GT	276.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.82;MQRankSum=0.969;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-2.440e-01;SOR=0.821;VQSLOD=1.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:285,0,377
chr4	68458937	rs3816821	G	C	1290.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=0.148;SOR=0.672;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,18:43:99:529,0,704
chr4	68489007	rs3830312	C	CA	769.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DB;DP=32;ExcessHet=3.9794;FS=1.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-2.220e-01;SOR=0.904;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,13:32:99:281,0,473
chr4	68490044	rs10454252	C	T	2098.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.722e+00;DB;DP=43;ExcessHet=6.9897;FS=1.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-4.130e-01;SOR=0.546;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:510,0,668
chr4	68490122	rs12331690	G	A	409.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.200;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:173,0,153
chr4	68490593	rs10010078	A	C	928.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.640e-01;DB;DP=17;ExcessHet=6.9897;FS=6.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.00;SOR=0.176;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:318,0,156
chr4	68496080	rs354866	G	A	6558.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=2.114;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2092,194,0
chr4	68497389	rs72642357	T	A	1321.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=0.680;SOR=0.765;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,28:46:99:793,0,429
chr4	68497597	rs77075932	C	A	1061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.045;DB;DP=30;ExcessHet=3.9794;FS=3.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.087;SOR=0.368;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,21:30:99:634,0,194
chr4	68499724	rs1484184	C	A	268.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=1.15;SOR=2.093;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:26:74,0,26
chr4	68500171	rs10008910	A	G	1549.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=57;ExcessHet=3.9794;FS=1.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=1.03;SOR=0.865;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,31:57:99:803,0,649
chr4	68504951	rs3806809	T	C	346.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=-6.740e-01;SOR=0.527;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:355,0,151
chr4	68510597	rs143223029	GA	G	136.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.15;ReadPosRankSum=-7.510e-01;SOR=1.402;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:59:145,0,59
chr4	68512252	rs17633426	T	C	262.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-3.890e-01;SOR=0.446;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:104,0,111
chr4	68515054	rs6840867	A	G	237.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=0.431;SOR=1.270;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:111,0,64
chr4	68515155	rs354872	T	C	124.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=1.609;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	68534392	rs10010188	C	T	2537.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099e+00;DB;DP=100;ExcessHet=3.9794;FS=4.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-3.880e-01;SOR=1.022;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,52:100:99:1291,0,1199
chr4	68544318	rs28483797	C	T	1680.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DB;DP=39;ExcessHet=6.9897;FS=7.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.451;SOR=1.343;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:496,0,517
chr4	68547157	rs200361645	A	AT	118.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.88;ReadPosRankSum=0.876;SOR=0.399;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:69:69,0,72
chr4	68547809	rs34482936	A	ATAC	2244.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=40;ExcessHet=6.9897;FS=4.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.634;SOR=1.123;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,21:40:99:825,0,999
chr4	68562130	rs143326263	CAT	C	422.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.38;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,111
chr4	68562176	rs10660788	T	TACAC	1965.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;DB;DP=24;ExcessHet=6.9897;FS=5.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=-7.100e-02;SOR=1.758;VQSLOD=6.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,9:24:99:366,0,639
chr4	68566689	rs78578320	G	A	3496.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=187;ExcessHet=3.9794;FS=1.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.36;ReadPosRankSum=0.159;SOR=0.836;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,78:187:99:1589,0,2766
chr4	68566891	rs34378415	TG	T	3104.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.570e-01;DB;DP=63;ExcessHet=6.9897;FS=11.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=-3.270e-01;SOR=1.382;VQSLOD=3.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,35:63:99:890,0,679
chr4	68567025	rs28653581	T	G	2480.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=65;ExcessHet=3.9794;FS=12.183;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=1.64;SOR=1.534;VQSLOD=16.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,38:65:99:1250,0,748
chr4	68586267	rs17635222	G	C	2615.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.510e-01;DB;DP=108;ExcessHet=3.9794;FS=1.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=0.736;SOR=0.858;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,47:108:99:1095,0,1539
chr4	68700956	rs6824984	A	G	1369.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.870e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=2.44;SOR=0.793;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:68700956_A_G:260,0,128:68700956
chr4	68777054	rs12646286	C	T	754.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-02;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-8.620e-01;SOR=0.711;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,30:51:99:763,0,493
chr4	68780253	rs1371933	G	A	2816.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.197e+00;DB;DP=50;ExcessHet=1.5490;FS=13.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=1.09;SOR=0.063;VQSLOD=13.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1647,149,0
chr4	68780399	rs1371932	A	G	5981.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.781e+00;DB;DP=125;ExcessHet=1.5490;FS=0.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.829;SOR=0.642;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3665,372,0
chr4	68780512	rs10025303	C	A	2443.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.551e+00;DB;DP=45;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=0.077;SOR=0.824;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1483,135,0
chr4	68784774	rs353163	T	C	4771.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.592e+00;DB;DP=101;ExcessHet=1.5490;FS=1.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.853;SOR=0.883;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:2996,302,0
chr4	68788694	rs353159	G	A	1331.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.670e-01;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=0.406;SOR=0.608;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:794,63,0
chr4	68788719	rs2119382	T	C	606.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.509e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.59;ReadPosRankSum=0.00;SOR=1.893;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:379,33,0
chr4	68789693	rs149179048	GT	G	443.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.450e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=1.17;SOR=0.430;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,14:24:99:452,0,302
chr4	68789778	rs6839279	G	T	833.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.616e+00;DB;DP=68;ExcessHet=3.0103;FS=3.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-2.760e-01;SOR=0.394;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,35:68:99:842,0,870
chr4	68795815	rs17578509	A	G	449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.475e+00;DB;DP=59;ExcessHet=3.0103;FS=7.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=0.202;SOR=0.367;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,23:59:99:458,0,1018
chr4	68812283	rs11930532	C	T	1870.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=0.796;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1887,176,0
chr4	68812444	rs34591422	T	TAA	270.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.78;SOR=4.407;VQSLOD=3.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:287,24,0
chr4	68829207	rs6552134	G	A	741.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.65;SOR=3.611;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:758,57,0
chr4	68904233	rs6552140	C	G	920.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=56.37;QD=32.88;SOR=1.179;VQSLOD=1.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:438,39,0
chr4	68904637	rs6552141	A	C	2218.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=0.4576;FS=0.000;MQ=45.82;POSITIVE_TRAIN_SITE;QD=34.66;SOR=0.756;VQSLOD=-2.703e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2235,192,0
chr4	68904834	rs9999589	T	G	1335.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=59.85;POSITIVE_TRAIN_SITE;QD=26.53;SOR=1.040;VQSLOD=3.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1352,114,0
chr4	68919617	rs10018943	G	A	1668.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=1.140;VQSLOD=18.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1685,171,0
chr4	68928740	rs1837215	G	A	3192.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=0.979;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3209,303,0
chr4	68934252	rs1079449	A	C	242.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.06;SOR=3.912;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:259,18,0
chr4	68934306	rs10004522	G	A	654.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=4.294;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:671,51,0
chr4	68939390	rs55649925	C	CG	207.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=21;ExcessHet=3.0103;FS=7.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=-1.636e+00;SOR=2.517;VQSLOD=4.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,9:21:99:216,0,311
chr4	68956422	rs57121360	T	A	805.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.510e+00;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-1.595e+00;SOR=0.610;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,32:63:99:814,0,833
chr4	68956498	rs13115830	C	T	3603.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=2.326;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1013,84,0
chr4	68995529	rs10030708	C	T	1073.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135e+00;DB;DP=80;ExcessHet=3.0103;FS=0.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=1.73;SOR=0.559;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,44:80:99:1082,0,901
chr4	69057073	rs4860284	G	A	3162.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.21;SOR=0.883;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3179,269,0
chr4	69078113	rs4463136	T	C	1964.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=1.033;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1981,198,0
chr4	69083563	rs10008636	C	T	1422.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.02;SOR=1.112;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1439,146,0
chr4	69083869	rs34548520	G	GA	216.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.03;SOR=2.833;VQSLOD=4.33;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:233,24,0
chr4	69094265	rs7434397	G	A	192.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.49;SOR=3.611;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr4	69094507	rs2319797	T	A	3075.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.74;SOR=0.750;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3092,320,0
chr4	69094575	rs2319796	T	G	6009.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.34;SOR=2.107;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1937,165,0
chr4	69094926	rs35036454	TTAAA	T	1063.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=2.925;VQSLOD=5.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1080,72,0
chr4	69095197	rs12331141	T	C	2544.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=0.876;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2561,242,0
chr4	69095554	rs12331361	G	A	68.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.42;SOR=2.303;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	69096756	rs141488566	ATTTCC	A	5229.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=27.26;SOR=3.500;VQSLOD=6.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1516,105,0
chr4	69096810	rs10024748	G	T	2256.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=1.362;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2273,212,0
chr4	69097150	rs5859125	TA	T	6585.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=2.067;VQSLOD=6.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1906,184,0
chr4	69111560	rs115033337	T	C	482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.096e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=1.44;SOR=0.793;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,22:51:99:491,0,790
chr4	69111692	rs9312193	G	A	355.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=2.494;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:372,33,0
chr4	69181899	rs72599795	C	CAG	1456.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.062;DB;DP=20;ExcessHet=1.5490;FS=5.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=-1.450e+00;SOR=2.412;VQSLOD=5.77;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,20:20:60:900,60,0
chr4	69203551	rs10213623	A	T	7174.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.33;SOR=2.682;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2111,190,0
chr4	69203646	rs72651910	A	G	239.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=17;ExcessHet=3.0103;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-4.220e-01;SOR=0.148;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:248,0,316
chr4	69215034	rs7666993	A	G	131.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=3.258;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:74,6,0
chr4	69215349	rs7667575	A	G	1691.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.33;ReadPosRankSum=-1.800e+00;SOR=2.876;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1065,78,0
chr4	69332537	rs2278922	G	A	653.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031e+00;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.76;ReadPosRankSum=1.44;SOR=0.724;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:198,0,256
chr4	69334413	rs34243356	C	A	627.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.412e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=0.618;SOR=1.302;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:251,18,0
chr4	69340500	rs2603187	A	G	2538.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.893;DB;DP=79;ExcessHet=3.9794;FS=1.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-5.150e-01;SOR=0.588;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,39:79:99:888,0,1007
chr4	69341826	rs2603183	C	T	308.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.87;SOR=4.407;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr4	69342169	rs983745	G	C	3854.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=160;ExcessHet=3.9794;FS=2.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.89;SOR=0.836;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,74:160:99:1859,0,2112
chr4	69342267	rs2708698	G	A	6591.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=57;ExcessHet=3.0103;FS=3.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.98;ReadPosRankSum=-1.144e+00;SOR=2.482;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1936,171,0
chr4	69343287	rs976002	A	G	6202.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.859;DB;DP=150;ExcessHet=6.9897;FS=0.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=0.147;SOR=0.777;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,71:150:99:1625,0,1707
chr4	69343353	rs1026341	A	G	8711.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.867;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=0.977;SOR=0.684;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3163,303,0
chr4	69343543	rs1026340	C	A	471.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=5.136;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	69344404	rs2708691	T	C	503.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.48;ReadPosRankSum=0.319;SOR=1.863;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	69344733	rs2603180	G	T	4232.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.664e+00;DB;DP=52;ExcessHet=3.0103;FS=0.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=1.16;SOR=0.819;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1738,155,0
chr4	69344883	rs2603179	C	T	768.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.75;ReadPosRankSum=-3.030e-01;SOR=2.215;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:340,24,0
chr4	69362301	rs2278921	T	G	1734.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=-3.470e-01;SOR=0.616;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:422,0,233
chr4	69362690	rs2278919	A	G	158.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-1.282e+00;SOR=0.693;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,108
chr4	69403812	rs7693677	C	T	736.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.87;SOR=5.892;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:69403812_C_T:180,12,0:69403812
chr4	69403830	rs7671342	A	G	225.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-6.190e-01;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:69403812_C_T:180,12,0:69403812
chr4	69416556	rs13102139	T	C	2182.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.880e-01;DB;DP=31;ExcessHet=1.5490;FS=5.735;MQ=49.63;MQRankSum=-2.865e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=-1.357e+00;SOR=0.352;VQSLOD=-7.011e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1015,93,0
chr4	69417886	rs4860964	G	A	1066.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.72;SOR=5.211;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr4	69431097	rs6856641	A	T	232.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.42;SOR=3.912;VQSLOD=18.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr4	69433279	rs7436338	A	G	1344.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=6.994;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr4	69433293	rs62317000	A	C	695.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.63;ReadPosRankSum=-1.410e+00;SOR=3.352;VQSLOD=17.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:212,18,0
chr4	69433714	rs34664906	C	T	5944.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=32.31;SOR=0.783;VQSLOD=2.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1823,177,0
chr4	69434217	rs28672900	G	A	21300.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=58.16;POSITIVE_TRAIN_SITE;QD=29.34;SOR=1.338;VQSLOD=3.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4654,466,0
chr4	69434400	rs62317003	C	T	1609.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=54.71;QD=34.38;SOR=7.378;VQSLOD=4.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:329,24,0
chr4	69512654	rs3100	G	A	680.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.25;ReadPosRankSum=1.28;SOR=3.500;VQSLOD=15.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr4	69512847	rs4148269	T	G	10569.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=136;ExcessHet=3.0103;FS=1.543;MQ=59.66;MQRankSum=-9.440e-01;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-6.920e-01;SOR=0.537;VQSLOD=0.548;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4390,407,0
chr4	69681675	rs294776	A	T	17597.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=160;ExcessHet=3.0103;FS=0.000;MQ=55.57;POSITIVE_TRAIN_SITE;QD=33.14;SOR=2.083;VQSLOD=3.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,160:160:99:5007,479,0
chr4	69682471	rs294777	A	G	8339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=1.619;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2642,257,0
chr4	69682555	rs294778	G	A	2928.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.87;SOR=4.977;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:59:744,59,0
chr4	69682629	rs2926036	A	G	947.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.70;POSITIVE_TRAIN_SITE;QD=28.89;SOR=6.439;VQSLOD=4.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr4	69683953	rs835310	G	C	11105.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=32.00;SOR=0.783;VQSLOD=4.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2846,269,0
chr4	69684121	rs844342	G	T	3058.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.02;SOR=5.031;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:876,66,0
chr4	69687964	rs861340	G	A	7267.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.30;SOR=1.763;VQSLOD=4.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1969,191,0
chr4	69687987	rs2942857	C	A	9119.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=57.87;POSITIVE_TRAIN_SITE;QD=32.45;SOR=1.644;VQSLOD=4.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2485,231,0
chr4	69795397	rs3749513	G	A	491.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=-6.740e-01;SOR=1.739;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,64
chr4	69795626	rs13128286	C	T	5228.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=0.917;SOR=0.641;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,35:67:99:868,0,725
chr4	69795871	rs3749511	G	C	844.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-7.120e-01;SOR=1.911;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:197,0,125
chr4	69796240	rs3828503	G	C	1085.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DB;DP=90;ExcessHet=3.0103;FS=4.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.567;SOR=1.258;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,41:90:99:1094,0,1260
chr4	69796548	rs2017125	G	A	3342.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.560e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=1.04;SOR=0.551;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:391,0,246
chr4	69796838	rs3966087	G	A	5012.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=57;ExcessHet=3.0103;FS=2.453;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=1.66;SOR=0.987;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,21:57:99:529,0,822
chr4	69798112	rs10024664	G	A	1072.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.55;ReadPosRankSum=1.98;SOR=0.818;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:28:28,0,196
chr4	69798670	rs9996467	T	C	665.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.70;ReadPosRankSum=-1.282e+00;SOR=3.816;VQSLOD=15.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:129,0,63
chr4	69808895	rs13148603	A	T	5374.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.163e+00;DB;DP=55;ExcessHet=3.0103;FS=2.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=-2.030e-01;SOR=0.979;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,14:55:99:253,0,1133
chr4	69810923	rs10000598	A	C	1323.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.52;ReadPosRankSum=0.640;SOR=2.780;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:159,0,295
chr4	69870460	rs201102731	A	AT	1879.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.100e-02;DB;DP=31;ExcessHet=6.9897;FS=1.510;MQ=59.68;MQRankSum=-5.690e-01;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=0.137;SOR=1.179;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,19:31:99:434,0,144
chr4	69875627	rs2331627	G	A	1018.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=37;ExcessHet=3.9794;FS=0.836;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.244;SOR=0.582;VQSLOD=6.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,17:37:99:433,0,558
chr4	69879567	rs111617434	A	C	65.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:74,0,32
chr4	69879718	rs2292524	A	G	2272.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.688e+00;DB;DP=44;ExcessHet=1.5490;FS=3.913;MQ=54.62;MQRankSum=4.25;NEGATIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.251;SOR=0.391;VQSLOD=-2.652e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1295,131,0
chr4	69879878	.	G	GA	448.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-01;DP=66;ExcessHet=3.0103;FS=0.985;MQ=60.00;MQRankSum=0.00;QD=6.79;ReadPosRankSum=-1.494e+00;SOR=0.542;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,23:66:99:457,0,1010
chr4	69883728	rs146475092	AC	A	527.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=33;ExcessHet=3.0103;FS=7.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=1.48;SOR=2.459;VQSLOD=5.06;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,17:33:99:536,0,495
chr4	69883901	rs115791839	T	A	1360.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=108;ExcessHet=3.0103;FS=9.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-1.005e+00;SOR=0.863;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,50:108:99:1369,0,1550
chr4	69884211	.	G	A	329.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.394e+00;DP=26;ExcessHet=3.0103;FS=9.997;MQ=60.00;MQRankSum=0.00;QD=12.66;ReadPosRankSum=-1.161e+00;SOR=0.028;VQSLOD=17.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:338,0,388
chr4	69885241	rs61385958	T	C	152.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.086e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.851;SOR=0.368;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:161,0,283
chr4	69886151	rs11730623	A	T	7362.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.340e+00;DB;DP=155;ExcessHet=1.5490;FS=11.387;MQ=56.88;MQRankSum=-2.728e+00;NEGATIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=1.40;SOR=0.220;VQSLOD=-1.914e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:5217,465,0
chr4	70066030	.	AT	A	345.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.17;ReadPosRankSum=-3.120e-01;SOR=1.306;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,5:24:68:68,0,220
chr4	70074244	rs184843752	G	A	383.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.440e-01;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=58.80;MQRankSum=0.282;POSITIVE_TRAIN_SITE;QD=6.39;ReadPosRankSum=-5.570e-01;SOR=0.754;VQSLOD=0.229;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,18:60:99:392,0,1172
chr4	70079838	rs4694697	T	C	3119.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=113;ExcessHet=3.9794;FS=9.893;MQ=59.43;MQRankSum=-3.480e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.678;SOR=1.247;VQSLOD=0.234;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:55,58:113:99:1491,0,1473
chr4	70146080	rs13124875	T	C	3900.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.49;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=59.91;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.51;ReadPosRankSum=2.49;SOR=2.594;VQSLOD=0.128;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,22:48:99:794,0,873
chr4	70146230	rs13139691	G	A	17456.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.410e-01;DB;DP=395;ExcessHet=1.5490;FS=0.000;MQ=59.70;MQRankSum=-6.360e-01;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=1.22;SOR=0.704;VQSLOD=0.654;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:205,190:395:99:4636,0,5150
chr4	70146704	rs7689398	G	A	3771.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=134;ExcessHet=3.9794;FS=1.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=1.48;SOR=0.835;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,66:134:99:1718,0,1664
chr4	70152685	rs4386668	C	G	803.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-5.540e-01;SOR=0.809;VQSLOD=5.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:302,0,534
chr4	70155633	rs4694712	C	T	460.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=0.282;SOR=0.990;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:22:199,0,22
chr4	70155650	rs4694713	T	A	499.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=-2.100e-01;SOR=1.863;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:150,0,23
chr4	70156313	rs4235127	T	A	2223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.455;DB;DP=61;ExcessHet=3.9794;FS=0.698;MQ=54.84;MQRankSum=-4.715e+00;NEGATIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=1.71;SOR=0.804;VQSLOD=-4.206e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,34:61:99:984,0,751
chr4	70160277	rs6843900	T	G	2026.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=56.99;MQRankSum=3.10;NEGATIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=0.601;SOR=0.643;VQSLOD=-2.431e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,32:59:99:892,0,762
chr4	70160309	rs6828191	C	G	2630.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.286;DB;DP=79;ExcessHet=3.9794;FS=3.981;MQ=56.08;MQRankSum=5.26;QD=15.94;ReadPosRankSum=0.904;SOR=0.432;VQSLOD=-2.850e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,42:79:99:1190,0,990
chr4	70257509	rs35280872	T	C	104.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=18;ExcessHet=3.9794;FS=2.466;MQ=39.12;MQRankSum=-1.498e+00;QD=2.48;ReadPosRankSum=0.044;SOR=1.501;VQSLOD=-5.134e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:98:98,0,406
chr4	70267879	rs78718654	A	C	62.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=62;ExcessHet=3.9794;FS=3.079;MQ=56.60;MQRankSum=-5.755e+00;QD=0.34;ReadPosRankSum=-6.710e-01;SOR=1.031;VQSLOD=-4.882e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:55,7:62:2:2,0,1676
chr4	70275332	rs7435529	A	G	2758.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.056e+00;DB;DP=23;ExcessHet=3.0103;FS=2.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-1.490e+00;SOR=1.260;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:844,69,0
chr4	70276753	rs4694728	G	A	7606.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.799e+00;DB;DP=84;ExcessHet=3.0103;FS=1.288;MQ=55.48;MQRankSum=-9.420e-01;NEGATIVE_TRAIN_SITE;QD=25.96;ReadPosRankSum=1.86;SOR=0.561;VQSLOD=-2.726e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2526,252,0
chr4	70283908	rs2642841	T	A	3758.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.32;SOR=2.487;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1012,84,0
chr4	70284728	rs2642840	T	C	13960.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=53.51;POSITIVE_TRAIN_SITE;QD=33.16;SOR=1.732;VQSLOD=2.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3772,333,0
chr4	70284745	rs2642839	T	C	12091.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.59;DB;DP=134;ExcessHet=3.0103;FS=0.664;MQ=53.06;MQRankSum=4.25;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.63;ReadPosRankSum=2.51;SOR=0.781;VQSLOD=-2.629e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:6,128:134:99:4190,254,0
chr4	70284846	rs2736516	C	A	15546.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=207;ExcessHet=3.0103;FS=1.526;MQ=55.03;MQRankSum=0.562;NEGATIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=0.100;SOR=0.925;VQSLOD=-2.491e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:6,201:207:99:5796,470,0
chr4	70284911	rs2642838	T	A	10995.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.90;DB;DP=145;ExcessHet=3.0103;FS=1.551;MQ=59.80;MQRankSum=-1.113e+00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=-4.210e-01;SOR=0.855;VQSLOD=1.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4586,434,0
chr4	70288388	rs4694211	G	A	801.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.94;SOR=6.091;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr4	70288522	rs2254718	A	G	2746.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579e+00;DB;DP=33;ExcessHet=3.0103;FS=1.057;MQ=59.67;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=0.656;SOR=0.533;VQSLOD=5.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1045,99,0
chr4	70288596	rs2736508	G	A	6385.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=56.81;POSITIVE_TRAIN_SITE;QD=31.93;SOR=1.261;VQSLOD=3.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1922,180,0
chr4	70288954	rs2736507	C	T	3010.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.510e-01;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=47.41;MQRankSum=-1.211e+00;QD=34.21;ReadPosRankSum=-2.080e-01;SOR=0.970;VQSLOD=-3.334e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:788,69,0
chr4	70288981	rs2736505	C	T	2919.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=51.84;MQRankSum=-9.230e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.83;ReadPosRankSum=-1.334e+00;SOR=2.807;VQSLOD=-7.777e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:801,66,0
chr4	70346564	rs13142440	G	T	1157.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=76;ExcessHet=3.0103;FS=3.276;MQ=60.00;MQRankSum=0.00;QD=15.23;ReadPosRankSum=1.36;SOR=1.111;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,31:76:99:0|1:70346564_G_T:1166,0,2556:70346564
chr4	70346565	rs13119049	A	T	1157.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=76;ExcessHet=3.0103;FS=3.276;MQ=60.00;MQRankSum=0.00;QD=15.23;ReadPosRankSum=1.34;SOR=1.111;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,31:76:99:0|1:70346564_G_T:1166,0,2556:70346564
chr4	70346680	rs28419590	G	A	426.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=-1.380e-01;SOR=0.807;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,16:34:99:0|1:70346680_G_A:435,0,457:70346680
chr4	70346711	rs28679647	G	C	3384.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.85;POSITIVE_TRAIN_SITE;QD=30.13;SOR=2.007;VQSLOD=5.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:93:1|1:70346680_G_A:1205,93,0:70346680
chr4	70352164	rs41297427	A	AATTATC	2758.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.565;DB;DP=18;ExcessHet=3.0103;FS=1.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=0.109;SOR=1.460;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,18:18:66:973,66,0
chr4	70352212	rs146944026	ATTTTAT	A	1159.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.240e-01;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=1.29;SOR=0.573;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,30:49:99:1168,0,710
chr4	70355211	rs1845555	T	C	11058.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=0.738;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2856,285,0
chr4	70355380	rs28542932	T	A	2388.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.297;DB;DP=46;ExcessHet=3.9794;FS=4.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=1.34;SOR=1.270;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,19:46:99:507,0,692
chr4	70360752	rs13104687	C	T	784.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.745e+00;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.787e+00;SOR=0.628;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,33:71:99:793,0,1130
chr4	70455478	rs2288741	G	T	3875.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.830e-01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=1.56;SOR=0.772;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1287,114,0
chr4	70461161	rs4148303	C	T	517.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.19;ReadPosRankSum=-3.190e-01;SOR=3.912;VQSLOD=17.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr4	70462042	rs4148301	C	T	1806.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DB;DP=53;ExcessHet=3.9794;FS=4.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=1.15;SOR=1.091;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:691,0,732
chr4	70462250	rs1967984	T	C	703.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.10;DB;DP=13;ExcessHet=3.9794;FS=2.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=0.705;SOR=0.223;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:81:360,0,81
chr4	70462297	rs1967983	G	A	354.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=1.98;SOR=0.317;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:57:153,0,57
chr4	70465153	rs3775782	A	T	2967.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=75;ExcessHet=6.9897;FS=4.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-8.500e-01;SOR=1.015;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,40:75:99:992,0,831
chr4	70505162	rs28404221	G	A	2955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.010e-01;DB;DP=91;ExcessHet=3.9794;FS=1.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=0.738;SOR=0.782;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1315,0,1247
chr4	70513139	rs1347046	C	T	8228.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=0.858;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2158,203,0
chr4	70513551	rs1432330	G	A	332.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=1.58;SOR=0.941;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:95:110,0,95
chr4	70592604	rs11569728	T	A	228.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=3.912;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr4	70620708	rs2134668	G	A	4558.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.000e-01;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=-1.430e+00;SOR=0.716;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2000,156,0
chr4	70707945	rs1220724	A	G	2131.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.077e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.80;ReadPosRankSum=0.347;SOR=3.407;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:462,39,0
chr4	70713520	rs1220702	G	C	1970.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.97;SOR=1.022;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1987,204,0
chr4	70801922	rs2637803	T	C	327.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.13;SOR=1.179;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr4	70803380	rs1220860	T	A	671.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.99;SOR=5.784;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:242,18,0
chr4	70805829	.	TCA	T	1333.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DP=22;ExcessHet=3.9794;FS=1.342;MQ=60.00;MQRankSum=0.00;QD=25.16;ReadPosRankSum=0.761;SOR=0.465;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:70805829_TCA_T:837,66,0:70805829
chr4	70805833	rs201926356	A	T	961.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.293;DB;DP=22;ExcessHet=3.9794;FS=1.342;MQ=60.00;MQRankSum=0.00;QD=18.49;SOR=0.465;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:70805829_TCA_T:837,66,0:70805829
chr4	70808709	rs1220856	A	G	255.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.76;SOR=4.174;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr4	70811806	rs1237375	T	C	2650.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=1.206;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1032,108,0
chr4	70863901	rs17641990	T	C	71.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=2.303;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	70866864	rs33983459	T	TAA	1156.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.74;SOR=6.593;VQSLOD=6.25;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:315,21,0
chr4	70896355	rs13123938	A	G	1442.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=57.58;POSITIVE_TRAIN_SITE;QD=25.64;SOR=7.112;VQSLOD=6.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:554,39,0
chr4	70898953	rs1136515	C	T	8325.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=1.011;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:3806,388,0
chr4	70899037	rs776852	T	A	5748.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=53;ExcessHet=3.0103;FS=7.668;MQ=60.00;MQRankSum=0.00;QD=28.32;ReadPosRankSum=-1.178e+00;SOR=1.478;VQSLOD=19.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1819,159,0
chr4	70899204	rs7668144	G	A	327.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=4.407;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr4	70919081	rs2070719	A	G	1113.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.64;SOR=6.666;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:626,45,0
chr4	70921164	rs2271643	T	C	8564.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.684;DB;DP=86;ExcessHet=3.0103;FS=0.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.81;ReadPosRankSum=-3.170e-01;SOR=0.611;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3919,268,0
chr4	70921165	rs72651134	T	C	3883.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=2.174;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:89:99:3900,267,0
chr4	70921337	rs2271644	G	A	10336.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.215e+00;DB;DP=117;ExcessHet=3.0103;FS=0.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=-5.540e-01;SOR=0.616;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3613,350,0
chr4	70934964	rs4694266	A	G	2077.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.778;DB;DP=25;ExcessHet=3.0103;FS=6.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-1.950e-01;SOR=1.949;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:931,75,0
chr4	70944452	rs1399812	G	A	3575.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.31;SOR=0.868;VQSLOD=18.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1140,117,0
chr4	70947318	rs2063819	C	T	8763.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=1.584;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1941,183,0
chr4	70947376	rs2063820	T	A	2627.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=23;ExcessHet=3.0103;FS=2.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=0.443;SOR=0.468;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:765,69,0
chr4	70948533	rs7675265	T	C	6141.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.77;DB;DP=60;ExcessHet=3.0103;FS=0.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=-1.169e+00;SOR=0.550;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2088,179,0
chr4	70948630	rs7670468	A	G	1657.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-3.150e-01;SOR=3.306;VQSLOD=18.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:516,39,0
chr4	71005401	rs777391	A	G	733	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=5.994;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr4	71008313	rs777398	G	T	6164.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.79;SOR=1.700;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1482,134,0
chr4	71008365	rs115257454	C	G	241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.646e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-1.986e+00;SOR=0.836;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:250,0,228
chr4	71008375	rs777399	T	C	3364.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.63;SOR=3.391;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:529,39,0
chr4	71008528	rs370195839	T	TA	42.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.03;SOR=2.303;VQSLOD=4.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr4	71009033	rs777400	A	G	294.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.335e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=-3.250e-01;SOR=0.269;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	71020205	rs1709273	C	G	4718.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=1.543;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1423,137,0
chr4	71021888	rs1709274	C	T	3854.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.67;SOR=3.111;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:789,69,0
chr4	71021940	rs17148265	T	C	206.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=1.37;SOR=0.399;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:109,0,139
chr4	71024010	rs111347259	T	TACAA	6353.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=2.716;VQSLOD=5.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1665,111,0
chr4	71024099	rs1612460	A	G	896.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230e+00;DB;DP=73;ExcessHet=3.0103;FS=0.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.557;SOR=0.553;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,36:73:99:905,0,1088
chr4	71064567	rs10050001	T	C	440.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.683;SOR=0.560;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:191,0,142
chr4	71065943	rs34093806	GA	G	1724.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=36;ExcessHet=3.9794;FS=3.251;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.451;SOR=1.143;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,18:36:99:371,0,366
chr4	71067317	rs4694273	C	A	2124.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=20;ExcessHet=3.9794;FS=9.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=0.393;SOR=2.027;VQSLOD=18.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:339,0,237
chr4	71114956	rs1048152	G	T	1294.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-02;DB;DP=132;ExcessHet=3.0103;FS=1.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=-5.650e-01;SOR=0.846;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,54:132:99:1303,0,2071
chr4	71201388	rs1351419	C	T	9710.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=0.706;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2771,255,0
chr4	71201943	rs13039	A	G	4605.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=53;ExcessHet=1.5490;FS=7.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=-7.400e-01;SOR=1.429;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,28:53:99:833,0,634
chr4	71227802	rs1842478	A	G	5779.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=92;ExcessHet=1.5490;FS=1.264;MQ=52.15;MQRankSum=5.30;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=0.686;SOR=0.828;VQSLOD=-2.778e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1334,0,1095
chr4	71227998	rs1842477	A	T	3512.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=40;ExcessHet=1.5490;FS=15.321;MQ=59.97;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.78;ReadPosRankSum=-6.640e-01;SOR=2.761;VQSLOD=-5.710e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,21:40:99:0|1:71227998_A_T:686,0,486:71227998
chr4	71228001	rs1842476	G	A	7004.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=30.33;SOR=3.362;VQSLOD=5.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:71227998_A_T:1497,116,0:71227998
chr4	71228116	rs4694295	T	G	103.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:112,0,67
chr4	71232430	rs10024123	T	C	15924.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=1.369;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4774,467,0
chr4	71232701	rs6853742	C	T	9116.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.03;SOR=1.268;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,123:123:99:3984,368,0
chr4	71250308	rs2233586	T	A	9893.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=46.71;POSITIVE_TRAIN_SITE;QD=32.55;SOR=1.386;VQSLOD=-1.298e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2505,237,0
chr4	71250399	rs7676909	A	G	6351.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.450e-01;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=57.28;MQRankSum=-4.460e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.77;ReadPosRankSum=-5.030e-01;SOR=2.858;VQSLOD=0.374;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1659,132,0
chr4	71255370	rs7674958	A	T	7570.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.26;SOR=2.208;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3282,313,0
chr4	71255593	rs2988	G	A	11363.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=161;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=1.245;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:5286,482,0
chr4	71255767	rs3733493	A	G	6291.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.925;DB;DP=91;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.43;ReadPosRankSum=0.663;SOR=0.999;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,89:91:99:2718,223,0
chr4	71265172	rs1844635	A	C	1526.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=3.9794;FS=4.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.19;ReadPosRankSum=0.723;SOR=2.885;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:275,0,164
chr4	71275012	rs1352689	T	C	2091.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.048e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=-2.130e-01;SOR=0.627;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:575,48,0
chr4	71275889	rs3046574	C	CTAAA	1237.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=0.154;SOR=1.225;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,4:14:99:138,0,440
chr4	71346321	rs35218820	CA	C	45.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=-1.036e+00;SOR=0.446;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:54:54,0,85
chr4	71346336	rs998210	T	C	173.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=1.04;SOR=0.892;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:110,0,70
chr4	71384488	rs28674149	C	T	6267.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.396e+00;DB;DP=110;ExcessHet=3.9794;FS=5.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=0.541;SOR=0.437;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,54:110:99:1262,0,1485
chr4	71384579	rs35692424	G	A	1475.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.270e-01;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-7.230e-01;SOR=0.692;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,62:139:99:1484,0,1980
chr4	71384840	rs35026749	G	T	133.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=0.431;SOR=1.329;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:142,0,65
chr4	71388229	rs35391697	A	G	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=0.460;SOR=1.371;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:71388229_A_G:354,0,466:71388229
chr4	71388236	rs3907125	C	G	1282.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=18;ExcessHet=6.9897;FS=1.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=-5.990e-01;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,10:18:99:0|1:71388229_A_G:392,0,463:71388229
chr4	71388262	rs3852096	C	A	264.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=21;ExcessHet=3.0103;FS=1.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.106;SOR=1.508;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:273,0,296
chr4	71388379	rs28754427	A	T	684.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.221;SOR=0.665;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:693,0,831
chr4	71388394	rs4123809	T	G	3181.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=67;ExcessHet=6.9897;FS=2.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=-2.530e-01;SOR=0.554;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,33:67:99:871,0,864
chr4	71389346	rs28444783	C	G	651.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.437;SOR=0.811;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:51:269,0,51
chr4	71390795	rs17733287	C	A	1184.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.87;DB;DP=23;ExcessHet=3.9794;FS=3.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.41;ReadPosRankSum=1.98;SOR=1.678;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:477,0,250
chr4	71390891	rs28714353	T	C	536.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.53;ReadPosRankSum=-6.970e-01;SOR=2.584;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:156,0,107
chr4	71396989	rs17676820	C	T	1171.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e-01;DB;DP=118;ExcessHet=3.0103;FS=5.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=0.216;SOR=1.019;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,53:118:99:1180,0,1578
chr4	71398064	rs3852099	G	A	400.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.140e-01;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-9.040e-01;SOR=0.776;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:409,0,502
chr4	71458285	rs28710288	T	C	410.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.608;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=0.652;SOR=0.784;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:71458285_T_C:108,0,141:71458285
chr4	71458296	rs33910648	GT	G	380.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.63;ReadPosRankSum=-7.120e-01;SOR=0.976;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:99:0|1:71458285_T_C:111,0,104:71458285
chr4	71465061	rs74863297	G	C	171.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:73,0,33
chr4	71467697	rs79200974	T	C	1250.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.928;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=1.81;SOR=0.770;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,46:73:99:1259,0,614
chr4	71468345	rs141384720	CAGG	C	654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=1.83;SOR=0.693;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,17:34:99:663,0,841
chr4	71468583	rs142022847	AT	A	675.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.560e-01;DB;DP=36;ExcessHet=3.0103;FS=5.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=0.241;SOR=0.206;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,25:36:99:684,0,243
chr4	71469529	rs7439194	C	T	202.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=17;ExcessHet=3.0103;FS=6.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=-9.400e-02;SOR=0.053;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:211,0,285
chr4	71469556	rs7439191	C	T	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.861e+00;DB;DP=26;ExcessHet=3.0103;FS=4.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-1.376e+00;SOR=0.174;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,15:26:99:396,0,347
chr4	71469604	rs7439186	C	T	424.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.025e+00;DB;DP=45;ExcessHet=3.0103;FS=2.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=3.12;SOR=0.336;VQSLOD=22.11;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:26,19:45:99:433,0,700
chr4	71469953	rs6422713	C	T	729.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=5.892;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr4	71469988	rs6605353	C	G	170.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=-9.670e-01;SOR=2.303;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:64,0,36
chr4	71521931	.	CA	C	142.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.47;ReadPosRankSum=1.49;SOR=1.148;VQSLOD=5.16;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,4:13:66:0|1:71521931_CA_C:66,0,215:71521931
chr4	71554275	rs3733488	C	T	145.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-9.210e-01;SOR=0.693;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:62:154,0,62
chr4	71689783	rs28526268	G	T	333.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=4.407;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
chr4	71690221	rs13108088	A	G	671.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=4.294;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0
chr4	71690828	rs7661039	A	G	902.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=4.255;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:227,18,0
chr4	71691743	rs6814981	C	T	2957.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=4.407;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:709,57,0
chr4	71692174	rs6849893	G	C	598.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.38;SOR=3.912;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	71697510	rs4694080	T	C	1686.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=6.316;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:352,30,0
chr4	71697864	rs1477883	T	C	1079.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.36;SOR=6.666;VQSLOD=23.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr4	71698183	rs4694081	C	A	5099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=1.747;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1355,128,0
chr4	71704965	rs3775728	C	T	8000.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=1.526;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2779,267,0
chr4	71705153	.	G	A	838.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674e+00;DP=58;ExcessHet=3.0103;FS=3.623;MQ=59.71;MQRankSum=1.18;NEGATIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=0.322;SOR=0.466;VQSLOD=-1.026e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,33:58:99:847,0,696
chr4	71705262	rs6813092	A	G	5750.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.75;SOR=0.876;VQSLOD=18.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2214,192,0
chr4	71767906	rs1871049	T	A	509.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=5.283;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr4	71768079	rs1871048	C	G	7112.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.08;SOR=2.451;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2064,192,0
chr4	71864013	rs6446988	A	G	2008.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=6.518;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:562,45,0
chr4	71864079	rs1580469	A	G	859.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=6.184;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	71888332	rs373938314	C	CT	82.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.19;ReadPosRankSum=0.272;SOR=0.446;VQSLOD=5.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,2:15:4:4,0,261
chr4	71892513	rs1486271	A	T	4195.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.52;SOR=1.384;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:888,93,0
chr4	71894321	rs35880082	C	CTTTT	554.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=1.179;VQSLOD=5.21;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,10:10:30:450,30,0
chr4	71895260	rs4643786	C	T	1283.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=6.994;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:260,21,0
chr4	72120673	rs28499237	A	G	513.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=0.967;SOR=3.767;VQSLOD=15.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr4	72316822	rs10022349	C	T	2944.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=2.670;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:962,84,0
chr4	72352587	.	TAA	T	237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DP=23;ExcessHet=3.0103;FS=2.793;MQ=60.00;MQRankSum=0.00;QD=10.32;ReadPosRankSum=-9.360e-01;SOR=1.828;VQSLOD=5.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,7:23:99:0|1:72352587_TAA_T:246,0,3033:72352587
chr4	72352591	.	A	AGGTT	279.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DP=23;ExcessHet=3.0103;FS=2.793;MQ=60.00;MQRankSum=0.00;QD=12.14;SOR=1.828;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,7:23:99:0|1:72352587_TAA_T:288,0,3030:72352587
chr4	72352594	.	A	G	318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.00;DP=24;ExcessHet=3.0103;FS=2.793;MQ=60.00;MQRankSum=0.00;QD=13.26;ReadPosRankSum=-1.593e+00;SOR=2.030;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,8:24:99:0|1:72352587_TAA_T:327,0,3098:72352587
chr4	72352595	.	C	CTT	318.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DP=25;ExcessHet=3.0103;FS=2.782;MQ=60.00;MQRankSum=0.00;QD=12.73;ReadPosRankSum=-1.282e+00;SOR=1.911;VQSLOD=5.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,8:25:99:0|1:72352587_TAA_T:327,0,3098:72352587
chr4	72352596	rs201950603	C	T	318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.275;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.24;ReadPosRankSum=-1.698e+00;SOR=0.892;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,9:26:99:0|1:72352587_TAA_T:327,0,3098:72352587
chr4	72363545	rs4280704	A	G	55.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,106
chr4	72397710	rs3775162	C	T	1348.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=17;ExcessHet=1.5490;FS=2.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=0.928;SOR=1.473;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:201,0,301
chr4	72397964	rs10446504	T	C	2357.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544e+00;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=-1.980e-01;SOR=0.656;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:420,0,511
chr4	72398084	rs2198447	G	T	240.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=0.126;SOR=1.270;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:22:139,0,22
chr4	72400242	rs12696756	G	T	301.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:105,0,68
chr4	72411967	rs4694097	A	G	2491.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.64;SOR=4.743;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:559,45,0
chr4	72413110	rs1453479	A	G	522.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.76;ReadPosRankSum=1.96;SOR=2.179;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:154,0,28
chr4	72413281	rs2278893	T	C	2204.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DB;DP=75;ExcessHet=3.9794;FS=0.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.370;SOR=0.776;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:846,0,1201
chr4	72413563	rs191588846	G	A	629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=1.57;SOR=1.179;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:638,0,372
chr4	72423624	rs1453474	C	T	11088.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.120e-01;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=1.29;SOR=0.548;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3318,326,0
chr4	72423817	rs1026305	C	G	485.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.23;SOR=5.136;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr4	72425863	rs1453458	C	T	5851.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=1.054;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2044,199,0
chr4	72429371	rs2290399	G	A	381.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.65;SOR=4.977;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:166,15,0
chr4	72429409	rs2290398	A	G	854.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.03;SOR=6.091;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:423,30,0
chr4	72429452	rs2290397	G	A	1763.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=4.712;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:638,45,0
chr4	72432991	rs965606	A	C	2545.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.82;SOR=5.387;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:570,42,0
chr4	72433078	rs965605	A	G	744.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.39;SOR=5.892;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr4	72433759	rs1453453	C	T	1373.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.39;SOR=7.168;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:511,39,0
chr4	72607678	rs2070741	T	G	778.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=47;ExcessHet=3.0103;FS=3.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-5.460e-01;SOR=0.264;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:787,0,644
chr4	72618296	rs9016	T	C	5756.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=0.818;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1684,171,0
chr4	72618323	rs4588	G	T	1467.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=57;ExcessHet=3.9794;FS=5.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-1.705e+00;SOR=0.964;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,18:57:99:349,0,920
chr4	72620865	rs71673486	C	CTATTTATT	1672.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.41;SOR=4.461;VQSLOD=3.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:7:132,7,0
chr4	72622208	rs222034	A	C	505.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=5.283;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:108,9,0
chr4	72622403	rs222033	A	C	8017.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=-5.410e-01;SOR=0.743;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2301,222,0
chr4	72634975	rs222016	G	A	3807.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.973e+00;DB;DP=41;ExcessHet=3.0103;FS=1.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=-6.640e-01;SOR=0.923;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1260,123,0
chr4	72934539	rs9884712	A	C	2218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.98;SOR=3.682;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:410,33,0
chr4	72934555	rs35549647	GT	G	602.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DB;DP=13;ExcessHet=6.9897;FS=1.252;MQ=60.00;MQRankSum=0.00;QD=7.83;ReadPosRankSum=0.159;SOR=0.458;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:57:154,0,57
chr4	72934578	rs11444220	C	CT	3493.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=2.480;VQSLOD=5.90;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:684,66,0
chr4	72934632	rs9884478	C	T	6224.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=1.208;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1339,128,0
chr4	72934968	rs11733448	T	G	808.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.78;SOR=6.273;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr4	73003569	rs11940196	A	G	137.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=-4.640e-01;SOR=0.307;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:52:52,0,214
chr4	73156968	rs16847801	T	G	852.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.120e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=58.57;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-2.810e-01;SOR=1.681;VQSLOD=1.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:439,33,0
chr4	73175093	rs10024487	C	T	6292.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=1.739;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1791,168,0
chr4	73178175	rs150270324	T	C	828.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-01;DB;DP=67;ExcessHet=3.0103;FS=0.922;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.535;SOR=0.855;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,36:67:99:837,0,742
chr4	73178202	rs139379032	T	G	753.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.112;DB;DP=60;ExcessHet=3.0103;FS=2.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.19;SOR=1.098;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,32:60:99:762,0,619
chr4	73280802	rs919981	T	C	1836.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.02;ReadPosRankSum=1.84;SOR=3.098;VQSLOD=18.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:216,0,332
chr4	73280846	rs5859320	ATAAT	A	812.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.66;ReadPosRankSum=0.842;SOR=3.258;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:152,0,149
chr4	73414032	rs11946759	T	C	135.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.06;ReadPosRankSum=1.28;SOR=1.981;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:144,0,25
chr4	73414286	rs788908	C	T	4603.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=1.054;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4620,473,0
chr4	73414730	rs61317550	A	G	154.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.800e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=-1.276e+00;SOR=1.371;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:163,0,228
chr4	73433122	rs33925079	GA	G	4742.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.800e-01;DB;DP=95;ExcessHet=1.5490;FS=1.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=0.206;SOR=0.555;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3390,286,0
chr4	73433315	rs6830556	G	C	6599.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=2.039;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2231,204,0
chr4	73433399	rs6814004	T	A	2776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=4.548;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:73433399_T_A:630,42,0:73433399
chr4	73433400	rs6830744	G	C	2776.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.38;SOR=4.548;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:73433399_T_A:630,42,0:73433399
chr4	73433456	rs6446839	C	T	1062.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=6.518;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr4	73434379	rs5859330	GT	G	4052.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.80;SOR=1.364;VQSLOD=5.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1112,111,0
chr4	73434535	rs34234669	CA	C	345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=8.42;ReadPosRankSum=0.141;SOR=0.209;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,6:22:99:165,0,562
chr4	73615956	rs1350836	C	T	5818.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.234;DB;DP=83;ExcessHet=3.0103;FS=1.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=-3.060e-01;SOR=0.822;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,34:83:99:850,0,1301
chr4	73673070	rs1381252	A	C	804.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.0103;FS=3.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.95;ReadPosRankSum=0.00;SOR=2.584;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:71:139,0,71
chr4	73673596	rs2614328	T	A	2698.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702e+00;DB;DP=27;ExcessHet=3.0103;FS=12.176;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.71;ReadPosRankSum=-7.280e-01;SOR=1.557;VQSLOD=2.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:392,0,422
chr4	73927424	.	CA	C	617.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.120e-01;DP=19;ExcessHet=3.9794;FS=2.585;MQ=58.09;MQRankSum=-3.410e-01;QD=11.65;ReadPosRankSum=0.139;SOR=0.281;VQSLOD=-3.370e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:19:49:145,0,49
chr4	73930552	rs3762883	G	A	1121.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=49;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.26;ReadPosRankSum=1.27;SOR=0.699;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,21:49:99:457,0,619
chr4	73930894	rs201334203	T	G	356.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=17;ExcessHet=6.9897;FS=13.454;MQ=59.28;MQRankSum=0.956;NEGATIVE_TRAIN_SITE;QD=4.01;ReadPosRankSum=-1.870e-01;SOR=2.494;VQSLOD=-2.644e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,7:17:97:97,0,165
chr4	73933603	rs76503090	A	T	471.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.22;SOR=4.977;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:222,18,0
chr4	73933671	rs68113340	ATGTGTG	A,ATG	5313.21	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.781;DB;DP=32;ExcessHet=3.0103;FS=7.436;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=3.057;VQSLOD=5.04;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,23,8:32:99:1269,223,153,716,0,727
chr4	73956736	rs6855349	G	A	6276.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461e+00;DB;DP=154;ExcessHet=1.5490;FS=3.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=1.13;SOR=0.937;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,78:154:99:1987,0,1997
chr4	73984597	.	C	CTT	310.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.973;DP=16;ExcessHet=6.9897;FS=4.877;MQ=59.62;MQRankSum=-4.490e-01;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=0.515;SOR=0.211;VQSLOD=0.155;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,5:16:88:88,0,232
chr4	73988492	rs10050235	A	G	478.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.20;ReadPosRankSum=0.00;SOR=2.448;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:21:189,0,21
chr4	73991006	rs6822576	T	C	4953.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.16;SOR=1.230;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:954,93,0
chr4	74007870	rs12500051	A	G	796.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.46;ReadPosRankSum=-6.310e-01;SOR=1.244;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:228,0,202
chr4	74010555	rs375888439	TA	T	265.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-02;DB;DP=21;ExcessHet=6.9897;FS=2.058;MQ=60.00;MQRankSum=0.00;QD=3.69;ReadPosRankSum=0.179;SOR=0.963;VQSLOD=5.35;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,4:21:43:43,0,328
chr4	74012462	rs13149759	A	T	7826.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=92;ExcessHet=1.5490;FS=4.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=0.972;SOR=1.078;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,39:92:99:1028,0,1274
chr4	74012825	rs79460463	T	C	129.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-1.133e+00;SOR=0.693;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:138,0,211
chr4	74014809	rs1534450	A	C	1811.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DB;DP=38;ExcessHet=1.5490;FS=13.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=0.454;SOR=2.336;VQSLOD=13.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:331,0,611
chr4	74281012	rs6832260	T	A	620.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=0.728;SOR=0.593;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:16:184,0,16
chr4	74282092	rs35807836	A	AT	1305.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.53;ReadPosRankSum=1.34;SOR=0.737;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,6:18:99:120,0,299
chr4	74285239	rs962004	C	T	3702.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=0.850;SOR=0.749;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,31:57:99:889,0,737
chr4	74285552	rs4076	A	G	716.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=14;ExcessHet=3.9794;FS=11.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=1.73;SOR=2.742;VQSLOD=13.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:127,0,297
chr4	74285567	rs962005	C	A	628.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=10;ExcessHet=3.9794;FS=7.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=1.25;SOR=2.115;VQSLOD=19.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:52:52,0,295
chr4	74285758	rs2236766	G	T	1958.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-03;DB;DP=83;ExcessHet=3.9794;FS=6.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-3.580e-01;SOR=1.157;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,31:83:99:757,0,1418
chr4	74285823	rs2236767	G	A	2668.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=102;ExcessHet=3.9794;FS=3.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=1.99;SOR=0.935;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,42:102:99:1014,0,1545
chr4	74301675	rs6834059	C	G	273.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=2.04;SOR=0.752;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:224,0,281
chr4	74302071	rs3796678	T	A	2123.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.464;SOR=0.620;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:418,0,236
chr4	74302151	rs3796677	A	T	285.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=0.842;SOR=1.445;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,146
chr4	74302215	rs3796676	T	A	98.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:58:106,0,58
chr4	74302870	rs16849384	T	C	3291.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;DB;DP=117;ExcessHet=3.9794;FS=7.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=1.93;SOR=0.417;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,60:117:99:1467,0,1358
chr4	74304118	rs6446932	T	A	1360.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.51;SOR=5.670;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:409,33,0
chr4	74306671	rs6857080	A	G	1759.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.05;SOR=4.712;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:427,30,0
chr4	74310844	rs2298839	A	G	3353.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=63;ExcessHet=3.9794;FS=5.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.311;SOR=1.139;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,39:63:99:1000,0,581
chr4	74313010	rs7667243	T	C	204.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.51;POSITIVE_TRAIN_SITE;QD=29.26;SOR=2.584;VQSLOD=4.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:100,9,0
chr4	74313169	rs7667494	T	C	5521.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=1.347;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2075,214,0
chr4	74318177	rs35920062	T	C	806.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.289e+00;DB;DP=58;ExcessHet=3.0103;FS=1.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-1.885e+00;SOR=0.511;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:815,0,659
chr4	74318330	rs4235117	A	G	6600.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=0.980;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1988,204,0
chr4	74318533	rs4235118	T	C	1017.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.24;SOR=5.211;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:183,15,0
chr4	74347297	rs9995810	C	T	575.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=5.549;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr4	74349867	rs11939341	A	G	3995.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DB;DP=64;ExcessHet=3.9794;FS=1.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=0.714;SOR=0.881;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,24:64:99:591,0,1190
chr4	74350157	rs72216263	CTCTTTCTT	C,CTCTT	672.59	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.61;ReadPosRankSum=-1.068e+00;SOR=4.514;VQSLOD=1.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,4:6:71:237,169,161,71,0,73
chr4	74352916	rs2071098	A	G	627.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970e-01;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=0.870;SOR=0.917;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:334,0,388
chr4	74354632	rs13107306	T	C	395.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.00;SOR=1.292;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:173,0,263
chr4	74357851	rs11733262	A	G	876.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273e+00;DB;DP=18;ExcessHet=3.9794;FS=6.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=0.801;SOR=2.608;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:249,0,306
chr4	74361254	rs10212657	T	C	4378.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=74;ExcessHet=3.9794;FS=3.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=0.306;SOR=0.507;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,42:74:99:1085,0,822
chr4	74363282	rs1158101	T	C	444.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-02;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=0.618;SOR=0.859;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:173,0,173
chr4	74364992	rs67050083	CT	C	703.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.770e-01;DB;DP=29;ExcessHet=3.9794;FS=7.142;MQ=59.95;MQRankSum=0.00;QD=12.13;ReadPosRankSum=0.092;SOR=0.267;VQSLOD=4.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,16:29:99:312,0,177
chr4	74367706	rs1159624	C	T	388.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.071e+00;DB;DP=14;ExcessHet=3.9794;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=1.49;SOR=0.153;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:277,0,183
chr4	74447452	rs1247670	C	T	5121.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.978e+00;DB;DP=71;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=0.622;SOR=0.697;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,36:71:99:827,0,929
chr4	74447510	rs1247671	A	C	5920.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=78;ExcessHet=3.9794;FS=12.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-3.000e-03;SOR=0.960;VQSLOD=17.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1017,0,882
chr4	74447800	rs2008288	A	G	382.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=11;ExcessHet=3.9794;FS=3.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.28;ReadPosRankSum=1.46;SOR=0.248;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:140,0,193
chr4	74448078	rs148589925	ATCT	A	163.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=7;ExcessHet=3.9794;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.60;ReadPosRankSum=0.652;SOR=0.160;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,192
chr4	74450830	rs7682201	G	A	572.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.370e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-1.111e+00;SOR=0.258;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:304,0,489
chr4	74451073	rs12507775	A	G	5810.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172e+00;DB;DP=122;ExcessHet=3.9794;FS=1.942;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=0.406;SOR=0.586;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:74,48:122:99:0|1:74451073_A_G:1690,0,3776:74451073
chr4	74451092	rs12508661	T	G	5393.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DB;DP=98;ExcessHet=3.9794;FS=2.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=2.02;SOR=0.540;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,39:98:99:0|1:74451073_A_G:1491,0,3422:74451073
chr4	74453656	rs10019146	G	A	1688.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.328e+00;DB;DP=81;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-9.440e-01;SOR=0.687;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,46:81:99:981,0,783
chr4	74453691	rs10011419	T	C	1347.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DB;DP=52;ExcessHet=3.9794;FS=1.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-1.900e-01;SOR=0.551;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,29:52:99:733,0,550
chr4	74453782	rs10009048	A	G	948.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.50;DB;DP=5;ExcessHet=3.9794;FS=4.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=1.71;SOR=2.833;VQSLOD=19.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:71:71,0,104
chr4	74453827	rs1247661	A	G	742	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=5.892;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	74458987	rs34169741	C	T	633.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.38;ReadPosRankSum=1.28;SOR=0.334;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:31:31,0,141
chr4	74464285	rs10632092	T	TTG	3385.65	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.079e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.64;ReadPosRankSum=0.060;SOR=0.909;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,24:25:39:819,39,0
chr4	74464443	rs11368217	TA	T	3500.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=1.843;VQSLOD=6.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1072,108,0
chr4	74485914	rs1247592	T	C	658.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.84;SOR=2.584;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:286,21,0
chr4	74485985	rs1534642	T	C	884.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=9;ExcessHet=3.9794;FS=10.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=0.934;SOR=4.255;VQSLOD=12.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:62:221,0,62
chr4	74486052	rs1247591	C	G	3059.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=1.337;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:832,78,0
chr4	74486264	rs1247590	G	A	6982.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=0.918;VQSLOD=19.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2474,230,0
chr4	74607514	rs2227541	T	TA	1081.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.780e+00;DB;DP=19;ExcessHet=1.5490;FS=11.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-1.032e+00;SOR=1.944;VQSLOD=3.20;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:607,57,0
chr4	74607868	rs369603475	TA	T	414.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.65;SOR=5.549;VQSLOD=6.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chr4	74711842	rs34821794	C	T	2332.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.52;SOR=0.718;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2349,237,0
chr4	74711941	rs3079474	C	CTTT	280.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=9;ExcessHet=3.9794;FS=3.681;MQ=58.83;MQRankSum=0.282;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=0.894;SOR=0.209;VQSLOD=0.504;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:63:97,0,63
chr4	74713445	rs1951230	C	T	3955.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.70;SOR=7.743;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:894,66,0
chr4	74713950	rs7658970	T	C	2991.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.088e+00;DB;DP=35;ExcessHet=3.0103;FS=2.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=-7.840e-01;SOR=0.449;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1224,105,0
chr4	74714098	rs2367288	G	A	7618.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.060e+00;DB;DP=106;ExcessHet=3.0103;FS=0.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=-1.612e+00;SOR=0.734;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3196,317,0
chr4	74718845	rs941757	C	G	2077.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.500e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=-5.890e-01;SOR=4.615;VQSLOD=13.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:912,63,0
chr4	74718941	rs941758	C	A	7035.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.288;DB;DP=99;ExcessHet=3.0103;FS=0.640;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=-6.060e-01;SOR=0.783;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2991,295,0
chr4	74719925	rs11723868	G	A	6432.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=2.253;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1802,170,0
chr4	74735150	rs11547681	G	T	3779.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=85;ExcessHet=1.5490;FS=1.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=0.899;SOR=0.575;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,83:85:99:2474,206,0
chr4	74735244	rs2071425	A	G	5571.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=120;ExcessHet=1.5490;FS=5.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=0.786;SOR=0.992;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,118:120:99:3582,325,0
chr4	74847292	rs352007	G	C	18662.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=189;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.26;SOR=1.386;VQSLOD=4.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,187:189:99:5624,561,0
chr4	74853605	rs16850295	A	G	934.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=96;ExcessHet=3.0103;FS=0.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.73;ReadPosRankSum=-1.250e-01;SOR=0.537;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,36:96:99:943,0,1640
chr4	74863997	rs425535	T	C	28308.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=275;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=1.046;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,275:275:99:9288,825,0
chr4	74864550	rs352046	G	C	696.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.17;SOR=2.636;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:239,21,0
chr4	74903134	rs370655	T	C	1518.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.04;DB;DP=13;ExcessHet=3.9794;FS=6.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.50;ReadPosRankSum=1.40;SOR=2.120;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:522,39,0
chr4	74903165	rs10658871	C	CTT	380.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=0.319;SOR=3.098;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:4:12:106,12,0
chr4	75023609	rs6840665	T	C	27458.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.73;SOR=0.951;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,278:278:99:8828,833,0
chr4	75023709	rs2289443	C	T	29130.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.873;DB;DP=337;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=-3.900e-02;POSITIVE_TRAIN_SITE;QD=31.12;ReadPosRankSum=-1.067e+00;SOR=1.068;VQSLOD=1.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,335:337:99:9904,958,0
chr4	75040404	rs61744957	G	A	452.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e-02;DB;DP=43;ExcessHet=3.0103;FS=2.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.816;SOR=0.380;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:461,0,575
chr4	75040944	rs13116686	T	G	9881.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=89;ExcessHet=3.0103;FS=3.127;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.72;ReadPosRankSum=-1.371e+00;SOR=0.319;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2813,267,0
chr4	75046310	rs4694183	A	C	4074.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.84;SOR=3.056;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1032,87,0
chr4	75046372	rs561583	A	G	7363.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.378;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1720,174,0
chr4	75046465	rs561844	C	G	11524.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=0.731;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3115,305,0
chr4	75067285	rs56797702	AT	A	603.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.56;ReadPosRankSum=0.674;SOR=3.912;VQSLOD=4.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:35:71,0,35
chr4	75107255	rs4694184	T	C	584.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.55;SOR=0.874;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:323,36,0
chr4	75231244	rs1460006	C	G	2496.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.405e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=0.994;SOR=0.687;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:960,72,0
chr4	75231382	rs11410236	C	CT	136.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=1.71;SOR=0.180;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:10:82,0,10
chr4	75245343	rs7660209	T	A	3585.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=4.317;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:715,60,0
chr4	75246617	rs4694187	A	T	3250.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.23;DB;DP=33;ExcessHet=3.0103;FS=2.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=1.42;SOR=1.751;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1296,99,0
chr4	75248434	rs2367707	A	G	5577.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;DB;DP=73;ExcessHet=3.0103;FS=0.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=0.487;SOR=0.770;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2231,219,0
chr4	75248505	rs78803121	G	T	684.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940e-01;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-1.312e+00;SOR=0.607;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,25:59:99:693,0,974
chr4	75248544	rs2367708	C	T	3680.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.053e+00;DB;DP=44;ExcessHet=3.0103;FS=10.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=-3.790e-01;SOR=1.628;VQSLOD=18.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1472,132,0
chr4	75248685	rs2367709	G	A	460.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=3.611;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:261,21,0
chr4	75673363	rs4585380	G	A	2934.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=104;ExcessHet=3.9794;FS=1.589;MQ=59.95;MQRankSum=1.08;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=1.66;SOR=0.590;VQSLOD=2.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,55:104:99:1415,0,1123
chr4	75673455	rs7699847	T	A	2782.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=55;ExcessHet=6.9897;FS=11.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-9.760e-01;SOR=1.509;VQSLOD=17.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,31:55:99:786,0,627
chr4	75673533	rs62316277	T	C	747.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.666e+00;DB;DP=21;ExcessHet=3.9794;FS=4.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=0.870;SOR=2.546;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:426,0,227
chr4	75675667	rs7673066	A	G	425.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=-5.390e-01;SOR=0.507;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,2:12:50:50,0,336
chr4	75675706	rs35926103	A	G	424.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=21;ExcessHet=3.9794;FS=10.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.07;SOR=0.029;VQSLOD=18.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:157,0,460
chr4	75675841	rs11938093	A	T	1913.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=95;ExcessHet=3.9794;FS=3.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.848;SOR=0.967;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,39:95:99:792,0,1502
chr4	75719761	rs2278862	T	C	834.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=0.540;SOR=0.788;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:308,0,168
chr4	75937971	rs3822109	C	T	9533.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=205;ExcessHet=1.5490;FS=1.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.92;ReadPosRankSum=0.898;SOR=0.534;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,205:205:99:6895,615,0
chr4	75938179	rs3775527	G	A	10040.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=217;ExcessHet=1.5490;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=1.36;SOR=0.736;VQSLOD=6.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,215:217:99:6612,615,0
chr4	75938236	rs1062293	A	G	7288.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.42;DB;DP=144;ExcessHet=1.5490;FS=3.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=0.166;SOR=0.928;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,144:144:99:4786,432,0
chr4	75938373	rs919052	C	G	3496.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.490e-01;DB;DP=70;ExcessHet=1.5490;FS=1.215;MQ=59.99;MQRankSum=0.887;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=-5.470e-01;SOR=0.576;VQSLOD=2.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2195,210,0
chr4	76415985	rs6833496	G	A	1511.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.767;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=0.888;SOR=0.604;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:526,0,309
chr4	76416779	rs2045863	G	A	2607.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.670e-01;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-5.580e-01;SOR=0.660;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,36:58:99:818,0,562
chr4	76446921	rs112121251	G	GATT	3829.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e-01;DB;DP=46;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.80;ReadPosRankSum=0.540;SOR=0.719;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,26:46:99:1003,0,857
chr4	76467668	rs35304407	C	T	699.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.178e+00;DB;DP=61;ExcessHet=3.0103;FS=2.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-5.100e-02;SOR=1.092;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:708,0,863
chr4	76474483	rs13115648	T	C	433.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.410e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=0.394;SOR=0.518;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr4	76474540	rs13130544	G	A	1656.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.526e+00;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=0.515;SOR=0.902;VQSLOD=6.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,18:23:99:694,0,136
chr4	76474792	rs11322239	CT	C	2912.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-02;DB;DP=115;ExcessHet=6.9897;FS=2.179;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.947;SOR=0.869;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,55:115:99:1167,0,841
chr4	76474866	rs6535531	T	C	2626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=53;ExcessHet=6.9897;FS=3.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=-2.580e-01;SOR=0.412;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:914,0,753
chr4	76474892	rs6535532	A	T	1554.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DB;DP=35;ExcessHet=6.9897;FS=3.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.050;SOR=0.119;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:524,0,629
chr4	76474986	rs7690878	T	C	359.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.189;SOR=0.610;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:197,0,103
chr4	76489345	rs2306175	C	T	6302.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=143;ExcessHet=1.5490;FS=0.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.028;SOR=0.780;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,143:143:99:4492,427,0
chr4	76525648	rs67518748	AT	A	233.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.94;SOR=2.093;VQSLOD=6.03;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:112,12,0
chr4	76528896	.	C	CA	218.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DP=6;ExcessHet=6.9897;FS=3.081;MQ=59.30;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.29;ReadPosRankSum=0.100;SOR=2.066;VQSLOD=6.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:28:95,0,28
chr4	76532514	.	A	C	419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DP=33;ExcessHet=3.0103;FS=5.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.796;SOR=1.739;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:428,0,470
chr4	76550861	rs1464071	T	C	223.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.00;SOR=2.303;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr4	76587405	rs33965828	AT	A	216.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.05;ReadPosRankSum=0.370;SOR=0.693;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:9:41:73,0,41
chr4	76587428	rs13103092	C	T	412.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=58.47;POSITIVE_TRAIN_SITE;QD=34.27;SOR=4.804;VQSLOD=4.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr4	76649924	rs2280095	C	G	3243.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=1.496;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1474,144,0
chr4	76650176	rs7657871	C	G	2612.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=1.432;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:910,84,0
chr4	76670180	rs3853184	T	C	6250.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.003e+00;DB;DP=94;ExcessHet=0.4576;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.20;ReadPosRankSum=0.553;SOR=0.380;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,93:94:99:2738,241,0
chr4	76676464	rs7665517	T	G	514.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.45;SOR=3.767;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:305,21,0
chr4	76678576	rs4859552	A	G	4027.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=1.630;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2052,176,0
chr4	76681582	rs4859408	A	G	519.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.27;SOR=5.136;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:224,15,0
chr4	76688430	rs324717	C	A	587.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.01;SOR=5.549;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:244,18,0
chr4	76691828	rs324715	G	C	3856.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.51;SOR=2.054;VQSLOD=19.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1431,108,0
chr4	76695810	rs10588680	TTCTC	T	4341.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.28;SOR=1.921;VQSLOD=5.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,46:46:99:2070,139,0
chr4	76711200	rs67037358	TA	T	352.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=58.85;POSITIVE_TRAIN_SITE;QD=27.12;SOR=3.767;VQSLOD=5.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:112,12,0
chr4	76720885	rs13119659	T	C	8384.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.27;SOR=1.609;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3904,395,0
chr4	76721414	rs13145290	C	G	2847.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.37;SOR=3.383;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1224,96,0
chr4	76721459	rs4859409	G	A	4269.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.059e+00;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.40;ReadPosRankSum=1.71;SOR=0.947;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1705,158,0
chr4	76721671	.	C	CT,CTT	1561.21	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.399;DP=33;ExcessHet=3.0103;FS=1.610;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-5.530e-01;SOR=0.953;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,8,12:33:99:681,333,311,104,0,115
chr4	76721705	rs2271472	C	G	2802.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=59.65;POSITIVE_TRAIN_SITE;QD=31.36;SOR=1.308;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:1047,83,0
chr4	76722041	rs324727	G	A	1441.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=3.383;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr4	76722353	rs324726	G	A	8006.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=0.716;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2411,245,0
chr4	76722422	rs13133472	T	C	4096.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=1.629;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2001,177,0
chr4	76725245	rs381067	G	T	2254.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=3.804;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:698,57,0
chr4	76726528	rs11733253	T	C	884.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=2.737;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:76726528_T_C:405,30,0:76726528
chr4	76726539	rs11728073	C	T	726.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=3.258;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:24:1|1:76726528_T_C:340,24,0:76726528
chr4	76727576	rs11312984	GT	G	1574.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.72;SOR=2.628;VQSLOD=6.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:72:722,72,0
chr4	76729892	rs10683487	A	ATTT	379.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.54;SOR=1.802;VQSLOD=4.74;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0
chr4	76730004	rs324687	G	C	1614.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.80;SOR=4.317;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:429,36,0
chr4	76730061	rs324688	T	A	3416.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.83;SOR=1.779;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:970,84,0
chr4	76730258	rs324690	T	C	3487.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.19;SOR=1.802;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1004,90,0
chr4	76730309	rs11272122	CTTTAGATTACTTACTAGCCGG	C	2130.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.74;SOR=3.080;VQSLOD=6.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:34:492,34,0
chr4	76730373	rs324691	T	C	1183.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.08;SOR=4.479;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr4	76734176	rs324698	T	G	818.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=4.514;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:262,18,0
chr4	76734343	rs17284996	C	T	3620.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.17;SOR=1.078;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1540,155,0
chr4	76785716	rs1394913	C	T	3474.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=1.923;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:76785716_C_T:1039,72,0:76785716
chr4	76785723	rs1394914	A	G	3425.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.27;SOR=2.179;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:76785716_C_T:990,66,0:76785716
chr4	76785736	rs1394915	T	C	2331.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.75;SOR=2.694;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:622,45,0
chr4	76787673	rs7654738	T	C	5153.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.49;SOR=2.352;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1574,135,0
chr4	76788692	rs2135234	C	T	1135.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=3.477;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:308,30,0
chr4	76793228	rs1394916	A	G	9890.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=32.32;SOR=1.279;VQSLOD=5.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2758,258,0
chr4	76794345	rs6858658	T	G	7042.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=33.22;SOR=1.279;VQSLOD=5.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2258,207,0
chr4	76797179	rs2056021	A	G	523.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=5.421;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:230,18,0
chr4	76797337	rs146584748	A	AAGAG	3515.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=1.387;VQSLOD=6.01;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,25:27:81:1145,81,0
chr4	76797950	rs13132709	G	A	315.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=1.00;SOR=0.941;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:244,0,338
chr4	76800729	rs13130621	A	G	713.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=1.179;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr4	76804067	rs4859564	A	G	4316.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=1.806;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1590,150,0
chr4	76804501	rs4241572	A	C	525.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.80;SOR=3.611;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:76804501_A_C:135,9,0:76804501
chr4	76804504	rs5015809	C	T	525.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=3.611;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:76804501_A_C:135,9,0:76804501
chr4	76804508	rs4241573	G	A	480.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.68;SOR=3.258;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:76804501_A_C:135,9,0:76804501
chr4	76805692	rs7666135	A	G	907.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.29;SOR=6.518;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr4	76805902	rs1976518	C	T	6190.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=0.793;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1546,163,0
chr4	76805962	rs1976517	G	A	4867.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=1.506;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1337,129,0
chr4	76805978	rs1566975	C	T	4268.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.84;SOR=2.027;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1051,99,0
chr4	76809319	rs7691712	A	G	4810.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=1.936;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1298,129,0
chr4	76809386	rs7691755	A	G	8139.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=1.170;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2266,234,0
chr4	76810856	rs11721508	C	A	314.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=1.32;SOR=1.609;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,74
chr4	76810940	rs2047984	T	C	3346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.66;SOR=3.467;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:952,75,0
chr4	76811175	rs28436183	G	T	1462.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=120;ExcessHet=3.0103;FS=2.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-8.040e-01;SOR=0.473;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,58:120:99:1471,0,1493
chr4	76812673	rs13116688	C	G	2031.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.44;ReadPosRankSum=1.28;SOR=0.887;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:298,0,203
chr4	76817221	rs10007472	T	C	204.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405e+00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.11;ReadPosRankSum=-6.790e-01;SOR=0.713;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,12:40:99:213,0,782
chr4	76836137	rs6823734	A	G	3348.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=69;ExcessHet=3.9794;FS=1.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=1.50;SOR=0.812;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,33:69:99:675,0,917
chr4	76838929	rs34444403	TA	T	414.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=19;ExcessHet=6.9897;FS=3.140;MQ=60.00;MQRankSum=0.00;QD=7.98;ReadPosRankSum=-1.324e+00;SOR=0.264;VQSLOD=5.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:140,0,208
chr4	76839729	rs2869456	A	C	437.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.00;SOR=0.963;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:162,0,280
chr4	76841748	rs2280101	A	G	1296.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.457e+00;DB;DP=25;ExcessHet=3.9794;FS=11.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=2.45;SOR=0.040;VQSLOD=17.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:318,0,384
chr4	76846755	rs937788	T	C	1097.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.170e-01;DB;DP=14;ExcessHet=6.9897;FS=6.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=-8.890e-01;SOR=0.115;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:242,0,128
chr4	76847151	rs3733233	T	C	423.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:77,0,32
chr4	76852128	rs71210228	A	AC	302.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=4.615;VQSLOD=6.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr4	76857064	rs66498356	G	C	167.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,161
chr4	76857148	rs138725752	AT	A	511.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.56;ReadPosRankSum=0.285;SOR=1.127;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:76857148_AT_A:195,0,284:76857148
chr4	76857150	rs200169565	T	C	511.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.412e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.34;ReadPosRankSum=0.285;SOR=1.230;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,5:10:99:0|1:76857148_AT_A:195,0,284:76857148
chr4	76857164	rs4859570	C	T	634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=14;ExcessHet=3.9794;FS=3.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=0.423;SOR=0.133;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,6:14:99:0|1:76857148_AT_A:224,0,387:76857148
chr4	76857309	rs4859571	C	T	1924.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DB;DP=81;ExcessHet=3.9794;FS=3.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-1.158e+00;SOR=0.520;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,39:81:99:881,0,1032
chr4	76857388	rs4859572	C	T	1889.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-01;DB;DP=41;ExcessHet=3.9794;FS=1.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.99;ReadPosRankSum=0.994;SOR=0.965;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,19:41:99:0|1:76857388_C_T:702,0,928:76857388
chr4	76857395	rs4859573	A	G	1761.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=36;ExcessHet=3.9794;FS=0.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.35;ReadPosRankSum=0.987;SOR=0.908;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,16:36:99:0|1:76857388_C_T:609,0,897:76857388
chr4	76861137	rs6847716	G	C	4942.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=55;ExcessHet=3.0103;FS=1.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=0.577;SOR=0.542;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1771,165,0
chr4	76861717	rs2292534	C	T	201.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.807;SOR=0.368;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:210,0,297
chr4	76877402	rs9790644	G	A	2342.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.840e-01;DB;DP=48;ExcessHet=1.5490;FS=3.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.23;ReadPosRankSum=-3.540e-01;SOR=0.250;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1642,144,0
chr4	76878688	rs2242470	G	A	2614.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=89;ExcessHet=3.9794;FS=0.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=-5.730e-01;SOR=0.754;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,50:89:99:1216,0,962
chr4	76881233	rs34627298	G	T	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.364e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-1.253e+00;SOR=0.836;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:534,0,482
chr4	76881392	rs67906710	C	T	438.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.714;DB;DP=44;ExcessHet=3.0103;FS=5.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-1.757e+00;SOR=1.630;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:28,16:44:99:0|1:76881392_C_T:447,0,1052:76881392
chr4	76881401	rs4859577	T	C	1177.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.260e-01;DB;DP=40;ExcessHet=3.9794;FS=0.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=2.32;SOR=0.863;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,25:40:99:1|0:76881392_C_T:693,0,555:76881392
chr4	76885423	rs2271527	T	C	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.072;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=-5.900e-02;SOR=0.818;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:733,0,660
chr4	76888168	rs11097192	T	C	411.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.37;ReadPosRankSum=1.04;SOR=2.303;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr4	76888235	rs12648437	A	G	136.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-02;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-1.180e+00;SOR=0.527;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:145,0,186
chr4	76902739	rs3733238	A	G	494.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.34;SOR=0.582;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:132,0,137
chr4	76902775	rs3733239	A	C	72.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:81,0,32
chr4	76903036	rs10008757	A	G	579.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.06;SOR=5.784;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:224,18,0
chr4	76903295	rs10021434	G	C	1351.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DB;DP=38;ExcessHet=3.9794;FS=5.155;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.21;SOR=0.348;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:491,0,534
chr4	76911752	rs34740469	G	A	2875.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=67;ExcessHet=3.9794;FS=4.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=1.14;SOR=0.304;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:1259,0,737
chr4	76924933	rs10031452	T	C	480.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.35;SOR=5.421;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:258,21,0
chr4	76928428	rs2276886	C	T	1295.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=1.38;SOR=0.666;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:661,0,610
chr4	76928729	rs2276885	A	G	538.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.499e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=-9.800e-02;SOR=0.922;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:547,0,431
chr4	76942761	rs34836828	AG	A	174.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,69
chr4	76942943	rs3921	C	G	6239.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.371;DB;DP=94;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=0.798;SOR=0.665;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,56:94:99:1552,0,948
chr4	76943137	rs4859584	G	C	4462.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=63;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.21;ReadPosRankSum=-7.170e-01;SOR=0.719;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:810,0,967
chr4	76943235	rs4859586	T	C	1663.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DB;DP=24;ExcessHet=1.5490;FS=4.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.81;ReadPosRankSum=-8.400e-01;SOR=0.138;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:423,0,369
chr4	76943296	rs4859587	A	C	887.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=15;ExcessHet=1.5490;FS=3.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=1.61;SOR=0.835;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:237,0,279
chr4	76943677	rs4859588	G	A	2616.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=50;ExcessHet=1.5490;FS=2.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=-5.570e-01;SOR=1.261;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:885,0,627
chr4	76943764	rs11298565	CT	C	975.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.828e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=0.00;SOR=0.521;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,8:13:99:210,0,117
chr4	76944491	rs4241578	T	C	4815.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=85;ExcessHet=1.5490;FS=4.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=-2.484e+00;SOR=1.140;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1349,0,1032
chr4	76944785	rs56061981	C	T	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.81;ReadPosRankSum=-7.090e-01;SOR=0.479;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,17:47:99:423,0,861
chr4	76955914	rs6532111	T	C	890.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=23;ExcessHet=1.5490;FS=2.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=-7.460e-01;SOR=1.302;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,5:23:99:141,0,397
chr4	76956188	rs4241580	T	C	1840.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=14;ExcessHet=1.5490;FS=3.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.73;ReadPosRankSum=-1.850e-01;SOR=0.956;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:251,0,184
chr4	76956289	rs5859488	C	CAA	4129.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.690e-01;DB;DP=42;ExcessHet=1.5490;FS=0.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=0.277;SOR=0.596;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,22:42:99:837,0,767
chr4	76956528	rs4859415	A	G	2363.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.737e+00;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=-7.660e-01;SOR=0.693;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:628,0,699
chr4	76956630	rs4859597	A	T	464.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=-7.320e-01;SOR=2.584;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:96:186,0,96
chr4	76957171	rs6819597	C	T	5117.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=74;ExcessHet=1.5490;FS=0.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=0.705;SOR=0.778;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1060,0,805
chr4	76996958	rs6532172	G	A	2861.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.692;DB;DP=43;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.06;ReadPosRankSum=-2.920e-01;SOR=0.731;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:598,0,614
chr4	76997258	rs7676265	T	C	1301.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.439e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.75;ReadPosRankSum=0.679;SOR=3.003;VQSLOD=18.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:361,0,233
chr4	77002952	rs4267761	G	A	628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.985e+00;DB;DP=29;ExcessHet=3.0103;FS=1.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.66;ReadPosRankSum=-6.380e-01;SOR=0.283;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,22:29:99:637,0,181
chr4	77019969	rs10022519	G	C	360.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.45;SOR=4.615;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	77021288	rs7654988	G	C	1386.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.374e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.52;ReadPosRankSum=0.980;SOR=1.179;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:332,0,259
chr4	77021782	rs11289247	CA	C	269.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.046e+00;DB;DP=17;ExcessHet=6.9897;FS=5.710;MQ=59.95;MQRankSum=0.00;QD=7.70;ReadPosRankSum=-7.880e-01;SOR=0.110;VQSLOD=4.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:104,0,114
chr4	77025273	rs7682766	C	T	1159.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=0.141;SOR=1.179;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:99:300,0,109
chr4	77025368	rs7697711	G	A	361.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.81;ReadPosRankSum=-9.670e-01;SOR=3.258;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:73,0,34
chr4	77025840	rs13130116	C	T	2865.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.235;DB;DP=98;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-1.670e-01;SOR=0.686;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1250,0,1323
chr4	77026058	.	C	A	54.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.07;ReadPosRankSum=0.431;SOR=0.307;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,154
chr4	77028783	rs10033843	G	A	1468.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.278;DB;DP=34;ExcessHet=6.9897;FS=2.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=-1.033e+00;SOR=0.951;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:393,0,377
chr4	77033590	rs1128864	C	T	3562.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=165;ExcessHet=3.9794;FS=0.391;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=2.03;SOR=0.687;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,71:165:99:1573,0,2284
chr4	77033725	rs14773	C	A	1614.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.935e+00;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.739;SOR=0.588;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,17:47:99:435,0,942
chr4	77038570	rs28627281	C	T	319.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=1.21;SOR=0.387;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:107,0,134
chr4	77052530	rs13126384	T	C	239.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.20;ReadPosRankSum=-4.130e-01;SOR=0.631;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:115,0,182
chr4	77053562	rs4859619	C	T	2489.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=27;ExcessHet=3.9794;FS=9.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=-3.880e-01;SOR=2.093;VQSLOD=18.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:406,0,401
chr4	77060869	rs12499900	G	C	228.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.509e+00;DB;DP=12;ExcessHet=3.0103;FS=2.881;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=-4.090e-01;SOR=0.197;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:237,0,136
chr4	77065142	rs66599877	C	T	87.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=2.833;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr4	77065264	rs11736522	C	T	1136.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950e-01;DB;DP=32;ExcessHet=3.9794;FS=5.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.682;SOR=0.225;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:359,0,631
chr4	77065476	rs145851413	TAA	T	1748.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-02;DB;DP=69;ExcessHet=1.5490;FS=0.565;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=-6.980e-01;SOR=0.767;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,22:69:99:643,0,844
chr4	77065518	rs11946345	T	C	1181.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DB;DP=59;ExcessHet=3.9794;FS=1.588;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.288;SOR=0.876;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,18:59:99:381,0,1049
chr4	77066587	rs13151075	T	C	397.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.564e+00;DB;DP=13;ExcessHet=3.9794;FS=3.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.137;SOR=0.123;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:219,0,215
chr4	77067133	rs735696	C	T	910.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.642;DB;DP=24;ExcessHet=3.9794;FS=3.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=1.04;SOR=0.364;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:318,0,406
chr4	77067368	rs735697	A	G	509.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=7;ExcessHet=3.9794;FS=11.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.36;ReadPosRankSum=1.20;SOR=3.816;VQSLOD=12.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,108
chr4	77067434	rs894254	C	T	264.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.07;SOR=4.174;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr4	77083070	rs35414001	TCAG	T	1078.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=0.530;SOR=0.760;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,27:36:99:0|1:77083070_TCAG_T:1087,0,653:77083070
chr4	77083082	rs3755890	A	T	975.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.51;ReadPosRankSum=0.392;SOR=0.610;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,23:30:99:0|1:77083070_TCAG_T:984,0,617:77083070
chr4	77084589	rs35583533	T	C	137.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.72;ReadPosRankSum=-1.525e+00;SOR=0.941;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,7:24:99:146,0,497
chr4	77095143	rs13119254	A	G	152.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:160,0,61
chr4	77096843	rs34334700	C	T	147.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-02;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=-1.880e-01;SOR=0.892;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:156,0,341
chr4	77097336	rs2053487	C	T	143.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:152,0,29
chr4	77100901	rs894248	A	G	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=0.464;SOR=0.892;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:184,0,147
chr4	77101972	rs2304813	G	A	88.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-1.890e-01;SOR=0.693;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:97:97,0,109
chr4	77102006	rs2304814	C	G	221.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=6.000e-03;SOR=1.085;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:230,0,128
chr4	77105911	rs72857048	A	G	66.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.04;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:73:75,0,73
chr4	77105938	.	CAAAAA	C	440.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.600e-02;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=0.061;SOR=0.884;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,10:15:99:0|1:77105938_CAAAAA_C:447,0,236:77105938
chr4	77105952	.	A	ATTT	540.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.940e-01;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.44;ReadPosRankSum=0.351;SOR=0.368;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,13:19:99:0|1:77105938_CAAAAA_C:549,0,276:77105938
chr4	77106046	rs67917805	A	T	516.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.987;SOR=0.776;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:525,0,433
chr4	77106137	rs17001588	G	C	116.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.46;ReadPosRankSum=-9.900e-02;SOR=0.602;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,5:18:99:125,0,346
chr4	77106221	rs17001589	T	C	109.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:118,0,63
chr4	77134786	rs11547135	C	T	2947.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.124e+00;DB;DP=50;ExcessHet=1.5490;FS=2.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=-8.200e-02;SOR=0.357;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:2014,150,0
chr4	77138658	rs1866975	C	T	257.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.890e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=-1.930e+00;SOR=0.368;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr4	77185176	rs72860111	A	T	255.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=0.566;SOR=1.022;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:74,0,68
chr4	77185194	rs72860114	C	T	233.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.272;SOR=1.022;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,65
chr4	77192838	rs3733251	A	C	2243.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=67;ExcessHet=3.9794;FS=6.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=0.940;SOR=1.177;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,36:67:99:963,0,716
chr4	77201332	rs1036787	G	A	2315.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.663e+00;DB;DP=24;ExcessHet=3.0103;FS=1.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=1.25;SOR=0.507;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:281,0,401
chr4	77201487	rs1036788	C	T	4920.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=83;ExcessHet=3.9794;FS=1.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=0.878;SOR=0.828;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,42:83:99:1110,0,1069
chr4	77204500	rs1542096	C	T	5267.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.088e+00;DB;DP=66;ExcessHet=3.0103;FS=6.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=-1.579e+00;SOR=0.265;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1938,197,0
chr4	77211104	rs1837871	A	G	595.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.986;SOR=0.941;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:346,0,185
chr4	77227676	rs56049812	A	C	67.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.54;ReadPosRankSum=0.431;SOR=1.179;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:75,0,31
chr4	77231294	rs3733248	A	C	2542.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=16;ExcessHet=3.9794;FS=5.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.79;ReadPosRankSum=-6.520e-01;SOR=2.217;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:210,0,294
chr4	77246835	rs2271403	T	C	747.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.77;ReadPosRankSum=-1.158e+00;SOR=2.303;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:175,0,213
chr4	77274242	rs12504985	T	C	2496.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=60;ExcessHet=1.5490;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=-9.810e-01;SOR=0.834;VQSLOD=6.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,33:60:99:1001,0,724
chr4	77278411	rs4241592	T	C	1286.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.78;ReadPosRankSum=1.01;SOR=1.225;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,143
chr4	77289047	rs78736198	CT	C	749.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=11;ExcessHet=3.0103;FS=5.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=0.728;SOR=0.157;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:11:55:55,0,141
chr4	77290561	rs72657825	G	A	2189.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e-01;DB;DP=45;ExcessHet=3.9794;FS=3.158;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=0.050;SOR=1.184;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:623,0,674
chr4	77296600	rs1876535	T	C	1972.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.850e-01;DB;DP=66;ExcessHet=3.9794;FS=0.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.172;SOR=0.602;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,27:66:99:624,0,1054
chr4	77303621	rs17252554	C	T	971.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.234;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:519,0,326
chr4	77303898	rs6844174	C	T	7463.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.342e+00;DB;DP=77;ExcessHet=3.0103;FS=0.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.44;ReadPosRankSum=1.16;SOR=0.606;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,40:77:99:969,0,1097
chr4	77305566	rs80162610	C	T	630.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=69;ExcessHet=3.0103;FS=0.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=0.252;SOR=0.877;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,24:69:99:639,0,1215
chr4	77357491	rs200881265	C	CT	217.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.51;ReadPosRankSum=0.328;SOR=0.473;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:77357491_C_CT:69,0,358:77357491
chr4	77357492	.	C	A	217.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.51;ReadPosRankSum=0.328;SOR=0.473;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:77357491_C_CT:69,0,358:77357491
chr4	77357497	rs200553239	T	TAAA	217.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.51;ReadPosRankSum=0.328;SOR=0.473;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:77357491_C_CT:69,0,358:77357491
chr4	77357498	rs189707263	G	T	217.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.70;ReadPosRankSum=1.04;SOR=0.368;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:69:0|1:77357491_C_CT:69,0,358:77357491
chr4	77357528	rs11944802	G	T	156.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.623;SOR=0.551;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,136
chr4	77637502	rs344122	A	C	7312.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=106;ExcessHet=3.9794;FS=3.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=0.230;SOR=0.894;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,60:106:99:1595,0,1082
chr4	77660162	rs344140	G	C	11155.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=201;ExcessHet=3.9794;FS=1.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=1.77;SOR=0.559;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,109:201:99:2956,0,2420
chr4	77660731	rs344141	C	G	7167.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.250e-01;DB;DP=118;ExcessHet=3.9794;FS=3.934;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=-3.900e-01;SOR=0.813;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,49:118:99:1442,0,2267
chr4	77662248	rs344142	G	A	13238.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=253;ExcessHet=3.9794;FS=1.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=1.22;SOR=0.539;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:117,136:253:99:3641,0,2914
chr4	77662309	rs344143	C	T	12882.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.700e-02;DB;DP=218;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=-1.000e-01;SOR=0.672;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,125:218:99:3683,0,2692
chr4	77663262	rs344144	T	C	5189.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=70;ExcessHet=3.9794;FS=0.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=1.29;SOR=0.774;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,38:70:99:1139,0,843
chr4	77663305	rs3830364	CTCTA	C	570.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DB;DP=32;ExcessHet=3.0103;FS=2.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=1.46;SOR=1.609;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,15:32:99:579,0,776
chr4	77675505	rs3733242	C	T	2926.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-01;DB;DP=258;ExcessHet=3.0103;FS=0.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-2.610e-01;SOR=0.613;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:134,124:258:99:2935,0,3382
chr4	77677557	rs11383067	T	TC	69.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.32;ReadPosRankSum=1.38;SOR=2.303;VQSLOD=5.08;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:77677557_T_TC:78,0,93:77677557
chr4	77677558	rs11383066	T	TCTC	69.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=1.38;SOR=2.303;VQSLOD=6.48;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:77677557_T_TC:78,0,93:77677557
chr4	77817362	rs2703131	T	C	3457.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.89;DB;DP=149;ExcessHet=3.9794;FS=2.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-1.221e+00;SOR=0.597;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,79:149:99:2052,0,1707
chr4	77817874	rs2703130	G	T	2535.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.310e-01;DB;DP=210;ExcessHet=3.0103;FS=1.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.722;SOR=0.822;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,99:210:99:2544,0,2848
chr4	77818202	rs2645674	T	C	3001.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=141;ExcessHet=3.9794;FS=1.502;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.07;SOR=0.584;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,56:141:99:1412,0,2380
chr4	77818548	rs2703129	T	C	1958.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.32;DB;DP=65;ExcessHet=3.9794;FS=0.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=2.78;SOR=0.762;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,32:65:99:1043,0,996
chr4	77819187	rs2703128	C	G	436.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=12;ExcessHet=3.9794;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.96;ReadPosRankSum=1.19;SOR=1.885;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:177,0,264
chr4	77935887	rs77622508	T	C	721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.340;DB;DP=16;ExcessHet=3.9794;FS=8.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=0.907;SOR=0.055;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:339,0,149
chr4	77949997	rs111698952	TGGTCCAA	T	7133.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.300e-01;DB;DP=55;ExcessHet=3.0103;FS=1.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=-9.990e-01;SOR=0.540;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2476,166,0
chr4	77957993	rs189706661	A	G	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=52;ExcessHet=3.0103;FS=2.589;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.275;SOR=1.219;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,27:52:99:733,0,540
chr4	77958130	rs1127587	G	A	449.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.025e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.63;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=0.00;SOR=0.990;VQSLOD=4.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr4	77976104	rs4252905	C	T	71.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=2.303;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	77976617	rs11378505	C	CT	230.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.200e-02;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=59.53;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=-6.740e-01;SOR=0.859;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:43:129,0,43
chr4	77987351	rs4241602	A	G	3073.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.93;SOR=2.250;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:83:955,83,0
chr4	77996521	rs4252767	A	C	3676.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.57;SOR=6.826;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:990,78,0
chr4	78034309	rs4859743	A	C	25399.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.09;DB;DP=335;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=-2.470e-01;SOR=0.719;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,335:335:99:10379,1005,0
chr4	78081744	rs28648488	G	C	1525.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.016e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.68;ReadPosRankSum=-4.250e-01;SOR=1.160;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:472,36,0
chr4	78100200	rs7688769	C	T	585.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=-5.240e-01;SOR=1.508;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr4	78106123	rs28503908	C	T	276.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.52;SOR=4.174;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	78669454	rs6855336	A	G	4542.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.34;DB;DP=45;ExcessHet=3.0103;FS=1.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.04;ReadPosRankSum=0.895;SOR=0.525;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1653,135,0
chr4	78693984	rs7693256	A	G	751.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=1.04;SOR=1.802;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:473,33,0
chr4	78694206	rs36124924	T	C	435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=48;ExcessHet=3.0103;FS=1.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.07;ReadPosRankSum=-1.290e-01;SOR=0.513;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,17:48:99:444,0,670
chr4	78694327	rs77348463	TA	T	129.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=12;ExcessHet=3.9794;FS=1.221;MQ=60.00;MQRankSum=0.00;QD=3.32;ReadPosRankSum=-6.230e-01;SOR=1.022;VQSLOD=5.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,4:12:48:48,0,158
chr4	78697552	rs34417165	T	TA	1472.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.331;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.65;ReadPosRankSum=1.01;SOR=0.787;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:629,72,0
chr4	78740132	rs6828302	G	C	2280.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=34;ExcessHet=3.9794;FS=1.426;MQ=60.00;MQRankSum=0.00;QD=17.55;ReadPosRankSum=-1.790e-01;SOR=0.535;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:490,0,345
chr4	78740203	.	G	GACACACACACACACACACACACACAC	1108.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DP=3;ExcessHet=3.9794;FS=0.000;MQ=59.79;MQRankSum=0.00;QD=23.09;ReadPosRankSum=2.08;SOR=0.683;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:11:178,11,0
chr4	78783818	rs60135456	G	T	1734.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.583e+00;DB;DP=48;ExcessHet=3.9794;FS=8.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=0.547;SOR=0.134;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,25:48:99:753,0,696
chr4	78830434	rs1801350	G	C	435.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.80;ReadPosRankSum=1.61;SOR=0.661;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,19:64:99:444,0,1149
chr4	78830584	rs72869573	C	T	562.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=0.608;SOR=1.609;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:184,0,326
chr4	78871169	rs78003393	G	T	116.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.602e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.984;SOR=0.269;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:125,0,301
chr4	78873605	rs35979107	A	G	1532.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=122;ExcessHet=3.0103;FS=0.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.662;SOR=0.603;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,58:122:99:1541,0,1547
chr4	78873629	rs17002849	G	A	1881.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=142;ExcessHet=3.0103;FS=1.325;MQ=59.99;MQRankSum=1.06;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-2.780e-01;SOR=0.572;VQSLOD=1.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:68,74:142:99:1890,0,1466
chr4	78873823	rs1801521	A	T	514.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.614e+00;DB;DP=36;ExcessHet=3.0103;FS=1.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=1.14;SOR=0.330;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:523,0,631
chr4	78882083	rs17410182	T	C	51.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-1.645e+00;SOR=0.446;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,107
chr4	78882331	rs57716781	C	CA	363.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=5.04;ReadPosRankSum=-8.100e-01;SOR=0.655;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,18:40:99:306,0,337
chr4	78986882	rs1502884	G	A	1296.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=-1.540e-01;SOR=1.802;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:297,0,212
chr4	78987157	rs4859905	A	G	5380.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.330e-01;DB;DP=93;ExcessHet=3.9794;FS=2.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.36;ReadPosRankSum=-6.390e-01;SOR=0.874;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,44:93:99:1092,0,1240
chr4	78987284	rs4859516	A	C	1261.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=10;ExcessHet=3.9794;FS=2.602;MQ=60.00;MQRankSum=0.00;QD=25.24;ReadPosRankSum=-6.450e-01;SOR=2.038;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:78987284_A_C:150,0,353:78987284
chr4	78987285	rs4859906	C	A	1261.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=10;ExcessHet=3.9794;FS=2.602;MQ=60.00;MQRankSum=0.00;QD=25.24;ReadPosRankSum=-6.450e-01;SOR=2.038;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:78987284_A_C:150,0,353:78987284
chr4	78989630	rs10016219	G	A	1960.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=1.75;SOR=0.733;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:383,0,299
chr4	78989672	rs10016229	G	C	3082.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=57;ExcessHet=3.9794;FS=2.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=1.80;SOR=0.988;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,31:57:99:754,0,652
chr4	78989716	rs10008489	T	C	3997.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.177;DB;DP=79;ExcessHet=3.9794;FS=3.922;MQ=60.00;MQRankSum=0.00;QD=17.69;ReadPosRankSum=0.301;SOR=0.951;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1057,0,759
chr4	78989842	rs10016432	G	A	2429.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=56;ExcessHet=3.9794;FS=1.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=-3.860e-01;SOR=0.921;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:717,0,620
chr4	78989939	rs873455	G	A	867.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=1.43;SOR=1.839;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:221,0,201
chr4	79158350	rs1378241	T	C	595.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.25;SOR=4.047;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:251,18,0
chr4	79173191	rs17455826	A	G	182.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=1.04;SOR=0.859;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	79173335	rs13117388	C	T	2680.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.570e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=2.21;SOR=0.950;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:657,60,0
chr4	79176066	rs1017649	G	A	274.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=-9.670e-01;SOR=2.093;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	79176245	rs1017648	G	A	3603.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.351;DB;DP=27;ExcessHet=3.0103;FS=16.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.38;ReadPosRankSum=-7.010e-01;SOR=2.259;VQSLOD=12.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1017,81,0
chr4	79176325	rs1017647	C	T	6400.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.840;DB;DP=65;ExcessHet=3.0103;FS=2.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=1.44;SOR=0.974;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2012,195,0
chr4	79176361	rs1017646	T	C	8401.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;DB;DP=88;ExcessHet=3.0103;FS=3.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=1.06;SOR=0.491;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2796,264,0
chr4	79186047	rs6856362	G	A	9412.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.574e+00;DB;DP=150;ExcessHet=3.0103;FS=6.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=0.970;SOR=0.372;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4411,448,0
chr4	79186171	rs2867014	G	A	10781.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.073;DB;DP=171;ExcessHet=3.0103;FS=0.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-1.130e+00;SOR=0.563;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,171:171:99:5111,512,0
chr4	79186216	rs200053639	C	T	1387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=111;ExcessHet=3.0103;FS=2.751;MQ=60.00;MQRankSum=0.00;QD=12.50;ReadPosRankSum=-9.700e-02;SOR=0.452;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,55:111:99:1396,0,1414
chr4	79187716	rs6847377	A	G	1773.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.852;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.10;ReadPosRankSum=-3.600e-01;SOR=0.957;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:79187716_A_G:675,45,0:79187716
chr4	79187724	rs6820900	G	A	1954.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.046e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.30;ReadPosRankSum=0.498;SOR=0.941;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:79187716_A_G:753,51,0:79187716
chr4	79187832	rs2008587	G	A	8178.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.270e-01;DB;DP=73;ExcessHet=3.0103;FS=0.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.29;ReadPosRankSum=-1.435e+00;SOR=0.591;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2547,218,0
chr4	79188161	rs2198635	G	A	7664.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=0.257;SOR=0.726;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2685,225,0
chr4	79188584	rs61999335	C	T	2409.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540e-01;DB;DP=173;ExcessHet=3.0103;FS=4.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-3.550e-01;SOR=1.044;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,94:173:99:2418,0,1997
chr4	79202486	rs35419939	A	G	3888.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=48;ExcessHet=3.0103;FS=4.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.93;ReadPosRankSum=0.724;SOR=1.226;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1549,143,0
chr4	79202779	rs34535077	G	A	2330.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.907;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=-2.060e-01;SOR=1.098;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:724,63,0
chr4	79203766	rs11296935	TA	T	1640.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=6.358;VQSLOD=6.47;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,14:14:42:482,42,0
chr4	79204209	rs1378236	C	T	4873.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=2.352;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1523,144,0
chr4	79204284	rs144958712	TTGTC	T	1656.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.470e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.75;ReadPosRankSum=-1.480e-01;SOR=2.737;VQSLOD=6.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:675,45,0
chr4	79205699	rs12504081	T	A	7015.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.214;DB;DP=83;ExcessHet=3.0103;FS=8.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=0.360;SOR=1.306;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2697,248,0
chr4	79205747	rs6815945	A	G	4202.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=0.728;SOR=0.742;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1547,132,0
chr4	79207784	rs967635	G	T	526.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=-8.420e-01;SOR=2.303;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr4	79228881	rs7441599	A	G	363.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=56.72;QD=31.63;SOR=4.804;VQSLOD=3.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:110,9,0
chr4	79228914	rs10434011	T	C	435.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=55.90;QD=29.90;SOR=4.977;VQSLOD=3.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr4	79228928	rs345530	C	G	480.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=55.90;POSITIVE_TRAIN_SITE;QD=28.65;SOR=4.977;VQSLOD=5.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	79229037	rs345529	T	C	5102.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=34.25;SOR=2.287;VQSLOD=4.80;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1441,129,0
chr4	79229435	rs41537644	C	G	1903.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.883e+00;DB;DP=17;ExcessHet=3.0103;FS=6.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=-1.362e+00;SOR=2.457;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:665,51,0
chr4	79238448	rs345515	T	C	4235.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.94;SOR=2.644;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1610,132,0
chr4	79238649	rs345514	T	C	9681.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=0.957;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3097,308,0
chr4	79240063	rs345513	A	G	7707.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.52;SOR=0.771;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2131,192,0
chr4	79240473	rs345511	C	T	3092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.75;POSITIVE_TRAIN_SITE;QD=32.55;SOR=1.634;VQSLOD=5.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:898,84,0
chr4	79284694	rs6835769	C	T	4409.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.109e+00;DB;DP=86;ExcessHet=3.9794;FS=2.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.34;ReadPosRankSum=0.283;SOR=0.868;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2645,258,0
chr4	79300993	rs12512164	G	A	1871.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.836;SOR=0.693;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,29:64:99:770,0,796
chr4	79301497	rs3086799	T	TGGGAGTG	291.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.32;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:81:81,0,87
chr4	79305148	rs7694602	C	G	392.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198e+00;DB;DP=13;ExcessHet=3.9794;FS=2.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=-5.680e-01;SOR=0.352;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:210,0,135
chr4	79305177	rs7677133	T	G	472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=22;ExcessHet=3.9794;FS=1.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.88;SOR=0.460;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:259,0,293
chr4	79305501	rs7656704	A	G	423.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=1.37;SOR=0.990;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:92:144,0,92
chr4	79328729	rs58559381	T	TA	738.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DB;DP=37;ExcessHet=3.9794;FS=1.056;MQ=60.00;MQRankSum=0.00;QD=8.58;ReadPosRankSum=0.150;SOR=0.945;VQSLOD=5.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,12:37:99:250,0,591
chr4	79333858	rs35396776	A	G	420.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=0.00;SOR=3.611;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:78,0,33
chr4	79339950	rs12649596	G	C	811.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.923e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=-7.770e-01;SOR=0.651;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:275,0,257
chr4	79343286	rs6836084	G	C	664.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.53;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.928;SOR=0.643;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:263,0,358
chr4	79345650	rs1471752	A	G	1291.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.474;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=1.73;SOR=0.776;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:493,0,550
chr4	79350115	rs2054722	C	T	1105.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.241e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=0.264;SOR=1.136;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:592,45,0
chr4	79350200	rs112867538	C	CTGTG,CTGTGTGTG	3962.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.29;DB;DP=48;ExcessHet=3.9794;FS=8.116;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=0.939;SOR=1.362;VQSLOD=5.67;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,17,23:48:99:1829,1012,966,701,0,623
chr4	79351249	rs2054721	C	A	372.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.036e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.92;ReadPosRankSum=0.253;SOR=1.061;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:79351249_C_A:173,12,0:79351249
chr4	79351252	rs2054720	C	G	165.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:65:0|1:79351249_C_A:65,0,71:79351249
chr4	79359885	rs2170899	T	G	1439.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.010e-01;DB;DP=30;ExcessHet=3.9794;FS=1.048;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=-7.520e-01;SOR=0.904;VQSLOD=6.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,20:30:99:639,0,288
chr4	79360438	rs12643573	A	T	126.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.524;SOR=0.693;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:71,0,32
chr4	79362209	rs2035510	A	G	178.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.524;SOR=0.569;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:51:51,0,221
chr4	79365152	rs3762844	G	A	476.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=1.54;SOR=1.230;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:245,21,0
chr4	79365479	rs7678731	C	T	294.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=7;ExcessHet=3.9794;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=0.792;SOR=0.105;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:66:158,0,66
chr4	79365522	rs2867068	A	G	510.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.90;ReadPosRankSum=1.96;SOR=2.584;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:284,21,0
chr4	79366655	rs3749489	G	C	3566.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166e+00;DB;DP=144;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.107;SOR=0.719;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,80:144:99:1858,0,1579
chr4	79371579	rs13148498	G	A	165.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=-5.980e-01;SOR=1.179;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:98:98,0,104
chr4	79372693	rs959539	T	G	278.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.83;ReadPosRankSum=0.524;SOR=2.833;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr4	79372856	rs10026662	A	C	3036.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.830;DB;DP=51;ExcessHet=3.9794;FS=4.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=-4.480e-01;SOR=0.434;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1630,153,0
chr4	79372930	rs753752	C	T	3742.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=80;ExcessHet=3.9794;FS=5.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.426;SOR=0.434;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2280,238,0
chr4	79373254	rs753751	T	C	868.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.305e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=-6.990e-01;SOR=0.739;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:366,27,0
chr4	79385719	rs6851427	G	A	2044.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=92;ExcessHet=3.9794;FS=1.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=3.08;SOR=0.816;VQSLOD=22.18;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1200,0,1265
chr4	79385803	rs11933507	G	A	1209.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.32;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=0.671;SOR=0.449;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:529,0,463
chr4	79387278	rs4975120	C	A	633.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.457;SOR=0.527;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,9:15:99:0|1:79387278_C_A:312,0,266:79387278
chr4	79387281	rs12640944	T	G	926.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.70;ReadPosRankSum=0.044;SOR=0.919;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,9:18:99:1|0:79387278_C_A:293,0,351:79387278
chr4	79387442	rs7660664	C	T	3049.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=127;ExcessHet=3.9794;FS=1.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=0.434;SOR=0.801;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,65:127:99:1523,0,1589
chr4	79387464	rs7684722	A	G	12547.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.23;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=-3.360e-01;SOR=0.680;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4532,417,0
chr4	79391020	rs7681619	C	T	5045.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.04;DB;DP=42;ExcessHet=3.0103;FS=5.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=0.976;SOR=1.781;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:79391020_C_T:1899,129,0:79391020
chr4	79391036	rs1496602	T	C	5797.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.85;DB;DP=53;ExcessHet=3.0103;FS=4.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.91;ReadPosRankSum=0.801;SOR=1.447;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,53:53:99:1|1:79391020_C_T:2248,159,0:79391020
chr4	79391256	rs7664505	T	C	12502.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=141;ExcessHet=3.0103;FS=2.627;MQ=59.99;MQRankSum=1.15;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=-1.564e+00;SOR=0.908;VQSLOD=1.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4719,422,0
chr4	79391424	rs6533688	C	T	2348.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=64;ExcessHet=6.9897;FS=0.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-2.140e-01;SOR=0.778;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,30:64:99:0|1:79391424_C_T:810,0,1258:79391424
chr4	79391427	rs11728668	T	G	1434.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.070e-01;DB;DP=59;ExcessHet=3.9794;FS=1.788;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.26;ReadPosRankSum=0.055;SOR=0.934;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,29:59:99:1|0:79391424_C_T:741,0,1162:79391424
chr4	79394836	rs35583270	C	G	559.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.115e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-6.670e-01;SOR=0.512;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:343,0,299
chr4	79396375	rs1979760	G	A	805.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.39;ReadPosRankSum=0.706;SOR=0.693;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:208,0,187
chr4	79400868	rs11098194	C	T	969.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=1.53;SOR=0.579;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:543,0,651
chr4	79403146	rs34505482	A	T	1271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718e+00;DB;DP=54;ExcessHet=3.9794;FS=2.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=0.630;SOR=0.373;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,21:54:99:587,0,1063
chr4	79409899	rs1496604	T	C	278.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.76;SOR=2.833;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr4	79409997	rs1496603	T	C	1012.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.520e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.69;ReadPosRankSum=-2.547e+00;SOR=0.776;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr4	79417749	rs7698976	A	G	396.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.84;SOR=4.804;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr4	79417786	rs7675266	C	T	274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=1.37;SOR=0.446;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:107,0,142
chr4	79420787	rs4975134	C	T	532.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=0.524;SOR=3.126;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:112,0,63
chr4	79420864	rs7677541	T	C	1825.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.634;DB;DP=26;ExcessHet=1.5490;FS=3.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.95;ReadPosRankSum=0.999;SOR=1.654;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,9:26:99:0|1:79420864_T_C:366,0,761:79420864
chr4	79420869	rs76630865	C	T	808.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=28;ExcessHet=3.9794;FS=11.212;MQ=60.00;MQRankSum=0.00;QD=12.63;ReadPosRankSum=0.309;SOR=2.712;VQSLOD=12.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,10:28:99:0|1:79420864_T_C:366,0,761:79420864
chr4	79420870	rs7695038	C	G	1888.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=28;ExcessHet=1.5490;FS=1.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=0.562;SOR=1.236;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,10:28:99:0|1:79420864_T_C:366,0,761:79420864
chr4	79432256	rs1027445	A	G	1516.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606e+00;DB;DP=23;ExcessHet=1.5490;FS=2.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=-2.210e-01;SOR=0.223;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:386,0,276
chr4	79434325	rs1496606	A	G	532.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=0.876;SOR=0.776;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr4	79437155	rs3749487	C	T	4255.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=161;ExcessHet=3.9794;FS=2.346;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.256;SOR=0.767;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,97:161:99:2324,0,1413
chr4	79440425	rs2903471	T	C	1548.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e-01;DB;DP=21;ExcessHet=1.5490;FS=5.190;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.61;ReadPosRankSum=-2.170e-01;SOR=3.306;VQSLOD=17.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:423,0,227
chr4	79442873	rs17470769	C	T	473.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=-1.138e+00;SOR=1.022;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:267,0,272
chr4	79443774	rs931604	T	A	3220.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.28;ReadPosRankSum=-1.095e+00;SOR=0.851;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1065,99,0
chr4	79443850	rs931606	G	A	4069.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.650e-01;DB;DP=69;ExcessHet=1.5490;FS=0.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=0.141;SOR=0.606;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,41:69:99:947,0,594
chr4	79444029	rs1496598	G	A	1757.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=33;ExcessHet=1.5490;FS=3.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.44;ReadPosRankSum=-9.580e-01;SOR=1.296;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:307,0,503
chr4	79447454	rs12332067	G	A	343.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=-6.520e-01;SOR=1.609;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:104,0,150
chr4	79455714	rs4975070	C	G	2828.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DB;DP=86;ExcessHet=1.5490;FS=3.073;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.600;SOR=0.998;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,33:86:99:696,0,1263
chr4	79455733	rs4975139	C	T	2600.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.696;DB;DP=79;ExcessHet=1.5490;FS=5.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.979;SOR=1.250;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,31:79:99:777,0,1245
chr4	79455858	rs4975140	T	A	1385.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=1.66;SOR=0.693;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:628,54,0
chr4	79458537	rs6533756	C	A	261.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=1.04;SOR=1.609;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,119
chr4	79460647	.	GA	G	948.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=17.89;ReadPosRankSum=0.112;SOR=0.703;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:96:96,0,133
chr4	79503230	rs1472365	T	C	1158.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=14;ExcessHet=1.5490;FS=2.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.59;ReadPosRankSum=0.382;SOR=1.721;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:484,42,0
chr4	79512800	rs10003947	T	A	3257.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.328;DB;DP=67;ExcessHet=1.5490;FS=1.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=1.97;SOR=0.539;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2046,201,0
chr4	79531186	rs5944	C	T	649.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.789;DB;DP=21;ExcessHet=3.9794;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-7.550e-01;SOR=1.044;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:277,0,279
chr4	79531308	rs4612	C	T	1120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430e-01;DB;DP=35;ExcessHet=3.9794;FS=1.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-7.450e-01;SOR=0.976;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,15:35:99:337,0,501
chr4	79845007	rs13108247	C	A	4123.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.738e+00;DB;DP=58;ExcessHet=3.9794;FS=2.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=2.11;SOR=0.542;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1779,174,0
chr4	79847536	rs7664587	C	T	508.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=-3.280e-01;SOR=1.508;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr4	79854117	rs10857058	T	C	1312.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=1.35;SOR=1.567;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:453,33,0
chr4	79854436	rs10857059	T	C	5948.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.627e+00;DB;DP=109;ExcessHet=3.9794;FS=0.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=-8.190e-01;SOR=0.653;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3434,326,0
chr4	79854588	rs34224435	GGAGT	G	691.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.690e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.61;ReadPosRankSum=0.976;SOR=1.445;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr4	80828668	rs10027070	A	T	1851.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.154e+00;DB;DP=47;ExcessHet=1.5490;FS=1.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=0.941;SOR=0.961;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1472,141,0
chr4	80828740	rs6819294	T	A	800.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.051e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=0.637;SOR=1.609;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:692,51,0
chr4	80899523	rs34603918	CA	C	63.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=21.29;SOR=2.833;VQSLOD=2.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:79,9,0
chr4	80905740	rs28645467	T	C	282.32	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.108;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=1.37;SOR=1.445;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:195,15,0
chr4	80905833	rs28534734	T	C	807.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.410e-01;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=59.58;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=0.031;SOR=0.481;VQSLOD=3.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:552,51,0
chr4	80905851	rs28688624	A	C	933.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.508e+00;DB;DP=21;ExcessHet=1.5490;FS=1.255;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.62;ReadPosRankSum=0.230;SOR=0.507;VQSLOD=4.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:621,63,0
chr4	80905930	.	G	GA	640.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.590e-01;DP=46;ExcessHet=3.0103;FS=2.622;MQ=60.00;MQRankSum=0.00;QD=13.92;ReadPosRankSum=0.011;SOR=0.867;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,28:46:99:649,0,369
chr4	80905990	rs12647691	C	G	3826.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=1.02;SOR=0.656;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1832,180,0
chr4	80906131	rs4444771	C	T	885.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.220e-01;DB;DP=10;ExcessHet=3.9794;FS=5.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=1.34;SOR=2.247;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:423,30,0
chr4	80906214	rs6534693	T	A	329.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=-9.670e-01;SOR=1.329;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr4	80939979	rs4336166	C	T	987.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=23;ExcessHet=1.5490;FS=5.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=0.497;SOR=1.609;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:679,68,0
chr4	80975372	rs10745242	A	T	3087.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.734e+00;DB;DP=60;ExcessHet=3.9794;FS=0.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.05;ReadPosRankSum=0.160;SOR=0.620;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:60:99:1912,185,0
chr4	80975757	rs57745413	AGAG	A	72.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.12;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:81:81,0,88
chr4	80976420	rs11730210	G	T	5559.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.390e+00;DB;DP=131;ExcessHet=6.9897;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=-2.770e-01;SOR=0.750;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,68:131:99:1645,0,1631
chr4	80977078	rs4594664	T	G	2964.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.60;DB;DP=42;ExcessHet=3.9794;FS=1.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.661;SOR=0.572;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1275,126,0
chr4	80977297	rs4428232	T	A	178.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.81;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:187,0,135
chr4	80990363	rs144240230	G	GATCT	451.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=-4.310e-01;SOR=0.527;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:99:147,0,227
chr4	80993382	rs6818557	G	C	1061.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=1.5490;FS=8.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.26;ReadPosRankSum=0.936;SOR=5.283;VQSLOD=12.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:98:183,0,98
chr4	81082214	rs17004829	G	A	219.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=1.53;SOR=1.402;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:15:228,0,15
chr4	81122995	rs56102626	G	A	424.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.987e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=-1.467e+00;SOR=0.859;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:433,0,418
chr4	81123013	rs141824276	CGT	C	65.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.300;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.51;ReadPosRankSum=-8.180e-01;SOR=0.412;VQSLOD=5.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,4:26:74:74,0,715
chr4	81123378	rs142234659	C	T	3683.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-02;DB;DP=346;ExcessHet=3.0103;FS=4.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-1.062e+00;SOR=0.899;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:182,164:346:99:3692,0,4290
chr4	81187895	rs1047245	A	C	2186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.96;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=0.048;SOR=0.597;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,34:69:99:1080,0,1036
chr4	81188513	rs35954793	C	A	150.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.34;ReadPosRankSum=0.619;SOR=0.169;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:99,0,230
chr4	81207963	rs3733336	A	G	180.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.61;SOR=3.611;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	81222286	rs13119149	T	G	981.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.48;DB;DP=11;ExcessHet=3.0103;FS=5.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=-1.247e+00;SOR=3.461;VQSLOD=15.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:460,33,0
chr4	81529380	rs2903671	T	C	5317.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.284e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=-9.400e-02;SOR=0.744;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1695,147,0
chr4	81529518	rs2867782	T	C	11177.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=1.041;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3192,306,0
chr4	81884610	rs11452353	A	AT	5591.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=52;ExcessHet=3.0103;FS=4.359;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.51;ReadPosRankSum=-3.720e-01;SOR=2.792;VQSLOD=6.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1561,154,0
chr4	81884722	rs1052325	G	A	11635.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=128;ExcessHet=3.0103;FS=1.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=1.06;SOR=0.514;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,55:128:99:1283,0,1670
chr4	81967188	rs6831040	C	T	7050.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.56;SOR=0.795;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1993,183,0
chr4	81973163	rs77958746	T	A	306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.900e-02;DB;DP=39;ExcessHet=3.0103;FS=3.041;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=0.298;SOR=0.545;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,13:39:99:315,0,688
chr4	81973224	rs12647814	A	T	4358.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=1.154;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:972,96,0
chr4	81973260	rs1390318	C	T	3649.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.67;SOR=1.247;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:905,87,0
chr4	81973364	rs17005035	C	G	227.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=-5.890e-01;SOR=0.859;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:18:236,0,18
chr4	81974809	rs7661611	T	C	597.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=5.421;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr4	82065566	rs7687935	A	T	334.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.210e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.029;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:343,0,337
chr4	82072961	rs78846696	G	A	290.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=-9.670e-01;SOR=3.056;VQSLOD=19.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:0:299,0,0
chr4	82088478	rs3733551	T	C	79.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.28;ReadPosRankSum=1.09;SOR=0.368;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:88:88,0,403
chr4	82092870	rs17005080	A	G	686.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.513e+00;DB;DP=83;ExcessHet=3.0103;FS=0.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=0.431;SOR=0.522;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:695,0,1427
chr4	82092967	rs9992933	C	T	411.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118e+00;DB;DP=59;ExcessHet=3.0103;FS=1.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.97;ReadPosRankSum=0.146;SOR=0.507;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,19:59:99:420,0,1161
chr4	82366788	rs28560455	C	T	1469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.910e-01;DB;DP=109;ExcessHet=3.0103;FS=2.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.960;SOR=0.462;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,58:109:99:1478,0,1293
chr4	82368633	rs59588994	G	T	370.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199e+00;DB;DP=24;ExcessHet=3.0103;FS=1.748;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.925;SOR=0.387;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:379,0,238
chr4	82369160	rs1077802	C	T	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-02;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=0.517;SOR=0.551;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:567,0,490
chr4	82369205	rs1077803	T	A	936.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.403;SOR=0.627;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,34:62:99:945,0,672
chr4	82369494	rs28409763	G	T	238.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.691e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=-2.330e-01;SOR=1.022;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:247,0,172
chr4	83347266	rs79373393	A	G	974.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-01;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-4.620e-01;SOR=0.786;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,17:37:99:406,0,540
chr4	83348652	rs61729822	T	C	1534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.104;DB;DP=55;ExcessHet=3.9794;FS=14.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.592;SOR=1.674;VQSLOD=12.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,25:55:99:615,0,739
chr4	83350763	rs61737724	G	A	860.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900e-02;DB;DP=20;ExcessHet=3.9794;FS=1.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.00;SOR=0.461;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:319,0,245
chr4	83350954	rs2516817	C	T	84.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=9;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.37;ReadPosRankSum=-8.760e-01;SOR=1.911;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,156
chr4	83352177	rs10646358	C	CTT	9908.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.045e+00;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.05;ReadPosRankSum=-2.200e-02;SOR=0.773;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,102:102:99:4517,309,0
chr4	83369287	rs4285076	A	G	6600.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.367e+00;DB;DP=84;ExcessHet=3.0103;FS=1.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=0.712;SOR=0.544;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,49:84:99:1137,0,892
chr4	83424089	.	T	TA	523.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.950e-01;DP=20;ExcessHet=3.9794;FS=9.125;MQ=60.00;MQRankSum=0.00;QD=9.69;ReadPosRankSum=-6.190e-01;SOR=1.609;VQSLOD=3.19;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,6:20:83:83,0,314
chr4	83483278	rs34938619	C	T	577.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.411e+00;DB;DP=33;ExcessHet=3.0103;FS=8.669;MQ=60.00;MQRankSum=0.00;QD=17.49;ReadPosRankSum=-3.700e-02;SOR=0.057;VQSLOD=19.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:586,0,430
chr4	83483562	rs35866205	C	T	1218.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.496e+00;DB;DP=53;ExcessHet=3.9794;FS=1.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=1.05;SOR=0.406;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:579,0,1024
chr4	83552809	rs3857138	A	C	3575.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.86;DB;DP=36;ExcessHet=3.0103;FS=0.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=-1.400e+00;SOR=0.566;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1261,108,0
chr4	83557467	rs7681697	A	G	200.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=58.67;QD=28.25;SOR=1.981;VQSLOD=3.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	83557605	rs36060565	G	GA	216.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-01;DB;DP=7;ExcessHet=6.9897;FS=1.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.72;ReadPosRankSum=0.00;SOR=0.356;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:7:49:54,0,49
chr4	83582064	rs3733228	G	T	1982.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.943e+00;DB;DP=43;ExcessHet=1.5490;FS=5.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-1.210e-01;SOR=0.307;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,42:43:84:1219,84,0
chr4	83582211	rs3733227	C	G	1702.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.174e+00;DB;DP=29;ExcessHet=3.9794;FS=0.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-1.171e+00;SOR=0.857;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,28:29:43:824,43,0
chr4	83602150	rs2276883	C	T	594.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.862e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=-6.510e-01;SOR=1.329;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:294,27,0
chr4	83626382	rs1876218	C	A	3178.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.280e+00;DB;DP=53;ExcessHet=3.9794;FS=17.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.48;ReadPosRankSum=0.565;SOR=0.167;VQSLOD=12.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1654,158,0
chr4	83626674	rs6853042	G	A	6342.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=1.687;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2329,216,0
chr4	83742336	rs4634209	C	T	3078.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.990e-01;DB;DP=52;ExcessHet=3.9794;FS=2.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=1.01;SOR=0.495;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,25:52:99:647,0,710
chr4	83763809	rs4615165	T	C	832.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.61;ReadPosRankSum=0.00;SOR=3.352;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:153,0,106
chr4	83763857	rs4645207	T	G	325.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.83;ReadPosRankSum=0.00;SOR=3.056;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:75,0,32
chr4	83776301	rs4693056	A	T	1005.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.43;ReadPosRankSum=1.61;SOR=2.765;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:63:63,0,220
chr4	83778378	rs4235054	A	T	1339.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=14;ExcessHet=3.9794;FS=4.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=-7.070e-01;SOR=1.755;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:91:343,0,91
chr4	83778839	rs7658703	T	C	678.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=65;ExcessHet=3.0103;FS=2.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=-2.920e-01;SOR=0.713;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:687,0,872
chr4	83784337	rs7666917	G	A	6570.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.20;SOR=0.704;VQSLOD=19.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1787,150,0
chr4	83787845	rs7356522	G	A	2106.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=2.958;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:798,66,0
chr4	83788139	rs2290739	C	A	1801.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.090e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=0.734;SOR=0.684;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:540,45,0
chr4	83788344	rs2045478	A	T	3259.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.27;SOR=1.633;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:949,93,0
chr4	83788562	rs2045479	T	C	1407.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=33.22;SOR=2.891;VQSLOD=5.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:319,30,0
chr4	83791373	rs10015419	C	T	3255.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.658e+00;DB;DP=37;ExcessHet=3.0103;FS=6.839;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.43;ReadPosRankSum=-1.910e-01;SOR=0.108;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1254,110,0
chr4	83791649	rs3762902	G	T	2491.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=1.44;SOR=1.584;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:68:849,68,0
chr4	83792464	rs10548601	TACAC	TAC,T	6318.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.030e-01;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.06;ReadPosRankSum=0.205;SOR=0.784;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,23,30:53:99:2226,1021,873,771,0,619
chr4	83792498	rs7685043	G	T	6645.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=60;ExcessHet=3.0103;FS=0.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.06;ReadPosRankSum=1.46;SOR=0.775;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2577,181,0
chr4	83792555	rs7686508	C	A	4823.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.34;DB;DP=53;ExcessHet=3.0103;FS=0.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=-1.104e+00;SOR=0.865;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1674,159,0
chr4	83793243	rs4693525	A	C	3590.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.250e-01;DB;DP=32;ExcessHet=3.0103;FS=5.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.27;ReadPosRankSum=-6.330e-01;SOR=0.272;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1121,96,0
chr4	83793354	rs143845447	A	ATTTTG	807.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=38.16;ReadPosRankSum=-7.920e-01;SOR=2.400;VQSLOD=6.40;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:213,15,0
chr4	83793368	rs11942312	C	T	563.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.111e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.84;ReadPosRankSum=-4.310e-01;SOR=1.863;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr4	83795800	.	A	C	614.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.430e-01;DP=56;ExcessHet=3.0103;FS=3.742;MQ=60.00;MQRankSum=0.00;QD=10.97;ReadPosRankSum=-6.890e-01;SOR=0.711;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,27:56:99:0|1:83795800_A_C:623,0,1086:83795800
chr4	83795806	rs10025654	T	C	3685.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=54;ExcessHet=3.9794;FS=3.034;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=0.476;SOR=0.807;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,27:54:99:1|0:83795800_A_C:772,0,1053:83795800
chr4	83796078	rs10025880	T	C	363.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=0.524;SOR=2.147;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:48,6,0
chr4	83800181	rs1531240	A	G	825.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=6.184;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr4	83801849	rs6820324	G	A	241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.712e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=0.450;SOR=0.582;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:250,0,331
chr4	83822334	rs982146	G	A	3509.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=140;ExcessHet=3.9794;FS=0.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.811;SOR=0.775;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,75:140:99:1882,0,1654
chr4	83827822	rs3214025	A	G	817.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-02;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=-3.800e-01;SOR=0.589;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:437,0,384
chr4	83838217	rs1031639	G	A	11167.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.75;SOR=0.759;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2852,275,0
chr4	83838262	rs897945	G	T	6332.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=88;ExcessHet=3.9794;FS=0.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=0.704;SOR=0.752;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,30:88:99:831,0,1515
chr4	83839799	rs6535411	A	G	10310.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=0.956;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2980,258,0
chr4	83849581	rs6535412	A	G	253.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.380e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-5.100e-02;SOR=0.976;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:262,0,205
chr4	83852065	rs985899	G	A	8992.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=2.349;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3154,285,0
chr4	83857108	rs6535413	A	G	3953.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=103;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=-1.000e-02;SOR=0.693;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,58:103:99:0|1:83857108_A_G:2268,0,2442:83857108
chr4	83857109	rs6535414	T	A	3953.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=103;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=0.682;SOR=0.665;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,56:103:99:0|1:83857108_A_G:2268,0,2442:83857108
chr4	83857402	rs6535415	T	C	4085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=0.995;VQSLOD=20.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1291,108,0
chr4	83860527	rs921992	A	G	1280.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=37;ExcessHet=3.9794;FS=1.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=0.072;SOR=0.404;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:488,0,683
chr4	83900043	rs6535422	A	G	7278.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.21;SOR=1.288;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2015,198,0
chr4	83900260	rs7674484	A	G	2217.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.63;SOR=3.841;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:418,33,0
chr4	83905258	rs9994716	C	G	2352.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=25;ExcessHet=3.0103;FS=6.376;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-7.080e-01;SOR=2.044;VQSLOD=4.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:426,0,311
chr4	83956665	rs6535427	A	G	2983.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.49;SOR=3.316;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:930,69,0
chr4	83956700	rs6535428	T	C	2061.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.29;SOR=2.790;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:745,54,0
chr4	83966610	rs4693553	T	C	795.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=6.091;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:242,18,0
chr4	83967059	rs6814011	T	G	798.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.41;SOR=4.712;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr4	83977947	rs2868739	A	G	695.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.77;SOR=3.716;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:188,15,0
chr4	83977975	rs6535432	C	T	1181.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.15;SOR=5.421;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:326,24,0
chr4	83986380	rs10555484	TATTTA	T	1468.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.27;SOR=1.022;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1485,99,0
chr4	83989516	rs2868747	T	C	5923.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=2.485;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1456,129,0
chr4	83989571	rs5859858	G	GT	2445.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.11;SOR=1.356;VQSLOD=4.91;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2462,261,0
chr4	84028838	rs4693563	G	A	1432.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=1.37;SOR=2.078;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:222,0,137
chr4	84188522	rs6855094	G	A	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.30;SOR=2.303;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:84188522_G_A:90,6,0:84188522
chr4	84188524	rs6832955	A	C	80.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=2.303;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:84188522_G_A:90,6,0:84188522
chr4	84189012	rs11448409	G	GT	1165.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=29.90;SOR=3.202;VQSLOD=6.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:53:547,53,0
chr4	84190901	rs6852861	T	C	329.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=4.615;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:221,18,0
chr4	84191031	rs6535454	A	G	2012.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.12;SOR=1.649;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1228,105,0
chr4	84193366	rs6841889	C	T	1688.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=2.494;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1013,90,0
chr4	84205618	rs13113787	A	C	5204.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=49;ExcessHet=3.0103;FS=4.593;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=0.510;SOR=1.347;VQSLOD=6.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1537,147,0
chr4	84205872	rs6818847	C	A	6113.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=1.584;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3437,322,0
chr4	84206004	rs112033303	T	A	2556.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.765;DB;DP=211;ExcessHet=3.0103;FS=2.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=1.86;SOR=0.840;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,104:211:99:2565,0,2583
chr4	84216701	.	C	T	856.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;DP=62;ExcessHet=3.0103;FS=0.979;MQ=60.00;MQRankSum=0.00;QD=13.81;ReadPosRankSum=-7.000e-03;SOR=0.852;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:865,0,604
chr4	84216845	rs4518235	G	A	582.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.03;SOR=4.047;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:255,21,0
chr4	84223461	rs4285078	G	C	4579.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=1.851;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1541,141,0
chr4	84223575	rs4426765	C	A	864.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=-6.740e-01;SOR=4.892;VQSLOD=13.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:378,27,0
chr4	84229897	rs4453925	T	C	1023.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.611e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.13;ReadPosRankSum=0.619;SOR=3.126;VQSLOD=19.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:220,21,0
chr4	84230619	rs11099592	T	C	4726.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.171e+00;DB;DP=51;ExcessHet=3.0103;FS=0.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.916;SOR=0.790;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1622,153,0
chr4	84231513	rs11447474	C	CT	271.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.67;SOR=2.494;VQSLOD=3.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:185,21,0
chr4	84232104	rs6535455	T	C	1122.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.73;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.08;ReadPosRankSum=-1.557e+00;SOR=2.368;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:392,27,0
chr4	84234190	rs6818355	A	G	1206.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=0.00;QD=30.17;ReadPosRankSum=0.480;SOR=2.303;VQSLOD=2.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:388,33,0
chr4	84234229	rs6840520	G	A	2654.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.274;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=3.25;SOR=0.936;VQSLOD=5.64;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1005,93,0
chr4	84240328	rs55826538	A	AC	430.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.135;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.92;ReadPosRankSum=-1.345e+00;SOR=1.609;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:9:118,9,0
chr4	84240654	rs12501123	G	A	3310.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.259;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=1.26;SOR=0.864;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1190,108,0
chr4	84240680	rs12501124	G	T	2608.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.918;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.31;ReadPosRankSum=-4.130e-01;SOR=1.022;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:998,84,0
chr4	84243686	rs7696355	T	C	978.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.61;SOR=6.358;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr4	84376743	rs6831595	A	T	20255.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.78;SOR=1.062;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,200:200:99:6663,601,0
chr4	84458001	rs55833887	A	G	1560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=55;ExcessHet=3.9794;FS=1.837;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=1.32;SOR=1.016;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,25:55:99:646,0,851
chr4	84458028	rs56139069	C	G	1165.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=36;ExcessHet=3.9794;FS=2.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.332;SOR=1.244;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:473,0,525
chr4	84465613	rs10516690	C	T	486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.061;DB;DP=28;ExcessHet=3.9794;FS=1.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.17;ReadPosRankSum=-8.730e-01;SOR=0.407;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:265,0,435
chr4	84465855	rs28360718	A	C	192.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=1.61;SOR=0.770;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:93:93,0,257
chr4	84502602	rs17355321	A	C	690.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=4.294;VQSLOD=20.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:707,51,0
chr4	84503125	rs1717630	A	G	326.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.524;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.69;ReadPosRankSum=1.83;SOR=1.022;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:84503125_A_G:180,12,0:84503125
chr4	84503126	rs1674348	A	C	326.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.69;ReadPosRankSum=1.83;SOR=1.022;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:84503125_A_G:180,12,0:84503125
chr4	84509465	rs11394944	T	TG	10066.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=0.701;VQSLOD=5.55;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3362,253,0
chr4	84515968	rs3733327	C	T	1304.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=1.127;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1321,126,0
chr4	84518315	rs3733328	G	T	229.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=3.912;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	84518558	rs3733329	C	T	854.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.45;SOR=1.460;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:871,87,0
chr4	84519076	rs1379974	A	G	1582.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.428e+00;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=-8.000e-02;SOR=0.796;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:811,69,0
chr4	84519639	rs781434	T	G	509.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=1.39;SOR=1.061;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:381,27,0
chr4	84519775	rs71668661	AT	A	713.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.590e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.40;ReadPosRankSum=1.20;SOR=0.607;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,35:41:31:722,0,31
chr4	84520030	rs62303974	C	T	158.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=1.981;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:174,15,0
chr4	84525973	rs35602893	CT	C	1202.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.86;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=-6.660e-01;SOR=0.593;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:84:871,84,0
chr4	85166020	rs348700	C	T	7057.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.585e+00;DB;DP=141;ExcessHet=1.5490;FS=1.734;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=1.16;SOR=0.859;VQSLOD=6.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,67:141:99:1766,0,2245
chr4	85465390	.	ATT	A,AT	4440.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.300e-01;DP=50;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=28.83;ReadPosRankSum=-3.300e-02;SOR=0.487;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,24,26:50:99:1510,660,592,678,0,537
chr4	85530796	rs17009168	A	C	743.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=15;ExcessHet=3.9794;FS=3.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.112;SOR=0.119;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:261,0,276
chr4	85540814	rs6853486	T	C	187.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=1.07;SOR=3.912;VQSLOD=13.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:50:196,0,50
chr4	85555196	rs13102661	G	A	534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=22;ExcessHet=3.9794;FS=2.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.736;SOR=0.174;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:270,0,437
chr4	85556392	rs11310518	CT	C	75.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=17;ExcessHet=3.9794;FS=5.544;MQ=60.00;MQRankSum=0.00;QD=1.53;ReadPosRankSum=-7.500e-01;SOR=0.193;VQSLOD=4.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,4:17:48:48,0,253
chr4	85560271	rs9784491	G	A	1751.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761e+00;DB;DP=52;ExcessHet=3.9794;FS=7.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.527;SOR=0.287;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,32:52:99:832,0,518
chr4	85611915	rs3833443	AC	A	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=44;ExcessHet=3.0103;FS=1.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.893;SOR=0.412;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,23:44:99:725,0,649
chr4	85625701	rs1838039	A	G	272.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.29;ReadPosRankSum=-1.383e+00;SOR=1.022;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:252,18,0
chr4	85626818	rs2218323	A	G	190.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr4	85634144	rs17009212	C	A	215.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.044e+00;DB;DP=18;ExcessHet=3.0103;FS=4.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=1.32;SOR=0.082;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:224,0,412
chr4	85657280	rs77543638	C	T	534.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.65;MQRankSum=-1.023e+00;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=-3.950e-01;SOR=0.544;VQSLOD=0.587;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,22:47:99:543,0,688
chr4	85658147	rs200364139	TA	T	58.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.470e-01;DB;DP=5;ExcessHet=3.9794;FS=4.523;MQ=60.00;MQRankSum=0.00;QD=3.42;ReadPosRankSum=0.524;SOR=0.061;VQSLOD=4.87;culprit=QD	GT:AD:DP:GQ:PL	0/1:3,2:5:29:29,0,47
chr4	85678426	.	CA	C	273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;DP=14;ExcessHet=3.0103;FS=2.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=-1.272e+00;SOR=1.911;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:282,0,200
chr4	85710822	rs200702938	ACC	A	133.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.34;MQRankSum=0.00;QD=16.66;ReadPosRankSum=0.291;SOR=0.693;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:142,0,156
chr4	85710823	.	C	CA,*	281.03	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.345e+00;DP=8;ExcessHet=1.5490;FS=0.000;MQ=59.71;MQRankSum=0.00;QD=17.56;ReadPosRankSum=-1.150e+00;SOR=2.584;VQSLOD=4.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,4,4:8:99:552,176,151,186,0,156
chr4	85710824	rs13137042	C	*,CA	1613.58	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.85;QD=33.87;SOR=3.516;VQSLOD=5.22;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,4:8:99:552,186,156,176,0,151
chr4	85730914	rs6531775	T	C	400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=16;ExcessHet=3.9794;FS=4.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.708;SOR=1.911;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:205,0,234
chr4	85731541	.	CA	C	43.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.13;ReadPosRankSum=0.504;SOR=0.498;VQSLOD=5.22;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:24:24,0,317
chr4	85731636	rs10516729	A	G	140.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:149,0,63
chr4	85762385	rs2046402	T	C	2431.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DB;DP=97;ExcessHet=3.9794;FS=1.115;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=-8.550e-01;SOR=0.817;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,49:97:99:1149,0,1225
chr4	85765541	rs2869216	T	C	640	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=7;ExcessHet=6.9897;FS=2.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.65;ReadPosRankSum=0.00;SOR=0.321;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:65:65,0,182
chr4	85770794	rs1872321	C	T	550.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.15;SOR=5.421;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr4	86491517	rs34805286	CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT	C	3185.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.60;QD=29.81;SOR=4.834;VQSLOD=4.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:45:640,45,0
chr4	86492018	rs17384463	G	A	802.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.46;SOR=2.494;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:375,33,0
chr4	86643155	rs17010697	A	C	3681.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.07;DB;DP=149;ExcessHet=3.9794;FS=6.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.27;ReadPosRankSum=2.44;SOR=0.962;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:85,64:149:99:1662,0,1928
chr4	86643334	rs343864	G	A	3218.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.227e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.87;ReadPosRankSum=-1.069e+00;SOR=0.736;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:982,75,0
chr4	86643857	rs343863	T	C	695.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.81;SOR=5.670;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr4	86643908	rs343862	T	C	211.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.43;SOR=3.611;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	86844835	rs6824722	A	G	995.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=57;ExcessHet=3.9794;FS=1.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.978;SOR=0.698;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,24:57:99:530,0,867
chr4	86851884	rs13126782	T	G	164.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.144;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.699;SOR=0.269;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:173,0,170
chr4	86852207	rs60002814	AT	A	771.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.558;DB;DP=33;ExcessHet=3.9794;FS=2.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=-1.511e+00;SOR=1.179;VQSLOD=6.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,13:33:99:426,0,699
chr4	86863032	rs12650390	G	A	64.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:73,0,74
chr4	86863467	rs11097083	T	A	1264.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-01;DB;DP=45;ExcessHet=3.9794;FS=1.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=0.253;SOR=0.919;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,26:45:99:648,0,448
chr4	86915848	rs10003909	T	C	3216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=120;ExcessHet=3.9794;FS=2.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-1.720e-01;SOR=0.855;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,68:120:99:1666,0,1248
chr4	86915923	rs11547776	G	A	2292.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.986e+00;DB;DP=103;ExcessHet=3.9794;FS=3.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-3.870e-01;SOR=0.948;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,52:103:99:1345,0,1409
chr4	86921612	rs12505097	C	G	516.49	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=15;ExcessHet=3.0103;FS=18.198;MQ=60.00;MQRankSum=0.00;QD=15.19;ReadPosRankSum=0.166;SOR=2.430;VQSLOD=10.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,13:15:23:324,23,0
chr4	86950144	rs1541998	A	G	98.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-1.006e+00;SOR=0.495;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:107,0,138
chr4	86952590	rs13103861	G	A	1141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=83;ExcessHet=3.0103;FS=4.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-1.509e+00;SOR=0.346;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1150,0,950
chr4	86952648	rs10025882	T	C	914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.102e+00;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=0.150;SOR=0.699;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,43:88:99:923,0,1052
chr4	86952687	rs9307014	C	G	791.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.137e+00;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-3.310e-01;SOR=0.693;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,34:68:99:800,0,870
chr4	86952751	rs10516763	T	C	325.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.389e+00;DB;DP=30;ExcessHet=3.0103;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=1.11;SOR=1.112;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:334,0,514
chr4	87010637	rs139887286	TAAC	T	234.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=0.328;SOR=0.446;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	87019904	rs4133139	G	A	1586.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.200e-01;DB;DP=26;ExcessHet=1.5490;FS=4.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=0.025;SOR=1.244;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:893,78,0
chr4	87024228	rs72082497	C	CTGTGTGTGTG,CTGTGTGTG	3129.18	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.127e+00;DB;DP=32;ExcessHet=3.0103;FS=1.066;MQ=59.08;MQRankSum=-7.540e-01;QD=29.52;ReadPosRankSum=-1.065e+00;SOR=0.976;VQSLOD=0.453;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,9,16:32:99:1222,484,402,241,0,138
chr4	87115217	.	C	T	247.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DP=11;ExcessHet=3.9794;FS=10.607;MQ=54.93;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=-1.456e+00;SOR=1.739;VQSLOD=-2.716e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:57:0|1:87115217_C_T:57,0,742:87115217
chr4	87115218	.	T	C	247.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DP=11;ExcessHet=3.9794;FS=15.836;MQ=54.73;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-1.411e+00;SOR=2.526;VQSLOD=-4.103e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:57:0|1:87115217_C_T:57,0,742:87115217
chr4	87115219	.	G	A	247.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DP=11;ExcessHet=3.9794;FS=15.836;MQ=54.73;MQRankSum=-2.362e+00;NEGATIVE_TRAIN_SITE;QD=9.51;ReadPosRankSum=-1.411e+00;SOR=2.526;VQSLOD=-4.103e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,2:11:57:0|1:87115217_C_T:57,0,742:87115217
chr4	87463813	rs4529013	G	A	500.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.885;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-3.090e-01;SOR=0.784;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,20:39:99:509,0,447
chr4	87463933	rs72665744	C	T	172.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.065e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.00;SOR=0.551;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:181,0,225
chr4	87637658	rs181468750	A	G	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=58;ExcessHet=3.0103;FS=1.073;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.912;SOR=0.520;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:733,0,819
chr4	87638342	rs35080587	A	AT	160.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.860e-01;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;QD=14.61;ReadPosRankSum=-3.490e-01;SOR=2.636;VQSLOD=4.73;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:87638342_A_AT:169,0,226:87638342
chr4	87638364	rs4263359	C	T	144.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=9;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=0.936;SOR=2.712;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:0|1:87638342_A_AT:153,0,223:87638342
chr4	87643746	rs67867077	G	A	60.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:69,0,68
chr4	87656159	rs7699564	G	A	269.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e+00;DB;DP=13;ExcessHet=3.9794;FS=2.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.15;ReadPosRankSum=-5.420e-01;SOR=0.173;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,2:13:10:10,0,375
chr4	87674518	rs10019950	G	A	87.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:96:96,0,107
chr4	87679642	rs1420624	A	C	3365.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=66;ExcessHet=6.9897;FS=0.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-4.170e-01;SOR=0.765;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,41:66:99:1229,0,613
chr4	87684031	rs710832	A	G	7282.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=123;ExcessHet=3.9794;FS=0.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=1.03;SOR=0.646;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,63:123:99:1624,0,1385
chr4	87690998	rs2230600	A	G	975.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.97;DB;DP=80;ExcessHet=3.0103;FS=6.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=0.479;SOR=1.470;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,33:80:99:984,0,1046
chr4	87706506	rs989902	T	G	1296.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=49;ExcessHet=3.9794;FS=2.542;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.770;SOR=0.868;VQSLOD=6.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,23:49:99:610,0,632
chr4	87728676	rs17694112	A	C	855.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=79;ExcessHet=3.0103;FS=3.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=1.78;SOR=0.389;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,35:79:99:864,0,1081
chr4	87731238	rs11930396	G	A	292.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.17;ReadPosRankSum=0.707;SOR=0.412;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:85:85,0,277
chr4	87754419	rs10050311	C	T	1539.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.636e+00;DB;DP=54;ExcessHet=3.9794;FS=7.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=-4.290e-01;SOR=0.246;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,37:54:99:895,0,394
chr4	87754713	rs7678571	G	A	989.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=29;ExcessHet=3.9794;FS=2.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.924;SOR=0.353;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:435,0,296
chr4	87769661	rs6531936	G	A	1162.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.62;SOR=3.126;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:373,33,0
chr4	87769694	rs6531937	A	C	1913.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=36.01;ReadPosRankSum=-3.060e-01;SOR=1.536;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:770,63,0
chr4	87808810	rs3035472	G	GCA	3394.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=55;ExcessHet=1.5490;FS=7.306;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-7.530e-01;SOR=1.498;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:36,19:55:99:686,0,1481
chr4	87809387	rs1550931	G	T	11018.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=1.024;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3910,380,0
chr4	87812564	rs10011798	G	C	2038.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=39;ExcessHet=1.5490;FS=2.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=-1.431e+00;SOR=1.179;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,13:39:99:359,0,646
chr4	87812586	rs55723875	TA	T	5752.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=2.123;VQSLOD=5.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1595,174,0
chr4	87812810	rs35305216	G	GA	2429.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DB;DP=56;ExcessHet=1.5490;FS=3.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=0.783;SOR=1.159;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,25:56:99:593,0,765
chr4	88016289	rs236687	A	C	482.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.623e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.95;ReadPosRankSum=-5.590e-01;SOR=1.721;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:275,24,0
chr4	88036116	rs148578175	G	A	2130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.530e-01;DB;DP=193;ExcessHet=3.0103;FS=6.131;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.754;SOR=0.586;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,82:193:99:2139,0,3139
chr4	88048163	rs11448202	A	AT	4180.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.352e+00;DB;DP=100;ExcessHet=1.5490;FS=4.947;MQ=60.00;MQRankSum=0.00;QD=20.10;ReadPosRankSum=-7.310e-01;SOR=0.414;VQSLOD=5.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,98:100:99:2792,307,0
chr4	88048315	rs112686186	GC	G	55.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.750e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.51;ReadPosRankSum=-3.530e-01;SOR=0.818;VQSLOD=6.62;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,5:22:64:0|1:88048315_GC_G:64,0,464:88048315
chr4	88048316	rs11351193	C	T,*	583.52	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.640e-01;DB;DP=22;ExcessHet=3.9794;FS=40.824;MQ=60.00;MQRankSum=0.00;QD=4.52;ReadPosRankSum=0.857;SOR=4.514;VQSLOD=-9.367e-01;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,15,5:22:48:1170,48,83,318,0,335
chr4	88048318	rs28700060	T	C	582.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=23;ExcessHet=6.9897;FS=28.964;MQ=60.00;MQRankSum=0.00;QD=4.66;ReadPosRankSum=0.843;SOR=3.862;VQSLOD=5.90;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,16:23:99:1|0:88048315_GC_G:334,0,212:88048315
chr4	88048328	rs112453934	A	C	1591.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.22;DB;DP=25;ExcessHet=6.9897;FS=31.216;MQ=60.00;MQRankSum=0.00;QD=13.84;ReadPosRankSum=0.953;SOR=4.083;VQSLOD=4.84;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,23:25:49:0|1:88048315_GC_G:985,0,49:88048315
chr4	88052219	rs342467	T	C	3382.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.582;DB;DP=53;ExcessHet=3.9794;FS=0.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.859;SOR=0.734;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1589,159,0
chr4	88053085	rs342466	C	T	2342.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=0.055;SOR=0.656;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1216,108,0
chr4	88056002	rs2307787	TTG	T	681.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=1.04;SOR=3.500;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:578,39,0
chr4	88056719	rs56703224	GT	G	3378.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=60;ExcessHet=3.9794;FS=1.425;MQ=60.00;MQRankSum=0.00;QD=19.99;ReadPosRankSum=0.355;SOR=0.885;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1828,180,0
chr4	88056925	rs342464	A	G	6608.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=1.195;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1844,186,0
chr4	88222065	rs4271972	A	G	874.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.46;SOR=6.273;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr4	88226231	rs11735092	T	C	1078.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=26;ExcessHet=1.5490;FS=1.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=-5.180e-01;SOR=1.230;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,6:26:99:163,0,628
chr4	88226480	rs6850131	A	C	1921.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.96;ReadPosRankSum=1.59;SOR=0.623;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:432,0,233
chr4	88226572	rs6850509	C	T	546.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=0.842;SOR=1.051;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:153,0,67
chr4	88231338	rs148307323	G	GA	1501.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.848;DB;DP=22;ExcessHet=6.9897;FS=12.109;MQ=60.00;MQRankSum=0.00;QD=16.51;ReadPosRankSum=0.742;SOR=1.931;VQSLOD=1.54;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,7:22:99:1|0:88231324_TA_T:220,0,714:88231324
chr4	88231339	rs74802974	C	A	2111.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DB;DP=22;ExcessHet=3.9794;FS=14.584;MQ=60.00;MQRankSum=0.00;QD=22.47;ReadPosRankSum=0.672;SOR=2.100;VQSLOD=11.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,7:22:99:1|0:88231324_TA_T:220,0,714:88231324
chr4	88231429	rs62305723	G	A	886.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=37;ExcessHet=3.9794;FS=2.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-1.273e+00;SOR=0.451;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,12:37:99:284,0,620
chr4	88234874	rs7698974	C	T	1218.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=-7.410e-01;SOR=0.562;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:67:141,0,67
chr4	88238448	rs6531975	A	G	3445.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=0.348;SOR=0.636;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:534,0,858
chr4	88258483	rs9991501	T	C	4295.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=1.284;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1468,141,0
chr4	88293745	rs6849846	A	G	1276.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=-2.450e-01;SOR=1.009;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:217,0,306
chr4	88293887	rs6531985	G	A	3244.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.746;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=0.144;SOR=0.694;VQSLOD=2.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,18:54:99:434,0,990
chr4	88293992	rs11375790	G	GA	1415.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=19;ExcessHet=3.9794;FS=7.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=1.67;SOR=0.080;VQSLOD=5.29;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,9:19:99:221,0,255
chr4	88295786	rs62319101	A	G	2696.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=-1.108e+00;SOR=0.677;VQSLOD=6.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,22:45:99:619,0,606
chr4	88312251	rs368478743	G	GT	656.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.14;ReadPosRankSum=-5.850e-01;SOR=0.634;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,16:30:99:288,0,255
chr4	88531867	rs2736980	C	T	171.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:106,0,30
chr4	88532182	rs376870996	AGTGT	AGTGTGT,A	1540.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.59;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.55;ReadPosRankSum=0.00;SOR=2.448;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,8,5:15:99:356,145,178,177,0,396
chr4	88533163	rs35939827	TTGTGTGTG	T	1660.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=10;ExcessHet=3.0103;FS=2.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=-4.640e-01;SOR=2.004;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:150,0,325
chr4	88533441	rs13131929	T	C	5906.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=55;ExcessHet=3.9794;FS=3.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=0.119;SOR=0.507;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,32:55:99:0|1:88533441_T_C:1303,0,1343:88533441
chr4	88533445	rs13131936	T	C	2547.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=56;ExcessHet=3.9794;FS=3.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.94;ReadPosRankSum=-2.600e-02;SOR=0.446;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,32:56:99:0|1:88533441_T_C:1300,0,1364:88533441
chr4	88534235	rs2736982	A	G	3727.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.290e-01;DB;DP=29;ExcessHet=3.0103;FS=1.007;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=0.00;SOR=0.537;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,13:29:99:354,0,465
chr4	88537420	rs112989710	C	T	2391.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.478e+00;DB;DP=27;ExcessHet=3.0103;FS=5.482;MQ=60.00;MQRankSum=0.00;QD=30.66;ReadPosRankSum=0.074;SOR=1.917;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:259,0,486
chr4	88537737	rs2615489	G	A	8302.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=75;ExcessHet=3.0103;FS=2.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=-5.990e-01;SOR=1.050;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,36:75:99:1023,0,1008
chr4	88577573	rs2615480	A	G	7974.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.930e-01;DB;DP=69;ExcessHet=3.0103;FS=2.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.79;ReadPosRankSum=0.878;SOR=0.950;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,30:69:99:741,0,1192
chr4	88578310	rs2615479	A	G	1128.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.957e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.88;ReadPosRankSum=-4.440e-01;SOR=1.007;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:89:154,0,89
chr4	88584148	rs2615498	C	T	8754.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DB;DP=143;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=0.144;SOR=0.697;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:66,77:143:99:0|1:88584148_C_T:2987,0,3814:88584148
chr4	88584160	rs2615497	G	A	9992.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230e+00;DB;DP=144;ExcessHet=3.9794;FS=1.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.38;ReadPosRankSum=-2.520e-01;SOR=0.778;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,77:144:99:0|1:88584148_C_T:3014,0,3880:88584148
chr4	88584507	rs2627724	G	A	2044.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.570e-01;DB;DP=38;ExcessHet=3.9794;FS=3.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=1.15;SOR=0.437;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,15:38:99:355,0,689
chr4	88732453	rs4693183	C	T	265.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=-3.280e-01;SOR=0.593;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:68:68,0,137
chr4	88732531	rs4693878	T	C	1367.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660e-01;DB;DP=28;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=-1.914e+00;SOR=0.960;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:380,0,430
chr4	88732692	rs1054627	G	A	1824.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-02;DB;DP=84;ExcessHet=3.9794;FS=0.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=0.296;SOR=0.615;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,39:84:99:895,0,1272
chr4	88732746	rs13144371	A	G	4121.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.330e-01;DB;DP=97;ExcessHet=1.5490;FS=5.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=0.665;SOR=0.393;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,46:97:99:1128,0,1418
chr4	88732918	rs1054629	A	T	3093.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=129;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=1.74;SOR=0.694;VQSLOD=6.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,63:129:99:1501,0,1782
chr4	88755828	rs7698623	T	C	4215.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=60;ExcessHet=3.9794;FS=1.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=1.59;SOR=0.834;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,21:60:99:405,0,975
chr4	88760708	.	T	C	141.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.18;ReadPosRankSum=0.328;SOR=0.941;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:98:150,0,98
chr4	88766969	rs61731014	A	G	645.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=61;ExcessHet=3.0103;FS=2.213;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-7.680e-01;SOR=1.058;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,24:61:99:654,0,1026
chr4	88812784	rs4550881	A	C	358.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=0.180;SOR=2.147;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:145,0,24
chr4	88813503	rs6532031	T	C	9022.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=217;ExcessHet=1.5490;FS=0.000;MQ=59.98;MQRankSum=0.908;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=0.945;SOR=0.705;VQSLOD=2.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:120,97:217:99:2571,0,2997
chr4	88813875	rs3828554	T	C	1579.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=74;ExcessHet=3.9794;FS=12.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=0.615;SOR=0.487;VQSLOD=17.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,32:74:99:690,0,1242
chr4	88815439	rs3061164	C	CA	383.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=59.79;MQRankSum=0.00;QD=7.99;ReadPosRankSum=-2.640e-01;SOR=0.592;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:22:94:94,0,214
chr4	88898941	rs11728697	C	T	1514.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930e-01;DB;DP=46;ExcessHet=6.9897;FS=4.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.211;SOR=1.143;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:522,0,762
chr4	88928968	rs1805044	G	C	1942.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-02;DB;DP=58;ExcessHet=3.9794;FS=3.200;MQ=60.00;MQRankSum=0.00;QD=13.87;ReadPosRankSum=0.641;SOR=1.043;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,31:58:99:792,0,677
chr4	88957562	rs17786456	T	C	198.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=-3.190e-01;SOR=1.230;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:54:54,0,216
chr4	88959381	rs2725221	G	A	2983.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.457e+00;DB;DP=42;ExcessHet=3.0103;FS=1.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.69;ReadPosRankSum=0.261;SOR=0.529;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1353,125,0
chr4	88973006	rs2728104	T	C	69.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.79;SOR=2.303;VQSLOD=19.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	88973427	rs2725210	A	G	59.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,109
chr4	88973444	rs70957296	AG	A	393.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=0.00;SOR=0.610;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:53:125,0,53
chr4	88986745	rs111465406	CT	C	212.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.744;DB;DP=19;ExcessHet=3.9794;FS=3.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.30;ReadPosRankSum=0.582;SOR=1.247;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:19:99:207,0,117
chr4	88987114	.	A	G	420.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.333e+00;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.01;ReadPosRankSum=0.999;SOR=0.560;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:429,0,392
chr4	88995795	rs2725203	T	C	129.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.358e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=-3.240e-01;SOR=0.527;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:138,0,187
chr4	89015857	rs2231164	C	T	3586.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.250e-01;DB;DP=54;ExcessHet=3.9794;FS=0.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=-8.570e-01;SOR=0.617;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:772,0,576
chr4	89016782	rs2231162	A	G	3682.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=38;ExcessHet=3.9794;FS=2.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=-8.810e-01;SOR=0.481;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,17:38:99:432,0,579
chr4	89022362	rs2231153	C	T	2124.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=18;ExcessHet=3.9794;FS=2.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=-9.760e-01;SOR=1.131;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,13:18:99:389,0,120
chr4	89028478	rs2231148	T	A	1271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=30;ExcessHet=3.9794;FS=2.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.13;ReadPosRankSum=0.146;SOR=0.923;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:445,0,338
chr4	89028544	rs41282399	A	C	476.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970e-01;DB;DP=41;ExcessHet=3.0103;FS=1.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-2.350e-01;SOR=1.013;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:485,0,544
chr4	89034231	rs2622622	C	G	193.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=-5.980e-01;SOR=1.179;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	89036353	rs2725261	C	T	1021.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-9.930e-01;SOR=0.639;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:286,0,200
chr4	89060751	rs2725253	C	T	490.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=2.303;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr4	89060777	rs2622617	G	A	922.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=3.352;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:299,24,0
chr4	89079994	rs2231135	A	G	152.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696e+00;DB;DP=16;ExcessHet=3.0103;FS=2.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-7.590e-01;SOR=0.269;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:161,0,343
chr4	89080270	rs57327643	CAAACACT	C	3106.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.028e+00;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=-1.370e+00;SOR=0.704;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:77,80:157:99:3115,0,2972
chr4	89080351	rs2231134	C	G	2289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=174;ExcessHet=3.0103;FS=1.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.24;SOR=0.799;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,83:174:99:2298,0,2288
chr4	89300241	rs61978650	C	A	2514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-01;DB;DP=86;ExcessHet=3.9794;FS=1.959;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=1.08;SOR=0.855;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,48:86:99:1205,0,905
chr4	89304678	rs28628006	A	G	390.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=0.619;SOR=0.321;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:61:61,0,228
chr4	89304772	rs4498108	G	A	76.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.49;SOR=2.303;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr4	89306506	rs2582038	A	G	468.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.42;SOR=4.977;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr4	89311962	rs12510688	T	C	1261.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-8.850e-01;SOR=0.710;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,55:114:99:1270,0,1305
chr4	89400435	rs376253040	CA	C	235.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=22;ExcessHet=3.9794;FS=4.715;MQ=60.00;MQRankSum=0.00;QD=9.06;ReadPosRankSum=0.993;SOR=2.004;VQSLOD=4.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:22:99:148,0,160
chr4	89415396	rs6857425	T	C	6477.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=0.944;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1829,189,0
chr4	89527323	rs17799056	G	A	387.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.9794;FS=3.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=0.295;SOR=1.911;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:63:63,0,228
chr4	89571260	rs2860420	A	G	2302.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=0.418;SOR=0.654;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:599,0,401
chr4	89575324	rs2860427	T	A	8497.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=123;ExcessHet=3.0103;FS=1.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=0.135;SOR=0.818;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,48:123:99:1070,0,1747
chr4	89576581	rs2282593	C	T	1344.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.410e-01;DB;DP=16;ExcessHet=6.9897;FS=1.235;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=-1.890e-01;SOR=0.486;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:213,0,269
chr4	89577214	rs2972040	A	T	3934.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=73;ExcessHet=3.9794;FS=5.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=1.41;SOR=1.152;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,35:73:99:942,0,1014
chr4	89585235	rs2972018	A	G	5595.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=126;ExcessHet=3.9794;FS=3.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=2.29;SOR=0.879;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,46:126:99:1127,0,2012
chr4	89588689	rs3017921	C	T	2486.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=34;ExcessHet=3.9794;FS=0.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=0.681;SOR=0.887;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,23:34:99:580,0,262
chr4	89599421	rs2604227	A	C	6321.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.27;SOR=2.262;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1706,141,0
chr4	89599570	rs3017919	G	A	584.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.060;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.23;ReadPosRankSum=-1.981e+00;SOR=2.093;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	89602244	rs2298736	G	A	453.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=1.01;SOR=0.569;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,14:21:99:462,0,250
chr4	89607905	rs3737488	A	G	3797.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=87;ExcessHet=6.9897;FS=1.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-9.060e-01;SOR=0.596;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,47:87:99:1210,0,984
chr4	89608225	rs3737487	C	T	744.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=7;ExcessHet=6.9897;FS=7.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.62;ReadPosRankSum=1.01;SOR=2.115;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,143
chr4	89618837	rs710834	T	C	6931.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.180e-01;DB;DP=85;ExcessHet=3.0103;FS=3.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=-1.610e+00;SOR=1.029;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2688,255,0
chr4	89625427	rs1804080	G	C	4016.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=-6.310e-01;SOR=0.705;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,35:58:99:1022,0,571
chr4	89625517	rs144225858	C	A	357.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.985e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-9.200e-01;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:366,0,399
chr4	89625646	rs147444551	C	CT	683.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230e-01;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-6.030e-01;SOR=0.783;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,27:48:99:692,0,510
chr4	89625921	rs4084599	A	G	329.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=0.00;SOR=1.473;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:115,0,64
chr4	89649659	rs9224	A	G	2337.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647e+00;DB;DP=13;ExcessHet=3.0103;FS=2.367;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=-1.071e+00;SOR=0.390;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:235,0,157
chr4	89653010	rs2924940	A	T	704.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.61;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=0.187;SOR=1.981;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,99
chr4	89653257	rs1801915	G	A	4945.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.202;DB;DP=96;ExcessHet=3.9794;FS=3.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.94;ReadPosRankSum=-7.120e-01;SOR=0.755;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,37:96:99:813,0,1496
chr4	89668859	rs7657817	C	T	9726.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.930e-01;DB;DP=123;ExcessHet=3.0103;FS=2.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=-1.279e+00;SOR=0.897;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,59:123:99:1346,0,1636
chr4	89669110	rs7658690	G	A	1573.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.74;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.71;ReadPosRankSum=-8.400e-02;SOR=1.911;VQSLOD=5.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:89669110_G_A:283,0,285:89669110
chr4	89669115	rs7658214	A	G	1573.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.72;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.96;ReadPosRankSum=0.712;SOR=2.584;VQSLOD=0.900;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,6:10:99:0|1:89669110_G_A:283,0,285:89669110
chr4	89669928	rs3822077	G	A	341.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=0.00;SOR=3.442;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:70,0,36
chr4	89670155	rs3756050	C	T	7284.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DB;DP=97;ExcessHet=3.0103;FS=3.381;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=0.257;SOR=0.964;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,40:97:99:940,0,1431
chr4	89671171	rs2278876	T	C	660.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.77;ReadPosRankSum=-2.100e-01;SOR=3.056;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:19:171,0,19
chr4	89671810	rs3217628	A	AGG	9136.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.66;DB;DP=58;ExcessHet=3.0103;FS=4.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.91;ReadPosRankSum=0.406;SOR=3.163;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,31:58:99:1292,0,1182
chr4	89689354	rs3756049	A	G	805.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.690e-01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=-1.769e+00;SOR=0.966;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:459,33,0
chr4	89702564	rs2290784	C	G	276.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=11;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=-1.760e-01;SOR=2.093;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:63:285,0,63
chr4	89702618	rs2290783	A	T	475.97	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.29;ReadPosRankSum=1.47;SOR=2.303;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:256,18,0
chr4	89711849	rs2290782	T	C	2404.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.931e+00;DB;DP=39;ExcessHet=1.5490;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=-1.839e+00;SOR=0.776;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:89711849_T_C:1755,117,0:89711849
chr4	89711854	rs2290781	C	T	1812.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=0.892;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:89711849_T_C:1829,126,0:89711849
chr4	89725862	rs34522375	G	GAT	240.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=3.611;VQSLOD=6.47;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:18:257,18,0
chr4	89726073	rs3822075	T	A	2502.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=0.693;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2519,252,0
chr4	89726283	rs2276936	A	C	346.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=3.056;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:363,27,0
chr4	89912464	rs6834787	C	T	67.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=2.303;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr4	89941414	rs34554002	GT	G	152.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=59.45;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=2.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:89941414_GT_G:90,6,0:89941414
chr4	89941416	rs114554590	T	G	152.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=59.45;MQRankSum=0.524;QD=21.73;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=-3.152e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:89941414_GT_G:90,6,0:89941414
chr4	89941431	rs374510433	C	CT	60.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=59.51;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=7.61;ReadPosRankSum=1.65;SOR=0.148;VQSLOD=1.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,2:3:2:40,2,0
chr4	90034030	rs17015025	G	A	96.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-2.310e-01;SOR=1.609;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:105,0,154
chr4	90035549	rs2280099	A	G	992.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.126e+00;DB;DP=79;ExcessHet=3.0103;FS=4.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.216;SOR=0.325;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,41:79:99:1001,0,1083
chr4	90743331	rs10005233	C	T	937.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-3.880e-01;SOR=0.758;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:535,0,558
chr4	90756550	rs7681440	C	G	1171.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.655e+00;DB;DP=42;ExcessHet=3.9794;FS=11.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.758;SOR=0.071;VQSLOD=17.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:587,0,672
chr4	90816023	rs1442140	A	G	121.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.12;ReadPosRankSum=1.24;SOR=0.602;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:65:65,0,189
chr4	90816790	rs2289515	T	A	486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.360e-01;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=1.43;SOR=0.876;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:221,0,479
chr4	90833421	rs10011790	A	G	53.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.410e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,141
chr4	90855932	rs1038140	T	C	614.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.434e+00;DB;DP=19;ExcessHet=3.9794;FS=6.149;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-2.190e-01;SOR=0.116;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:250,0,368
chr4	90874095	rs3832297	A	AC	4224.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.63;SOR=2.325;VQSLOD=4.94;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2359,181,0
chr4	91229313	rs76951353	C	T	60.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.11;ReadPosRankSum=-1.383e+00;SOR=2.303;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:69,0,67
chr4	91229430	rs28592243	T	G	408.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DB;DP=26;ExcessHet=3.0103;FS=1.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-1.648e+00;SOR=0.307;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:417,0,350
chr4	91230416	rs35057072	G	A	1151.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=90;ExcessHet=3.0103;FS=1.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.070e+00;SOR=0.473;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1160,0,1153
chr4	91246656	rs1870795	C	T	1902.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=36;ExcessHet=1.5490;FS=2.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=0.049;SOR=1.259;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,22:36:99:653,0,310
chr4	91246905	rs9284586	C	G	2303.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=3.258;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:640,54,0
chr4	91246916	rs9284587	G	A	2062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=4.615;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:530,42,0
chr4	91584811	rs6842658	A	T	466.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-1.173e+00;SOR=1.329;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,144
chr4	91584992	rs6842926	A	G	2442.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.668;DB;DP=64;ExcessHet=6.9897;FS=1.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=0.401;SOR=0.649;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,27:64:99:560,0,890
chr4	91585060	rs6843110	A	T	1939.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=48;ExcessHet=6.9897;FS=1.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-2.380e-01;SOR=0.837;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,12:48:99:295,0,876
chr4	91832609	rs6855137	G	C	6250.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=77;ExcessHet=3.0103;FS=0.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.67;ReadPosRankSum=1.23;SOR=0.850;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,32:77:99:1011,0,1252
chr4	91832775	rs10212805	G	C	899.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.33;MQRankSum=-5.660e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.74;ReadPosRankSum=0.00;SOR=2.066;VQSLOD=-5.640e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:158,0,105
chr4	92240031	rs9999729	C	G	2627.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-1.706e+00;SOR=0.735;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1047,87,0
chr4	92240080	rs9999885	G	A	4599.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.312;DB;DP=55;ExcessHet=3.0103;FS=2.421;MQ=59.89;MQRankSum=-1.187e+00;POSITIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=-5.370e-01;SOR=0.982;VQSLOD=2.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1632,163,0
chr4	92240278	rs7653977	A	T	2944.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=26;ExcessHet=3.0103;FS=2.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=-6.210e-01;SOR=1.290;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:912,78,0
chr4	92240317	rs7683541	T	C	1886.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=16;ExcessHet=3.0103;FS=2.373;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.43;ReadPosRankSum=1.35;SOR=0.214;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:669,48,0
chr4	92240335	.	GC	G	57.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;QD=7.16;ReadPosRankSum=-6.190e-01;SOR=0.020;VQSLOD=4.46;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:92240335_GC_G:66,0,246:92240335
chr4	92240337	.	T	A	57.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;QD=7.16;ReadPosRankSum=-6.190e-01;SOR=0.020;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:92240335_GC_G:66,0,246:92240335
chr4	92240679	rs7659326	A	T	1174.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.722e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=-1.063e+00;SOR=3.086;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:519,39,0
chr4	92240802	rs6532289	C	T	6175.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.159e+00;DB;DP=68;ExcessHet=3.0103;FS=2.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=-1.903e+00;SOR=0.493;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2131,204,0
chr4	92240892	rs6816636	C	A	7708.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.561e+00;DB;DP=86;ExcessHet=3.0103;FS=2.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=-1.540e-01;SOR=0.499;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2675,258,0
chr4	92240925	rs6532290	T	G	6386.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.616e+00;DB;DP=69;ExcessHet=3.0103;FS=2.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=-1.711e+00;SOR=0.762;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2134,207,0
chr4	92241031	rs6817404	G	T	3989.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.96;ReadPosRankSum=-3.110e-01;SOR=0.783;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1319,116,0
chr4	92241071	rs6816883	A	G	3002.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=31;ExcessHet=3.0103;FS=5.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.87;ReadPosRankSum=-1.666e+00;SOR=0.227;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1113,93,0
chr4	92246344	rs3762827	G	A	5778.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.810e-01;DB;DP=78;ExcessHet=3.0103;FS=3.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=-1.823e+00;SOR=0.707;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2249,233,0
chr4	92246541	rs1528572	T	A	1317.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.92;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=0.447;SOR=4.804;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:300,21,0
chr4	93511481	rs2870639	G	A	420.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-3.800e-02;SOR=1.154;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,13:32:99:429,0,619
chr4	94032125	rs2271385	G	C	3162.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.027e+00;DB;DP=81;ExcessHet=6.9897;FS=0.971;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=-1.068e+00;SOR=0.630;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,46:81:99:1147,0,919
chr4	94032300	rs3857063	T	C	376.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.524;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:117,0,61
chr4	94128306	rs10004994	C	T	333.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:71,0,65
chr4	94128432	rs111838576	TTGAG	T	1058.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=28;ExcessHet=3.9794;FS=3.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=0.744;SOR=2.127;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,13:28:99:501,0,792
chr4	94159462	rs72666942	G	A	129.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.633e+00;DB;DP=13;ExcessHet=3.0103;FS=2.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.94;ReadPosRankSum=-2.770e-01;SOR=0.204;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:138,0,222
chr4	94159658	rs17020286	T	C	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.610e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.60;ReadPosRankSum=-1.319e+00;SOR=0.877;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:241,0,448
chr4	94180159	rs7687990	A	G	4098.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=1.591;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1095,105,0
chr4	94316763	rs1385405	T	G	17209.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=0.805;VQSLOD=20.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4358,417,0
chr4	94376675	rs6819866	A	T	531.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.63;MQRankSum=1.74;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=1.49;SOR=1.426;VQSLOD=0.724;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:11:99:207,0,138
chr4	94411606	rs2870710	G	C	1370.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.37;SOR=7.054;VQSLOD=24.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr4	95130025	rs183993	G	A	502.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.273e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.86;ReadPosRankSum=-6.100e-02;SOR=0.330;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:302,27,0
chr4	95134165	rs10433970	C	G	4013.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.330e-01;DB;DP=88;ExcessHet=1.5490;FS=0.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=0.160;SOR=0.687;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2761,264,0
chr4	95147553	rs34491534	C	CT	516.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=0.00;SOR=3.690;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:105,12,0
chr4	95161996	rs2306803	C	T	1134.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=0.984;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1151,111,0
chr4	95169682	rs10034781	G	T	7156.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=1.322;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3557,333,0
chr4	95169772	rs7435106	T	A	1490.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.175e+00;DB;DP=33;ExcessHet=1.5490;FS=3.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=0.917;SOR=0.273;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1039,99,0
chr4	95170839	rs11722476	G	A	2491.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.581;DB;DP=58;ExcessHet=1.5490;FS=0.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.96;ReadPosRankSum=0.451;SOR=0.846;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1871,174,0
chr4	95173779	rs7439869	T	C	2414.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=1.852;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:858,81,0
chr4	95186055	rs2306802	A	G	1570.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=1.565;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1587,153,0
chr4	95197520	rs6823404	C	T	3309.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.590e-01;DB;DP=80;ExcessHet=1.5490;FS=2.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=-1.854e+00;SOR=0.914;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2324,239,0
chr4	95199479	rs35670996	C	G	1015.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=12;ExcessHet=1.5490;FS=2.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=1.88;SOR=0.263;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:519,36,0
chr4	95201723	.	G	GTGTTT	1737.14	PASS	AC=2;AF=1.00;AN=2;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.49;SOR=2.073;VQSLOD=4.51;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1754,117,0
chr4	95202492	rs35361491	G	A	1109.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.486e+00;DB;DP=21;ExcessHet=1.5490;FS=7.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=0.087;SOR=0.069;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:61:694,61,0
chr4	95206252	rs111828975	TTATC	T	4781.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DB;DP=74;ExcessHet=1.5490;FS=1.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.40;ReadPosRankSum=-4.700e-02;SOR=1.004;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3252,223,0
chr4	95255637	rs2289186	T	G	4285.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=44;ExcessHet=3.9794;FS=0.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.04;ReadPosRankSum=0.074;SOR=0.628;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:687,0,498
chr4	95255941	rs79911406	C	G	52.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,156
chr4	95497436	rs74969077	TG	T	143.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=3.258;VQSLOD=6.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr4	95503670	rs3857212	G	T	2066.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.00;SOR=6.518;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:531,42,0
chr4	95503902	rs5013417	T	C	3437.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.123e+00;DB;DP=116;ExcessHet=0.4576;FS=3.001;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.63;ReadPosRankSum=0.499;SOR=0.146;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,114:116:99:3454,268,0
chr4	95505975	rs12639887	C	T	366.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=3.442;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:383,33,0
chr4	95508108	.	CTT	C	579.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608e+00;DP=42;ExcessHet=6.9897;FS=6.666;MQ=59.86;MQRankSum=0.00;QD=7.15;ReadPosRankSum=-5.900e-02;SOR=0.301;VQSLOD=4.43;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,12:42:99:406,0,290
chr4	95508434	rs5860368	C	CA	60.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.29;SOR=1.179;VQSLOD=3.48;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:74,9,0
chr4	95529430	rs10033359	C	T	1980.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.55;SOR=5.549;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:326,24,0
chr4	95529444	rs9307146	C	A	1627.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=6.043;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr4	95529534	rs10011209	A	G	107.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=2.833;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr4	95531156	rs9992701	G	A	85.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=2.833;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:97,9,0
chr4	95531417	rs10017461	A	G	6708.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=0.796;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1935,192,0
chr4	95531562	rs10007050	T	C	3717.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=1.718;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1199,120,0
chr4	95531644	rs7690869	A	G	1828.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.69;SOR=6.229;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:631,48,0
chr4	95539267	rs966845	G	A	17366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=1.129;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,175:175:99:5317,521,0
chr4	95561459	rs7690296	A	G	2823.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=1.485;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2840,275,0
chr4	95561651	rs10716970	GT	G	2825.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DB;DP=68;ExcessHet=3.9794;FS=1.266;MQ=60.00;MQRankSum=0.00;QD=14.72;ReadPosRankSum=-6.400e-01;SOR=0.820;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,13:68:99:120,0,1047
chr4	95578588	rs13107595	G	A	15637.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=170;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=1.386;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,170:170:99:5070,506,0
chr4	95583827	rs10031423	C	T	1166.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=5.421;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr4	95585038	rs56921499	G	A	2081.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=3.258;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:470,39,0
chr4	95585225	rs1056772	A	G	941.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.799;SOR=0.823;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,23:37:99:592,0,250
chr4	95587259	rs11550270	A	C	1573.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-2.000e-02;SOR=0.723;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,27:67:99:606,0,894
chr4	96035796	rs10622489	G	GAC	1285.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=30;ExcessHet=6.9897;FS=6.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.518;SOR=1.581;VQSLOD=6.13;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,15:30:99:414,0,422
chr4	96070130	rs191183602	C	G	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.534e+00;DB;DP=32;ExcessHet=3.0103;FS=2.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-9.350e-01;SOR=0.126;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:324,0,733
chr4	96073956	rs1365691	A	T	946.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=2.42;SOR=0.756;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,11:32:99:239,0,585
chr4	96075965	rs1434536	C	T	543.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.390e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-3.570e-01;SOR=0.435;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:293,0,214
chr4	96076020	rs1836261	A	G	252.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=0.816;SOR=0.976;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:140,0,61
chr4	96091250	rs2241744	G	A	718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.306;SOR=0.446;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,14:21:99:488,0,201
chr4	96091524	rs2241743	G	A	2755.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-01;DB;DP=83;ExcessHet=3.9794;FS=3.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=0.131;SOR=0.481;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,51:83:99:1428,0,861
chr4	96123981	rs3733212	C	T	3876.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e-01;DB;DP=126;ExcessHet=6.9897;FS=6.155;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=0.922;SOR=0.471;VQSLOD=6.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,54:126:99:1310,0,1748
chr4	96127869	rs2276322	T	G	4920.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107e+00;DB;DP=131;ExcessHet=6.9897;FS=0.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.274;SOR=0.751;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,67:131:99:1614,0,1677
chr4	96128053	rs35063112	C	CT	696.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120e-01;DB;DP=34;ExcessHet=6.9897;FS=1.955;MQ=59.90;MQRankSum=0.00;QD=8.50;ReadPosRankSum=-5.010e-01;SOR=1.027;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,7:34:83:83,0,344
chr4	96137512	rs995062	T	C	1290.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e+00;DB;DP=26;ExcessHet=6.9897;FS=1.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=-5.390e-01;SOR=0.518;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:458,0,226
chr4	96166270	rs35120448	C	T	653.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.619;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-8.700e-01;SOR=0.602;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,27:60:99:662,0,860
chr4	96166370	rs76859481	C	T	79.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=2.19;SOR=0.495;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:88:88,0,151
chr4	96169733	rs13118653	G	T	2408.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.791;DB;DP=97;ExcessHet=3.9794;FS=1.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=0.291;SOR=0.584;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,41:97:99:938,0,1512
chr4	96256616	rs4699423	A	G	5647.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.579;DB;DP=152;ExcessHet=6.9897;FS=1.107;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=-2.490e-01;SOR=0.796;VQSLOD=6.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,74:152:99:1864,0,1856
chr4	96256673	rs1843018	G	A	16504.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.44;SOR=0.897;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,165:165:99:5158,495,0
chr4	96762629	rs1030835	A	G	965.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=0.134;SOR=1.067;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:280,0,160
chr4	96762698	rs1030834	C	T	338.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.33;SOR=4.615;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr4	98633911	rs17026871	A	G	344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DB;DP=53;ExcessHet=3.0103;FS=1.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.50;ReadPosRankSum=-1.030e+00;SOR=0.698;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,19:53:99:353,0,742
chr4	98761900	rs11735193	C	T	4238.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.228e+00;DB;DP=100;ExcessHet=1.5490;FS=2.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.58;ReadPosRankSum=-1.300e-01;SOR=0.494;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,99:100:99:2965,256,0
chr4	98864859	rs28417716	C	T	961.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.630e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=-2.385e+00;SOR=1.432;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:742,57,0
chr4	98893334	rs13147195	G	T	1340.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.580e-01;DB;DP=23;ExcessHet=1.5490;FS=4.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=0.724;SOR=2.061;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:861,69,0
chr4	98893721	rs9884501	A	C	206.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.11;SOR=3.611;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	98902278	rs35146453	A	G	2097.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.823e+00;DB;DP=50;ExcessHet=1.5490;FS=1.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=0.423;SOR=0.461;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1505,150,0
chr4	99026849	rs13144055	A	G	148.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=1.981;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:165,15,0
chr4	99026935	rs13144771	G	C	815.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.912e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-5.940e-01;SOR=0.396;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:413,36,0
chr4	99027137	rs2865979	T	C	3175.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=71;ExcessHet=1.5490;FS=1.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=-1.404e+00;SOR=0.877;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2164,213,0
chr4	99027184	rs2903150	T	C	1517.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.900e-01;DB;DP=33;ExcessHet=1.5490;FS=10.168;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.965;SOR=1.781;VQSLOD=18.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1062,99,0
chr4	99027218	rs2903151	T	C	957.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.448;DB;DP=19;ExcessHet=1.5490;FS=1.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=1.23;SOR=1.127;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:716,57,0
chr4	99030211	rs10019087	C	T	489.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.715;DB;DP=9;ExcessHet=1.5490;FS=5.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.84;ReadPosRankSum=2.00;SOR=0.096;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:301,27,0
chr4	99030587	rs10021709	G	A	105.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=2.833;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:40,3,0
chr4	99049593	rs17558193	A	G	2333.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=46;ExcessHet=1.5490;FS=1.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=1.36;SOR=1.026;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,45:46:99:1434,99,0
chr4	99049974	rs13131962	A	G	152.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.45;SOR=3.258;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	99055406	rs13328042	A	G	654.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.000e-03;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=-3.250e-01;SOR=0.756;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:568,45,0
chr4	99055480	rs13328005	T	C	1767.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.430e-01;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=0.261;SOR=0.722;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1397,141,0
chr4	99055730	rs35399947	C	CTAA	758.23	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.59;ReadPosRankSum=-3.840e-01;SOR=2.124;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:540,36,0
chr4	99063879	rs35418265	CAT	C	157.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.56;SOR=3.258;VQSLOD=5.40;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr4	99064379	rs4699605	A	G	1011.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=22;ExcessHet=1.5490;FS=1.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=-7.550e-01;SOR=1.262;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:733,66,0
chr4	99218108	rs34325900	G	GA	2794.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.090e-01;DB;DP=62;ExcessHet=6.9897;FS=6.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=-6.920e-01;SOR=0.715;VQSLOD=6.26;culprit=FS	GT:AD:DP:GQ:PL	0/1:41,21:62:99:661,0,1471
chr4	99337881	rs10516430	C	T	471.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.067;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-4.150e-01;SOR=1.179;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:480,0,450
chr4	99339708	rs17027570	C	T	339.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.871e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=-1.155e+00;SOR=0.892;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:348,0,124
chr4	99399748	rs4303985	G	T	1356.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.760e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=2.75;SOR=0.806;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:176,0,147
chr4	99408106	rs6838913	T	C	5631.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=2.134;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1480,138,0
chr4	99795930	rs10856941	G	T	499.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.57;SOR=5.421;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr4	99796005	rs28577966	A	G	76.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.56;SOR=1.179;VQSLOD=18.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:88,9,0
chr4	99802395	rs11729285	C	T	733.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=1.83;SOR=0.836;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,3:19:64:64,0,394
chr4	99808254	rs62323192	G	A	547.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.140e+00;DB;DP=33;ExcessHet=3.0103;FS=4.384;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=-1.198e+00;SOR=0.156;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:556,0,446
chr4	99850126	rs11723037	A	G	4183.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=77;ExcessHet=3.9794;FS=0.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=0.710;SOR=0.738;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,35:77:99:893,0,1101
chr4	99916759	rs200358115	T	TG	484.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.63;SOR=5.421;VQSLOD=4.85;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr4	99918661	rs10035037	A	C	3847.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=49;ExcessHet=3.0103;FS=1.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=1.34;SOR=0.759;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1359,146,0
chr4	99926965	rs2123782	T	C	4978.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.300e-01;DB;DP=65;ExcessHet=3.0103;FS=3.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.93;ReadPosRankSum=-1.200e-01;SOR=1.160;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1968,193,0
chr4	99952607	rs1037476	C	T	10714.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.326e+00;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=1.66;SOR=0.820;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4107,403,0
chr4	99952710	rs1037475	A	G	12776.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.99;DB;DP=216;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.97;ReadPosRankSum=0.674;SOR=0.416;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,215:216:99:6190,636,0
chr4	99960375	.	TA	T	36.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.06;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:45:45,0,52
chr4	99960736	rs372906038	CT	C	407.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.407;DB;DP=58;ExcessHet=6.9897;FS=5.410;MQ=60.00;MQRankSum=0.00;QD=2.32;ReadPosRankSum=-5.810e-01;SOR=1.533;VQSLOD=4.21;culprit=QD	GT:AD:DP:GQ:PL	0/1:43,14:58:99:168,0,933
chr4	99966568	rs11721765	G	C	1494.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.57;SOR=4.294;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:480,33,0
chr4	99996373	rs1154416	G	T	1063.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.18;SOR=4.977;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:99996373_G_T:342,27,0:99996373
chr4	99996376	rs372067828	GT	G	1278.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.730e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.65;ReadPosRankSum=-2.390e-01;SOR=3.611;VQSLOD=3.91;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:24:1|1:99996373_G_T:314,24,0:99996373
chr4	100001247	rs1154412	T	C	1633.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.76;DB;DP=11;ExcessHet=3.0103;FS=1.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.18;ReadPosRankSum=1.57;SOR=1.445;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:442,33,0
chr4	100001373	.	G	GAAA	67.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=13.53;ReadPosRankSum=1.65;SOR=0.061;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,137
chr4	100006645	rs1154410	A	G	7827.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.33;SOR=0.946;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2144,195,0
chr4	100009590	rs1154403	C	T	1350.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.68;QD=28.09;SOR=3.258;VQSLOD=3.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:33:1|1:100009590_C_T:471,33,0:100009590
chr4	100009596	rs1154402	C	G	1705.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.16;SOR=3.967;VQSLOD=19.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:100009590_C_T:528,36,0:100009590
chr4	100009738	rs1154401	G	C	30432.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.012;DB;DP=461;ExcessHet=3.0103;FS=0.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-8.240e-01;SOR=0.578;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,461:461:99:13219,1381,0
chr4	100009952	rs11434442	T	TGG	1397.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=59.56;POSITIVE_TRAIN_SITE;QD=31.04;SOR=0.929;VQSLOD=5.19;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,17:17:53:630,53,0
chr4	100010010	rs1154400	C	T	922.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=6.439;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:214,18,0
chr4	100021124	rs2851279	T	C	2259.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=0.927;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:565,60,0
chr4	100021253	rs2851278	G	C	1969.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.38;SOR=1.903;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:50:476,50,0
chr4	100045500	rs1042365	T	G	3696.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=2.644;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:892,95,0
chr4	100045574	rs1042364	T	C	6505.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.28;SOR=1.413;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1805,179,0
chr4	100045616	rs1126673	C	T	6656.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=2.33;SOR=0.659;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2446,240,0
chr4	100045647	rs2602894	A	G	10031.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=0.913;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2889,272,0
chr4	100045840	rs2602895	C	T	3437.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.74;SOR=3.237;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:70:708,70,0
chr4	100045974	rs2851248	T	C	398.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.18;SOR=4.977;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr4	100047929	rs10009145	G	A	3993.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=2.303;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1502,138,0
chr4	100048327	rs9307234	G	A	1884.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.200e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.55;ReadPosRankSum=0.099;SOR=0.728;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:787,72,0
chr4	100048414	rs1126671	T	C	3385.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.340e-01;DB;DP=41;ExcessHet=3.0103;FS=0.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=-3.560e-01;SOR=0.613;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1285,123,0
chr4	100048506	rs6836440	G	A	2911.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.630e-01;DB;DP=34;ExcessHet=3.0103;FS=0.813;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=0.653;SOR=0.538;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1000,101,0
chr4	100052733	rs1126670	C	A	4110.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.030e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=-1.720e-01;SOR=0.674;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1225,126,0
chr4	100062819	rs2032349	A	G	4891.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.200e-02;DB;DP=56;ExcessHet=3.0103;FS=4.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=-2.400e-01;SOR=0.388;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1761,168,0
chr4	100064166	rs5860566	G	GA	657.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=1.27;SOR=0.836;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:238,27,0
chr4	100064305	rs4699715	C	G	4746.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=59;ExcessHet=3.0103;FS=2.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=1.83;SOR=0.885;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1834,176,0
chr4	100065509	rs1800759	T	G	3469.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.36;SOR=2.086;VQSLOD=19.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1059,87,0
chr4	100065593	rs1800761	T	C	1784.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.930;DB;DP=8;ExcessHet=3.0103;FS=3.321;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.68;ReadPosRankSum=-4.710e-01;SOR=2.262;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:316,24,0
chr4	100065626	rs1800760	A	T	427.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.53;SOR=4.977;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr4	100137292	.	ATTTT	ATTT,A	623.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-6.200e-02;DP=19;ExcessHet=3.9794;FS=0.000;MQ=59.80;MQRankSum=-3.480e-01;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=-1.343e+00;SOR=0.927;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,6,6:19:57:344,209,217,57,0,304
chr4	100137534	rs4699733	G	C	669.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=-1.337e+00;SOR=1.179;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:310,24,0
chr4	100140306	rs4699735	A	T	5462.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=0.941;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1927,189,0
chr4	100205819	rs28364312	C	A	5098.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.370e-01;DB;DP=80;ExcessHet=1.5490;FS=4.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.90;ReadPosRankSum=-1.192e+00;SOR=1.070;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,80:80:99:1|1:100205819_C_A:3566,241,0:100205819
chr4	100205829	rs28364311	T	G	4966.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=80;ExcessHet=1.5490;FS=1.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=-9.600e-01;SOR=0.899;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,80:80:99:1|1:100205819_C_A:3570,241,0:100205819
chr4	100212173	rs13134764	A	T	2331.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.554;DB;DP=41;ExcessHet=1.5490;FS=6.070;MQ=60.00;MQRankSum=0.00;QD=25.90;ReadPosRankSum=0.990;SOR=1.376;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,41:41:99:1|1:100212173_A_T:1768,123,0:100212173
chr4	100212197	rs4147531	G	A	2640.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.415;DB;DP=37;ExcessHet=1.5490;FS=5.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=-3.620e-01;SOR=1.421;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:100212173_A_T:1654,111,0:100212173
chr4	100231602	rs28914783	C	T	998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DB;DP=23;ExcessHet=3.9794;FS=2.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=0.284;SOR=1.438;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:478,0,234
chr4	100239112	rs4147536	A	C	205.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.598;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=-1.260e-01;SOR=0.859;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:108,0,67
chr4	100239319	rs1229984	T	C	6425.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.377e+00;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.34;ReadPosRankSum=0.499;SOR=0.246;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,65:66:99:1851,157,0
chr4	100257907	rs2298753	T	C	2785.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.44;DB;DP=51;ExcessHet=1.5490;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.27;ReadPosRankSum=0.425;SOR=0.641;VQSLOD=6.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1732,153,0
chr4	100258007	rs1612735	T	C	9539.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=0.775;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4065,407,0
chr4	100258054	rs1693453	C	A	11364.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=1.64;SOR=0.304;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3501,361,0
chr4	100258224	rs1391088	A	C	1541.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.76;SOR=7.523;VQSLOD=23.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:234,21,0
chr4	100260667	rs374716842	ACGCC	A	880.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=57.67;QD=30.37;SOR=3.716;VQSLOD=4.88;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:100260667_ACGCC_A:450,30,0:100260667
chr4	100260677	rs2298754	C	G	991.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=0.4576;FS=0.000;MQ=57.98;QD=29.36;SOR=4.003;VQSLOD=4.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:100260667_ACGCC_A:490,33,0:100260667
chr4	100260789	rs698	T	C	5603.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.449e+00;DB;DP=82;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.96;ReadPosRankSum=-2.960e-01;SOR=0.615;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,81:82:99:2323,203,0
chr4	100261038	rs2298755	C	G	711.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.99;SOR=3.716;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:215,21,0
chr4	100261040	rs3216150	C	CA	416.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.78;SOR=5.549;VQSLOD=6.78;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:116,12,0
chr4	100261577	rs55753621	AT	A	1174.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.69;SOR=4.112;VQSLOD=5.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:54:647,54,0
chr4	100261952	rs1693471	G	A	12924.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.771e+00;DB;DP=190;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=-7.230e-01;SOR=0.415;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,190:190:99:5867,567,0
chr4	100262041	rs1789903	C	G	7265.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.803e+00;DB;DP=98;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.18;ReadPosRankSum=1.46;SOR=0.884;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3279,294,0
chr4	100263778	rs1789911	T	C	961.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.64;SOR=6.439;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:499,36,0
chr4	100263834	rs1693481	C	T	2955.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=6.385;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1265,96,0
chr4	100263942	rs1789912	C	T	13963.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.750e-01;DB;DP=164;ExcessHet=0.4576;FS=0.000;MQ=59.04;MQRankSum=-4.500e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=0.727;SOR=1.144;VQSLOD=0.396;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,164:164:99:5481,491,0
chr4	100263965	rs1693482	C	T	17966.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=220;ExcessHet=0.4576;FS=0.000;MQ=56.64;MQRankSum=-7.260e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.03;ReadPosRankSum=-1.860e-01;SOR=0.856;VQSLOD=-5.652e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,220:220:99:7601,660,0
chr4	100265826	rs34551784	T	TAACTC	1420.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=6.869;VQSLOD=7.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr4	100266112	rs1693425	C	T	14399.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=213;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=-2.880e-01;SOR=1.087;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,211:213:99:6918,589,0
chr4	100266330	rs1693426	A	G	6576.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=0.4576;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.90;SOR=0.995;VQSLOD=4.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2940,272,0
chr4	100266583	rs1662053	A	C	998.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.02;SOR=3.611;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:372,30,0
chr4	100266635	rs1662052	A	G	673.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.42;SOR=5.670;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:344,24,0
chr4	100266696	rs1789916	G	A	259.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=4.174;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr4	100268049	rs1693431	T	G	251.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.33;SOR=3.912;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	100268132	rs33988198	A	C	662.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=0.433;SOR=0.818;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:422,33,0
chr4	100268190	rs283413	A	C	2770.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=1.981;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:708,63,0
chr4	100269045	rs17526590	G	A	4081.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.48;DB;DP=102;ExcessHet=1.5490;FS=1.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=0.661;SOR=0.810;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2893,305,0
chr4	100334497	rs76580560	T	G	65.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:74,0,71
chr4	100336375	rs2851297	C	T	107.15	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=1.38;SOR=1.022;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr4	100336448	rs35672109	GTT	G,GT	234.81	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.09;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,2:5:42:156,50,42,84,0,70
chr4	100340522	rs1154458	C	G	256.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.11;ReadPosRankSum=0.967;SOR=2.833;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:75,0,35
chr4	100341643	rs1154460	G	A	3393.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=46;ExcessHet=3.9794;FS=6.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=-5.250e-01;SOR=1.285;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,19:46:99:463,0,689
chr4	100356179	rs1154469	C	T	1299.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=42;ExcessHet=3.9794;FS=2.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=1.84;SOR=1.028;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:444,0,672
chr4	100356337	rs1154470	G	A	3311.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=85;ExcessHet=3.9794;FS=1.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.125;SOR=0.831;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,42:85:99:1115,0,1147
chr4	100434559	rs61703471	C	T	210.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=1.38;SOR=2.584;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:69:149,0,69
chr4	100443504	rs34420658	A	AT	192.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.442;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.69;ReadPosRankSum=-3.110e-01;SOR=0.495;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:43:43,0,91
chr4	100443782	rs13119384	T	C	4044.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=92;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-4.380e-01;SOR=0.723;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,43:92:99:1193,0,1357
chr4	100445589	rs35080520	T	TC	450.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DB;DP=9;ExcessHet=6.9897;FS=5.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.120;SOR=2.472;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:9:99:175,0,131
chr4	100445763	rs61598233	GCTAT	G	2277.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=1.71;SOR=0.693;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,26:58:99:965,0,1799
chr4	100451127	rs45440196	G	A	551.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=25;ExcessHet=3.9794;FS=2.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=-1.466e+00;SOR=0.279;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:380,0,401
chr4	100451197	rs2089079	C	T	458.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=6.9897;FS=5.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.842;SOR=0.099;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,156
chr4	100457117	rs111869659	A	ACAGT	3552.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530e-01;DB;DP=56;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.52;ReadPosRankSum=0.369;SOR=0.704;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,29:56:99:1178,0,1510
chr4	100457344	rs10019266	C	T	2241.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.597e+00;DB;DP=42;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-2.670e-01;SOR=0.696;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:713,0,575
chr4	100458561	rs10022775	G	T	324.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=1.96;SOR=0.446;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:106,0,113
chr4	100459028	rs10516443	C	T	537.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.864;SOR=0.906;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:171,0,185
chr4	100470132	rs1054730	T	C	307.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=0.328;SOR=0.289;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:134,0,215
chr4	100472229	rs11274750	GATTTATAGTTCAGAGA	G	249.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.00;SOR=0.321;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:160,0,437
chr4	100477462	rs11935423	C	T	550.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-3.720e-01;SOR=1.179;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:284,0,161
chr4	100478624	rs3817083	C	T	1562.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158e+00;DB;DP=55;ExcessHet=3.9794;FS=3.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-8.600e-02;SOR=0.368;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,22:55:99:623,0,1005
chr4	100478740	rs10007794	C	A	571.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=0.800;SOR=1.220;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:67:221,0,67
chr4	100485244	rs11944749	G	C	1434.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=57;ExcessHet=3.9794;FS=1.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-3.640e-01;SOR=0.877;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,24:57:99:769,0,1011
chr4	100485255	rs11944752	G	A	1290.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.610e-01;DB;DP=60;ExcessHet=3.9794;FS=0.732;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=-2.570e-01;SOR=0.563;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,24:60:99:671,0,1125
chr4	100491680	rs11946658	C	A	211.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=1.07;SOR=0.859;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:105,0,138
chr4	100491772	rs11933337	T	C	640.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=30;ExcessHet=3.9794;FS=1.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.187;SOR=1.022;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:431,0,421
chr4	100495817	rs1800804	T	C	506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;DB;DP=15;ExcessHet=3.9794;FS=1.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=-3.820e-01;SOR=1.329;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:224,0,216
chr4	100496261	rs3833621	CTT	C	331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.40;ReadPosRankSum=0.464;SOR=0.693;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:144,0,210
chr4	100502778	rs112469528	CA	C	390.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.00;ReadPosRankSum=-3.010e-01;SOR=1.220;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:54:206,0,54
chr4	100502822	rs28595160	G	T	885.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.749;SOR=0.446;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:406,0,174
chr4	100503136	rs141736123	C	G	751.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.91;ReadPosRankSum=1.18;SOR=0.723;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:760,0,840
chr4	100504664	rs3816873	T	C	793.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DB;DP=32;ExcessHet=3.9794;FS=1.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=0.949;SOR=0.771;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:303,0,406
chr4	100534041	rs2718684	G	A	2958.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DB;DP=114;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.607;SOR=0.677;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,57:114:99:1317,0,1359
chr4	100543745	rs2255119	A	G	2111.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=57;ExcessHet=3.9794;FS=6.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=1.44;SOR=0.327;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,26:57:99:731,0,813
chr4	100738035	rs715239	G	T	1949.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.406e+00;DB;DP=45;ExcessHet=1.5490;FS=0.992;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=1.52;SOR=0.552;VQSLOD=6.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1420,133,0
chr4	100738397	rs2282588	T	A	2607.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.85;DB;DP=36;ExcessHet=3.9794;FS=1.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=-1.380e-01;SOR=0.998;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1346,108,0
chr4	100757048	rs3733463	G	A	1662.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.627;DB;DP=34;ExcessHet=1.5490;FS=4.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=-1.910e-01;SOR=0.231;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1160,101,0
chr4	100784875	rs71913814	GT	G	1086.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=26;ExcessHet=6.9897;FS=0.544;MQ=59.98;MQRankSum=0.00;QD=7.20;ReadPosRankSum=0.432;SOR=0.766;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,4:26:4:4,0,385
chr4	100784980	rs3737484	C	T	3018.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=56;ExcessHet=1.5490;FS=5.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=-7.400e-02;SOR=1.256;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1722,168,0
chr4	100805207	rs6532835	C	A	1300.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=30;ExcessHet=3.9794;FS=2.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=1.01;SOR=0.974;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,28:30:40:845,40,0
chr4	100827622	rs7684872	A	G	294.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=2;ExcessHet=3.9794;FS=9.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=1.69;SOR=0.044;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	100829746	rs7676564	T	C	873.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.81;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=1.08;SOR=0.922;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:329,27,0
chr4	100870182	rs61203457	T	C	1942.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.000e-01;DB;DP=42;ExcessHet=1.5490;FS=2.918;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.898;SOR=0.446;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1301,126,0
chr4	100870375	rs2276939	T	G	423.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=9;ExcessHet=1.5490;FS=2.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=-4.930e-01;SOR=1.880;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:380,27,0
chr4	100871152	rs73832925	C	T	2340.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.338e+00;DB;DP=58;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.44;ReadPosRankSum=0.224;SOR=0.800;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1911,172,0
chr4	101109161	rs3749604	G	C	4675.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840e-01;DB;DP=159;ExcessHet=3.9794;FS=0.381;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-2.180e-01;SOR=0.730;VQSLOD=6.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,73:159:99:1739,0,2234
chr4	101337150	rs4699401	C	T	1160.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.22;SOR=0.976;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1177,135,0
chr4	101338217	rs3733437	T	C	1973.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.911e+00;DB;DP=39;ExcessHet=1.5490;FS=4.787;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.56;ReadPosRankSum=-2.800e-01;SOR=0.328;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1231,117,0
chr4	101368661	rs1157180	A	G	1462.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.897;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=0.309;SOR=0.693;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,50:52:99:1479,106,0
chr4	101946977	.	CAA	C	344.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DP=13;ExcessHet=6.9897;FS=5.951;MQ=59.28;MQRankSum=0.00;QD=6.90;ReadPosRankSum=0.770;SOR=1.673;VQSLOD=4.48;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,5:13:89:89,0,134
chr4	101953182	rs1880942	T	C	103.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=2.833;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr4	101953322	rs2851060	C	T	3137.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.78;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.575;SOR=0.758;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1595,138,0
chr4	101961825	rs139637703	AT	A	78.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.810e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.59;ReadPosRankSum=-1.250e+00;SOR=0.307;VQSLOD=5.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,4:16:87:87,0,214
chr4	102092507	rs35058537	C	CA	148.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.44;ReadPosRankSum=1.21;SOR=0.465;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:44:44,0,142
chr4	102116854	rs10005338	A	G	217.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=1.65;SOR=1.609;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:34:100,0,34
chr4	102116994	rs2659542	G	A	565.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-1.860e-01;SOR=0.653;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:337,0,340
chr4	102117323	rs2850991	A	G	411.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.976;SOR=0.622;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:242,0,270
chr4	102161828	rs3789748	T	G	1077.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=19;ExcessHet=6.9897;FS=1.635;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=0.620;SOR=1.082;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:158,0,406
chr4	102162086	rs11944013	T	C	1458.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.418e+00;DB;DP=24;ExcessHet=6.9897;FS=3.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=-6.860e-01;SOR=1.380;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:435,0,293
chr4	102171591	rs2583404	T	G	4057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=3.200;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1098,93,0
chr4	102171606	rs2850958	A	G	3464.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=4.129;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:999,78,0
chr4	102251501	rs28664200	T	C	930.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940e-01;DB;DP=37;ExcessHet=3.9794;FS=6.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=0.292;SOR=0.277;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:364,0,584
chr4	102251782	rs2583394	C	T	750.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.962e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.05;ReadPosRankSum=0.293;SOR=0.610;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:299,0,223
chr4	102267821	rs2850327	A	C	19302.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=205;ExcessHet=3.9794;FS=0.739;MQ=60.00;MQRankSum=0.00;QD=30.93;ReadPosRankSum=0.285;SOR=0.630;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:100,105:205:99:0|1:102267821_A_C:4105,0,5809:102267821
chr4	102267822	rs2583390	A	G	19302.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.414e+00;DB;DP=206;ExcessHet=3.9794;FS=0.740;MQ=60.00;MQRankSum=0.00;QD=30.54;ReadPosRankSum=0.295;SOR=0.592;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:101,105:206:99:0|1:102267821_A_C:4105,0,5809:102267821
chr4	102268034	rs3974660	A	ACGCCGC	3359.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=126;ExcessHet=3.9794;FS=9.403;MQ=60.00;MQRankSum=0.00;QD=14.73;ReadPosRankSum=-1.572e+00;SOR=1.418;VQSLOD=2.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:78,42:126:99:1466,0,5135
chr4	102642453	rs10856962	T	C	5537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=33.56;SOR=1.868;VQSLOD=4.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1735,159,0
chr4	102750922	rs17266594	T	C	167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.050;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=-1.000e-01;SOR=1.911;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:176,0,146
chr4	102751076	rs10516487	G	A	1278.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=97;ExcessHet=3.0103;FS=3.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.949;SOR=1.167;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,48:97:99:1287,0,1132
chr4	102751276	rs10516486	C	T	4359.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.710e-01;DB;DP=84;ExcessHet=1.5490;FS=3.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=0.814;SOR=0.441;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,46:84:99:1200,0,995
chr4	102751401	rs58497383	GTTT	G,GTT	2493.13	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.410e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.24;ReadPosRankSum=1.04;SOR=0.700;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,10,11:25:99:651,268,349,359,0,323
chr4	102791905	rs10516483	C	G	1661.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-01;DB;DP=12;ExcessHet=3.9794;FS=1.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=-5.500e-01;SOR=1.286;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:215,0,194
chr4	102839287	rs3733197	G	A	2333.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.039e+00;DB;DP=56;ExcessHet=1.5490;FS=3.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=0.556;SOR=0.365;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1648,168,0
chr4	102839362	rs3733198	A	T	1404.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.53;SOR=4.362;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:560,51,0
chr4	102942765	rs139919861	T	TTA	254.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=-3.610e-01;SOR=0.368;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:152,12,0
chr4	102965043	rs3113676	T	C	4636.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.10;SOR=0.889;VQSLOD=18.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1448,159,0
chr4	103174196	rs151372	C	T	107.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.02;SOR=2.833;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr4	103174309	rs151371	C	T	1703.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.234e+00;DB;DP=19;ExcessHet=3.9794;FS=2.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=0.436;SOR=0.307;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:696,57,0
chr4	103174316	rs11382393	C	CG	2170.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.737;DB;DP=21;ExcessHet=3.9794;FS=5.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.93;ReadPosRankSum=1.24;SOR=0.151;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:66:1|1:103174316_C_CG:990,66,0:103174316
chr4	103174321	rs35608353	C	T	2240.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.461e+00;DB;DP=23;ExcessHet=3.9794;FS=5.041;MQ=60.00;MQRankSum=0.00;QD=29.49;ReadPosRankSum=1.51;SOR=0.123;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:103174316_C_CG:1027,69,0:103174316
chr4	103174491	rs151370	A	G	9215.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=161;ExcessHet=3.9794;FS=0.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=1.22;SOR=0.767;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:4703,481,0
chr4	103174819	rs192068	G	A	449.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.14;ReadPosRankSum=0.319;SOR=3.611;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr4	103180875	rs189215	C	T	105.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.86;SOR=2.833;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr4	103184089	rs151393	A	G	873.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.438e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=-8.500e-02;SOR=0.976;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:523,42,0
chr4	103189416	rs13114343	G	A	305.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.51;ReadPosRankSum=0.524;SOR=2.303;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr4	103228976	rs41275739	G	A	151.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=3.611;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:168,15,0
chr4	103458825	rs230526	A	G	108.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.06;SOR=3.258;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:120,12,0
chr4	103458877	rs230525	G	A	1531.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.75;SOR=5.943;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:328,27,0
chr4	103458888	rs3830689	TCA	T	1812.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.956;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.12;ReadPosRankSum=0.072;SOR=1.863;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:585,39,0
chr4	103488491	rs230496	G	A	812.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.02;ReadPosRankSum=1.30;SOR=1.863;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr4	103505784	rs10711129	CA	C	355.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.916;DB;DP=17;ExcessHet=6.9897;FS=4.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.39;ReadPosRankSum=0.523;SOR=1.585;VQSLOD=6.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,2:17:2:2,0,324
chr4	103514658	rs1609993	T	C	5356.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=0.865;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2142,216,0
chr4	103592285	rs227362	C	T	396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.670e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-1.090e-01;SOR=0.776;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:405,0,491
chr4	103594918	rs227276	T	C	174.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.812;SOR=0.551;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:133,12,0
chr4	103594938	rs227277	G	A	352.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.135e+00;DB;DP=6;ExcessHet=1.5490;FS=2.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=-1.311e+00;SOR=0.317;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:172,18,0
chr4	103610872	rs227365	A	G	2990.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=0.494;SOR=0.658;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1644,173,0
chr4	103611845	rs227368	C	T	4260.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=103;ExcessHet=1.5490;FS=0.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=7.000e-03;SOR=0.761;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:2887,308,0
chr4	103732704	rs201561589	T	TG	453.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.14;SOR=2.303;VQSLOD=3.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr4	103789987	.	C	T	893.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230e-01;DP=116;ExcessHet=3.0103;FS=1.619;MQ=60.00;MQRankSum=0.00;QD=7.70;ReadPosRankSum=0.055;SOR=0.943;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,40:116:99:902,0,2009
chr4	103808427	.	C	A	94.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.057e+00;DP=9;ExcessHet=3.0103;FS=3.522;MQ=48.63;MQRankSum=-2.412e+00;QD=10.50;ReadPosRankSum=-9.520e-01;SOR=0.069;VQSLOD=-2.344e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:102,0,144
chr4	103808458	rs201682974	T	C	147.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662e+00;DB;DP=15;ExcessHet=3.9794;FS=5.027;MQ=45.47;MQRankSum=-1.735e+00;QD=3.20;ReadPosRankSum=1.34;SOR=0.223;VQSLOD=-2.619e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:103,0,252
chr4	103808515	rs199992363	T	C	271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910e-01;DB;DP=17;ExcessHet=3.9794;FS=3.058;MQ=42.49;MQRankSum=-1.060e-01;QD=5.02;ReadPosRankSum=0.369;SOR=0.980;VQSLOD=-4.544e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,5:17:99:0|1:103808515_T_C:168,0,565:103808515
chr4	103808519	rs201294540	C	T	271.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.150e-01;DB;DP=17;ExcessHet=3.9794;FS=3.058;MQ=42.49;MQRankSum=-1.060e-01;QD=5.02;ReadPosRankSum=0.158;SOR=0.980;VQSLOD=-4.567e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,5:17:99:0|1:103808515_T_C:168,0,565:103808515
chr4	103822179	rs3974496	C	T	51.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=55.88;MQRankSum=-1.465e+00;NEGATIVE_TRAIN_SITE;QD=4.27;ReadPosRankSum=1.47;SOR=0.054;VQSLOD=-3.232e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,1:7:8:8,0,274
chr4	103822193	rs3974497	C	T	168.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=55.00;MQRankSum=-2.803e+00;NEGATIVE_TRAIN_SITE;QD=4.33;ReadPosRankSum=-8.120e-01;SOR=0.076;VQSLOD=-3.408e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:45:45,0,266
chr4	103822404	rs58374767	G	A	2420.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.681e+00;DB;DP=149;ExcessHet=6.9897;FS=1.205;MQ=50.51;MQRankSum=-4.550e+00;NEGATIVE_TRAIN_SITE;QD=5.05;ReadPosRankSum=1.05;SOR=0.804;VQSLOD=-4.376e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,53:149:99:925,0,2378
chr4	103822493	rs4444831	C	T	1595.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.728e+00;DB;DP=39;ExcessHet=6.9897;FS=7.420;MQ=48.80;MQRankSum=-4.299e+00;QD=11.24;ReadPosRankSum=-5.500e-01;SOR=1.886;VQSLOD=-3.507e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,9:39:99:0|1:103822482_AAC_A:323,0,1312:103822482
chr4	103822540	rs4416479	G	A	415.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.456e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=51.27;MQRankSum=-2.965e+00;NEGATIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=0.126;SOR=0.263;VQSLOD=-3.250e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:107,0,255
chr4	103822595	rs4527477	A	T	208.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.350e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=48.09;MQRankSum=-1.834e+00;QD=13.06;ReadPosRankSum=0.598;SOR=0.495;VQSLOD=-3.307e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:64,0,73
chr4	103822596	.	G	GA	118.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=4;ExcessHet=6.9897;FS=0.000;MQ=47.19;MQRankSum=-1.383e+00;QD=8.50;ReadPosRankSum=0.00;SOR=0.473;VQSLOD=0.371;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:45:45,0,45
chr4	103826508	rs138368808	G	A	69.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.41;ReadPosRankSum=1.38;SOR=0.105;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:103826508_G_A:78,0,78:103826508
chr4	103826509	rs140898856	CCA	C	69.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.41;ReadPosRankSum=1.38;SOR=0.105;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:103826508_G_A:78,0,78:103826508
chr4	103826666	.	C	T	354.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.133;DP=39;ExcessHet=6.9897;FS=8.034;MQ=49.92;MQRankSum=-3.459e+00;NEGATIVE_TRAIN_SITE;QD=2.65;ReadPosRankSum=-1.781e+00;SOR=1.846;VQSLOD=-4.028e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,5:39:51:51,0,1016
chr4	103826685	rs77618489	T	A	791.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=50;ExcessHet=6.9897;FS=10.201;MQ=49.52;MQRankSum=-4.758e+00;NEGATIVE_TRAIN_SITE;QD=4.80;ReadPosRankSum=-2.135e+00;SOR=1.693;VQSLOD=-4.614e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,9:50:99:130,0,1196
chr4	103826757	.	T	C	756.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.391e+00;DP=73;ExcessHet=6.9897;FS=0.000;MQ=48.52;MQRankSum=-5.962e+00;QD=3.41;ReadPosRankSum=1.05;SOR=0.659;VQSLOD=-5.109e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,14:73:99:113,0,1491
chr4	103826788	rs201197585	T	G	965.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.959e+00;DB;DP=65;ExcessHet=6.9897;FS=2.024;MQ=49.48;MQRankSum=-6.054e+00;QD=5.06;ReadPosRankSum=0.781;SOR=0.527;VQSLOD=-4.827e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,14:65:99:152,0,1261
chr4	103826813	.	A	G	909.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DP=49;ExcessHet=6.9897;FS=1.587;MQ=50.30;MQRankSum=-5.886e+00;QD=5.99;ReadPosRankSum=-7.440e-01;SOR=0.852;VQSLOD=-4.607e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,8:49:99:115,0,1110
chr4	103911069	rs2715591	C	A	6199.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=0.764;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1856,183,0
chr4	103941410	rs10676315	G	GT	663.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.298e+00;DB;DP=14;ExcessHet=3.9794;FS=2.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=1.10;SOR=0.425;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,2:14:8:8,0,253
chr4	104004064	rs79460377	T	C	1422.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=114;ExcessHet=3.0103;FS=1.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.689;SOR=0.892;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,55:114:99:1431,0,1435
chr4	104017688	.	AT	A	260.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.720e-01;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.54;MQRankSum=0.00;QD=8.99;ReadPosRankSum=0.475;SOR=1.528;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:39:64,0,39
chr4	104510766	rs2765	G	A	3266.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=53;ExcessHet=3.9794;FS=2.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=-5.780e-01;SOR=1.143;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,32:53:99:974,0,564
chr4	105393320	rs4282179	T	C	821.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.995;DB;DP=13;ExcessHet=1.5490;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.44;ReadPosRankSum=1.64;SOR=0.275;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:105393320_T_C:192,0,292:105393320
chr4	105393329	rs10693247	C	CT	484.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=14;ExcessHet=6.9897;FS=4.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=1.13;SOR=0.177;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,7:14:99:0|1:105393320_T_C:213,0,289:105393320
chr4	105393361	rs4413407	A	G	1414.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.580e-01;DB;DP=21;ExcessHet=3.9794;FS=1.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=0.036;SOR=0.970;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:186,0,347
chr4	106154990	rs10536063	TATAGATAG	T	2577.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.101;DB;DP=22;ExcessHet=3.0103;FS=4.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.44;ReadPosRankSum=-8.080e-01;SOR=1.364;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,22:22:67:982,67,0
chr4	106156163	rs61744960	G	A	931.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.056e+00;DB;DP=61;ExcessHet=3.0103;FS=3.660;MQ=59.89;MQRankSum=-8.880e-01;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.920;SOR=1.338;VQSLOD=0.839;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,33:61:99:940,0,819
chr4	106164284	rs55838312	T	G	707.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.9794;FS=5.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=-1.006e+00;SOR=3.258;VQSLOD=17.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:137,0,105
chr4	106196092	rs2647243	C	T	1084.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.36;SOR=4.407;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr4	106196951	rs2454206	A	G	3661.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.814;DB;DP=58;ExcessHet=1.5490;FS=5.398;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=0.895;SOR=1.276;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,29:58:99:848,0,739
chr4	106290829	rs11267164	A	ACTTGGGGAAAAAGAGT	550.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=-9.560e-01;SOR=0.831;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,17:68:99:559,0,8403
chr4	106292109	rs72665979	G	A	31.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.256e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=1.25;ReadPosRankSum=-1.372e+00;SOR=0.404;VQSLOD=21.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,4:25:40:40,0,634
chr4	106292121	rs2726526	G	C	1861.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.83;ReadPosRankSum=0.518;SOR=0.743;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:732,63,0
chr4	106317370	rs145622118	T	TATAAA	1549.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=26;ExcessHet=1.5490;FS=10.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=-1.133e+00;SOR=2.683;VQSLOD=3.83;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,9:26:99:404,0,681
chr4	106317429	rs13787	C	G	2312.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=51;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.36;ReadPosRankSum=0.450;SOR=0.691;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,21:51:99:641,0,800
chr4	106317498	rs34331553	CCAAA	C	4133.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DB;DP=75;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=-1.033e+00;SOR=0.713;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,35:75:99:1309,0,1503
chr4	106320399	rs1490593	G	C	1117.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.555;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=1.83;SOR=0.809;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:279,0,626
chr4	106320446	rs1490594	G	A	967.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=-5.270e-01;SOR=0.509;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:264,0,429
chr4	106320467	rs17035550	T	C	508.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=20;ExcessHet=3.9794;FS=2.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=1.03;SOR=0.336;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:382,0,247
chr4	106320532	rs2713870	T	C	336.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.63;ReadPosRankSum=1.65;SOR=2.494;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:119,0,63
chr4	106345125	rs2726514	A	G	526.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=0.697;SOR=0.399;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:179,15,0
chr4	106359209	rs2713862	T	A	1716.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=38;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=0.985;SOR=0.633;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:258,0,715
chr4	106370816	rs2046880	A	T	635.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-5.240e-01;SOR=3.500;VQSLOD=17.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr4	106394380	rs2074396	C	A	486.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.650e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.00;SOR=0.382;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:303,27,0
chr4	106394926	rs17035642	G	A	6111.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=481;ExcessHet=3.0103;FS=4.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=-3.530e-01;SOR=1.015;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:248,233:481:99:6120,0,6477
chr4	106395181	rs4699179	G	A	9141.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.018e+00;DB;DP=200;ExcessHet=6.9897;FS=2.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=1.34;SOR=0.470;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,90:200:99:2589,0,3582
chr4	106406256	rs10007134	C	T	7814.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.56;DB;DP=86;ExcessHet=3.0103;FS=1.983;MQ=54.01;MQRankSum=-6.133e+00;QD=26.76;ReadPosRankSum=0.296;SOR=0.529;VQSLOD=-3.792e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2771,258,0
chr4	106474096	rs6533206	T	C	4217.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=0.876;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1328,123,0
chr4	106510470	rs2276970	A	G	898.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-1.400e-01;SOR=0.606;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,37:63:99:907,0,547
chr4	106534425	rs3214769	CAGAA	C	352.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=13;ExcessHet=3.0103;FS=5.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=-1.500e-01;SOR=3.258;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,9:13:99:361,0,227
chr4	106534691	rs2305212	A	G	630.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=0.479;SOR=0.662;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,26:64:99:639,0,937
chr4	106552414	rs2044536	A	G	818.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=21;ExcessHet=3.9794;FS=1.290;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=1.17;SOR=1.061;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:362,0,244
chr4	106552554	rs77096541	T	G	72.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.27;SOR=2.303;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	106580340	rs13147012	A	G	2456.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=110;ExcessHet=3.9794;FS=4.120;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-8.590e-01;SOR=0.997;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,52:110:99:1262,0,1519
chr4	106682153	.	AT	A	178.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-9.670e-01;SOR=2.584;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:8:36,0,8
chr4	106848314	rs4546247	C	T	2822.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.20;SOR=8.526;VQSLOD=24.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:853,63,0
chr4	106848703	rs10856978	C	T	2346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.25;SOR=6.027;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:510,39,0
chr4	106861557	rs4627867	A	T	4565.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.27;SOR=1.568;VQSLOD=18.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1306,102,0
chr4	106861730	rs4340795	A	G	9209.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=1.071;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:2966,306,0
chr4	106888263	rs4597836	A	C	260.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.34;ReadPosRankSum=0.992;SOR=1.179;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:62:170,0,62
chr4	106892210	rs4449421	T	G	1037.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.31;ReadPosRankSum=-1.350e-01;SOR=0.693;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:68:68,0,147
chr4	107016952	rs34901247	GA	G	460.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.070e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=0.524;SOR=0.487;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:201,21,0
chr4	107092559	rs11386971	T	TA	219.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=-7.920e-01;SOR=0.976;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:203,21,0
chr4	107154273	rs13138528	T	C	1281.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=2.584;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:484,42,0
chr4	107156365	rs7668276	C	G	1670.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=1.609;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:662,66,0
chr4	107156635	rs7693448	T	C	534.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=5.283;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:302,21,0
chr4	107158109	rs116744057	T	C	298.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.91;ReadPosRankSum=0.952;SOR=1.460;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:156,0,204
chr4	107158148	rs11938792	C	A	539.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.66;SOR=5.283;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:381,27,0
chr4	107165685	rs58634260	TA	T	344.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=26.52;SOR=3.767;VQSLOD=4.47;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:140,15,0
chr4	107168431	rs3775091	G	C	8621.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=1.317;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2746,270,0
chr4	107172377	rs13113845	C	G	3060.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=1.855;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1418,137,0
chr4	107173345	rs11942161	A	T	1047.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.13;SOR=5.283;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:236,18,0
chr4	107237689	rs115186370	G	C	2104.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=73;ExcessHet=3.9794;FS=2.513;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-5.400e-02;SOR=0.917;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,27:73:99:634,0,1216
chr4	108048977	rs2158182	A	C	7720.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=1.255;VQSLOD=17.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2494,243,0
chr4	108535708	rs3083991	A	AAC	79.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=2.303;VQSLOD=4.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	108566361	rs72241526	TA	T	536.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DB;DP=11;ExcessHet=6.9897;FS=2.908;MQ=59.96;MQRankSum=0.00;QD=9.76;ReadPosRankSum=0.989;SOR=0.197;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,9:11:14:186,0,14
chr4	108581002	rs11291153	GC	G	11296.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=0.852;VQSLOD=5.51;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3646,352,0
chr4	108608100	rs35832252	CTCTAACACT	C	1509.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=3.737;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:569,39,0
chr4	108615226	rs371693146	CT	C	2687.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=2.546;VQSLOD=5.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1345,135,0
chr4	108622241	rs17510783	C	T	1818.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.020e-01;DB;DP=37;ExcessHet=1.5490;FS=6.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=0.506;SOR=0.183;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1212,110,0
chr4	108622475	rs13110240	C	T	1237.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.850e+00;DB;DP=17;ExcessHet=1.5490;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-1.179e+00;SOR=1.037;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:603,51,0
chr4	108641035	rs2074371	C	A	790.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.806e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-1.608e+00;SOR=2.019;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:602,48,0
chr4	108641119	rs2522435	C	A	4804.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.031;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.08;ReadPosRankSum=-7.300e-02;SOR=2.332;VQSLOD=5.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1959,147,0
chr4	108641169	rs2074372	C	G	11111.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.67;DB;DP=109;ExcessHet=3.0103;FS=4.513;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.95;ReadPosRankSum=1.08;SOR=1.123;VQSLOD=6.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:4059,328,0
chr4	108641300	rs973126	T	C	27480.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=287;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=1.37;SOR=0.903;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,287:287:99:8934,859,0
chr4	108641317	rs1127006	G	A	11489.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=262;ExcessHet=1.5490;FS=1.934;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=-1.150e-01;SOR=0.534;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,262:262:99:8116,783,0
chr4	108641437	rs2074374	C	G	3792.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.47;DB;DP=59;ExcessHet=1.5490;FS=2.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=2.59;SOR=1.210;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2312,177,0
chr4	108641464	rs1319253	A	G	5633.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.92;SOR=5.170;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,43:43:99:1|1:108641464_A_G:1921,129,0:108641464
chr4	108641465	rs2189154	A	C	5633.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.14;SOR=5.136;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,42:42:99:1|1:108641464_A_G:1921,129,0:108641464
chr4	108911051	rs17550794	T	C	1438.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074e+00;DB;DP=158;ExcessHet=3.0103;FS=3.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=0.459;SOR=0.467;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,69:158:99:1447,0,2127
chr4	108926170	rs3775973	T	G	2021.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=19;ExcessHet=3.0103;FS=1.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.48;ReadPosRankSum=1.94;SOR=1.136;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:155,0,408
chr4	108931039	rs4956145	T	C	4293.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=35;ExcessHet=3.0103;FS=5.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-1.303e+00;SOR=0.336;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,9:35:99:212,0,864
chr4	108931133	.	CT	C	158.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.93;ReadPosRankSum=1.10;SOR=0.906;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:19:63:63,0,181
chr4	108935770	rs7677408	T	C	5646.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.018e+00;DB;DP=61;ExcessHet=3.0103;FS=3.023;MQ=59.96;MQRankSum=1.19;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=1.85;SOR=0.429;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,35:61:99:681,0,653
chr4	108935871	rs4956147	G	A	1479.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.589;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.59;ReadPosRankSum=-5.890e-01;SOR=4.565;VQSLOD=13.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:12:263,0,12
chr4	108944579	rs4956032	C	T	5903.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=51;ExcessHet=3.0103;FS=11.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=0.961;SOR=1.677;VQSLOD=17.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:766,0,545
chr4	108944821	rs4956033	C	T	2995.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.791e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.89;ReadPosRankSum=0.959;SOR=0.859;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:442,0,375
chr4	108944846	rs4956034	A	G	2057.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.598e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=38.16;ReadPosRankSum=0.523;SOR=1.329;VQSLOD=22.82;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,11:15:99:386,0,119
chr4	108953281	rs61327377	CTCTTT	C	2185.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=0.361;SOR=5.097;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,9:12:99:369,0,179
chr4	108954092	rs4552543	T	C	752.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.74;SOR=4.407;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	108955120	rs4533834	G	T	704.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.00;SOR=5.784;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr4	108955150	rs4422481	C	T	452.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.140;SOR=1.414;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:96:96,0,111
chr4	108969590	rs4245927	A	G	1730.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=1.78;SOR=0.461;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:221,0,442
chr4	108985388	rs4613638	A	G	5503.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DB;DP=60;ExcessHet=3.0103;FS=3.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=0.431;SOR=1.098;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,27:60:99:628,0,728
chr4	108991979	rs2276335	C	T	1142.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587e+00;DB;DP=14;ExcessHet=3.0103;FS=4.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.08;ReadPosRankSum=0.557;SOR=3.026;VQSLOD=19.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:203,0,231
chr4	108999201	rs10712183	CA	C	277.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.524;SOR=1.179;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:43:75,0,43
chr4	108999300	rs4956156	G	T	4850.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.710e-01;DB;DP=48;ExcessHet=3.0103;FS=1.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=-6.330e-01;SOR=1.097;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,29:48:99:877,0,501
chr4	108999366	rs4956157	G	A	5702.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;DB;DP=100;ExcessHet=3.9794;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=-6.600e-02;SOR=0.573;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,58:100:99:1482,0,998
chr4	109000418	rs11730239	G	A	507.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.253;SOR=2.303;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:34:98,0,34
chr4	109000536	rs6819640	T	C	1897.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.299e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.13;ReadPosRankSum=-8.270e-01;SOR=1.136;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:403,0,170
chr4	109002986	rs7681524	T	C	2048.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=20;ExcessHet=3.0103;FS=4.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=0.723;SOR=1.793;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:344,0,238
chr4	109010207	rs16996935	A	G	4335.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.50;ReadPosRankSum=0.016;SOR=0.792;VQSLOD=6.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,13:37:99:375,0,726
chr4	109461985	rs17583662	A	G	2293.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=69;ExcessHet=3.9794;FS=0.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.862;SOR=0.759;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,41:69:99:1010,0,634
chr4	109477779	rs7686569	G	T	507.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.84;SOR=2.985;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
chr4	109478108	rs11731416	C	G	4766.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.99;SOR=0.850;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2190,213,0
chr4	109541499	rs7677415	C	T	5378.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=182;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.55;SOR=0.883;VQSLOD=20.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,182:182:99:5395,546,0
chr4	109541603	rs3796936	T	A	2275.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.788e+00;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=-1.306e+00;SOR=1.038;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,72:73:99:2292,175,0
chr4	109541616	rs3796935	T	C	2947.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.900e-02;DB;DP=62;ExcessHet=1.5490;FS=4.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=2.31;SOR=0.369;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,61:62:99:1949,149,0
chr4	109541661	rs3796934	T	G	638.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=3.383;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:655,51,0
chr4	109576622	rs113336375	C	CAAAAA	519.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.76;SOR=3.258;VQSLOD=4.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:9:129,9,0
chr4	109576843	rs2851380	G	T	1748.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=1.412;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:578,57,0
chr4	109578572	rs2851379	G	A	2934.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=5.031;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:869,72,0
chr4	109588238	rs2851374	G	C	689.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.400e-02;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=-2.640e-01;SOR=0.779;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:439,42,0
chr4	109664819	rs6533381	T	C	6126.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.74;SOR=3.536;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1585,117,0
chr4	109664820	rs7664898	G	C	3105.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=38;ExcessHet=1.5490;FS=5.311;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.40;ReadPosRankSum=1.32;SOR=1.845;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:694,0,439
chr4	109665016	rs10035050	A	G	2582.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=95;ExcessHet=3.9794;FS=2.996;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.18;ReadPosRankSum=1.63;SOR=0.890;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,40:95:99:894,0,1344
chr4	109669051	rs28579256	A	T	203.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.524;SOR=1.085;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,110
chr4	109669319	rs33958723	TA	T	2310.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.933;DB;DP=55;ExcessHet=1.5490;FS=0.912;MQ=60.00;MQRankSum=0.00;QD=20.27;ReadPosRankSum=3.19;SOR=0.903;VQSLOD=4.59;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:23,32:55:99:708,0,451
chr4	109670701	.	CA	C	555.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.468e+00;DP=12;ExcessHet=1.5490;FS=2.620;MQ=60.00;MQRankSum=0.00;QD=14.25;ReadPosRankSum=1.47;SOR=2.030;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:340,36,0
chr4	109674116	rs1377210	A	G	3345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=146;ExcessHet=3.9794;FS=0.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-1.720e-01;SOR=0.722;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,63:146:99:1567,0,2113
chr4	109677434	rs73840706	A	G	509.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.907e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=0.825;SOR=0.723;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:83:303,0,83
chr4	109677752	rs75900639	A	G	1242.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=29;ExcessHet=1.5490;FS=3.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=-3.710e-01;SOR=1.620;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:474,0,363
chr4	109677855	rs143319836	GC	G	180.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.189;SOR=0.859;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:94:94,0,94
chr4	109681267	rs61525227	A	G	2732.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e-01;DB;DP=54;ExcessHet=1.5490;FS=1.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=0.242;SOR=0.505;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,28:54:99:705,0,686
chr4	109683509	rs57603342	A	G	1919.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.601e+00;DB;DP=81;ExcessHet=3.9794;FS=0.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.78;SOR=0.634;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,35:81:99:785,0,1238
chr4	109683688	rs3733622	G	A	1523.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=56;ExcessHet=3.9794;FS=1.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.616;SOR=0.939;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:668,0,1014
chr4	109748008	rs59553764	CAGTT	C	208.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.72;SOR=3.611;VQSLOD=6.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr4	109762918	rs11942576	C	A	4073.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.430e-01;DB;DP=63;ExcessHet=3.0103;FS=4.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=0.221;SOR=0.388;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1806,188,0
chr4	109766177	rs10015534	G	C	2099.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=6.479;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:395,30,0
chr4	109766290	rs11098004	T	G	5833.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=68;ExcessHet=3.0103;FS=2.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.93;ReadPosRankSum=1.07;SOR=0.902;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,67:68:99:2275,194,0
chr4	109767453	rs5860952	C	CA	5059.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.34;SOR=2.138;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:109767453_C_CA:1631,117,0:109767453
chr4	109767469	rs115566592	T	C	468.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=30;ExcessHet=3.0103;FS=7.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.61;ReadPosRankSum=-1.040e-01;SOR=2.584;VQSLOD=17.94;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,14:30:99:0|1:109767453_C_CA:477,0,388:109767453
chr4	109769844	rs13130308	C	T	731.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DB;DP=25;ExcessHet=3.9794;FS=6.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.984;SOR=0.211;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:326,0,438
chr4	109769899	rs13135591	C	T	2232.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=50;ExcessHet=3.9794;FS=0.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-2.280e-01;SOR=0.759;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1354,148,0
chr4	109774291	rs1563002	A	T	1416.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.12;SOR=5.892;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:432,36,0
chr4	109782249	rs13133634	C	T	962.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.520e-01;DB;DP=13;ExcessHet=3.9794;FS=3.183;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=1.41;SOR=1.445;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:150,0,128
chr4	109810573	.	ATTTT	A	821.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.74;MQRankSum=0.00;QD=34.21;ReadPosRankSum=1.74;SOR=1.085;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:39:153,0,39
chr4	109811003	rs12641411	T	C	3567.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.240e-01;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=-9.450e-01;SOR=0.776;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:474,0,424
chr4	109817962	rs10856995	C	T	5427.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.720e-01;DB;DP=49;ExcessHet=3.0103;FS=6.376;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=0.644;SOR=1.669;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,22:49:99:689,0,801
chr4	109820141	rs144167011	A	ATATATCTC	1459.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.07;ReadPosRankSum=1.65;SOR=1.675;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:99:0|1:109820141_A_ATATATCTC:117,0,341:109820141
chr4	109820167	rs6853028	A	C	3270.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.64;ReadPosRankSum=0.250;SOR=1.090;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,8:14:99:0|1:109820141_A_ATATATCTC:315,0,702:109820141
chr4	109820195	rs6853368	C	A	5088.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.870e-01;DB;DP=28;ExcessHet=3.0103;FS=4.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.81;ReadPosRankSum=1.77;SOR=0.323;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,11:28:99:0|1:109820141_A_ATATATCTC:439,0,1413:109820141
chr4	109820202	rs6853372	C	T	5400.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=34;ExcessHet=3.0103;FS=3.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=0.840;SOR=0.350;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,14:34:99:0|1:109820141_A_ATATATCTC:507,0,1438:109820141
chr4	109820446	rs6830868	T	C	1525.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.47;ReadPosRankSum=0.248;SOR=0.721;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:377,0,280
chr4	109820477	rs6533393	T	C	806.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.82;ReadPosRankSum=0.464;SOR=2.833;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:125,0,178
chr4	109841889	rs5860955	G	GA	1699.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.350e-01;DB;DP=31;ExcessHet=3.9794;FS=0.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-4.770e-01;SOR=0.874;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,14:31:99:306,0,395
chr4	109842038	rs2030844	T	A	3923.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=56;ExcessHet=3.9794;FS=4.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=1.68;SOR=1.043;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,26:56:99:671,0,720
chr4	109863159	rs7677050	T	C	2098.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=0.227;SOR=0.586;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:247,0,441
chr4	109895718	rs70949061	GA	G	897.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=26;ExcessHet=3.9794;FS=0.977;MQ=60.00;MQRankSum=0.00;QD=12.64;ReadPosRankSum=0.330;SOR=0.508;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,12:26:99:296,0,356
chr4	109971378	rs1863291	T	C	331.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.793e+00;DB;DP=30;ExcessHet=3.0103;FS=1.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-4.160e-01;SOR=0.774;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:340,0,358
chr4	110370552	.	C	CTT	117.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DP=6;ExcessHet=6.9897;FS=0.000;MQ=59.57;MQRankSum=0.00;QD=4.53;ReadPosRankSum=0.253;SOR=0.202;VQSLOD=5.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:46:46,0,105
chr4	110370867	rs13123618	C	T	747.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.255;DB;DP=13;ExcessHet=3.9794;FS=7.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=0.751;SOR=3.056;VQSLOD=16.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:537,39,0
chr4	110384047	rs70949082	G	GCTTTT	6970.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=3.752;VQSLOD=5.62;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1980,132,0
chr4	110569547	rs726585	T	C	164.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=3.258;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:110569547_T_C:90,6,0:110569547
chr4	110569555	rs726584	G	A	164.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.43;SOR=3.258;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:110569547_T_C:90,6,0:110569547
chr4	110569592	rs726583	A	T	185.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.70;SOR=3.611;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	110580084	rs1543812	G	T	752.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.31;ReadPosRankSum=0.480;SOR=0.502;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,196
chr4	110580436	rs5860986	G	GC	1238.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.29;SOR=3.981;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr4	110585578	rs11405576	C	CT	180.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.846;DB;DP=13;ExcessHet=3.9794;FS=3.309;MQ=59.96;MQRankSum=0.00;QD=6.23;ReadPosRankSum=-4.140e-01;SOR=1.371;VQSLOD=5.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:13:88:92,0,88
chr4	110585645	rs767598	G	A	651.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=4.294;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr4	110602430	rs4698780	T	G	2139.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.51;SOR=1.888;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1238,114,0
chr4	110603784	rs3733611	T	C	6647.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=0.703;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3646,340,0
chr4	110605744	rs13846	A	T	2316.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=62;ExcessHet=3.9794;FS=4.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.902;SOR=1.031;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,30:62:99:758,0,816
chr4	110606332	.	TC	T	42.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287e+00;DP=10;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;QD=4.23;ReadPosRankSum=-9.670e-01;SOR=0.012;VQSLOD=3.73;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,2:10:51:51,0,293
chr4	110606394	rs3214165	C	CT	1653.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.790e-01;DB;DP=27;ExcessHet=3.0103;FS=5.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=1.74;SOR=0.265;VQSLOD=6.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,26:27:53:712,53,0
chr4	110606713	rs2285712	T	C	432.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=5.136;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:144,12,0
chr4	110608536	rs13151303	C	T	1493.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.98;SOR=4.073;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:471,39,0
chr4	110608967	rs5030606	G	A	241.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.41;SOR=3.912;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	110619534	rs2301717	T	G	1695.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=39;ExcessHet=1.5490;FS=10.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=-6.010e-01;SOR=2.102;VQSLOD=17.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,14:39:99:369,0,636
chr4	110635488	rs2498	G	GT	946.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.240e-01;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.06;ReadPosRankSum=-9.960e-01;SOR=2.368;VQSLOD=5.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:148,0,257
chr4	110635887	.	ATT	A	152.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.74;ReadPosRankSum=0.385;SOR=0.473;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:9:62:62,0,72
chr4	110638810	rs2285714	C	T	6421.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=115;ExcessHet=1.5490;FS=4.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=0.546;SOR=1.005;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,58:115:99:1374,0,1403
chr4	110651146	rs11555260	C	A	37.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=18.81;SOR=0.693;VQSLOD=15.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	110661937	rs551	G	A	8710.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=0.969;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2260,208,0
chr4	110670807	rs7441380	G	C	6381.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=1.209;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2014,180,0
chr4	110678925	rs11098044	T	C	3063.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=0.870;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:667,66,0
chr4	110678979	rs146158558	T	TTTTAA	3047.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.09;SOR=0.854;VQSLOD=5.66;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:110678979_T_TTTTAA:765,51,0:110678979
chr4	110679002	rs7437142	G	T	3144.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.70;SOR=1.061;VQSLOD=18.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:69:1|1:110678979_T_TTTTAA:949,69,0:110678979
chr4	110679378	rs62324897	T	C	460.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=5.136;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr4	110681121	rs7683027	G	A	993.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.42;SOR=5.058;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr4	110681618	rs4382037	C	T	11217.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=33.19;SOR=0.754;VQSLOD=4.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3405,305,0
chr4	110686001	rs11098045	A	G	391.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.71;SOR=4.804;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr4	110722886	rs7671905	T	C	95.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=0.524;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:39,3,0
chr4	110737389	rs2276326	T	C	4027.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.45;DB;DP=41;ExcessHet=3.0103;FS=10.594;MQ=60.00;MQRankSum=0.00;QD=30.51;ReadPosRankSum=0.00;SOR=2.000;VQSLOD=15.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1602,123,0
chr4	110737549	rs6828254	G	A	12558.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.87;SOR=0.703;VQSLOD=3.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4257,398,0
chr4	110745425	rs3188897	G	A	5598.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.039e+00;DB;DP=55;ExcessHet=3.0103;FS=3.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-2.090e-01;SOR=1.078;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1833,164,0
chr4	110763413	rs7438763	A	G	77.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.89;SOR=1.179;VQSLOD=18.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr4	110763930	rs6842245	C	T	1179.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=6.736;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr4	110765361	rs7681770	T	G	9283.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=1.732;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2419,230,0
chr4	110765372	rs7657133	A	G	8475.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=2.189;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2365,216,0
chr4	110773048	rs61745483	C	A	2891.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=0.969;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2908,288,0
chr4	110773067	rs4698797	G	A	6457.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=0.936;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2821,277,0
chr4	110786290	rs7679048	C	T	4161.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.94;SOR=1.414;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1579,164,0
chr4	110786517	rs7679303	A	G	1562.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.03;ReadPosRankSum=1.19;SOR=2.786;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,15:16:8:484,8,0
chr4	110790911	rs764205	A	T	5422.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.89;SOR=1.207;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2212,194,0
chr4	110861916	rs11568884	C	T	69.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.91;SOR=2.303;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	110866526	rs7661766	A	T	872.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.179;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=-7.520e-01;SOR=0.569;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:687,75,0
chr4	110866582	rs7661968	A	T	500.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=2.448;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:517,45,0
chr4	110883121	rs11568943	G	A	2137.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.28;SOR=0.720;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2154,218,0
chr4	110883344	rs929446	C	T	188.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.29;SOR=3.611;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr4	110885868	rs2190907	T	C	1856.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=0.937;SOR=3.788;VQSLOD=15.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:571,42,0
chr4	110901198	rs2237051	G	A	5751.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.877e+00;DB;DP=92;ExcessHet=3.9794;FS=1.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=-1.015e+00;SOR=0.617;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2793,274,0
chr4	110902111	rs11569017	A	T	3480.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.626;DB;DP=116;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.00;ReadPosRankSum=0.391;SOR=0.895;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,113:116:99:3497,257,0
chr4	110904502	rs6825106	G	A	607.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.97;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.95;ReadPosRankSum=0.908;SOR=1.358;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:365,30,0
chr4	110910016	rs2074390	G	A	438.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=0.293;SOR=2.049;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr4	110914427	rs4698803	A	T	5727.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.68;SOR=1.121;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2002,204,0
chr4	110925492	rs3733626	C	A	142.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=0.967;SOR=1.981;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	110929128	rs11569121	G	A	109.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.65;SOR=2.833;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr4	110929653	rs11569126	G	A	70.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.41;SOR=2.303;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr4	111026520	rs3733623	A	G	456.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.38;ReadPosRankSum=-3.490e-01;SOR=0.776;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:236,21,0
chr4	111026927	rs10011926	C	T	71.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=2.303;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	111398208	rs10004516	A	G	5137.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.18;SOR=3.001;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1392,117,0
chr4	111398252	rs11734805	C	A	347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.640e-01;DB;DP=18;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=-6.220e-01;SOR=2.147;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:356,0,253
chr4	111409705	rs1126483	T	C	3009.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=70;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=-9.340e-01;SOR=0.723;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,34:70:99:923,0,936
chr4	111409925	rs3796891	A	G	646.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-3.070e-01;SOR=0.465;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,22:35:99:655,0,374
chr4	111431182	rs9998275	A	G	56.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=1.65;SOR=1.609;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,102
chr4	111436741	rs3733596	C	G	778.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.45;ReadPosRankSum=-1.282e+00;SOR=2.925;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:371,27,0
chr4	111437103	rs2348432	C	T	5302.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.15;SOR=1.246;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:111437103_C_T:1464,132,0:111437103
chr4	111437127	rs2348433	A	C	3504.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DB;DP=36;ExcessHet=3.0103;FS=2.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.45;ReadPosRankSum=-4.870e-01;SOR=1.043;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,14:36:99:0|1:111437103_C_T:320,0,565:111437103
chr4	111454153	rs671841	A	G	6678.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=2.629;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2000,164,0
chr4	111463708	rs482254	T	A	468.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=0.524;SOR=1.508;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:100,0,61
chr4	111480920	rs6533525	G	A	1003.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.751e+00;DB;DP=66;ExcessHet=3.0103;FS=2.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.966;SOR=1.146;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,36:66:99:1012,0,901
chr4	111781650	rs10213399	C	T	2136.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.291;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.88;ReadPosRankSum=-2.068e+00;SOR=0.943;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:814,81,0
chr4	113066831	rs10002700	G	A	1781.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.20;SOR=1.034;VQSLOD=18.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:836,87,0
chr4	113178894	rs147158310	ATTTGT	A	1984.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.591;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.64;ReadPosRankSum=1.21;SOR=0.906;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:765,51,0
chr4	113179077	rs4834247	C	T	1400.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.920e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=-1.510e+00;SOR=1.280;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:113179077_C_T:419,30,0:113179077
chr4	113179080	rs4834248	A	T	1367.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=-8.760e-01;SOR=1.230;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:113179077_C_T:419,30,0:113179077
chr4	113198805	rs701758	G	C	279.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=2.833;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	113198882	rs5861094	TGA	T	499.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=-1.068e+00;SOR=2.448;VQSLOD=6.45;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:113198882_TGA_T:315,21,0:113198882
chr4	113198885	rs5861095	TAA	T	499.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;ReadPosRankSum=-1.350e-01;SOR=2.448;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:113198882_TGA_T:315,21,0:113198882
chr4	113198888	rs5861096	TAC	T	499.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=2.448;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:113198882_TGA_T:315,21,0:113198882
chr4	113199075	rs701759	A	G	4886.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.28;DB;DP=63;ExcessHet=3.0103;FS=6.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.86;ReadPosRankSum=-1.479e+00;SOR=0.969;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2084,188,0
chr4	113199691	rs6834298	C	T	1125.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.020e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=1.03;SOR=0.813;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:440,36,0
chr4	113303445	.	CTTTT	C	2396.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DP=29;ExcessHet=3.9794;FS=4.985;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.28;ReadPosRankSum=0.305;SOR=1.609;VQSLOD=6.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,10:29:99:526,0,216
chr4	113332789	rs78234570	G	A	268.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DB;DP=23;ExcessHet=3.0103;FS=1.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.031;SOR=1.218;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:277,0,267
chr4	113344685	rs1989924	C	T	2056.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.062;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.22;ReadPosRankSum=0.491;SOR=0.647;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:324,0,495
chr4	113344826	rs1989925	A	G	5769.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.320e-01;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=1.98;SOR=0.710;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,20:62:99:424,0,1122
chr4	113344925	rs1989926	C	T	3978.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.288;DB;DP=51;ExcessHet=3.9794;FS=0.495;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.00;ReadPosRankSum=-6.430e-01;SOR=0.731;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,9:51:99:136,0,1136
chr4	113346996	rs10017209	G	A	1436.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-5.400e-02;SOR=0.607;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:564,0,624
chr4	113347496	rs9994944	A	G	2226.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=26;ExcessHet=3.9794;FS=3.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=1.56;SOR=1.151;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:329,0,460
chr4	113348504	rs56997105	TATAC	T	2019.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=33.50;ReadPosRankSum=-9.670e-01;SOR=4.758;VQSLOD=1.42;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,8:9:99:0|1:113348504_TATAC_T:375,0,370:113348504
chr4	113348511	.	GTTTGATATAAAACATGTATTTTTAAAAATAGTATTTTTAAAAATAGTATTTTTAAAAA	G	1993.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.69;DP=15;ExcessHet=3.9794;FS=4.180;MQ=59.96;MQRankSum=0.00;QD=25.90;ReadPosRankSum=-6.740e-01;SOR=2.753;VQSLOD=4.83;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,9:15:99:0|1:113348504_TATAC_T:361,0,1294:113348504
chr4	113349020	rs4834277	C	G	1006.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.474e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=2.78;SOR=1.105;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:211,0,320
chr4	113350154	rs35133578	C	A	508.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.63;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=1.31;SOR=0.495;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,5:16:99:132,0,354
chr4	113350415	rs11944513	C	T	4632.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=89;ExcessHet=1.5490;FS=11.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=1.35;SOR=1.538;VQSLOD=17.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,45:89:99:1123,0,1037
chr4	113350498	rs17444613	C	G	1142.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=-5.300e-02;SOR=0.756;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:494,0,317
chr4	113351521	rs1029447	G	T	663.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.615e+00;DB;DP=16;ExcessHet=3.9794;FS=2.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=0.619;SOR=0.223;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:252,0,247
chr4	113352397	rs2074388	G	A	6884.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.360e-01;DB;DP=104;ExcessHet=3.9794;FS=13.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=1.02;SOR=0.602;VQSLOD=15.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3338,311,0
chr4	113352628	rs13148353	A	G	8512.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.220e-01;DB;DP=86;ExcessHet=3.0103;FS=6.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=1.67;SOR=0.726;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,85:86:99:2686,219,0
chr4	113352899	rs2074379	G	A	3142.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.141e+00;DB;DP=50;ExcessHet=3.9794;FS=2.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.76;ReadPosRankSum=-1.564e+00;SOR=0.902;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1683,150,0
chr4	113353285	rs11726117	T	C	9088.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.600e-01;DB;DP=119;ExcessHet=3.0103;FS=1.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=-4.910e-01;SOR=0.570;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3725,357,0
chr4	113353842	rs6841595	A	C	3453.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.449;DB;DP=33;ExcessHet=3.0103;FS=3.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.69;ReadPosRankSum=0.965;SOR=1.395;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1185,99,0
chr4	113356116	rs2023827	T	C	227.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=2.584;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:121,12,0
chr4	113356495	rs11098156	G	T	1492.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.699e+00;DB;DP=35;ExcessHet=1.5490;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-5.460e-01;SOR=0.327;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1167,104,0
chr4	113359703	rs231247	A	G	8438.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.520e-01;DB;DP=93;ExcessHet=3.0103;FS=1.223;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=-1.677e+00;SOR=0.574;VQSLOD=6.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2862,279,0
chr4	113361968	rs56115954	A	AGTGTGTGT	228.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DB;DP=1;ExcessHet=3.9794;FS=0.000;MQ=58.58;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=1.04;SOR=0.399;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:6:76,6,0
chr4	113362316	rs1486868	A	G	8009.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.134;DB;DP=132;ExcessHet=3.9794;FS=2.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.18;ReadPosRankSum=0.538;SOR=0.552;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,131:132:99:3976,353,0
chr4	113436044	rs901474	T	G	7289.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=79;ExcessHet=3.0103;FS=2.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.81;ReadPosRankSum=-7.460e-01;SOR=0.502;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2834,238,0
chr4	113506885	.	CA	C	69.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DP=18;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=1.47;ReadPosRankSum=-6.800e-01;SOR=0.812;VQSLOD=5.03;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:18:52:52,0,297
chr4	113509220	rs11298103	TA	T	675.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=26.47;SOR=4.514;VQSLOD=4.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr4	113524610	rs56165143	A	G	357.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=25;ExcessHet=3.0103;FS=2.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.463;SOR=0.276;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:366,0,389
chr4	113570639	rs4513633	C	A	905.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.207e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=0.542;SOR=0.562;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,15:16:7:452,7,0
chr4	113578601	rs55791980	T	C	247.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=17;ExcessHet=3.0103;FS=3.140;MQ=59.27;MQRankSum=-1.076e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.684;SOR=2.093;VQSLOD=-3.519e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:256,0,342
chr4	114028168	rs13134980	C	T	784.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.031e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-3.110e-01;SOR=0.223;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:214,0,220
chr4	114067233	rs3112981	G	A	1827.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-02;DB;DP=39;ExcessHet=3.9794;FS=4.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=1.01;SOR=1.341;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,19:39:99:451,0,580
chr4	114081584	rs17590579	G	A	670.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=28;ExcessHet=3.9794;FS=0.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=1.36;SOR=0.873;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:401,0,257
chr4	114153242	.	T	C	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.090;DP=34;ExcessHet=3.0103;FS=2.026;MQ=60.00;MQRankSum=0.00;QD=12.18;ReadPosRankSum=0.998;SOR=1.230;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:423,0,609
chr4	114171154	rs362495	A	G	402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.360e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.657;SOR=0.622;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:130,0,184
chr4	114185878	rs11452087	C	CA	588.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.32;ReadPosRankSum=0.906;SOR=0.919;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:135,0,116
chr4	114267023	rs9968405	G	A	5804.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=30.71;SOR=1.487;VQSLOD=4.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1483,150,0
chr4	114269552	rs2272235	G	A	1136.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.981;SOR=0.677;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:625,0,676
chr4	114275243	rs33966911	C	T	2197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=199;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-2.230e-01;SOR=0.726;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,87:199:99:2206,0,2690
chr4	114276880	rs28377576	T	C	1235.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628e+00;DB;DP=65;ExcessHet=3.0103;FS=4.895;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=-4.330e-01;SOR=1.012;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,32:65:99:0|1:114276880_T_C:1244,0,2229:114276880
chr4	114276884	rs3733615	A	G	1732.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.950e-01;DB;DP=65;ExcessHet=3.9794;FS=9.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=-1.250e-01;SOR=0.971;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,32:65:99:0|1:114276880_T_C:1244,0,2229:114276880
chr4	114279422	rs10013743	A	G	860.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;DB;DP=75;ExcessHet=3.0103;FS=0.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-1.490e-01;SOR=0.833;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,33:75:99:869,0,1199
chr4	114284645	rs35728190	C	T	1210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.157e+00;DB;DP=107;ExcessHet=3.0103;FS=1.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.943;SOR=0.883;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,48:107:99:1219,0,1623
chr4	114286357	.	ATG	A,ATGTGTGTG	1783.36	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.63;QD=28.31;SOR=3.442;VQSLOD=4.55;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,10,7:20:99:573,282,296,320,0,394
chr4	114289147	rs55966162	A	G	83.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=0.431;SOR=0.368;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:92,0,61
chr4	114289170	rs13137710	G	A	108.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:117,0,27
chr4	114293451	rs13115314	C	T	48.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.11;ReadPosRankSum=0.253;SOR=0.307;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:57:57,0,139
chr4	114294308	rs2293324	T	C	2327.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.570e-01;DB;DP=87;ExcessHet=3.9794;FS=0.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-7.300e-02;SOR=0.778;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1084,0,1005
chr4	114299187	rs34564840	ATTGT	A	580.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877e+00;DB;DP=27;ExcessHet=3.0103;FS=6.368;MQ=59.86;MQRankSum=-8.200e-01;POSITIVE_TRAIN_SITE;QD=21.49;ReadPosRankSum=-1.123e+00;SOR=0.061;VQSLOD=0.101;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,15:27:99:589,0,669
chr4	114299347	rs17483231	A	C	733.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.406e+00;DB;DP=62;ExcessHet=3.0103;FS=2.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-1.592e+00;SOR=0.445;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,32:62:99:742,0,764
chr4	114310106	.	CTG	C	490.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.310e-01;DP=12;ExcessHet=6.9897;FS=2.944;MQ=60.00;MQRankSum=0.00;QD=12.91;ReadPosRankSum=-4.410e-01;SOR=0.185;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:12:65:225,0,65
chr4	114375408	rs202106323	TG	T	72.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.11;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:8:0|1:114375408_TG_T:81,0,8:114375408
chr4	114375412	.	T	A	72.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.82;ReadPosRankSum=0.00;SOR=0.793;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:8:0|1:114375408_TG_T:81,0,8:114375408
chr4	114421712	rs17446453	C	T	681.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.183e+00;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=-7.910e-01;SOR=0.631;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,28:57:99:690,0,791
chr4	114426077	rs5861139	CA	C	938.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=10.20;ReadPosRankSum=0.330;SOR=0.675;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,27:42:99:573,0,269
chr4	114426315	rs4834348	G	T	654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.69;ReadPosRankSum=-1.493e+00;SOR=0.509;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:663,0,278
chr4	114429407	rs11098193	C	T	500.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-9.060e-01;SOR=0.807;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,23:36:99:509,0,347
chr4	114458402	rs734348	G	A	1291.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.634e+00;DB;DP=35;ExcessHet=1.5490;FS=1.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=-9.740e-01;SOR=1.091;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,23:35:99:625,0,335
chr4	114582860	rs3775975	C	T	167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.590e-01;DB;DP=18;ExcessHet=3.0103;FS=2.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.29;ReadPosRankSum=-1.869e+00;SOR=0.223;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:176,0,252
chr4	114823191	rs2374215	A	G	337.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=3.056;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:152,12,0
chr4	114899495	rs187295625	C	T	180.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.498e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.39;ReadPosRankSum=-9.760e-01;SOR=0.859;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:189,0,165
chr4	115543915	rs140050532	A	AT,ATT	844.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=-4.470e-01;SOR=3.556;VQSLOD=5.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,7,6:14:99:348,130,119,147,0,163
chr4	115544714	rs6851610	A	G	11257.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=0.740;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3642,344,0
chr4	115577997	rs34115976	C	G	214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.658;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=-3.200e-02;SOR=0.627;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,7:24:99:223,0,516
chr4	115585029	rs11731984	C	G	902.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.071e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=0.00;SOR=1.312;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:111,0,261
chr4	115586696	rs4833463	A	G	1980.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=1.91;SOR=0.546;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:705,51,0
chr4	115586972	.	CT	C	257.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DP=47;ExcessHet=3.9794;FS=0.771;MQ=60.00;MQRankSum=0.00;QD=3.96;ReadPosRankSum=1.06;SOR=0.539;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:30,9:47:99:117,0,670
chr4	115589159	rs6831964	C	T	1794.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.77;POSITIVE_TRAIN_SITE;QD=34.51;SOR=2.790;VQSLOD=4.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:416,36,0
chr4	115589302	rs11098261	A	G	5598.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=0.890;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1411,135,0
chr4	115858411	.	C	T	285.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.58;ReadPosRankSum=0.528;SOR=1.022;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:294,0,362
chr4	115898200	rs56019717	G	A	214.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567e+00;DB;DP=18;ExcessHet=3.0103;FS=3.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=1.50;SOR=1.911;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:223,0,383
chr4	115898522	rs13115130	A	T	685.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.66;ReadPosRankSum=0.431;SOR=2.400;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:53:221,0,53
chr4	115997006	rs1383000	T	C	853.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=-5.890e-01;SOR=4.977;VQSLOD=13.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:15:264,0,15
chr4	118976318	rs7687849	C	T	1221.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.42;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=1.37;SOR=0.588;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:458,36,0
chr4	119026033	rs12508017	T	A	353.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.16;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr4	119035948	rs5861378	T	TC	12008.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.175e+00;DB;DP=159;ExcessHet=3.0103;FS=1.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=-2.900e-01;SOR=0.907;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4881,484,0
chr4	119064668	rs3749506	G	A	551.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.534e+00;DB;DP=10;ExcessHet=3.9794;FS=2.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=0.283;SOR=0.269;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:33:309,33,0
chr4	119161619	rs641962	A	G	7956.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=90;ExcessHet=3.0103;FS=0.554;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=-6.240e-01;SOR=0.767;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2770,270,0
chr4	119161795	rs617430	G	A	7087.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=111;ExcessHet=3.9794;FS=1.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=1.43;SOR=0.789;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3692,333,0
chr4	119174563	rs609512	T	A	557.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.70;DB;DP=5;ExcessHet=3.9794;FS=6.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=0.623;SOR=2.797;VQSLOD=18.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr4	119174640	rs5861382	CT	C	2423.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.120e-01;DB;DP=27;ExcessHet=3.0103;FS=2.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.752;SOR=0.349;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,27:27:81:752,81,0
chr4	119200274	rs658642	C	T	4465.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=74;ExcessHet=3.9794;FS=0.989;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=0.416;SOR=0.776;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2451,222,0
chr4	119217114	rs788665	C	G	5103.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.32;SOR=2.704;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1376,120,0
chr4	119219684	rs788668	T	C	703.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.430e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.59;ReadPosRankSum=-4.690e-01;SOR=2.400;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr4	119239900	rs705838	C	A	501.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.50;ReadPosRankSum=1.65;SOR=2.712;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	119273712	rs13119545	C	G	12310.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.506e+00;DB;DP=218;ExcessHet=3.9794;FS=2.549;MQ=59.98;MQRankSum=0.00;QD=17.10;ReadPosRankSum=0.980;SOR=0.876;VQSLOD=5.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,218:218:99:6510,654,0
chr4	119409225	rs200730203	C	T	91.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=19;ExcessHet=3.9794;FS=2.466;MQ=54.80;MQRankSum=-3.213e+00;NEGATIVE_TRAIN_SITE;QD=2.17;ReadPosRankSum=0.551;SOR=1.501;VQSLOD=-3.060e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,4:19:70:70,0,484
chr4	119424307	rs7356190	T	C	257.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=53.59;MQRankSum=-1.383e+00;NEGATIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-3.660e-01;SOR=1.460;VQSLOD=-2.099e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:39:39,0,68
chr4	119436576	rs371723815	CT	C	99.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.9794;FS=3.310;MQ=51.59;MQRankSum=0.00;QD=9.92;ReadPosRankSum=1.65;SOR=2.303;VQSLOD=4.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:41:41,0,65
chr4	119461590	rs189597910	C	T	857.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=-1.939e+00;SOR=0.622;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,32:66:99:866,0,845
chr4	119551603	.	A	T	206.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DP=35;ExcessHet=3.0103;FS=3.463;MQ=49.90;MQRankSum=-3.987e+00;NEGATIVE_TRAIN_SITE;QD=5.89;ReadPosRankSum=0.283;SOR=0.620;VQSLOD=-3.403e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,9:35:99:215,0,790
chr4	119551832	rs201707823	G	A	617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540e-01;DB;DP=75;ExcessHet=3.9794;FS=6.386;MQ=48.08;MQRankSum=-3.431e+00;QD=2.97;ReadPosRankSum=0.966;SOR=1.226;VQSLOD=-3.308e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,11:75:85:85,0,1816
chr4	119609039	rs9968326	G	A	6337.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.48;SOR=0.760;VQSLOD=19.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1739,180,0
chr4	119609182	.	CT	C	169.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DP=14;ExcessHet=6.9897;FS=0.000;MQ=59.69;MQRankSum=0.756;QD=3.47;ReadPosRankSum=-1.670e-01;SOR=0.871;VQSLOD=0.271;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,3:14:18:18,0,189
chr4	119609246	rs13130107	A	G	247.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=0.967;SOR=0.836;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:77,0,34
chr4	119625273	rs298995	G	A	2291.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=28;ExcessHet=3.9794;FS=2.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=1.05;SOR=1.163;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:359,0,360
chr4	119631629	rs4834698	T	C	308.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=1.47;SOR=1.329;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr4	119652354	rs11722833	T	C	478.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.650e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=0.622;SOR=1.329;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:14:284,0,14
chr4	119659518	rs1128403	G	A	909.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.659;SOR=0.680;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,37:59:99:918,0,513
chr4	119673704	rs12649666	T	A	62.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:71,0,73
chr4	119689549	rs11412557	C	CT	328.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250e-01;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=59.73;MQRankSum=0.00;QD=8.02;ReadPosRankSum=0.592;SOR=0.374;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:19:90:90,0,117
chr4	119718988	rs11730993	C	T	3107.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-03;DB;DP=119;ExcessHet=3.9794;FS=1.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.531;SOR=0.823;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,52:119:99:1332,0,1789
chr4	119726949	rs2303513	G	A	605.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-6.290e-01;SOR=0.593;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,5:22:99:102,0,465
chr4	119736598	rs6843524	C	T	2713.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.88;DB;DP=25;ExcessHet=3.0103;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=1.86;SOR=1.136;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:950,75,0
chr4	119736796	rs2389688	A	C	3134.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190e+00;DB;DP=127;ExcessHet=3.9794;FS=3.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.291;SOR=0.521;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,71:127:99:1624,0,1411
chr4	119737860	rs3775840	G	A	1911.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=51;ExcessHet=3.9794;FS=3.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=0.366;SOR=0.384;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,27:51:99:0|1:119737860_G_A:1099,0,1233:119737860
chr4	119737885	rs3775839	T	C	2041.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=57;ExcessHet=3.9794;FS=0.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=0.492;SOR=0.574;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,28:57:99:0|1:119737860_G_A:1084,0,1411:119737860
chr4	119944566	rs138607209	C	CT	1586.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-1.100e-02;SOR=0.715;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,23:48:99:580,0,616
chr4	119944611	rs1459058	G	T	3973.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327e+00;DB;DP=82;ExcessHet=6.9897;FS=1.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=-2.670e-01;SOR=0.791;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,44:82:99:1129,0,1055
chr4	119944900	rs74565701	A	G	332.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.138;SOR=0.793;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,105
chr4	119947961	rs70944826	AAAG	A	6094.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.707;DB;DP=154;ExcessHet=3.9794;FS=2.955;MQ=60.00;MQRankSum=0.00;QD=18.64;ReadPosRankSum=0.194;SOR=0.870;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:82,72:154:99:2764,0,3636
chr4	119950975	rs111780874	A	AT	1839.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DB;DP=31;ExcessHet=3.9794;FS=4.417;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.162;SOR=1.265;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,26:31:37:569,0,37
chr4	119951647	rs7698598	A	G	29885.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=288;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.21;SOR=1.788;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,288:288:99:9802,865,0
chr4	119952955	rs61732241	C	T	3994.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=143;ExcessHet=3.9794;FS=0.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-2.200e-01;SOR=0.718;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,63:143:99:1719,0,2236
chr4	120071926	rs6853794	T	C	1216.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.960e-01;DB;DP=14;ExcessHet=3.0103;FS=2.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.195;SOR=0.274;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:542,42,0
chr4	120072233	rs6828875	G	C	1049.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.852;DB;DP=21;ExcessHet=3.9794;FS=1.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.79;ReadPosRankSum=1.33;SOR=0.395;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,8:21:99:0|1:120072233_G_C:256,0,654:120072233
chr4	120072238	rs6828349	A	G	1015.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.220e-01;DB;DP=17;ExcessHet=3.9794;FS=1.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=1.16;SOR=0.359;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,6:17:99:0|1:120072233_G_C:219,0,590:120072233
chr4	120072275	rs6829055	G	C	617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=2.04;SOR=1.519;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:176,0,166
chr4	120079159	rs11721566	A	G	1617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.61;DB;DP=56;ExcessHet=3.9794;FS=6.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=0.197;SOR=1.313;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,20:56:99:637,0,946
chr4	120079387	rs11729978	G	A	857.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.325e+00;DB;DP=28;ExcessHet=3.9794;FS=6.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=2.11;SOR=0.179;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,20:28:99:538,0,220
chr4	120106982	rs7661020	T	C	300.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=1.24;SOR=0.693;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:92:92,0,219
chr4	120133549	rs12644283	T	G	4356.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.640e-01;DB;DP=179;ExcessHet=3.9794;FS=0.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=1.42;SOR=0.733;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,102:179:99:2505,0,1804
chr4	120133712	rs6851130	G	A	1169.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.900e-01;DB;DP=25;ExcessHet=1.5490;FS=4.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=1.33;SOR=3.145;VQSLOD=17.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,18:25:99:590,0,181
chr4	120170027	rs138336905	C	T	1149.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=83;ExcessHet=3.0103;FS=5.670;MQ=60.00;MQRankSum=0.00;QD=13.85;ReadPosRankSum=0.510;SOR=1.312;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1158,0,946
chr4	120177522	rs7668372	G	T	4876.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.018e+00;DB;DP=133;ExcessHet=6.9897;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=1.56;SOR=0.809;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,63:133:99:1614,0,1826
chr4	120177708	rs7668423	C	T	2795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=58;ExcessHet=6.9897;FS=1.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.479;SOR=0.875;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,36:58:99:939,0,553
chr4	120180790	rs6823331	T	C	508.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.25;ReadPosRankSum=-1.309e+00;SOR=1.863;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr4	120181724	rs35372126	A	G	1934.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=63;ExcessHet=3.9794;FS=0.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.186;SOR=0.624;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:687,0,836
chr4	120187611	rs11098499	C	T	986.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.42;DB;DP=31;ExcessHet=3.9794;FS=2.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.198;SOR=1.289;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:529,0,474
chr4	120189303	rs12499598	T	C	93.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=46.60;MQRankSum=0.967;QD=23.36;ReadPosRankSum=0.00;SOR=0.495;VQSLOD=-3.766e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,1:3:33:33,0,77
chr4	120189328	.	CA	C	76.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=4;ExcessHet=1.5490;FS=0.000;MQ=55.68;MQRankSum=1.38;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=0.300;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:18:30,0,18
chr4	120194470	rs11366529	CA	C	425.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=1.04;SOR=2.066;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:34:63,0,34
chr4	120194512	rs12645079	T	C	887.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.659e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=-2.220e-01;SOR=1.154;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:276,0,313
chr4	120194718	rs35610634	G	GT	14781.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.680e-01;DB;DP=194;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=26.16;ReadPosRankSum=-1.014e+00;SOR=0.469;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,191:194:99:5481,559,0
chr4	120212207	rs35703931	T	TG	270.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=1.28;SOR=0.307;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:135,0,134
chr4	120212425	rs34076547	AT	A	271.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=1.71;SOR=0.970;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:95:95,0,125
chr4	120212521	rs10006850	G	A	293.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=4.407;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	120214030	rs3749591	T	G	3836.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=136;ExcessHet=3.9794;FS=0.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.054;SOR=0.772;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,68:136:99:1762,0,1649
chr4	120220085	rs111948904	A	AAAAC	2778.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.740e-01;DB;DP=25;ExcessHet=3.0103;FS=1.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.74;ReadPosRankSum=-1.872e+00;SOR=1.095;VQSLOD=6.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1099,75,0
chr4	120220196	rs6843509	G	A	402.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=0.120;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:60:217,0,60
chr4	120221425	rs62328407	C	G	378.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=25;ExcessHet=3.9794;FS=6.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.72;ReadPosRankSum=-4.960e-01;SOR=2.044;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:232,0,499
chr4	120240131	rs2964	T	C	3509.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=70;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=0.540;SOR=0.759;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,28:70:99:640,0,952
chr4	120240238	rs1511025	T	C	2709.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=47;ExcessHet=1.5490;FS=2.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=-2.350e-01;SOR=0.477;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:555,0,655
chr4	120241674	rs10003567	C	T	270.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.79;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:81,0,36
chr4	120241725	rs11935130	C	A	105.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-5.240e-01;SOR=0.941;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:67:67,0,103
chr4	120241849	rs4834770	A	G	3566.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.02;SOR=1.721;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1039,96,0
chr4	120241902	rs1799883	T	C	5532.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=1.038;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1294,128,0
chr4	120242145	rs10006259	C	T	511.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=1.24;SOR=1.739;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:63:0|1:120242145_C_T:212,0,63:120242145
chr4	120242164	rs6823963	A	C	580.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=40.62;SOR=5.421;VQSLOD=20.43;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:120242145_C_T:135,9,0:120242145
chr4	120243035	rs714899	G	A	468.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=-6.010e-01;SOR=1.721;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:97:97,0,225
chr4	120243336	rs5861422	TA	T	11164.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=1.921;VQSLOD=4.52;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,86:86:99:3457,259,0
chr4	120243389	rs3052221	A	ACTACT	6520.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=32.75;SOR=4.514;VQSLOD=6.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1791,120,0
chr4	120243417	rs5861424	T	TTC	4075.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.86;POSITIVE_TRAIN_SITE;QD=30.78;SOR=5.376;VQSLOD=6.62;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:120243417_T_TTC:1080,72,0:120243417
chr4	120243419	rs1973598	A	T	4075.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=59.84;QD=32.09;SOR=5.259;VQSLOD=5.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:72:1|1:120243417_T_TTC:1080,72,0:120243417
chr4	120243511	rs6857641	T	C	955.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=6.273;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:307,21,0
chr4	120255728	rs71627788	C	G	175.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=11;ExcessHet=1.5490;FS=3.233;MQ=47.55;MQRankSum=-2.362e+00;QD=10.99;ReadPosRankSum=-6.600e-01;SOR=2.303;VQSLOD=-3.160e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:24:24,0,281
chr4	120259606	rs79606892	G	C	442.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=44.79;MQRankSum=-1.029e+00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=1.03;SOR=0.859;VQSLOD=-2.561e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:106,0,189
chr4	120265259	rs10028773	C	G	305.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=1.5490;FS=2.963;MQ=50.09;MQRankSum=-1.068e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.39;ReadPosRankSum=-3.660e-01;SOR=0.105;VQSLOD=-3.728e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:65:65,0,188
chr4	120265322	rs10006524	A	G	278.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=13;ExcessHet=1.5490;FS=4.036;MQ=49.73;MQRankSum=-2.537e+00;NEGATIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=0.00;SOR=0.855;VQSLOD=-2.468e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,2:13:49:49,0,280
chr4	120265438	rs4440203	A	G	695.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=59.27;QD=34.79;SOR=1.721;VQSLOD=4.00;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr4	120299148	rs9996677	G	A	1052.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.950e-01;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=52.29;MQRankSum=-4.020e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.849;SOR=0.600;VQSLOD=-1.691e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:346,0,235
chr4	120314350	rs7679230	G	C	875.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.780e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=40.87;MQRankSum=-3.285e+00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=-3.710e-01;SOR=0.540;VQSLOD=-2.733e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:323,27,0
chr4	120314664	rs13127114	T	C	3316.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=141;ExcessHet=3.9794;FS=1.457;MQ=57.79;MQRankSum=-4.670e+00;NEGATIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.143;SOR=0.590;VQSLOD=-2.279e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:77,64:141:99:1530,0,1999
chr4	120314881	rs4309825	A	G	2665.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.950e+00;DB;DP=91;ExcessHet=3.9794;FS=2.544;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.632;SOR=0.521;VQSLOD=6.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:53,38:91:99:1029,0,1570
chr4	120314921	rs4604043	C	T	2264.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=75;ExcessHet=3.9794;FS=1.176;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=0.682;SOR=0.570;VQSLOD=6.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,30:75:99:691,0,1326
chr4	120316075	rs11098513	A	G	4277.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=177;ExcessHet=3.9794;FS=5.798;MQ=57.92;MQRankSum=-2.370e-01;NEGATIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-5.700e-02;SOR=0.949;VQSLOD=-1.415e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,82:177:99:1993,0,2300
chr4	120327271	rs370990577	G	C	76.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=43.39;MQRankSum=-1.834e+00;QD=4.01;ReadPosRankSum=-4.310e-01;SOR=0.829;VQSLOD=-4.601e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:51:51,0,81
chr4	120327534	rs199749167	C	G	35.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.464;DB;DP=8;ExcessHet=3.0103;FS=3.332;MQ=54.36;MQRankSum=-2.100e+00;NEGATIVE_TRAIN_SITE;QD=4.43;ReadPosRankSum=-1.611e+00;SOR=2.303;VQSLOD=-2.763e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:43:43,0,198
chr4	120327650	rs201087782	A	G	238.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=53.50;MQRankSum=-3.440e+00;NEGATIVE_TRAIN_SITE;QD=7.22;ReadPosRankSum=-9.730e-01;SOR=0.941;VQSLOD=-3.605e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:130,0,173
chr4	120327707	rs185413498	G	T	146.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.730e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=49.48;MQRankSum=-1.946e+00;NEGATIVE_TRAIN_SITE;QD=4.87;ReadPosRankSum=1.64;SOR=0.467;VQSLOD=-3.748e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:83:83,0,227
chr4	120327890	rs181331234	T	C	147.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=8;ExcessHet=3.9794;FS=8.193;MQ=52.34;MQRankSum=-2.100e+00;NEGATIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=-6.190e-01;SOR=2.258;VQSLOD=-3.017e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:40:40,0,160
chr4	120330155	rs74693727	C	T	136.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=48.21;MQRankSum=-1.383e+00;QD=22.75;ReadPosRankSum=-1.383e+00;SOR=1.329;VQSLOD=-2.870e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr4	120330272	rs368938172	C	G	634.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=17;ExcessHet=3.9794;FS=2.987;MQ=49.39;MQRankSum=-4.101e+00;QD=14.75;ReadPosRankSum=-4.860e-01;SOR=0.278;VQSLOD=-2.853e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:224,0,230
chr4	120330379	rs201664317	T	C	1076.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050e-01;DB;DP=49;ExcessHet=3.9794;FS=7.850;MQ=54.35;MQRankSum=-3.641e+00;NEGATIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=1.58;SOR=0.455;VQSLOD=-2.238e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,17:49:99:377,0,857
chr4	120330448	rs187271184	G	A	1809.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=56.81;MQRankSum=-3.659e+00;NEGATIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=0.778;SOR=0.752;VQSLOD=-2.648e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,21:57:99:0|1:120330448_G_A:732,0,1748:120330448
chr4	120330449	rs190803766	C	A	1809.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.340e-01;DB;DP=57;ExcessHet=3.9794;FS=0.699;MQ=56.81;MQRankSum=-3.659e+00;NEGATIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.786;SOR=0.785;VQSLOD=-2.667e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,21:57:99:0|1:120330448_G_A:732,0,1748:120330448
chr4	120330539	rs140750089	G	A	1044.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DB;DP=57;ExcessHet=3.9794;FS=4.858;MQ=50.57;MQRankSum=-6.840e-01;NEGATIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=0.576;SOR=0.923;VQSLOD=-2.035e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,17:57:99:410,0,1118
chr4	120330643	rs149826784	G	A	2178.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.241e+00;DB;DP=77;ExcessHet=3.9794;FS=5.236;MQ=42.16;MQRankSum=0.391;QD=16.02;ReadPosRankSum=0.592;SOR=0.375;VQSLOD=-3.296e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,38:77:99:0|1:120330643_G_A:1432,0,2162:120330643
chr4	120330655	rs145834929	T	G	4897.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.73;DB;DP=78;ExcessHet=3.9794;FS=3.241;MQ=42.77;MQRankSum=-2.268e+00;QD=21.96;ReadPosRankSum=-4.000e-02;SOR=0.490;VQSLOD=-3.589e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,40:78:99:0|1:120330643_G_A:1475,0,2102:120330643
chr4	120382758	rs11941899	C	A	240.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.291;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=58.28;MQRankSum=-5.660e-01;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=1.01;SOR=0.836;VQSLOD=1.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:97:142,0,97
chr4	120382901	rs11098523	T	G	1161.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=49;ExcessHet=3.9794;FS=1.946;MQ=51.88;MQRankSum=-4.955e+00;NEGATIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=1.16;SOR=0.486;VQSLOD=-3.802e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,31:49:99:818,0,470
chr4	120423719	rs3733523	C	T	1254.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DB;DP=27;ExcessHet=3.9794;FS=1.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.154;SOR=0.911;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,10:27:99:0|1:120423719_C_T:369,0,842:120423719
chr4	120423729	rs3733524	T	C	1335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.750e-01;DB;DP=31;ExcessHet=3.9794;FS=1.660;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=1.23;SOR=0.876;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,14:31:99:0|1:120423719_C_T:468,0,843:120423719
chr4	120423935	rs12510138	G	C	985.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.855;SOR=0.674;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:412,0,475
chr4	120425777	rs3775841	A	C	903.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-4.960e-01;SOR=0.712;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:598,0,495
chr4	120432447	rs3775845	T	C	403.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=0.842;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=2.10;SOR=0.616;VQSLOD=2.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,2:8:65:65,0,220
chr4	120441971	rs3832309	TG	T	331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=20;ExcessHet=3.9794;FS=5.759;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.46;ReadPosRankSum=-3.970e-01;SOR=0.097;VQSLOD=6.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,7:20:99:202,0,417
chr4	120446868	rs3832310	GA	G	1282.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.180e-01;DB;DP=18;ExcessHet=3.9794;FS=6.875;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.099;SOR=0.163;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,11:18:87:277,0,87
chr4	120460306	rs1552095	T	C	617.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.304e+00;DB;DP=10;ExcessHet=3.9794;FS=2.208;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=0.298;SOR=1.528;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:159,0,175
chr4	120463471	rs1010739	C	T	233.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=0.464;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr4	120463856	rs2622497	A	C	4470.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=53;ExcessHet=3.0103;FS=6.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=0.716;SOR=0.256;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1848,159,0
chr4	120474543	rs113395950	C	CT	227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:61:0|1:120474543_C_CT:165,0,61:120474543
chr4	120474546	rs201236087	C	T	227.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.25;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:61:0|1:120474543_C_CT:165,0,61:120474543
chr4	120474859	rs11947234	A	G	2450.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=89;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=0.269;SOR=0.702;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,39:89:99:930,0,1150
chr4	120481273	rs34347414	GT	G	224.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=1.72;SOR=0.495;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,141
chr4	120481431	rs34308924	T	C	2014.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=61;ExcessHet=3.9794;FS=8.893;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.109;SOR=0.267;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,29:61:99:803,0,820
chr4	120486402	rs55825515	A	G	678.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=22;ExcessHet=3.9794;FS=6.691;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.15;ReadPosRankSum=0.239;SOR=2.262;VQSLOD=19.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:407,0,227
chr4	120488496	rs1552092	C	T	389.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=58.90;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.94;ReadPosRankSum=-5.240e-01;SOR=2.147;VQSLOD=0.458;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:68:68,0,72
chr4	120517491	rs2389869	C	T	88.34	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.75;ReadPosRankSum=0.792;SOR=0.283;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	120528327	rs3733526	G	A	6622.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.239e+00;DB;DP=70;ExcessHet=3.0103;FS=0.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.60;ReadPosRankSum=0.576;SOR=0.608;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2193,210,0
chr4	120528524	rs10536068	ATCT	A	1180.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=24;ExcessHet=3.9794;FS=2.852;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=-1.540e-01;SOR=0.342;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,11:24:99:423,0,625
chr4	120547986	rs2953293	T	G	720.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.12;ReadPosRankSum=-6.520e-01;SOR=1.270;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:24:1|1:120547986_T_G:351,24,0:120547986
chr4	120547987	rs2953294	T	A	720.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.32;ReadPosRankSum=-6.520e-01;SOR=1.358;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:120547986_T_G:351,24,0:120547986
chr4	120548074	rs3839163	A	AAAAAC	1227.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.499e+00;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.97;ReadPosRankSum=-9.900e-01;SOR=2.368;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,14:22:99:548,0,259
chr4	120549435	rs6854072	T	G	643.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.26;SOR=4.174;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr4	120549458	rs151102303	G	GCAAGTACATTTTTGTATTTGAAC	237.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.82;ReadPosRankSum=0.282;SOR=0.321;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,1:9:99:228,0,310
chr4	120550059	rs11342908	GC	G	5242.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.608;DB;DP=73;ExcessHet=3.0103;FS=2.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=0.643;SOR=0.958;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2229,220,0
chr4	120550125	rs10639733	A	AGGC	1871.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=49;ExcessHet=3.9794;FS=0.784;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=-3.400e-01;SOR=0.574;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,24:49:99:1009,0,952
chr4	120550141	rs140532689	GGCA	G	3707.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436e+00;DB;DP=51;ExcessHet=1.5490;FS=2.976;MQ=60.00;MQRankSum=0.00;QD=31.69;ReadPosRankSum=0.424;SOR=0.390;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,25:51:99:952,0,1009
chr4	120550144	rs2953291	A	*,G	2249.56	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.000e-03;DB;DP=51;ExcessHet=3.0103;FS=3.822;MQ=60.00;MQRankSum=0.00;QD=13.16;ReadPosRankSum=-7.100e-01;SOR=0.412;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,25,26:51:99:2432,1116,1009,1063,0,952
chr4	120983086	rs75370084	GA	G	826.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-5.980e-01;SOR=2.584;VQSLOD=6.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:74:74,0,74
chr4	120983259	rs2908989	T	C	6614.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.316e+00;DB;DP=92;ExcessHet=3.0103;FS=0.632;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.64;ReadPosRankSum=-6.700e-01;SOR=0.764;VQSLOD=6.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,52:92:99:1197,0,941
chr4	120983499	rs2111143	C	G	687.75	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=-1.282e+00;SOR=4.514;VQSLOD=13.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:31:107,0,31
chr4	121719759	rs3789140	T	C	426.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.414;SOR=0.484;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:89:89,0,179
chr4	121737767	rs2136998	G	A	1644.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=41;ExcessHet=6.9897;FS=5.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.030;SOR=1.339;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,12:41:99:372,0,890
chr4	121739411	rs36062004	G	GCA	94.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.57;SOR=2.833;VQSLOD=4.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:110,9,0
chr4	121774515	rs3115310	T	C	1590.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=45;ExcessHet=3.9794;FS=1.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=2.47;SOR=0.515;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:595,0,601
chr4	121774934	rs2597546	C	T	169.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=1.28;SOR=0.892;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr4	121828519	rs1901135	C	T	809.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.010e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.93;ReadPosRankSum=-5.380e-01;SOR=2.226;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:473,36,0
chr4	121957559	rs34766411	G	A	3297.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e-01;DB;DP=77;ExcessHet=6.9897;FS=4.132;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=-2.640e-01;SOR=0.492;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,35:77:99:948,0,1140
chr4	121957734	rs1397645	T	C	9263.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-1.210e+00;SOR=0.700;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,50:136:99:1213,0,2197
chr4	121958691	rs3733559	T	C	5925.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=124;ExcessHet=6.9897;FS=7.192;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-7.000e-02;SOR=1.004;VQSLOD=6.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,66:124:99:1821,0,1477
chr4	121960955	rs17353430	G	A	1305.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=45;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.13;ReadPosRankSum=1.16;SOR=0.716;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,12:45:99:289,0,832
chr4	121961031	rs3775914	A	G	2371.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.260e-01;DB;DP=85;ExcessHet=6.9897;FS=2.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.80;ReadPosRankSum=0.244;SOR=0.851;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,29:85:99:590,0,1424
chr4	121961279	rs3775915	A	T	540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.068e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=1.16;SOR=0.368;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:132,0,143
chr4	121966807	rs2276959	C	T	2776.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=48;ExcessHet=3.9794;FS=1.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=0.755;SOR=0.880;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,17:48:99:417,0,765
chr4	122053910	.	CA	C	261.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.560e-01;DP=13;ExcessHet=6.9897;FS=2.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.95;ReadPosRankSum=-7.830e-01;SOR=0.145;VQSLOD=6.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,3:13:40:40,0,222
chr4	122148787	rs2044970	A	G	1294.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=8;ExcessHet=3.9794;FS=2.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=-2.430e-01;SOR=0.324;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:54:54,0,209
chr4	122250654	rs79300690	G	A	1902.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.370;DB;DP=143;ExcessHet=3.0103;FS=2.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-6.100e-01;SOR=0.898;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,73:143:99:1911,0,1780
chr4	122255609	rs77030133	C	G	746.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=68;ExcessHet=3.0103;FS=3.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=0.136;SOR=1.235;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:755,0,1008
chr4	122255702	rs79265873	C	T	863.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.710e-01;DB;DP=80;ExcessHet=3.0103;FS=3.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=1.20;SOR=0.400;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,37:80:99:872,0,1097
chr4	122257754	rs4273490	G	C	190.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=0.405;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,76
chr4	122257942	rs4558890	A	C	8028.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.18;ReadPosRankSum=-7.640e-01;SOR=0.775;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,34:66:99:0|1:122257942_A_C:1325,0,1803:122257942
chr4	122257950	rs2302309	A	G	2710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=77;ExcessHet=3.9794;FS=0.570;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.255;SOR=0.614;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:40,37:77:99:0|1:122257942_A_C:1418,0,1973:122257942
chr4	122261495	rs2276956	C	A	491.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.093e+00;DB;DP=11;ExcessHet=3.9794;FS=4.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.00;SOR=0.148;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:216,0,132
chr4	122261596	rs12651331	A	T	784.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;DB;DP=55;ExcessHet=3.0103;FS=1.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=1.66;SOR=0.973;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,31:55:99:793,0,619
chr4	122261785	rs2276955	C	T	1165.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.780e-01;DB;DP=34;ExcessHet=3.9794;FS=0.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.511;SOR=0.551;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:538,0,356
chr4	122261930	rs55928909	T	C	256.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.34;ReadPosRankSum=0.414;SOR=1.270;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:79,0,34
chr4	122261954	rs62319023	C	T	142.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:74,0,33
chr4	122301341	rs70950816	GGAGAGAGA	G	569.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=58.74;MQRankSum=2.32;QD=16.74;ReadPosRankSum=0.945;SOR=0.368;VQSLOD=0.202;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:17:99:348,0,243
chr4	122301409	.	T	A	55.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.087e+00;DP=48;ExcessHet=3.0103;FS=10.724;MQ=60.00;MQRankSum=0.00;QD=1.15;ReadPosRankSum=-2.020e+00;SOR=3.258;VQSLOD=8.76;culprit=QD	GT:AD:DP:GQ:PL	0/1:40,8:48:64:64,0,1251
chr4	122301978	rs77822644	G	C	55.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.93;ReadPosRankSum=1.47;SOR=0.169;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:64:64,0,226
chr4	122589889	rs7686966	T	C	921.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.07;SOR=6.273;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:188,15,0
chr4	122590883	.	T	TA	369.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DP=56;ExcessHet=6.9897;FS=10.106;MQ=59.95;MQRankSum=0.00;QD=1.97;ReadPosRankSum=-2.400e-01;SOR=1.412;VQSLOD=2.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,19:56:99:292,0,669
chr4	122590913	rs41278075	G	A	540.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.968e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=1.74;SOR=0.722;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,23:51:99:549,0,863
chr4	122599249	rs3756281	G	A	239.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DB;DP=14;ExcessHet=3.0103;FS=3.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.09;ReadPosRankSum=-6.250e-01;SOR=0.105;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:248,0,197
chr4	122599447	rs13109053	G	A	992.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=0.180;SOR=1.153;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,17:21:62:595,0,62
chr4	122599755	rs3733649	T	C	93.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-1.122e+00;SOR=0.283;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:102,0,230
chr4	122607686	rs13120425	T	C	249.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=1.28;SOR=0.836;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:70:70,0,142
chr4	122617493	rs2306413	T	C	1341.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=11;ExcessHet=3.9794;FS=3.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.21;ReadPosRankSum=0.00;SOR=2.476;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:134,0,212
chr4	122681373	rs4342205	T	C	5793.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.161e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.49;ReadPosRankSum=-9.100e-02;SOR=1.104;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1649,147,0
chr4	122683007	rs4370153	G	A	7872.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=1.822;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2391,221,0
chr4	122722368	rs3828485	G	A	938.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.310e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.52;ReadPosRankSum=0.436;SOR=3.258;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:499,36,0
chr4	122723106	rs67772833	G	A	3709.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.324;DB;DP=61;ExcessHet=3.9794;FS=7.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=1.18;SOR=0.328;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2129,183,0
chr4	122732899	rs4295291	A	G	1546.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.117e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=1.48;SOR=0.985;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:333,24,0
chr4	122735225	rs141260260	C	CTTA	2094.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.904e+00;DB;DP=14;ExcessHet=3.0103;FS=2.391;MQ=59.88;MQRankSum=-6.230e-01;POSITIVE_TRAIN_SITE;QD=28.71;ReadPosRankSum=-2.240e-01;SOR=0.358;VQSLOD=1.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:630,42,0
chr4	122737278	rs3217780	T	C	123.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=-2.820e-01;SOR=0.330;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr4	122737487	rs71985276	C	CT	238.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DB;DP=7;ExcessHet=3.9794;FS=1.412;MQ=60.00;MQRankSum=0.00;QD=7.71;ReadPosRankSum=0.067;SOR=0.414;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:151,21,0
chr4	122739121	rs3217773	A	G	1351.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.291e+00;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=-3.070e-01;SOR=1.107;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:735,60,0
chr4	122739483	rs3217771	G	A	671.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e-01;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=-8.250e-01;SOR=2.833;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:495,39,0
chr4	122740162	rs2071486	C	T	992.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.20;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=1.89;SOR=1.179;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:635,54,0
chr4	122740454	rs1396080	T	G	381.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=5;ExcessHet=3.9794;FS=3.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=1.24;SOR=1.942;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:213,15,0
chr4	122741343	rs769246	A	G	72.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.31;SOR=0.693;VQSLOD=18.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	122742217	rs769242	T	C	10951.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=1.388;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3378,325,0
chr4	122749436	rs2706793	G	T	6840.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.730e-01;DB;DP=69;ExcessHet=3.0103;FS=1.735;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=-5.450e-01;SOR=0.578;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2243,207,0
chr4	122749541	rs1507994	C	T	6077.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.45;DB;DP=86;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=0.658;SOR=0.687;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2750,257,0
chr4	122750005	rs2063165	A	G	93.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=2.833;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr4	122769967	rs6824258	T	C	1260.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=1.5490;FS=2.184;MQ=60.00;POSITIVE_TRAIN_SITE;QD=14.65;SOR=1.040;VQSLOD=2.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1277,123,0
chr4	122779974	rs2661555	C	G	75.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.38;SOR=2.303;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr4	122782879	rs56159666	G	A	1347.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.76;SOR=3.145;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1364,114,0
chr4	122820601	rs377302214	TA	T	536.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.513;DB;DP=15;ExcessHet=3.9794;FS=1.662;MQ=60.00;MQRankSum=0.00;QD=12.77;ReadPosRankSum=1.18;SOR=0.316;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:240,0,145
chr4	122851985	rs71837579	TA	T,TAA	797.75	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.610e-01;DB;DP=39;ExcessHet=3.0103;FS=10.247;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.88;ReadPosRankSum=-1.388e+00;SOR=1.651;VQSLOD=3.33;culprit=FS	GT:AD:DP:GQ:PL	1/2:10,7,16:39:9:209,117,426,9,0,206
chr4	122872719	rs1396082	G	A	4259.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.244e+00;DB;DP=102;ExcessHet=1.5490;FS=0.777;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=0.493;SOR=0.591;VQSLOD=6.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3009,305,0
chr4	123091678	rs62323927	C	T	89.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=2.19;SOR=0.495;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,145
chr4	123108762	rs7670081	G	A	2408.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e-02;DB;DP=23;ExcessHet=3.0103;FS=1.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=0.139;SOR=0.482;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:896,69,0
chr4	123110956	rs7687716	A	G	436.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=-4.050e-01;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:110,0,173
chr4	123111437	rs74971057	GAT	G	96.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.63;ReadPosRankSum=-3.300e-01;SOR=0.836;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:99:105,0,309
chr4	123117729	rs62323936	T	C	659.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.408e+00;DB;DP=40;ExcessHet=3.0103;FS=5.438;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=-7.800e-01;SOR=0.203;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,27:40:99:668,0,382
chr4	123117955	rs62323937	T	C	814.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=1.14;SOR=0.703;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,27:41:99:823,0,339
chr4	123122440	rs6534344	T	C	488.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=-1.383e+00;SOR=0.770;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:150,0,174
chr4	123128669	.	CT	C	578.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=41;ExcessHet=6.9897;FS=0.000;MQ=59.68;MQRankSum=-8.980e-01;QD=4.67;ReadPosRankSum=0.114;SOR=0.655;VQSLOD=0.382;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,16:41:99:286,0,413
chr4	123128901	rs75034409	T	A	353.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.154e+00;DB;DP=28;ExcessHet=3.0103;FS=4.058;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.494;SOR=0.089;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:362,0,603
chr4	123131248	rs10023971	G	A	132.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.98;ReadPosRankSum=2.19;SOR=0.941;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:95:141,0,95
chr4	123140739	rs6534345	G	C	10742.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.735;DB;DP=111;ExcessHet=3.0103;FS=2.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=-4.020e-01;SOR=0.995;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3606,333,0
chr4	123161619	rs7657746	A	G	446.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-1.190e+00;SOR=0.330;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:141,0,147
chr4	123175900	rs66570627	G	A	742.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.480e-01;DB;DP=26;ExcessHet=6.9897;FS=7.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=0.040;SOR=2.013;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:220,0,544
chr4	123180030	rs45495097	C	T	760.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223e+00;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=-6.000e-02;SOR=1.244;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:769,0,451
chr4	123185663	rs77574900	C	A	1136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.020e-01;DB;DP=79;ExcessHet=3.0103;FS=3.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-5.020e-01;SOR=1.127;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,43:79:99:1145,0,915
chr4	123185682	rs7664976	C	A	8061.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.90;SOR=1.771;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2304,210,0
chr4	123187869	rs7683061	C	T	1313.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.996;DB;DP=32;ExcessHet=3.9794;FS=5.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=1.57;SOR=1.743;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:560,0,391
chr4	123188206	rs10644904	A	ATTTT	73.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=57.57;MQRankSum=-4.310e-01;QD=24.51;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=0.534;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:30:81,0,30
chr4	123192240	rs45608936	A	C	1411.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.750e-01;DB;DP=126;ExcessHet=3.0103;FS=2.270;MQ=60.00;MQRankSum=0.00;QD=11.20;ReadPosRankSum=-1.911e+00;SOR=0.603;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,62:126:99:1420,0,1548
chr4	123193246	rs45558836	A	G	375.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=-6.200e-02;SOR=0.223;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:384,0,332
chr4	123195682	rs62323956	A	G	644.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160e-01;DB;DP=36;ExcessHet=3.0103;FS=5.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=-1.114e+00;SOR=2.215;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:653,0,449
chr4	123210503	rs13151966	C	T	347.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=-6.740e-01;SOR=1.765;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:35:35,0,40
chr4	123246971	.	G	GT	50.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.39;ReadPosRankSum=0.992;SOR=1.022;VQSLOD=5.12;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:59:59,0,349
chr4	123257931	rs62321691	G	A	198.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=0.695;SOR=0.569;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:207,0,217
chr4	123269054	rs35587984	CA	C	229.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=10;ExcessHet=6.9897;FS=3.310;MQ=60.00;MQRankSum=0.00;QD=8.52;ReadPosRankSum=0.712;SOR=1.931;VQSLOD=5.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:10:64:85,0,64
chr4	123276961	rs62321696	G	A	418.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.336e+00;DB;DP=36;ExcessHet=3.0103;FS=6.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=1.89;SOR=0.123;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:427,0,621
chr4	123277226	rs34791626	G	GT	978.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.371e+00;DB;DP=14;ExcessHet=6.9897;FS=4.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-4.680e-01;SOR=0.213;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,11:14:70:365,0,70
chr4	123280703	rs62321698	T	C	839.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=66;ExcessHet=3.0103;FS=3.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.488;SOR=1.352;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:848,0,937
chr4	123304892	rs62321702	T	C	318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.378;DB;DP=29;ExcessHet=3.0103;FS=1.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-2.571e+00;SOR=1.352;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,12:29:99:327,0,446
chr4	123342324	rs1383044	A	G	173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.630e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=0.746;SOR=0.283;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:182,0,206
chr4	123342616	rs1383043	G	A	1125.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=23;ExcessHet=3.9794;FS=1.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.581;SOR=0.998;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:480,0,173
chr4	123533820	rs17886348	C	T	834.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=50;ExcessHet=3.0103;FS=1.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=-1.209e+00;SOR=1.038;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:843,0,446
chr4	123533834	rs17879298	G	A	825.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-2.360e-01;SOR=0.576;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:834,0,619
chr4	123536682	rs201806303	T	TA	431.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.95;ReadPosRankSum=0.319;SOR=3.500;VQSLOD=6.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:11:103,0,11
chr4	123536963	rs4833837	G	A	5568.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=1.678;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1686,165,0
chr4	123662997	rs309368	A	T	1604.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.580e-01;DB;DP=24;ExcessHet=6.9897;FS=2.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=0.293;SOR=1.038;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:307,0,415
chr4	123664204	rs309370	G	A	4686.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=58;ExcessHet=3.9794;FS=4.008;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=0.358;SOR=0.876;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,29:58:99:765,0,729
chr4	123664427	rs13135766	G	C	3309.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.546;DB;DP=83;ExcessHet=6.9897;FS=0.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-3.370e-01;SOR=0.642;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,48:83:99:1251,0,966
chr4	123664446	rs13135778	G	A	3174.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e-01;DB;DP=73;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.089;SOR=0.700;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,41:73:99:1149,0,851
chr4	123664457	rs13135445	C	T	3184.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-02;DB;DP=71;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.186;SOR=0.712;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,40:71:99:1093,0,804
chr4	123664919	rs13102440	A	G	2199.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=44;ExcessHet=6.9897;FS=1.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.098;SOR=0.826;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,30:44:99:760,0,391
chr4	123665366	rs35804517	T	TA	115.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,63
chr4	123748086	rs1449683	C	T	293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=27;ExcessHet=3.0103;FS=3.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-2.060e-01;SOR=0.548;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,9:27:99:0|1:123748072_C_A:302,0,498:123748072
chr4	123748616	rs2922979	C	G	1915.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=49;ExcessHet=1.5490;FS=3.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.670;SOR=0.340;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:641,0,708
chr4	123833516	rs11098677	G	T	365.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.345e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=0.135;SOR=1.473;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	123838758	rs12648093	A	G	7004.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.525e+00;DB;DP=112;ExcessHet=3.9794;FS=1.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=1.43;SOR=0.590;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,54:112:99:1342,0,1550
chr4	123843236	rs72674962	G	A	630.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=-4.790e-01;SOR=0.941;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:639,0,342
chr4	123843716	rs13134412	T	C	9286.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273e+00;DB;DP=156;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-6.150e-01;SOR=0.734;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,76:156:99:2093,0,2111
chr4	123854495	rs1563706	T	C	1532.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e-01;DB;DP=13;ExcessHet=3.9794;FS=3.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=0.743;SOR=1.406;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:120,0,297
chr4	123868279	rs11098682	G	T	488.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=1.96;SOR=1.609;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,118
chr4	123949556	rs1472949	G	A	6250.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=32.56;SOR=1.420;VQSLOD=5.36;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1596,144,0
chr4	124177079	rs58576761	C	T	443.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=24;ExcessHet=3.0103;FS=7.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=1.22;SOR=2.925;VQSLOD=17.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:452,0,304
chr4	124235293	rs72682748	T	C	220.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:90:229,0,90
chr4	124322633	rs300573	C	A	92.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.967;SOR=0.693;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:59,0,32
chr4	124323738	rs300574	T	C	1243.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=1.29;SOR=0.624;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,18:29:99:491,0,345
chr4	126237971	rs72928772	C	T	3492.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920e+00;DB;DP=285;ExcessHet=3.0103;FS=10.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.917;SOR=1.205;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:155,130:285:99:3501,0,4572
chr4	126238924	rs6847454	A	T	8753.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;DB;DP=320;ExcessHet=3.9794;FS=3.182;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=1.57;SOR=0.597;VQSLOD=6.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:150,170:320:99:4408,0,3604
chr4	126239986	rs1039808	C	T	3208.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=102;ExcessHet=3.9794;FS=0.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=0.082;SOR=0.774;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,38:102:99:845,0,1705
chr4	126240510	rs2940779	T	C	5150.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.716;DB;DP=76;ExcessHet=3.9794;FS=1.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=0.343;SOR=0.585;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,44:76:99:1194,0,750
chr4	126241871	rs2710555	C	T	7211.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=129;ExcessHet=3.9794;FS=11.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.49;ReadPosRankSum=0.398;SOR=0.502;VQSLOD=18.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,58:129:99:1427,0,1803
chr4	126315034	rs925243	T	C	5915.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=1.402;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1829,186,0
chr4	126315282	rs925242	A	G	1646.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=5.283;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:498,42,0
chr4	126319751	rs1509295	G	A	225.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=3.912;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:155,12,0
chr4	126328453	rs4508902	G	A	917.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.27;SOR=6.358;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr4	126329526	rs10518464	C	G	360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=1.32;SOR=0.223;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:133,0,380
chr4	126329789	rs958415	T	C	10688.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=0.935;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2624,266,0
chr4	126335978	rs4605670	G	C	5451.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.08;SOR=1.913;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1141,133,0
chr4	126336990	rs10010000	G	T	3548.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=4.247;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:616,51,0
chr4	126337555	rs7675556	A	G	2107.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=5.136;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:441,36,0
chr4	126355609	rs7656135	T	G	4745.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.58;SOR=4.085;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1612,129,0
chr4	126355735	rs7678076	A	G	481.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.08;SOR=5.136;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	126369461	rs4834041	C	T	798.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.12;SOR=5.994;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr4	126369872	rs988863	G	C	13397.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=30.07;SOR=0.791;VQSLOD=4.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3704,327,0
chr4	126373789	rs12650153	G	A	6328.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=32.13;SOR=0.810;VQSLOD=4.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1622,165,0
chr4	126384595	rs4146009	C	T	919.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=0.853;SOR=1.085;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:132,0,209
chr4	126384905	rs10010645	A	C	1129.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.86;ReadPosRankSum=1.00;SOR=0.943;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:376,0,501
chr4	126389627	rs6814158	A	G	4568.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=2.784;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1020,96,0
chr4	126390010	rs35304021	A	G	892.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.348;SOR=0.949;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:295,0,209
chr4	126390022	rs34927272	A	G	692.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.74;ReadPosRankSum=0.832;SOR=0.446;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:256,0,201
chr4	126397056	rs67399037	C	T	604.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=2.07;SOR=0.818;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:211,0,136
chr4	126397321	rs17009761	C	T	6414.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=120;ExcessHet=6.9897;FS=2.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=-2.020e-01;SOR=0.537;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,64:120:99:1545,0,1285
chr4	126400825	rs1506361	G	T	2290.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.827e+00;DB;DP=24;ExcessHet=3.0103;FS=3.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=0.158;SOR=0.298;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:816,72,0
chr4	126402574	rs10026056	C	T	605.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DB;DP=14;ExcessHet=6.9897;FS=2.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=0.196;SOR=0.204;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:210,0,209
chr4	126402921	rs11098815	T	G	1152.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.162e+00;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=0.706;SOR=0.634;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:472,0,697
chr4	126408586	rs17009825	C	T	884.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DB;DP=101;ExcessHet=3.0103;FS=2.725;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=0.195;SOR=1.036;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,39:101:99:893,0,1574
chr4	126411002	.	C	CTTTTTT	1091.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.090e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=58.51;MQRankSum=-5.850e-01;QD=34.23;ReadPosRankSum=-1.299e+00;SOR=0.416;VQSLOD=-1.082e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:30:420,30,0
chr4	126412106	rs147662558	C	G	1771.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DB;DP=111;ExcessHet=3.0103;FS=1.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=1.71;SOR=0.553;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,62:111:99:1780,0,1253
chr4	126412154	rs72675395	G	A	1191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.512;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=-1.365e+00;SOR=0.773;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,42:97:99:1200,0,1563
chr4	126412575	rs1014866	A	G	11334.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=112;ExcessHet=3.0103;FS=1.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.99;ReadPosRankSum=0.283;SOR=0.605;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3794,336,0
chr4	128544514	rs12650360	C	G	3096.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.376e+00;DB;DP=59;ExcessHet=1.5490;FS=6.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=0.205;SOR=0.295;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,31:59:99:685,0,844
chr4	128544696	rs4834207	A	G	14909.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.14;DB;DP=210;ExcessHet=3.0103;FS=1.592;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=0.871;SOR=0.577;VQSLOD=6.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,210:210:99:6272,630,0
chr4	128554404	rs2255457	G	A	3476.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.736;DB;DP=39;ExcessHet=3.9794;FS=2.375;MQ=59.96;MQRankSum=0.802;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=1.05;SOR=0.980;VQSLOD=2.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,14:39:99:350,0,675
chr4	128565000	rs3749507	A	G	5270.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=82;ExcessHet=3.9794;FS=1.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.67;ReadPosRankSum=-6.880e-01;SOR=0.844;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,38:82:99:964,0,1021
chr4	128584580	rs4833380	G	A	3131.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.18;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.86;ReadPosRankSum=0.805;SOR=0.635;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:541,0,344
chr4	128621272	rs12331481	A	C	2651.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.682;DB;DP=41;ExcessHet=6.9897;FS=2.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=0.543;SOR=0.527;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,32:41:99:890,0,148
chr4	128627050	rs7683627	C	T	340.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.72;ReadPosRankSum=0.213;SOR=0.241;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:163,0,256
chr4	128632023	rs2305956	A	G	2112.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.11;DB;DP=54;ExcessHet=3.9794;FS=0.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=1.52;SOR=0.943;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:807,0,638
chr4	128632445	rs4834211	C	T	308.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=1.38;SOR=1.445;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr4	128635022	rs34240473	C	T	641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=17;ExcessHet=3.9794;FS=2.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.906;SOR=0.269;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:188,0,352
chr4	128665981	rs769293	T	C	1815.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.387;SOR=0.604;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:439,0,493
chr4	128688444	rs3214038	C	T	416.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654e+00;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=1.24;SOR=0.910;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:425,0,572
chr4	128689936	rs2305958	A	G	2625.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DB;DP=109;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=0.507;SOR=0.691;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,54:109:99:1248,0,1264
chr4	128704525	rs36047187	G	C	53.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.61;ReadPosRankSum=-1.465e+00;SOR=0.223;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,195
chr4	128723042	rs1380154	T	C	2383.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-02;DB;DP=69;ExcessHet=6.9897;FS=2.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.77;ReadPosRankSum=0.700;SOR=0.567;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,39:69:99:913,0,754
chr4	128732926	rs2305957	A	G	296.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.74;ReadPosRankSum=1.72;SOR=1.112;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:125,0,139
chr4	128803159	rs3811741	G	A	2276.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.17;DB;DP=28;ExcessHet=3.9794;FS=2.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.22;ReadPosRankSum=0.680;SOR=1.143;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,19:28:99:552,0,205
chr4	128807219	rs3811740	T	A	4997.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;DB;DP=101;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=0.582;SOR=0.681;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,65:101:99:1789,0,936
chr4	128812006	.	G	T	31.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.57;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:40,0,34
chr4	128814964	rs17012739	G	T	5291.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.783e+00;DB;DP=136;ExcessHet=6.9897;FS=3.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.870;SOR=0.486;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,72:136:99:1753,0,1633
chr4	128816052	rs41278097	A	G	532.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=57;ExcessHet=3.0103;FS=2.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.34;ReadPosRankSum=-2.930e-01;SOR=1.189;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,20:57:99:541,0,929
chr4	128923001	rs35200534	GT	G	724.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120e-01;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.68;ReadPosRankSum=-7.960e-01;SOR=0.841;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,13:21:99:299,0,160
chr4	128930828	.	G	A	142.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DP=29;ExcessHet=3.0103;FS=1.697;MQ=60.00;MQRankSum=0.00;QD=4.91;ReadPosRankSum=1.30;SOR=1.112;VQSLOD=20.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,7:29:99:151,0,542
chr4	128995989	rs6534661	A	G	1313.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.44;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.09;ReadPosRankSum=-3.200e-02;SOR=0.593;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,19:40:99:532,0,690
chr4	129012181	rs2306054	G	A	2095.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840e-01;DB;DP=73;ExcessHet=3.9794;FS=1.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.428;SOR=0.638;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:1043,0,915
chr4	129012638	rs1064205	A	G	1400.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DB;DP=60;ExcessHet=3.9794;FS=1.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=0.749;SOR=0.864;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,20:60:99:475,0,1033
chr4	129012754	rs369786648	AT	A	64.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=16;ExcessHet=3.9794;FS=2.474;MQ=60.00;MQRankSum=0.00;QD=1.78;ReadPosRankSum=1.28;SOR=1.214;VQSLOD=4.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,3:16:31:31,0,246
chr4	129019691	rs4833396	G	A	536.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.47;SOR=4.047;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr4	129028679	rs11098950	T	C	476.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.275e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-6.040e-01;SOR=0.343;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:188,0,253
chr4	129029009	rs34678812	G	GA	2368.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=81;ExcessHet=3.9794;FS=2.757;MQ=60.00;MQRankSum=0.00;QD=13.46;ReadPosRankSum=0.124;SOR=0.922;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,39:81:99:960,0,1065
chr4	129035514	rs2306055	C	G	1362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=58;ExcessHet=3.9794;FS=0.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-1.536e+00;SOR=0.610;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:907,0,519
chr4	129043204	rs12508837	C	G	1007.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.980e-01;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=-3.100e-01;SOR=0.699;VQSLOD=6.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:481,0,576
chr4	129043286	rs3733320	C	T	1988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=95;ExcessHet=3.9794;FS=1.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=1.82;SOR=0.791;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,37:95:99:887,0,1431
chr4	129043601	rs3832282	T	TG	1948.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=59.67;MQRankSum=1.23;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=0.669;SOR=0.628;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,22:40:99:0|1:129043601_T_TG:866,0,926:129043601
chr4	129043614	rs3733321	G	T	2345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=59.71;MQRankSum=1.31;QD=23.93;ReadPosRankSum=0.052;SOR=0.615;VQSLOD=-4.146e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,25:43:99:0|1:129043601_T_TG:974,0,917:129043601
chr4	129043617	rs3733322	T	G	2345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.817;DB;DP=43;ExcessHet=3.9794;FS=1.675;MQ=59.71;MQRankSum=1.28;QD=23.69;ReadPosRankSum=0.344;SOR=0.523;VQSLOD=-5.953e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,25:43:99:0|1:129043601_T_TG:974,0,917:129043601
chr4	129043809	rs12509092	G	A	563.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.457e+00;DB;DP=24;ExcessHet=3.9794;FS=1.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=0.485;SOR=0.300;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:356,0,321
chr4	129100643	rs12645577	G	A	2623.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=90;ExcessHet=3.9794;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=-5.600e-01;SOR=0.593;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,52:90:99:1302,0,844
chr4	129130877	rs6534671	A	G	110.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.74;SOR=3.258;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:3:61,3,0
chr4	129193739	.	TAA	T	69.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.32;ReadPosRankSum=1.31;SOR=0.340;VQSLOD=6.71;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,2:7:45:45,0,134
chr4	129776983	rs76983300	C	CT	2623.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.080e-01;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.21;ReadPosRankSum=-1.288e+00;SOR=3.679;VQSLOD=4.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,30:31:63:840,63,0
chr4	129867280	rs10028124	T	A	2086.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.100e-02;DB;DP=65;ExcessHet=3.9794;FS=3.020;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=0.130;SOR=0.958;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,26:65:99:618,0,993
chr4	129869490	.	CAAA	CAA,C	288.89	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.800e-01;DP=10;ExcessHet=3.9794;FS=5.576;MQ=59.12;MQRankSum=0.00;QD=10.32;ReadPosRankSum=0.272;SOR=0.102;VQSLOD=4.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,3,4:10:12:161,81,99,12,0,133
chr4	129873281	rs4975289	C	T	231.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=0.231;SOR=0.693;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:105,0,63
chr4	129873433	rs10857134	A	G	3264.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.02;DB;DP=87;ExcessHet=3.9794;FS=2.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.745;SOR=0.977;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1288,0,1218
chr4	129873636	rs72683673	A	G	3673.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.47;DB;DP=131;ExcessHet=3.9794;FS=1.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=0.471;SOR=0.833;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,61:131:99:1585,0,1779
chr4	129924852	rs3099900	T	C	2626.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.070e-01;DB;DP=31;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.25;ReadPosRankSum=0.138;SOR=0.709;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:370,0,477
chr4	129924977	rs3113487	C	A	10572.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=0.734;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2698,281,0
chr4	129961053	rs144070383	GCGCACA	G	247.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.49;ReadPosRankSum=1.42;SOR=0.693;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:131,0,131
chr4	129961055	rs201484585	GCACA	*,G	409.39	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=21.55;SOR=4.514;VQSLOD=3.98;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,3:7:99:381,122,131,154,0,131
chr4	129961179	rs3113489	A	G	4282.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.20;SOR=1.485;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1272,117,0
chr4	129965026	rs1450727	T	C	1153.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=1.29;SOR=2.494;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:95:183,0,95
chr4	130003237	rs1699388	T	C	415.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.04;SOR=4.977;VQSLOD=19.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr4	130023759	rs1757935	A	T	8059.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=31.86;SOR=1.816;VQSLOD=4.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2344,234,0
chr4	130030652	rs337277	A	G	8151.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=0.810;VQSLOD=19.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2838,261,0
chr4	130030944	rs337276	C	A	1238.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=5.670;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:498,39,0
chr4	133367588	rs1827132	T	C	2544.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.94;SOR=0.765;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1027,108,0
chr4	133367655	rs1827133	G	A	1513.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.379;DB;DP=25;ExcessHet=3.9794;FS=3.919;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=1.70;SOR=0.316;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:799,75,0
chr4	133368361	rs70948202	T	TC	2605.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.749e+00;DB;DP=25;ExcessHet=3.0103;FS=1.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.02;ReadPosRankSum=0.250;SOR=0.502;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1008,75,0
chr4	134072264	rs13144059	G	A	3950.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.104e+00;DB;DP=345;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.349;SOR=0.674;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:186,159:345:99:3959,0,4968
chr4	134074058	rs3749589	A	G	1678.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.268e+00;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=59.90;MQRankSum=-6.150e-01;POSITIVE_TRAIN_SITE;QD=28.46;ReadPosRankSum=0.693;SOR=0.446;VQSLOD=2.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:874,72,0
chr4	134075341	rs71616771	T	G	116.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.704e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.707;SOR=0.412;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:125,0,226
chr4	134075932	rs72715783	A	G	315.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=-1.900e-01;SOR=1.460;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:324,0,370
chr4	134076153	rs2271171	T	C	1643.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.419e+00;DB;DP=115;ExcessHet=3.0103;FS=3.588;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=0.271;SOR=0.406;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,69:115:99:1652,0,1100
chr4	134083809	rs10084852	C	T	538.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.69;SOR=5.283;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr4	134084265	rs151224823	C	G	1482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.447;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.00;ReadPosRankSum=0.689;SOR=0.713;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,52:114:99:1491,0,1656
chr4	134084958	rs2420154	G	A	623.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=0.078;SOR=1.802;VQSLOD=5.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:466,36,0
chr4	134085307	rs34777205	C	A	600.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.554e+00;DB;DP=38;ExcessHet=3.0103;FS=5.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=1.18;SOR=0.164;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,26:38:99:609,0,303
chr4	135120864	rs72714363	G	A	413.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=1.19;SOR=0.420;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:57:57,0,117
chr4	138449510	rs58884168	T	A	251.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=-2.820e-01;SOR=0.818;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:260,0,230
chr4	138449683	rs10018837	A	G	3888.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.813;DB;DP=86;ExcessHet=6.9897;FS=4.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=0.310;SOR=0.498;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,49:86:99:1233,0,970
chr4	138449812	rs10006580	C	G	3230.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.332;DB;DP=63;ExcessHet=6.9897;FS=0.959;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.288;SOR=0.766;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,23:63:99:613,0,1179
chr4	138450124	rs62330469	G	A	67.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=1.28;SOR=0.223;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:76,0,65
chr4	138453453	rs28566714	G	A	963.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.136e+00;DB;DP=96;ExcessHet=3.0103;FS=0.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=-5.220e-01;SOR=0.813;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,41:96:99:972,0,1470
chr4	139093228	rs4504306	T	C	1879.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=6.138;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:600,42,0
chr4	139100372	rs4479754	C	T	2420.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;DB;DP=24;ExcessHet=3.0103;FS=4.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=-2.856e+00;SOR=1.888;VQSLOD=21.70;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:870,72,0
chr4	139103366	rs10016559	A	G	969.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.72;SOR=2.670;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:225,18,0
chr4	139135799	rs11944083	T	C	280.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=0.551;SOR=0.582;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:45:289,0,45
chr4	139140388	rs10025342	G	A	7517.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=0.832;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1695,176,0
chr4	139482854	rs7695907	C	A	4708.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.124;DB;DP=121;ExcessHet=6.9897;FS=8.032;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-3.620e-01;SOR=1.074;VQSLOD=6.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,73:121:99:1827,0,1270
chr4	139937071	rs3749515	C	T	357.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=1.28;SOR=1.329;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:25:74,0,25
chr4	139966663	.	ATT	A	662.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.200;DP=9;ExcessHet=6.9897;FS=0.000;MQ=59.59;MQRankSum=-3.090e-01;QD=21.36;ReadPosRankSum=0.414;SOR=0.748;VQSLOD=0.741;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:9:57:57,0,92
chr4	140005294	rs4863628	A	G	34517.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=361;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=0.731;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,361:361:99:10883,1082,0
chr4	140036422	rs7661947	T	C	2999.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.276;DB;DP=55;ExcessHet=3.0103;FS=2.799;MQ=57.32;MQRankSum=-3.084e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=2.00;SOR=1.091;VQSLOD=-1.507e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:545,0,619
chr4	140036628	rs62320535	A	G	39.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=19.59;SOR=0.693;VQSLOD=13.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	140039107	rs60424237	C	CA	2661.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.180;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.15;ReadPosRankSum=-1.117e+00;SOR=0.898;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:4,37:45:44:913,44,0
chr4	140058849	rs62623564	A	T	1655.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e-01;DB;DP=94;ExcessHet=3.0103;FS=2.929;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=-1.456e+00;SOR=0.411;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,63:94:99:1664,0,696
chr4	140187612	rs116191353	T	G	247.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.534;SOR=0.495;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:256,0,279
chr4	140216494	rs140470470	C	T	47.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.25;ReadPosRankSum=-5.490e-01;SOR=0.551;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:56:56,0,265
chr4	140263849	rs11944434	G	A	1281.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.73;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.27;ReadPosRankSum=-7.590e-01;SOR=0.760;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:335,27,0
chr4	140270875	rs2044810	G	A	900.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=6.273;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr4	140281941	rs2060685	G	A	328.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=1.65;SOR=1.981;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr4	140308984	rs998310	C	A	1834.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.621e+00;DB;DP=31;ExcessHet=1.5490;FS=1.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=-1.503e+00;SOR=0.454;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:420,0,459
chr4	140375296	rs13128486	C	G	1078.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=29;ExcessHet=3.9794;FS=1.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.67;ReadPosRankSum=2.03;SOR=0.883;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:418,0,346
chr4	140417471	rs4863655	G	T	2545.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.725e+00;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=0.547;SOR=0.661;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1282,114,0
chr4	140417671	rs4863656	G	C	5748.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.173e+00;DB;DP=79;ExcessHet=3.0103;FS=0.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=0.594;SOR=0.824;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2329,237,0
chr4	140417885	.	GT	G	66.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=13.27;ReadPosRankSum=0.524;SOR=0.061;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:140417885_GT_G:75,0,219:140417885
chr4	140417887	.	T	A	66.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=13.27;ReadPosRankSum=0.524;SOR=0.061;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:140417885_GT_G:75,0,219:140417885
chr4	140444735	.	A	G	289.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.30;ReadPosRankSum=0.381;SOR=1.802;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:84:298,0,84
chr4	140450455	rs2592973	G	C	835.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.43;ReadPosRankSum=1.07;SOR=2.584;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:435,30,0
chr4	140454711	rs2592972	C	T	880.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.36;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.46;ReadPosRankSum=2.84;SOR=1.209;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:366,27,0
chr4	140625323	rs925424	A	G	10357.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=0.991;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3150,298,0
chr4	140651584	rs3051167	TCTG	T	21665.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=28.79;SOR=1.048;VQSLOD=5.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,161:163:99:7203,486,0
chr4	140809656	rs6839194	C	A	2340.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.732;DB;DP=62;ExcessHet=6.9897;FS=4.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-5.090e-01;SOR=0.984;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,22:62:99:556,0,1125
chr4	140809710	rs3775241	C	G	3316.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390e-01;DB;DP=73;ExcessHet=6.9897;FS=2.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-4.100e-01;SOR=0.845;VQSLOD=6.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,30:73:99:702,0,1218
chr4	140810334	rs3733381	T	C	4517.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DB;DP=58;ExcessHet=3.9794;FS=1.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=-3.350e-01;SOR=0.561;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2043,174,0
chr4	140810637	rs11100342	C	T	2478.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DB;DP=69;ExcessHet=6.9897;FS=6.065;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-1.660e-01;SOR=1.085;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:793,0,1076
chr4	140810700	rs11729794	C	T	3460.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.161;DB;DP=65;ExcessHet=1.5490;FS=0.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=-1.617e+00;SOR=0.569;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2369,195,0
chr4	140811083	rs373804063	GC	G	11744.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.940e-01;DB;DP=99;ExcessHet=3.0103;FS=4.157;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.34;ReadPosRankSum=-9.650e-01;SOR=0.453;VQSLOD=6.40;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,99:99:99:1|1:140811083_GC_G:4254,296,0:140811083
chr4	140811085	rs58287721	TGCTGCTGCTGC	T	11986.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.210e+00;DB;DP=99;ExcessHet=3.0103;FS=3.852;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=-9.910e-01;SOR=0.490;VQSLOD=6.49;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,99:99:99:1|1:140811083_GC_G:4367,305,0:140811083
chr4	140811135	rs3733382	T	C	9751.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.87;DB;DP=130;ExcessHet=3.9794;FS=1.145;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=-1.620e-01;SOR=0.801;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,129:130:99:1|1:140811083_GC_G:5037,356,0:140811083
chr4	141073959	rs10002356	A	C	206.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=2.609;MQ=60.00;MQRankSum=0.00;QD=8.24;ReadPosRankSum=-1.210e-01;SOR=0.117;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:95:95,0,163
chr4	141290281	rs4956386	C	G	1032.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.11;SOR=6.439;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:250,18,0
chr4	141290574	rs2668577	C	T	5249.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.753e+00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=0.00;SOR=0.602;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,41:42:81:1327,81,0
chr4	141290760	rs2668578	A	C	851.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.09;SOR=6.091;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr4	141311960	rs358329	T	C	3988.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=6.148;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:945,78,0
chr4	141314056	rs6818835	G	C	679.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=5.670;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr4	141321425	rs2252427	A	G	2410.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=3.643;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:716,66,0
chr4	141364333	rs6835100	G	A	533.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.42;SOR=5.421;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr4	141372485	rs6536966	T	C	1016.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.09;SOR=5.058;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:205,15,0
chr4	141383034	rs199971169	T	TAC	2712	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.500e-01;DB;DP=23;ExcessHet=3.0103;FS=3.813;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.47;ReadPosRankSum=1.91;SOR=0.185;VQSLOD=6.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,21:23:14:563,14,0
chr4	141458485	rs882930	T	G	829.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=-1.265e+00;SOR=3.352;VQSLOD=18.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:440,33,0
chr4	141484765	rs201917162	A	AT	32.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.94;ReadPosRankSum=-7.780e-01;SOR=0.180;VQSLOD=5.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:11:41:41,0,174
chr4	141489262	rs67042590	CGTGT	C	433.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.26;ReadPosRankSum=-3.660e-01;SOR=3.912;VQSLOD=4.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:7:31:128,0,31
chr4	141489987	rs1800661	C	T	3626.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=54;ExcessHet=1.5490;FS=3.370;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.90;ReadPosRankSum=-1.550e+00;SOR=0.262;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:716,0,831
chr4	141590135	rs61742550	C	T	872.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=70;ExcessHet=3.0103;FS=2.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=1.03;SOR=1.091;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,35:70:99:881,0,872
chr4	141623003	rs3832304	CA	C	106.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.13;SOR=1.179;VQSLOD=5.43;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	141677006	rs70943501	A	AG	13447.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.31;SOR=3.500;VQSLOD=5.09;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,117:117:99:4178,355,0
chr4	141701792	rs62346573	G	T	807.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=51.49;NEGATIVE_TRAIN_SITE;QD=30.97;SOR=3.442;VQSLOD=0.482;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:10,3,0
chr4	141771715	rs374724826	GGT	G	165.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.829;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.93;ReadPosRankSum=0.620;SOR=0.639;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,2:22:32:32,0,515
chr4	141832180	rs17338203	A	G	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=20;ExcessHet=3.0103;FS=13.087;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=-8.110e-01;SOR=4.332;VQSLOD=12.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:465,0,193
chr4	141846797	rs10004146	G	T	54.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,75
chr4	141847077	rs13138724	G	A	2320.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.014e+00;DB;DP=93;ExcessHet=3.9794;FS=5.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.74;ReadPosRankSum=-4.670e-01;SOR=0.476;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,42:93:99:1002,0,1421
chr4	141847110	rs13120735	T	C	2395.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.990e-01;DB;DP=109;ExcessHet=3.9794;FS=2.977;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.50;ReadPosRankSum=-6.140e-01;SOR=0.672;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,48:109:99:1113,0,1531
chr4	141847279	rs12503723	G	A	1045.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270e-01;DB;DP=46;ExcessHet=3.9794;FS=3.152;MQ=59.89;MQRankSum=0.982;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=3.18;SOR=0.370;VQSLOD=1.73;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:27,19:46:99:429,0,753
chr4	141868736	rs2321687	G	T	2597.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=20;ExcessHet=3.0103;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.47;ReadPosRankSum=0.464;SOR=1.346;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:345,0,192
chr4	141869062	rs6857782	C	T	2189.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.403;DB;DP=22;ExcessHet=3.0103;FS=6.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.28;ReadPosRankSum=-2.300e-01;SOR=2.509;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:367,0,329
chr4	141870277	rs4956493	C	T	715.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.83;ReadPosRankSum=0.901;SOR=1.609;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:288,0,121
chr4	141870648	rs4956494	G	A	2149.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218e+00;DB;DP=35;ExcessHet=1.5490;FS=4.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=-3.550e-01;SOR=0.258;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:672,0,278
chr4	141924668	rs62326020	T	C	101.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.32;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:110,0,28
chr4	141924720	rs200083054	TAC	T	817.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.36;ReadPosRankSum=1.50;SOR=0.673;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:14:86:185,0,86
chr4	141940074	rs4245936	T	C	3526.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.52;SOR=0.905;VQSLOD=19.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1074,123,0
chr4	141983402	rs12506655	C	T	555.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.224e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=0.393;SOR=2.200;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr4	142187440	rs59096816	TATATGAATATATATGTATACACAC	T	159.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.96;SOR=1.981;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	142640462	rs1493013	C	T	4555.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e+00;DB;DP=36;ExcessHet=3.0103;FS=1.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=0.095;SOR=0.545;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:740,0,711
chr4	142640463	rs1493012	C	T	5245.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.312;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.15;ReadPosRankSum=0.643;SOR=0.691;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,19:38:99:846,0,702
chr4	142640538	rs2254514	T	C	8833.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=0.893;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2641,263,0
chr4	142640637	rs2857261	A	G	5361.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.970e-01;DB;DP=55;ExcessHet=3.0103;FS=3.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.98;ReadPosRankSum=-2.418e+00;SOR=0.361;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,36:55:99:1036,0,555
chr4	142650901	rs7349640	A	G	149.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=0.992;SOR=0.330;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:85:158,0,85
chr4	142651159	rs12510030	T	C	6282.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DB;DP=68;ExcessHet=3.0103;FS=0.654;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.35;SOR=0.812;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,29:68:99:682,0,1004
chr4	142651265	rs17007610	T	C	2396.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=33;ExcessHet=3.0103;FS=11.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=0.890;SOR=1.971;VQSLOD=16.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,9:33:99:205,0,621
chr4	143003015	rs1353603	T	C	264.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=4.174;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr4	143003155	rs11446749	G	GA	4058.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=2.506;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1042,105,0
chr4	143003526	rs2667118	A	G	545.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.47;SOR=5.283;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:295,21,0
chr4	143007197	rs336325	C	T	4803.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=2.078;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1700,170,0
chr4	143007419	rs336324	A	G	4049.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.530e-01;DB;DP=44;ExcessHet=3.0103;FS=1.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=-8.100e-02;SOR=0.598;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1381,132,0
chr4	143007460	rs336323	T	G	2339.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.07;DB;DP=19;ExcessHet=3.0103;FS=16.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.43;ReadPosRankSum=1.61;SOR=4.315;VQSLOD=10.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:763,57,0
chr4	143044666	rs2645786	A	C	2716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=8.287;VQSLOD=24.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:697,48,0
chr4	143114040	rs1497144	A	C	450.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=4.977;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr4	143114548	rs992257	A	G	1067.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.45;ReadPosRankSum=0.00;SOR=1.432;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:143114548_A_G:450,30,0:143114548
chr4	143114556	rs2636662	A	G	1372.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.80;SOR=6.869;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:143114548_A_G:450,30,0:143114548
chr4	143114558	rs2636663	G	A	1372.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.82;SOR=6.932;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:143114548_A_G:450,30,0:143114548
chr4	143114598	rs2636664	G	C	729.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=5.784;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr4	143130034	rs1907123	A	T	9656.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=1.408;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2795,275,0
chr4	143130219	rs1994217	T	A	2525.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.010e-01;DB;DP=24;ExcessHet=3.0103;FS=3.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.18;ReadPosRankSum=0.066;SOR=2.174;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:905,72,0
chr4	143181484	rs2636642	G	A	1500.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.67;SOR=4.977;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr4	143181747	rs66750380	AT	A	597.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.237;DB;DP=34;ExcessHet=6.9897;FS=1.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.07;ReadPosRankSum=0.508;SOR=0.893;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,14:34:99:226,0,322
chr4	143181748	rs1907111	T	*,A	1664.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=13.53;SOR=1.708;VQSLOD=11.36;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,14,20:34:99:969,397,322,323,0,226
chr4	143192178	rs3102444	G	A	573.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.80;SOR=2.448;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	143226768	rs2627808	G	T	6578.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=1.709;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1906,171,0
chr4	143226784	rs2636640	G	A	5772.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.36;SOR=1.513;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1647,144,0
chr4	143236139	rs960679	T	C	1012.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=6.439;VQSLOD=23.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:257,18,0
chr4	143268348	rs882005	G	A	73.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.38;SOR=2.303;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	143268528	rs882004	T	A	2041.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.840e+00;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=-2.373e+00;SOR=0.852;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1092,90,0
chr4	143304996	rs12511267	T	A	159.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.85;ReadPosRankSum=-5.160e-01;SOR=0.859;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,6:18:99:0|1:143304996_T_A:168,0,466:143304996
chr4	143305002	rs11930321	G	T	1156.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.090e-01;DB;DP=19;ExcessHet=3.9794;FS=2.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=0.719;SOR=1.954;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,12:19:99:1|0:143304996_T_A:395,0,255:143304996
chr4	143305189	rs11944462	A	T	5532.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=123;ExcessHet=3.9794;FS=0.414;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=-6.210e-01;SOR=0.684;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,47:123:99:1141,0,1826
chr4	143305343	rs11944503	A	G	2116.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.032e+00;DB;DP=24;ExcessHet=3.9794;FS=7.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=-3.200e-01;SOR=0.139;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:378,0,378
chr4	143324036	rs1982965	T	C	798.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.780e-01;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=2.28;SOR=0.458;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:367,0,416
chr4	143324094	rs1982966	G	A	1048.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.361e+00;DB;DP=72;ExcessHet=3.0103;FS=0.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-7.770e-01;SOR=0.572;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,42:72:99:1057,0,828
chr4	143326312	rs138973882	AAGAG	A	726.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.700e-02;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.04;ReadPosRankSum=2.49;SOR=0.892;VQSLOD=5.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:6,12:18:99:486,0,238
chr4	143326580	.	A	T	291.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.410e-01;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.56;ReadPosRankSum=-1.210e+00;SOR=1.329;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:300,0,285
chr4	143344653	rs79389786	AACAG	A	324.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.43;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:99:204,0,108
chr4	143344785	rs3775712	T	G	686.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.42;DB;DP=22;ExcessHet=3.9794;FS=5.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.789;SOR=1.721;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:241,0,367
chr4	143344974	.	TA	T	592.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.81;ReadPosRankSum=1.36;SOR=0.763;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,6:29:82:82,0,542
chr4	143348523	rs3775717	A	G	56.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.07;ReadPosRankSum=0.619;SOR=0.169;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:65:65,0,214
chr4	143348680	rs3775718	C	T	524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.220e-01;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=-4.500e-02;SOR=0.812;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,27:67:99:533,0,920
chr4	143352065	rs62328324	T	C	342.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.44;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr4	144124492	rs4234886	G	A	2652.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432e+00;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-2.190e-01;SOR=0.906;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:427,0,425
chr4	144130979	rs148666231	A	AT	569.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.160e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=0.366;SOR=2.753;VQSLOD=6.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:39:124,0,39
chr4	144135718	rs4285045	G	A	6572.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=85;ExcessHet=3.9794;FS=2.384;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.16;ReadPosRankSum=0.264;SOR=0.750;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,34:85:99:911,0,1401
chr4	144264722	rs300919	T	C	3386.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=106;ExcessHet=3.9794;FS=2.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-7.180e-01;SOR=0.527;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,61:106:99:1562,0,1093
chr4	144378748	rs144852070	CT	C	339.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.490e-01;DB;DP=14;ExcessHet=6.9897;FS=1.597;MQ=59.56;MQRankSum=-4.520e-01;QD=9.97;ReadPosRankSum=-1.000e-03;SOR=1.112;VQSLOD=0.350;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:70:70,0,111
chr4	144380399	rs13114896	G	A	691.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=5.784;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:708,51,0
chr4	144381401	rs3795246	A	G	369.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=4.615;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:386,27,0
chr4	144381463	rs28924068	A	G	1131.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.32;SOR=2.368;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1148,104,0
chr4	144438458	rs374333932	T	C	387.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.10;ReadPosRankSum=-1.360e+00;SOR=0.874;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:396,0,357
chr4	144438595	rs35601522	C	T	1329.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=34;ExcessHet=1.5490;FS=2.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=1.56;SOR=1.031;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:383,0,597
chr4	144442735	rs11541117	C	T	1824.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154e+00;DB;DP=29;ExcessHet=3.9794;FS=1.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.41;ReadPosRankSum=0.637;SOR=1.038;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:314,0,488
chr4	144445764	rs75237294	T	C	542.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=14;ExcessHet=3.9794;FS=1.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=2.01;SOR=1.420;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:144445764_T_C:48,0,601:144445764
chr4	144445789	rs6857360	C	T	1539.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DB;DP=9;ExcessHet=3.9794;FS=6.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=2.20;SOR=3.755;VQSLOD=14.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:144445764_T_C:63,0,444:144445764
chr4	144447630	rs7694156	T	C	2309.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=74;ExcessHet=3.9794;FS=2.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.930;SOR=0.479;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:931,0,1041
chr4	144456124	rs6818251	A	G	7442.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=0.874;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2523,237,0
chr4	144459637	rs4690724	T	C	773.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=1.31;SOR=0.902;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:361,0,340
chr4	144466050	rs7692376	A	G	1087.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DB;DP=40;ExcessHet=3.9794;FS=7.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=-5.400e-02;SOR=0.200;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:534,0,591
chr4	144466100	.	CTT	CT,C	357.44	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.765;DP=9;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=-9.060e-01;SOR=3.702;VQSLOD=3.70;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,5,3:9:46:169,50,46,79,0,99
chr4	144467104	rs13139128	T	C	3312.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=0.731;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:876,87,0
chr4	144469383	rs2088415	A	G	805.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=22;ExcessHet=3.9794;FS=1.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.067;SOR=0.497;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:268,0,366
chr4	144471378	.	C	CTT	263.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.590e-01;DP=22;ExcessHet=6.9897;FS=1.773;MQ=59.94;MQRankSum=0.00;QD=3.71;ReadPosRankSum=-8.940e-01;SOR=0.915;VQSLOD=5.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,3:22:75:75,0,383
chr4	144471402	rs1979776	T	G	811.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DB;DP=20;ExcessHet=3.9794;FS=6.885;MQ=59.79;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.257;SOR=1.802;VQSLOD=4.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:408,0,269
chr4	144471460	rs6810805	T	C	1432.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.45;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=-1.350e-01;SOR=2.252;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:109,0,176
chr4	144474067	rs1874675	A	G	520.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=0.231;SOR=1.708;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:59:59,0,105
chr4	144474090	rs3052850	AAGT	A	254.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=1.42;SOR=0.693;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:109,0,117
chr4	144614530	rs36083752	T	A	428.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.718e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.44;ReadPosRankSum=0.700;SOR=1.127;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr4	144617842	rs1545437	G	T	5785.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.070e-01;DB;DP=146;ExcessHet=6.9897;FS=1.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.639;SOR=0.863;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,72:146:99:1771,0,2209
chr4	144618610	rs1034494	G	C	6847.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=1.103;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2182,192,0
chr4	144620758	rs61427459	C	T	4246.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DB;DP=92;ExcessHet=6.9897;FS=1.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.263;SOR=0.790;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,51:92:99:1423,0,1096
chr4	144621199	rs11100802	A	G	8771.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=213;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.172;SOR=0.691;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,94:213:99:2603,0,3212
chr4	144621779	rs55935372	A	G	2525.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=38;ExcessHet=6.9897;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=-5.710e-01;SOR=0.502;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:758,0,390
chr4	144794616	rs66570349	C	T	448.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DB;DP=16;ExcessHet=3.9794;FS=2.895;MQ=59.08;MQRankSum=1.27;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=1.74;SOR=0.499;VQSLOD=-1.205e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:213,0,229
chr4	144797848	rs6537203	G	T	1186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=36;ExcessHet=3.9794;FS=2.061;MQ=59.18;MQRankSum=-1.037e+00;QD=13.03;ReadPosRankSum=1.12;SOR=0.476;VQSLOD=-8.580e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,23:36:99:691,0,313
chr4	144799840	rs3775246	G	A	2817.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=80;ExcessHet=3.9794;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-3.000e-02;SOR=0.649;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,49:80:99:1328,0,743
chr4	144801415	rs2305068	G	A	484.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=53.64;MQRankSum=-1.478e+00;NEGATIVE_TRAIN_SITE;QD=16.69;ReadPosRankSum=0.652;SOR=0.631;VQSLOD=-2.818e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:93:93,0,144
chr4	144801662	rs1132785	C	G,T	10619.67	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=189;ExcessHet=3.0103;FS=0.000;MQ=56.29;MQRankSum=-4.759e+00;NEGATIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-1.690e-01;SOR=0.729;VQSLOD=-3.554e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:62,54,73:189:99:2154,350,3494,336,0,1799
chr4	144801728	rs201075956	C	T	3246.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050e+00;DB;DP=102;ExcessHet=6.9897;FS=7.691;MQ=56.46;MQRankSum=-7.065e+00;QD=9.12;ReadPosRankSum=-2.438e+00;SOR=1.156;VQSLOD=-3.697e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:82,20:102:99:0|1:144801728_C_T:573,0,3380:144801728
chr4	144801729	rs201847905	A	G	3246.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.11;DB;DP=100;ExcessHet=6.9897;FS=7.880;MQ=56.40;MQRankSum=-7.311e+00;QD=9.28;ReadPosRankSum=-2.225e+00;SOR=1.187;VQSLOD=-3.763e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:81,19:100:99:0|1:144801728_C_T:573,0,3380:144801728
chr4	144801798	rs2305066	C	G	1429.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.184e+00;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=56.13;MQRankSum=-3.133e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.64;ReadPosRankSum=-8.800e-02;SOR=0.569;VQSLOD=-1.751e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:447,0,735
chr4	144802964	rs6824687	T	C	786.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023e+00;DB;DP=27;ExcessHet=3.9794;FS=2.549;MQ=59.47;MQRankSum=-1.196e+00;QD=14.29;ReadPosRankSum=0.116;SOR=0.369;VQSLOD=-8.798e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,14:27:99:349,0,343
chr4	144803130	rs6819885	A	G	651.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=20;ExcessHet=3.9794;FS=9.519;MQ=52.11;MQRankSum=-3.718e+00;NEGATIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=0.189;SOR=2.584;VQSLOD=-3.367e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:346,0,249
chr4	144809800	rs143390057	C	A	2405.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e-01;DB;DP=38;ExcessHet=6.9897;FS=1.865;MQ=41.55;MQRankSum=-4.190e-01;QD=13.44;ReadPosRankSum=0.198;SOR=0.702;VQSLOD=-4.806e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,24:38:99:589,0,268
chr4	144811428	rs4095436	A	G	3494.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=57.34;POSITIVE_TRAIN_SITE;QD=33.27;SOR=3.080;VQSLOD=3.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1043,93,0
chr4	144811470	rs4095435	A	G	1631.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=52.30;POSITIVE_TRAIN_SITE;QD=31.20;SOR=6.043;VQSLOD=3.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:680,51,0
chr4	144811497	rs1858318	G	A	1184.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=49.86;NEGATIVE_TRAIN_SITE;QD=30.04;SOR=6.869;VQSLOD=1.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:480,36,0
chr4	144823837	rs4600867	A	G	822.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=57.87;QD=24.55;SOR=3.258;VQSLOD=2.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr4	144823891	rs6817423	C	A	775.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=56.94;POSITIVE_TRAIN_SITE;QD=29.11;SOR=1.721;VQSLOD=3.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr4	144824269	rs1899967	C	T	22885.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=51.13;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.40;SOR=1.808;VQSLOD=1.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:6704,533,0
chr4	144824338	rs115881825	T	C	1575.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=56;ExcessHet=3.9794;FS=2.686;MQ=52.57;MQRankSum=1.32;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=2.09;SOR=0.334;VQSLOD=-1.579e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,25:56:99:765,0,1053
chr4	144824346	rs4091835	T	G	200.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.626e+00;DB;DP=47;ExcessHet=3.9794;FS=4.398;MQ=52.34;MQRankSum=-3.440e+00;NEGATIVE_TRAIN_SITE;QD=1.93;ReadPosRankSum=-2.917e+00;SOR=1.501;VQSLOD=-3.417e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,8:47:99:142,0,1489
chr4	144826407	rs1838522	C	G	2273.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=34;ExcessHet=6.9897;FS=4.485;MQ=55.79;MQRankSum=0.186;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.175;SOR=1.316;VQSLOD=0.324;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:645,0,344
chr4	144915305	rs58330263	T	A	174.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=53.80;MQRankSum=0.00;QD=29.15;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=1.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:36:0|1:144915305_T_A:81,0,36:144915305
chr4	144915328	rs57248982	C	A	270.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=5;ExcessHet=6.9897;FS=7.375;MQ=55.94;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.00;SOR=0.044;VQSLOD=-1.324e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:72:0|1:144915305_T_A:100,0,72:144915305
chr4	144915409	rs140768384	TTA	T	715.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.393;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=58.83;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.701;SOR=0.636;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,3:14:93:93,0,455
chr4	144917514	rs1980037	A	C	1558.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.11;POSITIVE_TRAIN_SITE;QD=30.49;SOR=2.531;VQSLOD=4.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:503,45,0
chr4	144918521	rs71590423	C	CAA	469.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.328;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=-3.280e-01;SOR=1.022;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:99:114,0,129
chr4	144918712	rs1132783	C	G	4029.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=106;ExcessHet=3.9794;FS=2.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.526;SOR=0.876;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,66:106:99:1888,0,945
chr4	144918867	rs1473055	A	G	4726.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.540e-01;DB;DP=116;ExcessHet=6.9897;FS=11.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.233;SOR=1.201;VQSLOD=17.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,62:116:99:1675,0,1342
chr4	144918893	rs4835126	A	G	3767.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=88;ExcessHet=6.9897;FS=20.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-3.410e-01;SOR=1.773;VQSLOD=11.77;culprit=FS	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1274,0,1131
chr4	144918900	rs1849110	G	A	9644.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=2.429;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3197,257,0
chr4	144920480	rs7661933	A	T	5248.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=125;ExcessHet=6.9897;FS=1.831;MQ=59.46;MQRankSum=-2.640e+00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-3.230e-01;SOR=0.890;VQSLOD=-1.552e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:61,64:125:99:1733,0,1521
chr4	144920596	rs7683365	G	A	4514.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=102;ExcessHet=6.9897;FS=8.483;MQ=59.88;MQRankSum=-7.670e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.859;SOR=0.387;VQSLOD=0.555;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,63:102:99:1591,0,958
chr4	144920638	rs7662277	A	T	3157.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.811e+00;DB;DP=60;ExcessHet=6.9897;FS=10.771;MQ=59.60;MQRankSum=-1.225e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.98;ReadPosRankSum=0.227;SOR=0.191;VQSLOD=-4.411e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,40:60:99:1244,0,591
chr4	144921607	rs1849119	C	T	5582.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.01;SOR=1.270;VQSLOD=5.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1789,183,0
chr4	144922436	rs201662569	T	G	52.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.905e+00;DB;DP=128;ExcessHet=3.0103;FS=3.477;MQ=54.15;MQRankSum=-5.431e+00;QD=0.41;ReadPosRankSum=-8.060e-01;SOR=0.372;VQSLOD=-4.357e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:110,18:128:61:61,0,2980
chr4	144938033	rs5862681	A	AT	3559.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.04;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=43.75;MQRankSum=2.30;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=0.146;SOR=0.963;VQSLOD=1.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1494,120,0
chr4	144938047	rs12503691	C	T	1358.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=48;ExcessHet=3.9794;FS=13.495;MQ=46.62;MQRankSum=2.85;QD=15.98;ReadPosRankSum=1.56;SOR=0.222;VQSLOD=-3.980e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,33:48:99:773,0,429
chr4	144938081	rs28373876	C	T	3592.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=45.63;POSITIVE_TRAIN_SITE;QD=31.51;SOR=1.009;VQSLOD=-2.599e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1418,143,0
chr4	144938120	rs4561879	T	C	4081.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=47.50;QD=29.24;SOR=1.688;VQSLOD=-2.294e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:144938120_T_C:1620,108,0:144938120
chr4	144938121	rs4561880	G	C	4081.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=47.50;QD=28.77;SOR=1.688;VQSLOD=-2.502e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:144938120_T_C:1620,108,0:144938120
chr4	144938216	rs4340756	A	G	472.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.690e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=50.85;MQRankSum=-1.113e+00;NEGATIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.249;SOR=1.022;VQSLOD=-2.941e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:128,0,217
chr4	145034909	.	TAGAC	T	2062.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.310e-01;DP=106;ExcessHet=3.0103;FS=0.712;MQ=60.00;MQRankSum=0.00;QD=19.46;ReadPosRankSum=1.12;SOR=0.622;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,54:106:99:2071,0,2839
chr4	145035613	rs10699715	G	GTT	527.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.99;SOR=5.670;VQSLOD=5.07;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:105,9,0
chr4	145035788	rs6857303	G	A	1638.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360e-01;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=0.040;SOR=0.718;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:740,0,898
chr4	145036128	rs12645789	T	C	214.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=2.303;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
chr4	145037980	rs6824244	C	G	7269.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.49;SOR=2.694;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1854,159,0
chr4	145038318	rs62334650	C	T	1578.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.23;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=57.18;MQRankSum=0.020;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=1.07;SOR=1.066;VQSLOD=-5.694e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:351,0,285
chr4	145039659	rs6835963	G	T	2108.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=56.89;POSITIVE_TRAIN_SITE;QD=29.44;SOR=5.630;VQSLOD=4.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:555,39,0
chr4	145040784	rs62334651	T	C	3713.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357e+00;DB;DP=53;ExcessHet=3.9794;FS=3.708;MQ=59.59;MQRankSum=-6.670e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=0.840;SOR=0.461;VQSLOD=-1.019e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,31:53:99:722,0,576
chr4	145040962	rs6857144	C	G	5463.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=58.62;POSITIVE_TRAIN_SITE;QD=36.83;SOR=2.462;VQSLOD=3.76;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,33:33:99:1|1:145040962_C_G:1472,99,0:145040962
chr4	145040963	rs6833563	A	T	5463.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=58.61;POSITIVE_TRAIN_SITE;QD=22.53;SOR=2.443;VQSLOD=1.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:145040962_C_G:1472,99,0:145040962
chr4	145040999	rs62334652	T	C	1123.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=56.38;MQRankSum=-1.911e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.56;ReadPosRankSum=-6.320e-01;SOR=1.064;VQSLOD=-1.038e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:130,0,370
chr4	145041036	rs62334653	G	A	568.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=53.53;MQRankSum=-2.830e+00;NEGATIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=-6.250e-01;SOR=0.588;VQSLOD=-3.021e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:65:65,0,189
chr4	145041071	rs10559726	CAA	C	72.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=54.16;MQRankSum=0.967;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=1.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:29:81,0,29
chr4	145041686	rs4867	A	G	3115.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=47.01;QD=33.87;SOR=0.929;VQSLOD=-3.504e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1782,168,0
chr4	145041707	rs7658293	C	A	1846.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=54;ExcessHet=3.0103;FS=0.775;MQ=45.69;MQRankSum=-1.245e+00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-2.537e+00;SOR=0.631;VQSLOD=-2.657e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,5:54:62:0|1:145041707_C_A:62,0,2037:145041707
chr4	145041708	rs7687256	T	C	1846.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=54;ExcessHet=3.0103;FS=0.775;MQ=45.69;MQRankSum=-1.245e+00;QD=19.65;ReadPosRankSum=-2.612e+00;SOR=0.631;VQSLOD=-4.411e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,5:54:62:0|1:145041707_C_A:62,0,2037:145041707
chr4	145041741	rs4449373	T	G	3265.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=48.24;QD=31.91;SOR=1.065;VQSLOD=-2.567e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1462,138,0
chr4	145573954	rs3215015	GA	G	601.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=47;ExcessHet=3.0103;FS=1.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=-1.291e+00;SOR=1.112;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,25:47:99:610,0,497
chr4	145579907	rs6537301	G	A	834.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=20;ExcessHet=3.9794;FS=4.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.076;SOR=1.655;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:288,0,222
chr4	145580290	rs1355601	C	A	113.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.75;SOR=2.833;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr4	145580585	rs1355602	A	C	131.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=-4.310e-01;SOR=1.329;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:69:139,0,69
chr4	145627971	rs74730596	G	A	200.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.21;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:209,0,177
chr4	145629630	rs2254637	A	T	4138.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.83;SOR=2.364;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1018,81,0
chr4	145636732	rs6537310	T	C	96.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=-3.280e-01;SOR=0.495;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:105,0,136
chr4	145655769	rs35694650	T	TA	92.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.10;ReadPosRankSum=-5.530e-01;SOR=0.569;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:101,0,145
chr4	145656211	rs11100867	T	C	43.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.60;ReadPosRankSum=1.29;SOR=0.307;VQSLOD=22.52;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:52:52,0,351
chr4	145659064	rs11727676	T	C	637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920e-01;DB;DP=62;ExcessHet=3.0103;FS=5.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=-4.810e-01;SOR=1.577;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,25:62:99:646,0,1031
chr4	146018819	rs1455135	T	C	4547.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.94;SOR=2.284;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1281,107,0
chr4	146025353	rs17725516	A	G	108.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:117,0,31
chr4	146031236	.	AT	A	156.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884e+00;DP=9;ExcessHet=6.9897;FS=1.338;MQ=60.00;MQRankSum=0.00;QD=2.91;ReadPosRankSum=0.501;SOR=0.368;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,3:9:47:47,0,106
chr4	146033368	.	CT	C	416.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.454;DP=44;ExcessHet=6.9897;FS=2.108;MQ=59.81;MQRankSum=0.878;QD=3.02;ReadPosRankSum=0.758;SOR=0.526;VQSLOD=0.094;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,14:44:99:168,0,534
chr4	146046138	rs4835203	T	C	4461.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=4.303;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1148,90,0
chr4	146048554	rs4148234	T	C	1416.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.800e-01;DB;DP=136;ExcessHet=3.0103;FS=1.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=-1.753e+00;SOR=0.532;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,60:136:99:1425,0,1866
chr4	146048583	rs1378314	T	G	15172.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=166;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=0.878;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,166:166:99:5054,497,0
chr4	146062320	.	CA	C	212.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DP=7;ExcessHet=3.9794;FS=1.816;MQ=60.00;MQRankSum=0.00;QD=7.86;ReadPosRankSum=1.37;SOR=1.329;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:41:41,0,50
chr4	146064244	.	C	T	116.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.745e+00;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.63;ReadPosRankSum=-1.483e+00;SOR=0.412;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:125,0,208
chr4	146065006	rs9991890	C	T	3753.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.692;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1475,150,0
chr4	146080577	rs35205083	AT	A	175.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.120e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-1.368e+00;SOR=1.085;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:99:184,0,112
chr4	146085049	rs6537331	A	G	325.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.19;SOR=4.615;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr4	146086269	rs17726651	C	T	451.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.076;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=1.90;SOR=0.566;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,21:46:99:460,0,567
chr4	146436286	rs377610507	CTG	C	300.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=-6.010e-01;SOR=2.093;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chr4	146475243	rs10715854	CT	C	1357.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.450e-01;DB;DP=57;ExcessHet=6.9897;FS=9.038;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.504;SOR=0.267;VQSLOD=4.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:27,21:57:99:362,0,581
chr4	146617590	rs13104422	T	C	679.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.579e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=1.58;SOR=1.688;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:35:429,35,0
chr4	146650833	rs4835253	C	G	191.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=0.366;SOR=1.609;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:59:200,0,59
chr4	146681872	.	GT	G	1952.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DP=35;ExcessHet=3.9794;FS=5.081;MQ=59.71;MQRankSum=-3.790e-01;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.511;SOR=1.413;VQSLOD=0.350;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,25:35:18:530,0,18
chr4	146686396	rs76846242	C	G	935.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.740e-01;DB;DP=17;ExcessHet=3.9794;FS=1.266;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.352;SOR=1.054;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:304,0,171
chr4	146686414	rs79822587	C	T	636.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.550e-01;DB;DP=13;ExcessHet=3.9794;FS=1.448;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=1.07;SOR=1.101;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:98:249,0,98
chr4	146686561	rs4348115	C	A	616.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=0.914;VQSLOD=19.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:173,15,0
chr4	146697063	rs6818581	A	G	1163.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.716e+00;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.867;SOR=0.764;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,47:82:99:1172,0,924
chr4	146700781	rs9308196	A	T	479.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.540e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=0.728;SOR=0.929;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:488,0,514
chr4	146767313	rs34221205	C	A	683.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.177e+00;DB;DP=25;ExcessHet=3.9794;FS=3.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.737;SOR=0.260;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:450,0,279
chr4	146770400	rs28497499	T	A	661.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148e+00;DB;DP=19;ExcessHet=3.9794;FS=5.067;MQ=60.00;MQRankSum=0.00;QD=13.49;ReadPosRankSum=1.69;SOR=0.228;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:150,0,384
chr4	146806762	rs200880217	CAGAGAGAG	C,CAG	2240.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.02;DB;DP=32;ExcessHet=3.9794;FS=2.468;MQ=59.70;MQRankSum=1.14;POSITIVE_TRAIN_SITE;QD=28.37;ReadPosRankSum=1.20;SOR=1.137;VQSLOD=1.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,18,8:32:99:1018,211,126,522,0,485
chr4	147104263	rs919483	A	G	2007.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=63;ExcessHet=6.9897;FS=0.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.385;SOR=0.784;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:787,0,835
chr4	147110652	rs17757715	C	T	549.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=0.413;SOR=0.752;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:140,0,166
chr4	147110891	rs7745	A	G	752.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.150e-01;DB;DP=32;ExcessHet=6.9897;FS=3.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.96;ReadPosRankSum=0.040;SOR=1.201;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,11:32:99:228,0,577
chr4	147149897	rs28605093	G	A	269.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=0.00;SOR=0.582;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:116,0,261
chr4	147150481	rs17021264	C	T	224.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=1.37;SOR=0.818;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:102,0,115
chr4	147177822	rs28406249	A	G	1273.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-4.780e-01;SOR=0.682;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:328,0,326
chr4	147177868	rs34063596	T	TC	1935.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=31;ExcessHet=1.5490;FS=5.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=1.65;SOR=1.402;VQSLOD=6.35;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1007,93,0
chr4	147213912	rs4516736	T	C	283.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.842;SOR=0.446;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	147214029	rs12711434	C	A	706.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-02;DB;DP=32;ExcessHet=3.9794;FS=3.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=1.08;SOR=0.348;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,13:32:99:287,0,463
chr4	147364052	rs1344140	C	T	1305.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.658e+00;DB;DP=18;ExcessHet=1.5490;FS=4.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=-4.900e-02;SOR=0.177;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,13:18:99:431,0,167
chr4	147425114	rs7439061	A	T	2418.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=28;ExcessHet=3.0103;FS=8.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.50;ReadPosRankSum=2.21;SOR=2.287;VQSLOD=18.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:448,0,288
chr4	147431302	rs6816737	G	A	1124.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=1.31;SOR=2.368;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:59:194,0,59
chr4	147560457	rs67194443	T	TGGC	23997.15	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=194;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=0.935;SOR=0.393;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,191:194:99:7740,463,0
chr4	147560692	rs1504360	T	A	6010.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=3.860;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2527,206,0
chr4	147628903	rs905712	C	T	607.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=5.549;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	147824864	rs17610219	G	A	6500.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.830e-01;DB;DP=70;ExcessHet=3.0103;FS=3.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=-1.299e+00;SOR=0.429;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,36:70:99:880,0,872
chr4	147830499	rs3810844	C	T	580.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e-01;DB;DP=14;ExcessHet=3.0103;FS=8.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.712;SOR=3.611;VQSLOD=13.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:168,0,279
chr4	147859040	rs34970291	G	A	525.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.47;SOR=5.421;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	148265670	rs3063775	AATTT	A	388.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=0.00;SOR=1.061;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:53:81,0,53
chr4	148441139	rs4835412	G	A	2361.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=101;ExcessHet=3.9794;FS=0.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=1.55;SOR=0.622;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,38:101:99:912,0,1510
chr4	148457009	rs71594223	T	TTC	1208.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.26;ReadPosRankSum=1.37;SOR=0.835;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,14:27:99:547,0,443
chr4	148461037	rs5333	T	C	733.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.64;ReadPosRankSum=1.69;SOR=0.719;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,12:42:99:242,0,758
chr4	148461073	rs5334	G	A	966.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DB;DP=41;ExcessHet=3.9794;FS=1.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-8.130e-01;SOR=0.530;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,15:41:99:334,0,660
chr4	148461378	rs2292765	G	A	274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=0.567;SOR=1.251;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:167,0,203
chr4	148463840	rs5335	G	C	7020.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=73;ExcessHet=3.0103;FS=2.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=0.827;SOR=0.541;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2491,219,0
chr4	148544796	rs11400483	A	AT	390.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=5;ExcessHet=6.9897;FS=3.098;MQ=60.00;MQRankSum=0.00;QD=15.61;ReadPosRankSum=0.674;SOR=2.030;VQSLOD=5.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:12:91,0,12
chr4	148554421	rs2654937	T	C	493.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.89;ReadPosRankSum=0.967;SOR=4.047;VQSLOD=14.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:1:58,0,1
chr4	148560357	rs2654935	C	T	1499.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.69;SOR=4.615;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:220,21,0
chr4	148589677	rs2718454	C	T	12553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.94;SOR=1.640;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4036,385,0
chr4	148591550	rs2036501	G	A	314.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.08;POSITIVE_TRAIN_SITE;QD=31.22;SOR=4.407;VQSLOD=5.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr4	148591769	rs2036502	G	T	6318.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=1.505;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2109,201,0
chr4	148601729	rs7666065	C	T	866.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=6.273;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr4	148604886	rs6535547	G	A	2722.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.46;POSITIVE_TRAIN_SITE;QD=31.30;SOR=1.356;VQSLOD=5.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:90:1|1:148604871_CT_C:908,90,0:148604871
chr4	148778685	rs11410393	G	GT	3598.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e-01;DB;DP=41;ExcessHet=3.0103;FS=4.389;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=0.465;SOR=0.359;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,40:41:95:1095,95,0
chr4	148787669	rs4240341	G	A	1227.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.623e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=-1.135e+00;SOR=1.473;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:281,21,0
chr4	148796464	rs7663294	C	G	3593.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.158;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=0.209;SOR=0.714;VQSLOD=6.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:302,0,420
chr4	148800299	rs13147854	A	G	5986.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.68;SOR=1.560;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1816,180,0
chr4	148827697	rs35780665	T	TA	2381.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.605;DB;DP=40;ExcessHet=3.0103;FS=2.018;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=-2.480e-01;SOR=1.075;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,37:40:35:938,35,0
chr4	148827747	rs12509618	A	C	5358.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=9.000e-03;DB;DP=71;ExcessHet=3.0103;FS=4.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.40;ReadPosRankSum=0.120;SOR=1.171;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2038,212,0
chr4	148827973	rs11099672	A	G	1926.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.695;DB;DP=17;ExcessHet=3.0103;FS=7.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=0.712;SOR=0.115;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:592,51,0
chr4	148828034	rs11734553	A	G	573.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.32;ReadPosRankSum=-9.670e-01;SOR=4.047;VQSLOD=14.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr4	148831070	rs4627844	A	G	1431.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.200e-01;DB;DP=10;ExcessHet=3.0103;FS=3.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=-3.480e-01;SOR=0.278;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:365,30,0
chr4	148984082	rs2884401	G	C	1733.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.032e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=0.385;SOR=1.252;VQSLOD=6.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:631,48,0
chr4	148985720	rs3775327	T	C	3087.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.166;DB;DP=37;ExcessHet=3.9794;FS=1.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=-1.290e-01;SOR=0.574;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1220,111,0
chr4	148985862	rs2358183	T	C	688.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.362e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.52;ReadPosRankSum=1.29;SOR=2.066;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:297,24,0
chr4	148985906	rs2358184	A	G	220.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.54;ReadPosRankSum=0.967;SOR=2.584;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr4	149002016	rs10708334	AT	A	883.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.586;DB;DP=21;ExcessHet=1.5490;FS=1.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=1.09;SOR=1.022;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,21:21:63:656,63,0
chr4	149002841	rs3733421	T	C	754.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.640e-01;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=-6.950e-01;SOR=0.487;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:565,54,0
chr4	149035449	rs1879829	T	C	4696.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.613e+00;DB;DP=98;ExcessHet=1.5490;FS=2.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=-1.502e+00;SOR=0.545;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2996,294,0
chr4	149073555	rs2272089	C	T	1361.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=4.294;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:542,45,0
chr4	149076195	rs7668847	A	G	1150.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.589e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=1.30;SOR=0.650;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:717,57,0
chr4	149116035	rs4835500	A	G	6388.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=63;ExcessHet=3.0103;FS=10.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=1.14;SOR=1.501;VQSLOD=18.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2085,189,0
chr4	149116159	rs3910056	T	C	754.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.03;ReadPosRankSum=1.83;SOR=1.697;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:219,15,0
chr4	149356516	rs5525	A	G	9427.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031e+00;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=-3.560e-01;SOR=0.725;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,55:128:99:1300,0,1876
chr4	149357475	rs5522	C	T	15482.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=183;ExcessHet=3.0103;FS=1.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.843;SOR=0.541;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,79:183:99:1880,0,2595
chr4	151024105	rs10598187	ATG	A	158.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=1.28;SOR=0.892;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:59:59,0,134
chr4	151119353	rs1124359	G	A	382.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=23;ExcessHet=3.0103;FS=4.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.092;SOR=2.093;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:391,0,281
chr4	151120062	rs35851047	A	AC	455.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.639;DB;DP=17;ExcessHet=3.9794;FS=1.808;MQ=59.61;MQRankSum=0.00;QD=14.68;ReadPosRankSum=-8.300e-01;SOR=1.371;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:14:291,0,14
chr4	151124754	rs5862912	G	GT	368.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=0.674;SOR=4.407;VQSLOD=3.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:172,21,0
chr4	151142215	rs727426	C	G	230.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=2.584;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr4	151143124	.	G	GTTTA	76.46	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.90;SOR=0.693;VQSLOD=3.62;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr4	151143128	rs13108375	G	A	79.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.64;SOR=0.693;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr4	151161342	rs6812795	G	A	2910.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.435e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.34;ReadPosRankSum=0.00;SOR=0.555;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1083,93,0
chr4	151161470	rs11931842	A	G	2973.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.63;SOR=1.329;VQSLOD=4.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2990,281,0
chr4	151161490	rs6838238	T	C	11286.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=33.69;SOR=1.432;VQSLOD=4.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3435,305,0
chr4	151161502	rs6813035	G	T	11584.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.06;SOR=1.163;VQSLOD=4.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3597,352,0
chr4	151177341	rs13152820	C	G	2730.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.46;DB;DP=29;ExcessHet=3.0103;FS=19.549;MQ=60.00;MQRankSum=0.00;QD=27.08;ReadPosRankSum=2.38;SOR=6.479;VQSLOD=7.29;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:87:1|1:151177340_C_T:1148,87,0:151177340
chr4	151177432	rs13101258	A	C	1151.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.34;SOR=3.841;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:304,27,0
chr4	151187225	rs36231594	AGTAACTAAAATCTGAACAGATTT	A	123.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=2.833;VQSLOD=5.94;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:10:137,10,0
chr4	151198823	rs1870515	T	A	1426.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.71;SOR=6.358;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:48:457,48,0
chr4	151199497	rs2290847	A	G	270.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=2.833;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	151231371	rs1813134	T	C	2583.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=2.084;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1716,167,0
chr4	151247294	rs2292207	C	A	230.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=3.912;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	151271452	rs13145548	A	G	1538.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.732e+00;DB;DP=11;ExcessHet=3.0103;FS=2.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=-5.320e-01;SOR=0.273;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:449,33,0
chr4	151393093	rs7673944	G	C	301.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.126;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:252,18,0
chr4	151408800	rs7674989	T	C	1130.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.026;DB;DP=8;ExcessHet=3.0103;FS=2.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.58;ReadPosRankSum=-1.698e+00;SOR=1.900;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:317,24,0
chr4	151505322	rs13105060	T	A	5833.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DB;DP=86;ExcessHet=3.0103;FS=0.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=-4.360e-01;SOR=0.820;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2836,258,0
chr4	151511715	rs4401437	T	G	1416.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.744e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-9.900e-02;SOR=1.781;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:702,57,0
chr4	151656589	rs1993109	C	T	3098.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.55;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.99;ReadPosRankSum=-1.040e+00;SOR=1.051;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1330,105,0
chr4	151765243	rs186080	G	A	5162.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.866;DB;DP=62;ExcessHet=3.0103;FS=4.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.676;SOR=0.701;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1759,185,0
chr4	151792401	rs41280457	T	G	418.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=-3.170e-01;SOR=0.693;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:427,0,148
chr4	151829659	rs1201207	T	C	4415.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.74;SOR=1.907;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1208,90,0
chr4	152024326	rs4696658	T	G	3254.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.612e+00;DB;DP=31;ExcessHet=3.0103;FS=2.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.68;ReadPosRankSum=0.378;SOR=0.368;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1029,93,0
chr4	152025273	rs3830541	G	GCTTAT	1457.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.58;DB;DP=15;ExcessHet=3.0103;FS=3.062;MQ=60.00;MQRankSum=0.00;QD=33.13;ReadPosRankSum=2.11;SOR=0.413;VQSLOD=4.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:48:713,48,0
chr4	152025591	rs376710058	G	GTTT	391.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=59.61;MQRankSum=2.17;QD=20.59;ReadPosRankSum=0.737;SOR=1.179;VQSLOD=0.333;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:0,4:6:3:139,0,3
chr4	152043663	rs3064664	T	TCACACA	1836.11	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.150e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.11;ReadPosRankSum=-2.450e-01;SOR=0.602;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:47:693,47,0
chr4	152048936	rs11099782	A	T	1748.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.204e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=0.221;SOR=0.498;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:809,66,0
chr4	152053302	rs7659146	A	G	444.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.88;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=0.906;SOR=1.609;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr4	152053408	rs7664483	G	A	3617.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.742e+00;DB;DP=43;ExcessHet=3.0103;FS=3.327;MQ=59.99;MQRankSum=1.18;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=1.10;SOR=0.397;VQSLOD=2.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1292,129,0
chr4	152061201	rs2280280	T	C	488.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.823e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=0.405;SOR=1.828;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:149,12,0
chr4	152065684	rs6818900	A	G	869.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.530e-01;DB;DP=20;ExcessHet=3.9794;FS=1.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=0.038;SOR=0.448;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:282,0,281
chr4	152069406	rs150487703	TACACACACACACACAC	T	1448.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370e-01;DB;DP=24;ExcessHet=6.9897;FS=7.140;MQ=60.00;MQRankSum=0.00;QD=19.32;ReadPosRankSum=-4.680e-01;SOR=0.223;VQSLOD=4.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,10:24:99:378,0,2098
chr4	152069566	rs6846323	C	T	455.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=4.977;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:172,12,0
chr4	152070633	rs3792611	T	A	4362.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.298e+00;DB;DP=65;ExcessHet=3.0103;FS=0.616;MQ=59.95;MQRankSum=0.786;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=6.000e-03;SOR=0.601;VQSLOD=2.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2020,195,0
chr4	152201018	rs148861921	G	GCAGGT	5510.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.591e+00;DB;DP=71;ExcessHet=1.5490;FS=2.412;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.02;ReadPosRankSum=-4.890e-01;SOR=0.472;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,34:71:99:1389,0,1446
chr4	152201053	rs36097019	G	A	2073.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.325e+00;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-4.290e-01;SOR=0.726;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:893,0,1003
chr4	152201204	rs1875308	A	G	4188.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=1.746;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1115,102,0
chr4	152201265	rs13122423	A	G	361.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.03;ReadPosRankSum=-3.394e+00;SOR=0.657;VQSLOD=20.39;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,11:19:99:0|1:152201265_A_G:369,0,303:152201265
chr4	152201270	.	G	GCGGAAGGAAACCCAGGT	360.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.02;ReadPosRankSum=-3.298e+00;SOR=0.976;VQSLOD=3.99;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,10:18:99:0|1:152201265_A_G:369,0,303:152201265
chr4	152201273	.	T	TGTC	262.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.750;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;QD=17.50;ReadPosRankSum=-3.229e+00;SOR=2.546;VQSLOD=2.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,7:15:99:0|1:152201265_A_G:270,0,315:152201265
chr4	152201275	.	G	GACTATCAAACCCGAAAC	262.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;QD=17.50;ReadPosRankSum=-3.229e+00;SOR=2.546;VQSLOD=2.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,7:15:99:0|1:152201265_A_G:270,0,315:152201265
chr4	152201278	.	G	C	136.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DP=12;ExcessHet=3.0103;FS=2.881;MQ=60.00;MQRankSum=0.00;QD=11.37;ReadPosRankSum=-2.405e+00;SOR=1.721;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:152201265_A_G:144,0,324:152201265
chr4	152203664	rs6849871	C	G	2280.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.421e+00;DB;DP=19;ExcessHet=3.9794;FS=0.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=0.123;SOR=0.561;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:285,0,335
chr4	152204604	rs2407168	G	A	569.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=4.047;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr4	152212486	rs13126069	C	T	2406.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=147;ExcessHet=3.9794;FS=0.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=0.328;SOR=0.752;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,57:147:99:1382,0,2262
chr4	152212603	rs2407221	T	G	7984.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=2.072;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2986,249,0
chr4	152212704	rs13102005	T	A	423.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=22;ExcessHet=3.9794;FS=2.846;MQ=59.94;MQRankSum=0.781;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.353;SOR=1.609;VQSLOD=0.075;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,7:22:99:226,0,504
chr4	152498454	rs144415896	GAC	G	59.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=2.96;ReadPosRankSum=2.10;SOR=0.083;VQSLOD=6.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:44:44,0,254
chr4	152498625	rs17275536	C	T	1492.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=1.33;SOR=0.653;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,28:54:99:741,0,675
chr4	152507998	rs10683925	G	GCA	2232.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=65;ExcessHet=3.9794;FS=2.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=1.64;SOR=0.474;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,35:65:99:0|1:152507998_G_GCA:1331,0,1875:152507998
chr4	152508014	rs7664663	G	C	1964.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030e-01;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=2.14;SOR=0.656;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:25,29:54:99:0|1:152507998_G_GCA:1183,0,1688:152507998
chr4	152510130	rs2165789	A	T	2814.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=127;ExcessHet=3.9794;FS=0.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.74;SOR=0.655;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,67:127:99:1735,0,1389
chr4	152559717	rs11450944	T	TA	337.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-02;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=7.66;ReadPosRankSum=0.589;SOR=0.529;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:16:99:235,0,106
chr4	152583907	rs11378262	C	CT	1962.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.040e-01;DB;DP=51;ExcessHet=6.9897;FS=0.000;MQ=59.75;MQRankSum=-4.790e-01;POSITIVE_TRAIN_SITE;QD=12.58;ReadPosRankSum=-2.050e-01;SOR=0.754;VQSLOD=2.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,39:51:86:674,0,86
chr4	152592191	rs4571	T	C	582.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.120e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.29;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:279,21,0
chr4	152592469	rs112033226	A	ATTAC	2725.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.830;DB;DP=29;ExcessHet=3.9794;FS=1.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.69;ReadPosRankSum=0.543;SOR=0.495;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1304,87,0
chr4	152600699	rs2840130	T	C	1961.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.192;DB;DP=34;ExcessHet=3.9794;FS=3.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.23;ReadPosRankSum=-5.240e-01;SOR=0.421;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1047,102,0
chr4	152601146	rs907237	T	G	1494.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=25;ExcessHet=3.9794;FS=5.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=0.136;SOR=0.200;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:777,75,0
chr4	152609694	rs6535814	A	G	1311.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.450e-01;DB;DP=13;ExcessHet=3.9794;FS=5.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=1.33;SOR=1.773;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:42:1|1:152609694_A_G:612,42,0:152609694
chr4	152609700	rs6535815	A	C	1344.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.73;DB;DP=13;ExcessHet=3.9794;FS=3.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=0.592;SOR=1.350;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:42:1|1:152609694_A_G:612,42,0:152609694
chr4	152609920	rs11292952	TA	T	1113.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.49;DB;DP=20;ExcessHet=3.9794;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.05;ReadPosRankSum=0.121;SOR=0.495;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,20:20:59:480,59,0
chr4	152609998	rs11390610	C	CA	265.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.57;ReadPosRankSum=0.545;SOR=0.693;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:138,0,134
chr4	152610117	rs3749561	T	C	71.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=2.303;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	152624972	rs28706249	A	G	1100.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=38;ExcessHet=3.9794;FS=2.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.059;SOR=1.115;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:362,0,517
chr4	152626515	rs113829752	TA	T	306.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DB;DP=32;ExcessHet=6.9897;FS=6.813;MQ=60.00;MQRankSum=0.00;QD=3.26;ReadPosRankSum=-4.600e-01;SOR=0.189;VQSLOD=3.99;culprit=FS	GT:AD:DP:GQ:PL	0/1:18,14:32:99:267,0,350
chr4	152637429	rs72303576	CT	C	182.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.249;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=7.62;ReadPosRankSum=-1.350e-01;SOR=1.220;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:7:39:42,0,39
chr4	152640387	rs2303866	C	T	526.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=4;ExcessHet=3.0103;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=-9.210e-01;SOR=3.258;VQSLOD=17.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr4	152643184	rs6817586	G	A	1506.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.346e+00;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=-1.214e+00;SOR=0.681;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:680,51,0
chr4	152681952	rs1429559	A	G	2208.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.531e+00;DB;DP=103;ExcessHet=3.9794;FS=1.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.499;SOR=0.604;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,54:103:99:1361,0,1368
chr4	152682046	rs11556167	G	T	2368.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.007e+00;DB;DP=100;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=1.26;SOR=0.681;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,49:100:99:1073,0,1381
chr4	153267968	rs2714803	A	G	5657.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.98;SOR=2.910;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1544,122,0
chr4	153268227	.	CA	C	545.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.330e-01;DP=31;ExcessHet=3.9794;FS=2.725;MQ=60.00;MQRankSum=0.00;QD=6.41;ReadPosRankSum=-4.120e-01;SOR=1.032;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,6:31:61:61,0,549
chr4	153549379	rs13118583	T	G	341.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=4.407;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr4	153549745	rs138358407	C	A	744.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=58.39;QD=25.67;SOR=1.460;VQSLOD=1.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:37:329,37,0
chr4	153549852	rs9685808	A	G	200.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.12;SOR=3.611;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	153561955	rs67746656	G	C	1018.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=45;ExcessHet=3.9794;FS=1.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-8.190e-01;SOR=0.461;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:567,0,570
chr4	153562234	rs72956780	C	T	407.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.345;SOR=1.078;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:139,0,137
chr4	153564136	rs10535582	GTTC	G	217.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=1.44;SOR=0.473;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:117,0,142
chr4	153564332	rs4696333	A	G	1864.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=68;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=0.315;SOR=0.734;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,37:68:99:919,0,898
chr4	153564455	rs11731739	T	G	1410.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.700e-01;DB;DP=47;ExcessHet=3.9794;FS=4.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.160;SOR=0.372;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:613,0,602
chr4	153564509	rs34977755	CACAA	C	552.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383e+00;DB;DP=23;ExcessHet=3.0103;FS=5.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.01;ReadPosRankSum=-2.840e-01;SOR=0.086;VQSLOD=6.25;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,14:23:99:561,0,464
chr4	153565645	rs62320820	A	G	282.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.795;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.56;ReadPosRankSum=0.934;SOR=0.506;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,14:43:99:291,0,693
chr4	153565838	rs3935569	C	T	111.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.59;SOR=2.833;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr4	153568339	rs12641337	A	T	572.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=-1.242e+00;SOR=2.531;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:51:141,0,51
chr4	153690842	rs4696354	T	C	3623.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.719e+00;DB;DP=90;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=1.46;SOR=0.686;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1005,0,1170
chr4	153750918	rs10010297	G	A	2324.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-02;DB;DP=56;ExcessHet=1.5490;FS=3.396;MQ=59.81;MQRankSum=1.33;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=-8.630e-01;SOR=1.138;VQSLOD=0.959;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,35:56:99:962,0,505
chr4	153793489	rs35670437	CT	C	1238.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.440e-01;DB;DP=28;ExcessHet=1.5490;FS=1.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=0.277;SOR=0.468;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,15:28:99:383,0,319
chr4	153802060	rs80127385	A	G	221.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.861e+00;DB;DP=17;ExcessHet=3.0103;FS=2.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-3.910e-01;SOR=0.283;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:230,0,194
chr4	153870322	.	A	AAGAAGAAGAAGC	114.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.51;ReadPosRankSum=0.319;SOR=0.916;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:10:120,0,10
chr4	153881835	rs3811834	C	T	524.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=61;ExcessHet=3.0103;FS=2.258;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=-6.310e-01;SOR=0.407;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,22:61:99:533,0,978
chr4	153882057	rs4696369	A	T	219.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.353e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-1.140e-01;SOR=0.593;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:9:90,9,0
chr4	153884092	.	G	GGT	2044.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.093;DP=33;ExcessHet=3.9794;FS=1.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=0.855;SOR=0.476;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,14:33:99:0|1:153884092_G_GGT:248,0,777:153884092
chr4	153884096	.	TG	T	782.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DP=38;ExcessHet=3.9794;FS=2.163;MQ=60.00;MQRankSum=0.00;QD=12.42;ReadPosRankSum=-1.139e+00;SOR=0.435;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,22:38:99:1|0:153884092_G_GGT:791,0,600:153884092
chr4	153884098	.	TGTGTGTG	T	645.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DP=36;ExcessHet=3.9794;FS=2.167;MQ=60.00;MQRankSum=0.00;QD=11.12;ReadPosRankSum=-7.170e-01;SOR=0.443;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,17:36:99:692,0,601
chr4	153889462	rs2090383	C	T	403.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.91;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr4	153893354	rs11099864	G	A	423.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.18;SOR=4.977;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr4	153896358	rs3811833	C	T	26019.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.45;DB;DP=357;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=1.10;SOR=0.658;VQSLOD=6.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,355:357:99:10793,1056,0
chr4	153897770	rs3811832	G	A	13784.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.12;DB;DP=138;ExcessHet=3.0103;FS=6.657;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=-1.099e+00;SOR=1.321;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4931,415,0
chr4	153898132	rs10604335	CCT	C	870	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=4.615;VQSLOD=6.50;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	153898178	rs4696370	A	G	660.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.57;POSITIVE_TRAIN_SITE;QD=29.28;SOR=5.670;VQSLOD=5.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr4	153976787	rs6813595	C	G	555.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:236,0,101
chr4	154125435	rs28754692	T	C	269.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=1.38;SOR=1.022;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:21:180,0,21
chr4	154178697	rs12643843	A	G	1226.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.894;SOR=0.616;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1235,0,1164
chr4	154191226	rs41280463	G	A	31.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.52;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:40,0,30
chr4	154191281	rs2119163	T	C	177.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=0.876;SOR=0.446;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:186,0,101
chr4	154191710	rs1470104	G	A	675.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-1.490e-01;SOR=0.711;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,29:66:99:684,0,913
chr4	154216710	rs893805	G	A	11465.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.820e-01;DB;DP=303;ExcessHet=1.5490;FS=1.238;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=-6.590e-01;SOR=0.600;VQSLOD=6.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:160,143:303:99:3291,0,4048
chr4	154237294	rs41280467	G	C	218.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.125;SOR=0.473;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:227,0,292
chr4	154330064	rs10552163	GTA	G	217.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=1.76;SOR=1.445;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:53:53,0,123
chr4	154479430	rs6848033	T	C	2301.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DB;DP=48;ExcessHet=1.5490;FS=0.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=-1.030e-01;SOR=0.589;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:587,0,641
chr4	154512437	rs17279148	A	G	919.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.570e-01;DB;DP=33;ExcessHet=3.9794;FS=1.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=1.38;SOR=0.998;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,8:33:99:188,0,759
chr4	154513531	rs1371158	A	G	712.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.85;DB;DP=20;ExcessHet=3.9794;FS=6.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=0.695;SOR=2.930;VQSLOD=18.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:428,0,267
chr4	154513627	rs7669418	A	G	2050.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=77;ExcessHet=3.9794;FS=0.626;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=0.494;SOR=0.593;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,37:77:99:936,0,1007
chr4	154513722	rs7669741	C	T	2791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=95;ExcessHet=3.9794;FS=1.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=-2.670e-01;SOR=0.567;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,45:95:99:1161,0,1341
chr4	154513856	rs893628	G	C	2834.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=-1.970e-01;SOR=0.635;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,23:39:99:623,0,440
chr4	154513927	rs7670485	G	C	859.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=1.53;SOR=1.483;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:398,0,145
chr4	154514847	rs13109887	T	C	566.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=15;ExcessHet=3.9794;FS=1.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.69;ReadPosRankSum=-2.810e-01;SOR=1.519;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:228,0,210
chr4	154514918	rs17279217	T	C	1284.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=46;ExcessHet=3.9794;FS=3.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.90;ReadPosRankSum=1.55;SOR=1.185;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:698,0,549
chr4	154514965	rs17370297	T	C	1721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.556e+00;DB;DP=66;ExcessHet=3.9794;FS=1.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.810;SOR=0.864;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,35:66:99:833,0,780
chr4	154519658	rs13118469	A	G	1120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=16;ExcessHet=3.9794;FS=1.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=1.58;SOR=1.483;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,12:16:99:0|1:154519658_A_G:534,0,325:154519658
chr4	154519666	rs13118949	G	C	1246.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=0.741;SOR=0.929;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,13:16:99:0|1:154519658_A_G:534,0,339:154519658
chr4	154519679	rs13145743	T	C	1376.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=1.09;SOR=0.729;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,15:20:99:0|1:154519658_A_G:605,0,372:154519658
chr4	154542814	rs7663417	G	T	1415.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.790e+00;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.28;ReadPosRankSum=-1.043e+00;SOR=0.688;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:388,0,361
chr4	154543995	rs56395606	A	G	718.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.700e-02;DB;DP=56;ExcessHet=3.0103;FS=4.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-6.150e-01;SOR=0.250;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:727,0,859
chr4	154544267	rs2289319	G	A	1599.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-2.100e-02;SOR=1.609;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1233,87,0
chr4	154549060	rs35127259	C	T	123.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=3.258;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr4	154549084	rs28375206	C	G	160.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.93;SOR=3.258;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr4	154553693	rs11099892	G	A	674.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.166e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=0.386;SOR=0.428;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:301,24,0
chr4	154556798	rs2278576	C	G	1756.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.34;SOR=4.849;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:491,42,0
chr4	154557383	rs142471814	ATG	A	5005.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=2.242;VQSLOD=6.09;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1234,84,0
chr4	154557405	rs3214684	CT	C	4459.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.41;SOR=1.899;VQSLOD=5.72;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1274,135,0
chr4	154623914	rs141605367	TTG	T,TTGTGTG	838.36	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=58.25;QD=28.59;SOR=4.977;VQSLOD=5.14;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,2:4:43:121,82,75,43,0,94
chr4	154624656	rs3804099	T	C	2503.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=90;ExcessHet=3.9794;FS=1.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=-4.470e-01;SOR=0.562;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,53:90:99:1330,0,1009
chr4	154631543	rs2405432	A	T	13184.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.04;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.38;ReadPosRankSum=1.23;SOR=0.568;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,123:124:99:3585,361,0
chr4	154633580	rs33952548	GA	G	2774.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.476;DB;DP=22;ExcessHet=3.9794;FS=2.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=-1.570e+00;SOR=1.140;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,14:22:99:425,0,219
chr4	154641150	rs2579909	G	T	98.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=-1.645e+00;SOR=1.022;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:73:106,0,73
chr4	154641489	rs1439166	T	C	978.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490e-01;DB;DP=36;ExcessHet=3.9794;FS=1.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.190;SOR=0.941;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:536,0,493
chr4	154641578	rs373735038	ATG	A	545.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.74;ReadPosRankSum=-4.310e-01;SOR=1.179;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:68:68,0,190
chr4	154644250	rs1439167	C	T	451.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=5.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=2.17;SOR=3.477;VQSLOD=15.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,77
chr4	154644454	rs1456384	T	C	7520.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=0.865;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2138,218,0
chr4	154644807	rs2118861	A	C	270.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.9794;FS=4.393;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=0.524;SOR=2.833;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:77,0,31
chr4	154681264	rs111953285	A	AC	166.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=1.609;VQSLOD=6.66;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:154681264_A_AC:90,6,0:154681264
chr4	154681280	rs4696188	A	G	166.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=1.609;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:154681264_A_AC:90,6,0:154681264
chr4	154709480	rs3810765	G	A	7354.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=2.280;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2046,186,0
chr4	154709854	rs4643790	G	A	2159.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.891e+00;DB;DP=156;ExcessHet=3.0103;FS=3.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-1.650e-01;SOR=1.005;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:77,79:156:99:0|1:154709854_G_A:2168,0,2178:154709854
chr4	154709856	rs6535952	A	C	14959.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=1.901;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,154:154:99:1|1:154709854_G_A:6004,466,0:154709854
chr4	155156207	rs7655799	G	A	12167.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.86;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.47;ReadPosRankSum=1.67;SOR=0.655;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,144:146:99:4618,388,0
chr4	155161666	rs6535989	C	T	4625.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.430e-01;DB;DP=59;ExcessHet=3.0103;FS=2.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=1.35;SOR=1.046;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1847,177,0
chr4	155180652	.	CCA	C	1026.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.150e-01;DP=25;ExcessHet=3.9794;FS=6.697;MQ=60.00;MQRankSum=0.00;QD=12.68;ReadPosRankSum=-8.320e-01;SOR=1.710;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,3:25:26:26,0,654
chr4	155190818	rs7666541	A	G	147.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=0.967;SOR=0.941;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:26:79,0,26
chr4	155190927	rs11412936	T	TA	1329.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.858e+00;DB;DP=15;ExcessHet=6.9897;FS=2.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.46;ReadPosRankSum=-1.092e+00;SOR=0.436;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,10:15:99:293,0,108
chr4	155191278	rs4386583	G	C	181.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=1.29;SOR=0.551;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:81,0,34
chr4	155225784	rs70947158	AAAACAAAC	A,CAAACAAAC	1797.17	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.81;SOR=3.865;VQSLOD=4.57;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,5,5:10:99:378,185,294,201,0,227
chr4	155226421	rs12507663	C	A	1085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.710e-01;DB;DP=27;ExcessHet=3.9794;FS=1.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.623;SOR=1.001;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:370,0,454
chr4	155236778	rs1388085	C	G	1309.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=6.932;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr4	155241438	rs11935503	G	A	336.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.823e+00;DB;DP=18;ExcessHet=3.9794;FS=1.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.40;ReadPosRankSum=-3.960e-01;SOR=0.354;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:45:45,0,453
chr4	155241572	rs11935573	G	A	2306.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008e+00;DB;DP=92;ExcessHet=3.9794;FS=6.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.77;ReadPosRankSum=0.413;SOR=1.129;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,41:92:99:947,0,1425
chr4	155242383	rs62331873	C	T	1023.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.52;DB;DP=23;ExcessHet=3.9794;FS=3.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=1.31;SOR=1.501;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:501,0,181
chr4	155242505	rs62331874	G	T	187.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.76;ReadPosRankSum=1.28;SOR=1.609;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr4	155243573	rs13109747	C	T	10876.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=1.130;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3441,327,0
chr4	155243604	rs1352714	T	C	9318.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=1.420;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2827,267,0
chr4	155243811	rs1352713	T	G	466.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=5.136;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr4	155244401	rs140019361	TTTTG	T	4308.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.90;SOR=1.760;VQSLOD=5.48;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1638,112,0
chr4	155244475	rs12500437	G	T	2781.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=1.816;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:969,93,0
chr4	155244486	rs145036588	C	CA	209.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.800e-01;DB;DP=24;ExcessHet=3.9794;FS=2.370;MQ=60.00;MQRankSum=0.00;QD=5.36;ReadPosRankSum=0.00;SOR=0.420;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,9:24:99:133,0,241
chr4	155249118	rs2404704	C	T	1318.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=7.054;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr4	155249510	.	A	G	168.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e+00;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.94;ReadPosRankSum=-8.320e-01;SOR=0.836;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:177,0,203
chr4	155250915	rs993975	G	C	228.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=-5.360e-01;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:94:237,0,94
chr4	155251015	rs10517595	T	G	143.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.67;ReadPosRankSum=-9.670e-01;SOR=1.981;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr4	155252934	rs4696548	C	T	882.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=0.908;SOR=0.739;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,31:45:99:891,0,363
chr4	155256177	rs6858157	A	G	1847.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=93;ExcessHet=3.9794;FS=4.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=1.12;SOR=1.044;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,39:93:99:973,0,1352
chr4	155256205	rs6858712	G	A	7293.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DB;DP=81;ExcessHet=3.0103;FS=0.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=-1.042e+00;SOR=0.796;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2597,243,0
chr4	155264637	rs62331892	G	A	79.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.840;DB;DP=16;ExcessHet=3.0103;FS=2.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.95;ReadPosRankSum=0.485;SOR=1.609;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:88:88,0,321
chr4	155287317	rs10005849	G	C	458.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=34;ExcessHet=3.0103;FS=12.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=-9.840e-01;SOR=2.876;VQSLOD=12.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:467,0,448
chr4	155287535	rs10017772	T	C	650.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e-01;DB;DP=52;ExcessHet=3.0103;FS=7.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-1.740e-01;SOR=1.336;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:659,0,665
chr4	155294820	rs35699649	T	TC	450.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.19;ReadPosRankSum=1.04;SOR=2.584;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:372,30,0
chr4	155295076	rs11721758	A	G	543.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.364e+00;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.101;SOR=0.643;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:552,0,803
chr4	155305491	rs34927139	C	T	1927.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DB;DP=65;ExcessHet=3.9794;FS=7.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=1.80;SOR=0.274;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,35:65:99:804,0,845
chr4	155312411	rs62331900	G	A	4757.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DB;DP=136;ExcessHet=6.9897;FS=2.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.546;SOR=0.602;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,64:136:99:1490,0,1602
chr4	155407407	rs4346631	A	T	6331.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=1.078;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1828,165,0
chr4	155407569	rs12501998	T	C	6741.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.07;SOR=1.018;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1990,195,0
chr4	155407680	rs13151559	A	G	3549.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.588;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1123,108,0
chr4	155410276	rs34485270	CA	C	2244.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.098e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.14;ReadPosRankSum=0.811;SOR=0.755;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:32:96:977,96,0
chr4	155410407	rs9999285	C	G	2112.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.519;DB;DP=82;ExcessHet=3.9794;FS=6.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.80;ReadPosRankSum=-9.300e-02;SOR=0.385;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,36:82:99:881,0,1248
chr4	155410822	rs4696593	G	A	18850.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.354;DB;DP=230;ExcessHet=3.0103;FS=0.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.70;ReadPosRankSum=0.904;SOR=0.845;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,230:230:99:7393,687,0
chr4	155411065	rs7656522	T	C	39454.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=380;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=34.40;SOR=0.848;VQSLOD=4.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,380:380:99:12478,1139,0
chr4	155411104	rs6536016	A	C	38539.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=415;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=32.12;SOR=0.794;VQSLOD=4.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,415:415:99:12820,1245,0
chr4	155460459	rs12642770	T	C	744.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.497e+00;DB;DP=20;ExcessHet=3.9794;FS=3.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=0.565;SOR=2.303;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:194,0,435
chr4	155489852	rs33927322	CA	C	149.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.57;ReadPosRankSum=-2.530e-01;SOR=2.093;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:32:85,0,32
chr4	155505241	rs148317511	A	AGAAGACAGAGTGCTCCCATTCCCACTTC	533.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.990;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.39;ReadPosRankSum=-1.080e-01;SOR=0.836;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:282,0,1016
chr4	155507590	rs6050	T	C	7558.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.45;DB;DP=226;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=1.30;SOR=0.663;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,131:226:99:3715,0,2335
chr4	155508627	rs2070018	G	A	6138.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.092e+00;DB;DP=80;ExcessHet=3.0103;FS=2.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=1.25;SOR=0.994;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,45:80:99:1130,0,898
chr4	155510224	rs7656433	A	T	2484.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=2.211;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:751,72,0
chr4	155525276	rs2066865	G	A	276.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.308e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=1.26;SOR=0.693;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:90:90,0,320
chr4	155525695	rs2066864	G	A	97.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=-1.890e-01;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:57:106,0,57
chr4	155525970	rs1049636	G	A	9191.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292e+00;DB;DP=115;ExcessHet=3.0103;FS=1.899;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=0.952;SOR=0.553;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,64:115:99:1570,0,1279
chr4	155718171	rs57686041	A	AT	717.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.92;ReadPosRankSum=0.00;SOR=0.627;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:7:140,0,7
chr4	155719919	rs33918255	AT	A	1518.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.260;DB;DP=20;ExcessHet=3.0103;FS=1.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=0.471;SOR=1.117;VQSLOD=7.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,20:20:60:566,60,0
chr4	155720274	rs156502	T	C	5946.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.71;DB;DP=56;ExcessHet=3.0103;FS=0.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=0.220;SOR=0.632;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1841,168,0
chr4	155747891	rs34828322	CTTT	C,CTT	4278.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.414e+00;DB;DP=48;ExcessHet=3.0103;FS=9.671;MQ=59.74;MQRankSum=-8.600e-02;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.66;ReadPosRankSum=1.06;SOR=0.119;VQSLOD=0.317;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,23,12:48:99:1248,292,365,783,0,685
chr4	155748154	rs2042622	C	T	114.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=-1.097e+00;SOR=0.330;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:123,0,267
chr4	156135676	rs1047214	C	T	5906.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.128e+00;DB;DP=136;ExcessHet=1.5490;FS=1.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.81;ReadPosRankSum=0.072;SOR=0.603;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,74:136:99:1855,0,1698
chr4	156136027	rs2880415	C	T	7189.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.813e+00;DB;DP=170;ExcessHet=1.5490;FS=2.709;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=0.226;SOR=0.541;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,81:170:99:1751,0,2532
chr4	156271152	rs17311826	T	C	263.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.39;ReadPosRankSum=1.44;SOR=1.609;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:108,0,104
chr4	156271556	rs13123971	A	G	305.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.45;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,140
chr4	156273768	rs2305050	T	C	1983.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=39;ExcessHet=1.5490;FS=3.218;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=-1.242e+00;SOR=1.102;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,15:39:99:367,0,550
chr4	156274606	rs33994283	CATT	C	823.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.38;ReadPosRankSum=0.842;SOR=4.615;VQSLOD=3.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:22:165,0,22
chr4	156276096	rs3775249	G	A	1181.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=-9.670e-01;SOR=1.508;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,1:9:11:11,0,251
chr4	156276289	rs2341894	C	T	2981.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.312e+00;DB;DP=54;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.25;ReadPosRankSum=-6.860e-01;SOR=0.692;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:519,0,740
chr4	156276317	rs2880181	A	G	2440.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=-8.610e-01;SOR=0.892;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:438,0,451
chr4	156276742	rs34426198	ACT	A	1255.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.93;ReadPosRankSum=-1.973e+00;SOR=4.047;VQSLOD=3.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:99:327,0,103
chr4	156276788	rs6857158	G	T	1648.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.678e+00;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.43;ReadPosRankSum=1.00;SOR=1.112;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,15:23:99:376,0,239
chr4	156276841	rs6834126	T	C	2729.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.383e+00;DB;DP=53;ExcessHet=1.5490;FS=0.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=0.152;SOR=0.578;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:577,0,562
chr4	156283302	rs6829123	G	A	4607.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=69;ExcessHet=1.5490;FS=1.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-5.400e-02;SOR=0.859;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:946,0,688
chr4	156289900	rs3733390	C	T	1159.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810e+00;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-4.440e-01;SOR=0.734;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,45:105:99:1168,0,1730
chr4	156289917	rs3733391	G	A	797.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300e-01;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=-2.300e-01;SOR=0.788;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,35:88:99:806,0,1424
chr4	156631491	rs3796590	G	A	38.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.03;SOR=0.693;VQSLOD=16.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr4	156632391	rs11944673	A	G	9433.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.42;SOR=1.701;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2610,248,0
chr4	156643183	rs2306554	C	A	5705.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224e+00;DB;DP=212;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=1.30;SOR=0.663;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,102:212:99:2604,0,2854
chr4	156680340	rs1459845	G	T	3646.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.240e-01;DB;DP=93;ExcessHet=3.9794;FS=2.748;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.70;ReadPosRankSum=-3.810e-01;SOR=0.516;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,66:93:99:1701,0,577
chr4	156693711	rs4525927	G	C	203.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=-5.240e-01;SOR=0.859;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:36:140,0,36
chr4	156693994	rs116311691	A	G	546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.026;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.42;ReadPosRankSum=1.67;SOR=0.775;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,23:58:99:555,0,913
chr4	156706435	rs17033528	T	G	1419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=1.21;SOR=0.728;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,60:121:99:1428,0,1326
chr4	156706482	rs1459853	G	A	8147.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.313;DB;DP=109;ExcessHet=3.0103;FS=6.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.82;ReadPosRankSum=-5.120e-01;SOR=0.745;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3310,325,0
chr4	156711074	rs17033532	G	A	1280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=98;ExcessHet=3.0103;FS=4.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=-7.610e-01;SOR=1.167;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1289,0,1330
chr4	156721107	rs17033562	T	C	614.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.520e-01;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.442;SOR=0.703;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,26:54:99:623,0,719
chr4	156721198	rs2229202	C	T	1259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=45;ExcessHet=3.9794;FS=1.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=1.50;SOR=0.463;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:614,0,438
chr4	156724580	rs4234963	A	G	835.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.99;SOR=6.358;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:335,27,0
chr4	156725555	rs6536094	C	T	508.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.34;POSITIVE_TRAIN_SITE;QD=29.52;SOR=5.283;VQSLOD=6.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr4	156757789	rs113590442	G	GA	1040.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.446e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=0.311;SOR=0.490;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:314,33,0
chr4	156757818	rs1399046	A	C	1959.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.38;SOR=2.998;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:836,75,0
chr4	156784970	rs932081	C	T	3833.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=32.94;SOR=4.240;VQSLOD=4.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1024,78,0
chr4	156787214	rs1399044	A	G	3566.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=8.814;VQSLOD=25.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1277,87,0
chr4	156787340	rs6848883	G	A	8628.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=1.385;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3864,373,0
chr4	156826166	rs2137778	C	G	2818.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=3.489;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:792,60,0
chr4	156835631	rs6828277	T	C	472.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.72;SOR=1.765;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:489,42,0
chr4	156838535	rs77984239	T	G	2612.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=87;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.02;ReadPosRankSum=-1.742e+00;SOR=0.979;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,85:87:99:2629,212,0
chr4	156839084	rs13128945	C	T	1889.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.989;SOR=0.852;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:264,0,356
chr4	156839462	rs2292537	C	T	3217.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.473e+00;DB;DP=39;ExcessHet=3.9794;FS=1.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=-3.240e-01;SOR=0.456;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:664,0,590
chr4	156847230	rs1543108	A	G	2930.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.560e-01;DB;DP=60;ExcessHet=1.5490;FS=0.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=1.33;SOR=0.836;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,28:60:99:750,0,1830
chr4	156847237	rs10714400	AG	A	3373.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.970e-01;DB;DP=57;ExcessHet=1.5490;FS=0.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=0.479;SOR=0.846;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,28:57:99:1113,0,1767
chr4	156849353	rs11376603	C	CT	338.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.231;SOR=1.721;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:169,18,0
chr4	156850515	rs6832959	G	T	1086.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.973e+00;DB;DP=15;ExcessHet=3.0103;FS=4.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=1.08;SOR=0.180;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:455,45,0
chr4	156863252	rs13128318	T	C	110.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.35;SOR=2.833;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr4	156874528	rs7670442	A	C	328.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.99;SOR=2.093;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr4	156874681	rs7670813	A	G	166.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=13;ExcessHet=3.0103;FS=2.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.79;ReadPosRankSum=0.069;SOR=0.160;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:175,0,209
chr4	156874833	rs2292538	G	A	1351.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=0.028;SOR=0.752;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,26:42:99:0|1:156874833_G_A:972,0,368:156874833
chr4	156874849	rs7671674	G	T	535.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DB;DP=39;ExcessHet=3.0103;FS=4.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-1.140e-01;SOR=0.353;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,23:39:99:0|1:156874833_G_A:544,0,806:156874833
chr4	157555832	rs1055400	G	A	803.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.695;DB;DP=23;ExcessHet=3.9794;FS=3.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=1.11;SOR=1.609;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:304,0,386
chr4	157557726	rs11943855	A	G	7563.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=84;ExcessHet=3.0103;FS=3.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=1.12;SOR=0.479;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2637,252,0
chr4	157563266	rs7658059	A	G	320.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=6.9897;FS=2.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.91;ReadPosRankSum=-3.190e-01;SOR=1.473;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:63:63,0,198
chr4	157563501	rs62331461	G	T	1040.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.026e+00;DB;DP=76;ExcessHet=3.0103;FS=3.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.577;SOR=0.396;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,43:76:99:1049,0,840
chr4	157684515	.	CAAA	C,CAA	849.01	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.640;DP=27;ExcessHet=3.9794;FS=2.239;MQ=59.67;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=0.318;SOR=0.469;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,5,11:27:99:370,160,373,114,0,125
chr4	158005913	rs6823927	C	T	1391.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=101;ExcessHet=3.0103;FS=1.714;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-2.850e-01;SOR=0.977;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,49:101:99:1400,0,1272
chr4	158041591	rs11932115	G	A	429.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=1.32;SOR=0.859;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:160,0,181
chr4	158043559	rs41280501	C	T	1490.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.490e-01;DB;DP=70;ExcessHet=3.9794;FS=1.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.49;ReadPosRankSum=0.961;SOR=0.575;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,26:70:99:611,0,1274
chr4	158065038	rs12507409	T	C	7196.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=0.830;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2002,201,0
chr4	158073913	rs1801154	T	C	726.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003e+00;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-8.700e-02;SOR=0.749;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,32:74:99:735,0,1090
chr4	158142610	rs7675800	G	A	674.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.57;SOR=5.784;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr4	158143092	rs13138842	A	G	985.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.80;ReadPosRankSum=1.11;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:263,21,0
chr4	158238607	rs41279337	C	T	114.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e+00;DB;DP=12;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=-3.250e-01;SOR=0.048;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:123,0,299
chr4	158238830	rs4302506	T	C	4198.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=82;ExcessHet=3.9794;FS=3.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.536;SOR=0.890;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2284,245,0
chr4	158242540	rs4475186	G	A	2169.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.120e+00;DB;DP=25;ExcessHet=3.9794;FS=1.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=1.36;SOR=0.473;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:903,75,0
chr4	158281371	rs4438801	C	G	210.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=0.00;SOR=2.584;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:23:219,0,23
chr4	159076679	rs6830475	C	A	553.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=1.68;SOR=0.950;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:316,0,290
chr4	159076826	rs6830702	C	T	5073.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=79;ExcessHet=3.9794;FS=0.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=1.61;SOR=0.763;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1071,0,930
chr4	159092633	rs2881373	A	G	1578.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.441;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=-5.070e-01;SOR=2.262;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:271,0,240
chr4	159138826	rs2225238	T	G	467.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.59;SOR=5.136;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr4	159140821	rs7678486	A	G	669.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=0.180;SOR=1.382;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:55:55,0,185
chr4	159442840	rs146007330	T	TTGTGTGTG	741.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.04;ReadPosRankSum=0.674;SOR=1.863;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr4	159568383	rs13111939	A	G	3328.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.890e-01;DB;DP=26;ExcessHet=3.0103;FS=1.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.81;ReadPosRankSum=-7.980e-01;SOR=1.004;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:912,77,0
chr4	159569477	rs13146852	T	C	104.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=2.833;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr4	159601676	rs11559290	C	T	9363.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.012;DB;DP=138;ExcessHet=3.0103;FS=1.042;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=1.39;SOR=0.616;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,138:138:99:4109,413,0
chr4	159636305	rs5863331	AG	A	2670.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.963;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.00;ReadPosRankSum=-1.599e+00;SOR=0.863;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,20:22:5:478,5,0
chr4	159640565	rs7666472	G	C	3201.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.35;SOR=4.725;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1059,78,0
chr4	159690622	rs55960593	C	T	1567.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=0.831;SOR=0.604;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,28:50:99:859,0,613
chr4	159690640	rs59971723	C	A	1170.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.620e+00;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=1.24;SOR=0.638;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:638,0,629
chr4	159812399	rs11726311	C	A	268.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.36;ReadPosRankSum=1.28;SOR=0.446;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:22:142,0,22
chr4	159858736	rs11737459	T	A	5175.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=75;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=1.59;SOR=0.683;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1009,0,849
chr4	159881328	rs978297	T	C	274.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.14;ReadPosRankSum=0.189;SOR=0.941;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,100
chr4	159881479	rs9784569	T	C	1154.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;DB;DP=51;ExcessHet=3.9794;FS=0.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-1.480e-01;SOR=0.560;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:584,0,676
chr4	159894045	rs661183	A	G	229.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.45;SOR=3.912;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr4	159894250	rs619128	C	T	6466.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.96;SOR=1.742;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1979,174,0
chr4	159894305	rs662473	T	C	8524.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.78;ReadPosRankSum=0.195;SOR=0.998;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,80:82:99:2396,196,0
chr4	160025679	rs579395	G	A,GA	566.33	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.07;QD=21.78;SOR=0.544;VQSLOD=3.46;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,4,4:8:74:381,111,85,101,0,74
chr4	160025703	rs11726376	A	T	771.35	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=58.33;QD=30.70;SOR=5.994;VQSLOD=5.65;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:160025678_G_GA:405,27,0:160025678
chr4	160025705	rs11726377	A	T	812.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=58.33;QD=30.51;SOR=5.994;VQSLOD=4.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:160025678_G_GA:405,27,0:160025678
chr4	160107918	rs10014197	T	C	5595.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.76;SOR=2.504;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2063,187,0
chr4	160114277	rs6834634	G	C	4482.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.662e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.96;ReadPosRankSum=1.14;SOR=0.904;VQSLOD=6.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1320,117,0
chr4	160162315	rs11944449	T	C	2973.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=1.821;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:693,63,0
chr4	160203996	rs6847780	C	T	1295.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.042e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.40;ReadPosRankSum=0.429;SOR=3.611;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr4	160225336	rs2348168	G	T	1038.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.77;SOR=6.593;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr4	160225430	rs13103075	T	A	2377.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.266e+00;DB;DP=37;ExcessHet=3.9794;FS=0.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=0.021;SOR=0.864;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1198,111,0
chr4	160251417	rs139978349	A	ATGTGTGTGTGTGTGTGTGTG	900.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.11;SOR=0.976;VQSLOD=4.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:24:360,24,0
chr4	160251449	rs55734414	A	G	361.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=5;ExcessHet=1.5490;FS=2.158;MQ=60.00;MQRankSum=0.00;QD=24.11;ReadPosRankSum=0.842;SOR=1.609;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:27:395,27,0
chr4	160251451	rs56024370	A	G	352.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=1.5490;FS=2.158;MQ=60.00;MQRankSum=0.00;QD=23.49;ReadPosRankSum=0.728;SOR=1.609;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:27:394,27,0
chr4	160260209	rs13127789	G	T	3571.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.959e+00;DB;DP=39;ExcessHet=3.0103;FS=1.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=-1.480e-01;SOR=0.992;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1319,117,0
chr4	160260396	rs61748171	G	A	1300.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=112;ExcessHet=3.0103;FS=2.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=-7.640e-01;SOR=0.495;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,52:112:99:1309,0,1486
chr4	160264026	rs3749465	T	A	746.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-2.000e-01;SOR=2.066;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:457,33,0
chr4	160271268	rs11320537	GT	G	2851.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.190e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=0.238;SOR=0.629;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,40:42:71:1074,71,0
chr4	160274180	rs10034898	G	C	2502.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=5.353;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:618,45,0
chr4	160275116	rs145873578	G	A	592.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=55;ExcessHet=3.0103;FS=3.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.77;ReadPosRankSum=0.103;SOR=1.246;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,22:55:99:601,0,893
chr4	160277276	rs1135004	C	T	4279.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.490e-01;DB;DP=61;ExcessHet=3.9794;FS=7.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=0.240;SOR=0.944;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2022,183,0
chr4	162307060	rs17040984	G	T	9127.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.534e+00;DB;DP=95;ExcessHet=3.0103;FS=0.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.74;ReadPosRankSum=1.08;SOR=0.788;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3073,285,0
chr4	162307678	rs76223014	G	A	394.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.140e-01;DB;DP=36;ExcessHet=3.0103;FS=1.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-8.190e-01;SOR=0.970;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:403,0,600
chr4	162307730	rs13124779	A	C	2001.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.78;ReadPosRankSum=-5.430e-01;SOR=0.872;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:586,54,0
chr4	162380213	rs74436859	C	CT	427.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.27;ReadPosRankSum=0.842;SOR=0.976;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:60:216,0,60
chr4	162421109	rs57337277	G	A	1129.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=48;ExcessHet=3.9794;FS=0.938;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=-3.310e-01;SOR=0.903;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:781,0,534
chr4	162431434	rs62324275	A	G	210.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.10;ReadPosRankSum=0.00;SOR=0.859;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:72:72,0,110
chr4	162459299	rs4691769	T	C	8958.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=1.381;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2257,216,0
chr4	162680378	rs4691794	T	A	166.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,144
chr4	162841814	rs5863499	T	TA	3724.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.630e-01;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.01;ReadPosRankSum=1.73;SOR=1.750;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1198,104,0
chr4	162954926	rs60202022	A	G	2465.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.77;SOR=2.147;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2482,219,0
chr4	164048199	rs4691895	G	C	4168.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;DB;DP=48;ExcessHet=3.0103;FS=1.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=1.26;SOR=0.887;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,16:48:99:362,0,863
chr4	164066710	rs7693533	T	C	1578.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=17;ExcessHet=3.0103;FS=3.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=1.51;SOR=1.590;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:132,0,288
chr4	164067228	rs1479089	T	C	242.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=3.912;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr4	164085425	rs4691896	T	C	1995.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=24;ExcessHet=3.0103;FS=2.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.26;ReadPosRankSum=1.93;SOR=1.237;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:223,0,393
chr4	164087954	rs936562	A	T	13975.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.324e+00;DB;DP=189;ExcessHet=3.0103;FS=2.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=0.879;SOR=0.986;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,97:189:99:2482,0,2430
chr4	164393117	rs11735477	T	A	7249.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DB;DP=120;ExcessHet=1.5490;FS=1.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=-9.690e-01;SOR=0.767;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,70:120:99:1789,0,1117
chr4	164466970	rs11726828	C	T	3287.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307e+00;DB;DP=35;ExcessHet=3.9794;FS=0.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.18;ReadPosRankSum=0.320;SOR=0.533;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:613,0,400
chr4	164477252	rs33943246	A	AT	885.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=15;ExcessHet=3.9794;FS=2.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=1.77;SOR=1.206;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,4:15:71:71,0,285
chr4	164507104	rs7435076	G	T	1296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=30;ExcessHet=6.9897;FS=3.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-4.300e-02;SOR=1.292;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:227,0,485
chr4	164533242	rs907432	C	A	894.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.15;ReadPosRankSum=0.00;SOR=4.892;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr4	164533316	rs907431	A	G	2654.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=31;ExcessHet=3.0103;FS=3.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.52;ReadPosRankSum=0.667;SOR=0.327;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1122,93,0
chr4	164621883	rs9308064	T	C	576.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=23;ExcessHet=3.9794;FS=1.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.60;SOR=1.139;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:269,0,275
chr4	165111052	rs62347975	C	T	3724.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=57.43;POSITIVE_TRAIN_SITE;QD=31.04;SOR=0.910;VQSLOD=3.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1507,143,0
chr4	165111111	rs17476188	C	T	591.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=65;ExcessHet=3.0103;FS=1.005;MQ=59.47;MQRankSum=0.019;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-1.390e-01;SOR=0.544;VQSLOD=1.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,22:65:99:600,0,1237
chr4	165118652	rs2288675	C	T	4740.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.32;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.61;ReadPosRankSum=-7.790e-01;SOR=0.866;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2330,222,0
chr4	165118796	rs2288674	G	A	2628.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.28;SOR=1.003;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:979,90,0
chr4	165195550	rs148817409	TAGTC	T	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.536;DB;DP=21;ExcessHet=3.0103;FS=1.808;MQ=57.60;MQRankSum=-1.470e+00;QD=26.58;ReadPosRankSum=-6.350e-01;SOR=0.830;VQSLOD=0.427;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,14:21:99:567,0,386
chr4	165876251	.	CAA	C	149.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=5;ExcessHet=3.9794;FS=4.560;MQ=59.24;MQRankSum=0.00;QD=8.82;ReadPosRankSum=0.00;SOR=1.535;VQSLOD=5.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:49:49,0,58
chr4	165878609	rs3196673	T	A	2548.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.72;SOR=1.965;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1170,105,0
chr4	165891214	rs201160598	T	C	1703.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=102;ExcessHet=3.9794;FS=3.705;MQ=40.52;MQRankSum=-1.170e-01;QD=8.00;ReadPosRankSum=1.05;SOR=1.022;VQSLOD=-4.695e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,35:102:99:814,0,1737
chr4	165891229	.	C	T	2198.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.440e-01;DP=91;ExcessHet=3.9794;FS=5.207;MQ=39.62;MQRankSum=0.260;QD=11.75;ReadPosRankSum=-2.160e-01;SOR=1.113;VQSLOD=-4.685e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,33:91:99:0|1:165891229_C_T:1166,0,2570:165891229
chr4	165891236	.	A	G	2066.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DP=88;ExcessHet=3.9794;FS=4.419;MQ=39.24;MQRankSum=0.570;QD=11.81;ReadPosRankSum=-1.400e-02;SOR=1.084;VQSLOD=-5.043e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,30:88:99:0|1:165891229_C_T:1104,0,2584:165891229
chr4	165891278	.	C	CA	802.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.430e-01;DP=42;ExcessHet=3.9794;FS=0.000;MQ=33.26;MQRankSum=0.746;QD=9.12;ReadPosRankSum=-6.570e-01;SOR=0.793;VQSLOD=0.403;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,10:42:99:0|1:165891270_T_C:324,0,1729:165891270
chr4	166006743	rs372244546	T	C	1325.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=91;ExcessHet=3.0103;FS=0.784;MQ=60.00;MQRankSum=0.00;QD=14.56;ReadPosRankSum=0.602;SOR=0.798;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,52:91:99:1334,0,977
chr4	166009307	rs4538438	T	C	196.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=3.611;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	166021585	rs4254727	T	C	486.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.08;SOR=2.833;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	166021811	rs6536890	G	C	558.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=55;ExcessHet=3.0103;FS=2.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=-1.355e+00;SOR=1.136;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,19:55:99:567,0,971
chr4	166023936	.	CTT	C	153.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=0.524;SOR=1.802;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:45:117,0,45
chr4	166023969	rs6536891	A	C	1373.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.60;SOR=5.728;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:432,33,0
chr4	166145153	rs377018625	G	A	160.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.348e+00;DB;DP=31;ExcessHet=3.9794;FS=3.570;MQ=55.20;MQRankSum=-4.251e+00;NEGATIVE_TRAIN_SITE;QD=2.54;ReadPosRankSum=-1.477e+00;SOR=0.201;VQSLOD=-3.526e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,6:31:87:87,0,769
chr4	166149905	.	C	G	133.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DP=14;ExcessHet=3.9794;FS=2.599;MQ=56.96;MQRankSum=-2.922e+00;NEGATIVE_TRAIN_SITE;QD=4.29;ReadPosRankSum=0.822;SOR=1.532;VQSLOD=-2.841e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,2:14:48:0|1:166149905_C_G:48,0,725:166149905
chr4	166149915	.	G	A	137.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DP=16;ExcessHet=3.9794;FS=0.000;MQ=55.15;MQRankSum=-3.362e+00;NEGATIVE_TRAIN_SITE;QD=3.43;ReadPosRankSum=-1.350e-01;SOR=0.903;VQSLOD=-3.938e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,3:16:67:0|1:166149905_C_G:67,0,756:166149905
chr4	166150086	rs72699582	A	G	975.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.190e-01;DB;DP=41;ExcessHet=3.9794;FS=3.898;MQ=53.06;MQRankSum=-4.986e+00;NEGATIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-6.500e-02;SOR=0.399;VQSLOD=-3.131e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:397,0,490
chr4	166150146	.	G	A	285.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.504;DP=16;ExcessHet=3.9794;FS=5.297;MQ=53.49;MQRankSum=-3.763e+00;NEGATIVE_TRAIN_SITE;QD=7.92;ReadPosRankSum=-1.820e-01;SOR=2.546;VQSLOD=-3.148e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:89:89,0,354
chr4	166226581	rs141950136	C	T	84.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-1.006e+00;SOR=0.495;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:93:93,0,123
chr4	166231528	rs72701614	A	G	101.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:110,0,26
chr4	166242523	rs145848491	G	A	175.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.790e-01;DB;DP=29;ExcessHet=3.0103;FS=1.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.04;ReadPosRankSum=0.920;SOR=0.758;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,9:29:99:184,0,524
chr4	166258905	rs72701627	G	A	1105.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.553;SOR=0.730;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:438,0,499
chr4	166259161	rs12501541	C	T	588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.039;DB;DP=23;ExcessHet=3.9794;FS=5.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.310;SOR=0.180;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:302,0,294
chr4	166261589	rs7679322	A	G	1668.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=56;ExcessHet=3.9794;FS=1.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-1.180e-01;SOR=0.875;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,24:56:99:699,0,913
chr4	166261609	rs7679808	G	T	1249.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.184e+00;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=0.869;SOR=0.704;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,16:41:99:424,0,770
chr4	166262695	rs138929187	G	GA	233.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=1.11;SOR=1.270;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:58:140,0,58
chr4	166262741	rs72701629	C	A	361.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.706;SOR=1.179;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:173,0,164
chr4	166262864	rs72701630	G	A	1833.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=51;ExcessHet=3.9794;FS=4.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=0.925;SOR=1.138;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:672,0,781
chr4	166263047	rs17585739	G	A	1479.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=63;ExcessHet=3.9794;FS=3.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=0.234;SOR=1.033;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,32:63:99:776,0,813
chr4	166307262	rs11100610	T	C	341.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.92;SOR=4.615;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr4	166403574	rs2289230	A	G	2548.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.273e+00;DB;DP=47;ExcessHet=6.9897;FS=2.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=0.571;SOR=0.508;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,32:47:99:844,0,409
chr4	166405584	rs4690821	C	T	2784.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DB;DP=212;ExcessHet=3.0103;FS=1.072;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-5.790e-01;SOR=0.810;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,115:212:99:2793,0,2288
chr4	166405800	rs2304592	T	C	910.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DB;DP=47;ExcessHet=3.0103;FS=8.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=0.449;SOR=0.047;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,29:47:99:919,0,608
chr4	166408517	rs2276931	T	C	1327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.734e+00;DB;DP=86;ExcessHet=3.0103;FS=0.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.236;SOR=0.862;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,50:86:99:1336,0,944
chr4	166408782	rs3822062	T	G	2195.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=53;ExcessHet=6.9897;FS=0.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-7.150e-01;SOR=0.622;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:642,0,771
chr4	166408910	rs11734732	G	T	151.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.245;SOR=0.892;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:160,0,358
chr4	166416643	rs7692951	A	G	109.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.380e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-7.230e-01;SOR=0.283;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:118,0,220
chr4	166910815	.	A	AT	330.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DP=13;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.69;ReadPosRankSum=0.904;SOR=0.650;VQSLOD=7.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,10:13:21:206,0,21
chr4	166915853	rs4691229	G	A	138.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.65;ReadPosRankSum=-3.190e-01;SOR=0.693;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr4	166981408	rs10651825	T	TA	616.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.010e-01;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=2.51;SOR=0.495;VQSLOD=6.53;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:4,6:10:60:111,0,60
chr4	167012137	rs35280935	C	CAT	291.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=3.912;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:9:126,9,0
chr4	167012241	rs377180243	GTTT	GTT,G	3320.69	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.85;SOR=3.136;VQSLOD=5.64;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,7,10:17:99:849,413,358,271,0,217
chr4	167012250	rs33986267	T	A,TAA	3738.69	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.63;SOR=3.030;VQSLOD=4.80;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,8,13:21:99:910,419,358,277,0,217
chr4	167012381	rs2654492	G	A	9350.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=0.817;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3114,332,0
chr4	167012480	rs2646914	T	C	5938.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=2.024;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1726,147,0
chr4	167012506	rs2254420	A	G	4064.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.48;SOR=2.938;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1140,90,0
chr4	167012543	rs2654493	T	C	2866.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.77;SOR=6.214;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:693,51,0
chr4	167012574	rs17505943	T	C	392.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=1.07;SOR=0.495;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:56:56,0,194
chr4	167020324	rs10018177	C	T	608.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=1.47;SOR=2.948;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:479,36,0
chr4	167656073	rs1057377	C	T	694.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=15;ExcessHet=1.5490;FS=2.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=0.00;SOR=1.893;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:576,45,0
chr4	167658880	rs7675734	G	A	3018.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.35;SOR=8.662;VQSLOD=24.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:644,48,0
chr4	167663375	rs141328456	GTCTA	G	250.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.86;SOR=1.402;VQSLOD=4.27;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:267,18,0
chr4	167932327	rs2558141	T	C	4179.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.683;DB;DP=46;ExcessHet=3.0103;FS=2.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=1.45;SOR=1.108;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1472,138,0
chr4	168155178	rs11557043	A	G	3820.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=315;ExcessHet=3.0103;FS=6.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-4.990e-01;SOR=0.444;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:159,156:315:99:3829,0,3923
chr4	169049435	.	CA	C	727.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.800e-02;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.99;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:49:49,0,153
chr4	169086540	.	CA	C	1495.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=0.345;SOR=0.627;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:18:99:114,0,173
chr4	169190129	rs33910888	CA	C	1315.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.630e-01;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-1.120e-01;SOR=0.648;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,3:19:23:23,0,350
chr4	169197063	rs369477323	TA	T	129.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.84;ReadPosRankSum=-2.720e-01;SOR=0.446;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:31:31,0,80
chr4	169279092	rs496945	C	T	563.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=-1.036e+00;SOR=2.712;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:247,18,0
chr4	169279170	rs497151	A	G	1906.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.184;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.26;ReadPosRankSum=-8.890e-01;SOR=0.566;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:828,60,0
chr4	169281998	rs2634929	A	G	197.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=3.611;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:128,9,0
chr4	169282112	rs2684346	C	T	684.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.398;DB;DP=7;ExcessHet=3.0103;FS=5.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=1.36;SOR=2.494;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:209,21,0
chr4	169282232	rs2684347	G	A	2869.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.187;DB;DP=32;ExcessHet=3.0103;FS=2.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=-4.060e-01;SOR=0.977;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:968,96,0
chr4	169282355	rs2684348	T	C	3223.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=39;ExcessHet=3.0103;FS=6.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-2.023e+00;SOR=0.885;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1188,117,0
chr4	169292759	rs6829368	T	C	2744.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.582;DB;DP=35;ExcessHet=3.0103;FS=2.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.18;ReadPosRankSum=-8.520e-01;SOR=1.075;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1112,105,0
chr4	169293123	rs11724207	C	G	462.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=-9.670e-01;SOR=2.303;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:280,21,0
chr4	169294576	rs12507515	T	A	304.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-1.383e+00;SOR=1.179;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:168,15,0
chr4	169296370	rs147690806	G	T	99.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:108,0,146
chr4	169296802	rs1489227	C	T	1235.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.633e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.43;ReadPosRankSum=-1.224e+00;SOR=1.755;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:375,33,0
chr4	169299528	rs13110927	T	C	3861.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=1.47;SOR=0.717;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,21:45:99:537,0,581
chr4	169299676	rs10517990	T	G	5170.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.791e+00;DB;DP=68;ExcessHet=3.0103;FS=0.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.98;ReadPosRankSum=0.040;SOR=0.549;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2000,204,0
chr4	169300245	rs13130573	G	C	665.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=5.670;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr4	169301059	rs1489232	T	C	843.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=3.160;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:229,18,0
chr4	169305649	rs902004	A	G	381.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.45;SOR=4.615;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr4	169306106	rs902003	A	C	1478.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.08;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=1.55;SOR=2.352;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:481,33,0
chr4	169311790	rs34009039	G	GT	490.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.26;SOR=5.892;VQSLOD=5.56;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:112,12,0
chr4	169312801	rs6840397	A	G	2920.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.940e-01;DB;DP=81;ExcessHet=3.0103;FS=8.132;MQ=59.68;MQRankSum=-4.200e-01;NEGATIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.358;SOR=1.752;VQSLOD=-1.381e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:5,58:81:74:1084,74,0
chr4	169315571	rs11337868	TA	T	2339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.44;SOR=4.277;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:490,42,0
chr4	169315760	rs3749499	C	A	6471.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.82;ReadPosRankSum=-1.354e+00;SOR=0.523;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,63:64:99:1819,180,0
chr4	169317081	rs1826028	C	A	1975.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=1.11;SOR=0.807;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:863,81,0
chr4	169317279	rs3857035	C	T	982.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=8;ExcessHet=3.0103;FS=13.034;MQ=59.95;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=27.30;ReadPosRankSum=2.03;SOR=3.337;VQSLOD=-1.934e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:169317279_C_T:283,24,0:169317279
chr4	169317284	rs5863929	T	TA	883.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=6;ExcessHet=3.0103;FS=12.793;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=1.50;SOR=3.967;VQSLOD=0.782;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:21:1|1:169317279_C_T:247,21,0:169317279
chr4	169322284	rs11940436	G	A	1436.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.72;SOR=7.223;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:408,30,0
chr4	169322338	rs11728183	T	C	599.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=5.549;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr4	169325282	rs59361424	T	TA	411.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=28;ExcessHet=3.9794;FS=1.186;MQ=60.00;MQRankSum=0.00;QD=8.06;ReadPosRankSum=0.323;SOR=0.976;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,15:28:99:298,0,256
chr4	169327191	rs3762856	C	T	1186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=31;ExcessHet=3.9794;FS=6.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.536;SOR=1.508;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:437,0,408
chr4	169336662	rs4692661	T	C	4618.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.23;SOR=0.797;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1075,99,0
chr4	169340639	rs1021318	C	A	1721.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.167e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.75;ReadPosRankSum=1.31;SOR=0.768;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:287,0,304
chr4	169341435	rs2130145	A	G	8012.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.46;SOR=0.992;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2219,234,0
chr4	169341608	rs141226900	TACACATACACACACACACAC	T	1573.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=24;ExcessHet=3.9794;FS=3.105;MQ=60.00;MQRankSum=0.00;QD=24.21;ReadPosRankSum=-1.654e+00;SOR=1.371;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,11:24:99:403,0,472
chr4	169341614	.	TACACACACACACAC	*,TACAC	634.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.230e-01;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.74;SOR=2.551;VQSLOD=4.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,11,6:22:99:718,282,291,436,0,410
chr4	169351919	rs4692931	C	T	396.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=4;ExcessHet=3.9794;FS=3.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=-3.660e-01;SOR=2.147;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr4	169362297	rs12504779	C	G	61.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.57;SOR=2.303;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr4	169362557	rs13151700	C	G	3505.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=50;ExcessHet=3.9794;FS=1.020;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.625;SOR=0.618;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1640,150,0
chr4	169369820	rs2712113	T	A	2408.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.310e-01;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=0.846;SOR=0.652;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:926,87,0
chr4	169369853	rs2712114	A	T	3131.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275e+00;DB;DP=37;ExcessHet=3.0103;FS=0.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.66;ReadPosRankSum=-1.463e+00;SOR=0.839;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1214,111,0
chr4	169369920	rs12507582	C	T	2765.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.125e+00;DB;DP=48;ExcessHet=3.9794;FS=5.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=1.89;SOR=0.774;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1456,143,0
chr4	169374487	rs2634953	A	G	5935.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=76;ExcessHet=3.0103;FS=0.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.37;ReadPosRankSum=-2.080e-01;SOR=0.774;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2278,228,0
chr4	169376962	rs2712142	C	T	172.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=-5.980e-01;SOR=1.179;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr4	169382663	rs1027123	A	G	289.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.40;SOR=4.174;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr4	169382822	rs5863935	A	AC	2227.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=35;ExcessHet=3.9794;FS=4.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=2.45;SOR=0.260;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1354,105,0
chr4	169393179	rs12505232	T	G	810.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.84;ReadPosRankSum=1.01;SOR=1.255;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:288,21,0
chr4	169393595	rs13149639	A	G	6931.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.850;DB;DP=87;ExcessHet=3.0103;FS=5.793;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=0.636;SOR=0.535;VQSLOD=6.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2651,261,0
chr4	169393972	rs113626526	G	GA	3480.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.330e-01;DB;DP=31;ExcessHet=3.0103;FS=1.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.57;ReadPosRankSum=-3.800e-02;SOR=0.983;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:961,93,0
chr4	169799448	rs62333013	A	G	851.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=55;ExcessHet=3.0103;FS=3.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=1.17;SOR=0.339;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:860,0,500
chr4	169812313	rs6827082	T	C	1528.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=29;ExcessHet=6.9897;FS=3.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=1.29;SOR=1.069;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:456,0,395
chr4	169816105	rs10020879	A	T	1007.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.50;ReadPosRankSum=-6.010e-01;SOR=4.047;VQSLOD=14.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:179,0,104
chr4	169816146	rs10030960	G	A	279.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=0.524;SOR=0.976;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:169816146_G_A:78,0,139:169816146
chr4	169816148	rs10009390	C	T	495.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=1.38;SOR=2.985;VQSLOD=19.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:78:0|1:169816146_G_A:78,0,139:169816146
chr4	169835048	rs1532651	C	G	1899.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031e+00;DB;DP=33;ExcessHet=6.9897;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.392;SOR=0.908;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,23:33:99:597,0,255
chr4	169842976	rs17615157	T	C	151.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-1.465e+00;SOR=0.307;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:160,0,126
chr4	169846255	rs3733656	T	C	2285.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=41;ExcessHet=6.9897;FS=6.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-9.290e-01;SOR=1.046;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:528,0,609
chr4	169846359	rs66895777	GCT	G	4681.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DB;DP=76;ExcessHet=6.9897;FS=0.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=-1.700e-02;SOR=0.765;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,39:76:99:1310,0,1220
chr4	169847646	rs35375934	TA	T	1356.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.150e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=-1.189e+00;SOR=3.690;VQSLOD=4.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:134,0,162
chr4	169911112	.	C	CA	133.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.25;ReadPosRankSum=1.38;SOR=0.836;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:38:40,0,38
chr4	169911596	rs11727290	A	T	57.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.54;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,1:2:32:63,0,32
chr4	169927171	rs72704286	C	T	166.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=-1.611e+00;SOR=1.179;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:175,0,113
chr4	169928842	rs2877380	G	T	2364.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DB;DP=45;ExcessHet=6.9897;FS=6.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.343;SOR=1.139;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:575,0,508
chr4	169930210	rs34403282	CA	C	369.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.497;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.31;ReadPosRankSum=0.936;SOR=1.002;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:9:61:61,0,62
chr4	169931268	rs28371817	G	A	8420.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.455e+00;DB;DP=118;ExcessHet=3.9794;FS=0.820;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=3.07;SOR=0.630;VQSLOD=21.96;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:50,68:118:99:0|1:169931268_G_A:2655,0,1843:169931268
chr4	169931274	rs2279038	G	A	2585.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774e+00;DB;DP=107;ExcessHet=3.0103;FS=3.600;MQ=60.00;MQRankSum=0.00;QD=24.16;ReadPosRankSum=2.31;SOR=0.494;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,65:107:99:0|1:169931268_G_A:2594,0,1724:169931268
chr4	169931288	rs2279039	T	C	5782.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=96;ExcessHet=6.9897;FS=0.920;MQ=60.00;MQRankSum=0.00;QD=19.94;ReadPosRankSum=-7.940e-01;SOR=0.634;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,62:96:99:0|1:169931268_G_A:2522,0,1352:169931268
chr4	169931326	rs67305871	CA	C	1415.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DB;DP=61;ExcessHet=6.9897;FS=0.736;MQ=59.88;MQRankSum=0.00;QD=11.51;ReadPosRankSum=0.777;SOR=0.795;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,29:61:99:677,0,344
chr4	170017508	rs2706747	T	C	949.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.352e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=-8.930e-01;SOR=3.407;VQSLOD=18.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:238,18,0
chr4	170017860	rs1471172	G	A	3761.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=50;ExcessHet=3.9794;FS=0.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.75;ReadPosRankSum=1.10;SOR=0.758;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1672,150,0
chr4	170038575	rs4074347	A	T	934.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=0.988;SOR=0.954;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,7:14:99:0|1:170038575_A_T:309,0,510:170038575
chr4	170038576	rs4074346	A	T	934.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.060e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=1.14;SOR=1.005;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,8:15:99:0|1:170038575_A_T:309,0,510:170038575
chr4	170190519	rs3072487	T	TCA	3060.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.550e-01;DB;DP=23;ExcessHet=3.0103;FS=5.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=1.08;SOR=0.237;VQSLOD=6.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1021,69,0
chr4	170315496	rs4692721	C	T	3424.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.95;SOR=3.080;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:718,63,0
chr4	170346090	rs4692723	C	T	853.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.15;ReadPosRankSum=1.61;SOR=4.174;VQSLOD=14.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr4	170354476	rs13151656	G	C	167.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=1.329;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr4	170354836	rs7680152	C	T	8181.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.76;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=1.71;SOR=0.736;VQSLOD=6.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2631,243,0
chr4	170354873	rs13139925	T	C	5907.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.61;DB;DP=44;ExcessHet=3.0103;FS=0.936;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=0.247;SOR=0.537;VQSLOD=6.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1745,132,0
chr4	170359021	rs6553438	G	A	319.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.44;SOR=4.407;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr4	170428351	rs370525243	TG	T	579.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.890e-01;DB;DP=35;ExcessHet=3.9794;FS=1.186;MQ=60.00;MQRankSum=0.00;QD=10.54;ReadPosRankSum=-2.020e-01;SOR=0.500;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,10:35:99:168,0,338
chr4	170428352	rs11335570	G	T,*	1586.63	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=59.88;NEGATIVE_TRAIN_SITE;QD=17.25;SOR=2.154;VQSLOD=-1.434e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,21,14:35:99:1063,346,269,417,0,333
chr4	170477125	rs34540355	G	A	1658.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=82;ExcessHet=3.9794;FS=2.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-9.840e-01;SOR=0.892;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,36:82:99:924,0,1063
chr4	170483153	rs62952760	T	A	1131.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.140;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.28;ReadPosRankSum=0.589;SOR=0.818;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:402,33,0
chr4	170522973	rs4692570	C	T	321.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.520e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:236,18,0
chr4	170581570	rs4692739	G	A	9205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.00;SOR=1.133;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2036,210,0
chr4	170584625	rs55696229	C	T	88.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-1.350e-01;SOR=0.368;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:97:97,0,188
chr4	170584880	rs62333166	G	A	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.948e+00;DB;DP=61;ExcessHet=3.0103;FS=0.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-2.187e+00;SOR=0.529;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:733,0,856
chr4	170601449	rs3756284	T	C	137.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=19;ExcessHet=3.0103;FS=2.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.22;ReadPosRankSum=0.219;SOR=1.609;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:146,0,308
chr4	170611981	rs2270863	A	G	510.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=0.078;SOR=0.634;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:142,0,107
chr4	170616918	rs2062609	G	A	1647.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=2.303;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:423,36,0
chr4	170623946	rs11932759	A	G	630.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.069e+00;DB;DP=48;ExcessHet=3.0103;FS=6.551;MQ=59.39;MQRankSum=-1.285e+00;NEGATIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=2.81;SOR=0.180;VQSLOD=-2.106e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,25:48:99:639,0,820
chr4	170623982	rs11946332	C	G	934.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.100e-01;DB;DP=84;ExcessHet=3.0103;FS=2.982;MQ=59.86;MQRankSum=-1.050e+00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=1.26;SOR=0.426;VQSLOD=1.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,39:84:99:943,0,1185
chr4	170628474	rs1566522	A	G	1143.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=13;ExcessHet=6.9897;FS=3.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=-1.410e-01;SOR=0.283;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:293,0,167
chr4	170628524	rs9996636	A	G	517.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=6.9897;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=-1.150e+00;SOR=1.954;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:108,0,28
chr4	170634390	rs1058868	C	T	750.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.380e-01;DB;DP=87;ExcessHet=3.0103;FS=1.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.62;ReadPosRankSum=-2.730e-01;SOR=0.911;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,35:87:99:759,0,1335
chr4	170638891	rs113528256	ACT	A	1250.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=60;ExcessHet=3.0103;FS=2.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=1.06;SOR=1.356;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,32:60:99:1259,0,1084
chr4	170640993	rs28704165	T	C	270.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=9;ExcessHet=3.9794;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=0.397;SOR=0.105;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:89:89,0,213
chr4	170658731	rs17055114	A	G	1066.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100e+00;DB;DP=85;ExcessHet=3.0103;FS=2.877;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.494;SOR=0.829;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,49:85:99:1075,0,896
chr4	170658944	.	C	CA	944.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.290e-01;DP=22;ExcessHet=6.9897;FS=3.380;MQ=60.00;MQRankSum=0.00;QD=11.81;ReadPosRankSum=-3.080e-01;SOR=0.383;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,8:22:99:148,0,306
chr4	170663235	rs1047642	C	T	5199.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.80;ReadPosRankSum=1.93;SOR=0.727;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:488,0,695
chr4	170663321	rs6849004	C	G	4057.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.99;SOR=1.426;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:944,87,0
chr4	170669824	rs35744315	C	A	314.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=7;ExcessHet=3.9794;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.385;SOR=1.981;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,187
chr4	170670109	rs369228807	CT	C	50.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.310e-01;DB;DP=42;ExcessHet=6.9897;FS=1.028;MQ=60.00;MQRankSum=0.00;QD=0.40;ReadPosRankSum=-1.332e+00;SOR=0.515;VQSLOD=4.72;culprit=QD	GT:AD:DP:GQ:PL	0/1:36,4:42:1:1,0,812
chr4	170678993	rs11540095	T	C	13806.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=176;ExcessHet=3.0103;FS=1.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.81;ReadPosRankSum=-1.179e+00;SOR=0.582;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,69:176:99:1726,0,2795
chr4	170994554	rs5864015	GT	G	1922.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=24;ExcessHet=3.0103;FS=4.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=0.388;SOR=0.326;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,4:24:40:40,0,430
chr4	172735897	rs3796654	C	G	5509.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.34;SOR=3.026;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1660,141,0
chr4	172973421	rs1505494	G	A	3514.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.06;SOR=3.471;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:93:1|1:172973421_G_A:1386,93,0:172973421
chr4	172973423	rs10572855	CAG	C	3086.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DB;DP=31;ExcessHet=3.0103;FS=1.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=-6.700e-01;SOR=1.378;VQSLOD=7.25;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:172973421_G_A:1386,93,0:172973421
chr4	172973580	rs1505495	C	A	7714.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.932e+00;DB;DP=92;ExcessHet=3.0103;FS=2.695;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=-8.200e-02;SOR=0.455;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2867,274,0
chr4	172973986	rs2174492	C	T	987.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.067e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.86;ReadPosRankSum=-1.750e-01;SOR=3.056;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:235,18,0
chr4	173232679	rs2136033	A	G	1800.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=7.476;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:485,33,0
chr4	173232805	rs9312524	G	A	2029.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.910e-01;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=1.53;SOR=0.368;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,68:69:99:2046,170,0
chr4	173873170	rs11322401	TG	T	5458.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=58;ExcessHet=3.0103;FS=2.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.74;ReadPosRankSum=-4.350e-01;SOR=1.872;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2172,175,0
chr4	173930479	rs4696042	A	G	4444.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=2.853;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1416,117,0
chr4	174090004	rs3733477	G	A	3881.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.469e+00;DB;DP=132;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=1.23;SOR=0.686;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,73:132:99:1471,0,1369
chr4	174235079	rs138768800	GAT	G	145.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370e-01;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.39;ReadPosRankSum=1.19;SOR=0.382;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,2:15:30:30,0,424
chr4	174294990	rs5864192	A	AT	450.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.332;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.667;SOR=0.627;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:24:260,24,0
chr4	174310777	rs4695833	A	T	2284.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.867e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.29;ReadPosRankSum=-4.200e-02;SOR=1.396;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:667,51,0
chr4	174311187	rs4696064	A	G	479.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.23;ReadPosRankSum=-1.282e+00;SOR=2.985;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr4	174537063	rs4413383	G	A	2149.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.190e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=48.46;MQRankSum=-2.598e+00;POSITIVE_TRAIN_SITE;QD=33.72;ReadPosRankSum=-2.710e-01;SOR=1.997;VQSLOD=-2.339e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:814,63,0
chr4	174537221	rs11726970	T	C	5791.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=188;ExcessHet=3.9794;FS=2.704;MQ=58.52;MQRankSum=-4.117e+00;NEGATIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.774;SOR=0.941;VQSLOD=-2.216e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:86,102:188:99:2882,0,2218
chr4	174537356	rs34402795	T	A	7555.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=256;ExcessHet=3.9794;FS=0.528;MQ=59.96;MQRankSum=-9.320e-01;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.16;SOR=0.755;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:147,109:256:99:2777,0,3712
chr4	174537471	rs13103221	G	A	3146.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=74;ExcessHet=3.9794;FS=3.529;MQ=59.99;MQRankSum=0.00;QD=14.84;ReadPosRankSum=0.791;SOR=0.998;VQSLOD=5.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,32:74:99:996,0,1176
chr4	175158868	rs10026413	C	T	659.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=5.892;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:308,24,0
chr4	175160487	rs41279509	C	A	212.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=0.674;SOR=1.863;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr4	175180705	.	AAT	A	348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.77;ReadPosRankSum=0.884;SOR=0.941;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,9:16:99:357,0,282
chr4	175225452	rs4695918	G	A	4476.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.258;DB;DP=77;ExcessHet=3.9794;FS=0.459;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.562;SOR=0.639;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2265,231,0
chr4	175237208	rs4695922	C	A	341.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=9;ExcessHet=1.5490;FS=2.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=0.712;SOR=0.132;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:175237206_A_T:330,27,0:175237206
chr4	175237408	rs1553669	T	C	2248.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.380e-01;DB;DP=36;ExcessHet=3.9794;FS=1.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=0.719;SOR=0.575;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1081,108,0
chr4	175238310	rs13145292	C	T	1174.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.559;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=1.51;SOR=0.746;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:640,66,0
chr4	175414202	rs41279511	C	T	430.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.30;SOR=4.977;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:244,18,0
chr4	175414246	rs2612694	A	G	692.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.57;SOR=5.670;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:401,27,0
chr4	175429213	rs3846298	C	T	4122.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.790e-01;DB;DP=49;ExcessHet=3.0103;FS=7.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.84;ReadPosRankSum=1.20;SOR=0.281;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1580,146,0
chr4	175429370	rs5864277	GT	G	5069.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.192e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=1.87;SOR=0.647;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1898,153,0
chr4	175443156	rs1050145	C	T	1440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;DB;DP=123;ExcessHet=3.0103;FS=6.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=1.18;SOR=0.902;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,61:123:99:1449,0,1455
chr4	175443424	rs11433148	C	CT	827.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.880e-01;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.702;SOR=0.719;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,27:58:99:836,0,981
chr4	175580119	rs6553802	T	C	425.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-1.150e+00;SOR=0.420;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:105,0,31
chr4	175598029	rs6811808	T	A	519.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.62;SOR=4.977;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:175598029_T_A:90,6,0:175598029
chr4	175598033	rs6828475	G	A	556.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.51;SOR=5.283;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:175598029_T_A:90,6,0:175598029
chr4	175598334	rs6812439	T	C	4363.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.52;SOR=1.345;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1575,165,0
chr4	175603758	rs11939284	C	G	829.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.62;SOR=5.994;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr4	175604256	rs35659583	G	A	679.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=4.407;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:167,15,0
chr4	175649276	rs6815488	G	A	599.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.31;SOR=5.784;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr4	175649861	rs1872548	T	G	4425.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=3.017;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:175649861_T_G:1549,117,0:175649861
chr4	175649873	rs3834804	GA	G	1974.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.34;DB;DP=30;ExcessHet=3.9794;FS=6.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=0.659;SOR=1.797;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:96:1|1:175649861_T_G:1313,96,0:175649861
chr4	175649941	rs10000456	T	C	1087.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.48;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.63;ReadPosRankSum=0.321;SOR=1.863;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:518,36,0
chr4	175688138	rs7696263	A	G	2658.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=0.840;SOR=0.664;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:175688138_A_G:1755,117,0:175688138
chr4	175688141	rs12651268	G	A	2658.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=39;ExcessHet=1.5490;FS=0.856;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=0.836;SOR=0.604;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:175688138_A_G:1755,117,0:175688138
chr4	175688274	rs10551381	TACAC	T,TAC	446.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=1.72;SOR=0.420;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,3:8:71:297,86,71,164,0,141
chr4	175898743	rs200852076	TTTA	T	1039.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.528;DB;DP=62;ExcessHet=3.0103;FS=3.528;MQ=60.00;MQRankSum=0.00;QD=16.76;ReadPosRankSum=0.384;SOR=0.597;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,28:62:99:1048,0,1595
chr4	176733450	rs62338073	G	T	2705.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.70;QD=34.27;SOR=4.014;VQSLOD=4.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:35:1|1:176733450_G_T:588,35,0:176733450
chr4	176733452	rs113129787	G	T	2705.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.755;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.63;MQRankSum=-2.040e-01;NEGATIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=1.00;SOR=2.546;VQSLOD=-1.343e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,13:14:35:1|1:176733450_G_T:588,35,0:176733450
chr4	176892056	rs11366469	CT	C	1128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.254e+00;DB;DP=89;ExcessHet=3.0103;FS=4.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-1.273e+00;SOR=0.362;VQSLOD=6.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,46:89:99:1137,0,1037
chr4	177040968	rs57542178	G	A	512.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.062e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.97;ReadPosRankSum=-1.000e-01;SOR=1.358;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:521,0,320
chr4	177073026	rs4690661	G	A	9522.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=0.929;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3331,330,0
chr4	177083166	rs2877924	A	G	6498.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-1.784e+00;SOR=0.767;VQSLOD=6.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:808,0,916
chr4	177087322	rs4388031	C	T	4727.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.831;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1327,126,0
chr4	177089584	rs1564616	G	T	553.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=0.674;SOR=3.383;VQSLOD=18.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,69
chr4	177093505	rs4538426	T	G	2652.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.790e-01;DB;DP=65;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.75;ReadPosRankSum=2.11;SOR=0.728;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,36:65:99:826,0,672
chr4	177095908	rs4690665	A	G	1805.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=80;ExcessHet=3.9794;FS=0.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.378;SOR=0.604;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,32:80:99:801,0,1146
chr4	177098285	rs17625943	G	A	1532.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.055;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.213;SOR=0.660;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,25:72:99:461,0,1042
chr4	177100515	rs75391699	GT	G	902.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.080;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.00;SOR=0.735;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,18:29:99:453,0,232
chr4	177113764	rs6857056	A	C	4158.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.51;ReadPosRankSum=0.504;SOR=0.524;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1026,102,0
chr4	177113836	rs6832177	C	T	2308.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.63;DB;DP=45;ExcessHet=1.5490;FS=0.778;MQ=59.95;MQRankSum=1.02;POSITIVE_TRAIN_SITE;QD=20.99;ReadPosRankSum=1.25;SOR=0.721;VQSLOD=2.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1512,135,0
chr4	177114889	rs6820936	T	C	466.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.78;SOR=4.977;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr4	177116463	rs994252	C	G	14418.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.68;DB;DP=177;ExcessHet=3.0103;FS=0.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.36;ReadPosRankSum=0.271;SOR=0.592;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,175:177:99:6118,450,0
chr4	177116779	rs4565028	T	C	2889.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.49;SOR=7.054;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1512,108,0
chr4	177137077	rs56261572	A	G	102.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.15;SOR=1.179;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr4	177137988	rs6827525	C	T	2104.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631e+00;DB;DP=47;ExcessHet=1.5490;FS=1.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=0.714;SOR=0.500;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:647,0,602
chr4	177142776	rs10032098	C	A	6971.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.12;SOR=1.704;VQSLOD=20.61;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,47:47:99:1|1:177142776_C_A:1789,141,0:177142776
chr4	177142777	rs13120838	A	C	4298.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=47;ExcessHet=1.5490;FS=2.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.67;ReadPosRankSum=-7.750e-01;SOR=1.089;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,27:47:99:0|1:177142776_C_A:855,0,425:177142776
chr4	177142869	rs28415362	T	G	1229.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.015e+00;DB;DP=13;ExcessHet=1.5490;FS=4.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.75;ReadPosRankSum=0.832;SOR=3.145;VQSLOD=17.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:194,0,219
chr4	177143417	rs13147229	C	T	2067.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=31;ExcessHet=1.5490;FS=2.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=1.53;SOR=1.126;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:364,0,399
chr4	177143664	rs6553937	C	G	2391.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.79;SOR=3.477;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:862,75,0
chr4	177143727	rs6830358	G	T	631.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.26;ReadPosRankSum=1.98;SOR=2.419;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:177143727_G_T:198,0,153:177143727
chr4	177143728	rs6830359	G	C	631.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.26;ReadPosRankSum=1.86;SOR=2.419;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:177143727_G_T:198,0,153:177143727
chr4	177146742	rs11429453	A	AT	52.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.12;SOR=2.303;VQSLOD=5.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
chr4	177241136	rs2305506	C	T	1514.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.064;DB;DP=92;ExcessHet=3.0103;FS=2.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-6.700e-02;SOR=0.396;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,51:92:99:1523,0,1253
chr4	177249587	rs150115069	GTT	G	78.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.66;SOR=3.258;VQSLOD=3.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:4:6:66,6,0
chr4	177605081	rs3062984	CTCA	C	8030.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=27.55;SOR=1.922;VQSLOD=5.47;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2835,190,0
chr4	177605354	.	A	T	42.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.732e+00;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.70;ReadPosRankSum=-2.820e-01;SOR=0.132;VQSLOD=21.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,2:9:51:51,0,259
chr4	177608775	rs4604006	T	C	1378.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.17;DB;DP=21;ExcessHet=3.9794;FS=9.828;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=1.16;SOR=1.965;VQSLOD=18.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:887,63,0
chr4	177608875	rs4529000	A	C	2978.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.78;SOR=3.174;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:852,66,0
chr4	177609203	rs13136065	G	A	1604.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.484e+00;DB;DP=25;ExcessHet=3.9794;FS=3.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.45;ReadPosRankSum=0.561;SOR=0.366;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:854,75,0
chr4	177609259	rs2877962	C	T	736.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.377e+00;DB;DP=8;ExcessHet=3.9794;FS=3.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=0.302;SOR=0.086;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:177609259_C_T:357,24,0:177609259
chr4	177609264	rs2333495	C	T	702.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.102e+00;DB;DP=7;ExcessHet=3.9794;FS=6.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=0.00;SOR=0.077;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:177609259_C_T:315,21,0:177609259
chr4	177648812	rs3063166	T	TAA	1254.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.83;SOR=6.518;VQSLOD=5.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:21:294,21,0
chr4	177650614	rs3836595	T	TA	2201.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.87;SOR=6.123;VQSLOD=7.00;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,13:13:39:437,39,0
chr4	178167074	rs2118922	G	A	1080.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.194;DB;DP=22;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=0.343;SOR=1.007;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:854,66,0
chr4	178167282	rs1347894	G	A	7284.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=0.936;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2217,224,0
chr4	178169500	rs3828517	G	A	3076.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.981;DB;DP=52;ExcessHet=3.9794;FS=2.546;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=2.12;SOR=0.531;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1580,156,0
chr4	178231536	rs10015593	C	G	460.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.05;ReadPosRankSum=0.524;SOR=1.402;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:52:52,0,116
chr4	178256759	rs3215157	CA	C	648.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=15;ExcessHet=3.9794;FS=4.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=0.455;SOR=0.180;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:184,0,155
chr4	178257516	rs2271102	G	A	4768.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=80;ExcessHet=3.9794;FS=0.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=-4.930e-01;SOR=0.620;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,34:80:99:931,0,1325
chr4	178262613	rs35370036	GT	G	580.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019e+00;DB;DP=61;ExcessHet=3.0103;FS=7.139;MQ=59.93;MQRankSum=0.00;QD=9.51;ReadPosRankSum=1.74;SOR=0.256;VQSLOD=3.98;culprit=FS	GT:AD:DP:GQ:PL	0/1:31,30:61:99:589,0,607
chr4	178262683	rs17676249	T	C	791.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=85;ExcessHet=3.0103;FS=4.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.31;ReadPosRankSum=0.438;SOR=0.925;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,33:85:99:800,0,1265
chr4	178262784	rs34193982	A	G	1335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166e+00;DB;DP=38;ExcessHet=3.9794;FS=11.814;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=0.870;SOR=0.078;VQSLOD=17.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,29:38:99:800,0,245
chr4	178262811	rs28618113	T	C	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=1.17;SOR=0.399;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,7:29:99:185,0,740
chr4	178272748	rs1054753	G	A	2176.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-01;DB;DP=30;ExcessHet=1.5490;FS=2.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.88;ReadPosRankSum=-3.940e-01;SOR=0.346;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:391,0,429
chr4	178272846	rs1054754	C	T	556.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.04;SOR=4.047;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:211,18,0
chr4	178274377	rs3805173	T	C	412.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-6.190e-01;SOR=0.507;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,219
chr4	178274565	rs2048074	A	G	5573.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.591;DB;DP=73;ExcessHet=3.0103;FS=2.888;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.19;ReadPosRankSum=0.253;SOR=0.418;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2326,219,0
chr4	178274694	rs10007075	T	G	4944.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=60;ExcessHet=3.0103;FS=3.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=0.402;SOR=0.420;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1990,180,0
chr4	178274750	rs13112358	C	T	3388.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.955e+00;DB;DP=45;ExcessHet=3.9794;FS=10.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.30;ReadPosRankSum=1.20;SOR=0.589;VQSLOD=18.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,26:45:99:777,0,574
chr4	178274835	rs13112390	A	C	3038.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.516;DB;DP=33;ExcessHet=3.0103;FS=1.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=-1.284e+00;SOR=0.495;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1031,99,0
chr4	178281754	rs1876268	G	A	8231.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=0.436;SOR=0.746;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2655,261,0
chr4	178352679	rs1061814	T	G	3576.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=34;ExcessHet=3.0103;FS=2.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.39;ReadPosRankSum=0.307;SOR=0.290;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,22:34:99:721,0,379
chr4	178353046	rs3805167	G	C	3338.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=25;ExcessHet=3.0103;FS=1.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.06;ReadPosRankSum=1.69;SOR=0.538;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:333,0,481
chr4	178354667	rs2279931	C	A	818.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=0.282;SOR=2.147;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:56:56,0,286
chr4	178354680	rs10031429	A	T	1011.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.74;SOR=6.593;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:315,24,0
chr4	178355668	rs4690521	C	G	13995.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.305;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:4591,466,0
chr4	178355880	rs4690385	C	T	807.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=6.273;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:194,15,0
chr4	178357566	rs71599314	A	ATAATTG	646.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.387e+00;DB;DP=26;ExcessHet=3.0103;FS=7.204;MQ=60.00;MQRankSum=0.00;QD=24.86;ReadPosRankSum=-7.910e-01;SOR=0.094;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:10,16:26:99:655,0,661
chr4	178359679	rs2271100	T	C	50.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=0.623;SOR=0.307;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:58:58,0,141
chr4	178359960	rs2228119	G	C	6868.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.08;SOR=1.158;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2267,219,0
chr4	178360196	rs6855346	T	C	510.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.56;SOR=0.836;VQSLOD=19.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:220,18,0
chr4	178361017	rs11312963	GA	G	4456.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=2.665;VQSLOD=5.54;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1282,126,0
chr4	178361414	rs34241758	A	C	935.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.508e+00;DB;DP=74;ExcessHet=3.0103;FS=4.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.206;SOR=0.312;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:944,0,869
chr4	178361621	rs3792607	T	A	1073.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110e-01;DB;DP=10;ExcessHet=3.9794;FS=1.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-4.930e-01;SOR=1.364;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:51:51,0,266
chr4	178363378	rs11131799	G	A	3663.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.543;DB;DP=90;ExcessHet=1.5490;FS=4.667;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=1.44;SOR=0.394;VQSLOD=7.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2802,268,0
chr4	178882120	rs9994032	A	T	3029.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=2.044;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:928,87,0
chr4	178882196	rs59355585	A	G	312.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.23;ReadPosRankSum=-1.645e+00;SOR=3.258;VQSLOD=17.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,9:10:13:321,0,13
chr4	178887811	rs35244240	C	CTTTT	3143.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.501;DB;DP=27;ExcessHet=3.9794;FS=0.695;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=-9.280e-01;SOR=0.584;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,21:27:99:1531,117,0
chr4	178887815	rs28409849	C	T	3291.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=37;ExcessHet=3.9794;FS=1.408;MQ=59.91;MQRankSum=0.00;QD=23.35;ReadPosRankSum=-1.325e+00;SOR=0.547;VQSLOD=5.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1629,111,0
chr4	178911873	rs17065497	G	A	251.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=-2.100e-02;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:93:260,0,93
chr4	183090227	rs374205249	T	TACACACACACAC	1187.30	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.730e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.91;MQRankSum=-6.050e-01;POSITIVE_TRAIN_SITE;QD=29.24;ReadPosRankSum=-1.720e-01;SOR=3.912;VQSLOD=0.622;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:21:302,21,0
chr4	183267728	rs33933747	TA	T	2637.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.144;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=1.59;SOR=1.251;VQSLOD=7.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,34:35:78:838,78,0
chr4	183268148	rs11373586	C	CG,CGG	4498.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.280e-01;DB;DP=66;ExcessHet=3.0103;FS=3.930;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.52;ReadPosRankSum=-8.930e-01;SOR=0.445;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,42,23:66:99:1865,603,444,1052,0,1013
chr4	183268174	rs6552554	C	T	4864.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.566;DB;DP=69;ExcessHet=3.0103;FS=1.445;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=0.900;SOR=0.876;VQSLOD=6.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2117,204,0
chr4	183271186	rs10644033	G	GA,GAA	2092.74	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.76;DB;DP=28;ExcessHet=3.0103;FS=8.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=0.558;SOR=3.810;VQSLOD=3.48;culprit=FS	GT:AD:DP:GQ:PL	1/2:1,12,15:28:99:753,362,312,256,0,244
chr4	183271253	rs4862039	T	C	476.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.08;ReadPosRankSum=0.545;SOR=0.770;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:54:269,0,54
chr4	183370056	rs11721730	C	T	16743.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.720e+00;DB;DP=245;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=-7.740e-01;SOR=0.654;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,245:245:99:7456,732,0
chr4	183370244	rs35591339	AGCG	A	18307.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.04;SOR=2.245;VQSLOD=4.71;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,137:137:99:6159,415,0
chr4	183370390	rs56070922	C	CCGCTCCGGAGCCGGTGGCTCCGCTT	1709.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.15;SOR=2.774;VQSLOD=4.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:494,33,0
chr4	183522526	rs28403363	A	G	605.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=-2.410e-01;SOR=1.708;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr4	183549831	rs74199039	T	G	871.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.281;DB;DP=77;ExcessHet=3.0103;FS=1.867;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=0.148;SOR=0.484;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,37:77:99:880,0,968
chr4	183574704	rs76692326	A	G	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=1.86;SOR=0.941;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:341,0,240
chr4	183594117	rs3749508	A	T	488.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=3.383;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:54:505,54,0
chr4	183600752	rs61060098	GA	G	210.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.470e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=-5.890e-01;SOR=1.609;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:113,12,0
chr4	183601593	rs79243933	G	C	414.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.017e+00;DB;DP=22;ExcessHet=3.0103;FS=1.897;MQ=60.00;MQRankSum=0.00;QD=18.83;ReadPosRankSum=0.923;SOR=0.307;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,16:22:99:423,0,193
chr4	183601666	rs79195097	G	A	590.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.358e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.36;ReadPosRankSum=0.700;SOR=0.743;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:599,0,454
chr4	183601847	rs2871328	T	C	6484.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=140;ExcessHet=1.5490;FS=1.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=-1.044e+00;SOR=0.809;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,62:140:99:1472,0,1791
chr4	183635468	rs10598500	CA	C	657.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.840e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=59.72;MQRankSum=-2.890e-01;QD=17.31;ReadPosRankSum=1.83;SOR=0.551;VQSLOD=0.239;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:17:38:126,0,38
chr4	183649938	rs2309698	G	A	1062.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.21;ReadPosRankSum=0.738;SOR=3.545;VQSLOD=17.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:281,0,142
chr4	183650026	rs5864796	GA	G	2372.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=39;ExcessHet=3.0103;FS=9.949;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.639;SOR=1.870;VQSLOD=4.58;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,20:39:99:413,0,366
chr4	183652175	rs10866256	T	C	10748.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=1.228;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2518,228,0
chr4	183659362	rs2309767	T	C	708.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.025e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=-2.720e-01;SOR=2.925;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:86:86,0,136
chr4	183664522	rs7654255	T	C	4455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.790e-01;DB;DP=137;ExcessHet=6.9897;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=0.117;SOR=0.750;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,62:137:99:1483,0,1776
chr4	183665437	rs6835335	C	G	4177.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=1.147;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1031,108,0
chr4	183673226	rs5864797	T	TA	1314.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.082e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.30;ReadPosRankSum=0.087;SOR=0.773;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,11:20:62:257,0,62
chr4	183673247	rs2309770	T	A	3133.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.190e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.02;ReadPosRankSum=-7.480e-01;SOR=0.646;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1070,90,0
chr4	183673286	rs139756555	T	TCTAA	561.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.759e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=0.968;SOR=0.818;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,15:35:99:570,0,795
chr4	183673454	rs149910069	CAACT	C	742.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.9794;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.95;ReadPosRankSum=0.967;SOR=3.716;VQSLOD=4.63;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr4	183674577	rs13130747	G	C	2453.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.987e+00;DB;DP=44;ExcessHet=6.9897;FS=0.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-1.290e-01;SOR=0.501;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:608,0,642
chr4	183710196	rs77672009	G	C	1448.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-7.420e-01;SOR=0.653;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,29:61:99:810,0,727
chr4	183812287	rs3190314	A	G	276.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.68;ReadPosRankSum=-3.190e-01;SOR=0.223;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:55:199,0,55
chr4	183812301	rs3088349	T	C	265.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=0.00;SOR=0.293;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:56:233,0,56
chr4	183814169	rs2070805	A	G	992.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.041e+00;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.47;ReadPosRankSum=0.098;SOR=0.596;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:699,72,0
chr4	183815561	rs17331744	T	C	905.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.330e-01;DB;DP=20;ExcessHet=1.5490;FS=1.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.23;ReadPosRankSum=0.204;SOR=0.286;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:662,60,0
chr4	183815688	rs4742	A	G	3977.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.630e-01;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.08;ReadPosRankSum=0.329;SOR=0.415;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1712,140,0
chr4	183835789	rs28433797	A	T	218.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=0.967;SOR=1.402;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:77,0,33
chr4	183836490	rs11730323	C	T	1488.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-1.470e-01;SOR=0.595;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:545,0,505
chr4	183838025	rs13114262	A	G	2137.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=68;ExcessHet=6.9897;FS=0.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.135;SOR=0.634;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,31:68:99:762,0,939
chr4	183838103	rs4371655	C	T	1206.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.899e+00;DB;DP=35;ExcessHet=6.9897;FS=0.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.828;SOR=0.540;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:451,0,491
chr4	184170025	rs907357	G	A	9080.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=1.163;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2792,269,0
chr4	184171187	rs10020261	T	C	4570.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.07;DB;DP=43;ExcessHet=3.0103;FS=2.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.74;ReadPosRankSum=1.91;SOR=0.520;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1364,129,0
chr4	184181012	rs17074537	G	A	1187.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.030e-01;DB;DP=30;ExcessHet=6.9897;FS=5.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=-1.420e-01;SOR=0.201;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:274,0,566
chr4	184182001	rs10780066	A	G	596.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.20;SOR=5.421;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:305,21,0
chr4	184190355	rs11407064	A	AC	2368.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.574e+00;DB;DP=28;ExcessHet=3.9794;FS=10.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=0.945;SOR=0.155;VQSLOD=3.67;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1129,84,0
chr4	184190535	rs6858486	G	A	3476.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275e+00;DB;DP=50;ExcessHet=3.9794;FS=1.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=-1.287e+00;SOR=0.554;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1668,150,0
chr4	184192037	rs1473070	C	T	68.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=2.303;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr4	184192183	rs28647357	T	C	2234.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.99;DB;DP=19;ExcessHet=3.0103;FS=1.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=-1.122e+00;SOR=1.204;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:719,57,0
chr4	184192278	rs11734376	G	T	1534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.937;DB;DP=75;ExcessHet=3.9794;FS=0.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=-1.940e-01;SOR=0.767;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:772,0,915
chr4	184201909	rs11132173	G	A	1894.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.34;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.84;ReadPosRankSum=0.057;SOR=2.165;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:720,57,0
chr4	184202148	rs11132174	G	T	4754.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=2.005;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1479,138,0
chr4	184203706	rs2871353	A	T	2972.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.500e-02;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=-4.370e-01;SOR=1.142;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:953,87,0
chr4	184203886	rs3814422	G	C	7747.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=97;ExcessHet=3.0103;FS=3.255;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=-4.320e-01;SOR=0.458;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2939,290,0
chr4	184204099	rs3814421	C	T	4223.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.560e+00;DB;DP=67;ExcessHet=3.0103;FS=2.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=-1.941e+00;SOR=0.460;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1938,199,0
chr4	184204267	rs3814418	T	C	544.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=37.72;ReadPosRankSum=-6.740e-01;SOR=3.126;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr4	184206862	rs7678009	G	A	189.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=3.611;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr4	184211030	rs3828559	A	G	354.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=1.28;SOR=1.765;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr4	184243528	rs7688467	G	A	4381.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.120e-01;DB;DP=49;ExcessHet=3.0103;FS=0.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.708;SOR=0.622;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,48:49:99:1383,104,0
chr4	184366629	rs11282266	T	TGCACA	1802.02	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.140e-01;DB;DP=15;ExcessHet=3.9794;FS=3.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.76;ReadPosRankSum=-1.463e+00;SOR=0.293;VQSLOD=6.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:675,45,0
chr4	184367558	rs10533201	TCTG	T	7031.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.590e-01;DB;DP=39;ExcessHet=3.0103;FS=3.876;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.31;ReadPosRankSum=1.10;SOR=0.406;VQSLOD=6.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1739,117,0
chr4	184426387	rs8872	C	T	9695.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=0.893;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2852,258,0
chr4	184426526	rs6552675	A	G	7537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.63;SOR=1.726;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2045,189,0
chr4	184567273	rs6552693	T	G	79	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.32;SOR=2.303;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	184570723	rs58975219	TA	T	2385.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.449;DB;DP=53;ExcessHet=6.9897;FS=1.702;MQ=60.00;MQRankSum=0.00;QD=11.53;ReadPosRankSum=0.577;SOR=0.558;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,31:53:99:716,0,458
chr4	184570891	rs6552694	T	C	1191.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=18;ExcessHet=6.9897;FS=4.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=-3.170e-01;SOR=0.158;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:398,0,226
chr4	184572218	rs73002706	G	A	905.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.716;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.878;SOR=0.693;VQSLOD=2.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,9:25:99:257,0,382
chr4	184577348	rs5019706	G	A	868.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.61;SOR=6.273;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr4	184585269	rs72691592	A	G	176.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=17;ExcessHet=3.9794;FS=5.643;MQ=60.00;MQRankSum=0.00;QD=8.03;ReadPosRankSum=-1.510e-01;SOR=2.303;VQSLOD=18.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:185,0,251
chr4	184587658	rs5864850	G	GTACC	2102.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=34;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.18;ReadPosRankSum=-2.480e-01;SOR=0.673;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,15:34:99:614,0,750
chr4	184587701	rs9996255	G	A	980.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.016;DB;DP=21;ExcessHet=6.9897;FS=2.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-7.790e-01;SOR=0.459;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:149,0,384
chr4	184588309	rs12507873	A	C	1818.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=88;ExcessHet=3.9794;FS=1.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=2.04;SOR=0.557;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,32:88:99:744,0,1337
chr4	184588977	rs7655435	T	C	669.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.306e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-1.233e+00;SOR=0.606;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,191
chr4	184596446	rs7678174	G	A	1790.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.470e-01;DB;DP=36;ExcessHet=6.9897;FS=0.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-7.490e-01;SOR=0.595;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:354,0,482
chr4	184600601	rs4241779	A	G	4015.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e-01;DB;DP=103;ExcessHet=6.9897;FS=3.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=-4.570e-01;SOR=0.885;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,47:103:99:1048,0,1317
chr4	184601195	rs10022122	T	G	671.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=59.44;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=0.116;SOR=0.593;VQSLOD=4.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:91:190,0,91
chr4	184606653	rs11132206	G	A	967.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=28;ExcessHet=6.9897;FS=5.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=0.325;SOR=1.921;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:346,0,376
chr4	184607970	rs9312316	T	C	1586.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.356e+00;DB;DP=27;ExcessHet=6.9897;FS=1.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.489;SOR=0.911;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,12:27:99:346,0,457
chr4	184612553	rs67383011	G	C	2191.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=74;ExcessHet=3.9794;FS=1.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=1.29;SOR=0.820;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,25:74:99:640,0,1162
chr4	184614547	rs6842945	G	C	143.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=0.00;SOR=1.447;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:79,0,33
chr4	184614603	rs36125309	C	T	227.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:69,0,65
chr4	184615948	rs11272521	TATAAAATAAGC	T	1472.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;DB;DP=32;ExcessHet=3.9794;FS=2.476;MQ=59.93;MQRankSum=1.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.473;SOR=0.358;VQSLOD=1.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,15:32:99:580,0,1983
chr4	184618470	rs6816944	G	A	449.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.07;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=-1.800e-01;SOR=0.776;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:144,0,106
chr4	184619017	rs12651215	C	G	1720.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DB;DP=35;ExcessHet=6.9897;FS=9.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=0.278;SOR=1.628;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,11:35:99:330,0,714
chr4	184629794	rs9312318	G	A	1003.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.990e-01;DB;DP=17;ExcessHet=3.9794;FS=1.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=0.087;SOR=0.422;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:320,0,230
chr4	184930015	rs7662026	C	G	608.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=5.421;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr4	184930289	rs34402224	G	GT	630.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.242;DB;DP=24;ExcessHet=6.9897;FS=0.781;MQ=59.80;MQRankSum=-4.810e-01;QD=7.42;ReadPosRankSum=-8.760e-01;SOR=0.609;VQSLOD=0.434;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,10:24:84:206,0,84
chr4	184932609	rs4862282	G	A	7591.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=0.806;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2336,223,0
chr4	185038274	rs4642291	G	A	2211.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.709e+00;DB;DP=33;ExcessHet=6.9897;FS=1.722;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=-4.300e-01;SOR=0.484;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:496,0,470
chr4	185038691	rs13103966	A	G	811.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=0.187;SOR=0.693;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:257,0,210
chr4	185039216	rs3885669	G	C	1027.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.66;ReadPosRankSum=0.00;SOR=3.690;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:266,18,0
chr4	185328349	rs72701797	C	T	325.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-7.350e-01;SOR=0.914;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:241,0,223
chr4	185329052	rs2241500	G	A	660.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.39;ReadPosRankSum=-1.080e-01;SOR=0.880;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:325,0,123
chr4	185339517	rs2288246	C	T	986.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.115e+00;DB;DP=18;ExcessHet=1.5490;FS=3.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.67;ReadPosRankSum=-1.404e+00;SOR=0.180;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:178,0,405
chr4	185340725	rs70959195	G	GA	339.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=26;ExcessHet=6.9897;FS=6.553;MQ=59.77;MQRankSum=0.00;QD=5.86;ReadPosRankSum=0.634;SOR=1.202;VQSLOD=4.41;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,10:26:97:97,0,200
chr4	185550764	rs4647693	T	C	103.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=-5.110e-01;SOR=1.329;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:112,0,211
chr4	185550779	rs10660141	T	TA	572.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.887;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.87;ReadPosRankSum=-8.870e-01;SOR=3.528;VQSLOD=5.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:188,21,0
chr4	185551966	rs2705891	T	C	1277.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.196;DB;DP=10;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.95;ReadPosRankSum=-3.700e-01;SOR=4.235;VQSLOD=12.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,2:10:52:52,0,269
chr4	185553098	rs2705897	T	G	7113.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.997;DB;DP=67;ExcessHet=3.0103;FS=0.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.16;ReadPosRankSum=2.75;SOR=0.803;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,34:67:99:943,0,924
chr4	185553353	rs1405944	A	T	2792.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.86;DB;DP=24;ExcessHet=3.9794;FS=5.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.38;ReadPosRankSum=0.435;SOR=0.765;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:470,0,332
chr4	185559487	rs2705901	G	C	6311.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.499;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=0.726;SOR=0.693;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,41:79:99:1047,0,907
chr4	185578229	rs13108061	G	T	1276.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.715e+00;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.17;ReadPosRankSum=0.174;SOR=0.784;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,19:20:16:723,16,0
chr4	185583092	rs60624489	C	CTATT	7904.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.087;DB;DP=74;ExcessHet=3.0103;FS=1.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.93;ReadPosRankSum=-1.648e+00;SOR=0.574;VQSLOD=6.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3241,223,0
chr4	185587165	rs2463447	A	G	6515.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.116;DB;DP=89;ExcessHet=3.0103;FS=3.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=1.38;SOR=0.762;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2550,266,0
chr4	185599679	.	CT	C	73.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.53;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:12:32,0,12
chr4	185606395	rs2705889	C	T	782.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.48;SOR=6.091;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr4	185612627	rs35926668	CT	C	354.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.940e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=59.92;MQRankSum=0.722;QD=13.65;ReadPosRankSum=0.469;SOR=1.445;VQSLOD=9.700e-03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,8:9:2:182,2,0
chr4	185613051	.	CT	C	388.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=0.524;SOR=4.407;VQSLOD=4.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:182,24,0
chr4	185622046	rs11728389	C	T	3656.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.440e+00;DB;DP=76;ExcessHet=1.5490;FS=2.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=-1.036e+00;SOR=0.487;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2324,227,0
chr4	185634171	rs34353251	CA	C	695.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=22;ExcessHet=6.9897;FS=3.339;MQ=60.00;MQRankSum=0.00;QD=8.39;ReadPosRankSum=0.882;SOR=1.154;VQSLOD=5.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,4:22:47:47,0,437
chr4	185649852	rs6843169	T	C	785.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.39;ReadPosRankSum=0.842;SOR=4.407;VQSLOD=14.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr4	185652147	rs3806796	G	A	1889.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.950e-01;DB;DP=48;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.733;SOR=0.804;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1420,141,0
chr4	185652201	rs7675046	G	A	2651.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.170;DB;DP=32;ExcessHet=3.9794;FS=1.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=1.30;SOR=0.941;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:96:1|1:185652201_G_A:1340,96,0:185652201
chr4	185652224	rs11362720	AC	A	1544.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.32;DB;DP=24;ExcessHet=3.9794;FS=3.531;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=-2.104e+00;SOR=1.187;VQSLOD=6.40;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:185652201_G_A:1067,72,0:185652201
chr4	185652388	rs7675106	C	G	70.25	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=2.303;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	185655487	rs876838	G	T	977.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.280e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=1.28;SOR=1.179;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:517,42,0
chr4	185655572	rs902173	A	G	285.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.07;ReadPosRankSum=0.967;SOR=1.402;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:185655572_A_G:220,15,0:185655572
chr4	185655592	rs7699915	G	T	169	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=0.00;SOR=1.872;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:185655572_A_G:135,9,0:185655572
chr4	185678118	rs4862413	C	G	2945.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.93;SOR=3.737;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:942,75,0
chr4	185678398	.	G	C	364.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.084e+00;DP=22;ExcessHet=3.0103;FS=3.067;MQ=60.00;MQRankSum=0.00;QD=16.56;ReadPosRankSum=-8.350e-01;SOR=0.148;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:373,0,284
chr4	185681475	rs6825554	G	C	4449.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.56;SOR=3.132;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1326,120,0
chr4	185683840	rs939040	A	G	2802.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.27;SOR=4.003;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:951,75,0
chr4	185686032	rs2292898	C	T	5194.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.903e+00;DB;DP=84;ExcessHet=3.9794;FS=1.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=-3.980e-01;SOR=0.586;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,40:84:99:1064,0,1248
chr4	185686856	rs3792314	C	G	1757.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.17;DB;DP=19;ExcessHet=3.9794;FS=6.718;MQ=59.95;MQRankSum=0.873;NEGATIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.481;SOR=2.101;VQSLOD=-1.203e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,7:19:99:246,0,404
chr4	185687233	rs3749233	C	T	590.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.181e+00;DB;DP=32;ExcessHet=3.0103;FS=5.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.45;ReadPosRankSum=-1.480e+00;SOR=0.088;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,19:32:99:599,0,477
chr4	185687687	rs12374289	A	C	451.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.350e-01;DB;DP=46;ExcessHet=3.0103;FS=1.165;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-4.880e-01;SOR=0.497;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:460,0,731
chr4	185687863	rs11727009	A	G	727.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.900e-02;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.040;SOR=0.765;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,28:57:99:736,0,781
chr4	185701813	rs7656414	A	C	336.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=4.407;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	185705006	rs2102862	G	A	2771.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.325;DB;DP=42;ExcessHet=1.5490;FS=2.345;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=-9.850e-01;SOR=0.387;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,26:42:99:651,0,349
chr4	185735054	rs7676928	G	A	3017.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.370e+00;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=1.03;SOR=0.631;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1820,170,0
chr4	185736113	rs2280297	G	C	1939.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.220e-01;DB;DP=26;ExcessHet=3.9794;FS=1.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=-1.003e+00;SOR=0.521;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:865,78,0
chr4	185772384	rs1032299	A	G	3129.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.65;SOR=1.994;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1196,117,0
chr4	185859505	rs6821859	T	G	12351.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=215;ExcessHet=3.9794;FS=0.565;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=0.937;SOR=0.797;VQSLOD=6.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,213:215:99:6482,623,0
chr4	185999348	rs10023344	T	C	2520.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.14;SOR=2.472;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1262,111,0
chr4	185999404	rs10033666	A	T	1104.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=64;ExcessHet=3.9794;FS=5.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-4.110e-01;SOR=1.223;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,22:64:99:499,0,1048
chr4	185999543	rs6841061	G	A	3453.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=1.654;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1791,174,0
chr4	185999587	rs6818170	T	A	2951.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.385e+00;DB;DP=36;ExcessHet=3.0103;FS=1.264;MQ=59.96;MQRankSum=-8.690e-01;POSITIVE_TRAIN_SITE;QD=28.66;ReadPosRankSum=-1.870e-01;SOR=1.032;VQSLOD=1.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1208,108,0
chr4	186064759	rs143715129	GCGCCCGCCCGCC	G	500.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.73;ReadPosRankSum=2.20;SOR=2.985;VQSLOD=4.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:16:227,16,0
chr4	186065844	rs34795113	C	CT	1637.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.670e-01;DB;DP=41;ExcessHet=1.5490;FS=1.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=-2.010e-01;SOR=0.960;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1176,123,0
chr4	186067628	rs28491861	G	A	193.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.86;SOR=1.981;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr4	186111639	rs1133657	T	C	7786.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.98;DB;DP=116;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=0.159;SOR=0.705;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3655,348,0
chr4	186112111	rs3108237	G	A	5883.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.38;DB;DP=83;ExcessHet=3.9794;FS=3.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=0.091;SOR=0.516;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2728,249,0
chr4	186112208	rs116632163	G	T	1055.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=88;ExcessHet=3.0103;FS=4.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-4.240e-01;SOR=0.836;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,39:88:99:1064,0,1230
chr4	186112369	rs34825796	G	GA	2976.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.960e-01;DB;DP=41;ExcessHet=3.9794;FS=1.404;MQ=60.00;MQRankSum=0.00;QD=16.09;ReadPosRankSum=0.131;SOR=0.540;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1171,123,0
chr4	186168387	rs3108252	T	G	637.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.92;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.73;ReadPosRankSum=-1.042e+00;SOR=1.708;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:299,21,0
chr4	186170358	rs3108229	G	A	2233.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.810e-01;DB;DP=42;ExcessHet=1.5490;FS=2.598;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.77;ReadPosRankSum=-1.034e+00;SOR=1.280;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1515,126,0
chr4	186185551	rs2280664	T	C	173.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=2.10;SOR=0.551;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr4	186188008	rs35770217	CCT	C	120.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.23;SOR=3.258;VQSLOD=6.13;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:137,12,0
chr4	186188373	rs57930723	TA	T	355.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410e+00;DB;DP=26;ExcessHet=6.9897;FS=5.489;MQ=60.00;MQRankSum=0.00;QD=4.29;ReadPosRankSum=-4.800e-01;SOR=0.171;VQSLOD=4.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,6:26:79:79,0,429
chr4	186188460	rs3112865	C	T	484.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=0.518;SOR=0.560;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:201,15,0
chr4	186208975	rs34265529	A	AG	209.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.440e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.26;ReadPosRankSum=-5.980e-01;SOR=1.402;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr4	186319948	.	CA	C	272.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DP=11;ExcessHet=3.9794;FS=2.823;MQ=60.00;MQRankSum=0.00;QD=7.56;ReadPosRankSum=0.090;SOR=0.232;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,5:11:70:71,0,70
chr4	186320666	rs11287696	TA	T	567.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.264;DB;DP=10;ExcessHet=6.9897;FS=2.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=-1.050e-01;SOR=0.289;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:57:167,0,57
chr4	186321067	rs1053218	C	T	2130.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=43;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=0.195;SOR=0.756;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,26:43:99:765,0,477
chr4	186321447	rs3733646	C	G	694.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=0.594;SOR=0.941;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:143,0,172
chr4	186323209	rs3733645	A	G	2091.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=0.640;SOR=0.723;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:513,0,411
chr4	186323593	rs6552880	C	T	1176.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287e+00;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.52;ReadPosRankSum=2.18;SOR=0.960;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:83:353,0,83
chr4	186324841	rs13126680	T	A	2195.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.66;DB;DP=22;ExcessHet=3.9794;FS=1.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=1.16;SOR=1.061;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:277,0,353
chr4	186327233	rs11941135	C	G	275.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:94:145,0,94
chr4	186336583	rs10032989	G	A	1401.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=-2.490e-01;SOR=0.519;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:424,0,293
chr4	186339449	rs10000869	A	G	404.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=5;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=0.545;SOR=0.616;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,105
chr4	186339584	rs10003160	A	G	5239.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=1.858;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1697,147,0
chr4	186347055	rs2289720	G	A	7373.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DB;DP=209;ExcessHet=6.9897;FS=4.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-2.750e-01;SOR=1.001;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,94:209:99:2309,0,2854
chr4	186347073	rs11132303	G	C	6013.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240e-01;DB;DP=178;ExcessHet=6.9897;FS=1.171;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-5.990e-01;SOR=0.822;VQSLOD=5.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,76:178:99:1881,0,2647
chr4	186347092	rs10866275	T	C	13095.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=59.96;QD=31.79;SOR=1.966;VQSLOD=3.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4472,420,0
chr4	186350559	rs6856909	C	T	3421.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=142;ExcessHet=3.9794;FS=1.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=8.000e-03;SOR=0.655;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,64:142:99:1454,0,1779
chr4	186357523	rs7697970	C	G	1311.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e+00;DB;DP=24;ExcessHet=3.9794;FS=8.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=0.029;SOR=0.152;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:345,0,323
chr4	186361876	rs4476640	A	G	2553.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=32;ExcessHet=3.9794;FS=4.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.76;ReadPosRankSum=-6.390e-01;SOR=1.256;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:515,0,382
chr4	186361976	rs7668543	T	C	253.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.91;SOR=4.174;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:190,15,0
chr4	186366315	rs2120414	T	C	2296.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=0.319;SOR=0.641;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:92:276,0,92
chr4	186366382	rs2120413	T	C	1692.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.188;SOR=0.700;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:283,0,197
chr4	186366809	rs6833872	C	T	1687.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=6.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.61;ReadPosRankSum=2.00;SOR=3.788;VQSLOD=14.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:66:173,0,66
chr4	186370956	rs6552881	G	C	2130.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.89;SOR=7.824;VQSLOD=24.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:439,30,0
chr4	186378790	rs4279261	T	C	1342.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=0.705;SOR=0.700;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:177,0,175
chr4	186379104	rs7664578	T	C	1379.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=15;ExcessHet=3.9794;FS=3.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=1.28;SOR=0.255;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:199,0,279
chr4	186379371	rs7687202	G	A	8281.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=0.708;VQSLOD=18.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2578,252,0
chr4	186379735	rs6827370	T	C	3827.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.331;DB;DP=133;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-8.750e-01;SOR=0.701;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,60:133:99:1419,0,1862
chr4	186379899	rs35596415	G	C	4963.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=96;ExcessHet=1.5490;FS=0.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=-1.739e+00;SOR=0.580;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,56:96:99:1687,0,1053
chr4	186380243	rs59319722	A	C	3802.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=56;ExcessHet=1.5490;FS=0.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=0.242;SOR=0.839;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,23:56:99:688,0,962
chr4	186380295	rs36007437	A	G	4265.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.786e+00;DB;DP=71;ExcessHet=1.5490;FS=0.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=-1.601e+00;SOR=0.611;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,32:71:99:780,0,1136
chr4	186380515	rs11132306	G	A	5217.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.581e+00;DB;DP=116;ExcessHet=1.5490;FS=5.402;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.29;ReadPosRankSum=-4.500e-01;SOR=1.091;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,56:116:99:1481,0,1678
chr4	186380846	rs7698680	A	T	7703.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=187;ExcessHet=1.5490;FS=2.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.95;ReadPosRankSum=1.01;SOR=0.857;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,104:187:99:2463,0,2213
chr4	186381115	rs7699687	G	T	4745.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.301e+00;DB;DP=88;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=1.60;SOR=0.700;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,43:88:99:1221,0,1335
chr4	186381165	rs7699724	G	A	4824.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-02;DB;DP=85;ExcessHet=1.5490;FS=1.343;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.00;ReadPosRankSum=-1.496e+00;SOR=0.654;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,41:85:99:1196,0,1252
chr4	186381828	rs11132307	G	A	467.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=1.28;SOR=2.049;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:146,0,149
chr4	186381934	rs11132308	C	T	1012.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=24;ExcessHet=1.5490;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-8.410e-01;SOR=1.133;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:394,0,248
chr4	186382206	rs11132309	A	G	2479.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DB;DP=104;ExcessHet=1.5490;FS=2.849;MQ=59.83;MQRankSum=0.702;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.744;SOR=0.976;VQSLOD=2.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,33:104:99:694,0,1888
chr4	186393080	rs113125267	ACG	A	1438.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.160e-01;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.14;ReadPosRankSum=0.511;SOR=2.476;VQSLOD=6.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,16:17:10:628,10,0
chr4	186423637	rs4635850	G	A	2114.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.220e-01;DB;DP=86;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-7.750e-01;SOR=0.713;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,46:86:99:1303,0,1052
chr4	186423677	rs10866276	G	A	1384.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.766;DB;DP=52;ExcessHet=3.9794;FS=0.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.493;SOR=0.572;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:774,0,681
chr4	186427841	rs2306705	T	C	3320.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.210e+00;DB;DP=102;ExcessHet=6.9897;FS=1.932;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-5.070e-01;SOR=0.532;VQSLOD=6.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,42:102:99:1097,0,1838
chr4	186427871	rs2306706	A	G	2270.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.482e+00;DB;DP=62;ExcessHet=3.9794;FS=1.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.57;ReadPosRankSum=1.50;SOR=1.449;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,35:62:99:1165,0,891
chr4	186444235	rs6552891	T	C	361.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.85;ReadPosRankSum=-5.240e-01;SOR=0.793;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:27:27,0,151
chr4	186444265	rs10595665	CTG	C	238.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=-4.800e-01;SOR=0.223;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:99:108,0,252
chr4	186444698	rs4862543	A	C	2069.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=-5.710e-01;SOR=1.022;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,16:29:99:0|1:186444698_A_C:607,0,489:186444698
chr4	186444704	rs4861669	C	T	1519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.559e+00;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=-7.820e-01;SOR=0.880;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,15:27:99:0|1:186444698_A_C:607,0,489:186444698
chr4	186444722	rs10641473	A	AT,ATT	1184.54	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=7.328;VQSLOD=6.41;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,7,5:14:99:393,153,111,169,0,144
chr4	186444769	rs11362426	TC	T	246.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.842;SOR=1.473;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:66:98,0,66
chr4	186456617	rs4862545	A	G	18933.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.22;SOR=2.905;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5764,489,0
chr4	186528172	rs13117637	G	A	738.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.31;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=0.112;SOR=1.473;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr4	186528433	rs13144963	T	C	9030.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.980e-01;DB;DP=122;ExcessHet=3.0103;FS=1.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=0.050;SOR=0.895;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:3426,364,0
chr4	186541301	rs61753946	A	G	1965.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.510e-01;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.88;ReadPosRankSum=-1.135e+00;SOR=0.426;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,57:58:99:1982,132,0
chr4	186544879	rs61910743	G	C	2787.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.960e-01;DB;DP=216;ExcessHet=3.0103;FS=1.645;MQ=60.00;MQRankSum=0.00;QD=12.90;ReadPosRankSum=-8.010e-01;SOR=0.812;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,107:216:99:2796,0,2942
chr4	186551624	rs1471794	T	G	785.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=30;ExcessHet=3.9794;FS=6.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.812;SOR=1.781;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:462,0,399
chr4	186567600	rs11934115	T	C	86.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=4.57;SOR=5.994;VQSLOD=5.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0
chr4	186568273	rs2306709	G	A	141.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.54;ReadPosRankSum=1.28;SOR=1.329;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:150,0,65
chr4	186568566	.	CT	C	224.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DP=21;ExcessHet=6.9897;FS=9.623;MQ=59.95;MQRankSum=0.00;QD=3.68;ReadPosRankSum=0.029;SOR=0.111;VQSLOD=2.56;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,4:21:19:19,0,306
chr4	186569283	.	GT	G	90.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.450e-01;DP=10;ExcessHet=3.9794;FS=2.046;MQ=60.00;MQRankSum=0.00;QD=4.10;ReadPosRankSum=0.303;SOR=0.223;VQSLOD=5.43;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,4:10:81:81,0,131
chr4	186570521	rs7663196	C	T	62.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr4	186570855	rs7663827	C	A	271.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700e-01;DB;DP=35;ExcessHet=3.0103;FS=5.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.75;ReadPosRankSum=1.20;SOR=0.200;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,12:35:99:280,0,630
chr4	186572791	rs4862557	C	T	2363.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.43;SOR=3.947;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:674,57,0
chr4	186583622	rs4327531	G	T	544.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=5.283;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr4	186599351	rs4407549	C	T	889.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=-7.280e-01;SOR=4.174;VQSLOD=14.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:282,21,0
chr4	186606135	rs72700110	C	T	737.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009e+00;DB;DP=27;ExcessHet=3.9794;FS=5.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.43;ReadPosRankSum=0.999;SOR=0.184;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:496,0,318
chr4	186611819	rs79427853	A	G	954.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-01;DB;DP=24;ExcessHet=3.9794;FS=0.835;MQ=59.95;MQRankSum=0.895;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.469;SOR=0.546;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,10:24:99:265,0,401
chr4	186997643	rs1568358	C	G	1830.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.72;SOR=6.138;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:338,24,0
chr4	186997767	rs3775296	C	A	1513.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=49;ExcessHet=3.9794;FS=2.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=0.142;SOR=0.986;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,19:49:99:499,0,759
chr4	186998271	rs75678105	A	G	1010.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.08;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.43;ReadPosRankSum=0.494;SOR=0.784;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,18:32:99:524,0,428
chr4	187000256	rs5743312	C	T	200.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=0.921;SOR=0.693;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:66:209,0,66
chr4	187003339	rs1996594	G	A	48.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.28;MQRankSum=0.319;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=6.09;ReadPosRankSum=1.24;SOR=0.169;VQSLOD=-2.420e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,2:8:56:56,0,245
chr4	187004217	rs3775290	C	T	1020.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=56;ExcessHet=3.0103;FS=2.277;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=1.17;SOR=0.446;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,34:56:99:1029,0,545
chr4	187005376	rs6830345	T	C	2495.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.58;SOR=3.947;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:187005376_T_C:812,60,0:187005376
chr4	187005379	rs141759307	C	CT	105.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.10;ReadPosRankSum=-1.189e+00;SOR=0.551;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:187005376_T_C:114,0,144:187005376
chr4	187005865	rs73873710	C	T	4056.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.600e-02;DB;DP=98;ExcessHet=6.9897;FS=3.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=1.56;SOR=0.531;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,52:98:99:1290,0,1058
chr4	187026558	rs115055267	C	T	127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.530e-01;DB;DP=9;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;QD=14.14;ReadPosRankSum=-9.360e-01;SOR=0.148;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:136,0,155
chr4	187070153	rs66949548	GGTGTGT	G	163.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=8.451;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=3.236;VQSLOD=0.532;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr4	187072887	rs2276916	A	G	290.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=15;ExcessHet=3.0103;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=1.49;SOR=3.056;VQSLOD=16.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:299,0,177
chr4	187072932	rs2276914	A	G	4104.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=32.32;SOR=2.321;VQSLOD=5.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1173,110,0
chr4	187073000	rs2276913	A	G	7971.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=1.241;VQSLOD=19.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2464,248,0
chr4	187073030	rs2276912	T	C	9090.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=0.934;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3042,297,0
chr4	187074833	rs4862650	A	G	2936.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=1.022;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1005,99,0
chr4	187075179	rs4862651	T	C	2130.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.66;SOR=3.575;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:577,48,0
chr4	187075296	rs6552956	G	A	651.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=1.061;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
chr4	187075394	rs6552957	A	G	336.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.60;SOR=2.093;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:353,27,0
chr4	187075474	rs6552958	G	A	3987.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.505;DB;DP=43;ExcessHet=3.0103;FS=1.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.69;ReadPosRankSum=-1.050e-01;SOR=0.584;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1334,126,0
chr4	187077027	rs55822915	C	T	225.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=-1.550e-01;SOR=0.495;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:234,0,311
chr4	187077206	rs4862653	A	G	9053.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.44;SOR=0.707;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2460,246,0
chr4	187077393	rs7670550	T	C	4099.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.200e-02;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=0.635;SOR=0.701;VQSLOD=6.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:696,0,862
chr4	187077437	rs13114283	G	A	1002.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=51;ExcessHet=3.9794;FS=0.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.787;SOR=0.544;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:637,0,638
chr4	187077508	rs62350489	G	A	336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=-7.140e-01;SOR=0.784;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:345,0,377
chr4	187078785	rs2276924	A	G	8079.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=0.693;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2652,252,0
chr4	187078819	rs2276923	C	G	802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=78;ExcessHet=3.0103;FS=1.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-2.480e-01;SOR=1.009;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,33:78:99:811,0,1054
chr4	187078866	rs2276922	C	T	3003.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.755;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.51;ReadPosRankSum=-6.070e-01;SOR=0.758;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:678,0,633
chr4	187078938	rs2276920	G	A	2131.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=28;ExcessHet=3.9794;FS=2.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.92;ReadPosRankSum=-4.460e-01;SOR=0.446;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:406,0,497
chr4	187079017	rs1877321	G	A	1222.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.452e+00;DB;DP=55;ExcessHet=3.9794;FS=0.926;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=1.92;SOR=0.498;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,23:55:99:607,0,1083
chr4	187079047	rs2276919	A	G	7524.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.488;DB;DP=83;ExcessHet=3.0103;FS=10.353;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=0.064;SOR=1.482;VQSLOD=18.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1152,0,944
chr4	187079384	rs13141433	C	T	348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.119;DB;DP=16;ExcessHet=3.0103;FS=2.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=-1.588e+00;SOR=1.139;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:357,0,128
chr4	187087886	rs56129279	GT	G	320.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=4.977;VQSLOD=6.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:182,18,0
chr4	187088665	.	CAAAA	C,CA	838.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=5.283;VQSLOD=6.07;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,3,4:9:44:296,103,82,71,0,44
chr4	187093018	rs4241814	G	T	625.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150e-01;DB;DP=14;ExcessHet=3.9794;FS=5.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=0.183;SOR=2.494;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,12:14:46:401,0,46
chr4	187111692	rs28545770	G	A	270.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.85;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:73,0,29
chr4	187111822	rs10001084	C	G	5085.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.60;SOR=2.192;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1811,159,0
chr4	187112090	rs6813815	C	T	12481.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.180e+00;DB;DP=161;ExcessHet=3.0103;FS=1.508;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=-1.910e+00;SOR=0.754;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,161:161:99:4957,483,0
chr4	187112141	rs6813694	A	C	18058.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=162;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.51;SOR=0.919;VQSLOD=18.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,162:162:99:5476,486,0
chr4	187112310	rs35641294	G	A	3126.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.338e+00;DB;DP=281;ExcessHet=3.0103;FS=0.913;MQ=59.98;MQRankSum=0.935;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=1.05;SOR=0.621;VQSLOD=1.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:151,130:281:99:3135,0,3940
chr4	187112347	rs146592367	C	CGTT	31338.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=244;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=27.92;SOR=0.936;VQSLOD=5.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,244:244:99:11053,746,0
chr4	187112394	rs6814261	A	T	3026.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647e+00;DB;DP=241;ExcessHet=3.0103;FS=0.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.546;SOR=0.681;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,113:241:99:3035,0,3704
chr4	187112457	rs13102719	T	C	27650.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=333;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.69;SOR=0.727;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,333:333:99:9936,998,0
chr4	187112629	rs7663027	G	C	7928.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DB;DP=162;ExcessHet=1.5490;FS=7.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.18;ReadPosRankSum=0.970;SOR=1.158;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,83:162:99:2217,0,1980
chr4	187112682	rs7662717	A	C	7197.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=8.287;VQSLOD=23.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2294,184,0
chr4	187112826	rs2241819	A	G	536.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=17;ExcessHet=3.9794;FS=8.557;MQ=60.00;MQRankSum=0.00;QD=18.49;ReadPosRankSum=1.28;SOR=0.810;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,8:17:99:0|1:187112826_A_G:280,0,323:187112826
chr4	187112832	rs1398007	C	T	337.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=16;ExcessHet=3.9794;FS=9.558;MQ=60.00;MQRankSum=0.00;QD=13.48;ReadPosRankSum=-7.700e-01;SOR=1.901;VQSLOD=16.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:1|0:187112826_A_G:212,0,312:187112826
chr4	187113041	rs1055138	C	G	3553.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.180e-01;DB;DP=81;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=-2.040e-01;SOR=0.642;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,38:81:99:983,0,1103
chr4	187115632	rs10013653	C	A	3424.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.696e+00;DB;DP=59;ExcessHet=3.9794;FS=3.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.266;SOR=1.002;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,27:59:99:596,0,863
chr4	187115841	rs7682918	C	T	2345.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=49;ExcessHet=1.5490;FS=0.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=-9.960e-01;SOR=0.823;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,18:49:99:435,0,764
chr4	187115945	rs7683424	G	A	485.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=10;ExcessHet=1.5490;FS=4.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.30;ReadPosRankSum=-3.190e-01;SOR=2.833;VQSLOD=19.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:93:93,0,230
chr4	187118040	rs112367913	TTC	T	787.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=5;ExcessHet=3.0103;FS=3.655;MQ=60.00;MQRankSum=0.00;QD=27.16;ReadPosRankSum=0.344;SOR=2.387;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr4	187118662	rs4862662	G	T	3402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.690e-01;DB;DP=133;ExcessHet=3.9794;FS=0.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-1.850e-01;SOR=0.767;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,65:133:99:1432,0,1596
chr4	187118941	rs370241301	TTATG	T	184.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=1.65;SOR=0.693;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,182
chr4	187120211	rs13146272	C	A	3134.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.808e+00;DB;DP=64;ExcessHet=1.5490;FS=1.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=0.071;SOR=0.486;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,37:64:99:869,0,680
chr4	187122304	rs3817184	C	T	1207.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.383;DB;DP=46;ExcessHet=3.9794;FS=0.876;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.900;SOR=0.572;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,26:46:99:778,0,512
chr4	187122319	rs3736455	T	G	2209.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.186e+00;DB;DP=54;ExcessHet=6.9897;FS=1.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=0.175;SOR=0.559;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,28:54:99:764,0,646
chr4	187122355	rs3736456	T	C	727.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=64;ExcessHet=3.0103;FS=2.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=-2.700e-02;SOR=0.541;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,29:64:99:736,0,829
chr4	187130198	rs2276918	A	G	3876.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=117;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=-5.710e-01;SOR=0.682;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,55:117:99:1618,0,1666
chr4	187131504	rs2102575	G	A	691	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.70;SOR=5.784;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:167,12,0
chr4	187149540	rs1912826	G	A	1056.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=-1.690e-01;SOR=1.179;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:427,39,0
chr4	187153775	rs4253244	C	A	242.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=3.912;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	187153786	rs4241818	T	C	199.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=3.912;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr4	187158034	rs3733402	G	A	6708.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.860e-01;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=-1.940e-01;SOR=0.718;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2694,271,0
chr4	187159282	rs4253256	G	C	1463.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.611e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=0.656;SOR=0.733;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:393,30,0
chr4	187171355	rs4253299	A	G	5053.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.00;SOR=1.402;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1258,123,0
chr4	187172280	rs2304595	G	A	464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=1.43;SOR=0.627;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:288,0,227
chr4	187172353	rs4253300	C	CT	837.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=45;ExcessHet=3.9794;FS=0.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-1.343e+00;SOR=0.550;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,24:45:99:584,0,490
chr4	187173546	rs4253303	G	A	234.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=1.33;SOR=0.321;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:187173546_G_A:101,0,223:187173546
chr4	187173571	rs4253304	G	C	222.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=1.10;SOR=0.693;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:77:0|1:187173546_G_A:77,0,147:187173546
chr4	187175722	rs2292423	T	A	411.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=17;ExcessHet=3.9794;FS=1.234;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.75;ReadPosRankSum=-1.950e-01;SOR=0.990;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:175,0,229
chr4	187178473	rs4253325	G	A	1075.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.338;SOR=0.695;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:315,0,385
chr4	187178599	rs4253326	C	T	1561.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=2.985;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:366,30,0
chr4	187178613	rs4253327	A	T	437.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-3.280e-01;SOR=1.445;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:79:79,0,103
chr4	187179210	rs925453	T	C	7856.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.584e+00;DB;DP=111;ExcessHet=3.0103;FS=5.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=0.227;SOR=0.416;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3238,333,0
chr4	187179486	rs3087505	A	G	1429.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.33;SOR=7.112;VQSLOD=23.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:341,24,0
chr4	187188141	rs35709976	G	GAT	886.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.18;SOR=4.615;VQSLOD=6.92;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr4	187188152	rs3822057	A	C	572.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.508;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=-9.520e-01;SOR=0.425;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:138,0,177
chr4	187195551	rs1593	T	A	404.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.05;SOR=4.804;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr4	187347954	rs13140715	T	C	132.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-1.282e+00;SOR=1.981;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:140,0,26
chr4	187454701	rs2165668	T	C	694.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=4.804;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:17:136,17,0
chr4	187455864	rs60023119	AG	A	1592.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.37;SOR=3.716;VQSLOD=6.19;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:140,12,0
chr4	187455946	rs6553008	T	C	545.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.11;ReadPosRankSum=-8.420e-01;SOR=0.990;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr4	187511304	rs11410853	G	GT	95.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.820e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.35;ReadPosRankSum=-8.300e-02;SOR=0.493;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:18:99:104,0,242
chr4	187511861	rs1973352	G	A	382.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DB;DP=50;ExcessHet=3.0103;FS=2.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.65;ReadPosRankSum=0.243;SOR=1.300;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,18:50:99:391,0,824
chr4	187513585	rs3775309	G	T	196.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.674;SOR=0.425;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,77
chr4	187513623	rs3836618	TA	T	139.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.180e+00;SOR=0.693;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:148,0,146
chr4	187516655	rs2306987	T	A	233.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.73;SOR=3.912;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:250,18,0
chr4	187516880	rs1298865	A	G	3752.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.000e-03;DB;DP=109;ExcessHet=6.9897;FS=0.876;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=-1.746e+00;SOR=0.762;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,61:109:99:1474,0,1142
chr4	187518976	rs2306990	C	T	1196.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.760e-01;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=0.880;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,31:62:99:0|1:187518976_C_T:1205,0,1818:187518976
chr4	187518980	rs1280096	T	C	5841.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117e+00;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=0.801;SOR=0.711;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,30:61:99:0|1:187518976_C_T:1205,0,1818:187518976
chr4	187519206	rs1280097	C	G	5273.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=0.793;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1561,144,0
chr4	187521037	rs10009030	C	A	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.43;ReadPosRankSum=-2.002e+00;SOR=0.425;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:237,0,333
chr4	187525020	rs2637777	A	C	4004.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.393e+00;DB;DP=91;ExcessHet=6.9897;FS=8.234;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.016;SOR=1.084;VQSLOD=5.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,37:91:99:882,0,1519
chr4	187525363	rs2304865	C	G	146.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=-4.310e-01;SOR=0.368;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:155,0,65
chr4	187527472	rs2584344	A	G	1636.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=38;ExcessHet=6.9897;FS=2.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.10;SOR=0.439;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:648,0,302
chr4	187530313	rs4862722	C	T	9298.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.190;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2863,273,0
chr4	187531022	rs28647489	A	G	829.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.295e+00;DB;DP=114;ExcessHet=3.0103;FS=1.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.27;ReadPosRankSum=0.925;SOR=0.499;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,42:114:99:838,0,1797
chr4	187534363	rs2249916	G	A	8561.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=222;ExcessHet=6.9897;FS=1.135;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-1.110e-01;SOR=0.595;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:122,100:222:99:2318,0,2977
chr4	187534542	rs2249926	T	A	3353.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DB;DP=93;ExcessHet=6.9897;FS=1.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=-8.200e-02;SOR=0.545;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,34:93:99:906,0,1628
chr4	187534689	rs2584351	G	T	622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345e+00;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=6.000e-03;SOR=0.880;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:211,0,138
chr4	187538133	rs1280100	A	G	2323.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.147e+00;DB;DP=71;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-3.360e-01;SOR=0.661;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,35:71:99:778,0,926
chr4	187538942	rs1280098	T	G	7478.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=164;ExcessHet=6.9897;FS=1.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.74;ReadPosRankSum=-9.580e-01;SOR=0.816;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,87:164:99:2373,0,1811
chr4	187542755	rs28489116	T	C	1318.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.880;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.597;SOR=0.641;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,48:106:99:1327,0,1678
chr4	187542955	.	T	C	1150.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.428;DP=82;ExcessHet=3.0103;FS=0.872;MQ=60.00;MQRankSum=0.00;QD=14.03;ReadPosRankSum=-2.850e-01;SOR=0.881;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,46:82:99:1159,0,855
chr4	187542986	rs28423024	G	C	1035.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=68;ExcessHet=3.0103;FS=0.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=1.07;SOR=0.892;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,40:68:99:1044,0,610
chr4	187557893	rs328418	T	C	7038.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.568e+00;DB;DP=156;ExcessHet=6.9897;FS=1.738;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-4.800e-02;SOR=0.575;VQSLOD=6.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,86:156:99:2161,0,1803
chr4	187558187	rs3830339	CA	C	970.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.395;SOR=1.414;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:215,0,254
chr4	187561080	rs10001377	A	G	472.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=-9.370e-01;SOR=1.863;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,13:18:99:481,0,121
chr4	187584771	rs172903	C	G	4881.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=1.414;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1448,141,0
chr4	187627659	rs200130748	TA	T	560.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.120e-01;DB;DP=33;ExcessHet=6.9897;FS=8.332;MQ=59.84;MQRankSum=0.00;QD=5.44;ReadPosRankSum=0.480;SOR=0.200;VQSLOD=3.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,8:33:99:150,0,390
chr4	187627792	rs11939575	T	C	12759.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.82;SOR=1.051;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3311,323,0
chr4	187628036	.	T	C	1212.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.198;DP=120;ExcessHet=3.0103;FS=2.397;MQ=59.88;MQRankSum=0.848;QD=10.10;ReadPosRankSum=-2.700e-02;SOR=0.463;VQSLOD=0.607;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:71,49:120:99:1221,0,1868
chr4	187628398	rs1877731	C	G	12444.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.77;ReadPosRankSum=-5.900e-02;SOR=0.600;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4328,375,0
chr4	187629140	rs367863	G	C	6795.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.093e+00;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=-7.440e-01;SOR=0.648;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2348,204,0
chr4	187629497	rs458021	G	A	8890.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.10;SOR=0.730;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3602,341,0
chr4	187629538	rs3733413	C	T	3159.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.52;SOR=0.916;VQSLOD=19.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3176,318,0
chr4	187629770	rs3733414	A	C	2463.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.74;SOR=0.720;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2480,219,0
chr4	189012680	rs17881718	G	A	1546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=133;ExcessHet=3.0103;FS=0.655;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=0.227;SOR=0.800;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,58:133:99:1555,0,1914
chr4	189012728	rs2279550	G	C	12364.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=180;ExcessHet=3.9794;FS=0.574;MQ=59.99;MQRankSum=0.968;POSITIVE_TRAIN_SITE;QD=21.28;ReadPosRankSum=1.55;SOR=0.770;VQSLOD=2.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:94,86:180:99:2220,0,2338
chr4	189019277	.	GA	G	318.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.980e-01;DP=21;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=6.78;ReadPosRankSum=-2.290e-01;SOR=0.661;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,7:21:95:95,0,207
chr4	189060431	rs11938607	T	C	533.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.972e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.21;ReadPosRankSum=-5.600e-02;SOR=1.426;VQSLOD=23.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:314,24,0
chr4	189060610	rs11934889	G	C	1819.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.18;DB;DP=32;ExcessHet=1.5490;FS=1.975;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.75;ReadPosRankSum=-6.320e-01;SOR=0.734;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1165,96,0
chr4	189061036	rs76826594	C	T	1499.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.970e-01;DB;DP=119;ExcessHet=3.0103;FS=0.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.60;ReadPosRankSum=-7.670e-01;SOR=0.660;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,63:119:99:1508,0,1400
chr4	189061106	rs13131525	G	A	2826.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.447e+00;DB;DP=106;ExcessHet=3.9794;FS=3.131;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=0.291;SOR=0.492;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,54:106:99:1273,0,1386
chr4	189061169	rs56361162	C	T	649.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=65;ExcessHet=3.0103;FS=3.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.99;ReadPosRankSum=1.15;SOR=1.258;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,25:65:99:658,0,908
chr4	189061223	rs13131409	C	T	1310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426e+00;DB;DP=29;ExcessHet=3.9794;FS=1.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=0.921;SOR=1.217;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:508,0,457
chr4	189061288	rs12643199	G	T	814.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.852;DB;DP=10;ExcessHet=3.9794;FS=2.486;MQ=60.00;MQRankSum=0.00;QD=21.45;ReadPosRankSum=0.00;SOR=2.049;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:29:310,29,0
chr4	189061604	rs56412251	C	T	362.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.684e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=1.12;SOR=0.541;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:371,0,620
chr4	189061675	rs113738610	A	AT	920.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.070e-01;DB;DP=70;ExcessHet=3.0103;FS=1.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-1.380e+00;SOR=0.488;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,32:70:99:929,0,1146
chr4	189061855	rs11316189	G	GA	1771.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=52;ExcessHet=3.9794;FS=3.458;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=0.065;SOR=0.435;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,22:52:99:444,0,690
chr4	189063361	rs10602321	C	CGTGT	755.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.66;SOR=3.258;VQSLOD=4.79;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr4	189064828	rs9784562	T	C	1236.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.112e+00;DB;DP=35;ExcessHet=3.9794;FS=2.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=1.03;SOR=0.444;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:538,0,497
chr4	189064952	rs28463290	C	G	2881.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.605;DB;DP=143;ExcessHet=3.9794;FS=0.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-8.120e-01;SOR=0.714;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,70:143:99:1688,0,1724
chr4	189065104	rs9784566	T	G	2842.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.47;DB;DP=39;ExcessHet=3.9794;FS=0.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=-1.140e-01;SOR=0.795;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1550,117,0
chr4	189065435	rs34012483	C	T	727.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.608e+00;DB;DP=18;ExcessHet=3.9794;FS=4.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=1.43;SOR=2.055;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:326,0,280
chr4	189065441	rs11940227	G	T	2362.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=17;ExcessHet=3.0103;FS=9.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.28;ReadPosRankSum=1.61;SOR=2.833;VQSLOD=15.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:724,51,0
chr4	189065517	rs11384386	C	CTT	331.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=59.58;MQRankSum=0.00;QD=16.59;ReadPosRankSum=-9.670e-01;SOR=1.721;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:27:61,0,27
chr4	190329166	rs10622647	G	GCACACA,GCACACACA	5036.50	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.18;DB;DP=42;ExcessHet=3.0103;FS=8.291;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.57;ReadPosRankSum=-1.027e+00;SOR=3.143;VQSLOD=4.39;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,4,34:42:30:1283,901,1017,107,0,30
chr4	190394821	rs12504268	C	T	44.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.43;ReadPosRankSum=-4.930e-01;SOR=0.446;VQSLOD=22.66;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:53:53,0,216
chr4	190395072	rs12511992	A	G	504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=47;ExcessHet=3.0103;FS=8.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-4.630e-01;SOR=1.698;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:513,0,631
chr4	190396220	.	G	A	2193.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.020e+00;DP=148;ExcessHet=3.0103;FS=2.972;MQ=60.00;MQRankSum=0.00;QD=14.82;ReadPosRankSum=0.593;SOR=0.488;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,80:148:99:2202,0,1964
chr4	190860728	rs112808100	T	C	66.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.701e+00;DB;DP=13;ExcessHet=3.9794;FS=5.213;MQ=56.45;MQRankSum=1.06;NEGATIVE_TRAIN_SITE;QD=2.13;ReadPosRankSum=1.88;SOR=0.036;VQSLOD=-1.601e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,2:13:10:10,0,410
chr4	190860900	rs375414464	A	C	3626.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=208;ExcessHet=3.9794;FS=8.003;MQ=59.67;MQRankSum=-2.245e+00;NEGATIVE_TRAIN_SITE;QD=9.93;ReadPosRankSum=-4.982e+00;SOR=0.413;VQSLOD=-3.585e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:149,59:208:99:0|1:190860900_A_C:2104,0,6129:190860900
chr4	190860904	rs72722531	C	T	3814.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.670e-01;DB;DP=218;ExcessHet=3.9794;FS=4.436;MQ=59.43;MQRankSum=-3.189e+00;NEGATIVE_TRAIN_SITE;QD=10.04;ReadPosRankSum=-5.422e+00;SOR=0.493;VQSLOD=-4.257e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:156,62:218:99:0|1:190860900_A_C:2145,0,6270:190860900
chr4	190860905	.	G	A	530.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306e+00;DP=214;ExcessHet=3.0103;FS=2.635;MQ=59.73;MQRankSum=-3.609e+00;NEGATIVE_TRAIN_SITE;QD=2.48;ReadPosRankSum=-3.031e+00;SOR=0.443;VQSLOD=-3.076e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:185,29:214:99:539,0,7391
chr4	190860928	rs79323921	C	G	3030.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e+00;DB;DP=251;ExcessHet=6.9897;FS=5.750;MQ=59.41;MQRankSum=-5.512e+00;QD=4.98;ReadPosRankSum=1.84;SOR=1.234;VQSLOD=-3.897e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:181,70:251:99:0|1:190860928_C_G:2428,0,7273:190860928
chr4	190860929	rs77212302	A	G	3024.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DB;DP=251;ExcessHet=6.9897;FS=5.778;MQ=59.35;MQRankSum=-5.762e+00;QD=4.94;ReadPosRankSum=1.73;SOR=1.292;VQSLOD=-3.972e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:180,71:251:99:0|1:190860928_C_G:2425,0,7295:190860928
chr4	190860997	rs201836156	C	T	187.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270e+00;DB;DP=208;ExcessHet=3.0103;FS=1.597;MQ=59.10;MQRankSum=-2.318e+00;NEGATIVE_TRAIN_SITE;QD=0.90;ReadPosRankSum=-1.745e+00;SOR=0.495;VQSLOD=-2.072e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:178,30:208:99:196,0,5053
chr4	190861014	rs79922259	T	A	2646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.010e-01;DB;DP=193;ExcessHet=6.9897;FS=12.748;MQ=58.95;MQRankSum=-5.743e+00;QD=6.23;ReadPosRankSum=1.58;SOR=0.314;VQSLOD=-3.772e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:128,65:193:99:0|1:190861014_T_A:2255,0,5116:190861014
chr4	190861017	rs79339289	C	T	2620.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.410e+00;DB;DP=191;ExcessHet=6.9897;FS=13.267;MQ=58.92;MQRankSum=-5.605e+00;QD=6.32;ReadPosRankSum=1.49;SOR=0.218;VQSLOD=-3.709e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:128,63:191:99:0|1:190861014_T_A:2211,0,5162:190861014
chr4	190861090	rs75609331	A	G	872.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.310e-01;DB;DP=53;ExcessHet=6.9897;FS=1.341;MQ=55.91;MQRankSum=-5.162e+00;QD=5.60;ReadPosRankSum=1.69;SOR=1.010;VQSLOD=-4.923e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,8:53:99:105,0,1579
chr4	190861125	rs73024904	C	T	856.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.204e+00;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=54.53;MQRankSum=-4.618e+00;NEGATIVE_TRAIN_SITE;QD=9.12;ReadPosRankSum=2.74;SOR=0.572;VQSLOD=-4.893e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,7:33:99:160,0,1054
chr4	190861128	rs75250656	G	T	992.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331e+00;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=54.22;MQRankSum=-4.434e+00;NEGATIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=2.29;SOR=0.850;VQSLOD=-4.315e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,7:32:99:225,0,835
chr4	190861151	.	C	T	37.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.605e+00;DP=22;ExcessHet=3.9794;FS=0.000;MQ=52.81;MQRankSum=1.04;NEGATIVE_TRAIN_SITE;QD=0.86;ReadPosRankSum=0.801;SOR=0.064;VQSLOD=-3.168e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,2:22:21:0|1:190861142_G_A:21,0,873:190861142
chr4	190861156	rs79596514	G	A	657.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.829e+00;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=52.44;MQRankSum=-4.056e+00;NEGATIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=-2.900e-02;SOR=0.855;VQSLOD=-3.654e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:187,0,539
chr4	190861991	rs2272596	C	A	136.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.02;MQRankSum=-2.520e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=2.44;ReadPosRankSum=0.437;SOR=0.426;VQSLOD=-1.603e-01;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,3:24:63:0|1:190861991_C_A:63,0,873:190861991
chr4	190861995	rs116107255	G	C	130.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.05;MQRankSum=-2.520e+00;NEGATIVE_TRAIN_SITE;QD=2.26;ReadPosRankSum=0.611;SOR=0.458;VQSLOD=-1.918e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,3:24:60:0|1:190861991_C_A:60,0,906:190861991
chr4	190861998	.	C	G	133.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.936;DP=25;ExcessHet=6.9897;FS=0.000;MQ=59.06;MQRankSum=-2.585e+00;NEGATIVE_TRAIN_SITE;QD=2.27;ReadPosRankSum=0.879;SOR=0.443;VQSLOD=-2.000e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,3:25:60:0|1:190861991_C_A:60,0,906:190861991
chr4	190862022	rs68064070	G	A	63.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.020e-01;DB;DP=35;ExcessHet=6.9897;FS=0.000;MQ=59.27;MQRankSum=-3.163e+00;NEGATIVE_TRAIN_SITE;QD=0.79;ReadPosRankSum=1.48;SOR=0.532;VQSLOD=-2.602e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,3:35:30:0|1:190862022_G_A:30,0,1335:190862022
chr4	190862027	.	G	A	39.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DP=36;ExcessHet=3.9794;FS=1.713;MQ=59.48;MQRankSum=-3.216e+00;NEGATIVE_TRAIN_SITE;QD=0.47;ReadPosRankSum=2.15;SOR=0.958;VQSLOD=-3.130e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,3:36:24:0|1:190862022_G_A:24,0,1419:190862022
chr4	190862239	rs202227709	G	C	249.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DB;DP=91;ExcessHet=3.9794;FS=11.018;MQ=58.50;MQRankSum=-3.288e+00;NEGATIVE_TRAIN_SITE;QD=1.83;ReadPosRankSum=-8.340e-01;SOR=2.319;VQSLOD=-3.586e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:84,7:91:83:0|1:190862239_G_C:83,0,3465:190862239
chr4	190862242	rs79852642	T	C	291.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DB;DP=88;ExcessHet=3.9794;FS=13.241;MQ=58.48;MQRankSum=-3.332e+00;NEGATIVE_TRAIN_SITE;QD=2.17;ReadPosRankSum=-9.950e-01;SOR=2.468;VQSLOD=-3.929e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:80,8:88:83:0|1:190862239_G_C:83,0,3465:190862239
chr4	190862243	rs76563908	G	C	297.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=87;ExcessHet=3.9794;FS=15.472;MQ=58.48;MQRankSum=-3.116e+00;NEGATIVE_TRAIN_SITE;QD=2.22;ReadPosRankSum=-8.160e-01;SOR=2.621;VQSLOD=-4.234e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:79,8:87:89:0|1:190862239_G_C:89,0,3397:190862239
chr4	190862341	rs112277752	C	T	758.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=29;ExcessHet=6.9897;FS=2.876;MQ=56.00;MQRankSum=-9.380e-01;NEGATIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=0.675;SOR=0.172;VQSLOD=-2.448e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:400,0,506
chr4	190862367	rs199831710	G	T	633.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.909e+00;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=55.76;MQRankSum=-1.153e+00;NEGATIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=-2.640e-01;SOR=0.180;VQSLOD=-2.784e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:376,0,464
chr4	190862376	rs75907369	G	A	1009.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.663e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=56.99;MQRankSum=-1.037e+00;QD=18.70;ReadPosRankSum=0.127;SOR=0.624;VQSLOD=-1.764e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,9:19:99:0|1:190862376_G_A:348,0,388:190862376
chr4	190862387	rs79094331	C	T	748.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=58.21;MQRankSum=0.00;QD=15.93;ReadPosRankSum=0.739;SOR=0.446;VQSLOD=-7.737e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,7:16:99:0|1:190862376_G_A:267,0,357:190862376
chr4	190862392	rs72722542	T	C	709.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=58.55;MQRankSum=0.00;QD=16.13;ReadPosRankSum=0.105;SOR=0.465;VQSLOD=-5.584e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,6:15:99:0|1:190862376_G_A:225,0,350:190862376
chr4	190862419	.	G	A	181.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.064e+00;DP=8;ExcessHet=6.9897;FS=0.000;MQ=57.68;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=-1.242e+00;SOR=0.105;VQSLOD=-1.719e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:66:0|1:190862419_G_A:66,0,240:190862419
chr4	190862421	rs76626470	G	T	181.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=57.53;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=-1.282e+00;SOR=0.127;VQSLOD=-1.791e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,2:7:66:0|1:190862419_G_A:66,0,240:190862419
chr4	190862881	rs4863304	A	T	887.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=42;ExcessHet=6.9897;FS=1.537;MQ=59.68;MQRankSum=0.00;QD=6.39;ReadPosRankSum=-1.708e+00;SOR=0.308;VQSLOD=2.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,6:42:99:0|1:190862881_A_T:138,0,2079:190862881
chr4	190862897	rs142957898	A	T	769.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.212e+00;DB;DP=55;ExcessHet=6.9897;FS=2.568;MQ=59.76;MQRankSum=0.00;QD=4.14;ReadPosRankSum=-7.210e-01;SOR=0.338;VQSLOD=3.27;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,6:55:99:0|1:190862881_A_T:140,0,3086:190862881
chr4	190862917	.	A	G	2011.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DP=72;ExcessHet=6.9897;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=8.05;ReadPosRankSum=-8.350e-01;SOR=0.657;VQSLOD=4.30;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,13:72:99:0|1:190862881_A_T:368,0,3696:190862881
chr4	190862930	.	AGC	A	1687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.480e-01;DP=91;ExcessHet=6.9897;FS=1.984;MQ=59.93;MQRankSum=0.00;QD=5.48;ReadPosRankSum=0.287;SOR=0.846;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:76,15:91:99:0|1:190862881_A_T:389,0,5277:190862881
chr4	190862934	.	T	TTC	2015.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-02;DP=94;ExcessHet=6.9897;FS=0.524;MQ=59.93;MQRankSum=0.00;QD=6.81;ReadPosRankSum=-1.276e+00;SOR=0.762;VQSLOD=5.25;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:79,15:94:99:0|1:190862881_A_T:431,0,5308:190862881
chr4	190862941	rs149504757	A	AG	3259.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-01;DB;DP=100;ExcessHet=6.9897;FS=0.479;MQ=59.88;MQRankSum=0.00;QD=9.62;ReadPosRankSum=-4.000e-01;SOR=0.757;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:81,19:100:99:0|1:190862881_A_T:605,0,5443:190862881
chr4	190862948	rs201245515	A	G	2180.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.035;DB;DP=108;ExcessHet=6.9897;FS=2.248;MQ=59.89;MQRankSum=0.00;QD=5.83;ReadPosRankSum=-5.460e-01;SOR=0.839;VQSLOD=4.18;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:86,22:108:99:0|1:190862881_A_T:618,0,5535:190862881
chr4	190863011	rs180725696	G	A	4257.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.353e+00;DB;DP=139;ExcessHet=6.9897;FS=4.745;MQ=59.93;MQRankSum=0.00;QD=8.76;ReadPosRankSum=1.51;SOR=0.802;VQSLOD=4.99;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:115,24:139:99:0|1:190862998_G_GGTTGACT:659,0,6966:190862998
chr4	190863013	.	C	T	4248.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.174e+00;DP=140;ExcessHet=6.9897;FS=4.745;MQ=59.93;MQRankSum=0.00;QD=8.71;ReadPosRankSum=1.65;SOR=0.829;VQSLOD=4.93;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:116,24:140:99:0|1:190862998_G_GGTTGACT:659,0,6966:190862998
chr4	190863017	rs73876025	T	C	4109.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.576e+00;DB;DP=136;ExcessHet=6.9897;FS=4.821;MQ=59.93;MQRankSum=0.00;QD=8.53;ReadPosRankSum=1.55;SOR=0.875;VQSLOD=4.96;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:113,23:136:99:0|1:190862998_G_GGTTGACT:623,0,6817:190862998
chr4	190863026	.	C	A	1838.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.999e+00;DP=135;ExcessHet=6.9897;FS=2.428;MQ=59.93;MQRankSum=0.00;QD=3.86;ReadPosRankSum=0.465;SOR=1.026;VQSLOD=4.12;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:114,21:135:99:0|1:190863026_C_A:469,0,6663:190863026
chr4	190863051	.	T	G	1351.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051e+00;DP=116;ExcessHet=6.9897;FS=4.075;MQ=59.97;MQRankSum=0.00;QD=3.14;ReadPosRankSum=-1.052e+00;SOR=1.139;VQSLOD=3.94;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:99,17:116:99:0|1:190863026_C_A:434,0,5405:190863026
chr4	190863070	.	T	A	945.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DP=109;ExcessHet=6.9897;FS=16.483;MQ=59.96;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=2.72;ReadPosRankSum=-3.002e+00;SOR=1.605;VQSLOD=-3.616e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:98,11:109:99:0|1:190863026_C_A:164,0,5101:190863026
chr4	190873011	.	A	T	78.61	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=33.72;SOR=0.693;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190873011_A_T:90,6,0:190873011
chr4	190873031	.	G	T	34.92	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.92;SOR=1.609;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:190873011_A_T:45,3,0:190873011
chr4	190873040	rs74514500	T	G	36.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=25.69;SOR=1.609;VQSLOD=18.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:190873011_A_T:45,3,0:190873011
chr4	190873047	rs79149437	C	G	36.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=31.21;SOR=1.609;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,1:1:3:1|1:190873011_A_T:45,3,0:190873011
chr4	190873184	rs12649534	A	G	697.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.45;ReadPosRankSum=-1.150e+00;SOR=3.056;VQSLOD=18.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:226,18,0
chr4	190873529	rs147572603	A	G	45.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.66;ReadPosRankSum=-3.190e-01;SOR=0.693;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:54:54,0,187
chr4	190873550	rs113392963	A	G	84.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.861;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=58.27;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=4.01;ReadPosRankSum=2.39;SOR=0.446;VQSLOD=-1.701e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:46:46,0,145
chr4	190873599	rs146141479	C	A	56.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.27;ReadPosRankSum=1.65;SOR=0.446;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,115
chr4	190873614	rs139326126	C	T	70.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.50;SOR=2.303;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr4	190873982	rs62345265	A	G	139.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550e-01;DB;DP=9;ExcessHet=4.7712;FS=0.000;MQ=52.43;MQRankSum=-1.732e+00;NEGATIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=0.00;SOR=0.784;VQSLOD=-3.220e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:64:0|1:190873974_G_T:64,0,275:190873974
chr4	190873998	rs200094694	G	A	97.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=51.33;MQRankSum=-1.981e+00;NEGATIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-9.920e-01;SOR=1.022;VQSLOD=-3.120e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,3:9:99:0|1:190873974_G_T:105,0,230:190873974
chr4	190874017	rs112064663	TACTC	T	543.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.182e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=48.23;MQRankSum=-7.430e-01;QD=13.95;ReadPosRankSum=0.394;SOR=0.892;VQSLOD=0.608;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,3:15:90:0|1:190874017_TACTC_T:90,0,520:190874017
chr4	190874036	rs201260521	A	G	159.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=47.22;MQRankSum=-1.525e+00;QD=5.49;ReadPosRankSum=2.42;SOR=0.082;VQSLOD=-3.552e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:137,0,346
chr4	190874045	rs62345266	T	C	889.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=15;ExcessHet=6.9897;FS=2.152;MQ=47.16;MQRankSum=-6.700e-02;QD=18.16;ReadPosRankSum=-2.270e-01;SOR=1.297;VQSLOD=-3.131e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,4:15:99:0|1:190874017_TACTC_T:129,0,487:190874017
chr4	190874089	rs62345274	A	G	870.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=27;ExcessHet=6.9897;FS=1.261;MQ=44.04;MQRankSum=0.403;QD=10.01;ReadPosRankSum=1.46;SOR=0.418;VQSLOD=-4.288e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,7:27:99:162,0,638
chr4	190874157	rs11736048	A	G	5319.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=83;ExcessHet=6.9897;FS=16.455;MQ=47.85;MQRankSum=-3.720e+00;QD=20.70;ReadPosRankSum=-5.740e-01;SOR=1.490;VQSLOD=-4.819e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,39:83:99:1469,0,1036
chr4	190874167	rs11727824	G	A	557.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.334e+00;DB;DP=90;ExcessHet=3.9794;FS=17.853;MQ=49.16;MQRankSum=-1.960e+00;QD=2.73;ReadPosRankSum=1.23;SOR=0.548;VQSLOD=-4.664e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,16:90:99:381,0,2676
chr4	190874175	rs62345275	A	G	2418.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.210e-01;DB;DP=101;ExcessHet=6.9897;FS=4.539;MQ=49.82;MQRankSum=-1.500e-02;NEGATIVE_TRAIN_SITE;QD=6.95;ReadPosRankSum=-2.340e-01;SOR=0.942;VQSLOD=-2.422e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,32:101:99:648,0,2467
chr4	190874199	rs201253927	T	A	1631.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.536e+00;DB;DP=122;ExcessHet=6.9897;FS=2.401;MQ=50.99;MQRankSum=-1.600e-02;NEGATIVE_TRAIN_SITE;QD=3.86;ReadPosRankSum=0.049;SOR=0.931;VQSLOD=-3.326e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:107,15:122:99:0|1:190874199_T_A:234,0,4496:190874199
chr4	190874206	rs199733955	T	A	1673.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=129;ExcessHet=6.9897;FS=3.436;MQ=51.17;MQRankSum=-3.500e-01;NEGATIVE_TRAIN_SITE;QD=3.78;ReadPosRankSum=-1.980e-01;SOR=1.026;VQSLOD=-2.894e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:112,17:129:99:0|1:190874199_T_A:266,0,4561:190874199
chr4	190874255	rs17425201	A	T	107.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=52.38;MQRankSum=0.597;NEGATIVE_TRAIN_SITE;QD=0.92;ReadPosRankSum=2.00;SOR=0.736;VQSLOD=-3.784e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:100,17:117:99:114,0,2778
chr4	190874256	rs201275486	C	T	303.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=113;ExcessHet=3.9794;FS=3.565;MQ=52.75;MQRankSum=-5.815e+00;QD=1.09;ReadPosRankSum=0.665;SOR=1.050;VQSLOD=-4.500e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:98,15:113:99:170,0,3325
chr4	190874290	rs111797658	T	A	115.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=80;ExcessHet=3.0103;FS=1.747;MQ=54.43;MQRankSum=1.03;NEGATIVE_TRAIN_SITE;QD=1.44;ReadPosRankSum=-3.370e-01;SOR=0.946;VQSLOD=-3.446e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:68,12:80:99:123,0,2162
chr4	190874315	rs200960860	T	G	3832.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=63;ExcessHet=6.9897;FS=0.000;MQ=53.85;MQRankSum=2.33;NEGATIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=-3.610e-01;SOR=0.667;VQSLOD=-3.151e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,30:63:99:1108,0,916
chr4	190874316	rs201769636	A	T	1986.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=62;ExcessHet=6.9897;FS=4.315;MQ=53.75;MQRankSum=1.44;NEGATIVE_TRAIN_SITE;QD=8.56;ReadPosRankSum=-1.600e-01;SOR=1.000;VQSLOD=-2.146e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,19:62:99:457,0,1561
chr4	190874385	rs62345276	G	A	577.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=51.80;MQRankSum=-2.881e+00;NEGATIVE_TRAIN_SITE;QD=21.40;ReadPosRankSum=-1.321e+00;SOR=1.609;VQSLOD=-1.939e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:190874370_CAG_C:117,0,117:190874370
chr4	190876192	rs200322789	A	C	1067.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=114;ExcessHet=6.9897;FS=4.301;MQ=51.03;MQRankSum=-5.269e+00;QD=3.28;ReadPosRankSum=0.673;SOR=1.014;VQSLOD=-3.689e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,20:114:99:306,0,3455
chr4	190876195	rs7684300	C	T	6935.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=116;ExcessHet=3.9794;FS=8.429;MQ=51.00;MQRankSum=-8.207e+00;POSITIVE_TRAIN_SITE;QD=20.10;ReadPosRankSum=-6.360e-01;SOR=1.090;VQSLOD=-1.658e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:68,48:116:99:1808,0,2730
chr4	190876196	rs17425208	G	A	321.85	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=117;ExcessHet=3.9794;FS=10.852;MQ=50.99;MQRankSum=-3.226e+00;NEGATIVE_TRAIN_SITE;QD=1.31;ReadPosRankSum=0.746;SOR=1.604;VQSLOD=-3.924e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,8:117:5:5,0,4564
chr4	190876319	rs77450681	A	T	3940.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=77;ExcessHet=6.9897;FS=0.598;MQ=50.83;MQRankSum=-6.044e+00;QD=16.77;ReadPosRankSum=-5.150e-01;SOR=0.802;VQSLOD=-4.077e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,46:77:99:1367,0,880
chr4	190876349	rs199599460	C	T	1719.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.814e+00;DB;DP=37;ExcessHet=6.9897;FS=2.396;MQ=50.64;MQRankSum=-3.194e+00;NEGATIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-7.580e-01;SOR=0.216;VQSLOD=-2.798e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:678,0,706
chr4	190876351	.	G	C	139.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DP=37;ExcessHet=3.9794;FS=0.000;MQ=49.53;MQRankSum=-1.762e+00;NEGATIVE_TRAIN_SITE;QD=1.99;ReadPosRankSum=-2.800e-02;SOR=0.020;VQSLOD=-3.237e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,4:37:70:0|1:190876351_G_C:70,0,1334:190876351
chr4	190876368	.	C	A	109.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.905e+00;DP=26;ExcessHet=3.9794;FS=0.000;MQ=48.01;MQRankSum=-1.356e+00;QD=2.32;ReadPosRankSum=-2.890e-01;SOR=0.019;VQSLOD=-3.318e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,2:26:54:0|1:190876351_G_C:54,0,999:190876351
chr4	190878380	rs11490091	T	A	1136.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.860;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=46.85;MQRankSum=-3.067e+00;QD=26.44;ReadPosRankSum=-1.560e-01;SOR=1.455;VQSLOD=-2.653e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:93:427,0,93
chr4	190878452	rs372664630	T	C	970.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.16;DB;DP=33;ExcessHet=6.9897;FS=4.591;MQ=47.31;MQRankSum=-2.092e+00;QD=6.89;ReadPosRankSum=1.47;SOR=1.954;VQSLOD=-3.326e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,6:33:99:0|1:190878452_T_C:171,0,1090:190878452
chr4	190878453	.	G	A	970.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407e+00;DP=33;ExcessHet=6.9897;FS=4.570;MQ=47.13;MQRankSum=-1.923e+00;QD=6.79;ReadPosRankSum=0.839;SOR=1.991;VQSLOD=-3.288e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,6:33:99:0|1:190878452_T_C:171,0,1090:190878452
chr4	190878512	rs12511235	A	G	939.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=52.81;MQRankSum=2.26;NEGATIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.100;SOR=0.663;VQSLOD=-3.418e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,11:37:99:332,0,862
chr4	190878563	rs137858630	C	A	1014.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.100e-01;DB;DP=226;ExcessHet=3.0103;FS=2.763;MQ=46.97;MQRankSum=-8.970e-01;QD=4.49;ReadPosRankSum=-3.266e+00;SOR=0.946;VQSLOD=-4.705e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:173,53:226:99:1021,0,5165
chr4	190878580	rs189762674	A	G	165.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=308;ExcessHet=3.9794;FS=0.879;MQ=45.52;MQRankSum=0.391;QD=0.26;ReadPosRankSum=-3.690e-01;SOR=0.787;VQSLOD=-4.742e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:277,31:308:76:76,0,10627
chr4	190878597	rs62345290	C	T	11698.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.552e+00;DB;DP=335;ExcessHet=6.9897;FS=4.051;MQ=45.57;MQRankSum=-5.230e+00;QD=10.91;ReadPosRankSum=0.255;SOR=0.749;VQSLOD=-3.551e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:165,170:335:99:3863,0,4428
chr4	190878654	rs78653319	C	G	2752.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.016e+00;DB;DP=417;ExcessHet=6.9897;FS=1.416;MQ=45.05;MQRankSum=-3.730e-01;QD=2.13;ReadPosRankSum=0.626;SOR=0.514;VQSLOD=-4.378e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:326,91:417:99:1031,0,11066
chr4	190878661	rs62345291	A	T	10955.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=416;ExcessHet=6.9897;FS=5.075;MQ=45.05;MQRankSum=-6.027e+00;QD=8.55;ReadPosRankSum=0.737;SOR=1.096;VQSLOD=-4.028e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:246,170:416:99:3248,0,7357
chr4	190878700	rs78503302	G	A	263.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761e+00;DB;DP=291;ExcessHet=3.0103;FS=0.680;MQ=46.27;MQRankSum=-9.430e-01;QD=0.91;ReadPosRankSum=1.38;SOR=0.606;VQSLOD=-4.335e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:253,38:291:99:0|1:190878700_G_A:271,0,10738:190878700
chr4	190878703	.	G	A	286.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DP=272;ExcessHet=3.0103;FS=1.488;MQ=46.23;MQRankSum=-9.420e-01;QD=1.05;ReadPosRankSum=0.637;SOR=0.542;VQSLOD=-4.219e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:234,38:272:99:0|1:190878700_G_A:295,0,10551:190878700
chr4	190878809	.	T	C	55.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DP=14;ExcessHet=3.9794;FS=0.000;MQ=55.75;MQRankSum=-3.065e+00;NEGATIVE_TRAIN_SITE;QD=1.99;ReadPosRankSum=1.45;SOR=0.100;VQSLOD=-4.003e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,1:14:3:0|1:190878809_T_C:3,0,537:190878809
chr4	190878815	.	C	G	52.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DP=12;ExcessHet=3.9794;FS=0.000;MQ=57.66;MQRankSum=-3.015e+00;NEGATIVE_TRAIN_SITE;QD=2.50;ReadPosRankSum=2.16;SOR=0.027;VQSLOD=-3.313e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,1:12:6:0|1:190878809_T_C:6,0,495:190878809
chr4	190878827	rs2293867	T	G	469.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=57.33;MQRankSum=-3.015e+00;NEGATIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=1.74;SOR=0.197;VQSLOD=-2.524e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,1:12:9:0|1:190878827_T_G:9,0,459:190878827
chr4	190878840	.	A	G	88.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.377e+00;DP=11;ExcessHet=3.9794;FS=0.000;MQ=57.12;MQRankSum=-2.846e+00;NEGATIVE_TRAIN_SITE;QD=5.50;ReadPosRankSum=1.74;SOR=0.042;VQSLOD=-3.185e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,1:11:12:12,0,367
chr4	190878855	rs74198508	G	C	100.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=56.45;MQRankSum=-1.465e+00;NEGATIVE_TRAIN_SITE;QD=6.68;ReadPosRankSum=0.792;SOR=0.067;VQSLOD=-2.859e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,1:7:21:0|1:190878827_T_G:21,0,291:190878827
chr4	190881997	rs77084305	A	G	2100.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.718e+00;DB;DP=25;ExcessHet=6.9897;FS=3.465;MQ=35.95;MQRankSum=-2.885e+00;QD=21.22;ReadPosRankSum=0.230;SOR=0.280;VQSLOD=-5.127e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,13:25:99:0|1:190881992_T_C:510,0,748:190881992
chr4	190882909	rs78046499	T	C	57.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=52.79;MQRankSum=-1.259e+00;NEGATIVE_TRAIN_SITE;QD=2.29;ReadPosRankSum=1.47;SOR=0.120;VQSLOD=-3.346e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:42:42,0,174
chr4	190882971	.	T	C	97.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.050e-01;DP=27;ExcessHet=3.9794;FS=1.761;MQ=55.61;MQRankSum=-1.748e+00;NEGATIVE_TRAIN_SITE;QD=1.41;ReadPosRankSum=1.42;SOR=0.246;VQSLOD=-3.687e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,3:27:54:0|1:190882971_T_C:54,0,999:190882971
chr4	190882973	rs78181874	A	G	411.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.830e-01;DB;DP=27;ExcessHet=6.9897;FS=12.655;MQ=56.21;MQRankSum=-5.862e+00;QD=3.92;ReadPosRankSum=2.32;SOR=0.126;VQSLOD=-4.185e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,3:27:51:0|1:190882971_T_C:51,0,1041:190882971
chr4	190884494	rs62346362	T	C	85.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=50.76;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.967;SOR=0.138;VQSLOD=-2.632e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,1:3:36:0|1:190884494_T_C:36,0,152:190884494
chr4	190884495	rs79636057	G	A	49.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=50.76;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=4.92;ReadPosRankSum=1.47;SOR=0.039;VQSLOD=-2.971e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,1:3:36:0|1:190884494_T_C:36,0,152:190884494
chr4	190904832	rs6849103	G	A	556.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=58.72;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=34.78;ReadPosRankSum=0.842;SOR=3.258;VQSLOD=-1.448e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,5:5:15:1|1:190904832_G_A:212,15,0:190904832
chr4	190904842	.	C	G	62.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.49;ReadPosRankSum=1.65;SOR=0.446;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:71:0|1:190904832_G_A:71,0,112:190904832
chr4	190905235	rs9884229	G	C	9059.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.580e-01;DB;DP=113;ExcessHet=3.0103;FS=7.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=0.884;SOR=0.341;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3526,338,0
chr4	190906060	rs184229294	C	T	2377.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.240e-01;DB;DP=93;ExcessHet=6.9897;FS=21.354;MQ=55.53;MQRankSum=-6.229e+00;QD=9.87;ReadPosRankSum=-1.405e+00;SOR=1.261;VQSLOD=-5.227e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:75,18:93:99:0|1:190906057_G_A:530,0,3088:190906057
chr4	190906080	rs78743240	A	G	2617.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=91;ExcessHet=3.9794;FS=7.272;MQ=55.68;MQRankSum=-6.645e+00;QD=11.14;ReadPosRankSum=-3.046e+00;SOR=1.093;VQSLOD=-3.453e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:78,13:91:99:149,0,2078
chr4	190906142	rs77851668	A	G	1979.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=0.4576;FS=0.000;MQ=58.34;QD=31.41;SOR=1.270;VQSLOD=2.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1996,188,0
chr4	190906202	rs62347018	C	A	1171.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.130e-01;DB;DP=35;ExcessHet=6.9897;FS=4.251;MQ=52.80;MQRankSum=-1.398e+00;NEGATIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.345;SOR=1.182;VQSLOD=-1.875e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,12:35:99:385,0,793
chr4	190942942	.	C	T	80.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.04;SOR=0.693;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190942942_C_T:90,6,0:190942942
chr4	190942946	.	C	A	80.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.50;SOR=0.693;VQSLOD=18.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190942942_C_T:90,6,0:190942942
chr4	190942953	.	G	C	80.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.64;SOR=0.693;VQSLOD=18.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190942942_C_T:90,6,0:190942942
chr4	190942954	.	A	T	80.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.84;SOR=0.693;VQSLOD=18.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190942942_C_T:90,6,0:190942942
chr4	190942970	.	G	C	80.14	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.84;SOR=0.693;VQSLOD=17.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190942970_G_C:90,6,0:190942970
chr4	190942975	.	C	T	80.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.29;SOR=0.693;VQSLOD=19.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190942970_G_C:90,6,0:190942970
chr4	190942981	rs146556265	G	A	119.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.80;SOR=1.179;VQSLOD=18.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:190942970_G_C:131,9,0:190942970
chr4	190942996	rs149329975	G	A	77.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.91;SOR=1.179;VQSLOD=18.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr4	190943048	.	C	T	148.33	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.88;SOR=0.693;VQSLOD=18.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:190943048_C_T:160,12,0:190943048
chr4	190943070	.	G	C	148.33	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.58;SOR=1.179;VQSLOD=19.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:12:1|1:190943048_C_T:160,12,0:190943048
chr4	190943071	.	C	A	148.33	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.18;SOR=1.179;VQSLOD=16.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:12:1|1:190943048_C_T:160,12,0:190943048
chr4	190943072	.	G	A	123.75	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.30;SOR=1.179;VQSLOD=17.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:190943048_C_T:135,9,0:190943048
chr4	190943077	.	G	T	123.97	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=25.27;SOR=1.179;VQSLOD=18.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:190943048_C_T:135,9,0:190943048
chr4	190943082	.	G	A	123.97	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.38;SOR=0.693;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:9:1|1:190943048_C_T:135,9,0:190943048
chr4	190943084	.	G	T	80.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.10;SOR=0.693;VQSLOD=17.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190943048_C_T:90,6,0:190943048
chr4	190943094	.	C	T	79.99	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.99;SOR=0.693;VQSLOD=18.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190943048_C_T:90,6,0:190943048
chr4	190943098	.	G	A	79.98	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=22.54;SOR=0.693;VQSLOD=16.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190943048_C_T:90,6,0:190943048
chr4	190943104	rs200065454	G	A	80.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.27;SOR=0.693;VQSLOD=18.53;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190943048_C_T:90,6,0:190943048
chr4	190943113	.	G	A	79.96	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.88;SOR=0.693;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190943048_C_T:90,6,0:190943048
chr4	190943116	.	C	T	80.18	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.57;SOR=0.693;VQSLOD=17.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:190943048_C_T:90,6,0:190943048
chr4	190943670	rs200258604	G	A	52.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=51.20;MQRankSum=0.319;NEGATIVE_TRAIN_SITE;QD=5.79;ReadPosRankSum=1.28;SOR=0.132;VQSLOD=-3.028e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,1:5:30:30,0,264
chr4	190943697	.	G	T	96.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DP=9;ExcessHet=3.0103;FS=0.000;MQ=55.08;MQRankSum=-8.760e-01;NEGATIVE_TRAIN_SITE;QD=10.70;ReadPosRankSum=-1.981e+00;SOR=0.283;VQSLOD=-3.152e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:105,0,384
chr4	190943703	.	G	A	178.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DP=11;ExcessHet=3.9794;FS=0.000;MQ=52.07;MQRankSum=1.46;NEGATIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=0.00;SOR=0.317;VQSLOD=-2.939e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:11:99:117,0,207
chr4	190943716	.	T	A	87.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.206e+00;DP=13;ExcessHet=3.0103;FS=0.000;MQ=55.21;MQRankSum=-1.840e-01;NEGATIVE_TRAIN_SITE;QD=6.71;ReadPosRankSum=-1.690e-01;SOR=0.124;VQSLOD=-2.829e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:96:96,0,510
chr4	190943717	.	C	T	316.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575e+00;DP=13;ExcessHet=6.9897;FS=0.000;MQ=53.19;MQRankSum=1.28;NEGATIVE_TRAIN_SITE;QD=7.92;ReadPosRankSum=0.283;SOR=0.093;VQSLOD=-2.779e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:99:138,0,507
chr4	190943718	rs149699229	G	A	86.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=56.15;MQRankSum=1.08;NEGATIVE_TRAIN_SITE;QD=6.19;ReadPosRankSum=-1.012e+00;SOR=0.042;VQSLOD=-2.838e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,1:13:3:3,0,642
chr4	190943721	.	G	T	217.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DP=14;ExcessHet=3.9794;FS=0.000;MQ=53.37;MQRankSum=1.08;NEGATIVE_TRAIN_SITE;QD=7.76;ReadPosRankSum=-5.660e-01;SOR=0.068;VQSLOD=-2.816e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:135,0,504
chr4	190943723	.	G	T	126.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357e+00;DP=15;ExcessHet=3.0103;FS=0.000;MQ=55.03;MQRankSum=0.425;NEGATIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=0.00;SOR=0.160;VQSLOD=-2.748e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:135,0,549
chr4	190943737	.	C	T	123.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758e+00;DP=18;ExcessHet=3.0103;FS=0.000;MQ=53.47;MQRankSum=-7.200e-01;NEGATIVE_TRAIN_SITE;QD=7.71;ReadPosRankSum=0.707;SOR=0.027;VQSLOD=-2.648e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:18:99:132,0,591
chr4	190943738	.	G	A	155.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DP=18;ExcessHet=3.9794;FS=0.000;MQ=56.76;MQRankSum=0.749;NEGATIVE_TRAIN_SITE;QD=5.17;ReadPosRankSum=0.905;SOR=0.052;VQSLOD=-2.585e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:18:99:132,0,591
chr4	190943740	rs142919510	G	T	264.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.707e+00;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=56.76;MQRankSum=-4.080e-01;NEGATIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=0.308;SOR=0.105;VQSLOD=-2.384e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,2:18:42:42,0,681
chr4	190943748	.	C	G	184.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DP=20;ExcessHet=3.9794;FS=0.000;MQ=53.90;MQRankSum=0.519;NEGATIVE_TRAIN_SITE;QD=5.58;ReadPosRankSum=-7.600e-02;SOR=0.127;VQSLOD=-2.903e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:20:99:135,0,549
chr4	190943754	.	T	C	99.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.770e-01;DP=23;ExcessHet=3.0103;FS=0.000;MQ=56.10;MQRankSum=-1.910e-01;NEGATIVE_TRAIN_SITE;QD=4.32;ReadPosRankSum=1.79;SOR=0.245;VQSLOD=-3.255e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,4:23:99:108,0,882
chr4	190943756	.	C	T	93.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DP=24;ExcessHet=3.0103;FS=0.000;MQ=53.57;MQRankSum=0.109;NEGATIVE_TRAIN_SITE;QD=3.89;ReadPosRankSum=-1.020e-01;SOR=0.404;VQSLOD=-3.318e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,4:24:99:102,0,1006
chr4	190943757	rs144652644	G	T	2035.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=24;ExcessHet=3.9794;FS=2.378;MQ=54.42;MQRankSum=3.92;NEGATIVE_TRAIN_SITE;QD=32.83;ReadPosRankSum=1.01;SOR=0.421;VQSLOD=-3.295e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,23:24:17:1089,0,17
chr4	190943760	rs138186308	G	A	528.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=26;ExcessHet=6.9897;FS=1.442;MQ=54.12;MQRankSum=0.382;NEGATIVE_TRAIN_SITE;QD=7.45;ReadPosRankSum=-1.820e-01;SOR=0.416;VQSLOD=-3.089e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,6:26:99:189,0,962
chr4	190943762	.	C	T	262.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DP=26;ExcessHet=6.9897;FS=7.177;MQ=54.21;MQRankSum=0.924;NEGATIVE_TRAIN_SITE;QD=3.65;ReadPosRankSum=1.83;SOR=2.373;VQSLOD=-2.557e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,7:26:99:237,0,876
chr4	190943763	rs146023392	G	A	937.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=26;ExcessHet=6.9897;FS=2.856;MQ=54.21;MQRankSum=1.64;NEGATIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-2.130e-01;SOR=0.339;VQSLOD=-2.535e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,6:26:99:192,0,921
chr4	190943764	.	T	A	379.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DP=26;ExcessHet=3.9794;FS=6.890;MQ=54.53;MQRankSum=0.666;NEGATIVE_TRAIN_SITE;QD=8.24;ReadPosRankSum=-1.221e+00;SOR=0.105;VQSLOD=-1.495e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,5:26:99:144,0,1171
chr4	190943767	rs139092249	T	C	2689.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=28;ExcessHet=6.9897;FS=2.540;MQ=54.34;MQRankSum=4.01;NEGATIVE_TRAIN_SITE;QD=33.62;ReadPosRankSum=1.08;SOR=1.168;VQSLOD=-3.217e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,22:28:99:1071,0,554
chr4	190943768	.	C	CCCT	94.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.438;DP=31;ExcessHet=3.9794;FS=1.686;MQ=53.80;MQRankSum=0.399;QD=1.81;ReadPosRankSum=0.189;SOR=0.293;VQSLOD=0.110;culprit=QD	GT:AD:DP:GQ:PL	0/1:24,4:31:90:90,0,1549
chr4	190943772	.	C	A	210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.637;DP=32;ExcessHet=3.0103;FS=0.000;MQ=56.10;MQRankSum=0.641;NEGATIVE_TRAIN_SITE;QD=6.57;ReadPosRankSum=0.479;SOR=0.439;VQSLOD=-2.994e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,7:32:99:219,0,1404
chr4	190943773	.	C	G	538.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490e-01;DP=32;ExcessHet=3.9794;FS=0.000;MQ=54.71;MQRankSum=0.889;NEGATIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=-1.489e+00;SOR=0.590;VQSLOD=-3.312e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,7:32:99:222,0,1362
chr4	190943774	.	C	T	30.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.042;DP=32;ExcessHet=3.0103;FS=4.792;MQ=54.77;MQRankSum=0.891;NEGATIVE_TRAIN_SITE;QD=0.95;ReadPosRankSum=-5.340e-01;SOR=2.121;VQSLOD=-2.256e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,3:32:39:39,0,1584
chr4	190943775	.	G	A	328.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DP=32;ExcessHet=3.9794;FS=0.000;MQ=56.10;MQRankSum=0.316;NEGATIVE_TRAIN_SITE;QD=5.13;ReadPosRankSum=0.365;SOR=0.569;VQSLOD=-3.115e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,7:32:99:219,0,1404
chr4	190943776	.	G	A	571.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.710e-01;DP=32;ExcessHet=3.9794;FS=0.000;MQ=54.57;MQRankSum=0.914;NEGATIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=-1.132e+00;SOR=0.584;VQSLOD=-3.222e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,7:32:99:219,0,1404
chr4	190943780	.	T	A	204.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079e+00;DP=32;ExcessHet=3.0103;FS=1.437;MQ=54.57;MQRankSum=0.696;NEGATIVE_TRAIN_SITE;QD=6.59;ReadPosRankSum=-6.120e-01;SOR=1.085;VQSLOD=-3.032e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,7:32:99:213,0,1488
chr4	190943782	rs201155312	C	T	201.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.720e-01;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=57.03;MQRankSum=0.134;NEGATIVE_TRAIN_SITE;QD=5.75;ReadPosRankSum=0.640;SOR=0.425;VQSLOD=-2.203e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,7:35:99:210,0,1530
chr4	190943783	rs199588909	G	A	1166.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=35;ExcessHet=6.9897;FS=1.789;MQ=54.76;MQRankSum=2.32;NEGATIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-4.460e-01;SOR=0.498;VQSLOD=-3.136e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,8:35:99:294,0,1524
chr4	190943785	rs200224884	G	A	313.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.41;DB;DP=37;ExcessHet=6.9897;FS=0.000;MQ=55.94;MQRankSum=0.735;NEGATIVE_TRAIN_SITE;QD=3.05;ReadPosRankSum=0.997;SOR=0.711;VQSLOD=-3.338e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,7:37:99:207,0,1482
chr4	190943786	.	G	T	1633.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660e-01;DP=37;ExcessHet=6.9897;FS=1.695;MQ=55.01;MQRankSum=2.34;NEGATIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=-5.810e-01;SOR=0.495;VQSLOD=-3.000e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:37:99:495,0,1050
chr4	190943790	.	G	T	1000.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240e-01;DP=37;ExcessHet=6.9897;FS=0.938;MQ=55.11;MQRankSum=1.10;NEGATIVE_TRAIN_SITE;QD=9.44;ReadPosRankSum=-6.350e-01;SOR=0.852;VQSLOD=-3.119e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,9:37:99:420,0,1515
chr4	190943791	rs201741597	G	T	1174.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;DB;DP=37;ExcessHet=6.9897;FS=4.541;MQ=55.06;MQRankSum=1.12;NEGATIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=-5.570e-01;SOR=1.247;VQSLOD=-1.699e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,13:37:99:597,0,1287
chr4	190943794	.	G	C	61.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117e+00;DP=41;ExcessHet=3.9794;FS=1.569;MQ=56.27;MQRankSum=0.036;NEGATIVE_TRAIN_SITE;QD=0.78;ReadPosRankSum=1.47;SOR=0.391;VQSLOD=-3.476e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,4:41:54:54,0,1959
chr4	190943796	rs147944136	T	C	1306.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-01;DB;DP=41;ExcessHet=6.9897;FS=12.004;MQ=55.77;MQRankSum=0.558;NEGATIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=0.704;SOR=1.806;VQSLOD=-2.133e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:957,0,927
chr4	190943797	.	G	A	573.62	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-01;DP=40;ExcessHet=6.9897;FS=0.913;MQ=55.77;MQRankSum=0.272;NEGATIVE_TRAIN_SITE;QD=4.99;ReadPosRankSum=0.116;SOR=0.548;VQSLOD=-3.271e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,4:40:49:49,0,1956
chr4	190943800	.	C	T	129.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DP=44;ExcessHet=3.0103;FS=5.054;MQ=55.74;MQRankSum=0.919;NEGATIVE_TRAIN_SITE;QD=2.94;ReadPosRankSum=0.00;SOR=1.767;VQSLOD=-1.804e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,6:44:99:138,0,1952
chr4	190943801	.	G	A	84.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DP=44;ExcessHet=3.0103;FS=0.000;MQ=57.73;MQRankSum=1.21;NEGATIVE_TRAIN_SITE;QD=1.91;ReadPosRankSum=0.00;SOR=0.391;VQSLOD=-1.839e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:39,5:44:93:93,0,1997
chr4	190943803	rs140977309	G	A	4210.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=44;ExcessHet=6.9897;FS=6.326;MQ=55.81;MQRankSum=4.94;NEGATIVE_TRAIN_SITE;QD=34.80;ReadPosRankSum=-3.840e-01;SOR=1.238;VQSLOD=-3.034e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,42:44:99:1800,0,239
chr4	190943805	.	G	T	1675.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.280e-01;DP=45;ExcessHet=6.9897;FS=4.631;MQ=55.89;MQRankSum=1.25;NEGATIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=-3.800e-01;SOR=0.390;VQSLOD=-1.630e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,16:45:99:585,0,1544
chr4	190943809	rs200733691	C	T	274.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=47;ExcessHet=3.9794;FS=2.693;MQ=56.68;MQRankSum=1.36;NEGATIVE_TRAIN_SITE;QD=2.92;ReadPosRankSum=1.20;SOR=0.900;VQSLOD=-3.054e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,5:47:99:168,0,2027
chr4	190943818	.	C	T	188.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.010e-01;DP=52;ExcessHet=3.0103;FS=5.565;MQ=58.11;MQRankSum=-3.850e-01;NEGATIVE_TRAIN_SITE;QD=3.62;ReadPosRankSum=0.063;SOR=1.718;VQSLOD=-1.897e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,8:52:99:197,0,2282
chr4	190943820	.	T	A	110.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DP=54;ExcessHet=3.9794;FS=0.000;MQ=57.11;MQRankSum=-1.230e-01;NEGATIVE_TRAIN_SITE;QD=1.03;ReadPosRankSum=0.808;SOR=0.634;VQSLOD=-2.511e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:48,6:54:99:104,0,2414
chr4	190943823	.	C	A	1493.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DP=56;ExcessHet=6.9897;FS=0.628;MQ=56.38;MQRankSum=1.29;NEGATIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=1.23;SOR=0.764;VQSLOD=-2.826e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,17:56:99:608,0,1793
chr4	190943824	.	G	T	121.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=56;ExcessHet=3.9794;FS=0.000;MQ=56.63;MQRankSum=1.27;NEGATIVE_TRAIN_SITE;QD=1.25;ReadPosRankSum=0.550;SOR=0.580;VQSLOD=-3.062e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:49,6:56:81:81,0,2456
chr4	190943826	rs201441363	T	G	4962.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DB;DP=57;ExcessHet=6.9897;FS=1.683;MQ=56.45;MQRankSum=3.84;NEGATIVE_TRAIN_SITE;QD=33.76;ReadPosRankSum=-6.230e-01;SOR=0.642;VQSLOD=-3.491e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,52:57:99:2168,0,424
chr4	190943829	.	G	A	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.030e+00;DP=57;ExcessHet=3.0103;FS=3.693;MQ=58.27;MQRankSum=-7.470e-01;NEGATIVE_TRAIN_SITE;QD=3.09;ReadPosRankSum=0.620;SOR=1.609;VQSLOD=-2.080e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,7:57:99:185,0,2450
chr4	190943833	.	C	T	587.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.844;DP=56;ExcessHet=6.9897;FS=0.000;MQ=56.63;MQRankSum=1.45;NEGATIVE_TRAIN_SITE;QD=3.87;ReadPosRankSum=-1.000e-01;SOR=0.697;VQSLOD=-2.945e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,11:56:99:320,0,2315
chr4	190943834	.	G	A	1386.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DP=56;ExcessHet=6.9897;FS=1.423;MQ=56.65;MQRankSum=1.38;NEGATIVE_TRAIN_SITE;QD=9.06;ReadPosRankSum=-1.580e-01;SOR=0.642;VQSLOD=-2.789e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,5:56:50:50,0,2585
chr4	190943837	.	C	T	272.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.758e+00;DP=58;ExcessHet=3.9794;FS=2.210;MQ=56.54;MQRankSum=0.931;NEGATIVE_TRAIN_SITE;QD=2.41;ReadPosRankSum=-1.491e+00;SOR=0.868;VQSLOD=-3.451e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:48,10:58:99:269,0,2383
chr4	190943838	.	G	A	171.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.644;DP=59;ExcessHet=3.9794;FS=0.000;MQ=56.56;MQRankSum=1.34;NEGATIVE_TRAIN_SITE;QD=1.71;ReadPosRankSum=-2.640e-01;SOR=0.738;VQSLOD=-3.186e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,7:59:99:131,0,2616
chr4	190943841	.	A	T	32.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DP=60;ExcessHet=3.0103;FS=0.000;MQ=58.46;MQRankSum=0.864;NEGATIVE_TRAIN_SITE;QD=0.54;ReadPosRankSum=1.49;SOR=0.997;VQSLOD=-1.803e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:55,5:60:41:41,0,2711
chr4	190943845	.	C	T	104.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DP=66;ExcessHet=3.0103;FS=0.000;MQ=58.18;MQRankSum=-1.400e-01;NEGATIVE_TRAIN_SITE;QD=1.58;ReadPosRankSum=-1.531e+00;SOR=0.902;VQSLOD=-1.994e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:59,7:66:99:113,0,2873
chr4	190943847	.	C	T	323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;DP=67;ExcessHet=3.0103;FS=1.222;MQ=57.90;MQRankSum=-1.450e-01;NEGATIVE_TRAIN_SITE;QD=4.82;ReadPosRankSum=-2.462e+00;SOR=0.977;VQSLOD=-2.587e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,12:67:99:332,0,2714
chr4	190943849	.	G	T	89.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DP=68;ExcessHet=3.0103;FS=0.000;MQ=57.95;MQRankSum=-1.370e-01;NEGATIVE_TRAIN_SITE;QD=1.31;ReadPosRankSum=-1.221e+00;SOR=0.759;VQSLOD=-1.950e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,7:68:98:98,0,3083
chr4	190943851	.	C	A	527.64	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DP=70;ExcessHet=6.9897;FS=2.187;MQ=56.37;MQRankSum=0.492;NEGATIVE_TRAIN_SITE;QD=3.14;ReadPosRankSum=-5.690e-01;SOR=0.527;VQSLOD=-3.207e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,8:70:99:159,0,2500
chr4	190943852	.	G	T	107.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.538;DP=70;ExcessHet=3.0103;FS=1.266;MQ=58.19;MQRankSum=0.234;NEGATIVE_TRAIN_SITE;QD=1.63;ReadPosRankSum=0.065;SOR=0.961;VQSLOD=-1.990e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:59,7:70:99:116,0,2831
chr4	190943856	rs138640182	G	A	6098.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-02;DB;DP=73;ExcessHet=6.9897;FS=1.737;MQ=56.43;MQRankSum=4.22;NEGATIVE_TRAIN_SITE;QD=33.15;ReadPosRankSum=-5.630e-01;SOR=0.523;VQSLOD=-3.585e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,68:73:99:2539,0,277
chr4	190943857	.	C	T	125.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.370e-01;DP=74;ExcessHet=3.0103;FS=0.000;MQ=58.15;MQRankSum=-2.280e-01;NEGATIVE_TRAIN_SITE;QD=1.69;ReadPosRankSum=-3.690e-01;SOR=0.713;VQSLOD=-1.606e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:67,7:74:99:134,0,3102
chr4	190943858	.	G	A	872.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DP=75;ExcessHet=6.9897;FS=0.651;MQ=56.47;MQRankSum=0.810;NEGATIVE_TRAIN_SITE;QD=4.80;ReadPosRankSum=0.790;SOR=0.798;VQSLOD=-3.035e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,9:75:99:132,0,2535
chr4	190943869	.	G	T	122.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590e-01;DP=74;ExcessHet=3.0103;FS=0.000;MQ=58.33;MQRankSum=-1.940e-01;NEGATIVE_TRAIN_SITE;QD=1.65;ReadPosRankSum=-7.800e-02;SOR=0.808;VQSLOD=-1.545e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,8:74:99:131,0,3206
chr4	190943870	.	G	T	180.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.930e-01;DP=73;ExcessHet=3.0103;FS=1.248;MQ=58.31;MQRankSum=0.425;NEGATIVE_TRAIN_SITE;QD=2.58;ReadPosRankSum=0.402;SOR=1.038;VQSLOD=-1.917e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:61,9:73:99:189,0,2891
chr4	190943873	rs191466057	G	A	128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170e+00;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=58.33;MQRankSum=-1.940e-01;NEGATIVE_TRAIN_SITE;QD=1.73;ReadPosRankSum=0.470;SOR=0.681;VQSLOD=-1.467e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,8:74:99:137,0,3122
chr4	190943874	.	G	T	128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.530e-01;DP=74;ExcessHet=3.0103;FS=0.000;MQ=58.33;MQRankSum=-1.940e-01;NEGATIVE_TRAIN_SITE;QD=1.73;ReadPosRankSum=0.575;SOR=0.681;VQSLOD=-1.471e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:66,8:74:99:137,0,3122
chr4	190943957	rs147159034	G	C	67.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.45;ReadPosRankSum=0.524;SOR=1.609;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,77
chr4	190947451	rs140385360	C	T	2586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.510e-01;DB;DP=113;ExcessHet=3.9794;FS=0.000;MQ=42.46;MQRankSum=-1.278e+00;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=0.716;SOR=0.731;VQSLOD=-2.784e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,69:113:99:1887,0,1265
chr4	190947558	.	G	A	4317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.606e+00;DP=246;ExcessHet=6.9897;FS=2.178;MQ=39.57;MQRankSum=-4.775e+00;QD=6.82;ReadPosRankSum=0.359;SOR=0.895;VQSLOD=-5.272e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:217,29:246:99:0|1:190947544_G_C:541,0,9226:190947544
chr4	190981481	rs369191391	CT	C	6193.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=35.07;QD=31.44;SOR=1.405;VQSLOD=4.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1469,135,0
chr4	190989721	.	C	G	73.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.115e+00;DP=18;ExcessHet=3.9794;FS=0.000;MQ=42.70;MQRankSum=-5.330e-01;QD=2.29;ReadPosRankSum=0.274;SOR=0.460;VQSLOD=-4.778e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,2:18:36:0|1:190989721_C_G:36,0,1126:190989721
chr4	190989724	.	C	A	73.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.120e+00;DP=18;ExcessHet=3.9794;FS=0.000;MQ=42.70;MQRankSum=-5.330e-01;QD=2.29;ReadPosRankSum=-9.100e-02;SOR=0.460;VQSLOD=-4.824e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,2:18:36:0|1:190989721_C_G:36,0,1126:190989721
chr4	190989730	.	C	A	70.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001e+00;DP=19;ExcessHet=3.9794;FS=0.000;MQ=42.65;MQRankSum=-5.330e-01;QD=2.13;ReadPosRankSum=-9.100e-02;SOR=0.420;VQSLOD=-4.809e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,2:19:33:0|1:190989721_C_G:33,0,1168:190989721
chr4	190989732	.	G	A	70.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001e+00;DP=19;ExcessHet=3.9794;FS=0.000;MQ=42.65;MQRankSum=-5.330e-01;QD=2.13;ReadPosRankSum=-2.740e-01;SOR=0.420;VQSLOD=-4.839e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,2:19:33:0|1:190989721_C_G:33,0,1168:190989721
chr4	190989733	.	C	T	70.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001e+00;DP=19;ExcessHet=3.9794;FS=0.000;MQ=42.65;MQRankSum=-5.330e-01;QD=2.13;ReadPosRankSum=-2.740e-01;SOR=0.420;VQSLOD=-4.841e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,2:19:33:0|1:190989721_C_G:33,0,1168:190989721
chr4	190989739	.	C	T	70.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.150e-01;DP=19;ExcessHet=3.9794;FS=0.000;MQ=42.73;MQRankSum=-5.640e-01;QD=2.20;ReadPosRankSum=-8.930e-01;SOR=0.368;VQSLOD=-4.895e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,2:19:30:0|1:190989721_C_G:30,0,1210:190989721
chr4	190989740	.	G	C	70.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590e-01;DP=20;ExcessHet=3.9794;FS=0.000;MQ=42.68;MQRankSum=-5.640e-01;QD=2.13;ReadPosRankSum=-1.092e+00;SOR=0.336;VQSLOD=-4.931e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,2:20:30:0|1:190989721_C_G:30,0,1210:190989721
chr4	190989743	.	G	C	70.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DP=20;ExcessHet=3.9794;FS=0.000;MQ=42.68;MQRankSum=-5.640e-01;QD=2.13;ReadPosRankSum=-1.450e+00;SOR=0.336;VQSLOD=-5.048e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,2:20:30:0|1:190989721_C_G:30,0,1210:190989721
chr5	162951	rs138273161	G	A	1052.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;DB;DP=67;ExcessHet=3.0103;FS=3.581;MQ=60.00;MQRankSum=0.00;QD=15.71;ReadPosRankSum=0.811;SOR=1.228;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,41:67:99:1061,0,612
chr5	163205	rs3810870	G	C	7941.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=147;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=2.000e-03;SOR=0.724;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,78:147:99:2146,0,1812
chr5	163260	rs29674	A	C	12855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.94;SOR=0.710;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4462,399,0
chr5	163619	rs114939243	G	A	952.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DB;DP=73;ExcessHet=3.0103;FS=1.968;MQ=60.00;MQRankSum=0.00;QD=13.04;ReadPosRankSum=-1.370e+00;SOR=0.485;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,35:73:99:961,0,1047
chr5	163769	rs29675	G	A	3295.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.920e-01;DB;DP=45;ExcessHet=3.0103;FS=3.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.41;ReadPosRankSum=-1.694e+00;SOR=0.448;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1385,135,0
chr5	163896	rs13157043	C	A	316.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.68;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:73:112,0,73
chr5	169301	rs13167406	A	G	470.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.15;ReadPosRankSum=-4.840e-01;SOR=0.551;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr5	169361	rs13159868	C	T	1147.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=14;ExcessHet=3.9794;FS=7.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.70;ReadPosRankSum=0.805;SOR=2.938;VQSLOD=17.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:592,42,0
chr5	169763	rs1108868	A	G	2759.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.647e+00;DB;DP=41;ExcessHet=3.9794;FS=4.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=-7.640e-01;SOR=0.242;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,40:41:81:1513,81,0
chr5	169902	rs1108867	T	C	440.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.58;ReadPosRankSum=-3.190e-01;SOR=2.147;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr5	171569	rs4956981	T	C	7081.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=88;ExcessHet=3.0103;FS=1.296;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=1.30;SOR=0.594;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2786,264,0
chr5	171643	rs13171103	C	G	4675.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.950e-01;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=0.250;SOR=0.758;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2010,192,0
chr5	171749	rs13156306	G	A	936.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.476;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=-9.440e-01;SOR=0.890;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:599,45,0
chr5	172971	rs6868964	G	A	4547.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.32;DB;DP=67;ExcessHet=3.9794;FS=4.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=0.946;SOR=0.456;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2341,201,0
chr5	173200	rs6885136	C	T	4425.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.310e-01;DB;DP=93;ExcessHet=1.5490;FS=6.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=1.50;SOR=0.351;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2978,279,0
chr5	173258	rs6893369	A	G	4603.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.65;ReadPosRankSum=-7.470e-01;SOR=1.107;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1541,129,0
chr5	173712	rs4956985	G	C	263.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.77;SOR=4.174;VQSLOD=19.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr5	173768	rs4956986	G	C	955.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.224e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.97;ReadPosRankSum=-3.880e-01;SOR=2.517;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:473,36,0
chr5	174106	rs4956987	G	A	7197.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=117;ExcessHet=3.9794;FS=2.915;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.323;SOR=0.854;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3689,351,0
chr5	174240	rs6875054	G	A	2757.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.168e+00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.34;ReadPosRankSum=-1.169e+00;SOR=0.807;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:174240_G_A:1386,93,0:174240
chr5	174241	rs6890914	C	A	2757.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.880e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=-1.194e+00;SOR=0.765;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:93:1|1:174240_G_A:1386,93,0:174240
chr5	174267	rs6862729	A	G	733.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.658;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=-1.199e+00;SOR=0.468;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:388,30,0
chr5	181463	rs7717734	T	C	1267.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.248e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.92;ReadPosRankSum=0.275;SOR=1.287;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:408,33,0
chr5	181660	rs7717970	T	G	6828.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.25;DB;DP=98;ExcessHet=3.0103;FS=0.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=0.495;SOR=0.766;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,97:98:99:2942,283,0
chr5	181730	rs12519352	C	G	3967.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=76;ExcessHet=3.9794;FS=3.232;MQ=59.84;MQRankSum=1.31;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-8.230e-01;SOR=0.510;VQSLOD=2.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2327,228,0
chr5	181762	rs11133847	A	G	4372.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.288e+00;DB;DP=51;ExcessHet=3.0103;FS=2.998;MQ=59.78;MQRankSum=0.942;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-9.100e-01;SOR=0.430;VQSLOD=1.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1686,153,0
chr5	182077	rs4956924	T	A	12393.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.894;DB;DP=156;ExcessHet=3.0103;FS=0.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=1.11;SOR=0.677;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,154:156:99:4596,416,0
chr5	191992	rs34710524	G	A	906.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.309;DB;DP=63;ExcessHet=3.0103;FS=3.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.53;SOR=0.381;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,35:63:99:915,0,694
chr5	195507	rs13167067	C	T	4447.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.547e+00;DB;DP=68;ExcessHet=3.9794;FS=0.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=-6.830e-01;SOR=0.587;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2498,204,0
chr5	218598	rs2303740	G	A	1032.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.061e+00;DB;DP=23;ExcessHet=3.9794;FS=2.517;MQ=60.00;MQRankSum=0.00;QD=17.81;ReadPosRankSum=0.770;SOR=0.404;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:739,69,0
chr5	223646	rs34635677	A	T	587.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106e+00;DB;DP=47;ExcessHet=3.0103;FS=2.508;MQ=59.77;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.331;SOR=0.513;VQSLOD=5.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,25:47:99:596,0,571
chr5	225697	rs193283468	G	C	1413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.850e-01;DB;DP=161;ExcessHet=3.0103;FS=1.979;MQ=60.00;MQRankSum=0.00;QD=8.78;ReadPosRankSum=-4.860e-01;SOR=0.612;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,65:161:99:1422,0,2352
chr5	225768	rs12520059	G	C	5322.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DB;DP=92;ExcessHet=3.9794;FS=3.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=0.275;SOR=0.926;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3093,275,0
chr5	230980	rs2288461	A	G	18370.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.21;DB;DP=227;ExcessHet=3.0103;FS=5.020;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.67;ReadPosRankSum=-7.880e-01;SOR=1.061;VQSLOD=7.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,227:227:99:7146,681,0
chr5	231111	rs1126417	T	C	23656.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.09;DB;DP=253;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=28.23;ReadPosRankSum=0.920;SOR=0.793;VQSLOD=5.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,253:253:99:8266,759,0
chr5	233325	rs7724921	G	A	420.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=57.37;MQRankSum=1.28;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.90;ReadPosRankSum=-1.282e+00;SOR=3.611;VQSLOD=-2.081e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	233362	rs7714306	T	G	593.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.838e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.65;MQRankSum=1.15;NEGATIVE_TRAIN_SITE;QD=28.26;ReadPosRankSum=1.35;SOR=3.160;VQSLOD=-1.572e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr5	233665	rs142849100	C	T	2820.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.090e-01;DB;DP=277;ExcessHet=3.0103;FS=0.918;MQ=59.92;MQRankSum=0.00;QD=10.18;ReadPosRankSum=-5.120e-01;SOR=0.689;VQSLOD=4.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:153,124:277:99:2829,0,3697
chr5	254636	rs35549341	C	T	110.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=47.91;MQRankSum=-5.680e-01;QD=10.02;ReadPosRankSum=1.60;SOR=1.112;VQSLOD=-3.374e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:119,0,221
chr5	272043	.	TCCTCCGTCCCCTGTCGGGTCCCCCGCGGCCC	T	950.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.66;ReadPosRankSum=1.75;SOR=0.892;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,25:46:99:959,0,3270
chr5	273089	rs181380731	C	G	603.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.770e-01;DB;DP=51;ExcessHet=3.0103;FS=1.255;MQ=55.00;MQRankSum=-1.189e+00;NEGATIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=-1.890e-01;SOR=1.044;VQSLOD=-2.791e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,23:51:99:612,0,761
chr5	289642	rs6555127	G	A	2671.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DB;DP=70;ExcessHet=6.9897;FS=3.072;MQ=53.77;MQRankSum=-9.780e-01;NEGATIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.297;SOR=0.505;VQSLOD=-2.474e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,30:70:99:776,0,876
chr5	311478	rs2244029	T	C	12015.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.660;DB;DP=337;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.312;SOR=0.679;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:239,98:337:99:1983,0,6253
chr5	313762	rs2672767	G	A	550.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=14;ExcessHet=3.9794;FS=6.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.30;ReadPosRankSum=1.91;SOR=0.069;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:112,0,389
chr5	314011	rs4957018	G	A	7551.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=211;ExcessHet=3.9794;FS=1.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=1.48;SOR=0.610;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,68:211:99:1679,0,3848
chr5	314145	rs76623415	C	CTGTGTCCTGA	2356.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.37;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.62;ReadPosRankSum=-7.220e-01;SOR=0.453;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,17:38:99:691,0,817
chr5	314346	rs4957020	C	T	479.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.374;DB;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=-2.100e-01;SOR=0.569;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:164,0,287
chr5	343885	rs2292631	T	C	3075.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.79;DB;DP=58;ExcessHet=3.9794;FS=6.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-5.000e-02;SOR=2.252;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,39:58:99:1480,0,516
chr5	344218	rs6887387	C	T	4508.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=107;ExcessHet=3.9794;FS=0.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=0.369;SOR=0.777;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:80,27:107:99:589,0,2243
chr5	344330	rs71585239	A	G	592.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.44;ReadPosRankSum=-1.540e-01;SOR=0.418;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:262,0,603
chr5	354051	rs2013782	T	C	6376.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.519e+00;DB;DP=178;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=-9.870e-01;SOR=0.674;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,50:178:99:999,0,3564
chr5	367776	rs239344	G	C	1409.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.49;SOR=5.728;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:493,36,0
chr5	376618	.	G	GTGAGAACCGTGGGGTGAACGCGGGGAAACACAGGAAAGATGTGAATGAA	6163.73	PASS	AC=2;AF=1.00;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.42;SOR=2.613;VQSLOD=3.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:99:2102,128,0
chr5	376994	rs11133994	G	A	1917.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.048;DB;DP=49;ExcessHet=6.9897;FS=2.091;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-1.650e-01;SOR=0.896;VQSLOD=6.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,18:49:99:328,0,848
chr5	413428	rs3215229	AT	A	2669.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-01;DB;DP=99;ExcessHet=3.9794;FS=0.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=1.11;SOR=0.628;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:67,28:99:99:496,0,1656
chr5	413594	rs2261659	G	C	6144.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.262e+00;DB;DP=167;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-1.087e+00;SOR=0.685;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,59:167:99:1205,0,2847
chr5	413621	rs2261623	G	A	5040.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=138;ExcessHet=3.9794;FS=0.865;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=-8.610e-01;SOR=0.753;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,42:138:99:930,0,2397
chr5	422955	rs2292596	C	G	3044.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.154;DB;DP=95;ExcessHet=3.9794;FS=0.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.236;SOR=0.624;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,57:95:99:1627,0,937
chr5	427554	rs56239117	A	AG	181.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.20;SOR=3.912;VQSLOD=6.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:65,6,0
chr5	433952	rs2672724	C	T	2016.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=70;ExcessHet=3.9794;FS=0.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.13;ReadPosRankSum=0.902;SOR=0.593;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,44:70:99:1260,0,697
chr5	434981	rs2672725	G	C	3493.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=109;ExcessHet=3.9794;FS=0.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.645;SOR=0.638;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,79:109:99:2428,0,654
chr5	435055	rs2672779	G	T	1085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.038;DB;DP=35;ExcessHet=3.9794;FS=2.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-8.400e-01;SOR=0.388;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,25:35:99:737,0,237
chr5	443148	rs2721029	T	A	999.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.196e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.26;ReadPosRankSum=-5.000e-02;SOR=3.477;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,15:19:99:537,0,110
chr5	446577	rs12654521	G	A	765.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-02;DB;DP=47;ExcessHet=3.9794;FS=2.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=0.799;SOR=1.003;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,18:47:99:463,0,805
chr5	446730	rs10060385	G	T	304.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=-5.240e-01;SOR=0.818;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:65:65,0,108
chr5	453567	rs2672722	G	A	6926.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.470e-01;DB;DP=190;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.85;ReadPosRankSum=1.13;SOR=0.714;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,71:190:99:1675,0,3326
chr5	456915	rs2721010	A	G	13857.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.540e-01;DB;DP=445;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=-2.260e-01;SOR=0.692;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:290,155:445:99:3551,0,7506
chr5	457249	rs2672755	G	T	967.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.844e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=-2.820e-01;SOR=0.732;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:188,0,452
chr5	457955	rs2251843	A	G	3800.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595e+00;DB;DP=133;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=-4.950e-01;SOR=0.679;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,44:133:99:898,0,2374
chr5	459295	rs35612609	GT	G	143.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:37:64,0,37
chr5	459341	rs34067680	AT	A	522.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.651;SOR=1.863;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,4:12:79:79,0,193
chr5	459734	rs77253901	G	A	659.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=0.308;SOR=0.976;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:202,0,490
chr5	459772	rs2561663	A	G	549.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.84;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.91;ReadPosRankSum=1.74;SOR=1.179;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:95:95,0,292
chr5	459793	rs2561664	T	C	372.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.31;ReadPosRankSum=0.703;SOR=1.609;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:89:89,0,179
chr5	462465	rs890972	C	A	2588.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.210e+00;DB;DP=120;ExcessHet=1.5490;FS=1.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=1.11;SOR=0.810;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,33:120:99:547,0,2505
chr5	462556	rs2081942	G	A	452.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=31;ExcessHet=3.9794;FS=7.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=0.372;SOR=2.704;VQSLOD=16.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,4:31:67:67,0,801
chr5	464177	rs2434695	C	G	270.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=23.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:56:56,0,145
chr5	465510	rs1035908	T	C	826.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.548e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.51;ReadPosRankSum=-5.410e-01;SOR=1.308;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:189,0,208
chr5	465633	rs1035909	C	T	268.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=14;ExcessHet=3.9794;FS=8.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-1.137e+00;SOR=0.039;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:132,0,297
chr5	466075	rs10474780	G	C	2044.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.865e+00;DB;DP=50;ExcessHet=1.5490;FS=3.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.47;ReadPosRankSum=-5.740e-01;SOR=1.725;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,20:50:99:576,0,962
chr5	466113	rs10475262	A	G	1412.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995e+00;DB;DP=29;ExcessHet=1.5490;FS=5.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=1.03;SOR=3.056;VQSLOD=18.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,13:29:99:0|1:466113_A_G:483,0,1081:466113
chr5	466125	rs9313086	T	G	1159.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=25;ExcessHet=1.5490;FS=4.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=1.42;SOR=2.765;VQSLOD=19.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,11:25:99:0|1:466113_A_G:417,0,1048:466113
chr5	466811	rs2434697	T	C	9349.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.63;DB;DP=300;ExcessHet=1.5490;FS=2.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.59;ReadPosRankSum=-2.870e-01;SOR=0.877;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:202,98:300:99:2370,0,5450
chr5	476531	rs373937612	C	T	1190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.81;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.52;ReadPosRankSum=-8.350e-01;SOR=0.722;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1199,0,1055
chr5	483002	rs2721030	A	G	4017.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.78;SOR=6.869;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1152,81,0
chr5	485453	rs41282629	C	T	2097.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DB;DP=48;ExcessHet=1.5490;FS=1.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=0.300;SOR=1.255;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:679,0,755
chr5	488298	rs2303736	A	G	13196.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=7.42;DB;DP=103;ExcessHet=3.0103;FS=8.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=0.288;SOR=3.262;VQSLOD=15.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,55:103:99:2065,0,1671
chr5	488310	rs2303737	C	T	11959.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.43;DB;DP=135;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.81;ReadPosRankSum=-4.020e-01;SOR=0.539;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,71:135:99:2523,0,2144
chr5	491826	rs11746373	G	C	7338.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.54;DB;DP=90;ExcessHet=3.0103;FS=1.385;MQ=59.98;MQRankSum=-1.113e+00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=0.610;SOR=0.844;VQSLOD=1.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,90:90:99:3012,270,0
chr5	535726	rs78937525	C	T	61.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=-1.036e+00;SOR=0.368;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,71
chr5	634130	rs1709550	G	C	1751.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.533;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.863;SOR=0.947;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:393,0,388
chr5	635709	rs1697985	C	T	1035.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.27;ReadPosRankSum=1.25;SOR=1.071;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:116,0,24
chr5	637443	rs1709554	A	G	914.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.440e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.67;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:230,18,0
chr5	637514	rs1709553	C	T	1639.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-01;DB;DP=32;ExcessHet=3.9794;FS=10.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=0.156;SOR=2.397;VQSLOD=16.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:425,0,593
chr5	639089	rs1709552	G	A	2977.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750e+00;DB;DP=58;ExcessHet=1.5490;FS=2.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=1.33;SOR=0.437;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,38:58:99:1104,0,612
chr5	639455	rs1709551	C	G	1077.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=16;ExcessHet=3.9794;FS=1.396;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=0.696;SOR=0.460;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:304,0,178
chr5	640705	rs868649	A	G	2680.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=30;ExcessHet=3.9794;FS=5.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.08;ReadPosRankSum=-2.240e-01;SOR=0.203;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,18:30:99:546,0,389
chr5	644791	rs1612373	G	A	592.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.88;ReadPosRankSum=1.65;SOR=3.383;VQSLOD=18.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:36:108,0,36
chr5	647816	rs1697976	T	A	403.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.280e-01;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=-1.700e-01;SOR=0.776;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:64:64,0,372
chr5	653343	rs2458815	T	C	9436.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DB;DP=153;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.46;ReadPosRankSum=0.530;SOR=0.670;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,80:153:99:2040,0,1708
chr5	653466	rs3840990	G	GC	1258.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=0.031;SOR=2.179;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,8:14:99:228,0,164
chr5	665280	rs1697963	T	C	18545.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=194;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.16;SOR=1.095;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,194:194:99:5756,581,0
chr5	666244	rs149807312	G	GGGGCACAGGCGACTTA	4658.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.122e+00;DB;DP=114;ExcessHet=3.9794;FS=5.196;MQ=60.00;MQRankSum=0.00;QD=18.56;ReadPosRankSum=-2.348e+00;SOR=1.029;VQSLOD=4.36;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:59,55:114:99:2211,0,2310
chr5	666323	rs1697964	A	G	4821.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.692e+00;DB;DP=49;ExcessHet=3.0103;FS=0.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.79;ReadPosRankSum=-2.781e+00;SOR=0.848;VQSLOD=21.90;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1816,147,0
chr5	716759	rs62332079	G	A	2988.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.48;DB;DP=98;ExcessHet=6.9897;FS=11.103;MQ=42.59;MQRankSum=1.20;QD=10.60;ReadPosRankSum=-2.470e-01;SOR=0.251;VQSLOD=-4.371e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,22:98:99:540,0,2062
chr5	730815	rs432521	A	T	520.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=3;ExcessHet=3.9794;FS=5.229;MQ=49.82;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=-3.102e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:76,0,32
chr5	734033	rs406638	G	A	4007.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=56;ExcessHet=6.9897;FS=3.703;MQ=59.22;MQRankSum=-5.740e-01;NEGATIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=-1.003e+00;SOR=0.247;VQSLOD=-1.334e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,24:56:99:776,0,1070
chr5	748114	rs679865	T	A	1725.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.300e-02;DB;DP=21;ExcessHet=3.9794;FS=13.171;MQ=51.86;MQRankSum=-3.871e+00;NEGATIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=-7.470e-01;SOR=2.643;VQSLOD=-3.893e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:215,0,327
chr5	748141	rs75756990	C	T	2798.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=29;ExcessHet=3.9794;FS=15.092;MQ=54.63;MQRankSum=-3.299e+00;NEGATIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=-1.332e+00;SOR=2.394;VQSLOD=-3.249e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:417,0,393
chr5	748482	rs3817065	G	C,T	24797.97	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=40.62;QD=28.19;SOR=0.733;VQSLOD=-5.267e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,80,20:100:99:4198,635,335,2913,0,2731
chr5	748771	rs3817059	C	T	2471.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=92;ExcessHet=3.9794;FS=11.686;MQ=58.30;MQRankSum=-6.249e+00;QD=6.52;ReadPosRankSum=3.24;SOR=0.307;VQSLOD=-4.595e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:62,30:92:99:0|1:748771_C_T:1148,0,3532:748771
chr5	748776	rs3817058	A	G	2466.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.530e+00;DB;DP=92;ExcessHet=3.9794;FS=9.594;MQ=58.45;MQRankSum=-5.952e+00;QD=6.91;ReadPosRankSum=3.78;SOR=0.333;VQSLOD=-4.620e+00;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,32:92:99:0|1:748771_C_T:1154,0,3478:748771
chr5	748926	rs11134218	G	A	2126.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=5.709;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr5	751235	rs192435256	G	A	5267.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=153;ExcessHet=1.5490;FS=1.758;MQ=46.01;MQRankSum=4.11;QD=23.84;ReadPosRankSum=0.879;SOR=0.566;VQSLOD=-5.259e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:86,67:153:99:0|1:751229_G_T:2401,0,3329:751229
chr5	751256	rs183666382	C	A	3768.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.004e+00;DB;DP=219;ExcessHet=1.5490;FS=0.888;MQ=45.07;MQRankSum=3.21;QD=12.52;ReadPosRankSum=2.54;SOR=0.638;VQSLOD=-5.139e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:135,84:219:99:1584,0,2999
chr5	751412	.	T	A	1094.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.080e-01;DP=45;ExcessHet=1.5490;FS=5.136;MQ=36.20;MQRankSum=-1.175e+00;QD=20.28;ReadPosRankSum=0.072;SOR=0.125;VQSLOD=-4.984e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,30:45:99:809,0,418
chr5	756307	rs367198	T	C	6001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=39.97;POSITIVE_TRAIN_SITE;QD=30.94;SOR=2.303;VQSLOD=-2.701e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1946,189,0
chr5	756384	rs60292232	G	GT	3038.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.044;DB;DP=41;ExcessHet=6.9897;FS=5.027;MQ=49.32;MQRankSum=-3.060e-01;POSITIVE_TRAIN_SITE;QD=23.74;ReadPosRankSum=0.314;SOR=2.049;VQSLOD=0.502;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,23:41:99:737,0,551
chr5	766586	rs4957101	C	T	1196.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=1.04;SOR=4.047;VQSLOD=13.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,9:10:10:0|1:766586_C_T:344,0,10:766586
chr5	766910	rs1809933	C	T	31031.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=397;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=-6.100e-01;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-8.560e-01;SOR=0.681;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:109,288:397:99:7689,0,1903
chr5	766939	rs4957103	G	A	1835.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.032;DB;DP=367;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.614;QD=5.00;ReadPosRankSum=0.597;SOR=0.714;VQSLOD=0.060;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:268,99:367:99:1844,0,7250
chr5	767033	rs1809932	A	C	33848.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=344;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=-4.180e-01;SOR=0.595;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,258:344:99:7593,0,1614
chr5	767084	rs111384701	C	T	9847.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=375;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.465;SOR=0.696;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:277,98:375:99:1847,0,7520
chr5	767202	rs11134235	T	C	927.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.129;DB;DP=168;ExcessHet=3.0103;FS=3.725;MQ=60.00;MQRankSum=0.00;QD=5.52;ReadPosRankSum=0.980;SOR=0.413;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:125,43:168:99:936,0,3858
chr5	767288	rs7731690	A	G	2090.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.619e+00;DB;DP=74;ExcessHet=6.9897;FS=3.147;MQ=60.00;MQRankSum=0.00;QD=8.71;ReadPosRankSum=0.892;SOR=0.934;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,35:74:99:1072,0,1342
chr5	796297	rs365674	C	T	8837.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.258;DB;DP=551;ExcessHet=3.9794;FS=1.261;MQ=57.03;MQRankSum=-7.351e+00;QD=9.21;ReadPosRankSum=-5.100e-01;SOR=0.813;VQSLOD=-4.660e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:395,156:551:99:0|1:796221_G_A:4982,0,16586:796221
chr5	801362	rs3867415	A	G	2009.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.787;DB;DP=34;ExcessHet=3.9794;FS=4.411;MQ=56.92;MQRankSum=1.43;NEGATIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=-3.230e-01;SOR=0.237;VQSLOD=-1.568e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1270,102,0
chr5	825280	rs1809008	C	T	9816.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DB;DP=551;ExcessHet=6.9897;FS=1.252;MQ=59.17;MQRankSum=-9.785e+00;POSITIVE_TRAIN_SITE;QD=6.72;ReadPosRankSum=-2.650e-01;SOR=0.810;VQSLOD=-5.113e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:497,54:551:99:0|1:825280_C_T:768,0,25979:825280
chr5	834075	rs1260864	G	A	1614.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=33;ExcessHet=3.9794;FS=8.771;MQ=46.30;MQRankSum=0.314;QD=16.65;ReadPosRankSum=0.687;SOR=1.762;VQSLOD=-3.641e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:97:1006,97,0
chr5	840070	rs3822817	C	T	727.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=46.46;MQRankSum=-9.670e-01;QD=29.51;ReadPosRankSum=0.00;SOR=3.160;VQSLOD=-3.256e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:63,0,33
chr5	840342	rs3822811	A	G	9843.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.608e+00;DB;DP=409;ExcessHet=3.9794;FS=1.150;MQ=59.94;MQRankSum=-6.160e-01;QD=13.90;ReadPosRankSum=-4.610e-01;SOR=0.789;VQSLOD=0.771;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:114,295:409:99:7945,0,2363
chr5	840573	rs189121845	C	T	3873.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.116;DB;DP=492;ExcessHet=3.0103;FS=0.543;MQ=52.25;MQRankSum=-5.500e-01;NEGATIVE_TRAIN_SITE;QD=7.87;ReadPosRankSum=-1.898e+00;SOR=0.662;VQSLOD=-3.635e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:323,169:492:99:3882,0,8312
chr5	840888	rs57285777	T	C	4570.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.30;DB;DP=140;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.04;ReadPosRankSum=1.87;SOR=0.664;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,102:140:99:3597,0,920
chr5	840928	rs3817055	C	T	2506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.92;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.54;ReadPosRankSum=0.892;SOR=0.632;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,57:73:99:1912,0,388
chr5	843696	rs143771442	G	T	9586.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.049e+00;DB;DP=203;ExcessHet=3.9794;FS=0.000;MQ=51.34;MQRankSum=-2.866e+00;NEGATIVE_TRAIN_SITE;QD=16.56;ReadPosRankSum=-1.113e+00;SOR=0.677;VQSLOD=-3.160e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:144,59:203:99:0|1:843696_G_T:1969,0,5947:843696
chr5	843702	rs3863147	G	A	12437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=217;ExcessHet=6.9897;FS=0.000;MQ=50.87;MQRankSum=-3.216e+00;NEGATIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-7.550e-01;SOR=0.693;VQSLOD=-3.270e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:154,63:217:99:0|1:843696_G_T:2044,0,6158:843696
chr5	843723	rs3863148	C	A	9174.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.594e+00;DB;DP=256;ExcessHet=6.9897;FS=0.000;MQ=50.30;MQRankSum=-3.532e+00;NEGATIVE_TRAIN_SITE;QD=9.43;ReadPosRankSum=0.289;SOR=0.715;VQSLOD=-3.620e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:187,69:256:99:1233,0,4370
chr5	848848	rs581038	G	T	99.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.140e-01;DB;DP=48;ExcessHet=3.0103;FS=4.923;MQ=54.69;MQRankSum=-4.918e+00;NEGATIVE_TRAIN_SITE;QD=2.07;ReadPosRankSum=-2.783e+00;SOR=2.187;VQSLOD=-4.173e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,8:48:99:108,0,1269
chr5	865896	rs12522071	G	A	89.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=0.328;SOR=0.495;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,151
chr5	917110	rs58157086	G	A	791.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.787;DB;DP=74;ExcessHet=3.0103;FS=0.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.69;ReadPosRankSum=0.979;SOR=0.582;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,33:74:99:800,0,1062
chr5	981019	rs10065177	T	C	3626.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.360e-01;DB;DP=26;ExcessHet=3.0103;FS=3.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=1.36;SOR=1.161;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:906,78,0
chr5	1009425	rs10060716	A	G	2509.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.631e+00;DB;DP=29;ExcessHet=3.0103;FS=1.166;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=0.269;SOR=0.936;VQSLOD=6.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,29:29:87:874,87,0
chr5	1032032	rs4975577	T	C	557.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.960e-01;DB;DP=16;ExcessHet=3.9794;FS=1.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.762;SOR=0.368;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:197,0,297
chr5	1034246	rs4975576	A	T	948.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.64;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=1.41;SOR=1.445;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:378,0,233
chr5	1035482	rs12657514	A	G	15828.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.76;DB;DP=212;ExcessHet=3.0103;FS=0.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=-8.000e-02;SOR=0.710;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,212:212:99:6723,635,0
chr5	1036521	rs60180971	G	A	2708.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.850e-01;DB;DP=73;ExcessHet=6.9897;FS=5.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=0.186;SOR=0.430;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,38:73:99:931,0,922
chr5	1036900	rs34309815	C	T	2454.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=109;ExcessHet=3.9794;FS=1.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.72;ReadPosRankSum=1.04;SOR=0.789;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,54:109:99:1202,0,1214
chr5	1036962	rs34413936	C	A	1816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=58;ExcessHet=3.9794;FS=0.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=0.982;SOR=0.596;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,31:58:99:898,0,707
chr5	1037061	.	GGGCAGTGTGGACGGCGGGCAGTGTGGACAGCGAGCAGTGTGGATGGCAGGCAGGCAGTGTGGATGGCGGGCAATGTGGATGGCAGGCAGGCAGTGTGGACGGCGGGCAGTGTGGATGGCAGCCA	G	157.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.48;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:55:55,0,162
chr5	1037065	.	AGTGTGGACGGCGGGCAGTGTGGACAGCGAGCAGTGTGGATGGCAGGCAGGCAGTGTGGATGGCGGGCAATGTGGATGGCAGGCAGGCAGTGTGGACGGCGGGCAGTGTGGATGGCAGCCAGGCAGT	AGTGGACGGCGGGCAGTGTGGACAGCGAGCAGTGTGGATGGCAGGCAGGCAGTGTGGATGGCGGGCAATGTGGATGGCAGGCAGGCAGTGTGGACGGCGGGCAGTGTGGATGGCAGCCAGGCAGT,*	307.40	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.030e-01;DP=4;ExcessHet=3.9794;FS=2.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=0.816;SOR=1.609;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,2:4:67:147,67,74,84,0,160
chr5	1038526	rs3889678	A	G	7983.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.580e-01;DB;DP=89;ExcessHet=3.0103;FS=14.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=0.928;SOR=1.027;VQSLOD=13.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2699,267,0
chr5	1052360	rs3810854	C	T	846.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.724e+00;DB;DP=55;ExcessHet=3.9794;FS=3.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.40;ReadPosRankSum=0.169;SOR=0.392;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:596,0,776
chr5	1052735	rs4046186	GGAGCA	G	914.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.77;DB;DP=21;ExcessHet=3.9794;FS=1.236;MQ=60.00;MQRankSum=0.00;QD=17.58;ReadPosRankSum=0.960;SOR=0.452;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,12:21:99:477,0,594
chr5	1053216	rs2241601	G	C	406.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.725;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=0.908;SOR=0.368;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:226,0,130
chr5	1053341	rs2241602	A	G	2762.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.24;DB;DP=96;ExcessHet=6.9897;FS=1.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.19;ReadPosRankSum=0.312;SOR=0.836;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,36:96:99:1008,0,1996
chr5	1053396	rs2241603	C	G	4721.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.436e+00;DB;DP=175;ExcessHet=6.9897;FS=0.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=-7.270e-01;SOR=0.747;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,63:175:99:1391,0,3013
chr5	1057405	rs2241605	G	A	689.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-3.690e-01;SOR=0.648;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:201,0,228
chr5	1057615	rs2241606	A	G	8888.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=173;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-5.610e-01;SOR=0.706;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,78:173:99:1784,0,2401
chr5	1057782	rs12108965	T	C	3721.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.152e+00;DB;DP=42;ExcessHet=3.0103;FS=3.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.98;ReadPosRankSum=1.21;SOR=0.362;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1371,126,0
chr5	1057890	rs2241607	G	A	341.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=1.98;SOR=1.609;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:154,0,65
chr5	1060366	rs4975699	C	G	1933.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.972e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=0.861;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=1.91;SOR=2.551;VQSLOD=0.163;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:78:968,78,0
chr5	1060379	rs35661060	G	A	1365.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.172e+00;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=-2.480e-01;SOR=1.495;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:467,0,604
chr5	1060400	rs4975568	G	A	3717.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.85;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.51;ReadPosRankSum=0.745;SOR=1.098;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1377,111,0
chr5	1060634	rs4246750	C	T	10489.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-8.900e-02;SOR=0.741;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,144:145:99:4345,397,0
chr5	1060654	rs4246749	G	A	8417.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.610e-01;DB;DP=121;ExcessHet=3.0103;FS=1.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=0.217;SOR=0.815;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3639,360,0
chr5	1060685	rs2241608	G	A	2458.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.40;DB;DP=81;ExcessHet=3.9794;FS=7.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=3.45;SOR=1.402;VQSLOD=20.54;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1216,0,1000
chr5	1060795	rs11133609	G	A	1366.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.754;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=0.753;SOR=0.760;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:1060795_G_A:609,42,0:1060795
chr5	1060804	rs4246748	C	T	1210.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.34;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.60;ReadPosRankSum=0.809;SOR=0.818;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:1060795_G_A:573,39,0:1060795
chr5	1060831	rs4975567	G	A	707.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.369e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.77;ReadPosRankSum=0.992;SOR=1.255;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:298,27,0
chr5	1062795	rs67263312	GCTGGGGGGCTGGGGGACTGAGGGA	G	522.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.83;SOR=5.136;VQSLOD=5.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr5	1062900	rs13170649	C	G	1312.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.138;DB;DP=36;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-3.800e-01;SOR=0.739;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:549,0,429
chr5	1063187	rs6863419	T	C	753.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.022;DB;DP=8;ExcessHet=3.0103;FS=4.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=0.992;SOR=2.935;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:339,24,0
chr5	1063998	rs7722287	G	A	4157.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287e+00;DB;DP=119;ExcessHet=6.9897;FS=7.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.75;ReadPosRankSum=0.087;SOR=1.056;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,46:119:99:1289,0,2020
chr5	1065290	rs4362981	A	G	9305.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.61;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;QD=26.02;ReadPosRankSum=0.355;SOR=0.753;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,82:82:99:3689,247,0
chr5	1065297	rs62331176	C	T	5546.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e+00;DB;DP=83;ExcessHet=6.9897;FS=2.557;MQ=59.92;MQRankSum=0.00;QD=19.95;ReadPosRankSum=-4.300e-01;SOR=0.892;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1776,0,1493
chr5	1065298	rs55643147	GAGGGGACACTGAGGAGACACAC	G	3006.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.284e+00;DB;DP=86;ExcessHet=3.9794;FS=1.490;MQ=59.89;MQRankSum=0.934;QD=17.08;ReadPosRankSum=0.978;SOR=0.538;VQSLOD=0.504;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,39:86:99:1489,0,1808
chr5	1065301	rs79273934	G	*,A	5925.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.450e+00;DB;DP=85;ExcessHet=3.0103;FS=1.435;MQ=59.93;MQRankSum=0.00;QD=20.79;ReadPosRankSum=0.186;SOR=0.871;VQSLOD=5.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,39,46:85:99:4006,1968,1809,1663,0,1490
chr5	1065306	.	ACT	*,A	5952.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.022;DP=85;ExcessHet=3.0103;FS=3.031;MQ=59.93;MQRankSum=0.00;QD=20.38;ReadPosRankSum=0.789;SOR=0.972;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,39,46:85:99:3964,1944,1787,1663,0,1493
chr5	1065310	.	A	C,*	5934.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=3.03;DP=85;ExcessHet=3.0103;FS=3.889;MQ=59.93;MQRankSum=0.00;QD=20.25;ReadPosRankSum=-1.482e+00;SOR=1.041;VQSLOD=5.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,46,39:85:99:3964,1663,1493,1944,0,1787
chr5	1065311	.	GGAGACACAC	*,G	5928.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.924e+00;DP=85;ExcessHet=3.0103;FS=4.795;MQ=59.93;MQRankSum=0.00;QD=19.89;ReadPosRankSum=-3.234e+00;SOR=1.072;VQSLOD=3.58;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/2:0,39,46:85:99:3966,1944,1787,1665,0,1493
chr5	1065399	rs737154	C	T	4002.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=181;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-1.895e+00;SOR=0.711;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,81:181:99:2024,0,2586
chr5	1065683	rs56078134	A	C	1364.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.01;DB;DP=55;ExcessHet=3.9794;FS=7.644;MQ=60.00;MQRankSum=0.00;QD=13.37;ReadPosRankSum=-3.570e-01;SOR=1.532;VQSLOD=19.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,24:55:99:0|1:1065683_A_C:676,0,884:1065683
chr5	1065689	rs13186367	C	T	4679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.317e+00;DB;DP=52;ExcessHet=3.0103;FS=1.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.62;ReadPosRankSum=-4.580e-01;SOR=0.978;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:1065683_A_C:1961,156,0:1065683
chr5	1073689	rs10780095	C	T	2293.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=41;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.77;ReadPosRankSum=0.329;SOR=0.747;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:711,0,500
chr5	1074560	rs12523242	A	C	1581.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.090e-01;DB;DP=49;ExcessHet=3.9794;FS=8.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=0.899;SOR=0.247;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:632,0,736
chr5	1074696	rs12515358	G	A	2115.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.796e+00;DB;DP=210;ExcessHet=3.0103;FS=4.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.07;ReadPosRankSum=-2.070e-01;SOR=1.000;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:108,102:210:99:2124,0,2682
chr5	1074921	rs7714914	G	A	3107.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.96;DB;DP=44;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.47;ReadPosRankSum=1.20;SOR=0.897;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1747,132,0
chr5	1076129	rs6866735	T	C	3767.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.61;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.89;ReadPosRankSum=0.096;SOR=2.000;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1407,102,0
chr5	1076459	rs11952124	G	T	5887.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=134;ExcessHet=1.5490;FS=1.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=2.26;SOR=0.832;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,71:134:99:1826,0,1536
chr5	1076521	.	A	ATCCTGTGACCACCT	3610.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DP=40;ExcessHet=3.9794;FS=11.074;MQ=59.91;MQRankSum=0.00;QD=26.95;ReadPosRankSum=-2.154e+00;SOR=2.413;VQSLOD=1.30;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:1076521_A_ATCCTGTGACCACCT:1887,125,0:1076521
chr5	1076524	.	T	TCCA	2872.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DP=31;ExcessHet=3.9794;FS=7.896;MQ=59.89;MQRankSum=0.00;QD=24.56;ReadPosRankSum=-2.223e+00;SOR=2.066;VQSLOD=3.26;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:96:1|1:1076521_A_ATCCTGTGACCACCT:1440,96,0:1076521
chr5	1076526	.	C	CCTGTGACCA	2919.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.18;DP=27;ExcessHet=3.9794;FS=11.284;MQ=59.89;MQRankSum=0.00;QD=26.31;ReadPosRankSum=-2.136e+00;SOR=2.511;VQSLOD=1.11;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:99:1|1:1076521_A_ATCCTGTGACCACCT:1485,99,0:1076521
chr5	1077173	rs113559394	G	GCC	478.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=34.16;SOR=1.765;VQSLOD=5.59;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr5	1078898	rs4975564	A	G	2440.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;DB;DP=63;ExcessHet=1.5490;FS=17.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=-1.812e+00;SOR=2.448;VQSLOD=11.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,33:63:99:870,0,696
chr5	1081174	rs200842557	CAG	C	1062.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=1.33;SOR=0.683;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,16:30:99:405,0,397
chr5	1081190	rs59842467	GAC	G	989.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=34;ExcessHet=1.5490;FS=1.189;MQ=60.00;MQRankSum=0.00;QD=14.34;ReadPosRankSum=-4.510e-01;SOR=0.466;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,16:34:99:410,0,499
chr5	1081228	rs56033432	GAA	G	5551.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.92;DB;DP=55;ExcessHet=3.0103;FS=0.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.09;ReadPosRankSum=0.524;SOR=0.791;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2428,166,0
chr5	1081702	rs6865765	A	G	8837.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DB;DP=226;ExcessHet=6.9897;FS=2.464;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=0.128;SOR=0.553;VQSLOD=6.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,97:226:99:2307,0,3260
chr5	1081767	rs4526148	C	T	7559.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=311;ExcessHet=3.9794;FS=0.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.224;SOR=0.643;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:136,175:311:99:4220,0,2902
chr5	1084074	rs79985128	G	A	577.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-02;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.60;ReadPosRankSum=-6.790e-01;SOR=0.600;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:256,0,363
chr5	1085183	rs10866480	T	C	895.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.246e+00;DB;DP=5;ExcessHet=3.0103;FS=5.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.14;ReadPosRankSum=-9.800e-02;SOR=3.180;VQSLOD=17.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr5	1085604	rs11133624	C	A	5141.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=183;ExcessHet=3.9794;FS=1.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.591;SOR=0.832;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,93:183:99:2761,0,2367
chr5	1086738	rs77314253	G	A	127.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=5;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=-5.240e-01;SOR=0.120;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:60:75,0,60
chr5	1093467	rs7721352	G	A	326.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.742;DB;DP=2;ExcessHet=1.5490;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=-1.440e+00;SOR=3.816;VQSLOD=14.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	1093609	rs56276350	G	GGGGCGGGGACT	2784.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.500e-02;DB;DP=23;ExcessHet=3.0103;FS=7.184;MQ=59.95;MQRankSum=0.630;POSITIVE_TRAIN_SITE;QD=29.32;ReadPosRankSum=1.36;SOR=1.832;VQSLOD=0.416;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,23:23:77:1161,77,0
chr5	1093860	rs6883411	C	G	2976.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.528e+00;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.45;ReadPosRankSum=1.20;SOR=0.761;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,47:47:99:1|1:1093860_C_G:2105,141,0:1093860
chr5	1093861	rs6883412	C	T	2976.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.866e+00;DB;DP=46;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.62;ReadPosRankSum=1.21;SOR=0.900;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,46:46:99:1|1:1093860_C_G:2105,141,0:1093860
chr5	1096874	.	GGAA	G	1185.40	PASS	AC=2;AF=1.00;AN=2;DP=23;ExcessHet=0.4576;FS=0.000;MQ=59.55;QD=27.45;SOR=6.869;VQSLOD=4.96;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:78:1|1:1096874_GGAA_G:1113,78,0:1096874
chr5	1096881	.	AAGGAGGGAGGGGGGGAGGGAGGGAAGGAAGGAGGGAGGGAAGGAAGGAGGGAAGGGAGGGAAGGAAGGAGGGAGGGAG	A	1248.40	PASS	AC=2;AF=1.00;AN=2;DP=27;ExcessHet=0.4576;FS=0.000;MQ=59.68;QD=32.85;SOR=7.328;VQSLOD=6.12;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,27:27:81:1|1:1096874_GGAA_G:1156,81,0:1096874
chr5	1160037	rs35355741	T	C	632.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.310e-01;DB;DP=17;ExcessHet=3.9794;FS=1.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.21;ReadPosRankSum=1.94;SOR=0.350;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:224,0,283
chr5	1160673	rs12654465	A	G	120.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.250e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-2.040e-01;SOR=0.412;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:129,0,213
chr5	1160730	rs73031190	C	G	99.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=0.431;SOR=0.330;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:47:47,0,114
chr5	1208964	rs60992377	T	C	3155.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540e-01;DB;DP=60;ExcessHet=3.9794;FS=1.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.010;SOR=0.549;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:763,0,780
chr5	1209063	rs72709422	A	T	858.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.50;ReadPosRankSum=0.207;SOR=0.693;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:361,0,229
chr5	1212647	rs13180809	C	T	1508.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.26;DB;DP=39;ExcessHet=3.9794;FS=2.134;MQ=60.00;MQRankSum=0.00;QD=17.54;ReadPosRankSum=2.20;SOR=1.279;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,20:39:99:693,0,570
chr5	1213510	rs77928413	C	T	874.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=12;ExcessHet=1.5490;FS=2.470;MQ=59.20;MQRankSum=-3.490e-01;NEGATIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=1.10;SOR=0.359;VQSLOD=-1.027e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:155,0,191
chr5	1214005	rs138649942	CCCT	C	5070.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=67;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.50;ReadPosRankSum=1.09;SOR=0.892;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1508,0,1370
chr5	1214264	rs6554663	A	G	15110.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.42;SOR=1.943;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5363,477,0
chr5	1216775	rs4975629	A	G	30584.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=367;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=0.137;SOR=0.931;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,365:367:99:11096,1052,0
chr5	1216900	rs35329108	G	A	3654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=300;ExcessHet=3.0103;FS=6.156;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-1.580e-01;SOR=1.023;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:162,138:300:99:3663,0,4143
chr5	1219258	rs62331283	G	C	1990.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.860e-01;DB;DP=71;ExcessHet=3.9794;FS=1.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=-8.180e-01;SOR=0.535;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,34:71:99:0|1:1219258_G_C:945,0,1034:1219258
chr5	1219316	rs6554668	C	T	3564.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.85;POSITIVE_TRAIN_SITE;QD=31.01;SOR=4.929;VQSLOD=3.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:1219258_G_C:925,66,0:1219258
chr5	1219874	rs6869718	G	A	7584.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=2.551;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2189,185,0
chr5	1220010	rs11746437	C	G	423.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=0.212;SOR=0.622;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:79,0,67
chr5	1221199	rs12513763	T	C	11846.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=2.024;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3297,297,0
chr5	1225394	rs10061504	T	C	256.75	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=1.609;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr5	1225434	rs7704882	C	T	576.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.93;ReadPosRankSum=0.967;SOR=1.402;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:73,0,31
chr5	1225564	rs7728646	T	C	2408.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.065;DB;DP=31;ExcessHet=3.0103;FS=3.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=-8.220e-01;SOR=1.312;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,18:31:99:483,0,342
chr5	1225613	rs7704058	G	A	3314.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.95;ReadPosRankSum=1.26;SOR=0.691;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:725,0,624
chr5	1225626	rs7728667	T	A	3903.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.975e+00;DB;DP=61;ExcessHet=3.0103;FS=0.817;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.20;ReadPosRankSum=0.407;SOR=0.617;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,34:61:99:882,0,751
chr5	1225687	rs7705355	C	T	8921.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.23;SOR=0.882;VQSLOD=19.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2987,252,0
chr5	1225688	rs7728814	T	C	7048.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.48;ReadPosRankSum=0.528;SOR=0.681;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,42:84:99:1115,0,909
chr5	1225703	rs7724858	A	G	7542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=0.745;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2575,252,0
chr5	1232491	rs4975623	G	C	6312.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=34.69;SOR=1.046;VQSLOD=4.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1985,171,0
chr5	1232666	rs4975622	A	C	2195.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=0.264;SOR=0.635;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,7:33:99:179,0,752
chr5	1240848	rs6554684	A	C	4050.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.315e+00;DB;DP=88;ExcessHet=6.9897;FS=1.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.628;SOR=0.569;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,50:88:99:1347,0,1050
chr5	1243009	rs7721679	A	G	12455.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.231e+00;DB;DP=120;ExcessHet=3.0103;FS=1.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=0.121;SOR=0.966;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,120:120:99:4396,360,0
chr5	1244425	rs4073918	C	T	6104.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=161;ExcessHet=6.9897;FS=0.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=-5.210e-01;SOR=0.794;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,90:161:99:2194,0,1847
chr5	1245073	rs10623391	C	CCT	526.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=-8.410e-01;SOR=0.527;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:80:204,0,80
chr5	1271524	rs11133719	T	C	3752.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=5.933;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1016,84,0
chr5	1278556	rs112536335	C	CCA	778.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.79;SOR=4.615;VQSLOD=4.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:66:795,66,0
chr5	1279790	rs10069690	C	T	729.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.185e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-5.470e-01;SOR=1.085;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
chr5	1280028	rs2242652	G	A	236.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=1.609;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:253,21,0
chr5	1280128	rs7734992	T	C	2928.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.64;SOR=5.756;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:818,63,0
chr5	1282414	rs7725218	G	A	723.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.60;SOR=5.892;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:324,24,0
chr5	1294086	rs2736098	C	T	13574.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=396;ExcessHet=6.9897;FS=0.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-6.200e-01;SOR=0.753;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:192,204:396:99:5388,0,4579
chr5	1309168	rs61574973	T	C	54.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.84;ReadPosRankSum=0.712;SOR=0.223;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,180
chr5	1320722	rs402710	C	T	2324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=60;ExcessHet=6.9897;FS=4.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-4.160e-01;SOR=1.151;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,27:60:99:791,0,867
chr5	1321873	rs10073340	C	T	3183.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=256;ExcessHet=3.0103;FS=5.027;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.525;SOR=0.997;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,123:256:99:3192,0,3186
chr5	1322087	rs401681	C	T	585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.087e+00;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-8.170e-01;SOR=1.528;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:119,0,321
chr5	1323196	rs410805	T	C	1203.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=19;ExcessHet=3.9794;FS=1.293;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-7.350e-01;SOR=0.490;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,9:19:99:0|1:1323196_T_C:348,0,525:1323196
chr5	1323212	rs13178866	C	T	851.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.437;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.30;ReadPosRankSum=-4.460e-01;SOR=0.674;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,8:18:99:0|1:1323196_T_C:306,0,514:1323196
chr5	1324121	rs414965	G	A	646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.271e+00;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.062;SOR=0.502;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:316,0,246
chr5	1325767	rs466502	A	G	908.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.236e+00;DB;DP=28;ExcessHet=6.9897;FS=8.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-3.950e-01;SOR=0.070;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:360,0,514
chr5	1325803	rs465498	A	G	1527.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.977e+00;DB;DP=55;ExcessHet=6.9897;FS=2.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=-2.520e-01;SOR=0.471;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,33:55:99:882,0,597
chr5	1330253	rs452932	T	C	6050.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-02;DB;DP=149;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=-6.000e-03;SOR=0.707;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,83:149:99:2451,0,1752
chr5	1334332	.	AC	A	150.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DP=16;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;QD=9.39;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=5.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:159,0,268
chr5	1334507	rs5865369	GA	G	1438.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.390e-01;DB;DP=35;ExcessHet=6.9897;FS=0.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.11;ReadPosRankSum=1.65;SOR=0.569;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,17:35:99:399,0,417
chr5	1337906	rs31484	A	T	451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=1.07;SOR=0.460;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:63:63,0,179
chr5	1344458	rs31490	G	A	2382.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=124;ExcessHet=3.9794;FS=1.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.168;SOR=0.603;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,58:124:99:1394,0,1576
chr5	1393878	rs6876890	G	A	1639.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.030e-01;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=59.59;MQRankSum=1.31;QD=23.10;ReadPosRankSum=1.15;SOR=0.680;VQSLOD=-4.190e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,22:36:99:523,0,353
chr5	1394600	rs11564774	C	G	833.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=10;ExcessHet=1.5490;FS=3.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.07;ReadPosRankSum=0.497;SOR=2.093;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:186,0,170
chr5	1394815	rs1042098	A	G	3301.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.097e+00;DB;DP=78;ExcessHet=1.5490;FS=0.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=-1.138e+00;SOR=0.796;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,46:78:99:1110,0,757
chr5	1400845	rs28363150	C	T	714.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.301;DB;DP=42;ExcessHet=3.0103;FS=1.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=-2.030e-01;SOR=0.297;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:723,0,589
chr5	1401580	rs11133767	C	T	1183.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.82;ReadPosRankSum=-2.300e-01;SOR=3.258;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:42:327,0,42
chr5	1408979	rs11133770	A	C	282.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.280e-01;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=1.58;SOR=1.802;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:96:136,0,96
chr5	1409127	rs429699	T	C	7721.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.52;SOR=1.397;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2647,267,0
chr5	1409985	rs8179029	C	T	4396.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.51;DB;DP=91;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=-4.890e-01;SOR=0.650;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,43:91:99:1156,0,1245
chr5	1410613	rs11564762	G	T	515.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=11;ExcessHet=1.5490;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.79;ReadPosRankSum=-2.484e+00;SOR=3.258;VQSLOD=16.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:164,0,206
chr5	1411256	rs2550936	A	C	1490.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=29;ExcessHet=3.9794;FS=2.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=1.13;SOR=1.121;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:337,0,517
chr5	1411412	rs6347	T	C	3308.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.386e+00;DB;DP=101;ExcessHet=1.5490;FS=2.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=-1.080e+00;SOR=0.648;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1217,0,1290
chr5	1416142	rs40358	C	A	7849.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.201;DB;DP=140;ExcessHet=3.9794;FS=1.969;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=0.564;SOR=0.536;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4318,419,0
chr5	1420476	rs28382245	C	T	458.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.088e+00;DB;DP=46;ExcessHet=3.0103;FS=1.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-1.275e+00;SOR=0.412;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:467,0,749
chr5	1420588	rs11564758	C	G	1478.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=119;ExcessHet=3.0103;FS=1.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=1.70;SOR=0.907;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,54:119:99:1487,0,1523
chr5	1432825	rs460000	G	T	2198.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.040e-01;DB;DP=161;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=1.15;SOR=0.737;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,86:161:99:2207,0,1890
chr5	1432876	rs465130	G	A	1686.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.899;DB;DP=74;ExcessHet=3.0103;FS=2.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=0.061;SOR=0.431;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,44:74:99:0|1:1432876_G_A:1695,0,1103:1432876
chr5	1432881	rs465989	C	T	1583.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874e+00;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=-1.040e-01;SOR=0.621;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:27,39:66:99:0|1:1432876_G_A:1592,0,1049:1432876
chr5	1432966	rs3842031	A	AG	148.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.203;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=1.64;SOR=0.399;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:157,0,265
chr5	1442974	rs2254408	C	A	5303.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.080e-01;DB;DP=98;ExcessHet=3.9794;FS=1.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.299;SOR=0.842;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,45:98:99:1053,0,1308
chr5	1443199	rs6350	G	A	2011.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.860e-01;DB;DP=145;ExcessHet=3.0103;FS=2.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=1.56;SOR=0.880;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,85:145:99:2020,0,1459
chr5	1443603	rs2975223	T	C	862.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=8;ExcessHet=3.9794;FS=1.978;MQ=60.00;MQRankSum=0.00;QD=27.84;ReadPosRankSum=1.95;SOR=0.278;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:1443603_T_C:360,24,0:1443603
chr5	1443604	rs2937640	C	T	862.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.413e+00;DB;DP=8;ExcessHet=3.9794;FS=1.978;MQ=60.00;MQRankSum=0.00;QD=27.84;ReadPosRankSum=1.95;SOR=0.278;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:1443603_T_C:360,24,0:1443603
chr5	1464028	rs6876662	C	T	3589.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.480e-01;DB;DP=90;ExcessHet=1.5490;FS=1.624;MQ=59.90;MQRankSum=-1.285e+00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=0.130;SOR=0.949;VQSLOD=1.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,49:90:99:1435,0,1099
chr5	1466686	rs2277008	G	C	3206.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.79;SOR=8.739;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1451,105,0
chr5	1466813	rs2277007	T	C	16665.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=272;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=1.514;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,272:272:99:8646,816,0
chr5	1466919	rs2277006	G	A	9356.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=390;ExcessHet=3.9794;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.297;SOR=0.588;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:194,196:390:99:4485,0,4659
chr5	1470692	rs72717518	C	T	135.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=1.98;SOR=0.527;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:144,0,181
chr5	1470900	rs2277005	G	A	10771.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=232;ExcessHet=1.5490;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-1.911e+00;SOR=0.686;VQSLOD=6.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,132:232:99:3297,0,2185
chr5	1471109	rs27054	T	C	7920.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.329e+00;DB;DP=81;ExcessHet=3.0103;FS=3.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.85;ReadPosRankSum=0.964;SOR=1.131;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2745,243,0
chr5	1473977	rs27056	A	G	1206.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.596e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=0.944;SOR=1.931;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:416,33,0
chr5	1479678	rs27059	G	C	3247.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.025e+00;DB;DP=34;ExcessHet=3.0103;FS=3.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=-5.430e-01;SOR=0.293;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1131,101,0
chr5	1481148	rs2447846	A	C	4088.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.17;ReadPosRankSum=1.14;SOR=0.737;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2919,243,0
chr5	1481263	rs10037459	G	A	248.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.589;SOR=1.259;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:136,0,192
chr5	1489706	rs2277003	A	G	838.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.286e+00;DB;DP=9;ExcessHet=6.9897;FS=3.372;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.78;ReadPosRankSum=-4.100e-02;SOR=1.936;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:53:238,0,53
chr5	1490019	rs72717531	C	G	2055.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=138;ExcessHet=3.0103;FS=1.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=-8.420e-01;SOR=0.850;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,78:138:99:2064,0,1372
chr5	1490124	rs10475025	A	C	1500.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.08;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=0.914;SOR=0.934;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:599,0,252
chr5	1494764	rs3733797	C	T	1332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570e+00;DB;DP=95;ExcessHet=3.0103;FS=0.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-6.180e-01;SOR=0.843;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,48:95:99:1341,0,1366
chr5	1501790	rs1979396	T	C	9895.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.26;ReadPosRankSum=1.14;SOR=0.722;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,57:117:99:1525,0,1325
chr5	1568463	rs13188792	T	C	7021.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=96;ExcessHet=3.0103;FS=0.653;MQ=59.97;MQRankSum=-1.045e+00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=0.836;SOR=0.784;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3101,287,0
chr5	1569212	rs7713810	C	T	833.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=50.00;MQRankSum=-3.660e-01;NEGATIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=0.178;SOR=0.941;VQSLOD=-2.861e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
chr5	1574523	rs146055310	TCCA	T	4244.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.525;DB;DP=31;ExcessHet=3.0103;FS=0.996;MQ=32.90;MQRankSum=-3.560e-01;QD=33.96;ReadPosRankSum=0.541;SOR=0.582;VQSLOD=0.385;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1395,93,0
chr5	1589751	rs4975666	A	G	412.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=56.39;MQRankSum=1.47;NEGATIVE_TRAIN_SITE;QD=24.26;ReadPosRankSum=-2.189e+00;SOR=1.148;VQSLOD=-2.772e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:140,15,0
chr5	1593246	rs6869310	C	T	7165.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.480e-01;DB;DP=323;ExcessHet=3.9794;FS=0.000;MQ=57.83;MQRankSum=-6.178e+00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.261;SOR=0.726;VQSLOD=-2.125e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:172,151:323:99:3537,0,4173
chr5	1593266	rs6898538	T	C	7545.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-02;DB;DP=342;ExcessHet=3.9794;FS=0.000;MQ=58.43;MQRankSum=-6.834e+00;QD=11.06;ReadPosRankSum=-8.430e-01;SOR=0.718;VQSLOD=-3.557e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:185,157:342:99:3591,0,4680
chr5	1593326	rs6872202	G	A	6890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=309;ExcessHet=3.9794;FS=1.112;MQ=59.50;MQRankSum=-7.770e-01;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.78;SOR=0.787;VQSLOD=0.228;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:175,134:309:99:3235,0,4232
chr5	1594664	rs4246747	C	G	6910.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DB;DP=112;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=0.457;SOR=0.667;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,53:112:99:1323,0,1542
chr5	1616527	rs113154760	G	C	987.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=34;ExcessHet=3.9794;FS=2.404;MQ=60.00;MQRankSum=0.00;QD=16.45;ReadPosRankSum=-1.040e-01;SOR=0.426;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,20:34:99:578,0,384
chr5	1629701	rs6888910	G	A	400.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e-01;DB;DP=14;ExcessHet=6.9897;FS=5.153;MQ=55.52;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.712;SOR=0.193;VQSLOD=-1.345e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,11:14:71:275,0,71
chr5	1708983	rs12523324	G	A	7190.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.030e-01;DB;DP=102;ExcessHet=3.0103;FS=0.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.71;ReadPosRankSum=-3.100e-01;SOR=0.616;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3103,303,0
chr5	1799001	rs114776273	T	G	623.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=54;ExcessHet=3.0103;FS=1.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=0.373;SOR=0.864;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:632,0,608
chr5	1799321	rs2291944	T	C	334.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=4.804;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr5	1801426	rs13176353	G	C	6402.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.48;SOR=1.939;VQSLOD=18.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,50:50:99:1|1:1801426_G_C:2337,157,0:1801426
chr5	1801427	rs34372448	C	CG	6514.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.76;SOR=1.939;VQSLOD=5.71;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,50:50:99:1|1:1801426_G_C:2362,160,0:1801426
chr5	1801432	rs11745573	A	G	6464.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.19;SOR=1.885;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,52:52:99:1|1:1801426_G_C:2320,157,0:1801426
chr5	1801689	rs2242412	A	C	7808.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.99;SOR=1.039;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2586,255,0
chr5	1802229	rs1845288	C	T	708.88	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=5.892;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	1814395	rs36074605	TTGTA	T	8213.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=28.12;SOR=2.226;VQSLOD=5.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2790,187,0
chr5	1814783	rs4147773	T	C	5065.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=2.318;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1203,117,0
chr5	1878021	rs2279588	G	A	421.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.831e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-1.480e-01;SOR=0.484;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,78
chr5	1879228	rs10475118	C	T	224	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.00;ReadPosRankSum=0.524;SOR=0.693;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr5	1880865	rs4975753	T	C	7540.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.402e+00;DB;DP=262;ExcessHet=6.9897;FS=0.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.233;SOR=0.633;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,125:262:99:2883,0,3401
chr5	1880891	rs2232376	C	T	6668.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=290;ExcessHet=3.9794;FS=1.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=2.68;SOR=0.783;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:140,150:290:99:3544,0,3225
chr5	1881170	rs71871413	CCGGTGGGGGGGGG	C	639.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.78;SOR=4.047;VQSLOD=5.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:4:46,4,0
chr5	1881733	rs260402	T	C	2040.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.17;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.40;ReadPosRankSum=2.83;SOR=2.904;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:994,75,0
chr5	1881916	rs2307118	A	C	13084.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=358;ExcessHet=6.9897;FS=1.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-3.010e-01;SOR=0.852;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:177,181:358:99:4521,0,4270
chr5	1882129	rs2232374	T	G	8664.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=186;ExcessHet=6.9897;FS=1.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-1.000e-02;SOR=0.867;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,97:186:99:2947,0,2535
chr5	1882280	rs2232373	C	G	1226.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.85;DB;DP=27;ExcessHet=6.9897;FS=6.178;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.276;SOR=2.833;VQSLOD=17.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:494,0,377
chr5	1882386	rs260401	C	G	327.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=5;ExcessHet=3.9794;FS=3.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=0.652;SOR=0.132;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:169,15,0
chr5	1882443	rs4975756	T	C	154.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=-1.383e+00;SOR=1.022;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,37
chr5	1882579	rs4975757	G	A	188.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=8;ExcessHet=4.7712;FS=1.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.49;ReadPosRankSum=0.298;SOR=1.371;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:56:56,0,153
chr5	1882900	rs6876836	C	T	397.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.57;SOR=4.804;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr5	2747433	rs34380307	AT	A	1061.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.153;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.31;ReadPosRankSum=0.610;SOR=0.469;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:42:1|1:2747433_AT_A:460,42,0:2747433
chr5	2747436	rs201221127	T	A	755.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.973e+00;DB;DP=14;ExcessHet=6.9897;FS=1.934;MQ=60.00;MQRankSum=0.00;QD=13.26;SOR=1.121;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,6:14:99:0|1:2747433_AT_A:151,0,237:2747433
chr5	2749057	rs76906087	C	A	4939.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.230;DB;DP=438;ExcessHet=3.0103;FS=1.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-1.160e-01;SOR=0.610;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:232,206:438:99:4948,0,5844
chr5	2755031	rs62333234	A	G	907.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=-1.269e+00;SOR=0.536;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:306,0,278
chr5	2755485	rs62333235	C	T	3553.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.600e-01;DB;DP=351;ExcessHet=3.0103;FS=4.092;MQ=59.95;MQRankSum=-1.170e-01;POSITIVE_TRAIN_SITE;QD=10.12;ReadPosRankSum=-1.011e+00;SOR=0.914;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:190,161:351:99:3562,0,4450
chr5	3595978	rs6420041	G	A	191.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.54;SOR=1.981;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr5	3600334	rs844154	T	C	24697.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=233;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.24;SOR=1.968;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,233:233:99:7596,700,0
chr5	3610658	rs1373997	T	C	1134.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270e+00;DB;DP=16;ExcessHet=3.9794;FS=3.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.02;ReadPosRankSum=0.600;SOR=0.264;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,12:16:99:317,0,114
chr5	4087485	rs6869319	G	T	5103.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.31;SOR=1.524;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1651,155,0
chr5	4095307	.	C	CAT	96.87	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=1.179;VQSLOD=4.64;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:11:113,11,0
chr5	4095642	rs72043926	T	TCTTTC	259.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=4;ExcessHet=1.5490;FS=4.826;MQ=59.58;MQRankSum=0.00;QD=5.09;ReadPosRankSum=0.973;SOR=2.249;VQSLOD=4.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:8:171,8,0
chr5	4095679	.	T	TTTTCTTTTCTTTTC,TTTTCTTTTCTTTTCTTTCTTTC	209.17	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=55.66;POSITIVE_TRAIN_SITE;QD=29.12;SOR=3.258;VQSLOD=6.31;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,2:4:76:229,128,119,86,0,76
chr5	4403959	rs11952359	C	G	1055.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=81;ExcessHet=3.0103;FS=4.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.095;SOR=1.067;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,37:81:99:1064,0,1139
chr5	4404314	rs11383896	G	GT	368.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.462;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-9.240e-01;SOR=0.693;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,12:24:99:377,0,368
chr5	4404351	rs7380589	G	C	2239.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=7.941;VQSLOD=24.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:483,33,0
chr5	4419912	rs13181135	C	T	167.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:70,0,65
chr5	4420188	rs140931368	G	GTGTA	4213.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.141e+00;DB;DP=30;ExcessHet=3.0103;FS=7.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.31;ReadPosRankSum=-1.220e-01;SOR=0.185;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,30:30:89:1271,89,0
chr5	4420716	rs13186177	C	T	588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=0.062;SOR=0.249;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:355,0,217
chr5	4702347	.	GT	G	330.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DP=30;ExcessHet=6.9897;FS=0.844;MQ=60.00;MQRankSum=0.00;QD=3.72;ReadPosRankSum=1.28;SOR=0.804;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,7:30:99:113,0,557
chr5	4702349	.	GTGT	GGT,G	2601.35	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.348e+00;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=1.52;SOR=0.453;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,23,7:30:99:1285,214,113,646,0,557
chr5	4702351	rs57238946	GT	*,G	1900.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.748e+00;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=1.65;SOR=0.453;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,23:30:99:1285,646,557,214,0,113
chr5	4702461	rs4315900	C	T	2687.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.60;SOR=1.923;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:780,66,0
chr5	4930051	rs27416	G	T	3109.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=2.303;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:4930051_G_T:880,60,0:4930051
chr5	4930087	rs147939241	G	GTGAA	2736.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=30;ExcessHet=3.9794;FS=4.928;MQ=60.00;MQRankSum=0.00;QD=23.00;ReadPosRankSum=1.34;SOR=1.210;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:96:1|1:4930051_G_T:1387,96,0:4930051
chr5	4930144	rs35167763	AAG	A	4029.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.17;DB;DP=45;ExcessHet=3.9794;FS=1.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=0.303;SOR=0.823;VQSLOD=7.54;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:4930144_AAG_A:2016,136,0:4930144
chr5	4930181	rs560366	C	T	3870.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.701;DB;DP=44;ExcessHet=3.9794;FS=2.862;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=-4.180e-01;SOR=0.595;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:4930144_AAG_A:1959,135,0:4930144
chr5	4930407	rs30452	C	T	424.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292e+00;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=2.37;SOR=1.739;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr5	5140632	rs270208	T	C	522.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=1.061;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:539,51,0
chr5	5140713	rs72647738	C	G	415.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-01;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=-2.960e-01;SOR=0.785;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,18:43:99:424,0,691
chr5	5140958	rs270207	T	A	2128.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.05;SOR=1.302;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2145,168,0
chr5	5140970	rs270206	C	T	2411.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=52;ExcessHet=6.9897;FS=3.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-3.580e-01;SOR=0.990;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,32:52:99:775,0,448
chr5	5141009	rs59628659	CT	C	1114.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.078;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.03;ReadPosRankSum=-5.630e-01;SOR=0.554;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:184,0,183
chr5	5141091	rs270205	T	C	908.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.66;ReadPosRankSum=1.44;SOR=1.473;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:134,0,180
chr5	5141134	rs67220167	G	A	94.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=0.598;SOR=2.093;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:103,0,111
chr5	5146200	rs1863969	A	T	8429.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.69;SOR=1.513;VQSLOD=5.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2401,237,0
chr5	5146223	rs1871468	G	C	10221.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=32.14;SOR=1.271;VQSLOD=4.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2600,249,0
chr5	5146335	rs2086310	C	G	10035.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.340e-01;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=0.051;SOR=0.646;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,47:87:99:1280,0,1088
chr5	5146377	rs1019747	T	C	2761.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=0.718;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2778,243,0
chr5	5186415	.	GT	G	290.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.14;ReadPosRankSum=0.204;SOR=0.180;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:5186415_GT_G:299,0,439:5186415
chr5	5186417	.	GT	G	290.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.15;ReadPosRankSum=0.102;SOR=0.180;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,8:16:99:0|1:5186415_GT_G:299,0,439:5186415
chr5	5187776	rs1863972	G	A	6807.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DB;DP=79;ExcessHet=3.0103;FS=2.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.08;ReadPosRankSum=0.669;SOR=0.495;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,32:79:99:814,0,1308
chr5	5189950	rs6859975	G	A	3890.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DB;DP=44;ExcessHet=3.0103;FS=3.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=-5.380e-01;SOR=1.114;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,18:44:99:433,0,695
chr5	5190182	rs34105281	C	T	714.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=104;ExcessHet=3.0103;FS=4.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.87;ReadPosRankSum=-1.827e+00;SOR=1.175;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,33:104:99:723,0,1714
chr5	5200220	rs58639468	A	ATCTC	5235.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=85;ExcessHet=3.0103;FS=1.270;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=0.736;SOR=0.813;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,34:85:99:1274,0,2376
chr5	5200281	rs6555335	C	T	5827.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.184e+00;DB;DP=97;ExcessHet=3.0103;FS=1.179;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.41;ReadPosRankSum=-2.093e+00;SOR=0.805;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,41:97:99:979,0,1541
chr5	5209210	rs16875054	G	A	1349.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.938;DB;DP=35;ExcessHet=3.9794;FS=1.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.83;ReadPosRankSum=0.156;SOR=0.484;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,22:35:99:599,0,283
chr5	5223073	rs12652968	A	G	957.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=39;ExcessHet=3.9794;FS=0.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.249;SOR=0.865;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:532,0,543
chr5	5232301	rs10713189	GA	G	1539.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.74;ReadPosRankSum=0.360;SOR=0.871;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,11:16:95:268,0,95
chr5	5232346	rs2913623	G	A	3394.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.134e+00;DB;DP=43;ExcessHet=3.9794;FS=1.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=1.04;SOR=0.874;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:519,0,732
chr5	5232356	rs150710468	AGG	A	4783.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=47;ExcessHet=3.9794;FS=2.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.34;ReadPosRankSum=0.544;SOR=0.960;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,22:47:99:831,0,942
chr5	5232398	rs2913624	G	A	5017.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774e+00;DB;DP=77;ExcessHet=3.9794;FS=4.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=-8.380e-01;SOR=0.458;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:933,0,1033
chr5	5232832	rs67447053	T	C	181.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=1;ExcessHet=1.5490;FS=0.000;MQ=58.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=1.28;SOR=0.941;VQSLOD=0.690;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:3:32,3,0
chr5	5235096	rs2913631	A	G	1787.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=25;ExcessHet=3.9794;FS=5.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=0.00;SOR=0.263;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,12:25:99:338,0,339
chr5	5239743	.	C	T	518.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892e+00;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.70;ReadPosRankSum=-1.331e+00;SOR=0.435;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:527,0,390
chr5	5239921	rs11742341	C	T	2820.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DB;DP=107;ExcessHet=3.9794;FS=4.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=0.969;SOR=0.914;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,55:107:99:1420,0,1272
chr5	5240002	rs11742370	C	A	1712.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.46;DB;DP=66;ExcessHet=3.9794;FS=15.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.417;SOR=1.873;VQSLOD=12.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,32:66:99:950,0,886
chr5	5241951	rs33913322	A	AG	188.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.936;SOR=0.425;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:116,0,151
chr5	5241956	rs10634612	C	CAA	1196.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.69;SOR=6.593;VQSLOD=6.28;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:30:445,30,0
chr5	5241968	rs2081850	T	A	306.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.782e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=1.07;SOR=0.387;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:193,0,245
chr5	5242440	rs55706045	G	A	358.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=1.53;SOR=0.540;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:91:91,0,376
chr5	5303265	rs11949096	G	T	237.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=3.912;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr5	5303349	rs11959893	T	C	1464.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.222e+00;DB;DP=15;ExcessHet=3.0103;FS=1.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=0.286;SOR=1.333;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:549,45,0
chr5	5303614	rs11134110	C	T	4333.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=139;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=1.001;VQSLOD=20.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4350,416,0
chr5	5460569	rs2578565	C	T	1880.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.35;ReadPosRankSum=0.641;SOR=1.334;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:673,63,0
chr5	5460619	rs2619844	G	C	3007.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.828e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.66;ReadPosRankSum=-1.442e+00;SOR=0.677;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1153,102,0
chr5	5462148	rs2578500	G	A	4822.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=58;ExcessHet=3.0103;FS=0.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=1.99;SOR=0.605;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1805,173,0
chr5	5476250	rs11416699	T	TG	3806.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.700e-02;DB;DP=50;ExcessHet=3.0103;FS=0.909;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=0.364;SOR=0.896;VQSLOD=7.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1539,150,0
chr5	6020374	rs464221	A	G	1840.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172e+00;DB;DP=40;ExcessHet=6.9897;FS=1.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.712;SOR=0.555;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,17:40:99:401,0,624
chr5	6020418	rs457263	T	G	1626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.410e-01;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-6.730e-01;SOR=0.752;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:377,0,478
chr5	6020488	rs412953	C	T	777.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=15;ExcessHet=6.9897;FS=5.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.478;SOR=1.960;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:121,0,313
chr5	6020603	rs462105	A	G	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:61,0,75
chr5	6312613	rs376858383	G	C	1855.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=185;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;QD=10.03;ReadPosRankSum=-8.130e-01;SOR=0.681;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,82:185:99:1864,0,2356
chr5	6312844	rs111416070	CCACACACA	C,CCA	1683.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.479;DB;DP=17;ExcessHet=3.9794;FS=5.040;MQ=60.00;MQRankSum=0.00;QD=27.14;ReadPosRankSum=1.99;SOR=2.331;VQSLOD=4.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,12:17:99:1132,415,333,243,0,165
chr5	6312879	.	C	G	1509.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170e+00;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.01;ReadPosRankSum=1.45;SOR=1.893;VQSLOD=5.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,14:17:49:490,0,49
chr5	6337065	rs147195078	T	TACACACACACACACACACACAC	1166.99	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=5;ExcessHet=3.9794;FS=3.222;MQ=59.46;MQRankSum=0.00;QD=27.79;ReadPosRankSum=0.00;SOR=1.839;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:27:405,27,0
chr5	6372585	rs9451	A	G	84.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.180;SOR=0.495;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:93:93,0,143
chr5	6378614	rs7723985	G	C	25066.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=273;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=1.173;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,273:273:99:8562,818,0
chr5	6600492	.	G	GT	984.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.498;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=0.078;SOR=1.542;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:6600492_G_GT:360,24,0:6600492
chr5	6600498	rs11325322	GA	G	984.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.030e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.96;ReadPosRankSum=-5.420e-01;SOR=1.839;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:6600492_G_GT:360,24,0:6600492
chr5	6602544	rs2303711	T	C	5705.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.380e-01;DB;DP=52;ExcessHet=3.0103;FS=6.512;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.101;SOR=1.231;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1773,156,0
chr5	6604205	rs2303709	A	G	3197.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=65;ExcessHet=1.5490;FS=0.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.62;ReadPosRankSum=-1.629e+00;SOR=0.777;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1962,195,0
chr5	6604533	rs33910823	AC	A	507.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.016e+00;DB;DP=4;ExcessHet=3.0103;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=-2.410e-01;SOR=0.662;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:122,12,0
chr5	6604787	rs13181449	C	T	1952.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=49;ExcessHet=1.5490;FS=4.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=-1.870e-01;SOR=0.349;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1435,147,0
chr5	6604931	rs6889694	C	T	1259.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.30;ReadPosRankSum=-8.120e-01;SOR=0.804;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:477,39,0
chr5	6604970	rs6888601	G	A	828.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=-3.190e-01;SOR=2.753;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:342,30,0
chr5	6605271	rs506416	G	A	1204.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.881e+00;DB;DP=13;ExcessHet=3.0103;FS=8.451;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.43;ReadPosRankSum=-2.260e+00;SOR=5.042;VQSLOD=11.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:547,39,0
chr5	6605532	rs2303707	C	A	6084.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.988;DB;DP=62;ExcessHet=3.0103;FS=2.420;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=-1.990e-01;SOR=0.983;VQSLOD=7.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,60:62:99:1793,135,0
chr5	6606810	rs3996725	TAAA	T	687.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.960e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.23;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=-1.890e-01;SOR=0.941;VQSLOD=2.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr5	6607125	rs3217325	GAAC	G	8540.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.488e+00;DB;DP=69;ExcessHet=3.0103;FS=3.054;MQ=59.99;MQRankSum=0.988;POSITIVE_TRAIN_SITE;QD=32.38;ReadPosRankSum=0.274;SOR=0.473;VQSLOD=0.911;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,69:69:99:3064,208,0
chr5	6610237	rs1560148	T	C	123.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=1.179;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr5	6611561	rs10640512	T	TAAAAAA	163.04	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.876;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=59.40;MQRankSum=-1.068e+00;QD=23.29;ReadPosRankSum=-3.660e-01;SOR=1.270;VQSLOD=0.336;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,1:1:9:106,9,0
chr5	6611757	rs10454287	A	T	5969.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=75;ExcessHet=3.0103;FS=3.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=-4.700e-01;SOR=1.140;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2372,225,0
chr5	6611983	rs3733776	C	A	2672.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.560e-01;DB;DP=33;ExcessHet=3.0103;FS=6.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=-1.208e+00;SOR=1.696;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1071,99,0
chr5	6617011	rs6887702	C	A	6593.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.490e-01;DB;DP=74;ExcessHet=3.0103;FS=6.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-1.369e+00;SOR=1.287;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2398,222,0
chr5	6618186	rs10475338	T	C	5357.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.125e+00;DB;DP=55;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.13;ReadPosRankSum=0.387;SOR=0.403;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1837,165,0
chr5	6618323	rs10475339	G	C	663.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.95;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.85;ReadPosRankSum=-4.620e-01;SOR=2.030;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr5	6620459	rs2288446	A	G	2157.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.209;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=-5.530e-01;SOR=0.848;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:763,72,0
chr5	6621860	rs36037471	C	CA	175.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=6.9897;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-3.190e-01;SOR=3.056;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:14:62,0,14
chr5	6737571	rs2279657	A	G	2788.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.929;DB;DP=26;ExcessHet=1.5490;FS=2.928;MQ=60.00;MQRankSum=0.00;QD=30.63;ReadPosRankSum=-5.600e-02;SOR=2.038;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,18:26:99:0|1:6737571_A_G:750,0,572:6737571
chr5	6737576	rs2279656	G	A	1744.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.532e+00;DB;DP=31;ExcessHet=3.9794;FS=3.288;MQ=60.00;MQRankSum=0.00;QD=21.53;ReadPosRankSum=0.021;SOR=0.315;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,21:31:99:0|1:6737571_A_G:816,0,605:6737571
chr5	6739039	rs573304	T	G	1565.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.04;ReadPosRankSum=-1.819e+00;SOR=3.258;VQSLOD=18.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:418,0,237
chr5	6739791	rs419128	G	A	2913.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.910e-01;DB;DP=115;ExcessHet=3.9794;FS=0.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=0.423;SOR=0.625;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,51:115:99:1213,0,1712
chr5	6744176	rs274672	G	A	441.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=-2.410e-01;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:97:97,0,213
chr5	6748518	rs274682	A	G	2439.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.086e+00;DB;DP=33;ExcessHet=3.9794;FS=7.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.15;ReadPosRankSum=0.667;SOR=0.096;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:471,0,580
chr5	6748659	rs274681	T	C	7666.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=135;ExcessHet=3.9794;FS=2.564;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=0.462;SOR=0.525;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,63:135:99:1638,0,1848
chr5	6751426	rs274679	A	C	1443.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.82;ReadPosRankSum=-6.460e-01;SOR=2.636;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:172,0,294
chr5	6754762	rs274676	T	C	4907.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.735e+00;DB;DP=84;ExcessHet=1.5490;FS=3.731;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=0.924;SOR=1.098;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,47:84:99:1398,0,1123
chr5	6827854	rs275441	C	T	2427.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.646e+00;DB;DP=63;ExcessHet=1.5490;FS=0.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=-8.680e-01;SOR=0.606;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2068,189,0
chr5	6828229	rs275440	G	A	263.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=4.174;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:278,21,0
chr5	7303877	rs6868691	G	A	1344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.800;DB;DP=110;ExcessHet=3.0103;FS=0.700;MQ=59.39;MQRankSum=1.14;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=0.398;SOR=0.770;VQSLOD=1.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,54:110:99:1353,0,1350
chr5	7303980	.	A	G	894.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DP=69;ExcessHet=3.0103;FS=2.021;MQ=51.80;MQRankSum=-2.950e-01;NEGATIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-3.840e-01;SOR=1.024;VQSLOD=-2.848e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,34:69:99:903,0,821
chr5	7306873	rs12516994	C	T	487.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=59.13;MQRankSum=1.05;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=1.59;SOR=0.693;VQSLOD=0.607;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,19:38:99:496,0,477
chr5	7396327	rs113406393	C	T	123.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.43;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,74
chr5	7396706	.	TGCCCCTCGGCCCGCGGCA	T	579.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.45;ReadPosRankSum=1.02;SOR=0.922;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:354,0,1067
chr5	7520881	rs13166360	G	T	2871.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.089e+00;DB;DP=238;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.732;SOR=0.698;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,117:238:99:2880,0,3096
chr5	7521083	rs3828628	G	A	600.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.755e+00;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=0.972;SOR=0.941;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:609,0,531
chr5	7521164	rs34338104	A	G	208.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.83;ReadPosRankSum=-2.040e-01;SOR=1.085;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:217,0,142
chr5	7690707	rs2973326	C	T	4127.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.56;SOR=2.400;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1615,146,0
chr5	7690754	rs2914289	C	T	3248.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=69;ExcessHet=3.9794;FS=4.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.67;ReadPosRankSum=0.105;SOR=1.105;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,27:69:99:728,0,1067
chr5	7691211	rs13172699	A	G	276.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=0.674;SOR=1.802;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,69
chr5	7695845	rs11134251	C	A	1252.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.920e-01;DB;DP=70;ExcessHet=3.9794;FS=4.919;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.03;ReadPosRankSum=1.10;SOR=1.092;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,25:70:99:550,0,1165
chr5	7696028	rs11134252	C	T	1414.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=61;ExcessHet=3.9794;FS=1.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=0.730;SOR=0.518;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,29:61:99:709,0,711
chr5	7698282	rs60394679	C	T	567.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.368e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=1.38;SOR=0.402;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:302,0,329
chr5	7698551	rs4257743	C	T	1127.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=34;ExcessHet=3.9794;FS=1.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.23;ReadPosRankSum=0.252;SOR=0.368;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:395,0,649
chr5	7707145	rs10475386	G	A	5204.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.360e+00;DB;DP=67;ExcessHet=3.0103;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.89;ReadPosRankSum=0.517;SOR=0.518;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2172,201,0
chr5	7707178	rs10475387	C	T	1881.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=48;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.64;ReadPosRankSum=0.361;SOR=0.720;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:664,0,650
chr5	7709181	rs10475389	A	G	413.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=5.136;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:102,9,0
chr5	7712810	rs6555488	C	T	1352.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.81;SOR=7.223;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:360,27,0
chr5	7717130	rs77056625	G	A	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.85;ReadPosRankSum=0.524;SOR=0.446;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,93
chr5	7717396	rs6878196	T	C	1346.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.22;DB;DP=55;ExcessHet=3.9794;FS=7.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.89;SOR=1.290;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,23:55:99:580,0,728
chr5	7724521	rs371811181	GT	G	384.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=20;ExcessHet=6.9897;FS=3.012;MQ=59.84;MQRankSum=0.00;QD=5.75;ReadPosRankSum=0.309;SOR=0.271;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,4:20:56:56,0,258
chr5	7727152	rs10067728	C	T	867.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.25;ReadPosRankSum=2.13;SOR=1.236;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:101,0,227
chr5	7743787	rs62342477	C	T	3660.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=42;ExcessHet=3.9794;FS=0.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=1.54;SOR=0.622;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,14:42:99:341,0,717
chr5	7757705	rs4072341	T	C	1791.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.534;DB;DP=30;ExcessHet=6.9897;FS=0.925;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-4.400e-01;SOR=0.566;VQSLOD=6.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,12:30:99:0|1:7757705_T_C:439,0,1028:7757705
chr5	7757715	rs4479814	C	T	1622.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=24;ExcessHet=6.9897;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.44;ReadPosRankSum=-1.820e-01;SOR=0.678;VQSLOD=6.35;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,11:24:99:0|1:7757705_T_C:416,0,936:7757705
chr5	7772855	rs11390037	A	AT	601.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=1.04;SOR=1.270;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:41:65,0,41
chr5	7784696	rs2306053	A	G	84.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.980e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.05;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:93:93,0,103
chr5	7802363	rs2290910	C	T	1211.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.201e+00;DB;DP=45;ExcessHet=3.9794;FS=0.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=1.06;SOR=0.516;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:560,0,619
chr5	7817258	rs57771304	GA	G	172.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=15;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;QD=11.48;ReadPosRankSum=0.281;SOR=2.030;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:181,0,152
chr5	7820586	rs326164	G	A	203.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=-4.310e-01;SOR=1.609;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:99:212,0,103
chr5	7826648	rs10556518	AAAC	A	2599.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.620e-01;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-4.610e-01;SOR=0.850;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,8:24:99:288,0,758
chr5	7826680	rs6887726	T	C	3056.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=45;ExcessHet=3.9794;FS=1.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=0.685;SOR=0.911;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,18:45:99:539,0,767
chr5	7835616	rs34574678	G	GA	1059.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DB;DP=55;ExcessHet=3.9794;FS=3.808;MQ=60.00;MQRankSum=0.00;QD=10.92;ReadPosRankSum=0.068;SOR=0.405;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,23:55:99:506,0,799
chr5	7835685	rs179044	G	T	2546.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.720e-01;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.37;ReadPosRankSum=1.09;SOR=0.699;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,34:35:73:1015,73,0
chr5	7850898	rs36226128	TGCCCAGCCGCCCAGCCGCCCAGCC	T,TGCCCAGCC	2449.18	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.39;SOR=2.584;VQSLOD=3.87;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,7,8:15:99:629,337,347,292,0,267
chr5	7851181	rs161874	C	A	216.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.64;ReadPosRankSum=0.692;SOR=0.323;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,2:13:49:49,0,314
chr5	7859523	rs1046012	A	G	842.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.032e+00;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-2.900e-01;SOR=0.628;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,37:68:99:851,0,827
chr5	7859702	rs16879236	T	G	1190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.038;SOR=0.739;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1199,0,1037
chr5	7861638	rs162027	C	T	676.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=-2.850e-01;SOR=0.334;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:212,15,0
chr5	7862926	rs3733784	T	C	817.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.413;DB;DP=13;ExcessHet=6.9897;FS=4.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-4.830e-01;SOR=1.646;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:176,0,141
chr5	7865891	rs16879258	C	A	442.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.02;ReadPosRankSum=0.00;SOR=0.990;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,13:17:96:451,0,96
chr5	7866821	rs16879259	T	C	939.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=68;ExcessHet=3.0103;FS=0.920;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.81;ReadPosRankSum=0.277;SOR=0.558;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,36:68:99:948,0,682
chr5	7866967	rs162030	G	C	4303.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.472e+00;DB;DP=72;ExcessHet=3.9794;FS=3.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.01;ReadPosRankSum=0.337;SOR=0.528;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,71:72:99:2040,175,0
chr5	7868030	rs2966952	T	C	3933.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.63;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-8.100e-02;SOR=0.668;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1707,147,0
chr5	7868269	rs3733781	A	G	182.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.113e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.277;SOR=0.859;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:191,0,176
chr5	7868313	.	GAAAAAAA	G	127	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.35;SOR=3.258;VQSLOD=4.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:4:11:122,11,0
chr5	7869455	rs34828626	TC	T	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.340e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.155;SOR=0.169;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:185,0,179
chr5	7869900	rs73737651	G	C	90.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-5.660e-01;SOR=0.368;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:7869884_G_A:99,0,203:7869884
chr5	7870083	rs326119	C	A	3406.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-02;DB;DP=57;ExcessHet=6.9897;FS=4.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-1.970e-01;SOR=0.940;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,34:57:99:986,0,583
chr5	7872118	rs3836787	AT	A	96.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.17;SOR=3.258;VQSLOD=4.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:113,12,0
chr5	7878179	rs1532268	C	T	998.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=114;ExcessHet=3.0103;FS=0.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=-2.280e-01;SOR=0.805;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,43:114:99:1007,0,1711
chr5	7878424	rs2303080	T	A	1043.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.121;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=-1.060e-01;SOR=0.725;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,45:87:99:1052,0,951
chr5	7883513	.	C	G	105.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.12;ReadPosRankSum=0.328;SOR=0.495;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:7883513_C_G:114,0,658:7883513
chr5	7883514	.	G	T	105.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=0.328;SOR=0.495;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,3:7:99:0|1:7883513_C_G:114,0,658:7883513
chr5	7883527	rs435836	G	A	149.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.66;ReadPosRankSum=-1.611e+00;SOR=1.179;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:7883513_C_G:158,0,583:7883513
chr5	7883553	.	C	T	66.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.27;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:7883513_C_G:75,0,590:7883513
chr5	7883554	.	A	G	66.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.27;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:7883513_C_G:75,0,590:7883513
chr5	7885675	rs199744326	G	GT	95.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.51;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:10:99:103,0,109
chr5	7885782	rs34487083	A	AT	2669.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.410e-01;DB;DP=68;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=0.024;SOR=0.648;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,65:68:99:1577,125,0
chr5	7886104	rs162037	T	C	567.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.429e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.58;ReadPosRankSum=1.30;SOR=1.071;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:344,27,0
chr5	7886131	rs162038	G	C	276.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=0.328;SOR=1.270;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr5	7889216	rs2287779	G	A	618.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.920e-01;DB;DP=54;ExcessHet=3.0103;FS=2.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=1.68;SOR=1.085;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:627,0,784
chr5	7889304	rs2287780	C	T	293.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.217;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-1.327e+00;SOR=0.551;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:302,0,536
chr5	7891426	.	A	T	116.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.15;ReadPosRankSum=-1.676e+00;SOR=1.179;VQSLOD=20.53;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,4:28:99:0|1:7891426_A_T:125,0,1063:7891426
chr5	7891428	.	G	T	80.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.951e+00;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.77;ReadPosRankSum=-8.240e-01;SOR=0.784;VQSLOD=20.61;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,3:29:89:0|1:7891426_A_T:89,0,1066:7891426
chr5	7891506	rs16879334	C	G	709.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-01;DB;DP=78;ExcessHet=3.0103;FS=1.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.09;ReadPosRankSum=1.43;SOR=0.922;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,29:78:99:718,0,1392
chr5	7891576	rs3214449	TAGACTC	T	1347.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.178;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=-1.513e+00;SOR=0.648;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,38:94:99:1356,0,2196
chr5	7891796	rs16879342	C	T	63.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.524;SOR=0.223;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:61:72,0,61
chr5	7892644	rs2277957	A	T	99.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.94;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:108,0,66
chr5	7893121	rs162049	G	A	2105.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=57;ExcessHet=6.9897;FS=0.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-4.000e-01;SOR=0.613;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:741,0,744
chr5	7895985	rs2303082	A	G	345.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.746e+00;DB;DP=26;ExcessHet=3.0103;FS=10.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=1.05;SOR=0.061;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,16:26:99:354,0,298
chr5	7897319	rs1802059	G	A	790.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.168;DB;DP=69;ExcessHet=3.0103;FS=3.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=0.169;SOR=1.136;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,32:69:99:799,0,910
chr5	8461166	rs341899	T	C	4221.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.05;SOR=2.341;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1432,128,0
chr5	9043142	rs3834271	T	TA	2409.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275e+00;DB;DP=37;ExcessHet=3.0103;FS=2.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=0.920;SOR=0.473;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1055,111,0
chr5	9050410	rs257098	C	T	3113.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=33;ExcessHet=3.0103;FS=3.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=-8.990e-01;SOR=1.167;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1225,99,0
chr5	9053945	rs257095	C	T	4912.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.550e-01;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=-2.500e-02;SOR=0.732;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2157,214,0
chr5	9066464	rs786847	A	G	8149.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.78;DB;DP=98;ExcessHet=3.0103;FS=3.549;MQ=59.89;MQRankSum=-1.347e+00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=0.556;SOR=0.424;VQSLOD=1.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3472,294,0
chr5	9066802	rs786846	G	A	7996.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=76;ExcessHet=3.0103;FS=0.551;MQ=59.99;MQRankSum=0.985;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=-5.680e-01;SOR=0.791;VQSLOD=2.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2359,227,0
chr5	9154659	rs1806151	G	C	2015.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.35;DB;DP=33;ExcessHet=3.9794;FS=0.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=0.189;SOR=0.867;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1038,99,0
chr5	9201973	rs40683	C	T	1765.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.684e+00;DB;DP=36;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=-1.830e-01;SOR=0.681;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1258,108,0
chr5	9202574	rs40682	A	G	870.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=-1.120e-01;SOR=2.226;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:434,36,0
chr5	9265602	rs7734564	C	T	7559.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=150;ExcessHet=3.9794;FS=1.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.57;ReadPosRankSum=-1.800e-02;SOR=0.579;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,67:150:99:1553,0,2090
chr5	9280841	rs55821543	G	A	283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.106e+00;DB;DP=59;ExcessHet=3.0103;FS=1.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.80;ReadPosRankSum=-1.281e+00;SOR=0.946;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,17:59:99:292,0,1078
chr5	9280957	rs6555597	C	A	5345.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.91;SOR=2.093;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1117,99,0
chr5	9548694	rs440527	G	A	560.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.465e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=-6.520e-01;SOR=2.303;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr5	9629529	rs2234233	G	A	649.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=63;ExcessHet=3.0103;FS=0.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-8.570e-01;SOR=0.819;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,24:63:99:658,0,1056
chr5	10227548	rs2136197	C	A	5807.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=56;ExcessHet=3.0103;FS=2.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.22;ReadPosRankSum=1.63;SOR=0.236;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1839,167,0
chr5	10227823	rs3080459	C	CCT	1419.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.728;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.36;ReadPosRankSum=-7.220e-01;SOR=1.329;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:578,39,0
chr5	10235490	rs2292264	G	A	1537.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.353e+00;DB;DP=32;ExcessHet=1.5490;FS=1.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=1.59;SOR=0.495;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:905,96,0
chr5	10236927	rs2292263	C	T	4820.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=1.355;VQSLOD=19.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1269,120,0
chr5	10237036	rs12653481	A	G	2306.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.420e-01;DB;DP=44;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=0.124;SOR=0.765;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1396,132,0
chr5	10239261	rs2438652	G	A	6512.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.79;DB;DP=100;ExcessHet=1.5490;FS=2.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.14;ReadPosRankSum=0.925;SOR=0.903;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,100:100:99:1|1:10239261_G_A:4340,306,0:10239261
chr5	10239278	rs2252505	C	T	5907.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.67;DB;DP=101;ExcessHet=1.5490;FS=1.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=1.28;SOR=0.849;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,101:101:99:1|1:10239261_G_A:4386,304,0:10239261
chr5	10239737	rs2607320	C	G	216.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=-9.670e-01;SOR=1.402;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr5	10250047	rs2607301	C	A	223.20	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=6;ExcessHet=3.9794;FS=1.852;MQ=60.00;MQRankSum=0.00;QD=6.56;ReadPosRankSum=-4.470e-01;SOR=0.289;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:200,18,0
chr5	10250430	rs2548546	G	A	7708.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.330;DB;DP=154;ExcessHet=3.9794;FS=2.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.09;ReadPosRankSum=1.48;SOR=0.736;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4625,461,0
chr5	10250443	rs2578618	T	C	7284.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.33;DB;DP=137;ExcessHet=3.9794;FS=3.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.74;SOR=0.881;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4327,411,0
chr5	10254117	rs2259642	C	T	379.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=0.703;SOR=0.616;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr5	10254504	.	CTT	C,CT	594.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.294;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=-5.790e-01;SOR=0.581;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,13:18:42:375,256,294,71,0,42
chr5	10254817	rs2578617	A	G	5358.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=91;ExcessHet=3.9794;FS=0.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=0.332;SOR=0.629;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3000,273,0
chr5	10255021	rs2607294	T	C	2530.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=1.47;SOR=0.654;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1427,138,0
chr5	10255083	rs2578616	A	C	2034.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.71;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=-3.250e-01;SOR=0.821;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:87:1|1:10255083_A_C:1258,87,0:10255083
chr5	10255096	rs3070506	C	CCT	1793.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-9.260e-01;SOR=0.754;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,24:24:72:1|1:10255083_A_C:1080,72,0:10255083
chr5	10256161	rs1042392	T	C	6023.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.990e-01;DB;DP=93;ExcessHet=3.9794;FS=7.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.20;ReadPosRankSum=1.11;SOR=1.057;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2807,279,0
chr5	10256365	rs2578614	C	T	654.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.50;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=1.25;SOR=1.044;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr5	10258125	rs2457156	G	A	8298.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.09;DB;DP=153;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=1.32;SOR=0.692;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4474,456,0
chr5	10261250	rs2607314	C	G	2070.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.113e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=0.441;SOR=0.844;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:620,48,0
chr5	10261542	rs2607327	C	T	12052.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=3.583;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3438,285,0
chr5	10261966	rs2244717	G	A	2786.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.04;DB;DP=56;ExcessHet=3.9794;FS=5.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=0.672;SOR=1.093;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1703,168,0
chr5	10262158	rs2244722	A	G	74	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=2.303;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr5	10262740	rs2578642	C	A	6839.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.910e-01;DB;DP=131;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.546;SOR=0.705;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:3665,389,0
chr5	10263453	rs147103051	GA	G	14587.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=59.95;QD=31.94;SOR=1.300;VQSLOD=4.41;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,98:98:99:1|1:10263453_GA_G:4441,298,0:10263453
chr5	10263457	rs58620077	G	A	9228.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.642;DB;DP=98;ExcessHet=3.9794;FS=8.635;MQ=59.95;MQRankSum=1.30;NEGATIVE_TRAIN_SITE;QD=28.57;ReadPosRankSum=1.75;SOR=1.141;VQSLOD=-1.537e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,98:98:99:1|1:10263453_GA_G:4479,301,0:10263453
chr5	10263617	rs2244960	G	A	2608.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.930e-01;DB;DP=37;ExcessHet=3.9794;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.798;SOR=0.460;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1178,111,0
chr5	10263725	rs2244964	G	A	361.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=1.20;SOR=1.244;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr5	10264962	rs544	A	G	2801.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=38;ExcessHet=3.9794;FS=0.822;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.701;SOR=0.607;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1169,114,0
chr5	10265076	rs699113	C	T	567.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.930e-01;DB;DP=5;ExcessHet=3.9794;FS=5.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=0.100;SOR=3.202;VQSLOD=17.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr5	10282396	rs10067744	A	G	3349.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.230e-01;DB;DP=62;ExcessHet=3.9794;FS=3.471;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.692;SOR=0.464;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1850,186,0
chr5	10282479	rs10052785	C	T	1795.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.352e+00;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=1.71;SOR=0.738;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:942,78,0
chr5	10286742	rs13180748	C	T	2501.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=1.905;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:688,63,0
chr5	10379192	rs11378911	T	TA	669.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=6.184;VQSLOD=6.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr5	10379226	rs62364285	G	C	73.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:27:81,0,27
chr5	10391548	.	GTT	G	234.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e-01;DP=28;ExcessHet=6.9897;FS=0.000;MQ=59.65;MQRankSum=1.60;QD=3.21;ReadPosRankSum=-3.480e-01;SOR=0.740;VQSLOD=0.165;culprit=QD	GT:AD:DP:GQ:PL	0/1:13,7:28:99:172,0,347
chr5	10417589	rs2967956	G	T	2566.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.210e-01;DB;DP=30;ExcessHet=3.0103;FS=1.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=-9.110e-01;SOR=1.085;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1027,90,0
chr5	10423731	rs35814421	A	G	436.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=0.674;SOR=0.859;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:22:166,0,22
chr5	10424068	.	C	CT	30.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-02;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.03;ReadPosRankSum=-1.560e-01;SOR=0.941;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	0/1:7,3:12:39:39,0,142
chr5	10442068	rs1047426	C	T	3246.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.080e-01;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.54;ReadPosRankSum=-2.540e-01;SOR=3.564;VQSLOD=19.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1134,84,0
chr5	10442496	rs2567577	T	C	8290.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.76;DB;DP=83;ExcessHet=3.0103;FS=4.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=0.400;SOR=1.991;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:3462,249,0
chr5	10448247	rs1976360	G	A	860.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.09;DB;DP=18;ExcessHet=3.9794;FS=2.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.480;SOR=1.179;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:549,54,0
chr5	10478341	rs2589653	C	T	2084.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.525e+00;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.12;ReadPosRankSum=0.151;SOR=1.416;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1060,78,0
chr5	10505851	rs373652829	TAAA	T	251.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.204;DB;DP=10;ExcessHet=6.9897;FS=7.014;MQ=59.56;MQRankSum=0.00;QD=7.63;ReadPosRankSum=-6.510e-01;SOR=0.059;VQSLOD=4.07;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,4:10:99:150,0,224
chr5	10506509	rs2915513	G	A	342.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.860e-01;DB;DP=24;ExcessHet=3.0103;FS=1.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=1.42;SOR=1.508;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:351,0,337
chr5	10506739	rs2936580	C	T	380.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.703;DB;DP=26;ExcessHet=3.0103;FS=1.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.515;SOR=1.329;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:389,0,289
chr5	10564846	rs814576	C	T	6848.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.94;SOR=2.093;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2327,189,0
chr5	10565027	rs1103749	C	G	795.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.59;SOR=2.737;VQSLOD=19.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:396,33,0
chr5	10618645	rs181252815	C	T	1605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.905;DB;DP=151;ExcessHet=3.0103;FS=4.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=1.12;SOR=0.407;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,69:151:99:1614,0,1872
chr5	10618681	rs13169304	C	A	3693.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.879e+00;DB;DP=95;ExcessHet=6.9897;FS=1.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.65;ReadPosRankSum=0.544;SOR=0.595;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,51:95:99:1252,0,1133
chr5	10624887	rs1531839	T	C	1532.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=65;ExcessHet=3.9794;FS=4.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=0.324;SOR=1.177;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,25:65:99:659,0,1015
chr5	10638180	rs11745612	T	C	3720.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=107;ExcessHet=1.5490;FS=7.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=0.631;SOR=1.209;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,47:107:99:1167,0,1511
chr5	10638364	rs6889196	A	G	3450.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=100;ExcessHet=1.5490;FS=14.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-1.450e+00;SOR=1.687;VQSLOD=13.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,37:100:99:973,0,1606
chr5	10649125	rs7737244	T	C	81.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=-3.190e-01;SOR=0.916;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:89,0,31
chr5	10649784	rs113222960	G	A	261.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=8;ExcessHet=3.9794;FS=2.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.06;ReadPosRankSum=0.703;SOR=0.223;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:67:144,0,67
chr5	10650006	.	G	A	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=22;ExcessHet=3.0103;FS=5.076;MQ=60.00;MQRankSum=0.00;QD=15.10;ReadPosRankSum=0.460;SOR=2.551;VQSLOD=18.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:341,0,305
chr5	10650150	rs56969869	A	G	1043.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.760;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.216;SOR=0.739;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,27:60:99:642,0,889
chr5	10650251	rs140897444	CGGGGCT	C	1013.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.788;DB;DP=29;ExcessHet=3.9794;FS=1.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=1.26;SOR=0.936;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,18:29:99:675,0,437
chr5	10650324	rs13354827	T	G	358.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=8;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.85;ReadPosRankSum=1.53;SOR=2.303;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,7:8:54:0|1:10650324_T_G:291,0,54:10650324
chr5	10650325	rs13354828	T	G	358.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=8;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.85;ReadPosRankSum=1.53;SOR=2.303;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,7:8:54:0|1:10650324_T_G:291,0,54:10650324
chr5	10664999	rs111384023	C	G	190.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.250e-01;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.05;ReadPosRankSum=-2.060e-01;SOR=0.859;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:199,0,546
chr5	10665208	rs373652680	C	T	390.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.073;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.13;ReadPosRankSum=0.755;SOR=0.673;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,17:48:99:399,0,811
chr5	10665259	rs11954194	C	T	251.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.764;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=2.03;SOR=0.346;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:260,0,430
chr5	10748034	rs10709249	GC	G	606.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=4.407;VQSLOD=4.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
chr5	10748231	rs267944	C	T	7021.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.015;DB;DP=82;ExcessHet=3.0103;FS=1.890;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.88;ReadPosRankSum=-1.186e+00;SOR=0.890;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2697,246,0
chr5	10748462	rs267943	C	T	3328.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.125e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=-8.120e-01;SOR=0.617;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1585,132,0
chr5	10760950	rs267928	C	G	736.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.19;SOR=6.091;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
chr5	10761182	rs267927	A	G	4863.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=0.758;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1437,135,0
chr5	10973891	rs112846822	C	T	395.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=24;ExcessHet=3.0103;FS=1.718;MQ=60.00;MQRankSum=0.00;QD=16.47;ReadPosRankSum=2.02;SOR=1.244;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:404,0,200
chr5	10973927	rs1566624	T	C	1085.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.706;DB;DP=19;ExcessHet=3.9794;FS=2.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-7.370e-01;SOR=1.011;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,15:19:72:452,0,72
chr5	10981698	.	A	AAC	151.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.05;ReadPosRankSum=0.613;SOR=0.323;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,5:15:99:0|1:10981698_A_AAC:124,0,646:10981698
chr5	10981720	rs58618024	G	C	481.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.782e+00;DB;DP=17;ExcessHet=3.9794;FS=1.901;MQ=60.00;MQRankSum=0.00;QD=15.04;ReadPosRankSum=0.753;SOR=0.316;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,8:17:99:0|1:10981698_A_AAC:277,0,335:10981698
chr5	10986524	rs17772716	A	G	451.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.86;DB;DP=6;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=-1.036e+00;SOR=2.049;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:116,0,100
chr5	10986581	rs17772741	A	C	687.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.683;DB;DP=19;ExcessHet=3.9794;FS=3.405;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.98;ReadPosRankSum=0.551;SOR=1.414;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:268,0,257
chr5	10986684	rs12515637	G	C	1438.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.331e+00;DB;DP=61;ExcessHet=3.9794;FS=7.926;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=1.80;SOR=0.305;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,28:61:99:631,0,847
chr5	10986722	rs36031475	A	AG	3261.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.070e-01;DB;DP=77;ExcessHet=3.9794;FS=4.483;MQ=60.00;MQRankSum=0.00;QD=18.85;ReadPosRankSum=-5.100e-02;SOR=0.421;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,38:77:99:0|1:10986722_A_AG:1472,0,1844:10986722
chr5	10986727	rs35210570	A	G	3279.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.567;DB;DP=80;ExcessHet=3.9794;FS=4.374;MQ=60.00;MQRankSum=0.00;QD=18.42;ReadPosRankSum=-1.110e-01;SOR=0.440;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:41,39:80:99:0|1:10986722_A_AG:1490,0,1862:10986722
chr5	10986772	rs9312749	G	A	2149.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=84;ExcessHet=3.9794;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.182;SOR=0.753;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,39:84:99:1020,0,1043
chr5	10986947	rs10434650	C	T	756.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.009e+00;DB;DP=20;ExcessHet=3.9794;FS=8.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=-1.890e-01;SOR=0.121;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,16:20:99:507,0,116
chr5	10988172	rs879353	T	C	1739.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.97;DB;DP=53;ExcessHet=3.9794;FS=9.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=1.08;SOR=1.516;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,21:53:99:591,0,810
chr5	10992983	rs4701903	G	C	360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.29;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=-9.080e-01;SOR=1.148;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:145,0,262
chr5	11082762	rs2277053	T	C	11272.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.386e+00;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=-6.680e-01;SOR=0.733;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5371,522,0
chr5	11084189	rs1024621	T	C	6654.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.69;DB;DP=74;ExcessHet=3.0103;FS=2.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=0.256;SOR=0.941;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2392,222,0
chr5	11365166	rs2074260	C	T	574.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=0.114;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:92:141,0,92
chr5	11412302	rs31750	C	T	5680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=1.727;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1595,147,0
chr5	11564995	rs7719578	A	G	6552.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=108;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.62;SOR=1.480;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3336,323,0
chr5	11565505	rs2561631	A	G	705.87	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=5.784;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr5	13692279	rs2166337	A	T	3501.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.750e-01;DB;DP=39;ExcessHet=3.0103;FS=7.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.53;ReadPosRankSum=0.914;SOR=0.548;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1324,117,0
chr5	13701167	rs6883283	A	C	1441.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.67;SOR=4.235;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:247,18,0
chr5	13701327	rs3734112	A	G	1416.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.10;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.52;ReadPosRankSum=1.28;SOR=0.716;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:638,54,0
chr5	13701525	rs3734111	T	C	4243.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.379e+00;DB;DP=43;ExcessHet=3.0103;FS=8.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.31;ReadPosRankSum=0.650;SOR=0.146;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,43:43:99:1|1:13701525_T_C:1810,129,0:13701525
chr5	13701536	rs3734110	T	C	4063.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.079e+00;DB;DP=38;ExcessHet=3.0103;FS=4.941;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.34;ReadPosRankSum=0.968;SOR=0.200;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,38:38:99:1|1:13701525_T_C:1686,114,0:13701525
chr5	13701617	rs61338089	GA	G	516.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.80;ReadPosRankSum=0.00;SOR=1.697;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:9:27:215,27,0
chr5	13701654	rs13162313	T	C	385.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=3.258;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:220,18,0
chr5	13701699	rs13180448	G	A	149.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=3.258;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	13721378	rs17203442	A	G	1851.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.63;DB;DP=19;ExcessHet=0.4576;FS=4.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.07;ReadPosRankSum=-2.350e-01;SOR=2.876;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:652,57,0
chr5	13729714	rs3777093	A	G	3152.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.280e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.15;ReadPosRankSum=-4.940e-01;SOR=0.718;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1104,99,0
chr5	13735147	rs6554808	C	A	581.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.280e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=0.00;SOR=2.419;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr5	13735892	rs3734109	T	C	4089.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.809;DB;DP=43;ExcessHet=3.0103;FS=0.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=1.53;SOR=0.599;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1348,129,0
chr5	13737444	rs17263496	G	A	6349.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=0.890;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2642,257,0
chr5	13737700	rs2401811	A	G	1539.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.550e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.19;ReadPosRankSum=0.082;SOR=1.498;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:519,39,0
chr5	13754394	rs2401809	C	T	3215.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=87;ExcessHet=6.9897;FS=1.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.34;ReadPosRankSum=1.23;SOR=0.651;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,40:87:99:1030,0,1102
chr5	13769257	rs12655133	T	A	3355.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=72;ExcessHet=1.5490;FS=3.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-1.990e-01;SOR=1.049;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2245,216,0
chr5	13769356	.	GTT	G	257.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.53;ReadPosRankSum=0.366;SOR=0.495;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:7:37:88,0,37
chr5	13770757	rs138234449	C	CA	3013.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=1.994;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,27:27:81:878,81,0
chr5	13771249	rs1995390	A	G	177.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=3.611;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr5	13776487	rs34413787	C	T	3191.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=79;ExcessHet=1.5490;FS=0.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=1.65;SOR=0.775;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,78:79:99:2422,208,0
chr5	13788886	rs10513155	C	A	5051.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.554e+00;DB;DP=91;ExcessHet=3.9794;FS=1.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=-1.540e-01;SOR=0.572;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,90:91:99:2800,231,0
chr5	13810149	rs35732567	G	A	1251.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.461e+00;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=-8.900e-02;SOR=0.965;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:273,0,380
chr5	13810441	rs35058767	G	A	3994.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=69;ExcessHet=3.9794;FS=4.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=1.54;SOR=1.064;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,40:69:99:1062,0,717
chr5	13810451	rs145443373	CAT	C	3318.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.010e-01;DB;DP=48;ExcessHet=6.9897;FS=1.362;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.887;SOR=0.862;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,30:48:99:1199,0,633
chr5	13810529	rs31238	C	G	1321.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.902e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.74;ReadPosRankSum=0.613;SOR=1.009;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:489,39,0
chr5	13817881	rs6889720	G	A	1228.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=18;ExcessHet=6.9897;FS=2.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=0.237;SOR=1.279;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:207,0,343
chr5	13817984	rs795540	T	C	69.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:77,0,34
chr5	13823262	rs10035657	T	C	1469.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=36;ExcessHet=6.9897;FS=1.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-1.702e+00;SOR=0.511;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:575,0,377
chr5	13823588	rs6864007	T	A	565.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.72;ReadPosRankSum=0.00;SOR=1.931;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:144,0,100
chr5	13829608	rs1348691	G	A	942.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030e-01;DB;DP=16;ExcessHet=6.9897;FS=2.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.28;ReadPosRankSum=-3.170e-01;SOR=1.389;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:201,0,347
chr5	13829799	rs1348689	G	A	2335.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DB;DP=69;ExcessHet=6.9897;FS=0.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=0.078;SOR=0.642;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,38:69:99:890,0,756
chr5	13829933	rs16902790	G	A	965.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.881;DB;DP=21;ExcessHet=6.9897;FS=2.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.507;SOR=0.357;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:362,0,262
chr5	13830007	rs201625945	TTTTCAAAAGGAGGTAAAGTTACAATCCCAA	T	681.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.43;ReadPosRankSum=0.241;SOR=0.804;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:189,0,279
chr5	13830048	rs10474996	G	A	675.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=10;ExcessHet=6.9897;FS=1.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.33;ReadPosRankSum=-1.282e+00;SOR=0.420;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:218,0,142
chr5	13839695	rs9312849	C	T	508.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.64;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.27;ReadPosRankSum=-2.830e-01;SOR=2.303;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr5	13842027	rs35805633	CA	C	758.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=7;ExcessHet=3.9794;FS=4.786;MQ=59.87;MQRankSum=0.00;QD=18.49;ReadPosRankSum=1.34;SOR=2.215;VQSLOD=4.94;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,5:7:93:0|1:13842027_CA_C:204,0,93:13842027
chr5	13842052	rs1910089	A	T	738.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.780e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.78;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.02;ReadPosRankSum=0.566;SOR=0.859;VQSLOD=5.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:13842027_CA_C:201,0,134:13842027
chr5	13845045	rs10041113	G	A	1443.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.987;DB;DP=35;ExcessHet=6.9897;FS=0.648;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=0.949;SOR=0.657;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,16:35:99:393,0,423
chr5	13845107	rs4429853	A	G	1424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-3.600e-01;SOR=0.686;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:405,0,242
chr5	13845151	rs10041099	C	G	1010.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=18;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.176;SOR=0.602;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:315,0,210
chr5	13850739	rs4701988	T	A	1083.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=2.115;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1100,105,0
chr5	13859807	rs1867677	G	T	1588.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.97;SOR=6.043;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:361,27,0
chr5	13862920	rs115114167	C	T	114.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.516;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=0.322;SOR=0.631;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:123,0,240
chr5	13871314	rs1445809	C	T	1161.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.96;SOR=6.869;VQSLOD=24.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:317,24,0
chr5	13876605	rs1445805	T	C	2404.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.61;SOR=3.223;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:552,48,0
chr5	13876664	rs1445804	T	C	4491.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.79;SOR=1.846;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1197,108,0
chr5	13882958	rs13170062	C	T	6585.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=202;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.60;SOR=1.284;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,202:202:99:6602,606,0
chr5	13883262	rs10462710	C	G	4084.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=3.362;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1691,135,0
chr5	13884960	rs10866504	A	T	137.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.44;SOR=1.609;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:152,12,0
chr5	13885023	rs141478148	GCA	G	1203.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.946;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.52;ReadPosRankSum=-6.800e-01;SOR=0.307;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:43:513,43,0
chr5	13886244	rs201639682	CA	C,CAA	2004.11	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.177;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.73;MQRankSum=-5.280e-01;QD=17.58;ReadPosRankSum=0.047;SOR=0.599;VQSLOD=0.662;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:8,12,10:30:66:217,66,253,100,0,284
chr5	13900345	rs1445823	A	G	2511.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=51;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=0.037;SOR=0.773;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1577,153,0
chr5	13902220	rs1530498	T	C	1748.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.600e-02;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.78;ReadPosRankSum=-1.418e+00;SOR=0.749;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,54:55:99:1765,125,0
chr5	13911700	rs34152978	GAA	G	108.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.45;SOR=2.833;VQSLOD=6.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	13913885	rs3213936	A	G	1026.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.00;SOR=0.914;VQSLOD=19.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1043,113,0
chr5	13914120	rs10513162	T	C	502.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=3.611;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:519,36,0
chr5	13914193	rs12652241	T	A	148.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=3.258;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr5	13914556	rs13179761	A	G	602.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=3.258;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:619,48,0
chr5	13914775	rs13180591	G	T	1479.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=1.514;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1496,141,0
chr5	13914796	rs13162553	T	C	1003.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.35;SOR=1.911;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1020,96,0
chr5	13914819	rs13180613	G	A	759.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=2.400;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:776,69,0
chr5	13914985	rs13180671	C	G	61.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.87;SOR=2.303;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr5	13916302	rs11750882	C	A	499.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.09;SOR=3.912;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:516,42,0
chr5	13919083	rs6893848	C	T	253.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.000e-02;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-7.000e-01;SOR=1.329;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:14:133,14,0
chr5	13919578	rs12655818	G	A	268.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.14;SOR=4.174;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr5	13920898	rs6885732	T	C	589.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=2.419;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:606,57,0
chr5	13922666	rs12659785	T	C	194.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.05;SOR=1.981;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr5	13927945	rs10513163	T	C	212.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.60;ReadPosRankSum=1.65;SOR=1.863;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr5	13928085	rs12659700	T	C	2007.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=1.812;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:932,90,0
chr5	13931205	rs1530497	G	C	2866.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.845e+00;DB;DP=52;ExcessHet=3.9794;FS=5.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=1.96;SOR=0.396;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,22:52:99:426,0,773
chr5	13931340	rs1530496	C	T	2222.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.043e+00;DB;DP=40;ExcessHet=3.9794;FS=1.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=1.18;SOR=0.909;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:450,0,509
chr5	13944512	rs339445	A	C	7092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=0.959;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2007,204,0
chr5	14183866	rs354302	T	C	1665.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.120e-01;DB;DP=13;ExcessHet=3.0103;FS=3.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=0.417;SOR=0.341;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:425,39,0
chr5	14183979	rs35336099	CAG	C	7243.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=53;ExcessHet=3.0103;FS=2.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.91;ReadPosRankSum=0.672;SOR=0.912;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:2376,160,0
chr5	14184022	rs354301	G	A	7119.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;DB;DP=71;ExcessHet=3.0103;FS=4.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=-7.940e-01;SOR=0.843;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2310,213,0
chr5	14184079	rs354300	G	A	7469.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.346e+00;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.49;ReadPosRankSum=-3.000e-03;SOR=0.671;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2834,276,0
chr5	14184211	rs354299	T	C	3255.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.05;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.56;ReadPosRankSum=-1.219e+00;SOR=0.627;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1016,75,0
chr5	14184254	rs354298	A	G	2095.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.92;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.82;ReadPosRankSum=-3.330e-01;SOR=1.358;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:578,48,0
chr5	14290805	rs30629	G	A	4312.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=93;ExcessHet=1.5490;FS=2.272;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=2.05;SOR=0.504;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2938,277,0
chr5	14358656	rs33977552	GT	G	1399.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.14;SOR=4.565;VQSLOD=6.52;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:33:379,33,0
chr5	14366840	rs30784	T	C	6380.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.590e+00;DB;DP=56;ExcessHet=3.0103;FS=0.946;MQ=59.98;MQRankSum=-6.920e-01;POSITIVE_TRAIN_SITE;QD=29.14;ReadPosRankSum=6.000e-03;SOR=0.531;VQSLOD=2.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1937,168,0
chr5	14377962	rs30769	A	C	1460.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.57;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.20;ReadPosRankSum=0.141;SOR=1.697;VQSLOD=6.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:536,45,0
chr5	14378068	rs30770	T	G	5000.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.33;DB;DP=58;ExcessHet=3.0103;FS=2.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.51;ReadPosRankSum=-1.225e+00;SOR=0.478;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1779,173,0
chr5	14381033	rs6877000	T	A	1369.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.69;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=1.49;SOR=0.804;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:276,27,0
chr5	14381119	rs10064105	A	G	682.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=-7.800e-01;SOR=0.824;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:691,0,350
chr5	14388797	.	GT	G	255.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.300e-02;DP=20;ExcessHet=6.9897;FS=2.527;MQ=59.94;MQRankSum=0.00;QD=4.06;ReadPosRankSum=-3.690e-01;SOR=0.332;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,6:20:66:66,0,239
chr5	14420027	rs30612	A	C	9576.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.86;DB;DP=149;ExcessHet=3.9794;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.33;ReadPosRankSum=0.257;SOR=0.778;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:5127,447,0
chr5	14471222	rs113933778	T	TTTCTC	1156.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.16;SOR=6.593;VQSLOD=4.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr5	14471666	rs27091	T	A	1794.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.348;DB;DP=33;ExcessHet=3.9794;FS=2.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=1.29;SOR=1.082;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1131,99,0
chr5	14472626	rs26186	T	C	7799.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.34;SOR=3.547;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:2093,165,0
chr5	14474283	rs11749307	G	A	634.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.344e+00;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.13;ReadPosRankSum=-9.430e-01;SOR=0.795;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:643,0,803
chr5	14479938	rs26173	G	A	5214.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.145e+00;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=-8.820e-01;SOR=0.793;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2313,228,0
chr5	14502957	rs113876403	G	A	528.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.210e-01;DB;DP=64;ExcessHet=3.0103;FS=1.325;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=-6.430e-01;SOR=0.368;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,22:64:99:537,0,1307
chr5	14507518	rs111969821	A	ATC	67.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.62;SOR=2.303;VQSLOD=3.79;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr5	14610184	rs25960	C	G	2492.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.929e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=-1.093e+00;SOR=0.557;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:274,0,305
chr5	14664821	rs250435	G	A	488.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=6;ExcessHet=3.9794;FS=1.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=-1.174e+00;SOR=1.329;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:73:73,0,75
chr5	14665179	rs113435226	T	TC	200.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.36;SOR=2.303;VQSLOD=5.46;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr5	14678996	rs31930	G	A	2948.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=36;ExcessHet=3.0103;FS=1.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=0.414;SOR=1.160;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:450,0,625
chr5	14690667	rs78486128	G	A	277.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.524;SOR=0.976;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:34:107,0,34
chr5	14692788	rs33978265	C	CT	726.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.97;ReadPosRankSum=-4.600e-02;SOR=1.697;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,5:16:75:75,0,209
chr5	14749226	rs72732802	C	A	175.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=-1.350e-01;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:95:184,0,95
chr5	14750823	rs31934	T	C	379.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.51;ReadPosRankSum=1.15;SOR=3.442;VQSLOD=18.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:79,6,0
chr5	14751399	rs697570	C	T	6049.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e-01;DB;DP=58;ExcessHet=3.0103;FS=4.083;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.23;ReadPosRankSum=0.566;SOR=1.061;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1885,174,0
chr5	14769103	rs17251667	G	A	1546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=1.26;SOR=0.699;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,63:142:99:1555,0,1942
chr5	14796562	rs56898794	TA	T	341.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.34;ReadPosRankSum=0.00;SOR=3.258;VQSLOD=4.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:39:69,0,39
chr5	14825750	rs1117282	T	C	1122.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.15;SOR=5.283;VQSLOD=21.36;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr5	15927905	rs70938037	A	AAGAC	819.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=16;ExcessHet=3.9794;FS=1.905;MQ=59.71;MQRankSum=0.00;QD=14.63;ReadPosRankSum=-4.980e-01;SOR=1.193;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,4:16:99:0|1:15927905_A_AAGAC:195,0,1038:15927905
chr5	15927927	rs66504704	A	G	1083.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=59.81;MQRankSum=0.00;QD=12.45;ReadPosRankSum=0.103;SOR=0.614;VQSLOD=4.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,11:31:99:0|1:15927905_A_AAGAC:308,0,1280:15927905
chr5	16091242	rs11389357	G	GA	1104.29	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.584;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=1.34;SOR=3.209;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:285,30,0
chr5	16177716	rs342548	T	C	539.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.47;ReadPosRankSum=0.936;SOR=1.426;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:111,0,168
chr5	16177807	rs2582666	A	G	2315.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.430e-01;DB;DP=58;ExcessHet=6.9897;FS=0.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=-1.280e+00;SOR=0.611;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,23:58:99:587,0,1001
chr5	16179125	rs342550	C	T	1316.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920e-01;DB;DP=24;ExcessHet=6.9897;FS=2.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=-1.160e-01;SOR=1.080;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,13:24:99:0|1:16179125_C_T:378,0,330:16179125
chr5	16474778	rs11428210	C	CT	563.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.190e-01;DB;DP=31;ExcessHet=3.9794;FS=3.058;MQ=59.94;MQRankSum=0.00;QD=9.88;ReadPosRankSum=-3.340e-01;SOR=0.405;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,15:31:99:260,0,190
chr5	16477751	rs162850	C	A	4387.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.402e+00;DB;DP=61;ExcessHet=3.9794;FS=1.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.33;ReadPosRankSum=-3.900e-01;SOR=0.813;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1903,183,0
chr5	16478120	rs162849	A	G	1156.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=43;ExcessHet=3.9794;FS=2.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.33;ReadPosRankSum=-7.440e-01;SOR=0.684;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:375,0,588
chr5	16478200	rs162848	G	A	2299.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.220e-01;DB;DP=45;ExcessHet=3.9794;FS=3.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.922;SOR=0.420;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1340,135,0
chr5	16479220	rs33692	A	G	169.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=-1.834e+00;SOR=0.892;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr5	16481062	rs2305279	C	T	1116.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.584;DB;DP=119;ExcessHet=3.0103;FS=0.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.38;ReadPosRankSum=-4.610e-01;SOR=0.609;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,48:119:99:1125,0,1791
chr5	16508674	rs332811	A	G	3123.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.47;ReadPosRankSum=0.312;SOR=0.958;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:898,75,0
chr5	16508829	rs11358957	AG	A	579.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.228;DB;DP=50;ExcessHet=3.0103;FS=1.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.386;SOR=0.515;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,20:50:99:588,0,953
chr5	16508898	rs33684	T	C	2635.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.780e+00;DB;DP=34;ExcessHet=3.0103;FS=1.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=-1.035e+00;SOR=0.559;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1011,102,0
chr5	16572322	.	CT	C	595	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=0.599;SOR=0.956;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:15:71:113,0,71
chr5	16617099	rs35003	A	G	857.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.64;ReadPosRankSum=0.732;SOR=0.412;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:521,39,0
chr5	16667003	rs26743	C	T	8049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.72;SOR=2.781;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1968,171,0
chr5	16667065	rs33273	C	G	2167.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=0.100;SOR=1.581;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:321,0,419
chr5	16668167	rs26744	G	A	786.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.72;SOR=5.994;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr5	16670618	rs27431	C	T	1403.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.675;SOR=1.073;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:83:83,0,331
chr5	16673664	rs27880	T	C	124.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.85;ReadPosRankSum=0.524;SOR=1.981;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:133,0,26
chr5	16673685	rs26745	C	T	135.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.32;ReadPosRankSum=1.72;SOR=0.941;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:95:144,0,95
chr5	16673975	rs25901	C	G	3373.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=140;ExcessHet=3.9794;FS=5.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.356;SOR=0.699;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,67:140:99:1593,0,1843
chr5	16676103	rs28057	T	C	1413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.187e+00;DB;DP=92;ExcessHet=3.0103;FS=7.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-4.370e-01;SOR=0.255;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,58:92:99:1422,0,914
chr5	16679914	rs10060411	G	A	396.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-1.150e-01;SOR=1.284;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:405,0,431
chr5	16679926	rs3217321	G	GC	456.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.796;DB;DP=35;ExcessHet=3.0103;FS=3.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=0.547;SOR=1.402;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,16:35:99:465,0,573
chr5	16679966	rs35580	C	T	1661.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=60;ExcessHet=3.9794;FS=0.644;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=-4.880e-01;SOR=0.583;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,30:60:99:687,0,824
chr5	16681288	rs56212177	G	GAT	189.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.66;ReadPosRankSum=-4.390e-01;SOR=1.179;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:99:198,0,109
chr5	16681305	rs26758	A	G	220.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=-1.465e+00;SOR=1.085;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:229,0,142
chr5	16681966	rs399833	G	A	1220.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.528e+00;DB;DP=84;ExcessHet=3.0103;FS=1.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.53;ReadPosRankSum=0.803;SOR=0.463;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,49:84:99:1229,0,888
chr5	16684109	rs2303703	T	C	551.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=29;ExcessHet=3.0103;FS=3.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=0.382;SOR=1.508;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,18:29:99:560,0,239
chr5	16694349	rs25911	T	C	319.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=0.272;SOR=1.329;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:146,0,66
chr5	16699512	rs256930	G	A	283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.88;ReadPosRankSum=0.401;SOR=0.346;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:292,0,180
chr5	16704585	rs185483934	C	A	508.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-2.690e-01;SOR=0.468;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:517,0,763
chr5	16704806	rs3860136	G	A	2446.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=179;ExcessHet=3.0103;FS=1.861;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=2.66;SOR=0.876;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,98:179:99:2455,0,1944
chr5	16711365	rs3214558	CA	C	1873.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=46;ExcessHet=3.9794;FS=14.649;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=0.073;SOR=2.004;VQSLOD=0.875;culprit=FS	GT:AD:DP:GQ:PL	0/1:22,24:46:99:546,0,490
chr5	16711451	rs27552	G	T	1701.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=36;ExcessHet=3.9794;FS=1.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=-7.800e-02;SOR=0.916;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:454,0,481
chr5	16758569	rs250340	T	C	508.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.81;SOR=5.421;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:221,18,0
chr5	16762024	rs56407231	A	C	975.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=41;ExcessHet=3.9794;FS=2.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.37;ReadPosRankSum=0.450;SOR=1.067;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,17:41:99:373,0,650
chr5	16762646	rs31511	T	C	3035.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;DB;DP=46;ExcessHet=3.0103;FS=0.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=0.011;SOR=0.829;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1378,138,0
chr5	16764255	rs375881422	CA	C	1320.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.951;DB;DP=22;ExcessHet=3.0103;FS=2.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.02;ReadPosRankSum=1.17;SOR=2.030;VQSLOD=6.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,21:22:38:563,38,0
chr5	16764334	rs250341	C	T	3364.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.090;DB;DP=73;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.39;ReadPosRankSum=-1.916e+00;SOR=0.673;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2266,218,0
chr5	16766093	rs2561232	C	T	2467.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.243;DB;DP=28;ExcessHet=3.0103;FS=2.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=-1.202e+00;SOR=1.321;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:908,84,0
chr5	16769273	rs11750538	G	A	1141.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=44;ExcessHet=3.9794;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.299;SOR=0.376;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,18:44:99:444,0,693
chr5	16780429	rs34853323	A	AT	605.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=0.00;SOR=4.174;VQSLOD=6.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
chr5	16783327	rs1560089	A	G	887.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.20;ReadPosRankSum=1.10;SOR=0.342;VQSLOD=6.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:313,0,119
chr5	16783437	rs35131059	T	TAAAC	2257.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.718;DB;DP=68;ExcessHet=3.9794;FS=2.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.81;ReadPosRankSum=1.33;SOR=1.022;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,37:68:99:1660,0,1688
chr5	16783711	rs4702172	T	C	773.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.105;SOR=0.509;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:101,0,269
chr5	16794916	rs396514	G	A	2267.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.590;DB;DP=95;ExcessHet=3.9794;FS=0.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.696;SOR=0.738;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,41:95:99:884,0,1287
chr5	16795027	rs35681033	CA	C	2290.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.550e-01;DB;DP=82;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=2.61;SOR=0.705;VQSLOD=6.45;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:40,42:82:99:1374,0,1322
chr5	16795186	rs71595987	T	TCCCTGCTCCCCAGG	365.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.88;ReadPosRankSum=-9.220e-01;SOR=0.732;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:266,0,1076
chr5	16815271	rs35892466	C	CA	507.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=0.180;SOR=3.258;VQSLOD=6.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:172,18,0
chr5	16816028	rs11471822	C	CTG	658.59	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.36;ReadPosRankSum=0.366;SOR=2.200;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:424,30,0
chr5	16818363	rs12188582	A	G	3810.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.710e-01;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=-2.644e+00;SOR=0.765;VQSLOD=22.57;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1293,131,0
chr5	16818471	rs145039990	ATG	A	228.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.253;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.80;ReadPosRankSum=0.189;SOR=1.609;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr5	16877701	rs7710976	C	G	2219.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=50;ExcessHet=1.5490;FS=1.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=-1.919e+00;SOR=0.485;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1579,150,0
chr5	16916071	rs145081788	GAA	G	2102.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=59.94;MQRankSum=1.64;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=1.52;SOR=0.770;VQSLOD=1.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,16:28:99:472,0,173
chr5	19473139	rs34972691	CT	C	519.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DB;DP=31;ExcessHet=6.9897;FS=2.179;MQ=60.00;MQRankSum=0.00;QD=5.71;ReadPosRankSum=0.267;SOR=0.391;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,7:31:68:0|1:19473139_CT_C:68,0,526:19473139
chr5	19591174	rs17285716	A	G	4154.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DB;DP=74;ExcessHet=1.5490;FS=1.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.46;ReadPosRankSum=0.903;SOR=1.002;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,38:74:99:1052,0,952
chr5	19721261	rs10941430	T	C	1661.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.93;SOR=7.523;VQSLOD=24.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:551,42,0
chr5	19721490	rs12187552	T	C	16356.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=0.816;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4980,471,0
chr5	19747498	.	G	GT	179.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.07;MQRankSum=0.674;QD=10.54;ReadPosRankSum=0.00;SOR=0.804;VQSLOD=0.586;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:62:86,0,62
chr5	21121448	rs6414912	C	T	387.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.26;SOR=4.804;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr5	21459428	rs12516075	A	T	889.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=-1.304e+00;SOR=4.977;VQSLOD=12.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:457,36,0
chr5	21460038	rs201704043	C	CAGTT	1037.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=39.76;QD=25.81;SOR=6.439;VQSLOD=4.40;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:351,24,0
chr5	21462202	rs62347213	G	C	312.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=59.35;POSITIVE_TRAIN_SITE;QD=34.72;SOR=4.615;VQSLOD=4.96;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr5	21482783	rs62347257	G	A	23691.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.804e+00;DB;DP=356;ExcessHet=6.9897;FS=1.741;MQ=57.27;MQRankSum=-6.584e+00;QD=12.56;ReadPosRankSum=1.56;SOR=0.576;VQSLOD=-4.156e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:180,176:356:99:4366,0,5052
chr5	21482802	.	C	T	2669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DP=346;ExcessHet=3.9794;FS=0.000;MQ=57.81;MQRankSum=-3.066e+00;NEGATIVE_TRAIN_SITE;QD=3.64;ReadPosRankSum=1.51;SOR=0.642;VQSLOD=-2.478e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:277,69:346:99:1201,0,8019
chr5	21482878	rs62347258	C	A	52706.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=298;ExcessHet=3.0103;FS=0.000;MQ=52.66;MQRankSum=-8.670e-01;NEGATIVE_TRAIN_SITE;QD=33.09;ReadPosRankSum=0.746;SOR=0.539;VQSLOD=-2.632e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,298:298:99:9411,892,0
chr5	21483509	rs6896251	C	T	6013.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.869e+00;DB;DP=253;ExcessHet=3.9794;FS=0.000;MQ=56.23;MQRankSum=0.602;NEGATIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=1.18;SOR=0.714;VQSLOD=-2.694e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:150,103:253:99:2444,0,4220
chr5	21491294	.	CAAA	C	603.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.751;DP=10;ExcessHet=6.9897;FS=0.000;MQ=41.07;MQRankSum=-1.018e+00;QD=17.24;ReadPosRankSum=0.478;SOR=0.824;VQSLOD=0.631;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:10:99:116,0,107
chr5	21494612	rs62349671	G	C	425.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=53.88;QD=32.75;SOR=1.609;VQSLOD=2.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:231,24,0
chr5	21494762	rs10447148	T	G	580.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=56.70;QD=32.27;SOR=1.179;VQSLOD=1.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:218,21,0
chr5	21494786	.	T	TTTTG	338.83	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=55.05;QD=25.60;SOR=1.179;VQSLOD=3.16;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr5	21585420	rs2123096	A	G	2998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=116;ExcessHet=3.9794;FS=4.111;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=-6.940e-01;SOR=1.053;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,59:116:99:1814,0,1517
chr5	21751715	rs10657805	C	CAGAA	639.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.65;ReadPosRankSum=0.792;SOR=1.828;VQSLOD=6.89;culprit=QD	GT:AD:DP:GQ:PL	0/1:6,1:7:24:24,0,249
chr5	21751737	rs112875979	G	T	123.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=9;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;QD=13.70;ReadPosRankSum=1.86;SOR=2.303;VQSLOD=19.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:21751737_G_T:132,0,128:21751737
chr5	21751739	rs369287682	GTT	G	123.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=9;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;QD=13.70;ReadPosRankSum=1.98;SOR=2.303;VQSLOD=4.57;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,5:9:99:0|1:21751737_G_T:132,0,128:21751737
chr5	21751741	rs370990145	T	TTGTGTGTGTG,*	848.70	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.67;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.43;ReadPosRankSum=-2.310e-01;SOR=1.839;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,1,5:6:99:337,225,276,131,0,122
chr5	21752050	rs6451992	A	G	13003.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=2.80;SOR=0.700;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,52:106:99:0|1:21752050_A_G:2085,0,3009:21752050
chr5	21752056	rs6451993	A	G	12972.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.31;ReadPosRankSum=2.23;SOR=0.669;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,55:109:99:0|1:21752050_A_G:2118,0,3020:21752050
chr5	21760602	rs2303748	C	A	3068.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.826e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=0.829;SOR=0.611;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:282,0,570
chr5	21802662	rs6897177	C	T	533.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.12;ReadPosRankSum=0.319;SOR=2.584;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,1:4:32:32,0,119
chr5	21816901	rs6880580	C	T	311.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.44;SOR=4.407;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	21842114	rs34987918	TA	T	202.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.24;ReadPosRankSum=1.56;SOR=0.914;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,10:18:99:211,0,155
chr5	23510158	rs34033521	AT	A	331.67	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=14;ExcessHet=6.9897;FS=3.537;MQ=59.81;MQRankSum=0.00;QD=8.09;ReadPosRankSum=1.07;SOR=1.519;VQSLOD=5.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:14:20:121,0,20
chr5	23510203	rs2973615	A	G	1369.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=29.33;SOR=6.994;VQSLOD=6.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:258,18,0
chr5	23521097	rs75883850	G	A	1146.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.856;DB;DP=105;ExcessHet=3.0103;FS=1.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.92;ReadPosRankSum=-1.564e+00;SOR=0.881;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,49:105:99:1155,0,1362
chr5	23523348	rs1874165	C	T	6063.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.08;SOR=1.317;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1904,183,0
chr5	23527919	rs2099081	A	G	10390.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.94;SOR=2.841;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3318,285,0
chr5	23528007	rs3805547	G	A	739.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=0.690;SOR=0.470;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:345,0,340
chr5	24509643	rs62349562	C	T	788.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=65;ExcessHet=3.0103;FS=0.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=0.678;SOR=0.855;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,30:65:99:797,0,934
chr5	24509947	rs3797171	C	A	1497.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.820e-01;DB;DP=27;ExcessHet=3.9794;FS=1.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=1.51;SOR=0.904;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:899,81,0
chr5	26903557	rs9687840	G	A	1016.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.430e-01;DB;DP=20;ExcessHet=6.9897;FS=1.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=-9.620e-01;SOR=0.946;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:190,0,384
chr5	26905920	rs5866810	GT	G	1761.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.41;SOR=4.209;VQSLOD=5.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:458,48,0
chr5	26907047	rs12188147	C	T	267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=0.409;SOR=1.802;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:276,0,213
chr5	26988328	rs2288466	G	A	1676.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DB;DP=106;ExcessHet=3.0103;FS=4.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=0.924;SOR=1.063;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,63:106:99:1685,0,1043
chr5	26988424	rs2288467	T	C	1099.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=94;ExcessHet=3.0103;FS=0.788;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=-6.030e-01;SOR=0.833;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,44:94:99:1108,0,1231
chr5	31297651	rs2330700	T	G	1184.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.90;ReadPosRankSum=0.325;SOR=2.247;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,6:10:99:0|1:31297651_T_G:209,0,140:31297651
chr5	31297672	rs2909573	A	C	1416.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=6.869;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:31297651_T_G:314,21,0:31297651
chr5	31299445	rs2962800	G	A	870.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.81;SOR=6.358;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:240,18,0
chr5	31302288	rs2287582	C	T	4581.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=80;ExcessHet=3.9794;FS=1.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.328;SOR=0.835;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1053,0,876
chr5	31317494	rs2302904	C	T	3949.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=76;ExcessHet=3.9794;FS=1.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=-3.430e-01;SOR=0.806;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,36:76:99:871,0,910
chr5	31317529	rs2302903	A	G	3916.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=81;ExcessHet=3.9794;FS=1.584;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=2.23;SOR=0.582;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,37:81:99:833,0,1100
chr5	31317952	rs2229575	T	C	9076.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.407e+00;DB;DP=157;ExcessHet=3.9794;FS=3.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.48;ReadPosRankSum=0.322;SOR=0.756;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:90,67:157:99:1696,0,2514
chr5	31322851	rs2962790	A	G	2197.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=3.545;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:787,72,0
chr5	31401447	rs10719	A	G	9005.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.210e-01;DB;DP=119;ExcessHet=3.0103;FS=2.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=0.393;SOR=0.908;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,46:119:99:1213,0,2041
chr5	31407139	rs507816	G	C	2904.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=53;ExcessHet=6.9897;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=0.209;SOR=0.508;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,32:53:99:1030,0,616
chr5	31409115	rs644236	T	C	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.429;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=-1.636e+00;SOR=0.446;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:286,0,247
chr5	31409252	rs2241337	A	G	783.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=52;ExcessHet=3.0103;FS=1.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=-1.651e+00;SOR=0.935;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,31:52:99:792,0,439
chr5	31410628	rs3815674	T	C	205.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=2.13;SOR=0.693;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:214,0,203
chr5	31423007	rs2287584	T	C	336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.638;DB;DP=32;ExcessHet=3.0103;FS=3.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=-4.420e-01;SOR=1.609;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,13:32:99:345,0,487
chr5	31467952	rs17408716	A	G	241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=0.052;SOR=1.426;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:250,0,275
chr5	31472087	rs6885959	T	A	1925.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=0.525;SOR=0.616;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:357,0,307
chr5	31472117	rs3763075	G	C	2483.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130e-01;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=1.09;SOR=0.784;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,16:32:99:421,0,449
chr5	31483596	rs10052174	G	A	2335.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.240;DB;DP=43;ExcessHet=3.9794;FS=0.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=0.456;SOR=0.598;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,27:43:99:646,0,409
chr5	31483753	rs201727343	GAA	G,GA	1099.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.83;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=0.180;SOR=0.904;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,8,4:16:5:239,5,93,106,0,145
chr5	31485152	rs76723306	C	T	931.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.211;DB;DP=30;ExcessHet=3.9794;FS=0.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=1.15;SOR=0.874;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:343,0,398
chr5	31485230	rs7712436	T	C	1257.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.93;SOR=3.500;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:532,42,0
chr5	31485297	rs74292533	A	T	135.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.14;ReadPosRankSum=0.00;SOR=1.981;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:143,0,26
chr5	31486390	rs12656128	T	C	327.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.389;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.58;ReadPosRankSum=1.12;SOR=0.610;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:134,0,106
chr5	31486540	rs7735863	A	G	5484.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=1.00;SOR=0.723;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:703,0,822
chr5	31486578	rs72552345	C	CT	3065.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=73;ExcessHet=3.9794;FS=1.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=1.07;SOR=0.788;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,34:73:99:1153,0,1356
chr5	31504831	.	T	G	919.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DP=87;ExcessHet=3.0103;FS=0.918;MQ=60.00;MQRankSum=0.00;QD=10.57;ReadPosRankSum=0.043;SOR=0.496;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,35:87:99:928,0,1508
chr5	31508933	rs56327412	G	GT,GTT	2352.21	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=27.48;SOR=3.647;VQSLOD=4.84;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,5,6:14:99:498,335,311,137,0,153
chr5	31508945	rs4374769	C	T	1902.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676e+00;DB;DP=15;ExcessHet=3.9794;FS=3.759;MQ=59.85;MQRankSum=0.00;QD=30.21;ReadPosRankSum=0.982;SOR=0.257;VQSLOD=5.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:385,0,153
chr5	31509057	rs35252785	G	T	144.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-1.383e+00;SOR=1.329;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr5	31515373	rs7730136	C	T	1177.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e-01;DB;DP=27;ExcessHet=3.9794;FS=7.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=-8.260e-01;SOR=1.534;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:335,0,395
chr5	31515657	rs55656741	G	A	1072.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DB;DP=51;ExcessHet=3.9794;FS=3.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=-2.890e-01;SOR=0.392;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,27:51:99:626,0,640
chr5	31529299	rs6859527	A	G	2793.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.31;SOR=3.682;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:31529299_A_G:980,66,0:31529299
chr5	31529306	rs6450850	T	C	2671.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=3.500;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:66:1|1:31529299_A_G:980,66,0:31529299
chr5	31532429	rs2291109	A	T	8830.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.11;SOR=2.418;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3067,295,0
chr5	31532685	rs6877568	C	A	1756.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.770e-01;DB;DP=56;ExcessHet=3.9794;FS=6.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.41;ReadPosRankSum=-1.764e+00;SOR=1.469;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,31:56:99:837,0,638
chr5	31532789	rs17409893	A	G	285.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.066;SOR=0.368;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:122,0,396
chr5	31534290	rs7737168	C	T	1020.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963e+00;DB;DP=60;ExcessHet=3.0103;FS=1.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=0.435;SOR=0.518;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,35:60:99:1029,0,683
chr5	31538249	rs10071110	C	T	382.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.913;DB;DP=11;ExcessHet=3.9794;FS=2.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=3.000e-03;SOR=1.609;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:195,0,133
chr5	31538692	rs17410000	A	C	1832.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=78;ExcessHet=3.9794;FS=1.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.31;ReadPosRankSum=-4.980e-01;SOR=0.831;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,30:78:99:832,0,1339
chr5	31541142	rs17410035	G	T	2019.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=108;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=1.94;SOR=0.666;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,48:108:99:1096,0,1392
chr5	31541212	rs35650579	AGTGT	A,AGT	1287.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.077;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.67;ReadPosRankSum=1.74;SOR=1.893;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,17:22:73:627,417,401,139,0,73
chr5	31935919	rs6450882	T	A	485.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.62;SOR=5.283;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr5	32000483	rs10054504	T	C	6842.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.37;DB;DP=54;ExcessHet=3.0103;FS=13.120;MQ=59.98;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.74;ReadPosRankSum=1.76;SOR=2.111;VQSLOD=0.433;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,23:54:99:792,0,896
chr5	32000585	rs140415640	GTTTGTTTTTGTTTTTGTT	G	334.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.22;SOR=4.407;VQSLOD=4.46;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:16:226,16,0
chr5	32010190	.	C	CAAAAAAAAAA	78.13	PASS	AC=2;AF=1.00;AN=2;DP=1;ExcessHet=0.7918;FS=0.000;MQ=40.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=1.609;VQSLOD=5.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:6:90,6,0
chr5	32015924	rs35635154	G	GTGA	1184.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=16;ExcessHet=1.5490;FS=3.761;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.85;ReadPosRankSum=-3.560e-01;SOR=2.448;VQSLOD=6.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:54:805,54,0
chr5	32048462	rs4867416	C	T	1380.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=2.247;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1397,123,0
chr5	32054092	rs149414	C	G	1327.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=14;ExcessHet=3.9794;FS=2.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=0.437;SOR=0.314;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:175,0,250
chr5	32057651	rs161545	G	A	2757.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.47;SOR=3.556;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:660,57,0
chr5	32057893	rs78602044	C	G	1314.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e-01;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.64;ReadPosRankSum=-1.000e+00;SOR=0.602;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,45:79:99:1323,0,896
chr5	32058115	rs151861	A	G	12223.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.92;SOR=0.832;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3711,357,0
chr5	32060985	rs35665699	T	TATC	9277.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.49;SOR=2.475;VQSLOD=5.29;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,52:52:99:2430,165,0
chr5	32069910	rs6862076	T	C	269.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=-8.340e-01;SOR=0.495;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:278,0,130
chr5	32071325	rs56223765	G	A	514.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.925;SOR=0.622;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:523,0,415
chr5	32072213	rs3797064	A	C	1533.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DB;DP=109;ExcessHet=3.0103;FS=3.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=-1.520e-01;SOR=0.400;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,59:109:99:1542,0,1303
chr5	32074392	rs2291114	G	A	3156.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=213;ExcessHet=3.0103;FS=0.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.071;SOR=0.654;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,111:213:99:3165,0,2765
chr5	32074916	rs33999865	CT	C	108.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.350e-01;DB;DP=8;ExcessHet=3.0103;FS=6.021;MQ=60.00;MQRankSum=0.00;QD=13.57;ReadPosRankSum=-1.800e-01;SOR=3.912;VQSLOD=2.18;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,6:8:29:117,0,29
chr5	32087228	rs157494	C	T	1089.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=71;ExcessHet=3.0103;FS=1.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=0.633;SOR=0.407;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,34:71:99:1098,0,1134
chr5	32087311	.	T	C	3065.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490e+00;DP=226;ExcessHet=3.0103;FS=6.468;MQ=60.00;MQRankSum=0.00;QD=13.56;ReadPosRankSum=-1.073e+00;SOR=0.369;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,113:226:99:3074,0,3262
chr5	32087802	rs157497	A	G	3416.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270e+00;DB;DP=231;ExcessHet=3.0103;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=-3.520e-01;SOR=0.625;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:139,92:231:99:0|1:32087802_A_G:3425,0,7635:32087802
chr5	32087808	rs3733720	G	C	3434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DB;DP=236;ExcessHet=3.0103;FS=1.022;MQ=60.00;MQRankSum=0.00;QD=14.55;ReadPosRankSum=-2.850e-01;SOR=0.649;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:143,93:236:99:0|1:32087802_A_G:3443,0,7648:32087802
chr5	32090294	rs10066063	G	A	3732.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=341;ExcessHet=3.0103;FS=2.916;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-5.660e-01;SOR=0.862;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:190,151:341:99:3741,0,4757
chr5	32091385	.	CTT	C	127.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DP=4;ExcessHet=6.9897;FS=0.000;MQ=59.61;MQRankSum=0.319;QD=6.09;ReadPosRankSum=1.72;SOR=0.776;VQSLOD=0.191;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:37:48,0,37
chr5	32093070	rs16889442	G	A	1000.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.39;DB;DP=57;ExcessHet=3.0103;FS=2.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.55;ReadPosRankSum=0.386;SOR=0.380;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,32:57:99:1009,0,508
chr5	32093210	rs28450841	C	T	689.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.14;ReadPosRankSum=0.105;SOR=0.922;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:698,0,375
chr5	32098211	rs72743810	A	G	114.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.84;SOR=2.833;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr5	32101168	rs2279232	A	T	15039.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620e+00;DB;DP=190;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-8.240e-01;SOR=0.629;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:114,76:190:99:1659,0,2888
chr5	32101541	.	A	G	54.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.07;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,114
chr5	32135599	rs161539	G	A	5199.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.63;SOR=3.048;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1745,144,0
chr5	32234104	rs150442906	TCTG	T	350.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.760e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.94;ReadPosRankSum=0.337;SOR=1.609;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,9:13:99:359,0,154
chr5	32239166	rs145308792	T	C	767.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.290e-01;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=1.53;SOR=0.734;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,34:88:99:776,0,1382
chr5	32239305	rs78185618	A	C	501.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=0.915;SOR=0.656;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:510,0,268
chr5	32239406	rs114392491	T	C	123.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=-6.520e-01;SOR=0.941;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:132,0,101
chr5	32242381	rs7729256	G	T	6483.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=27.88;SOR=3.648;VQSLOD=5.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1594,141,0
chr5	32247907	rs116472888	G	C	219.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=0.063;SOR=0.473;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,6:14:99:0|1:32247907_G_C:228,0,607:32247907
chr5	32247912	rs115695509	G	A	216.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=0.400;SOR=0.399;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,6:15:99:0|1:32247907_G_C:225,0,640:32247907
chr5	32255646	rs16889537	C	G	405.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.910;DB;DP=37;ExcessHet=3.0103;FS=1.380;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=0.635;SOR=0.451;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,15:37:99:414,0,653
chr5	32256038	rs78264650	G	A	354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=36;ExcessHet=3.0103;FS=3.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=-3.570e-01;SOR=1.496;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,14:36:99:363,0,581
chr5	32263099	rs61418287	G	T	906.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.211e+00;DB;DP=58;ExcessHet=3.0103;FS=1.314;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-7.800e-01;SOR=1.115;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,31:58:99:915,0,748
chr5	32263316	rs61748194	C	T	2056.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.500e-01;DB;DP=177;ExcessHet=3.0103;FS=1.892;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-8.500e-02;SOR=0.853;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,85:177:99:2065,0,2313
chr5	32268614	.	TA	T	30.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.34;ReadPosRankSum=0.00;SOR=0.495;VQSLOD=5.48;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,3:7:39:39,0,63
chr5	32270747	rs59928961	C	G	143.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=0.135;SOR=0.330;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:93:152,0,93
chr5	32296600	rs115310011	G	A	459.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.050e-01;DB;DP=33;ExcessHet=3.0103;FS=3.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-3.800e-01;SOR=0.260;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:468,0,386
chr5	32379210	rs1862636	G	A	6083.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=1.197;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2139,201,0
chr5	32380600	rs10658949	T	TAATA	256.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.71;SOR=3.912;VQSLOD=5.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	32387987	rs2910928	A	T	397.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=0.598;SOR=2.303;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,104
chr5	32388471	rs889318	T	C	1569.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.010e-01;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.697;SOR=0.941;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:319,0,322
chr5	32394651	rs76584396	C	T	152.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.71;SOR=3.258;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr5	32395502	rs2910932	C	T	981.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=5.058;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:291,24,0
chr5	32403346	rs4867440	C	T	16839.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=187;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.01;SOR=1.024;VQSLOD=19.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,187:187:99:5907,560,0
chr5	32403543	rs79403238	T	C	763.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=71;ExcessHet=3.0103;FS=1.132;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=-1.570e+00;SOR=0.897;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,27:71:99:772,0,1194
chr5	32404320	rs79275345	A	C	59.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,134
chr5	32415360	rs5867145	TA	T	3875.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=2.664;VQSLOD=6.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1211,111,0
chr5	32417694	rs178935	G	A	2389.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=1.771;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:755,72,0
chr5	32419849	rs324428	T	C	3007.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.45;ReadPosRankSum=0.037;SOR=0.800;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,26:43:99:692,0,389
chr5	32444163	rs375370062	AGGCGG	A	2123.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.650e-01;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.82;ReadPosRankSum=1.32;SOR=2.948;VQSLOD=4.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,12:17:99:489,0,174
chr5	32444199	rs2922295	C	G	4039.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.465e+00;DB;DP=42;ExcessHet=3.0103;FS=5.255;MQ=60.00;MQRankSum=0.00;QD=29.93;ReadPosRankSum=1.01;SOR=2.147;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1545,126,0
chr5	32444286	rs183443	A	G	12042.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.61;DB;DP=182;ExcessHet=3.0103;FS=0.666;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.77;ReadPosRankSum=-1.323e+00;SOR=0.641;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,182:182:99:5239,545,0
chr5	32523298	rs687659	T	A	4889.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.303e+00;DB;DP=108;ExcessHet=1.5490;FS=1.428;MQ=52.20;MQRankSum=-6.032e+00;QD=25.34;ReadPosRankSum=0.519;SOR=0.580;VQSLOD=-3.853e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3634,324,0
chr5	32523343	rs2457151	C	T	14605.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=55.99;POSITIVE_TRAIN_SITE;QD=33.65;SOR=1.615;VQSLOD=4.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:5048,464,0
chr5	32591804	.	AT	A	161.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.221;DP=20;ExcessHet=6.9897;FS=0.000;MQ=59.77;MQRankSum=0.00;QD=4.04;ReadPosRankSum=0.495;SOR=0.603;VQSLOD=5.45;culprit=QD	GT:AD:DP:GQ:PL	0/1:11,9:20:83:83,0,158
chr5	32711653	rs138317732	A	ACTTTTT	609.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.59;SOR=4.804;VQSLOD=5.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr5	32725072	rs1147224	T	C	2385.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.46;ReadPosRankSum=0.079;SOR=0.779;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,11:32:99:331,0,682
chr5	32738891	rs2292026	C	T	504.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.799e+00;DB;DP=13;ExcessHet=3.9794;FS=2.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=0.132;SOR=0.200;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:216,0,175
chr5	32775047	rs1173743	G	T	2045.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.35;DB;DP=33;ExcessHet=3.9794;FS=2.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=0.297;SOR=1.085;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1088,99,0
chr5	32784776	rs2246427	A	G	2071.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=67;ExcessHet=3.9794;FS=3.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=0.458;SOR=1.096;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,38:67:99:1116,0,740
chr5	32786389	rs2270915	A	G	1104.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=2.37;SOR=0.789;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,22:33:99:556,0,234
chr5	32789392	rs2287661	G	A	691.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.054e+00;DB;DP=8;ExcessHet=3.9794;FS=4.357;MQ=60.00;MQRankSum=0.00;QD=23.06;ReadPosRankSum=-5.360e-01;SOR=2.655;VQSLOD=18.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:32789392_G_A:312,24,0:32789392
chr5	32789393	rs3214434	TA	T	188.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.45;ReadPosRankSum=-2.720e-01;SOR=0.859;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:94:0|1:32789392_G_A:94,0,173:32789392
chr5	32789852	rs1173756	T	C	4552.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.526e+00;DB;DP=63;ExcessHet=3.9794;FS=0.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.99;ReadPosRankSum=1.30;SOR=0.636;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:1952,189,0
chr5	33448739	rs146538659	A	C	1061.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-1.256e+00;SOR=0.681;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,46:86:99:1070,0,1011
chr5	33448962	rs5867190	A	AT	1956.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=5.318;VQSLOD=6.54;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:370,33,0
chr5	33453368	.	CTT	C	561.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DP=18;ExcessHet=6.9897;FS=2.322;MQ=59.87;MQRankSum=0.00;QD=9.37;ReadPosRankSum=0.771;SOR=1.091;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:18:99:115,0,186
chr5	33455121	rs144381018	C	T	746.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.664;DB;DP=68;ExcessHet=3.0103;FS=0.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=1.47;SOR=0.506;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,33:68:99:755,0,780
chr5	33460133	.	C	CT	35.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DP=7;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=5.04;ReadPosRankSum=-3.280e-01;SOR=0.086;VQSLOD=5.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:41:41,0,51
chr5	33461971	rs17455135	A	G	1815.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=0.892;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1832,159,0
chr5	33535060	rs25754	G	A	1932.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552e+00;DB;DP=43;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.72;ReadPosRankSum=-9.890e-01;SOR=0.656;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1334,127,0
chr5	33546113	rs11338120	TA	T	875.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.546;DB;DP=20;ExcessHet=3.9794;FS=0.954;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-4.100e-02;SOR=0.914;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,18:20:8:414,8,0
chr5	33546432	rs29967	A	G	607.19	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.630e-01;DB;DP=10;ExcessHet=1.5490;FS=5.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.40;ReadPosRankSum=0.691;SOR=3.611;VQSLOD=15.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:419,30,0
chr5	33549559	rs462629	C	A	3124.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=65;ExcessHet=1.5490;FS=1.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=-7.210e-01;SOR=0.504;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2091,195,0
chr5	33561028	rs35553442	GA	G	1284.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.360;DB;DP=25;ExcessHet=3.9794;FS=9.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.208;SOR=2.084;VQSLOD=4.45;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,24:25:49:602,49,0
chr5	33589017	rs4242083	A	G	556.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.24;SOR=5.421;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:244,18,0
chr5	33595996	rs10461924	C	T	5974.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=107;ExcessHet=3.9794;FS=1.436;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=1.74;SOR=0.606;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,53:107:99:1433,0,1278
chr5	33596193	rs10461925	A	G	2199.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.875;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=0.988;SOR=0.659;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:538,0,462
chr5	33596224	rs10461703	C	T	1672.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.748e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=-1.232e+00;SOR=0.693;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:405,0,378
chr5	33596243	rs10461704	C	T	1300.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=-1.420e-01;SOR=0.512;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:189,0,282
chr5	33615904	rs10057235	G	A	4267.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.640e+00;DB;DP=68;ExcessHet=3.9794;FS=2.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=0.806;SOR=0.964;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2029,204,0
chr5	33630839	rs4260678	A	G	940.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=28;ExcessHet=3.9794;FS=1.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.41;ReadPosRankSum=2.29;SOR=0.320;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:443,0,390
chr5	33631098	rs79948421	G	A	302.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.880e-01;DB;DP=17;ExcessHet=3.0103;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.78;ReadPosRankSum=-8.490e-01;SOR=1.981;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:311,0,246
chr5	33637596	rs4076945	G	A	6066.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.710e-01;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.96;ReadPosRankSum=0.631;SOR=0.773;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1848,165,0
chr5	33637891	rs4076946	C	A	5369.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.133e+00;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.62;ReadPosRankSum=-1.100e-01;SOR=0.726;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,35:35:99:1|1:33637891_C_A:1520,105,0:33637891
chr5	33637899	rs4076947	G	A	5035.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.792e+00;DB;DP=32;ExcessHet=3.0103;FS=1.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=0.157;SOR=0.902;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:33637891_C_A:1480,102,0:33637891
chr5	33643308	rs10065974	A	T	345.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.97;SOR=4.615;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr5	33643395	rs10066043	A	T	737.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.329e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.75;ReadPosRankSum=-6.510e-01;SOR=0.957;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:280,0,128
chr5	33643617	rs4866409	C	T	2469.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=77;ExcessHet=1.5490;FS=3.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=-1.210e+00;SOR=1.055;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,33:77:99:771,0,1005
chr5	33648707	rs11949958	A	G	698.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.95;ReadPosRankSum=0.00;SOR=4.615;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:23:136,0,23
chr5	33648842	rs34079160	GTT	G	3136.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.496;DB;DP=38;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.37;ReadPosRankSum=-8.230e-01;SOR=0.826;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,17:38:99:651,0,887
chr5	33648906	rs6870538	G	C	3583.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.160e-01;DB;DP=69;ExcessHet=1.5490;FS=2.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=0.145;SOR=0.465;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,31:69:99:749,0,1007
chr5	33649220	rs4866353	A	G	911.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.346e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=0.471;SOR=1.022;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:206,0,278
chr5	33649637	rs4242082	G	A	3604.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=71;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.82;ReadPosRankSum=-6.670e-01;SOR=0.703;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,36:71:99:839,0,883
chr5	33649807	rs4504387	C	A	4539.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.311e+00;DB;DP=112;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=-1.547e+00;SOR=0.655;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,48:112:99:1083,0,1657
chr5	33649905	rs4621563	G	A	1862.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.257;DB;DP=30;ExcessHet=1.5490;FS=4.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.40;ReadPosRankSum=-1.286e+00;SOR=1.990;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:471,0,448
chr5	33649995	rs11424273	T	TA	336.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=1.5490;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.46;ReadPosRankSum=0.712;SOR=3.014;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,2:7:54:54,0,166
chr5	33661909	rs6451007	A	G	582.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.31;SOR=5.670;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:151,12,0
chr5	33751389	rs5867210	T	TA	799.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.830e-01;DB;DP=15;ExcessHet=3.9794;FS=3.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=1.000e-03;SOR=1.371;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:208,0,124
chr5	33751454	rs1530507	A	T	3042.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DB;DP=45;ExcessHet=3.9794;FS=1.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=0.605;SOR=0.953;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:621,0,466
chr5	33881669	rs11442532	C	CT	496.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=18;ExcessHet=3.9794;FS=7.838;MQ=60.00;MQRankSum=0.00;QD=11.03;ReadPosRankSum=-4.500e-02;SOR=2.143;VQSLOD=3.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,11:18:99:231,0,129
chr5	33944512	rs35404	A	G	108.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:117,0,31
chr5	33944594	.	AAGAGAGAG	A	153.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.80;ReadPosRankSum=1.28;SOR=0.223;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:72:162,0,72
chr5	33951551	rs2278007	A	G	150.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-8.420e-01;SOR=1.329;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:159,0,61
chr5	33951693	rs16891982	C	G	2699.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.500;DB;DP=46;ExcessHet=3.9794;FS=0.797;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-6.100e-02;SOR=0.859;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,33:46:99:765,0,363
chr5	33954137	rs6451045	T	C	628.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=49.45;NEGATIVE_TRAIN_SITE;QD=26.99;SOR=5.670;VQSLOD=-7.480e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr5	33954511	rs2287949	T	C	8718.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=0.859;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2021,204,0
chr5	33954880	rs35389	G	A	299.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.25;ReadPosRankSum=0.967;SOR=1.802;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:75,0,31
chr5	33963731	rs10533634	AAAC	A	2056.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.28;SOR=4.849;VQSLOD=6.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:482,33,0
chr5	33964210	rs183671	T	G	2352.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=35;ExcessHet=3.9794;FS=0.803;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.79;ReadPosRankSum=0.132;SOR=0.570;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,18:35:99:595,0,380
chr5	33964241	rs6451048	A	G	2860.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.06;SOR=1.582;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:984,87,0
chr5	33964352	rs6451049	T	C	1186.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=4.479;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:446,33,0
chr5	33968752	rs2067350	C	CA	1162.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=1.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.43;ReadPosRankSum=1.14;SOR=0.317;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:53:0|1:33968752_C_CA:124,0,53:33968752
chr5	33968761	rs6874013	C	T	1668.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=2.362;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:33968752_C_CA:298,21,0:33968752
chr5	33968890	rs7718382	G	A	328.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=44;ExcessHet=3.0103;FS=1.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.46;ReadPosRankSum=0.513;SOR=0.374;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:337,0,836
chr5	33969170	rs10687341	C	CTGTGTGTGTGTG	695.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.223;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=58.91;MQRankSum=-9.980e-01;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=2.17;SOR=1.609;VQSLOD=0.632;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:0,8:8:94:423,0,94
chr5	33982568	rs250413	G	A	591.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=-5.040e-01;SOR=1.139;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,22:28:85:600,0,85
chr5	33989518	rs2278008	C	T	9705.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.454e+00;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=-4.820e-01;SOR=0.701;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3878,363,0
chr5	33994116	rs10472909	A	T	2932.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.019;DB;DP=56;ExcessHet=1.5490;FS=1.816;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=-8.820e-01;SOR=0.514;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,31:56:99:773,0,605
chr5	33994182	rs16892096	T	C	597.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=-6.570e-01;SOR=0.600;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,27:73:99:606,0,1141
chr5	33994316	rs11742345	G	A	1145.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.95;ReadPosRankSum=-7.980e-01;SOR=0.435;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:351,0,164
chr5	33998883	rs2287939	A	G	5118.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-01;DB;DP=73;ExcessHet=3.9794;FS=1.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=1.01;SOR=0.836;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,40:73:99:976,0,808
chr5	33999079	rs10941110	G	A	572.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=1.31;SOR=2.093;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:61:61,0,161
chr5	34004707	rs10941112	C	T	3742.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e-01;DB;DP=89;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=-2.730e-01;SOR=0.709;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,39:89:99:927,0,1254
chr5	34008100	rs3195676	C	T	11131.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=309;ExcessHet=1.5490;FS=1.258;MQ=59.99;MQRankSum=-1.016e+00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=0.450;SOR=0.803;VQSLOD=2.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:158,151:309:99:3768,0,3877
chr5	34008206	rs147299668	CCGGCGCCACGCCCCCAGCCG	C	2930.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=61;ExcessHet=1.5490;FS=2.736;MQ=59.98;MQRankSum=0.00;QD=27.39;ReadPosRankSum=0.084;SOR=1.200;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,25:61:99:906,0,1973
chr5	34033670	rs299594	T	C	5094.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=1.74;SOR=0.706;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,40:78:99:1142,0,933
chr5	34035530	rs186195	T	C	1514.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.181;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=0.204;SOR=1.241;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:407,0,271
chr5	34035609	rs17583316	T	C	1553.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.430e-01;DB;DP=70;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.09;ReadPosRankSum=1.66;SOR=0.685;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,33:70:99:830,0,967
chr5	34182013	rs79199933	C	T	213.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=50.08;MQRankSum=0.060;NEGATIVE_TRAIN_SITE;QD=4.19;ReadPosRankSum=-4.480e-01;SOR=0.854;VQSLOD=-3.646e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,2:16:32:32,0,441
chr5	34183081	.	CT	C,CTT	783.13	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.334;DP=33;ExcessHet=3.0103;FS=0.000;MQ=51.05;MQRankSum=-3.013e+00;QD=6.87;ReadPosRankSum=0.469;SOR=0.834;VQSLOD=-9.180e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,9,9:33:99:300,132,276,178,0,327
chr5	34192694	rs62367011	A	G	31.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.690e+00;DB;DP=494;ExcessHet=3.0103;FS=0.000;MQ=59.34;MQRankSum=-4.331e+00;NEGATIVE_TRAIN_SITE;QD=0.06;ReadPosRankSum=-2.365e+00;SOR=0.753;VQSLOD=-3.410e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:442,52:494:40:40,0,11934
chr5	34192711	rs201354078	C	G	1336.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.610e-01;DB;DP=485;ExcessHet=3.0103;FS=0.000;MQ=59.20;MQRankSum=-6.610e+00;QD=2.76;ReadPosRankSum=0.117;SOR=0.779;VQSLOD=-4.414e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:398,87:485:99:1345,0,11462
chr5	34193722	rs75112783	T	C	250.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-02;DB;DP=131;ExcessHet=3.0103;FS=0.738;MQ=59.20;MQRankSum=1.36;NEGATIVE_TRAIN_SITE;QD=1.91;ReadPosRankSum=0.944;SOR=0.776;VQSLOD=-1.328e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:105,26:131:99:259,0,4058
chr5	34193865	rs71260960	A	G	446.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=33;ExcessHet=6.9897;FS=7.112;MQ=55.68;MQRankSum=-6.580e-01;NEGATIVE_TRAIN_SITE;QD=3.06;ReadPosRankSum=0.434;SOR=1.671;VQSLOD=-2.112e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,10:33:99:248,0,737
chr5	34687911	rs2279604	G	A	1641.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=3.258;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:777,69,0
chr5	34688210	rs142375133	CGACAAA	C	4925.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=1.631;VQSLOD=5.95;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,51:51:99:2295,154,0
chr5	34716120	rs1867714	G	A	989.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.515e+00;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.809;SOR=0.697;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,27:72:99:0|1:34716120_G_A:998,0,2770:34716120
chr5	34716124	rs1867715	A	G	989.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.773e+00;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.791;SOR=0.697;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:45,27:72:99:0|1:34716120_G_A:998,0,2770:34716120
chr5	34716270	rs1867716	A	C	1188.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=99;ExcessHet=3.0103;FS=3.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=1.21;SOR=0.409;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,44:99:99:1197,0,1465
chr5	34795981	rs6897719	C	T	367.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.875e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.49;ReadPosRankSum=-9.910e-01;SOR=0.556;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,21:49:99:376,0,803
chr5	34803586	rs7719160	T	C	98.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=-1.282e+00;SOR=0.223;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:104,0,26
chr5	34803616	rs35082372	C	T	158.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.67;ReadPosRankSum=-5.240e-01;SOR=0.223;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:30:0|1:34803616_C_T:165,0,30:34803616
chr5	34803619	rs34242665	G	A	158.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.67;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,4:5:30:0|1:34803616_C_T:165,0,30:34803616
chr5	34803675	rs66603667	AC	A	373.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=59.37;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=1.28;SOR=1.911;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:31:65,0,31
chr5	34808652	rs111951383	G	A	1383.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.960;DB;DP=126;ExcessHet=3.0103;FS=2.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.944;SOR=0.925;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,59:126:99:1392,0,1550
chr5	34808797	rs113312119	T	C	1113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.069;DB;DP=67;ExcessHet=3.0103;FS=5.205;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=-8.170e-01;SOR=1.385;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,41:67:99:1122,0,647
chr5	34810971	rs111531050	G	A	132.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-01;DB;DP=11;ExcessHet=3.0103;FS=2.632;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-8.700e-02;SOR=0.180;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:141,0,189
chr5	34811131	rs35607113	G	A	475.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=58;ExcessHet=3.0103;FS=1.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.19;ReadPosRankSum=1.89;SOR=0.791;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,22:58:99:0|1:34811131_G_A:484,0,1404:34811131
chr5	34811137	rs2271522	T	G	4276.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=61;ExcessHet=3.9794;FS=6.847;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.659;SOR=0.605;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,37:61:99:1|0:34811131_G_A:851,0,860:34811131
chr5	34811397	rs112790514	A	G	92.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:101,0,66
chr5	34811734	rs17522578	C	T	346.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.960e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.86;ReadPosRankSum=-3.230e-01;SOR=2.670;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,10:12:45:355,0,45
chr5	34811794	rs114935797	T	C	550.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=1.36;SOR=1.358;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,17:27:99:559,0,290
chr5	34812165	rs144273070	G	GA	98.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.19;ReadPosRankSum=0.236;SOR=1.371;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:107,0,164
chr5	34812408	rs112990724	A	G	656.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.862e+00;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=1.30;SOR=0.730;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,27:47:99:665,0,524
chr5	34812489	rs111847320	A	G	204.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=13;ExcessHet=3.0103;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.693;SOR=2.584;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:213,0,189
chr5	34814900	rs17522675	A	G	91.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=-1.440e+00;SOR=0.693;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,107
chr5	34818976	rs3884194	G	GT	2386.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.01;DB;DP=52;ExcessHet=3.9794;FS=1.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=1.89;SOR=0.558;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,25:52:99:496,0,596
chr5	34822926	rs7730728	T	C	818.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=54.14;MQRankSum=-1.732e+00;NEGATIVE_TRAIN_SITE;QD=21.55;ReadPosRankSum=2.54;SOR=0.788;VQSLOD=-3.089e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:278,0,235
chr5	34824555	rs1048944	G	T	2493.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=0.750;SOR=0.726;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:225,0,565
chr5	34830788	rs17523026	C	T	861.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796e+00;DB;DP=108;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.97;ReadPosRankSum=0.695;SOR=0.765;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,38:108:99:870,0,2027
chr5	34840841	rs6451173	A	G	561.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.600e-02;DB;DP=60;ExcessHet=3.0103;FS=5.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.35;ReadPosRankSum=-1.243e+00;SOR=1.440;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,22:60:99:570,0,1046
chr5	34845473	rs336486	C	A	1684.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=4.712;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:369,30,0
chr5	34850570	rs11383944	T	TG	1555.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=7.523;VQSLOD=7.44;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,8:8:24:299,24,0
chr5	34863220	rs3846632	G	T	1085.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.05;SOR=4.407;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:273,21,0
chr5	34866750	rs34319208	C	CT	140.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=59.22;POSITIVE_TRAIN_SITE;QD=28.13;SOR=3.611;VQSLOD=6.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:63,6,0
chr5	34880750	.	CT	C	648.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.200e-01;DP=44;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=4.54;ReadPosRankSum=0.628;SOR=0.740;VQSLOD=5.46;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,15:44:99:255,0,561
chr5	34925312	.	CT	C	134.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.734;DP=15;ExcessHet=3.9794;FS=2.764;MQ=59.42;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.16;ReadPosRankSum=0.437;SOR=2.093;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,3:15:30:30,0,218
chr5	34930201	rs27160	T	C	1579.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.44;SOR=4.664;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:808,66,0
chr5	34945812	rs6868348	A	G	1150.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=59.67;POSITIVE_TRAIN_SITE;QD=31.11;SOR=2.242;VQSLOD=5.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:57:1|1:34945797_CT_C:615,57,0:34945797
chr5	34954588	rs37437	T	C	3226.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.95;SOR=5.598;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:835,69,0
chr5	35003683	rs11426533	C	CT	160.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=11;ExcessHet=3.9794;FS=2.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.16;ReadPosRankSum=-7.780e-01;SOR=1.765;VQSLOD=6.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,3:11:47:47,0,160
chr5	35010138	rs466067	A	G	8077.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=0.780;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2484,249,0
chr5	35013010	rs200794102	AAG	A	1713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850e-01;DB;DP=85;ExcessHet=3.0103;FS=0.852;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=2.03;SOR=0.527;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1722,0,1595
chr5	35025770	rs344515	G	A	1696.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.717;DB;DP=20;ExcessHet=3.9794;FS=13.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=0.578;SOR=3.442;VQSLOD=12.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:185,0,430
chr5	35026683	rs344513	A	G	5524.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.160;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.10;ReadPosRankSum=-1.970e-01;SOR=1.361;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,43:44:93:1425,93,0
chr5	35032769	rs237252	G	A	2215.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.495e+00;DB;DP=15;ExcessHet=3.0103;FS=4.279;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.09;ReadPosRankSum=0.850;SOR=2.833;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:340,0,125
chr5	35033047	rs2291698	C	T	593.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-1.831e+00;SOR=0.614;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,24:56:99:602,0,712
chr5	35033225	rs2291699	G	A	1018.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=10;ExcessHet=3.0103;FS=1.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=0.816;SOR=0.402;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:139,0,216
chr5	35033243	rs2291700	A	T	975.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.48;SOR=1.270;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:409,30,0
chr5	35033526	rs2291701	C	T	337.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.120e-01;DB;DP=46;ExcessHet=3.0103;FS=1.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.33;ReadPosRankSum=-8.540e-01;SOR=0.941;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,16:46:99:346,0,795
chr5	35033605	rs180749	G	A	4799.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.97;SOR=1.171;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1128,111,0
chr5	35033706	rs2291702	T	C	1552.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.04;ReadPosRankSum=-9.920e-01;SOR=3.442;VQSLOD=18.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:95:200,0,95
chr5	35035579	rs344156	A	G	2977.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.426e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=1.97;SOR=0.707;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,11:32:99:238,0,612
chr5	35035609	rs180748	A	G	2973.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.19;SOR=3.849;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:35035609_A_G:874,60,0:35035609
chr5	35035618	rs149274	C	T	2773.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.32;SOR=4.479;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:54:1|1:35035609_A_G:808,54,0:35035609
chr5	35035666	rs189362	T	G	1095.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.60;SOR=5.211;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:322,24,0
chr5	35035707	rs2307663	G	GGGA	390.06	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.29;SOR=2.093;VQSLOD=4.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	35035768	rs344155	T	G	250.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.09;SOR=0.941;VQSLOD=19.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	35036718	rs12519332	A	G	574.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.81;ReadPosRankSum=0.598;SOR=2.712;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr5	35037006	rs171081	T	C	7875.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=0.811;SOR=0.688;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2104,198,0
chr5	35039437	rs2279651	A	G	788.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=-7.740e-01;SOR=0.665;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:361,0,453
chr5	35039486	rs37370	C	T	4358.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.82;SOR=1.246;VQSLOD=20.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1424,141,0
chr5	35047745	rs11341266	TG	T	606.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=5.892;VQSLOD=6.53;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:103,9,0
chr5	35047845	rs40201	C	T	2359.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.130e-01;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=0.597;SOR=0.754;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,15:24:99:502,0,264
chr5	35049285	rs148997013	G	C	881.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200e-01;DB;DP=62;ExcessHet=3.0103;FS=0.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=0.642;SOR=0.914;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,33:62:99:890,0,780
chr5	35089400	rs249538	C	G	75.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.80;SOR=2.303;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr5	35641582	rs6897513	A	C	3325.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=44;ExcessHet=3.9794;FS=0.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.38;ReadPosRankSum=1.24;SOR=0.612;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1493,132,0
chr5	35643615	rs10941252	G	A	5906.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.199e+00;DB;DP=88;ExcessHet=3.9794;FS=0.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.58;ReadPosRankSum=-5.630e-01;SOR=0.648;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2923,264,0
chr5	35643920	rs2035992	T	G	374.46	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.559e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=1.32;SOR=0.693;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:225,21,0
chr5	35643987	rs2035993	A	G	148.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.80;ReadPosRankSum=-1.150e+00;SOR=2.303;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
chr5	35644336	rs2035994	T	G	665.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.881e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=-7.000e-01;SOR=1.402;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:253,21,0
chr5	35644621	rs7706444	T	C	2228.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.800e-01;DB;DP=33;ExcessHet=3.9794;FS=1.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=1.80;SOR=0.549;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:999,99,0
chr5	35654711	rs2270558	C	T	3412.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.510e-01;DB;DP=64;ExcessHet=3.9794;FS=3.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.46;ReadPosRankSum=0.819;SOR=0.492;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1883,190,0
chr5	35659355	rs9292598	T	C	2348.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=0.205;SOR=0.698;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1270,123,0
chr5	35675746	rs7703256	C	T	612.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=1.25;SOR=0.997;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:342,24,0
chr5	35709095	rs13170082	C	T	3670.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e+00;DB;DP=48;ExcessHet=3.0103;FS=1.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-3.930e-01;SOR=0.971;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:620,0,569
chr5	35709184	rs13170390	G	C	2796.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=33;ExcessHet=3.0103;FS=2.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=0.723;SOR=1.276;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:518,0,360
chr5	35712780	rs10078803	A	G	7047.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.850e-01;DB;DP=85;ExcessHet=3.0103;FS=1.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=1.45;SOR=0.508;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1089,0,1092
chr5	35713007	rs10073537	T	G	7587.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=71;ExcessHet=3.0103;FS=3.121;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.35;ReadPosRankSum=-4.110e-01;SOR=1.110;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,41:71:99:1085,0,831
chr5	35739960	rs10043875	A	G	1840.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.848e+00;DB;DP=19;ExcessHet=3.0103;FS=2.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=-3.770e-01;SOR=0.330;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:676,57,0
chr5	35753715	rs11957963	T	C	2257.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=31;ExcessHet=3.9794;FS=0.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=0.710;SOR=0.523;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,19:31:99:513,0,330
chr5	35763877	rs11298650	AG	A	3202.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.390e-01;DB;DP=25;ExcessHet=3.9794;FS=4.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.03;ReadPosRankSum=-1.100e-01;SOR=0.277;VQSLOD=6.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,14:25:99:491,0,369
chr5	35763895	rs6876874	T	C	3071.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.318e+00;DB;DP=21;ExcessHet=3.0103;FS=1.855;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=-9.210e-01;SOR=1.402;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:35763895_T_C:916,63,0:35763895
chr5	35763916	rs6895801	A	G	2120.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.377e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.91;ReadPosRankSum=0.175;SOR=1.340;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:54:1|1:35763895_T_C:810,54,0:35763895
chr5	35763968	rs6896356	G	T	659.03	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.48;ReadPosRankSum=0.210;SOR=4.294;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:129,9,0
chr5	35764587	rs4869466	G	A	5305.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.239e+00;DB;DP=63;ExcessHet=3.0103;FS=3.784;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=0.392;SOR=1.093;VQSLOD=6.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2181,189,0
chr5	35764603	rs4869467	A	G	6187.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.017;DB;DP=83;ExcessHet=3.0103;FS=1.506;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-8.770e-01;SOR=0.924;VQSLOD=6.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2701,249,0
chr5	35764696	rs4242258	C	T	8302.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.147e+00;DB;DP=117;ExcessHet=3.0103;FS=3.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.70;ReadPosRankSum=1.06;SOR=0.514;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3647,351,0
chr5	35776239	rs11749262	A	G	231.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=21;ExcessHet=3.0103;FS=2.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=1.23;SOR=2.093;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:240,0,426
chr5	35789164	rs1494576	G	A	3232.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.679e+00;DB;DP=50;ExcessHet=3.9794;FS=2.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=-1.217e+00;SOR=0.910;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1588,150,0
chr5	35792356	rs7730148	A	C	4121.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.63;SOR=6.439;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1043,84,0
chr5	35795738	rs716971	T	C	901.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.919;DB;DP=15;ExcessHet=3.9794;FS=1.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.98;ReadPosRankSum=-4.760e-01;SOR=0.307;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:346,0,113
chr5	35799994	rs3822735	A	G	1265.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=30;ExcessHet=1.5490;FS=5.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=-4.400e-02;SOR=0.227;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:981,90,0
chr5	35857177	rs1353252	G	C	5050.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=79;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=-2.460e-01;SOR=0.729;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,42:79:99:1138,0,937
chr5	35857207	rs1353251	C	T	1720.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.370e-01;DB;DP=84;ExcessHet=3.9794;FS=2.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.30;ReadPosRankSum=0.447;SOR=0.918;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,39:84:99:937,0,1110
chr5	35857235	rs1494561	C	G	5317.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DB;DP=76;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=1.32;SOR=0.685;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,46:76:99:1171,0,788
chr5	35857262	rs1353250	A	G	4918.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.557;DB;DP=72;ExcessHet=3.9794;FS=1.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.58;ReadPosRankSum=3.04;SOR=0.586;VQSLOD=21.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:31,41:72:99:1008,0,779
chr5	35857308	rs5867289	T	TC	4610.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=59;ExcessHet=3.9794;FS=1.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=1.05;SOR=0.811;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,33:59:99:1155,0,874
chr5	35861068	rs1494558	T	C	6465.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=103;ExcessHet=3.9794;FS=2.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=2.44;SOR=0.572;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,51:103:99:1240,0,1334
chr5	35861152	rs11567705	C	G	722.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543e+00;DB;DP=52;ExcessHet=3.0103;FS=1.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.705;SOR=1.148;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:731,0,753
chr5	35871190	rs1494555	G	A	4475.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=83;ExcessHet=3.9794;FS=0.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.10;ReadPosRankSum=-3.790e-01;SOR=0.732;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:768,0,1161
chr5	35874575	rs6897932	C	T	1237.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e+00;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=1.56;SOR=0.730;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,53:105:99:1246,0,1258
chr5	35875593	rs987106	A	T	3651.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=105;ExcessHet=6.9897;FS=2.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.41;ReadPosRankSum=1.75;SOR=0.618;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,47:105:99:1088,0,1388
chr5	35904889	rs1345827	C	A	571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.610e-01;DB;DP=21;ExcessHet=6.9897;FS=1.054;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=-2.480e-01;SOR=0.473;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,5:21:99:99,0,474
chr5	35910419	rs1445899	C	T	1742.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=85;ExcessHet=3.9794;FS=0.555;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=-8.810e-01;SOR=0.640;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,35:85:99:860,0,1422
chr5	35910529	rs1445898	C	T	1771.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.304;DB;DP=76;ExcessHet=3.9794;FS=2.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.43;ReadPosRankSum=0.400;SOR=0.516;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,38:76:99:903,0,913
chr5	35920686	rs11955690	C	T	63.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:71,0,70
chr5	35921069	rs6859892	T	C	14912.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;DB;DP=192;ExcessHet=3.0103;FS=1.650;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-3.380e-01;SOR=0.627;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,192:192:99:5689,575,0
chr5	35921266	rs3734107	G	A	2114.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915e+00;DB;DP=51;ExcessHet=6.9897;FS=2.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=-3.130e-01;SOR=0.921;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,24:51:99:588,0,776
chr5	35954191	rs77931459	G	A	403.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.224e+00;DB;DP=11;ExcessHet=3.9794;FS=6.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=0.525;SOR=0.050;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:186,0,177
chr5	35954615	rs80156976	G	A	982.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=92;ExcessHet=3.0103;FS=1.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-8.460e-01;SOR=0.467;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,39:92:99:991,0,1375
chr5	35955525	rs10472268	C	T	227.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.67;SOR=3.912;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr5	35955682	rs768622	C	G	1472.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=43;ExcessHet=0.4576;FS=3.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.23;ReadPosRankSum=0.029;SOR=2.247;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,41:43:80:1489,80,0
chr5	35956026	rs768621	T	C	602.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.86;SOR=3.126;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:619,45,0
chr5	35957202	rs1478449	A	G	762.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=0.00;SOR=0.927;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:471,33,0
chr5	35962984	rs1070895	A	G	7215.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=93;ExcessHet=3.0103;FS=2.443;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.43;ReadPosRankSum=1.68;SOR=0.881;VQSLOD=6.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2763,278,0
chr5	35967917	rs1374014	G	C	1367.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.74;SOR=5.784;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr5	36036278	rs6451254	A	C	964.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.36;SOR=6.273;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:179,12,0
chr5	36037778	rs2247611	G	A	3367.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=3.430;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1020,84,0
chr5	36039441	rs2453302	A	G	650.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.44;SOR=5.549;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr5	36064642	rs267769	A	T	380.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=4.804;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:397,30,0
chr5	36064673	rs267770	A	G	222.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.26;SOR=3.912;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr5	36111167	rs43189	A	T	801.67	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.840e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=-1.617e+00;SOR=1.061;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr5	36136349	rs267757	A	G	589.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.18;SOR=5.421;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr5	36137620	rs267759	A	G	1173.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=-2.820e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.61;ReadPosRankSum=-1.085e+00;SOR=1.662;VQSLOD=0.304;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:518,48,0
chr5	36142818	rs68098184	CT	C	122.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.800e-02;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.98;ReadPosRankSum=0.037;SOR=0.487;VQSLOD=5.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:71:71,0,312
chr5	36147806	rs10071838	C	T	789.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.35;SOR=1.697;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:806,78,0
chr5	36152742	rs33671	A	G	1209.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.830e-01;DB;DP=9;ExcessHet=3.0103;FS=5.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=0.386;SOR=1.672;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:334,27,0
chr5	36153315	rs140663057	GATATATATATAT	G	585.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=1.15;SOR=3.258;VQSLOD=5.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:16:228,16,0
chr5	36166827	rs34784319	C	CT	1440.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.060e-01;DB;DP=36;ExcessHet=3.9794;FS=0.744;MQ=59.87;MQRankSum=0.00;QD=12.64;ReadPosRankSum=-1.041e+00;SOR=0.578;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,26:36:41:568,0,41
chr5	36168582	rs7736391	T	C	6562.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.125;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=-2.810e-01;SOR=0.704;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2118,201,0
chr5	36168771	rs13190112	T	A	1966.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.274;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.80;ReadPosRankSum=0.220;SOR=0.947;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:583,57,0
chr5	36176874	rs40030	G	A	3609.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.99;DB;DP=34;ExcessHet=3.0103;FS=1.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.65;ReadPosRankSum=0.763;SOR=0.444;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1269,102,0
chr5	36180016	rs200003960	ATT	AT,A	1209.35	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.847;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.16;ReadPosRankSum=0.764;SOR=3.334;VQSLOD=4.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,18,6:25:92:605,138,92,400,0,416
chr5	36180510	rs17279275	A	G	424.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.08;SOR=5.136;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:441,36,0
chr5	36195448	rs11952882	A	G	3254.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.000e-01;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.14;ReadPosRankSum=-9.740e-01;SOR=0.827;VQSLOD=6.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1200,99,0
chr5	36197929	rs11378052	C	CA	201.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.84;SOR=4.174;VQSLOD=5.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
chr5	36201336	rs7705396	C	T	3971.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.27;SOR=3.300;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:942,75,0
chr5	36207050	rs41445147	G	A	357.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=3.258;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:89,9,0
chr5	36207424	rs2303163	G	T	4855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.72;SOR=2.270;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1622,150,0
chr5	36207548	rs34974252	T	TA	164.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.49;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=5.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:114,15,0
chr5	36212217	rs3761974	C	T	230.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.97;SOR=4.174;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr5	36217764	rs111441491	G	GTTAATCA	4478.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.17;SOR=3.083;VQSLOD=6.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,24:24:84:1260,84,0
chr5	36219480	rs6866745	C	T	1374.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.79;SOR=5.943;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:210,18,0
chr5	36226350	rs10512640	G	A	554.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.81;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:164,12,0
chr5	36227340	rs13154462	G	A	551.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.297e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.56;ReadPosRankSum=0.079;SOR=1.721;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr5	36241922	rs62356073	G	A	5428.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.94;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=1.00;SOR=0.649;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2334,249,0
chr5	36241988	rs34888491	G	C	3707.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.42;SOR=2.224;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1168,111,0
chr5	36253937	rs4869473	G	A	12053.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.317;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.94;ReadPosRankSum=0.660;SOR=1.513;VQSLOD=6.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,104:105:99:3522,274,0
chr5	36257864	rs13166148	A	C	4091.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.279e+00;DB;DP=55;ExcessHet=3.0103;FS=3.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=-1.706e+00;SOR=0.431;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1613,164,0
chr5	36257962	rs34865166	TC	T	1885.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.19;SOR=4.849;VQSLOD=6.55;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,19:19:57:769,57,0
chr5	36260976	rs6881086	T	A	5000.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=1.118;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1277,134,0
chr5	36261819	rs1862544	T	C	192.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.02;SOR=3.611;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	36261866	rs1862543	A	T	929.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.84;SOR=6.439;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:233,18,0
chr5	36262317	rs2362978	A	C	270.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=4.407;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:97,9,0
chr5	36268218	rs6869599	A	G	3520.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.52;SOR=2.124;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1115,102,0
chr5	36269219	rs1423224	G	A	534.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=0.976;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:213,18,0
chr5	36269551	rs1035480	G	C	10713.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.27;SOR=1.121;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3187,305,0
chr5	36270915	rs6886098	A	G	163.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=3.258;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr5	36271491	rs200837339	CT	C	1640.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=2.876;VQSLOD=4.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:42:401,42,0
chr5	36301369	rs884692	T	G	3359.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.633e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.23;ReadPosRankSum=-3.390e-01;SOR=0.709;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:87:1|1:36301369_T_G:1305,87,0:36301369
chr5	36301374	rs884693	T	C	2096.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.640e-01;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.84;ReadPosRankSum=-5.380e-01;SOR=0.537;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:96:1|1:36301369_T_G:1420,96,0:36301369
chr5	36301420	rs884694	G	T	5682.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.39;DB;DP=62;ExcessHet=3.0103;FS=3.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.99;ReadPosRankSum=0.196;SOR=0.419;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1993,186,0
chr5	36613053	rs7728680	A	G	1032.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-02;DB;DP=20;ExcessHet=6.9897;FS=8.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.59;ReadPosRankSum=0.356;SOR=0.174;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:346,0,214
chr5	36629529	rs78316512	CT	C	168.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=64;ExcessHet=3.9794;FS=0.676;MQ=59.79;MQRankSum=-8.850e-01;QD=1.32;ReadPosRankSum=0.628;SOR=0.804;VQSLOD=0.284;culprit=QD	GT:AD:DP:GQ:PL	0/1:50,10:64:34:34,0,1114
chr5	36629801	.	G	GA	62.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.79;ReadPosRankSum=-4.090e-01;SOR=1.445;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:12:71:71,0,105
chr5	36676750	rs3051481	ATG	A	130.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=3.258;VQSLOD=6.41;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
chr5	36680125	rs2303716	A	G	569.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310e+00;DB;DP=13;ExcessHet=1.5490;FS=2.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=0.743;SOR=0.307;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:236,0,126
chr5	36683801	rs56038114	T	C	146.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.93;ReadPosRankSum=0.842;SOR=0.941;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,4:7:99:0|1:36683801_T_C:154,0,173:36683801
chr5	36683809	rs11284736	CA	C	363.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=11;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=0.880;SOR=0.941;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,5:11:99:0|1:36683801_T_C:168,0,239:36683801
chr5	36683903	rs56039629	C	T	1534.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.810e-01;DB;DP=65;ExcessHet=3.9794;FS=0.874;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=1.19;SOR=0.854;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,25:65:99:645,0,1283
chr5	36954077	rs62356411	C	T	68.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:77,0,32
chr5	36958085	rs141750225	CAA	C	738.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.551;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=59.50;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.54;ReadPosRankSum=0.102;SOR=1.845;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:13:22:243,0,22
chr5	37003501	rs62654860	A	G	894.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-02;DB;DP=57;ExcessHet=3.0103;FS=3.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=0.463;SOR=0.301;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,36:57:99:903,0,460
chr5	37007629	rs159753	T	C	1499.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.20;DB;DP=23;ExcessHet=1.5490;FS=7.370;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=-1.850e-01;SOR=2.326;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:425,0,282
chr5	37019354	rs300060	G	A	1245.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.820e-01;DB;DP=15;ExcessHet=1.5490;FS=5.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=-1.710e-01;SOR=3.383;VQSLOD=17.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:330,0,177
chr5	37024494	rs13181330	T	C	179.45	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=3.611;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:196,15,0
chr5	37024519	rs3100685	A	T	1008.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=6.518;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:279,21,0
chr5	37045841	rs301859	A	G	670.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.68;ReadPosRankSum=0.431;SOR=3.500;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:62:154,0,62
chr5	37061261	rs188541	A	G	416.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.420e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.847;SOR=0.481;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:143,0,248
chr5	37125560	rs3832339	CAGATA	C	853.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=59.75;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=-2.530e-01;SOR=3.912;VQSLOD=4.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:10:99:330,0,114
chr5	37158123	rs10512664	A	G	173.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=1.38;SOR=0.495;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:74,0,70
chr5	37179341	rs6860727	G	A	653.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.70;ReadPosRankSum=0.00;SOR=3.716;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:67,0,76
chr5	37199052	rs72534652	A	AG	379.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=8.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.23;ReadPosRankSum=1.04;SOR=4.977;VQSLOD=1.52;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:5:60:97,0,60
chr5	37206621	rs12658479	T	C	127.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.00;SOR=0.269;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:75,0,69
chr5	37242908	rs34793055	T	TGC	349.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.28;ReadPosRankSum=0.00;SOR=0.346;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:70:204,0,70
chr5	37242941	rs376022376	TA	T	227.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.130;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.38;ReadPosRankSum=0.362;SOR=0.385;VQSLOD=5.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,3:17:23:23,0,292
chr5	37247700	rs6876576	G	A	7939.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=32.67;SOR=1.514;VQSLOD=3.77;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2598,249,0
chr5	37247900	rs11320255	AT	A	359.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-02;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.83;MQRankSum=0.00;QD=7.48;ReadPosRankSum=-4.620e-01;SOR=0.909;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,2:11:18:18,0,145
chr5	37294473	rs1045908	T	C	2310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.91;DB;DP=66;ExcessHet=3.9794;FS=1.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=0.968;SOR=0.896;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,34:66:99:858,0,688
chr5	37307299	.	CA	C	186.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031e+00;DP=17;ExcessHet=6.9897;FS=2.141;MQ=59.98;MQRankSum=0.00;QD=3.74;ReadPosRankSum=-4.780e-01;SOR=0.231;VQSLOD=5.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,5:17:73:73,0,214
chr5	37309371	rs3835198	TAGA	T	2202.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.468;DB;DP=44;ExcessHet=3.9794;FS=0.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.929;SOR=0.849;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,21:44:99:773,0,1085
chr5	37318295	rs217797	G	T	555.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.148e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=1.08;SOR=0.784;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:120,0,357
chr5	37325870	.	CAA	C	128.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.30;ReadPosRankSum=0.00;SOR=2.448;VQSLOD=4.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:7:15:92,0,15
chr5	37331985	rs13170025	G	T	685.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.484e+00;DB;DP=24;ExcessHet=3.9794;FS=8.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=-2.340e-01;SOR=0.171;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:207,0,437
chr5	37341352	rs13172306	T	C	1625.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750e-01;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=1.53;SOR=0.642;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,30:72:99:729,0,1092
chr5	37364443	rs217852	C	T	8026.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.26;SOR=0.722;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1851,192,0
chr5	37379855	rs35146715	T	TC	1782.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=56.29;QD=33.33;SOR=7.784;VQSLOD=5.77;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,11:11:33:412,33,0
chr5	37392279	rs11335326	GT	G	303.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=16;ExcessHet=6.9897;FS=8.149;MQ=60.00;MQRankSum=0.00;QD=5.07;ReadPosRankSum=0.312;SOR=0.125;VQSLOD=3.55;culprit=FS	GT:AD:DP:GQ:PL	0/1:13,3:16:26:26,0,241
chr5	37396287	rs34642822	G	GT	275.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.53;SOR=4.804;VQSLOD=6.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr5	37437848	rs3776597	T	C	703.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.60;ReadPosRankSum=0.475;SOR=2.400;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:299,21,0
chr5	37443648	rs58999463	T	G	388.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.046;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=58.44;MQRankSum=0.875;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=0.908;SOR=1.244;VQSLOD=0.345;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:126,0,226
chr5	37605048	rs1400853	A	G	1559.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.00;ReadPosRankSum=0.624;SOR=0.693;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:277,0,128
chr5	37605122	rs150300664	CT	C	1935.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=28;ExcessHet=1.5490;FS=2.388;MQ=60.00;MQRankSum=0.00;QD=21.75;ReadPosRankSum=1.04;SOR=1.179;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,13:28:99:285,0,339
chr5	37605537	rs10941350	A	G	861.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.693;DB;DP=16;ExcessHet=1.5490;FS=2.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=1.98;SOR=1.981;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:99:328,0,119
chr5	37687714	rs4516882	C	T	32.23	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=1.609;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:42,3,0
chr5	37687843	rs35188065	AT	A	753.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740e-01;DB;DP=31;ExcessHet=3.9794;FS=12.792;MQ=59.92;MQRankSum=0.00;QD=10.91;ReadPosRankSum=-1.950e-01;SOR=0.079;VQSLOD=0.504;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,16:31:99:326,0,283
chr5	37688010	rs4371784	A	G	2417.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.730e-01;DB;DP=107;ExcessHet=3.9794;FS=1.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=0.633;SOR=0.617;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,54:107:99:1281,0,1316
chr5	37688094	rs6451337	C	T	1652.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233e+00;DB;DP=66;ExcessHet=3.9794;FS=10.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=-2.400e-01;SOR=0.228;VQSLOD=19.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:595,0,1067
chr5	37724932	rs3074547	CATT	C	2986.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=33;ExcessHet=3.9794;FS=2.007;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=1.81;SOR=0.468;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:33:99:576,0,711
chr5	37724990	rs7444391	G	A	5337.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=1.361;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1430,144,0
chr5	37752415	rs1549252	A	G	1246.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.72;SOR=5.728;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:198,18,0
chr5	37752460	rs1549251	T	C	2438.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.35;SOR=4.499;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:44:526,44,0
chr5	37752497	rs2973079	A	G	3755.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.30;SOR=2.507;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:854,81,0
chr5	38350440	.	T	C	35.86	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=17.93;SOR=0.693;VQSLOD=13.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	38435130	rs2956598	T	G	370.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.744e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=0.277;SOR=0.324;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:115,0,251
chr5	38482504	rs2256595	C	T	101.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=2.833;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr5	38496779	rs3729741	C	T	370.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=4.615;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:387,27,0
chr5	38504303	rs16903989	A	T	415.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.59;SOR=2.670;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:432,36,0
chr5	38510481	rs34968906	AC	A	1617.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.91;DB;DP=28;ExcessHet=1.5490;FS=8.754;MQ=60.00;MQRankSum=0.00;QD=21.57;ReadPosRankSum=2.57;SOR=0.150;VQSLOD=2.68;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,28:28:84:872,84,0
chr5	38512154	rs1037033	T	C	848.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.08;SOR=3.352;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:865,69,0
chr5	38528969	rs71604901	CACACACACACAG	C	1326.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.85;SOR=1.839;VQSLOD=4.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,31:31:94:1343,94,0
chr5	38530485	rs11293177	CA	C	714.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.79;SOR=4.977;VQSLOD=6.76;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,9:9:27:275,27,0
chr5	38820752	rs143325273	TAAAGA	T	2245.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=55;ExcessHet=3.9794;FS=4.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=-3.850e-01;SOR=1.086;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,20:55:99:735,0,1824
chr5	38820807	rs62354662	T	C	1464.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=25;ExcessHet=6.9897;FS=1.865;MQ=60.00;MQRankSum=0.00;QD=13.20;ReadPosRankSum=0.366;SOR=0.959;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,9:25:99:247,0,411
chr5	38821790	rs148551574	T	C	53.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=-1.036e+00;SOR=1.609;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,72
chr5	38822029	rs111307794	G	A	1176.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.055e+00;DB;DP=35;ExcessHet=3.9794;FS=0.811;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.984;SOR=0.578;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,15:35:99:331,0,535
chr5	38822040	rs413278	A	G	4452.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.79;SOR=1.046;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1276,105,0
chr5	38823254	rs369886	C	T	10040.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.989;DB;DP=64;ExcessHet=3.0103;FS=3.254;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=1.55;SOR=0.413;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2242,192,0
chr5	38823306	rs62354666	A	G	4187.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.728e+00;DB;DP=67;ExcessHet=6.9897;FS=2.774;MQ=59.91;MQRankSum=-9.770e-01;QD=16.62;ReadPosRankSum=-5.760e-01;SOR=0.532;VQSLOD=0.818;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,28:67:99:0|1:38823306_A_G:1002,0,1462:38823306
chr5	38823344	rs12651771	A	G	3331.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e-01;DB;DP=64;ExcessHet=6.9897;FS=0.559;MQ=59.75;MQRankSum=0.00;QD=19.25;ReadPosRankSum=0.966;SOR=0.768;VQSLOD=4.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,30:64:99:0|1:38823306_A_G:1163,0,1413:38823306
chr5	38823345	rs62354667	C	T	2681.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=65;ExcessHet=3.9794;FS=0.000;MQ=59.87;MQRankSum=0.00;QD=16.35;ReadPosRankSum=1.02;SOR=0.651;VQSLOD=4.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,31:65:99:0|1:38823306_A_G:1145,0,1377:38823306
chr5	38823358	rs581668	C	A	2329.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.310e-01;DB;DP=65;ExcessHet=4.7712;FS=4.601;MQ=59.71;MQRankSum=0.201;NEGATIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=0.039;SOR=0.977;VQSLOD=-1.081e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,34:65:99:799,0,1194
chr5	38876573	rs357271	T	C	2750.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.68;SOR=6.091;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1018,72,0
chr5	38876584	rs71621888	C	T	1573.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.660e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.86;ReadPosRankSum=0.869;SOR=0.904;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:208,0,337
chr5	38881460	rs617938	G	T	499.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=5.136;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr5	38881538	rs2278325	C	T	55.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.884e+00;DB;DP=9;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.14;ReadPosRankSum=0.480;SOR=0.045;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:64:64,0,224
chr5	38904363	rs1239334	C	T	6362.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DB;DP=131;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=-8.920e-01;SOR=0.676;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,70:131:99:1716,0,1442
chr5	38917574	rs357260	G	A	1525.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=1.70;SOR=0.693;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:325,0,218
chr5	38923171	rs357293	T	C	1120.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=-2.990e-01;SOR=0.627;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:90:282,0,90
chr5	38931919	rs357277	G	A	1083.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294e+00;DB;DP=25;ExcessHet=6.9897;FS=2.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-7.580e-01;SOR=0.474;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:207,0,523
chr5	38932466	rs357278	A	C	1795.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-02;DB;DP=45;ExcessHet=6.9897;FS=1.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-2.070e-01;SOR=0.516;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,19:45:99:544,0,714
chr5	38933645	rs1051977	G	A	892.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.053;DB;DP=54;ExcessHet=3.0103;FS=2.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.52;ReadPosRankSum=0.923;SOR=1.267;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,30:54:99:901,0,625
chr5	38933749	rs1239344	C	T	284.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.598;SOR=0.264;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:94:105,0,94
chr5	38942554	rs200385182	A	AT	285.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.94;ReadPosRankSum=0.181;SOR=1.022;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:9:47:47,0,93
chr5	38950776	rs2115949	G	A	8656.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=1.513;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2335,219,0
chr5	38952655	rs10707065	GA	G	775.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.70;SOR=6.736;VQSLOD=6.78;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:226,24,0
chr5	38953427	rs2115948	T	C	1272.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=0.880;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:114,9,0
chr5	38953447	rs2115947	T	A	1312.04	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.53;SOR=1.329;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:169,15,0
chr5	38953665	rs33912683	G	GA	1642.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=2.644;VQSLOD=5.94;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:342,36,0
chr5	38954994	rs9292726	T	C	8456.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=1.786;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2088,188,0
chr5	38955796	rs2043112	G	A	3735.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.150e-01;DB;DP=59;ExcessHet=6.9897;FS=2.356;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.94;ReadPosRankSum=0.445;SOR=0.886;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,30:59:99:874,0,655
chr5	38958750	rs6868087	A	G	2490.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=38;ExcessHet=6.9897;FS=0.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=0.220;SOR=0.631;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,26:38:99:592,0,325
chr5	38958968	rs6868591	A	C	4453.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=35;ExcessHet=3.0103;FS=6.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.79;ReadPosRankSum=1.64;SOR=2.676;VQSLOD=18.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,35:35:99:1|1:38958956_TA_T:1099,103,0:38958956
chr5	38959794	rs2115946	T	C	3603.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=4.659;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1125,101,0
chr5	38960325	rs11405947	T	TA	519.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.66;SOR=4.047;VQSLOD=6.29;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr5	38962543	rs7729745	A	G	5552.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=1.325;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1426,134,0
chr5	38971865	rs13165709	A	G	678.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.74;DB;DP=6;ExcessHet=3.9794;FS=2.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=0.243;SOR=0.166;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:24:161,0,24
chr5	38971909	rs185440036	T	C	154.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.651e+00;DB;DP=21;ExcessHet=3.0103;FS=1.999;MQ=60.00;MQRankSum=0.00;QD=7.35;ReadPosRankSum=0.073;SOR=0.260;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,8:21:99:163,0,367
chr5	38971912	rs7732615	T	A	2442.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.01;SOR=1.949;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:791,66,0
chr5	38975458	rs13168867	T	C	598.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.090e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=0.707;SOR=0.402;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:255,0,172
chr5	38975955	rs10473126	C	T	402.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.57;SOR=4.804;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr5	38990957	.	T	TATGAGATATATGATATATATATGATAG	1296.57	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.78;SOR=4.977;VQSLOD=4.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:18:249,18,0
chr5	39021369	rs13177690	G	A	1099.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=16;ExcessHet=6.9897;FS=6.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=0.808;SOR=2.476;VQSLOD=19.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:153,0,361
chr5	39021493	rs13177882	G	A	340.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=-5.660e-01;SOR=1.473;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:68,0,34
chr5	39074296	rs2303808	G	C	17328.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.484e+00;DB;DP=473;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.74;ReadPosRankSum=-2.870e-01;SOR=0.734;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:238,235:473:99:5530,0,5997
chr5	39074696	rs6869095	C	T	576.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=0.935;SOR=0.512;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:211,0,177
chr5	39107353	rs404122	T	A	2302.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.090e-01;DB;DP=20;ExcessHet=3.0103;FS=7.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=-1.654e+00;SOR=4.548;VQSLOD=12.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:749,60,0
chr5	39108309	rs377022	A	G	6958.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.20;SOR=0.941;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1565,147,0
chr5	39108322	rs430630	A	G	6424.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.61;SOR=0.995;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1368,138,0
chr5	39119222	rs427829	T	G	949.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.41;SOR=6.518;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:234,21,0
chr5	39119561	rs394930	T	C	458.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.94;SOR=5.283;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr5	39119723	rs379707	C	A	1333.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DB;DP=32;ExcessHet=6.9897;FS=0.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-9.150e-01;SOR=0.819;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,24:32:99:534,0,132
chr5	39124508	rs2303807	C	T	2848.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.387e+00;DB;DP=70;ExcessHet=6.9897;FS=0.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-1.116e+00;SOR=0.646;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,25:70:99:498,0,1150
chr5	39124593	rs2303806	A	T	1541.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=28;ExcessHet=6.9897;FS=2.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=-9.970e-01;SOR=1.148;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:283,0,519
chr5	39127960	rs56166211	G	C	2342.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=58;ExcessHet=6.9897;FS=1.168;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.095;SOR=0.591;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,24:58:99:640,0,875
chr5	39134169	rs68032871	T	C	732.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=1.94;SOR=1.609;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:291,21,0
chr5	39134295	rs4957318	C	T	2356.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=40;ExcessHet=6.9897;FS=0.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=0.015;SOR=0.635;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,29:40:99:764,0,199
chr5	39139176	rs10059957	A	G	849.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.519e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.71;ReadPosRankSum=-4.410e-01;SOR=0.818;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:363,0,117
chr5	39141240	rs3188386	G	A	2716.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.656e+00;DB;DP=78;ExcessHet=6.9897;FS=3.051;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-3.100e-02;SOR=0.498;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,30:78:99:805,0,1178
chr5	39153881	rs7717006	G	A	345.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.93;SOR=3.056;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr5	39285139	rs261738	T	A	827.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.52;SOR=3.841;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:257,27,0
chr5	39342308	rs476569	C	T	4819.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.111;DB;DP=90;ExcessHet=3.9794;FS=1.604;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=0.474;SOR=0.813;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,36:90:99:793,0,1502
chr5	39364339	rs700231	T	C	1065.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.87;DB;DP=34;ExcessHet=3.9794;FS=3.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.00;ReadPosRankSum=0.152;SOR=1.420;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:370,0,606
chr5	39364358	rs700232	G	A	1367.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=49;ExcessHet=3.9794;FS=0.960;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.715;SOR=0.524;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,16:49:99:343,0,962
chr5	39364554	rs700233	G	A	2035.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=61;ExcessHet=3.9794;FS=2.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-4.910e-01;SOR=0.476;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,30:61:99:828,0,880
chr5	39375082	rs2686162	C	T	1636.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188e+00;DB;DP=37;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=0.368;SOR=0.616;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:351,0,565
chr5	39377418	rs2738238	G	A	1741.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=34;ExcessHet=1.5490;FS=1.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=-3.500e-02;SOR=1.085;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,14:34:99:393,0,548
chr5	39381357	rs835223	C	T	264.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=59.49;MQRankSum=0.792;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=0.908;SOR=0.512;VQSLOD=1.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:129,0,253
chr5	39390061	rs2855512	C	A	4861.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.77;SOR=1.108;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1461,147,0
chr5	39390121	rs34356831	A	AT	388.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.38;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,17:27:99:397,0,201
chr5	39393625	rs2071037	G	A	758.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=5.994;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr5	40716153	rs10737963	C	A	2164.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.102;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.36;ReadPosRankSum=0.00;SOR=1.609;VQSLOD=6.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:208,0,255
chr5	40728383	.	C	CAAAAAAAAAAAAA	613.84	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=56.82;QD=32.35;SOR=3.258;VQSLOD=4.74;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:18:238,18,0
chr5	40746885	rs3805497	A	T	2668.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.530e-01;DB;DP=47;ExcessHet=1.5490;FS=2.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.91;ReadPosRankSum=-1.252e+00;SOR=1.176;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:678,0,535
chr5	40767458	rs1002423	C	T	842.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.467e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.72;ReadPosRankSum=-4.350e-01;SOR=3.528;VQSLOD=17.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,9:12:86:323,0,86
chr5	40767973	rs61424144	G	GT	756.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.88;SOR=6.358;VQSLOD=6.87;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:101,9,0
chr5	40772071	rs837103	C	G	2707.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.37;SOR=5.640;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:491,39,0
chr5	40775297	rs3792822	C	T	429.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=10;ExcessHet=3.9794;FS=1.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.66;ReadPosRankSum=1.12;SOR=0.330;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:182,0,179
chr5	40777531	rs144157386	T	TTA	4429.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365e+00;DB;DP=67;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.56;ReadPosRankSum=-1.960e-01;SOR=0.804;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,37:67:99:1497,0,1292
chr5	40798622	rs7711806	C	T	39.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.59;SOR=0.693;VQSLOD=15.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	40832904	rs41271049	T	C	843.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=0.114;SOR=0.892;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:403,0,300
chr5	40834864	rs3816959	T	C	1987.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=20;ExcessHet=3.9794;FS=1.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.16;ReadPosRankSum=-4.040e-01;SOR=0.495;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:310,0,278
chr5	40835088	rs2270625	C	G	2814.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.85;DB;DP=32;ExcessHet=3.9794;FS=1.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=-1.890e-01;SOR=1.270;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:556,0,574
chr5	40835566	rs34976456	TAC	T	2156.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=2.15;SOR=2.165;VQSLOD=6.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,11:19:99:438,0,322
chr5	40841741	rs10512747	C	T	1544.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.523e+00;DB;DP=43;ExcessHet=6.9897;FS=4.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=0.052;SOR=0.392;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:363,0,769
chr5	40852451	rs188934	C	G	8028.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=1.007;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2360,227,0
chr5	40947346	rs8180525	T	C	336.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=3.056;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:135,12,0
chr5	40949997	rs1450656	C	T	4063.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.711;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.339;SOR=0.702;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2188,219,0
chr5	40950344	rs142286489	CTCTG	C	537.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.91;ReadPosRankSum=-1.534e+00;SOR=3.912;VQSLOD=2.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	40955561	rs1063499	G	C	7768.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.650e-01;DB;DP=135;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.381;SOR=0.668;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4068,405,0
chr5	40958027	rs2652323	G	A	1302.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.20;SOR=7.112;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
chr5	40964682	rs2455304	C	T	346.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.19;SOR=4.407;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:40964682_C_T:135,9,0:40964682
chr5	40964684	rs2443037	A	G	346.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.43;SOR=4.407;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:40964682_C_T:135,9,0:40964682
chr5	40964852	rs13157656	A	C	1829.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=51;ExcessHet=3.9794;FS=5.088;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=0.420;SOR=0.346;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,34:51:99:910,0,402
chr5	40964885	rs60714178	A	T	2019.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.45;DB;DP=64;ExcessHet=3.9794;FS=2.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.478;SOR=0.933;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,25:64:99:529,0,1007
chr5	40972017	rs11747673	A	G	465.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.02;SOR=4.977;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr5	40972111	rs10805655	C	T	6957.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=1.816;VQSLOD=19.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1588,156,0
chr5	40972371	rs2305313	A	G	631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.070e-01;DB;DP=11;ExcessHet=3.9794;FS=5.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=1.75;SOR=0.204;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:46:46,0,312
chr5	40976669	rs1450660	A	G	963.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=6.358;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:298,21,0
chr5	40979662	rs6860438	G	T	69.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.64;SOR=2.833;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:35,3,0
chr5	40980086	rs1450664	T	C	2317.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.65;SOR=0.779;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1630,156,0
chr5	40981375	rs3749519	G	A	10026.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.34;SOR=2.755;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,81:81:99:1|1:40981375_G_A:3634,249,0:40981375
chr5	40981380	rs7731615	T	C	7477.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.02;SOR=2.740;VQSLOD=20.55;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,83:83:99:1|1:40981375_G_A:3644,249,0:40981375
chr5	40981689	rs1061429	C	A	7677.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.770e+00;DB;DP=125;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.67;ReadPosRankSum=-8.590e-01;SOR=0.710;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,124:125:99:4007,329,0
chr5	40997996	rs2271707	G	A	1085.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.58;ReadPosRankSum=0.085;SOR=0.976;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:447,0,201
chr5	40998196	rs704040	T	C	3098.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=44;ExcessHet=1.5490;FS=0.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.04;ReadPosRankSum=-1.410e+00;SOR=0.859;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:671,0,561
chr5	40998851	rs2329435	G	A	4764.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.380e-01;DB;DP=41;ExcessHet=3.0103;FS=1.728;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.54;ReadPosRankSum=-2.093e+00;SOR=0.942;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1205,123,0
chr5	41000152	rs1530812	G	A	2127.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.310e-01;DB;DP=20;ExcessHet=3.0103;FS=3.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.76;ReadPosRankSum=1.13;SOR=1.597;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:679,60,0
chr5	41000343	rs1001420	G	A	4891.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.274;DB;DP=75;ExcessHet=3.9794;FS=2.429;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.64;ReadPosRankSum=1.43;SOR=0.722;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,35:75:99:869,0,1015
chr5	41001023	rs2167229	G	A	1007.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.523e+00;DB;DP=15;ExcessHet=1.5490;FS=3.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.63;ReadPosRankSum=-5.140e-01;SOR=2.303;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:248,0,177
chr5	41004396	rs7712140	G	T	6021.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.84;DB;DP=72;ExcessHet=3.0103;FS=1.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.09;ReadPosRankSum=-3.850e-01;SOR=0.868;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,71:72:99:2176,204,0
chr5	41004807	rs2305314	C	T	2439.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650e-01;DB;DP=56;ExcessHet=6.9897;FS=6.102;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.12;ReadPosRankSum=0.483;SOR=0.799;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,31:56:99:766,0,640
chr5	41005791	rs10941529	T	C	2794.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=77;ExcessHet=6.9897;FS=0.949;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=-5.220e-01;SOR=0.778;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,35:77:99:838,0,1011
chr5	41008650	rs2271705	A	G	1623.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.306e+00;DB;DP=22;ExcessHet=3.0103;FS=7.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=1.19;SOR=4.493;VQSLOD=13.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:379,0,305
chr5	41008780	rs2271704	A	G	7640.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DB;DP=114;ExcessHet=3.0103;FS=2.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=-7.110e-01;SOR=0.889;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,50:114:99:1209,0,1602
chr5	41009242	rs1450658	C	T	1612.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=-1.437e+00;SOR=0.709;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:131,0,166
chr5	41009282	rs10061334	G	A	873.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650e-01;DB;DP=17;ExcessHet=6.9897;FS=5.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=0.929;SOR=1.319;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:204,0,271
chr5	41009899	rs1878290	A	G	1020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.839;DB;DP=13;ExcessHet=6.9897;FS=13.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=0.141;SOR=0.026;VQSLOD=15.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:175,0,302
chr5	41010258	rs77372186	C	T	271.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.410;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:280,0,247
chr5	41015303	rs1450659	C	G	52.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=-1.465e+00;SOR=0.223;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:61:61,0,175
chr5	41018452	rs10054110	A	T	3585.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.63;DB;DP=69;ExcessHet=6.9897;FS=1.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.12;ReadPosRankSum=-1.930e-01;SOR=0.786;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,38:69:99:948,0,714
chr5	41018677	rs6862217	T	C	1595.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;DB;DP=11;ExcessHet=3.0103;FS=1.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.96;ReadPosRankSum=1.65;SOR=0.830;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:177,0,158
chr5	41032998	rs325831	A	G	2237.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.310e-01;DB;DP=33;ExcessHet=3.9794;FS=1.181;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=0.397;SOR=0.540;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1095,99,0
chr5	41033112	rs4957367	G	A	2532.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.870e-01;DB;DP=38;ExcessHet=3.9794;FS=2.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=-9.400e-01;SOR=0.464;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,17:38:99:457,0,598
chr5	41033931	.	C	CTATT	1477.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DP=21;ExcessHet=3.9794;FS=3.471;MQ=59.73;MQRankSum=0.00;QD=23.82;ReadPosRankSum=2.26;SOR=0.249;VQSLOD=4.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:21:99:276,0,408
chr5	41033992	rs67027762	G	T	1327.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.490e+00;DB;DP=50;ExcessHet=3.9794;FS=7.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=0.996;SOR=0.243;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,24:50:99:587,0,713
chr5	41034181	rs325833	A	G	1803.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.476;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.80;ReadPosRankSum=-2.400e-01;SOR=1.362;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:767,60,0
chr5	41038723	rs325848	G	T	107.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.32;SOR=2.833;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr5	41039000	rs325849	A	G	2600.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.588e+00;DB;DP=32;ExcessHet=3.0103;FS=0.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.23;ReadPosRankSum=-4.140e-01;SOR=0.828;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:941,96,0
chr5	41039430	rs7700901	G	C	456.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=1.31;SOR=0.507;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:63:189,0,63
chr5	41042284	rs325854	G	T	3498.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.261e+00;DB;DP=35;ExcessHet=3.0103;FS=1.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.301;SOR=0.575;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1133,105,0
chr5	41045730	rs11297360	CT	C	3008.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.53;DB;DP=41;ExcessHet=3.0103;FS=1.330;MQ=59.97;MQRankSum=-1.045e+00;POSITIVE_TRAIN_SITE;QD=21.65;ReadPosRankSum=0.590;SOR=0.495;VQSLOD=1.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1156,123,0
chr5	41045768	rs325860	G	A	5991.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.743e+00;DB;DP=67;ExcessHet=3.0103;FS=8.867;MQ=59.98;MQRankSum=-1.068e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=0.448;SOR=0.270;VQSLOD=0.231;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2214,200,0
chr5	41045835	rs6864243	C	G	3402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.592;DB;DP=114;ExcessHet=3.9794;FS=3.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=1.23;SOR=0.938;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,55:114:99:1497,0,1535
chr5	41048388	rs325861	T	G	415.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.05;ReadPosRankSum=-9.300e-02;SOR=0.610;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:424,0,272
chr5	41048770	rs325862	A	G	509.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=5.283;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:153,12,0
chr5	41049389	rs325863	T	C	10229.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.270e+00;DB;DP=74;ExcessHet=3.0103;FS=1.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=0.439;SOR=0.542;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,74:74:99:1|1:41049389_T_C:3231,223,0:41049389
chr5	41049397	rs325864	C	T	10243.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.082;DB;DP=73;ExcessHet=3.0103;FS=0.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=0.721;SOR=0.777;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,73:73:99:1|1:41049389_T_C:3217,223,0:41049389
chr5	41050999	rs325866	C	T	2572.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=-1.027e+00;SOR=0.806;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:74:773,74,0
chr5	41054934	rs325874	A	G	3088.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350e-01;DB;DP=73;ExcessHet=6.9897;FS=12.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.46;ReadPosRankSum=0.648;SOR=0.402;VQSLOD=16.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,36:73:99:916,0,863
chr5	41055589	rs325876	C	T	255.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.400e-02;DB;DP=2;ExcessHet=3.0103;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.22;ReadPosRankSum=0.431;SOR=2.833;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	41056998	rs648563	A	G	323.09	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.260e-01;DB;DP=3;ExcessHet=3.0103;FS=5.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.37;ReadPosRankSum=-1.645e+00;SOR=3.611;VQSLOD=15.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr5	41057562	rs618334	T	C	2204.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.99;DB;DP=36;ExcessHet=3.9794;FS=1.023;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.97;ReadPosRankSum=1.10;SOR=0.943;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1244,107,0
chr5	41061716	rs865093	A	G	6422.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.160e-01;DB;DP=107;ExcessHet=3.9794;FS=7.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=1.44;SOR=1.026;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3218,321,0
chr5	41061871	rs587412	T	C	2861.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=1.931;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2878,282,0
chr5	41069734	rs10512757	C	T	209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.611;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=1.97;SOR=0.527;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:218,0,535
chr5	41069852	rs13174484	T	C	408.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.432e+00;DB;DP=63;ExcessHet=3.0103;FS=2.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=0.123;SOR=1.055;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,22:63:99:417,0,1038
chr5	41069952	rs147291567	CCTCT	C	196.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.900e-02;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.08;ReadPosRankSum=-8.630e-01;SOR=0.368;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:205,0,441
chr5	41070840	rs1423391	C	T	1263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=1.70;SOR=0.718;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,50:109:99:1272,0,1550
chr5	41154150	rs4957374	A	C	3648.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=37;ExcessHet=3.0103;FS=3.486;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.73;ReadPosRankSum=-1.354e+00;SOR=1.160;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:603,0,502
chr5	41158671	rs10075985	T	C	1937.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.761e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.86;MQRankSum=0.623;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=-5.600e-02;SOR=1.264;VQSLOD=1.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:218,0,277
chr5	41158863	rs6866352	G	A	4680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.06;SOR=1.267;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1473,138,0
chr5	41199959	rs1801033	G	T	421.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=1.72;SOR=0.551;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:430,0,587
chr5	41381901	rs35812696	T	TC	5478.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=1.316;VQSLOD=6.09;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1848,177,0
chr5	41382681	rs319013	G	T	4074.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.005e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.67;ReadPosRankSum=1.01;SOR=0.867;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,28:29:4:1|1:41382681_G_T:1129,4,0:41382681
chr5	41382691	rs545358	C	A	4599.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.631e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.71;ReadPosRankSum=1.74;SOR=0.707;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,23:24:8:0|1:41382681_G_T:974,0,8:41382681
chr5	41510895	rs138346285	C	T	98.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.41;ReadPosRankSum=1.65;SOR=0.693;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,101
chr5	41739811	rs11425534	C	CA	232.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=1.38;SOR=1.179;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:105,12,0
chr5	41805525	.	TA	T	317.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117e+00;DP=21;ExcessHet=6.9897;FS=2.825;MQ=60.00;MQRankSum=0.00;QD=5.05;ReadPosRankSum=-1.120e-01;SOR=0.297;VQSLOD=5.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,7:21:99:110,0,265
chr5	41914558	rs145690846	CAAACA	C	791.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=59.72;QD=31.17;SOR=5.994;VQSLOD=5.35;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:22:316,22,0
chr5	42647676	.	CA	C	300.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.190e-01;DP=37;ExcessHet=6.9897;FS=9.822;MQ=60.00;MQRankSum=0.00;QD=3.54;ReadPosRankSum=0.590;SOR=0.187;VQSLOD=2.46;culprit=FS	GT:AD:DP:GQ:PL	0/1:19,10:37:99:130,0,443
chr5	42700044	rs6179	A	G	5444.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.356e+00;DB;DP=69;ExcessHet=3.0103;FS=0.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.68;ReadPosRankSum=1.52;SOR=0.582;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2114,207,0
chr5	42713472	rs33972388	TG	T	3881.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.884;DB;DP=75;ExcessHet=6.9897;FS=3.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=0.069;SOR=0.984;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,36:75:99:1230,0,1346
chr5	42715499	rs2910878	A	G	709.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=-8.250e-01;SOR=2.124;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:301,21,0
chr5	42718335	rs76362844	G	A	1710.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.03;SOR=4.712;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:326,24,0
chr5	42718422	rs4866949	T	C	339.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:59:59,0,68
chr5	42718427	rs34451841	G	GTT	144.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.71;ReadPosRankSum=0.00;SOR=0.269;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr5	42719239	rs6180	A	C	4100.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=80;ExcessHet=6.9897;FS=0.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.751;SOR=0.730;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,39:80:99:1020,0,1150
chr5	42762420	rs2972783	T	C	394.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.231e+00;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=1.03;SOR=0.560;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,71
chr5	42769632	rs12055087	C	A	1144.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.270e-01;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=-9.310e-01;SOR=0.789;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,8:23:99:187,0,426
chr5	42769647	rs12055266	T	C	976.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=31;ExcessHet=3.9794;FS=3.142;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=-2.240e-01;SOR=1.105;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,10:31:99:212,0,526
chr5	42769844	rs1109882	G	T	4440.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.69;SOR=1.926;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1054,96,0
chr5	42779404	rs56273800	C	G	270.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.55;ReadPosRankSum=1.15;SOR=1.022;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr5	42779686	rs11427149	G	GA	3989.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.52;ReadPosRankSum=-2.148e+00;SOR=1.345;VQSLOD=6.50;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1079,116,0
chr5	42779736	rs1423656	T	G	1268.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=23;ExcessHet=6.9897;FS=2.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-3.100e-02;SOR=1.073;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:337,0,295
chr5	42799719	rs4041462	T	TTTA	2443.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.590e-01;DB;DP=27;ExcessHet=6.9897;FS=4.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=-5.220e-01;SOR=0.363;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,13:27:99:504,0,652
chr5	42800055	rs28919927	T	TA	207.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.75;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.87;ReadPosRankSum=-1.180e+00;SOR=1.270;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:71,6,0
chr5	42800808	rs7579	C	T	1656.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.560e-01;DB;DP=28;ExcessHet=6.9897;FS=2.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=1.10;SOR=0.411;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:230,0,516
chr5	42804983	rs4143864	C	A	1281.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160e+00;DB;DP=22;ExcessHet=6.9897;FS=3.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=0.239;SOR=1.309;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:372,0,208
chr5	42810707	rs12516157	T	G	327.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.652;SOR=0.404;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:88:88,0,189
chr5	43066774	rs316408	T	C	4261.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.930e-01;DB;DP=85;ExcessHet=3.9794;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.53;ReadPosRankSum=1.19;SOR=0.834;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,46:85:99:1163,0,961
chr5	43120098	rs511340	A	G	1476.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-1.040e-01;SOR=0.619;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,31:49:99:846,0,372
chr5	43122348	rs60096743	CTT	C,CT	223.86	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=59.65;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.65;ReadPosRankSum=-6.190e-01;SOR=1.609;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,1:6:3:133,18,3,79,0,63
chr5	43161337	rs903391	A	G	475.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DB;DP=15;ExcessHet=3.9794;FS=1.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=1.81;SOR=0.461;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,12:15:46:298,0,46
chr5	43161351	rs71627581	G	A	66.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.01;ReadPosRankSum=0.118;SOR=0.663;VQSLOD=21.94;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:22:75:75,0,449
chr5	43245922	rs13176855	C	T	4484.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=67;ExcessHet=3.9794;FS=0.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=2.39;SOR=0.801;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,33:67:99:865,0,821
chr5	43492265	rs6876588	T	C	3319.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.55;SOR=2.595;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:960,95,0
chr5	43492978	rs10039298	G	A	5895.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=1.190;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1716,180,0
chr5	43493592	rs7732089	T	C	2140.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.98;SOR=3.021;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:534,51,0
chr5	43493922	rs34007811	G	C	757.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.090e-01;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=-5.110e-01;SOR=1.781;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:478,33,0
chr5	43496198	rs10068354	G	A	3591.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=50.12;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=30.00;SOR=0.941;VQSLOD=-5.265e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:834,71,0
chr5	43496228	rs113508677	A	ACAGT	3914.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=43.98;QD=34.14;SOR=1.039;VQSLOD=3.50;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,17:17:51:755,51,0
chr5	43509348	rs6872851	T	A	9822.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=0.820;VQSLOD=17.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2810,285,0
chr5	43509462	rs11415989	T	TC	4916.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=2.996;VQSLOD=5.38;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1307,105,0
chr5	43527673	rs4318791	C	G	3016.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=1.562;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:535,51,0
chr5	43533992	rs11741521	A	G	2782.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=2.362;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:863,75,0
chr5	43535958	rs10941640	A	G	912.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;DB;DP=21;ExcessHet=1.5490;FS=5.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=-4.680e-01;SOR=1.897;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:682,63,0
chr5	43536088	rs6870034	A	T	57.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.51;SOR=2.303;VQSLOD=18.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:70,6,0
chr5	43536855	rs10941641	T	C	647	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.20;SOR=5.784;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:180,15,0
chr5	43539379	rs57580706	T	TTA	1361.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.37;SOR=5.486;VQSLOD=6.13;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,10:10:30:430,30,0
chr5	43556386	rs56400900	T	C	1180.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.40;DB;DP=22;ExcessHet=1.5490;FS=2.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.24;ReadPosRankSum=0.431;SOR=0.193;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:810,66,0
chr5	43556487	rs55641556	C	A	305.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.89;ReadPosRankSum=-3.190e-01;SOR=3.056;VQSLOD=19.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr5	45267183	rs56154381	T	TA	442.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.612;DB;DP=49;ExcessHet=3.0103;FS=2.841;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=-2.240e-01;SOR=0.333;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,16:49:99:451,0,1089
chr5	45396488	rs35841808	C	CT	416.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DB;DP=25;ExcessHet=3.9794;FS=1.581;MQ=60.00;MQRankSum=0.00;QD=11.89;ReadPosRankSum=1.96;SOR=0.390;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,17:25:99:377,0,121
chr5	49962737	rs151280834	C	CCCT	712.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.05;SOR=0.914;VQSLOD=4.17;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,5:5:15:219,15,0
chr5	49963235	rs62366937	C	T	3495.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.54;SOR=2.535;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1013,78,0
chr5	49963658	rs6869356	T	G	5606.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.68;SOR=4.479;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1673,138,0
chr5	50034549	.	TAA	TA,T	342.33	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.260e-01;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.48;MQRankSum=0.00;QD=10.70;ReadPosRankSum=0.345;SOR=0.546;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,5,4:10:54:192,59,54,85,0,103
chr5	50037451	rs166863	A	G	79.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.45;SOR=2.303;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	50040778	rs282561	T	C	1937.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=4.849;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:346,24,0
chr5	50045967	rs2442107	G	T	6534.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.170e-01;DB;DP=89;ExcessHet=3.0103;FS=1.636;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.68;ReadPosRankSum=-6.220e-01;SOR=0.818;VQSLOD=6.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:89:99:2724,272,0
chr5	50046139	rs282553	A	G	2181.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.95;SOR=4.370;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:631,45,0
chr5	50052800	rs282551	T	C	1770.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.69;SOR=4.223;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:751,57,0
chr5	50052888	rs282550	C	A	4999.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.01;SOR=1.847;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1658,156,0
chr5	50053015	rs282549	G	A	7116.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=0.921;VQSLOD=19.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2263,221,0
chr5	50055456	rs201071119	C	CT,CTT	2247.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.480e-01;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=-1.120e-01;QD=17.98;ReadPosRankSum=1.30;SOR=0.785;VQSLOD=0.554;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,8,24:42:71:1001,588,524,117,0,71
chr5	50057729	rs282547	G	A	5024.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.129e+00;DB;DP=72;ExcessHet=3.0103;FS=6.134;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=-4.180e-01;SOR=0.279;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2155,216,0
chr5	50680233	rs4865658	G	A	829.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.84;SOR=6.184;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:312,24,0
chr5	50682210	.	CTGTGTG	CTG,C	882.09	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-3.720e-01;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.65;MQRankSum=0.00;QD=29.40;ReadPosRankSum=-2.630e-01;SOR=2.985;VQSLOD=4.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,8:11:62:452,251,220,94,0,62
chr5	50683655	rs2288468	T	C	3728.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.73;SOR=5.670;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1747,123,0
chr5	50685505	rs2303751	A	G	7044.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.88;SOR=2.424;VQSLOD=19.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3321,318,0
chr5	52084011	rs2270756	A	C	433.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.97;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.80;ReadPosRankSum=-2.029e+00;SOR=0.446;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:179,15,0
chr5	52084365	rs10067659	G	C	7798.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.124e+00;DB;DP=105;ExcessHet=3.0103;FS=1.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=-3.340e-01;SOR=0.602;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3193,315,0
chr5	52084441	rs2897351	C	A	5136.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=2.833;VQSLOD=19.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1585,135,0
chr5	52084500	rs7706108	G	C	1867.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.10;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.54;ReadPosRankSum=-4.220e-01;SOR=3.258;VQSLOD=18.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:813,57,0
chr5	52096889	rs1499280	C	A	8549.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.30;SOR=1.824;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2262,192,0
chr5	52097183	rs2059202	A	G	1258.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.30;SOR=3.056;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:390,30,0
chr5	52097764	rs11886	T	G	1463.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=32;ExcessHet=1.5490;FS=3.466;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.24;ReadPosRankSum=0.597;SOR=1.550;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1130,96,0
chr5	52157374	rs2447867	T	C	4003.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.930e-01;DB;DP=68;ExcessHet=3.0103;FS=1.326;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=1.58;SOR=0.818;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:1929,204,0
chr5	52161500	rs11427012	G	GC	7656.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DB;DP=101;ExcessHet=1.5490;FS=1.368;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.51;ReadPosRankSum=-1.442e+00;SOR=0.871;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,56:101:99:1957,0,1508
chr5	52189765	.	CT	C	121.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.091;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.77;ReadPosRankSum=-5.890e-01;SOR=0.346;VQSLOD=5.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:42:42,0,173
chr5	52193414	rs377107895	C	CA	11976.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.18;SOR=0.987;VQSLOD=4.94;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3682,333,0
chr5	52204943	rs1478441	C	T	1507.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.294e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=-9.660e-01;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=-1.027e+00;SOR=0.824;VQSLOD=2.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,13:13:39:394,39,0
chr5	52218333	rs2406370	A	G	491.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.80;ReadPosRankSum=-1.068e+00;SOR=1.022;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:308,24,0
chr5	52221488	rs2447872	C	T	360.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.27;SOR=3.056;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	52223350	rs923837	A	G	7113.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.69;DB;DP=100;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=0.693;SOR=0.715;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3399,300,0
chr5	52223699	rs923836	G	T	108.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=2.833;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr5	52243361	rs3764923	A	C	5953.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=78;ExcessHet=3.9794;FS=2.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.97;ReadPosRankSum=-4.850e-01;SOR=0.503;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,38:78:99:1016,0,1196
chr5	52285077	rs27646	C	G	568.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.85;SOR=5.670;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:585,48,0
chr5	52285117	rs28095	T	C	1556.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.970e-01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=-6.770e-01;SOR=1.308;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:79:978,79,0
chr5	52322721	rs26678	G	T	880.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.470e+00;DB;DP=38;ExcessHet=3.9794;FS=5.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.26;ReadPosRankSum=-9.260e-01;SOR=0.280;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,17:38:99:401,0,588
chr5	52337756	rs3212438	A	G	644.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.25;ReadPosRankSum=0.524;SOR=4.615;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:24:135,0,24
chr5	52337783	rs3212439	T	C	963.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.43;ReadPosRankSum=0.712;SOR=3.258;VQSLOD=19.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:219,0,129
chr5	52337908	rs3212441	C	T	5682.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DB;DP=141;ExcessHet=1.5490;FS=2.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=-3.350e-01;SOR=0.532;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,74:141:99:1859,0,1627
chr5	52338083	rs1363192	T	G	4912.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=123;ExcessHet=1.5490;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=-1.200e+00;SOR=0.730;VQSLOD=6.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:59,64:123:99:1699,0,1525
chr5	52338227	rs27956	T	A	1627.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.24;SOR=7.476;VQSLOD=24.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:433,33,0
chr5	52338276	rs1316250	T	C	277.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.88;ReadPosRankSum=-8.420e-01;SOR=2.093;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:116,0,66
chr5	52341064	rs1421937	A	G	1033.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.780e-01;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.62;ReadPosRankSum=0.772;SOR=1.153;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:229,0,358
chr5	52341110	rs3212461	T	G	357.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=-1.180e+00;SOR=0.610;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:129,0,151
chr5	52344046	rs3212486	G	A	711.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.147;DB;DP=22;ExcessHet=1.5490;FS=3.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=1.13;SOR=0.294;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:142,0,423
chr5	52344610	rs1421933	A	G	3721.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.01;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=1.13;SOR=0.751;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:672,0,510
chr5	52347369	rs1126643	C	T	3365.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DB;DP=65;ExcessHet=1.5490;FS=1.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=-1.239e+00;SOR=0.553;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,26:65:99:578,0,916
chr5	52347561	rs1833558	G	A	189.80	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.98;SOR=3.611;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:39,3,0
chr5	52351242	rs2974987	A	G	1034.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.25;ReadPosRankSum=-6.510e-01;SOR=3.334;VQSLOD=18.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:303,0,101
chr5	52351413	rs1062535	G	A	5430.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=124;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=-5.130e-01;SOR=0.684;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,65:124:99:1655,0,1377
chr5	52351746	rs3212522	G	A	686.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.718e+00;DB;DP=7;ExcessHet=1.5490;FS=6.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.71;ReadPosRankSum=0.00;SOR=0.061;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:143,0,106
chr5	52354103	rs996765	A	T	2246.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.75;DB;DP=20;ExcessHet=3.0103;FS=4.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.96;ReadPosRankSum=0.380;SOR=0.132;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:328,0,391
chr5	52355854	rs2303127	T	C	3225.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=64;ExcessHet=1.5490;FS=5.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=-4.250e-01;SOR=1.284;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,29:64:99:807,0,867
chr5	52366138	rs2112290	G	A	1328.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=37;ExcessHet=3.9794;FS=5.825;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=-7.840e-01;SOR=1.358;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:322,0,508
chr5	52367666	rs2287872	A	T	4431.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.97;ReadPosRankSum=0.186;SOR=0.892;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,18:36:99:480,0,428
chr5	52367706	rs2287871	T	C	3510.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=75;ExcessHet=1.5490;FS=1.529;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.80;ReadPosRankSum=0.964;SOR=0.881;VQSLOD=6.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,34:75:99:886,0,1012
chr5	52368922	rs984966	T	A	1653.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.956;DB;DP=29;ExcessHet=1.5490;FS=3.826;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=1.70;SOR=1.348;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:250,0,408
chr5	52370174	rs3212591	G	A	7249.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.660e-01;DB;DP=161;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=-2.000e-02;SOR=0.682;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,78:161:99:1888,0,2106
chr5	52379019	rs2303123	G	A	364.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.34;ReadPosRankSum=-2.530e-01;SOR=2.670;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:57:143,0,57
chr5	52379277	rs2303122	C	T	3911.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510e-01;DB;DP=83;ExcessHet=1.5490;FS=4.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.48;ReadPosRankSum=0.620;SOR=0.563;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,43:83:99:1027,0,967
chr5	52405481	rs25782	G	A	1354.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-01;DB;DP=118;ExcessHet=3.0103;FS=4.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=-7.890e-01;SOR=1.161;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,60:118:99:1363,0,1374
chr5	52778618	rs2070859	C	T	88.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.79;ReadPosRankSum=1.06;SOR=1.508;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:97:97,0,299
chr5	52781376	rs33951575	GTT	G	2460.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=30;ExcessHet=3.0103;FS=10.436;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.55;ReadPosRankSum=1.96;SOR=2.989;VQSLOD=3.09;culprit=FS	GT:AD:DP:GQ:PL	0/1:5,16:30:99:479,0,199
chr5	52781597	rs722910	A	T	2384.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120e-01;DB;DP=51;ExcessHet=6.9897;FS=1.945;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.40;ReadPosRankSum=-2.260e-01;SOR=0.534;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:600,0,768
chr5	52856504	rs2279516	G	C	6602.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.769e+00;DB;DP=141;ExcessHet=1.5490;FS=2.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=-7.590e-01;SOR=0.553;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,141:141:99:4318,423,0
chr5	52856716	rs1532163	A	G	2332.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.027e+00;DB;DP=23;ExcessHet=3.9794;FS=7.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=0.580;SOR=0.203;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:863,69,0
chr5	52899166	rs11414085	C	CTTT	948.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150e-01;DB;DP=33;ExcessHet=6.9897;FS=2.489;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.47;ReadPosRankSum=-1.962e+00;SOR=0.959;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,7:33:99:265,0,849
chr5	52900800	rs28736800	C	T	547.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-6.870e-01;SOR=0.641;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:196,0,314
chr5	52941905	rs31305	A	G	723.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=6.091;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:189,15,0
chr5	52942083	rs31304	A	C	8125.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=1.903;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2509,233,0
chr5	52942197	rs31303	A	G	7105.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;DB;DP=111;ExcessHet=3.9794;FS=1.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.826;SOR=0.583;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3394,332,0
chr5	52942408	rs10571887	TAA	T	307.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DB;DP=7;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.94;ReadPosRankSum=1.37;SOR=2.303;VQSLOD=6.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:159,0,130
chr5	52954280	rs1490769	G	A	362.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.860e-01;DB;DP=12;ExcessHet=3.9794;FS=7.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.68;ReadPosRankSum=-1.513e+00;SOR=0.069;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:178,0,134
chr5	52978722	rs2290697	C	T	58.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.72;ReadPosRankSum=-2.530e-01;SOR=0.446;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,91
chr5	52978776	rs3085740	GGATT	G	738.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.79;ReadPosRankSum=0.545;SOR=2.124;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr5	52979097	rs567	G	A	665.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.84;ReadPosRankSum=1.43;SOR=0.484;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:172,0,202
chr5	53371315	rs70986658	C	CT	1450.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.18;DB;DP=12;ExcessHet=3.0103;FS=1.817;MQ=59.93;MQRankSum=0.00;QD=33.74;ReadPosRankSum=0.044;SOR=1.387;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:39:1|1:53371315_C_CT:585,39,0:53371315
chr5	53371333	rs156384	A	G	1807.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=34.26;SOR=1.364;VQSLOD=4.48;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:53371315_C_CT:610,42,0:53371315
chr5	53450641	rs36001635	C	G	381.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.611e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=0.856;SOR=1.473;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,11:17:99:390,0,209
chr5	53606295	rs35941	T	C	7123.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.19;SOR=0.745;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3468,354,0
chr5	53751901	rs7699	G	A	18176.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.794e+00;DB;DP=191;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.04;ReadPosRankSum=1.13;SOR=0.610;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,191:191:99:5666,569,0
chr5	53751988	rs7823	T	C	12265.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.11;ReadPosRankSum=-1.360e+00;SOR=1.616;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4358,425,0
chr5	53813830	rs76854460	A	C	10684.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.107;DB;DP=271;ExcessHet=1.5490;FS=1.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.20;ReadPosRankSum=1.02;SOR=0.765;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,271:271:99:8028,813,0
chr5	53814052	rs2548615	T	C	10612.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.02;SOR=0.732;VQSLOD=19.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2936,264,0
chr5	53814394	rs2548614	T	C	22194.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=195;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.13;SOR=0.838;VQSLOD=18.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,195:195:99:7161,586,0
chr5	53815066	rs2548613	C	A	11354.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.73;DB;DP=243;ExcessHet=1.5490;FS=0.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.46;ReadPosRankSum=0.312;SOR=0.606;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,242:243:99:8003,688,0
chr5	53815495	rs2548612	A	C	11649.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=165;ExcessHet=3.9794;FS=1.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=0.402;SOR=0.579;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,165:165:99:5328,494,0
chr5	53815722	rs2565014	G	A	1284.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=24;ExcessHet=1.5490;FS=2.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.22;ReadPosRankSum=0.899;SOR=0.242;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:901,72,0
chr5	54253615	rs11954366	C	T	4113.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.626e+00;DB;DP=89;ExcessHet=1.5490;FS=1.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.49;ReadPosRankSum=2.01;SOR=0.507;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2846,265,0
chr5	54253635	rs3815924	T	C	3662.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.937;DB;DP=81;ExcessHet=1.5490;FS=3.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.63;ReadPosRankSum=2.06;SOR=0.407;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2440,243,0
chr5	54253754	rs6883914	T	C	2806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.03;SOR=5.074;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:805,57,0
chr5	54319997	rs3822315	G	A	641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=25;ExcessHet=3.9794;FS=1.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-3.010e-01;SOR=0.349;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:366,0,280
chr5	54320700	rs9292078	C	T	1754.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.970e-01;DB;DP=75;ExcessHet=3.9794;FS=2.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-8.010e-01;SOR=0.843;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,31:75:99:785,0,1194
chr5	54403957	rs3104233	T	C	4286.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.49;SOR=0.895;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1185,117,0
chr5	54404015	rs1875506	C	T	5374.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.38;SOR=1.485;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1560,137,0
chr5	54404057	rs1051846	C	G	696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.191e+00;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=1.57;SOR=0.746;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,30:55:99:705,0,737
chr5	54406118	rs3104231	A	G	720.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=5.784;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr5	54410120	rs3104230	A	C	5167.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.97;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.78;ReadPosRankSum=-1.070e+00;SOR=0.765;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1460,120,0
chr5	54423032	rs10043273	C	G	784.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093e+00;DB;DP=78;ExcessHet=3.0103;FS=0.943;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=-1.517e+00;SOR=0.830;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,34:78:99:793,0,1151
chr5	54433393	rs336081	G	A	4357.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.009e+00;DB;DP=57;ExcessHet=3.0103;FS=2.967;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.19;ReadPosRankSum=1.33;SOR=1.119;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,33:57:99:731,0,532
chr5	54439466	rs1021580	G	A	6983.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.169e+00;DB;DP=67;ExcessHet=3.0103;FS=10.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.98;ReadPosRankSum=1.50;SOR=0.201;VQSLOD=18.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,37:67:99:945,0,848
chr5	54456734	rs2270910	C	G	114.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.798;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=1.78;SOR=0.368;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:123,0,253
chr5	54459961	rs381852	A	G	5366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=0.779;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1834,174,0
chr5	54466544	rs10061133	A	G	666.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=-6.680e-01;SOR=0.811;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,25:55:99:675,0,829
chr5	54468577	.	CTTTTTTT	C	4902.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DP=43;ExcessHet=3.0103;FS=6.780;MQ=59.94;MQRankSum=0.00;QD=29.98;ReadPosRankSum=1.12;SOR=1.734;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,10:43:99:728,0,483
chr5	54468921	rs336115	C	T	2143.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.97;ReadPosRankSum=0.317;SOR=0.874;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:405,0,292
chr5	54516521	rs6879219	G	A	13628.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.895;DB;DP=202;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.934;POSITIVE_TRAIN_SITE;QD=24.96;ReadPosRankSum=1.46;SOR=0.657;VQSLOD=1.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,202:202:99:6097,605,0
chr5	54516752	rs3111181	C	G	4370.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=1.609;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1414,126,0
chr5	54517102	rs34101652	C	CT	3173.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.09;SOR=1.568;VQSLOD=5.85;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,29:29:87:824,87,0
chr5	54517835	rs334876	C	G	965.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.19;SOR=2.621;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:336,33,0
chr5	54518660	rs7730048	G	A	2873.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.62;SOR=2.331;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:941,78,0
chr5	54529458	rs231623	C	G	886.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=6.184;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:387,27,0
chr5	54557438	rs400437	T	C	1614.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.78;SOR=5.235;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:510,39,0
chr5	54563775	rs143912964	TTTA	T	2937.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=30;ExcessHet=3.0103;FS=1.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.59;ReadPosRankSum=1.15;SOR=1.062;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1330,90,0
chr5	54645308	.	C	T	605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.698;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.62;ReadPosRankSum=1.10;SOR=0.650;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:614,0,667
chr5	54693374	rs230802	G	A	5513.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.02;SOR=2.046;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1356,129,0
chr5	54693402	rs230801	G	A	3550.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.58;SOR=2.977;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:846,75,0
chr5	54693483	rs230800	A	G	966.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.72;SOR=6.358;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:333,24,0
chr5	54693516	rs230799	C	T	318.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.92;SOR=4.407;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr5	54695879	rs230793	A	G	295.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.33;SOR=1.179;VQSLOD=19.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:92,9,0
chr5	54701573	rs230783	G	T	548.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=5.421;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr5	54706325	rs139320115	T	TTTTAAA	12605.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=0.925;VQSLOD=5.05;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,73:73:99:3386,228,0
chr5	54709943	rs230766	G	A	5799.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=1.609;VQSLOD=19.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1498,141,0
chr5	54710072	rs201611017	GT	G	1121.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.908;DB;DP=64;ExcessHet=6.9897;FS=2.758;MQ=59.92;MQRankSum=0.00;QD=8.25;ReadPosRankSum=0.924;SOR=0.935;VQSLOD=5.56;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,13:64:99:144,0,728
chr5	54718618	rs230753	G	C	829.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.26;SOR=4.804;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr5	54720224	rs230752	T	C	747.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.31;SOR=2.636;VQSLOD=20.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:150,12,0
chr5	54721499	rs230751	C	A	629.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.00;SOR=5.549;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr5	54721619	rs3217330	A	AT	2524.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.283;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.58;ReadPosRankSum=1.58;SOR=0.799;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,28:28:84:776,84,0
chr5	54721642	rs230750	A	C	4394.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.62;SOR=1.824;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1123,112,0
chr5	54737538	rs2278258	T	C	3361.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.86;SOR=2.885;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1269,105,0
chr5	54737791	rs2278257	G	C	1878.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.73;SOR=3.352;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:613,48,0
chr5	54771380	rs6870449	A	G	1257.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=26.48;SOR=4.680;VQSLOD=4.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:207,18,0
chr5	54771433	rs6888824	G	A	625.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.10;SOR=4.174;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:181,15,0
chr5	54804621	rs7707766	C	T	3116.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.250e-01;DB;DP=36;ExcessHet=3.0103;FS=1.542;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.132;SOR=0.892;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1109,108,0
chr5	54804975	rs7707271	G	A	201.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.55;SOR=2.303;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:132,12,0
chr5	54830188	rs2292281	T	G	1716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.06;SOR=7.428;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:532,39,0
chr5	54830295	rs2292280	T	G	6049.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=31.51;SOR=1.790;VQSLOD=4.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2030,195,0
chr5	54830380	rs11745331	A	G	13761.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=0.967;VQSLOD=20.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4720,456,0
chr5	54929780	rs114244819	C	T	798.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789e+00;DB;DP=17;ExcessHet=3.9794;FS=1.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=-4.230e-01;SOR=1.641;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:225,0,308
chr5	54941810	rs6450329	T	C	1597.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.96;DB;DP=16;ExcessHet=3.9794;FS=4.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=1.13;SOR=1.645;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:54941810_T_C:720,48,0:54941810
chr5	54941811	rs6450330	G	A	1597.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.91;DB;DP=16;ExcessHet=3.9794;FS=2.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.36;ReadPosRankSum=1.23;SOR=1.436;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:54941810_T_C:720,48,0:54941810
chr5	54941906	rs6450331	A	G	327.28	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.921;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=0.464;SOR=2.494;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr5	54944945	rs35843566	TA	T	416.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.820;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-7.280e-01;SOR=1.101;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:286,30,0
chr5	54944976	rs11738633	G	C	774.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.250e-01;DB;DP=15;ExcessHet=3.9794;FS=1.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=1.59;SOR=1.148;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:531,45,0
chr5	54945329	rs5867995	C	CA	241.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.70;DB;DP=5;ExcessHet=3.9794;FS=10.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=-5.240e-01;SOR=4.255;VQSLOD=1.18;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,5:5:15:163,15,0
chr5	54948586	rs138550751	C	CA	2784.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=25;ExcessHet=3.9794;FS=0.851;MQ=60.00;MQRankSum=0.00;QD=26.52;ReadPosRankSum=0.560;SOR=0.858;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:54948586_C_CA:1069,75,0:54948586
chr5	54948598	rs11424790	C	CA	2787.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.141;DB;DP=25;ExcessHet=3.9794;FS=3.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.33;ReadPosRankSum=-1.720e-01;SOR=1.118;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:54948586_C_CA:1068,75,0:54948586
chr5	54948733	rs9687838	T	C	181.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=0.015;SOR=0.551;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr5	54960609	rs4865614	A	G	2545.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.46;DB;DP=36;ExcessHet=3.9794;FS=1.919;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=8.000e-03;SOR=0.852;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1132,108,0
chr5	54960673	rs4865615	C	G	2851.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.630e-01;DB;DP=32;ExcessHet=3.9794;FS=2.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=-2.600e-02;SOR=0.473;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1006,96,0
chr5	54960687	rs4865616	C	T	2577.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.489;DB;DP=29;ExcessHet=3.9794;FS=2.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.55;ReadPosRankSum=0.702;SOR=0.497;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:892,87,0
chr5	54964974	rs7737254	A	G	5538.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=84;ExcessHet=3.9794;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.551;SOR=0.655;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2693,252,0
chr5	54965513	rs11749883	C	T	4510.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.950;DB;DP=73;ExcessHet=3.9794;FS=1.638;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=-8.580e-01;SOR=0.819;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2378,218,0
chr5	54965854	rs2408031	G	A	428.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.49;ReadPosRankSum=0.00;SOR=0.352;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:169,15,0
chr5	54965879	rs2897835	G	A	246.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=0.967;SOR=0.283;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	54968674	rs1374048	T	C	320.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.17;ReadPosRankSum=1.15;SOR=1.802;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr5	54986775	rs6897117	T	C	369.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=0.00;SOR=1.244;VQSLOD=23.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:165,12,0
chr5	54986963	rs3846505	A	G	2554.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=42;ExcessHet=3.9794;FS=0.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.79;ReadPosRankSum=0.044;SOR=0.606;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1272,125,0
chr5	54990005	rs7728664	C	T	1679.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=26;ExcessHet=3.9794;FS=1.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=0.296;SOR=0.496;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:1013,77,0
chr5	54990035	rs10654694	C	CAA	1312.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.458;DB;DP=50;ExcessHet=6.9897;FS=0.802;MQ=60.00;MQRankSum=0.00;QD=14.43;ReadPosRankSum=-2.810e-01;SOR=0.854;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,23:50:99:762,0,290
chr5	54990285	rs140011607	A	G	273.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DB;DP=24;ExcessHet=3.0103;FS=2.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-2.640e-01;SOR=0.169;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:282,0,455
chr5	54990316	rs3042030	CTG	C	1025.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.533;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.65;ReadPosRankSum=-3.270e-01;SOR=0.981;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:380,30,0
chr5	54993829	rs3761766	A	G	2254.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.100e-02;DB;DP=26;ExcessHet=3.9794;FS=1.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=0.833;SOR=0.527;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:841,78,0
chr5	54993929	rs3761767	A	T	517.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.31;DB;DP=3;ExcessHet=3.9794;FS=4.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.52;ReadPosRankSum=0.337;SOR=2.494;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr5	55077599	rs200213654	GA	G	212.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.667;DB;DP=28;ExcessHet=3.9794;FS=2.084;MQ=60.00;MQRankSum=0.00;QD=4.94;ReadPosRankSum=-8.440e-01;SOR=1.031;VQSLOD=5.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,8:28:99:100,0,368
chr5	55149407	rs10940487	T	C	8318.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.090e-01;DB;DP=90;ExcessHet=3.0103;FS=4.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.62;ReadPosRankSum=-1.348e+00;SOR=1.169;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,89:90:99:2818,228,0
chr5	55155402	rs1009639	C	T	6676.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.607;DB;DP=75;ExcessHet=3.0103;FS=2.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=1.53;SOR=0.547;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,74:75:99:2196,200,0
chr5	55178747	rs6873519	A	C	184.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.50;ReadPosRankSum=1.28;SOR=0.368;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:78,0,31
chr5	55204187	rs9632389	T	G	802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=71;ExcessHet=3.0103;FS=3.209;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=0.955;SOR=0.648;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,30:71:99:811,0,1071
chr5	55206202	rs161705	A	G	854.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.61;ReadPosRankSum=1.65;SOR=3.352;VQSLOD=18.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:74:74,0,99
chr5	55210440	rs161702	G	A	896.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.22;ReadPosRankSum=-5.240e-01;SOR=1.542;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,116
chr5	55212379	rs161700	A	G	751.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=-1.036e+00;SOR=3.056;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,110
chr5	55213023	rs161699	C	T	793.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.36;ReadPosRankSum=0.00;SOR=1.096;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:164,0,230
chr5	55246001	rs4865999	A	G	4791.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=0.948;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1796,176,0
chr5	55251931	rs2228043	G	C	1855.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.54;SOR=1.000;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1872,194,0
chr5	55252984	.	C	CA	245.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.920;DP=17;ExcessHet=3.9794;FS=1.323;MQ=60.00;MQRankSum=0.00;QD=11.15;ReadPosRankSum=0.508;SOR=0.409;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:17:94:156,0,94
chr5	55255565	rs1373998	G	A	792.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.34;SOR=0.765;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:80:809,80,0
chr5	55264153	rs2228044	C	G	1580.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.923;DB;DP=59;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-5.870e-01;SOR=1.342;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,57:59:99:1597,127,0
chr5	55271621	rs6861772	A	G	61.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=2.303;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr5	55297299	rs715180	C	A	510.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=5.283;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr5	55398217	rs36060683	CA	C	485.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=14;ExcessHet=6.9897;FS=2.794;MQ=60.00;MQRankSum=0.00;QD=9.53;ReadPosRankSum=0.114;SOR=0.354;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,6:14:99:117,0,169
chr5	55398269	rs318818	G	C	5524.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.04;SOR=2.303;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1477,135,0
chr5	55406952	rs321775	T	C	3366.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.654e+00;DB;DP=90;ExcessHet=6.9897;FS=6.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.66;ReadPosRankSum=0.234;SOR=0.435;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1042,0,1239
chr5	55407542	rs321776	C	T	2385.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DB;DP=78;ExcessHet=6.9897;FS=4.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-1.022e+00;SOR=0.466;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,38:78:99:901,0,939
chr5	55410143	rs318801	G	A	58.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.64;SOR=1.179;VQSLOD=15.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:74,9,0
chr5	55412236	rs318804	C	T	290.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=0.524;SOR=0.941;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:85,0,28
chr5	55412347	rs318805	A	G	1312.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.06;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=0.868;SOR=0.593;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,18:24:99:584,0,162
chr5	55412572	rs146546015	C	T	360.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=-9.250e-01;SOR=0.509;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,15:39:99:369,0,676
chr5	55422681	rs321768	C	T	570.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=10;ExcessHet=3.9794;FS=2.022;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.930;SOR=1.561;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:60:60,0,227
chr5	55439545	.	T	C	849.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DP=74;ExcessHet=3.0103;FS=6.621;MQ=60.00;MQRankSum=0.00;QD=11.48;ReadPosRankSum=0.016;SOR=1.568;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,31:74:99:858,0,1126
chr5	55466397	rs3047043	C	CAAA	177.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-2.350e-01;SOR=0.412;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,5:12:99:186,0,271
chr5	55466689	rs3846521	C	A	889.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.920e-01;DB;DP=56;ExcessHet=3.0103;FS=1.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.88;ReadPosRankSum=-7.500e-02;SOR=0.538;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:32,24:56:99:0|1:55466689_C_A:898,0,1861:55466689
chr5	55466693	rs3857293	C	T	892.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.22;ReadPosRankSum=-2.890e-01;SOR=0.580;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,24:55:99:0|1:55466689_C_A:901,0,1826:55466689
chr5	55472289	rs160936	T	C	1590.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217e+00;DB;DP=46;ExcessHet=6.9897;FS=3.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.378;SOR=1.142;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,22:46:99:587,0,681
chr5	55479223	rs6885745	G	C	168.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.888;DB;DP=13;ExcessHet=3.0103;FS=3.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.94;ReadPosRankSum=1.29;SOR=2.030;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:177,0,259
chr5	55528572	rs142447793	A	AACAC	232.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.58;ReadPosRankSum=-7.030e-01;SOR=0.275;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:72:72,0,199
chr5	55528815	rs149489	T	C	1097.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=44;ExcessHet=3.9794;FS=3.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=1.31;SOR=0.395;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,29:44:99:633,0,337
chr5	55759715	rs157851	T	C	1799.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.61;SOR=3.258;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:552,51,0
chr5	55759810	rs73128991	G	A	964.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.760e-01;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.93;ReadPosRankSum=1.80;SOR=0.652;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:446,0,553
chr5	55760557	rs34290656	AT	A	280.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.49;MQRankSum=0.00;QD=15.57;ReadPosRankSum=0.524;SOR=1.708;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:5:9:52,0,9
chr5	55761177	rs3911664	G	A	232.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.31;SOR=3.912;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:245,18,0
chr5	55807370	rs464605	C	T	6007.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.201e+00;DB;DP=77;ExcessHet=3.0103;FS=8.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.12;ReadPosRankSum=-1.340e-01;SOR=1.444;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,45:77:99:1133,0,896
chr5	55809465	rs173964	A	G	884.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=1.02;SOR=3.442;VQSLOD=17.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:95:234,0,95
chr5	55828636	rs40565	C	T	192.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.16;SOR=3.611;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	55830865	rs39837	C	T	944.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.95;DB;DP=34;ExcessHet=3.9794;FS=2.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-5.860e-01;SOR=1.075;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:529,0,319
chr5	55851729	rs10471981	G	A	61.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.39;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:70,0,64
chr5	55851796	rs35483518	C	CA	1100.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=18;ExcessHet=3.0103;FS=1.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=-5.830e-01;SOR=1.468;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,15:18:1:365,1,0
chr5	56111751	rs28710284	G	C	2886.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.93;SOR=1.759;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1694,150,0
chr5	56111927	rs7731700	C	T	60.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=2.303;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:72,6,0
chr5	56152416	rs832567	C	A	1804.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.630e+00;DB;DP=31;ExcessHet=1.5490;FS=6.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=-3.970e-01;SOR=0.216;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,31:31:93:1|1:56152416_C_A:1004,93,0:56152416
chr5	56161787	rs832575	G	A	4344.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.90;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=1.69;SOR=0.727;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1702,168,0
chr5	56161975	rs865570	C	T	224.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=3.912;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	56177443	rs702689	G	A	2971.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.450e+00;DB;DP=73;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=1.35;SOR=0.704;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,72:73:99:2167,177,0
chr5	56177743	rs832582	G	A	6502.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.23;SOR=0.924;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2730,251,0
chr5	56177848	rs10552703	TCAA	T	9806.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.95;SOR=0.869;VQSLOD=4.21;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3787,256,0
chr5	56178217	rs832583	A	C	5674.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=63;ExcessHet=0.4576;FS=3.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.70;ReadPosRankSum=-7.770e-01;SOR=0.133;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,62:63:99:1982,146,0
chr5	56179212	rs832584	C	T	729.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.28;SOR=5.892;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:203,15,0
chr5	56181956	rs142392946	C	G	208.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.048e+00;DB;DP=27;ExcessHet=3.0103;FS=4.349;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.71;ReadPosRankSum=-1.415e+00;SOR=0.175;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:217,0,602
chr5	56183542	rs832549	C	T	318.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=3.056;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:209,18,0
chr5	56183941	rs832547	C	G	774.27	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.82;SOR=5.892;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:301,21,0
chr5	56184444	rs866222	T	C	79.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.64;SOR=2.303;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr5	56205330	rs72759714	A	G	837.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.17;DB;DP=48;ExcessHet=3.0103;FS=3.195;MQ=60.00;MQRankSum=0.00;QD=17.44;ReadPosRankSum=0.258;SOR=0.179;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:846,0,876
chr5	56205357	rs185220	A	G	6382.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=7.811;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:3116,222,0
chr5	56205643	rs252924	A	G	14213.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.194;DB;DP=253;ExcessHet=1.5490;FS=0.693;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=1.71;SOR=0.596;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,252:253:99:1|1:56205643_A_G:10105,729,0:56205643
chr5	56205662	rs252923	T	G	10495.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.65;DB;DP=155;ExcessHet=1.5490;FS=2.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.01;ReadPosRankSum=-1.458e+00;SOR=0.964;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,155:155:99:1|1:56205643_A_G:7574,527,0:56205643
chr5	56206073	rs33321	G	T	1940.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=31;ExcessHet=1.5490;FS=3.539;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=-6.030e-01;SOR=1.249;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,29:31:43:976,43,0
chr5	56206529	rs33320	C	T	507.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.80;DB;DP=7;ExcessHet=1.5490;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.16;ReadPosRankSum=0.342;SOR=2.303;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr5	56206675	rs33319	C	A	63.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.65;SOR=0.693;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr5	56207123	rs2257505	T	A	4360.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.64;DB;DP=67;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.29;ReadPosRankSum=0.212;SOR=1.485;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2253,201,0
chr5	56209735	rs40497	A	G	2334.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=81;ExcessHet=3.9794;FS=0.557;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.091;SOR=0.754;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,37:81:99:848,0,1184
chr5	56210923	rs331499	G	A	830.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.703;DB;DP=12;ExcessHet=1.5490;FS=2.653;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=0.202;SOR=0.298;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:485,36,0
chr5	56212595	rs832536	C	T	3002.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=55;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=-2.470e-01;SOR=0.725;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,53:55:99:1688,114,0
chr5	56221328	rs702679	A	G	554.94	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=4.047;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:250,21,0
chr5	56224485	rs10684065	T	TTGGC	1280.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.20;SOR=6.666;VQSLOD=5.68;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr5	56224714	rs252893	T	C	3846.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.04;SOR=1.449;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1166,96,0
chr5	56224782	rs150635397	ACT	A	608.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=27.69;SOR=3.767;VQSLOD=4.57;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:30:405,30,0
chr5	56224796	rs11747763	T	A	496.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.93;ReadPosRankSum=-6.080e-01;SOR=0.693;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:30:406,30,0
chr5	56224818	.	T	TCTCACACACA	515.36	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.11;SOR=4.804;VQSLOD=4.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:10:176,10,0
chr5	56224834	rs252891	T	A	426.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.501e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.71;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:23:272,23,0
chr5	56226410	rs252890	T	C	7863.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.61;DB;DP=158;ExcessHet=1.5490;FS=1.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.91;ReadPosRankSum=0.583;SOR=0.810;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,156:158:99:4906,424,0
chr5	56229288	rs832529	C	T	1108.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.633e+00;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=0.079;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:603,48,0
chr5	56255367	rs111894536	AT	A	319.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.330e-01;DB;DP=53;ExcessHet=6.9897;FS=11.935;MQ=60.00;MQRankSum=0.00;QD=2.58;ReadPosRankSum=0.232;SOR=0.161;VQSLOD=0.848;culprit=FS	GT:AD:DP:GQ:PL	0/1:40,13:53:99:170,0,896
chr5	56526565	rs1544737	G	T	4569.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.60;SOR=1.887;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1294,123,0
chr5	56526783	rs1130203	G	A	10840.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.944e+00;DB;DP=116;ExcessHet=3.0103;FS=0.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=0.944;SOR=0.635;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3409,348,0
chr5	56526819	rs3214438	GT	G	5230.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.270e-01;DB;DP=99;ExcessHet=6.9897;FS=3.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.21;ReadPosRankSum=-8.200e-02;SOR=0.874;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:48,51:99:99:1516,0,1409
chr5	56527224	rs1862172	T	C	1808.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.93;SOR=3.417;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:56527224_T_C:516,36,0:56527224
chr5	56527247	rs1862173	T	C	1168.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.03;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.38;ReadPosRankSum=-2.070e-01;SOR=0.619;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:56527224_T_C:405,27,0:56527224
chr5	56527288	rs4267825	C	T	199.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.9794;FS=3.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.60;ReadPosRankSum=0.319;SOR=0.105;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:108,0,33
chr5	56531761	rs13170141	A	G	1337.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=55;ExcessHet=3.9794;FS=3.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=2.35;SOR=0.400;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:752,0,738
chr5	56542024	rs200156257	TA	T	294.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.28;ReadPosRankSum=-1.890e-01;SOR=1.270;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:48:110,0,48
chr5	56546672	rs13184402	G	A	981.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.86;ReadPosRankSum=0.253;SOR=1.270;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:336,27,0
chr5	56546749	rs34533194	C	CT	1053.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.600e-01;DB;DP=21;ExcessHet=3.9794;FS=5.038;MQ=60.00;MQRankSum=0.00;QD=15.72;ReadPosRankSum=-7.220e-01;SOR=0.143;VQSLOD=5.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,19:21:11:402,11,0
chr5	56547059	rs6893468	G	A	2698.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.014e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=0.362;SOR=0.929;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:914,75,0
chr5	57750267	rs32613	A	C	632.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.63;SOR=5.670;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr5	57750350	rs15009	C	G	1553.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=20;ExcessHet=3.9794;FS=20.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=1.29;SOR=5.107;VQSLOD=9.75;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,11:20:99:414,0,247
chr5	57753456	rs702723	C	T	5640.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=44;ExcessHet=3.0103;FS=8.561;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.51;ReadPosRankSum=1.08;SOR=1.877;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,26:44:99:824,0,443
chr5	57754005	rs1848510	G	A	4966.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.290;DB;DP=36;ExcessHet=3.0103;FS=2.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.22;ReadPosRankSum=2.34;SOR=0.781;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,21:36:99:570,0,366
chr5	57754132	rs697134	G	C	5114.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.670e-01;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=1.67;SOR=0.741;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,32:51:99:857,0,497
chr5	57754808	rs697133	G	A	5940.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=65;ExcessHet=3.0103;FS=2.126;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=-6.110e-01;SOR=0.702;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,23:65:99:644,0,1052
chr5	57755923	rs33921924	C	T	170.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.32;ReadPosRankSum=-3.660e-01;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:51:179,0,51
chr5	57790337	rs7704785	T	C	2365.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.146e+00;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.39;ReadPosRankSum=0.968;SOR=0.645;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1387,126,0
chr5	57842049	rs6870990	C	G	2436.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DB;DP=68;ExcessHet=3.9794;FS=9.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=-1.030e+00;SOR=1.356;VQSLOD=19.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,32:68:99:880,0,1001
chr5	57854055	rs35522186	A	T	103.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=1.78;SOR=0.850;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:112,0,110
chr5	57878863	rs1876691	C	A	52.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,145
chr5	57913379	rs2279980	A	G	959.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.90;ReadPosRankSum=-5.520e-01;SOR=0.770;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,34:69:99:968,0,884
chr5	57913884	rs3830457	AATT	A	361.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.691;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=0.225;SOR=0.551;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,7:15:99:270,0,332
chr5	58120753	rs75681594	GT	G	1872.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.485e+00;DB;DP=56;ExcessHet=6.9897;FS=5.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.531;SOR=0.379;VQSLOD=6.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,32:56:99:748,0,499
chr5	58271713	rs112200987	T	TA	1571.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.327e+00;DB;DP=59;ExcessHet=6.9897;FS=3.057;MQ=60.00;MQRankSum=0.00;QD=9.03;ReadPosRankSum=-5.200e-02;SOR=0.992;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,26:59:99:519,0,730
chr5	58284208	rs3805557	C	T	921.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.436;DB;DP=14;ExcessHet=6.9897;FS=3.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-1.290e-01;SOR=1.609;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:171,0,278
chr5	58284283	rs3805556	G	A	3109.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.037e+00;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.56;ReadPosRankSum=-1.033e+00;SOR=0.721;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:563,0,626
chr5	58286625	rs1553114	C	T	1897.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.180e-01;DB;DP=60;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.190;SOR=0.736;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,25:60:99:520,0,837
chr5	58286836	rs1973451	A	G	673.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=1.28;SOR=0.643;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:63:63,0,155
chr5	58289046	rs7737685	G	T	1404.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.9794;FS=4.804;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=0.375;SOR=0.198;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:64:205,0,64
chr5	58289334	rs7724713	A	G	1011.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.360;SOR=0.767;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:280,0,156
chr5	58295380	rs35776313	G	GTA	665.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.656;DB;DP=9;ExcessHet=3.9794;FS=12.359;MQ=60.00;MQRankSum=0.00;QD=13.32;ReadPosRankSum=0.00;SOR=1.389;VQSLOD=1.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,3:9:84:84,0,186
chr5	58297881	rs2968014	A	G	6180.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=101;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.68;ReadPosRankSum=0.633;SOR=0.703;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,48:101:99:1178,0,1235
chr5	58386812	rs10075104	G	A	741.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.077e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=1.18;SOR=1.179;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:144,0,191
chr5	58387258	rs2910643	C	T	597.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.47;ReadPosRankSum=-2.100e-01;SOR=2.636;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:26:177,0,26
chr5	58452915	rs6875867	T	C	866.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.00;SOR=6.358;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:352,27,0
chr5	58475985	rs9292194	G	C	5472.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.069e+00;DB;DP=58;ExcessHet=3.0103;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=0.00;SOR=0.575;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1868,174,0
chr5	58476117	rs9292195	T	C	7980.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.053e+00;DB;DP=90;ExcessHet=3.0103;FS=2.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=0.748;SOR=0.518;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2631,267,0
chr5	58489218	rs1445950	G	A	707.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.205;DB;DP=11;ExcessHet=3.9794;FS=1.852;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.82;ReadPosRankSum=1.17;SOR=1.382;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:135,0,155
chr5	58489384	rs27175	G	A	6083.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.30;SOR=0.721;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:1897,208,0
chr5	58511501	rs6450512	G	A	1419.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;DB;DP=20;ExcessHet=3.9794;FS=4.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=0.684;SOR=2.008;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:383,0,255
chr5	58513701	rs1867725	A	G	219.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003e+00;DB;DP=19;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-2.450e-01;SOR=0.243;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,10:19:99:228,0,256
chr5	58882331	rs11402131	C	CA	905.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.250e-01;DB;DP=29;ExcessHet=6.9897;FS=0.881;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=0.292;SOR=0.904;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,18:29:99:347,0,138
chr5	59284070	rs4700350	G	T	229.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=3.912;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	59443691	rs115935732	C	T	531.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.220e-01;DB;DP=50;ExcessHet=3.0103;FS=1.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-8.120e-01;SOR=0.490;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,20:50:99:540,0,854
chr5	59725671	rs789390	T	G	562.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=59.20;MQRankSum=0.00;QD=17.57;ReadPosRankSum=0.785;SOR=0.997;VQSLOD=-4.192e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,7:13:99:195,0,165
chr5	59894838	rs58987696	T	TA	208.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.120;DB;DP=9;ExcessHet=3.9794;FS=3.214;MQ=60.00;MQRankSum=0.00;QD=11.57;ReadPosRankSum=0.674;SOR=0.105;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:29:159,0,29
chr5	59899413	rs11740327	G	A	1899.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.526e+00;DB;DP=52;ExcessHet=3.9794;FS=1.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.50;ReadPosRankSum=1.12;SOR=0.898;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,31:52:99:811,0,637
chr5	59940502	rs6877561	A	T	1886.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.590e-01;DB;DP=42;ExcessHet=1.5490;FS=3.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.74;ReadPosRankSum=-2.440e-01;SOR=0.412;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,17:42:99:357,0,610
chr5	59984897	rs57521726	A	T	1823.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DB;DP=55;ExcessHet=3.9794;FS=2.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=2.39;SOR=0.478;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:639,0,811
chr5	59995820	rs9942410	G	C	5153.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.800e-01;DB;DP=202;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=1.25;SOR=0.691;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,86:202:99:1947,0,2885
chr5	59996101	rs897672	C	G	102.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.01;ReadPosRankSum=1.07;SOR=0.120;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:62:62,0,169
chr5	60053220	rs7715147	C	A	217.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.73;ReadPosRankSum=-1.569e+00;SOR=1.609;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:88:226,0,88
chr5	60063576	rs1460958	G	A	1894.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=-5.630e-01;SOR=0.743;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:182,0,311
chr5	60063953	rs1444237	C	T	437.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=0.524;SOR=2.303;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,117
chr5	60083275	rs10072745	C	A	1301.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;DB;DP=17;ExcessHet=1.5490;FS=4.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.59;ReadPosRankSum=-7.530e-01;SOR=2.274;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:280,0,268
chr5	60170605	rs4647150	T	C	266.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=1.65;SOR=0.283;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,105
chr5	60186618	rs2306350	C	T	1159.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.507;DB;DP=15;ExcessHet=3.9794;FS=3.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=1.72;SOR=1.378;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,5:15:99:124,0,241
chr5	60186975	rs2306351	C	A	463.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.11;ReadPosRankSum=0.674;SOR=2.985;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,74
chr5	60199201	rs1038144	C	T	517.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.88;SOR=5.283;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	60199363	rs4647102	C	T	3860.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=43;ExcessHet=3.0103;FS=2.299;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=0.318;SOR=0.915;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1354,128,0
chr5	60217651	rs976080	A	C	442.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.93;SOR=4.977;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr5	60224914	rs158570	C	T	207.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-1.085e+00;SOR=0.569;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr5	60240986	rs158922	A	G	1873.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.66;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=-1.015e+00;SOR=0.662;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:555,39,0
chr5	60241142	rs158921	G	A	6282.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=84;ExcessHet=3.0103;FS=6.388;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=1.98;SOR=1.335;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2768,252,0
chr5	60241268	rs158920	G	A	3661.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=145;ExcessHet=3.9794;FS=2.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.574;SOR=0.858;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,75:145:99:1941,0,1595
chr5	60369083	rs10471502	A	G	4107.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=70;ExcessHet=3.9794;FS=1.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.556;SOR=0.805;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2109,209,0
chr5	60369154	rs34070675	TG	T	1564.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.681;DB;DP=31;ExcessHet=3.9794;FS=0.955;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=0.406;SOR=0.510;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,19:31:99:668,0,383
chr5	60448276	rs810884	A	G	444.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.34;ReadPosRankSum=-7.400e-01;SOR=0.425;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:326,33,0
chr5	60448903	rs33927273	T	TAA	1949.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.716e+00;DB;DP=19;ExcessHet=3.9794;FS=1.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.55;ReadPosRankSum=0.417;SOR=0.404;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,19:19:57:855,57,0
chr5	60448947	rs810883	G	A	819.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.427;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.78;ReadPosRankSum=-2.810e-01;SOR=0.616;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:324,24,0
chr5	60628411	rs75429795	G	T	4996.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.517;DB;DP=152;ExcessHet=3.9794;FS=0.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=0.211;SOR=0.640;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:82,70:152:99:0|1:60628411_G_T:2671,0,3902:60628411
chr5	60628414	rs111274143	G	T	4999.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=151;ExcessHet=3.9794;FS=0.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.200;SOR=0.637;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:81,70:151:99:0|1:60628411_G_T:2671,0,3902:60628411
chr5	60786880	rs7732234	C	T	403.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.19;ReadPosRankSum=-8.420e-01;SOR=0.892;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:69,0,116
chr5	60789972	.	CGG	C	465.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.13;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.29;ReadPosRankSum=1.73;SOR=0.634;VQSLOD=5.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,9:42:99:212,0,1707
chr5	60789975	.	A	ACACG	656.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DP=42;ExcessHet=3.9794;FS=0.923;MQ=60.00;MQRankSum=0.00;QD=7.72;ReadPosRankSum=1.84;SOR=0.525;VQSLOD=5.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,9:42:99:521,0,1848
chr5	60831581	rs11749200	T	G	239.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.95;ReadPosRankSum=0.674;SOR=0.495;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:72,0,67
chr5	60835021	rs2276987	T	C	968.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=25;ExcessHet=3.9794;FS=2.347;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.89;ReadPosRankSum=1.88;SOR=0.425;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:374,0,308
chr5	60982107	rs36025054	C	CT	1123.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.126;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.52;ReadPosRankSum=-1.047e+00;SOR=0.643;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,7:28:57:57,0,399
chr5	60999768	rs436696	C	T	2681.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=104;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=1.53;SOR=0.733;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,49:104:99:1116,0,1317
chr5	61604204	rs4700006	C	A	1625.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=29;ExcessHet=1.5490;FS=2.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.56;ReadPosRankSum=-8.300e-02;SOR=0.358;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1165,87,0
chr5	61604456	rs4441833	T	C	3005.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=52;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=1.26;SOR=0.653;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1723,156,0
chr5	61687521	rs72769109	C	T	55.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.05;ReadPosRankSum=-1.645e+00;SOR=0.446;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,105
chr5	61733348	rs153857	G	A	1385.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.50;SOR=4.863;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:293,24,0
chr5	61738690	rs148235524	A	AAAAACAAAAC	2362.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=59.77;QD=30.70;SOR=7.328;VQSLOD=6.03;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:60:893,60,0
chr5	61745737	rs11329383	CT	C	4953.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.420e-01;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=-1.191e+00;SOR=0.653;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,46:51:99:1330,151,0
chr5	61762864	rs75500070	T	G	665.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.98;ReadPosRankSum=1.45;SOR=0.643;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:185,0,286
chr5	61762880	rs35119	A	G	1322.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.63;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=-7.180e-01;SOR=0.756;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:731,51,0
chr5	61763287	rs34542713	TATA	T	368.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.69;ReadPosRankSum=0.484;SOR=0.818;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr5	61772535	rs26635	G	T	3339.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.602;DB;DP=76;ExcessHet=1.5490;FS=2.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=-3.560e-01;SOR=0.527;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2275,227,0
chr5	61781127	rs26640	C	A	8701.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=0.780;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:3046,279,0
chr5	61783458	rs5868310	C	CT	576.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.36;POSITIVE_TRAIN_SITE;QD=26.19;SOR=6.273;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:54,6,0
chr5	61785476	rs26643	A	G	525.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.05;SOR=3.126;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
chr5	61785936	rs26644	T	C	4225.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.203e+00;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=-3.200e-01;SOR=0.735;VQSLOD=6.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1392,158,0
chr5	61826663	rs32179	G	T	7192.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.97;SOR=1.696;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2648,252,0
chr5	61832273	rs366238	T	C	154.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.02;SOR=4.407;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:43,3,0
chr5	61845920	rs32171	G	A	265.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=4.174;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr5	61846846	.	G	GTA	253.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DP=3;ExcessHet=3.9794;FS=0.000;MQ=58.87;MQRankSum=0.674;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=0.967;SOR=1.445;VQSLOD=1.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr5	61857116	.	T	TTCGGCCGGGCGCGGTGGC	738.14	PASS	AC=2;AF=1.00;AN=2;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.08;SOR=5.784;VQSLOD=5.30;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:46:1|1:61857116_T_TTCGGCCGGGCGCGGTGGC:755,46,0:61857116
chr5	61857119	.	A	ACGCCTGTAATCCCAGCACTTTGGG	427.53	PASS	AC=2;AF=1.00;AN=2;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.88;SOR=4.174;VQSLOD=4.59;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:26:1|1:61857116_T_TTCGGCCGGGCGCGGTGGC:442,26,0:61857116
chr5	61874619	.	TA	T	609.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DP=43;ExcessHet=6.9897;FS=4.268;MQ=60.00;MQRankSum=0.00;QD=5.81;ReadPosRankSum=0.536;SOR=1.071;VQSLOD=5.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,13:43:99:206,0,385
chr5	62073118	rs1845526	G	C	14570.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.060e-01;DB;DP=292;ExcessHet=3.9794;FS=1.200;MQ=59.99;MQRankSum=0.00;QD=18.01;ReadPosRankSum=0.985;SOR=0.811;VQSLOD=4.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:144,148:292:99:3273,0,3278
chr5	62073272	rs1445933	T	C	1296.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.42;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=0.419;SOR=0.235;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:341,0,333
chr5	63621395	rs77042869	T	G	62.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:71,0,67
chr5	63802636	rs36025131	C	CT	1186.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.730e-01;DB;DP=39;ExcessHet=6.9897;FS=1.586;MQ=59.87;MQRankSum=1.19;QD=9.81;ReadPosRankSum=-5.640e-01;SOR=0.896;VQSLOD=0.329;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,26:39:99:473,0,197
chr5	63890387	rs4700641	C	T	737.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.59;SOR=3.816;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:265,27,0
chr5	63905068	rs889248	A	G	8731.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e+00;DB;DP=100;ExcessHet=3.0103;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.30;ReadPosRankSum=-5.500e-02;SOR=0.619;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,47:100:99:1204,0,1408
chr5	63991512	rs275830	G	A	837.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.19;ReadPosRankSum=0.923;SOR=0.768;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:296,0,460
chr5	64023981	rs275819	C	T	628.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.409;DB;DP=9;ExcessHet=4.7712;FS=1.298;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-2.310e-01;SOR=0.435;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:105,0,127
chr5	64064263	.	CACCCT	C	852.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=-3.180e-01;SOR=0.728;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,23:58:99:861,0,2188
chr5	64064411	rs3756739	G	C	1422.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.906;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.22;ReadPosRankSum=0.872;SOR=0.612;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,33:58:99:918,0,622
chr5	64064943	rs1363953	G	A	1024.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=33;ExcessHet=6.9897;FS=0.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.02;ReadPosRankSum=0.775;SOR=0.877;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,13:33:99:322,0,513
chr5	64065277	rs202116	G	T	356.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.208e+00;DB;DP=10;ExcessHet=3.9794;FS=5.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.96;ReadPosRankSum=0.179;SOR=0.089;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:180,0,138
chr5	64070617	rs140062546	A	AAATTATGAC	3951.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.139;DB;DP=39;ExcessHet=3.0103;FS=1.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=-6.790e-01;SOR=1.011;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,15:39:99:591,0,2616
chr5	64070812	rs10057598	C	T	821.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.530e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=0.231;SOR=1.688;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:131,0,155
chr5	64077583	rs34500591	C	T	314.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.94;ReadPosRankSum=0.967;SOR=3.056;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:73,0,31
chr5	64077647	rs55793256	A	G	800.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=-1.890e-01;SOR=3.611;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:93:93,0,102
chr5	64077966	rs2011079	A	G	1284.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.59;ReadPosRankSum=0.00;SOR=3.321;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:26:121,0,26
chr5	64081625	rs2367003	A	T	411.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.68;ReadPosRankSum=0.319;SOR=1.473;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:72,0,33
chr5	64084746	rs11340181	CT	C	2477.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=30;ExcessHet=3.0103;FS=4.627;MQ=59.83;MQRankSum=0.00;QD=22.53;ReadPosRankSum=0.021;SOR=1.483;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,13:30:99:261,0,409
chr5	64096046	rs79929128	CT	C	11979.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286e+00;DB;DP=107;ExcessHet=3.0103;FS=0.541;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.20;ReadPosRankSum=1.03;SOR=0.775;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:57,50:107:99:1642,0,1974
chr5	64096170	rs6449760	G	T	9240.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=103;ExcessHet=3.0103;FS=1.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.33;ReadPosRankSum=-1.310e+00;SOR=0.847;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,45:103:99:1072,0,1330
chr5	64097145	rs7735338	C	G	5239.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-01;DB;DP=66;ExcessHet=3.0103;FS=0.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.95;ReadPosRankSum=0.253;SOR=0.804;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,28:66:99:646,0,984
chr5	64097325	rs10050850	C	A	260.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.56;ReadPosRankSum=-9.670e-01;SOR=2.833;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:71,0,36
chr5	64099813	rs725128	G	T	188.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,74
chr5	64267431	rs2278352	A	G	1024.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.340e-01;DB;DP=26;ExcessHet=6.9897;FS=4.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.97;ReadPosRankSum=0.206;SOR=1.270;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:312,0,305
chr5	64267595	rs2278351	T	C	1405.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.685;DB;DP=33;ExcessHet=6.9897;FS=0.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.54;ReadPosRankSum=-2.060e-01;SOR=0.820;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:405,0,447
chr5	64313879	rs2910769	G	A	2493.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586e+00;DB;DP=30;ExcessHet=3.9794;FS=3.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=1.31;SOR=0.409;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,21:30:99:592,0,244
chr5	64447777	rs17206779	C	T	852.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.585;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.70;ReadPosRankSum=-9.720e-01;SOR=0.629;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,40:98:99:861,0,1363
chr5	64466755	rs78912716	A	ACT	629	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=9;ExcessHet=1.5490;FS=2.754;MQ=60.00;MQRankSum=0.00;QD=33.11;ReadPosRankSum=1.69;SOR=0.207;VQSLOD=4.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:405,27,0
chr5	64483759	rs16893475	T	C	561.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.745;DB;DP=35;ExcessHet=3.0103;FS=1.478;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=0.270;SOR=0.458;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,21:35:99:570,0,331
chr5	64568966	rs16893628	A	C	160.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:101,0,110
chr5	64569405	rs1423424	T	A	700.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.21;ReadPosRankSum=-9.210e-01;SOR=3.716;VQSLOD=16.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:63:221,0,63
chr5	64595643	rs3832321	GA	G	363.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.94;ReadPosRankSum=0.967;SOR=3.912;VQSLOD=4.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:20:51,0,20
chr5	64625166	rs75553188	A	G	769.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.60;DB;DP=69;ExcessHet=3.0103;FS=1.006;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-5.380e-01;SOR=0.941;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,28:69:99:778,0,1054
chr5	64629824	.	TAAA	T	208.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DP=9;ExcessHet=3.0103;FS=1.412;MQ=60.00;MQRankSum=0.00;QD=23.16;ReadPosRankSum=0.282;SOR=1.082;VQSLOD=6.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:50:196,0,50
chr5	64747918	rs3830368	T	TG	726.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.849;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.25;ReadPosRankSum=-3.660e-01;SOR=0.593;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:94:215,0,94
chr5	64748681	rs1309615	T	C	1110.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.021e+00;DB;DP=112;ExcessHet=3.0103;FS=0.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=1.76;SOR=0.579;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,51:112:99:1119,0,1560
chr5	64767085	.	A	G	258.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.030e+00;DP=27;ExcessHet=3.0103;FS=2.607;MQ=60.00;MQRankSum=0.00;QD=9.56;ReadPosRankSum=-2.720e-01;SOR=0.160;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:267,0,531
chr5	64814592	rs706657	T	G	162.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.133e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.52;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:97:97,0,147
chr5	64825102	rs1017576	C	T	1410.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.554e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.20;ReadPosRankSum=0.343;SOR=0.529;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:254,0,172
chr5	64837105	rs4700085	C	T	1272.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-02;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.292;SOR=0.665;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,23:43:99:663,0,566
chr5	64838584	rs6891597	G	A	1470.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=65;ExcessHet=3.9794;FS=2.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=-4.730e-01;SOR=0.970;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,34:65:99:851,0,735
chr5	64838758	rs6891955	G	C	703.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DB;DP=27;ExcessHet=3.9794;FS=3.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=1.16;SOR=1.705;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,10:27:99:326,0,476
chr5	64847076	.	C	CA	154.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.240e-01;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.71;MQRankSum=0.00;QD=5.73;ReadPosRankSum=0.992;SOR=0.793;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:37:42,0,37
chr5	64847246	rs13160676	C	T	470.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=14;ExcessHet=6.9897;FS=4.175;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.02;ReadPosRankSum=1.00;SOR=0.701;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:251,0,137
chr5	64847543	rs6893491	T	C	2572.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=28;ExcessHet=3.9794;FS=0.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.656;SOR=0.551;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:482,0,360
chr5	64847680	rs2305117	A	G	254.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.83;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:145,0,27
chr5	64848442	rs3213938	T	C	1991.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=43;ExcessHet=6.9897;FS=2.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=-4.950e-01;SOR=0.936;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,25:43:99:619,0,491
chr5	64857063	rs261253	A	G	762.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.50;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.24;ReadPosRankSum=-6.160e-01;SOR=0.412;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:240,24,0
chr5	64857424	rs10560318	AACAC	A	1733.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.323;DB;DP=13;ExcessHet=3.9794;FS=1.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=-9.730e-01;SOR=0.382;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,6:13:99:231,0,316
chr5	64859027	rs402645	C	G	487.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=0.674;SOR=1.739;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,111
chr5	64859592	rs261252	T	A	2848.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=99;ExcessHet=3.9794;FS=1.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=1.48;SOR=0.585;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,52:99:99:1298,0,1152
chr5	64859884	rs35326591	CTG	C	1083.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.998;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=1.54;SOR=1.445;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,2:10:60:60,0,334
chr5	64859924	rs461534	T	G	671.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=1.38;SOR=1.445;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:64859924_T_G:63,0,551:64859924
chr5	64859926	rs467436	T	A	671.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.221e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.88;ReadPosRankSum=0.489;SOR=1.609;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,2:9:63:0|1:64859924_T_G:63,0,551:64859924
chr5	64863484	rs35529383	T	TA	1765.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=69;ExcessHet=6.9897;FS=1.149;MQ=59.98;MQRankSum=0.00;QD=7.45;ReadPosRankSum=-4.350e-01;SOR=0.806;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,21:69:99:325,0,1019
chr5	64864657	rs152063	A	C	1293.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.17;DB;DP=14;ExcessHet=3.9794;FS=12.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=1.77;SOR=3.314;VQSLOD=12.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:214,0,203
chr5	64865346	rs149512	A	T	972.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=19;ExcessHet=3.9794;FS=1.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.48;ReadPosRankSum=1.16;SOR=1.426;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:209,0,312
chr5	64865405	rs149208	A	G	3661.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.46;ReadPosRankSum=1.42;SOR=0.701;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:697,0,677
chr5	64865975	rs36223	C	T	481.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=5.136;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	64875105	rs37334	G	C	192.04	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.025e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=0.00;SOR=0.105;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr5	64880705	rs10682457	G	GAA	787.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-01;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.22;ReadPosRankSum=0.00;SOR=0.735;VQSLOD=6.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:21:99:262,0,346
chr5	64881688	rs35368186	GT	G	262.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.812;SOR=0.412;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,2:9:48:48,0,233
chr5	64881936	rs27141	A	G	4995.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.013;DB;DP=74;ExcessHet=3.9794;FS=0.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=1.08;SOR=0.640;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,35:74:99:821,0,1007
chr5	64886374	rs3836739	TA	T	430.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=6.9897;FS=2.618;MQ=60.00;MQRankSum=0.00;QD=13.06;ReadPosRankSum=1.38;SOR=1.981;VQSLOD=5.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:41:41,0,65
chr5	64887915	rs154856	T	G	971.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.335e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=0.546;SOR=2.649;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:136,0,108
chr5	64890479	rs36135	A	C	2761.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=44;ExcessHet=3.9794;FS=1.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=0.632;SOR=0.542;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,22:44:99:425,0,625
chr5	64892515	rs36133	G	A	668.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.84;ReadPosRankSum=0.703;SOR=1.230;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:160,12,0
chr5	64892611	rs154859	A	T	468.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=-7.320e-01;SOR=0.387;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:94,0,67
chr5	64906617	rs37330	T	A	1674.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=12;ExcessHet=3.9794;FS=3.160;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=1.23;SOR=2.041;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:203,0,208
chr5	64906885	rs147913782	A	G	157.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.07;ReadPosRankSum=0.339;SOR=0.791;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,8:31:99:166,0,620
chr5	64919877	rs462907	C	G	5530.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=6.40;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.42;ReadPosRankSum=0.474;SOR=0.565;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,37:64:99:1414,0,882
chr5	64919991	rs154854	G	A	19455.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.190e-01;DB;DP=337;ExcessHet=3.9794;FS=0.582;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=1.58;SOR=0.647;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:172,165:337:99:4023,0,4233
chr5	64920803	rs37254	C	T	2448.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.795e+00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.91;ReadPosRankSum=1.53;SOR=0.621;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:360,0,549
chr5	64925211	rs27595	T	G	300.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=0.00;SOR=0.976;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr5	64925256	rs43207	C	T	619.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.664;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.00;ReadPosRankSum=0.253;SOR=0.892;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr5	64926315	rs27594	G	A	166.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=1.65;SOR=1.179;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:69,0,33
chr5	64931971	rs5868412	C	CT	309.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.871;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.00;ReadPosRankSum=-1.140e-01;SOR=0.702;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:74:74,0,177
chr5	64933457	.	CA	C	275.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DP=38;ExcessHet=3.9794;FS=1.829;MQ=59.87;MQRankSum=0.458;QD=3.53;ReadPosRankSum=0.497;SOR=0.983;VQSLOD=0.160;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,6:38:54:54,0,622
chr5	64942684	rs154956	G	T	1000.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.17;ReadPosRankSum=-2.240e-01;SOR=0.556;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:174,0,238
chr5	64942799	rs154955	A	G	2259.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=54;ExcessHet=6.9897;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.234;SOR=0.665;VQSLOD=6.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,26:54:99:599,0,574
chr5	64946836	rs154853	G	T	7411.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=111;ExcessHet=3.9794;FS=1.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.71;ReadPosRankSum=-5.600e-02;SOR=0.819;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,52:111:99:1282,0,1541
chr5	64948611	rs27148	A	G	274.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=0.385;SOR=0.818;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:102,0,103
chr5	64954028	rs27143	G	A	404.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.510e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.60;ReadPosRankSum=0.651;SOR=0.616;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:66:66,0,155
chr5	64954159	rs28084	A	G	3083.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259e+00;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.25;ReadPosRankSum=-2.960e-01;SOR=0.691;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,22:53:99:564,0,867
chr5	64956366	rs37350	A	G	1245.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.56;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.92;ReadPosRankSum=1.86;SOR=1.298;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:396,0,223
chr5	64956428	rs37349	C	T	710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.490e-01;DB;DP=27;ExcessHet=3.9794;FS=1.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=-1.495e+00;SOR=0.377;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:460,0,404
chr5	64956976	rs1611067	G	GT	240.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:59:59,0,59
chr5	64957686	rs37347	A	G	1012.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=30;ExcessHet=3.9794;FS=12.605;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=1.06;SOR=3.086;VQSLOD=12.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,7:30:99:175,0,635
chr5	64957718	rs37346	T	C	1652.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=46;ExcessHet=3.9794;FS=4.377;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.05;ReadPosRankSum=0.511;SOR=1.204;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,13:46:99:301,0,851
chr5	64960311	rs36031543	A	ATCTC	9322.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.815;DB;DP=90;ExcessHet=3.9794;FS=1.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.27;ReadPosRankSum=-1.007e+00;SOR=0.582;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,50:90:99:2000,0,2036
chr5	64968170	rs5868414	AT	A	1041.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.130e-01;DB;DP=20;ExcessHet=3.9794;FS=1.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.37;ReadPosRankSum=0.306;SOR=0.489;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,15:20:83:365,0,83
chr5	65004583	rs145010067	C	CT	212.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.9794;FS=3.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=-3.850e-01;SOR=0.105;VQSLOD=7.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:93:93,0,94
chr5	65008946	rs3833969	GT	G	2604.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.224;DB;DP=51;ExcessHet=3.9794;FS=2.716;MQ=59.99;MQRankSum=0.00;QD=14.97;ReadPosRankSum=1.18;SOR=0.932;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,20:51:99:420,0,730
chr5	65017997	rs2548787	A	G	559.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=0.544;SOR=0.368;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:69:194,0,69
chr5	65018126	rs2548786	C	G	3861.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.634e+00;DB;DP=118;ExcessHet=6.9897;FS=6.793;MQ=60.00;MQRankSum=0.00;QD=10.14;ReadPosRankSum=-8.500e-01;SOR=0.446;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,49:118:99:1114,0,1918
chr5	65018321	rs2548785	C	G	4465.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.740e-01;DB;DP=121;ExcessHet=6.9897;FS=1.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-3.930e-01;SOR=0.603;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,56:121:99:1321,0,1723
chr5	65028907	.	T	C	111.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.874e+00;DP=22;ExcessHet=3.9794;FS=3.487;MQ=48.90;MQRankSum=-2.691e+00;QD=2.31;ReadPosRankSum=1.74;SOR=0.248;VQSLOD=-3.273e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,6:22:99:101,0,506
chr5	65028926	.	G	A	70.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.781e+00;DP=26;ExcessHet=3.9794;FS=5.601;MQ=52.35;MQRankSum=-3.441e+00;NEGATIVE_TRAIN_SITE;QD=1.24;ReadPosRankSum=1.33;SOR=0.178;VQSLOD=-2.479e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,6:26:75:75,0,650
chr5	65029073	.	C	T	137.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DP=71;ExcessHet=3.0103;FS=8.873;MQ=58.96;MQRankSum=-5.330e-01;NEGATIVE_TRAIN_SITE;QD=1.93;ReadPosRankSum=-1.410e+00;SOR=2.432;VQSLOD=-2.832e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:63,8:71:99:0|1:65029073_C_T:146,0,2579:65029073
chr5	65029089	.	A	G	169.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DP=77;ExcessHet=3.0103;FS=4.785;MQ=59.05;MQRankSum=-3.900e-01;NEGATIVE_TRAIN_SITE;QD=2.20;ReadPosRankSum=0.099;SOR=1.473;VQSLOD=-1.992e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,10:77:99:0|1:65029073_C_T:178,0,2706:65029073
chr5	65029103	.	C	T	281.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.798e+00;DP=68;ExcessHet=3.0103;FS=2.889;MQ=59.66;MQRankSum=-7.490e-01;NEGATIVE_TRAIN_SITE;QD=4.14;ReadPosRankSum=0.783;SOR=1.251;VQSLOD=-2.454e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,11:68:99:0|1:65029103_C_T:290,0,2352:65029103
chr5	65029111	.	G	A	356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273e+00;DP=71;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=-6.180e-01;QD=5.02;ReadPosRankSum=0.937;SOR=0.762;VQSLOD=-1.203e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:58,13:71:99:0|1:65029103_C_T:365,0,2479:65029103
chr5	65029118	.	TCA	T	440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.950e-01;DP=72;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=-6.340e-01;QD=6.11;ReadPosRankSum=1.72;SOR=0.799;VQSLOD=0.101;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:59,13:72:99:0|1:65029103_C_T:449,0,2474:65029103
chr5	65029122	.	G	GTC	488.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013e+00;DP=70;ExcessHet=3.0103;FS=0.000;MQ=59.45;MQRankSum=-1.405e+00;QD=6.98;ReadPosRankSum=1.86;SOR=0.706;VQSLOD=-6.740e-02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:55,15:70:99:0|1:65029103_C_T:497,0,2376:65029103
chr5	65029126	.	A	G	519.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.410e-01;DP=69;ExcessHet=3.0103;FS=0.000;MQ=59.44;MQRankSum=-1.281e+00;QD=7.53;ReadPosRankSum=0.320;SOR=0.590;VQSLOD=-1.047e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:53,16:69:99:0|1:65029103_C_T:528,0,2227:65029103
chr5	65029136	.	A	G	542.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.911e+00;DP=76;ExcessHet=3.0103;FS=0.000;MQ=59.29;MQRankSum=-1.870e+00;QD=7.13;ReadPosRankSum=0.156;SOR=0.687;VQSLOD=-1.195e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:57,19:76:99:0|1:65029103_C_T:551,0,2293:65029103
chr5	65029147	.	T	C	707.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.045e+00;DP=76;ExcessHet=3.0103;FS=0.000;MQ=59.29;MQRankSum=-1.676e+00;QD=9.31;ReadPosRankSum=-6.040e-01;SOR=0.783;VQSLOD=-1.016e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:55,21:76:99:0|1:65029147_T_C:716,0,2246:65029147
chr5	65029152	.	A	T	707.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.430e+00;DP=76;ExcessHet=3.0103;FS=0.000;MQ=59.29;MQRankSum=-1.676e+00;QD=9.31;ReadPosRankSum=-4.590e-01;SOR=0.783;VQSLOD=-1.002e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:55,21:76:99:0|1:65029147_T_C:716,0,2246:65029147
chr5	65029159	rs367966666	C	G	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.429e+00;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=-2.746e+00;NEGATIVE_TRAIN_SITE;QD=9.81;ReadPosRankSum=-4.820e-01;SOR=0.733;VQSLOD=-1.386e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,21:73:99:0|1:65029147_T_C:725,0,2120:65029147
chr5	65029163	.	T	C	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.466e+00;DP=73;ExcessHet=3.0103;FS=0.000;MQ=59.54;MQRankSum=-2.746e+00;QD=9.81;ReadPosRankSum=-4.330e-01;SOR=0.733;VQSLOD=-1.385e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:52,21:73:99:0|1:65029147_T_C:725,0,2120:65029147
chr5	65029218	.	C	T	227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.88;DP=56;ExcessHet=3.0103;FS=6.018;MQ=59.73;MQRankSum=-2.237e+00;NEGATIVE_TRAIN_SITE;QD=4.06;ReadPosRankSum=0.949;SOR=1.904;VQSLOD=-2.503e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,9:56:99:0|1:65029218_C_T:236,0,1936:65029218
chr5	65029219	.	G	C	224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.95;DP=55;ExcessHet=3.0103;FS=6.074;MQ=59.72;MQRankSum=-2.212e+00;NEGATIVE_TRAIN_SITE;QD=4.08;ReadPosRankSum=0.683;SOR=1.959;VQSLOD=-2.486e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,9:55:99:0|1:65029218_C_T:233,0,1978:65029218
chr5	65029224	.	C	A	227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.900e-01;DP=56;ExcessHet=3.0103;FS=6.018;MQ=59.54;MQRankSum=-8.580e-01;NEGATIVE_TRAIN_SITE;QD=4.06;ReadPosRankSum=0.100;SOR=1.904;VQSLOD=-2.074e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,9:56:99:0|1:65029218_C_T:236,0,1946:65029218
chr5	65029229	.	T	C	227.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-02;DP=55;ExcessHet=3.0103;FS=6.074;MQ=59.54;MQRankSum=-8.380e-01;NEGATIVE_TRAIN_SITE;QD=4.13;ReadPosRankSum=-5.460e-01;SOR=1.959;VQSLOD=-2.133e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,9:55:99:0|1:65029218_C_T:236,0,1946:65029218
chr5	65029252	.	T	C	123.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.280;DP=44;ExcessHet=3.0103;FS=1.893;MQ=59.42;MQRankSum=-1.056e+00;NEGATIVE_TRAIN_SITE;QD=2.80;ReadPosRankSum=-2.225e+00;SOR=1.284;VQSLOD=-2.918e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,6:44:99:0|1:65029218_C_T:132,0,1662:65029218
chr5	65029301	rs34986	A	G	2680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=55.21;POSITIVE_TRAIN_SITE;QD=32.30;SOR=1.248;VQSLOD=3.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:861,84,0
chr5	65036697	rs35913094	CTT	C	58.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.39;SOR=2.303;VQSLOD=4.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:5:68,5,0
chr5	65037019	rs2561223	G	C	184.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=4;ExcessHet=4.7712;FS=3.522;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.54;ReadPosRankSum=0.524;SOR=0.069;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:119,0,30
chr5	65054811	rs40107	A	G	989.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.12;ReadPosRankSum=0.151;SOR=2.303;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:143,0,134
chr5	65073224	rs34979	C	A	9768.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=59.95;POSITIVE_TRAIN_SITE;QD=32.24;SOR=0.740;VQSLOD=4.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3377,315,0
chr5	65075858	rs252648	A	G	625.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=7;ExcessHet=3.9794;FS=3.349;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.21;ReadPosRankSum=-5.450e-01;SOR=2.200;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:58:162,0,58
chr5	65288791	rs27132	A	G	1855.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.48;SOR=7.743;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:748,57,0
chr5	65308055	rs706678	C	G	255.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.689;DB;DP=5;ExcessHet=1.5490;FS=6.990;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.99;ReadPosRankSum=1.18;SOR=3.611;VQSLOD=13.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:180,15,0
chr5	65309609	rs433773	G	C	2236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=7.941;VQSLOD=24.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:526,36,0
chr5	65316997	rs33911008	TA	T	738.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.55;SOR=6.273;VQSLOD=7.26;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:68,6,0
chr5	65317181	rs706679	C	T	8478.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=0.714;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2134,233,0
chr5	65317332	rs784276	A	T	2558.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.36;SOR=4.139;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:65317332_A_T:585,42,0:65317332
chr5	65317338	rs706680	T	C	2330.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.17;SOR=3.958;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:42:1|1:65317332_A_T:585,42,0:65317332
chr5	65349061	rs36302	T	A	344.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.61;SOR=4.615;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr5	65350044	rs35278406	A	G	487.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.900e-02;DB;DP=48;ExcessHet=3.0103;FS=2.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.15;ReadPosRankSum=0.356;SOR=1.127;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:496,0,784
chr5	65364692	rs1160930	CCT	C	483.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.270e-01;DB;DP=31;ExcessHet=3.0103;FS=5.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=-3.810e-01;SOR=1.802;VQSLOD=6.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,13:31:99:492,0,727
chr5	65459773	rs3763061	T	C	533.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=43;ExcessHet=3.0103;FS=2.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=1.41;SOR=0.352;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,21:43:99:542,0,473
chr5	65893060	rs13161275	A	C	480.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.34;SOR=2.985;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:123,12,0
chr5	66055787	.	T	A	312.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.87;ReadPosRankSum=-1.280e+00;SOR=0.465;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:321,0,424
chr5	66084260	rs2289881	G	T	509.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.284e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=-7.090e-01;SOR=1.051;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
chr5	66166427	rs1160971	CAT	C	2684.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;DB;DP=50;ExcessHet=1.5490;FS=5.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=1.50;SOR=1.622;VQSLOD=6.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,18:50:99:651,0,1408
chr5	66166614	rs36138	G	A	2834.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.010e-01;DB;DP=213;ExcessHet=3.0103;FS=0.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=1.91;SOR=0.764;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,116:213:99:2843,0,2327
chr5	66195610	rs461806	C	T	125.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.052;DB;DP=17;ExcessHet=3.0103;FS=2.336;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.37;ReadPosRankSum=0.402;SOR=0.223;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:134,0,298
chr5	66195701	rs458115	C	T	2274.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.040e-01;DB;DP=60;ExcessHet=1.5490;FS=3.953;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.61;ReadPosRankSum=2.09;SOR=0.793;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:624,0,705
chr5	66198350	rs464659	G	A	259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.40;ReadPosRankSum=1.24;SOR=0.512;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:53:53,0,253
chr5	66212985	rs37567	C	G	3844.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=72;ExcessHet=1.5490;FS=0.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=-2.540e-01;SOR=0.818;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,34:72:99:924,0,920
chr5	66391516	.	C	CT	51.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730e-01;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.52;ReadPosRankSum=-2.940e-01;SOR=0.741;VQSLOD=5.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:27,7:38:59:59,0,594
chr5	66406143	rs2545394	G	A	2061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-02;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=1.30;SOR=0.621;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,36:72:99:1038,0,1082
chr5	66416764	rs2254790	C	A	2054.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=33;ExcessHet=1.5490;FS=2.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=-7.210e-01;SOR=0.419;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:492,0,404
chr5	66429091	rs2113054	T	C	94.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:60:102,0,60
chr5	66429329	rs2371882	G	T	9529.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.56;SOR=1.329;VQSLOD=4.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2949,269,0
chr5	66440285	rs111394892	TACACACAC	T,TAC	707.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.87;SOR=5.892;VQSLOD=6.29;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,3:5:55:210,102,88,70,0,55
chr5	66459878	rs1705399	G	C	11750.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.480e-01;DB;DP=99;ExcessHet=3.0103;FS=3.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.73;ReadPosRankSum=1.61;SOR=0.518;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3246,297,0
chr5	66480004	rs1697144	T	C	10550.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.82;SOR=0.759;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3371,297,0
chr5	66492412	rs5744463	C	G	570.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=59;ExcessHet=3.0103;FS=3.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.286;SOR=1.193;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,24:59:99:579,0,1007
chr5	67454986	rs58351524	CT	C	222.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=10;ExcessHet=3.9794;FS=5.102;MQ=59.53;MQRankSum=0.00;QD=11.11;ReadPosRankSum=0.126;SOR=2.235;VQSLOD=4.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:10:16:145,0,16
chr5	67493863	rs73126543	T	G	303.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.66;ReadPosRankSum=-4.500e-01;SOR=1.329;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:312,0,156
chr5	67522722	rs706713	C	T	2007.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.927;DB;DP=49;ExcessHet=6.9897;FS=1.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=-2.550e-01;SOR=0.855;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:669,0,632
chr5	67522851	rs706714	A	C	901.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.567e+00;DB;DP=16;ExcessHet=6.9897;FS=3.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.42;ReadPosRankSum=-3.070e-01;SOR=0.370;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:16:99:162,0,255
chr5	67569391	rs2302974	A	C	1114.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.18;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.525;SOR=0.831;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,11:34:99:326,0,617
chr5	67569479	rs2302975	A	G	490.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=6.9897;FS=3.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.64;ReadPosRankSum=-1.890e-01;SOR=2.133;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,111
chr5	67569746	rs171649	G	A	1318.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=29;ExcessHet=3.9794;FS=3.954;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.67;ReadPosRankSum=0.395;SOR=0.297;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,16:29:99:464,0,313
chr5	67575323	rs201581886	ATT	A	447.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.040e-01;DB;DP=13;ExcessHet=6.9897;FS=2.071;MQ=60.00;MQRankSum=0.00;QD=10.41;ReadPosRankSum=1.47;SOR=0.287;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,6:13:99:0|1:67575323_ATT_A:214,0,307:67575323
chr5	67575344	rs16897620	A	G	463.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=14;ExcessHet=3.9794;FS=4.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=0.649;SOR=2.000;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,5:14:99:0|1:67575323_ATT_A:205,0,367:67575323
chr5	67575642	rs3815701	A	G	626.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.957;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=0.00;SOR=0.765;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:197,0,410
chr5	67576330	.	CT	C	47.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.95;ReadPosRankSum=1.15;SOR=0.190;VQSLOD=5.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:56:56,0,234
chr5	67577051	rs3730086	G	A	291.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=1.01;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:155,0,67
chr5	67584357	rs2888323	A	G	458.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.82;ReadPosRankSum=1.52;SOR=1.329;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:228,0,134
chr5	67584758	rs1862162	A	G	44.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.43;ReadPosRankSum=1.50;SOR=0.446;VQSLOD=22.47;culprit=QD	GT:AD:DP:GQ:PL	0/1:8,2:10:53:53,0,273
chr5	67587994	rs3730087	C	T	989.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=18;ExcessHet=1.5490;FS=3.015;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=0.00;SOR=2.030;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:347,0,175
chr5	67593016	rs1445760	T	C	800.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.57;DB;DP=14;ExcessHet=1.5490;FS=3.163;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=0.947;SOR=2.066;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:201,0,233
chr5	68409094	rs164393	A	C	1479.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.192;DB;DP=43;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=0.641;SOR=0.657;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,16:43:99:384,0,611
chr5	68412048	rs34215592	A	AT	862.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.27;ReadPosRankSum=-2.400e-01;SOR=0.637;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,13:31:99:351,0,531
chr5	68415902	rs56943665	G	A	859.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-1.080e-01;SOR=0.764;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:246,0,181
chr5	68424077	rs10689146	C	CT	113.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.46;ReadPosRankSum=-1.200e-01;SOR=1.609;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:9:49,0,9
chr5	68470368	rs8192270	AG	A	632.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.820e-01;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.60;ReadPosRankSum=-4.930e-01;SOR=0.495;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:63:143,0,63
chr5	68470559	rs426392	T	C	3562.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.810e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.61;ReadPosRankSum=0.267;SOR=1.556;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:476,0,441
chr5	68470599	rs3087334	C	CATTA	7172.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.365e+00;DB;DP=49;ExcessHet=3.0103;FS=6.102;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=-9.660e-01;SOR=1.993;VQSLOD=6.11;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,32:49:99:1326,0,776
chr5	68471247	rs1128761	G	A	5032.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.374e+00;DB;DP=127;ExcessHet=6.9897;FS=4.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-2.670e-01;SOR=0.939;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,61:127:99:1505,0,1733
chr5	68471552	rs419902	T	C	715.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.47;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:73:75,0,73
chr5	68473305	rs3087333	A	AT	3024.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=69;ExcessHet=6.9897;FS=2.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=0.250;SOR=0.728;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,40:69:99:954,0,648
chr5	68491410	rs17271763	G	A	640.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.42;ReadPosRankSum=-6.000e-02;SOR=0.880;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:62:183,0,62
chr5	68492746	rs350106	A	G	906.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.72;ReadPosRankSum=-1.150e+00;SOR=4.892;VQSLOD=13.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:114,0,28
chr5	68513599	rs2242350	G	T	1214.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.592e+00;DB;DP=88;ExcessHet=3.0103;FS=0.888;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.80;ReadPosRankSum=-4.680e-01;SOR=0.822;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,46:88:99:1223,0,1137
chr5	68522298	rs12189395	A	G	927.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.690e-01;DB;DP=17;ExcessHet=6.9897;FS=1.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.73;ReadPosRankSum=0.305;SOR=0.527;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:199,0,291
chr5	68524848	.	CAA	C	483.09	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DP=8;ExcessHet=3.0103;FS=6.101;MQ=60.00;MQRankSum=0.00;QD=11.78;ReadPosRankSum=0.340;SOR=2.494;VQSLOD=4.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,5:8:51:114,0,51
chr5	68531099	rs72767837	G	A	1300.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.095;SOR=0.718;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:402,0,216
chr5	68531253	rs2972388	C	T	5921.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=65;ExcessHet=3.0103;FS=2.221;MQ=59.90;MQRankSum=-3.380e-01;POSITIVE_TRAIN_SITE;QD=24.78;ReadPosRankSum=0.175;SOR=0.957;VQSLOD=2.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,25:65:99:651,0,1049
chr5	68531504	rs2972387	T	C	623.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=5.441;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.70;ReadPosRankSum=0.00;SOR=3.383;VQSLOD=16.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:65:65,0,213
chr5	68548321	.	CTT	C	325.65	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=23.26;ReadPosRankSum=0.00;SOR=1.627;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:6:15:126,15,0
chr5	68550348	rs71612521	C	CAAA	282.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=59.34;MQRankSum=0.00;QD=9.12;ReadPosRankSum=1.37;SOR=0.570;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:64:73,0,64
chr5	68551507	rs2291519	T	G	7387.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.979;DB;DP=79;ExcessHet=3.0103;FS=3.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.272;SOR=0.461;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,34:79:99:802,0,1069
chr5	68553758	rs2291520	T	C	752.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.22;ReadPosRankSum=-1.368e+00;SOR=3.258;VQSLOD=18.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:98:140,0,98
chr5	68555954	rs2130757	C	T	747.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.70;ReadPosRankSum=-2.450e+00;SOR=0.379;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:129,0,235
chr5	68564985	rs59967147	TA	T	1398.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.330e-01;DB;DP=29;ExcessHet=3.9794;FS=5.185;MQ=60.00;MQRankSum=0.00;QD=14.42;ReadPosRankSum=-1.290e-01;SOR=0.291;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,17:29:99:385,0,217
chr5	68572668	rs4077460	C	T	2616.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=13;ExcessHet=3.0103;FS=3.659;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.08;ReadPosRankSum=0.926;SOR=1.681;VQSLOD=6.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,5:13:99:172,0,266
chr5	68578428	rs4421064	T	C	287.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=4.174;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr5	68581389	rs3890705	G	A	196.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.226;DB;DP=18;ExcessHet=3.0103;FS=2.527;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=1.51;SOR=0.197;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:205,0,313
chr5	68587900	rs6866993	A	G	95.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=0.241;SOR=0.283;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:104,0,178
chr5	68595584	rs34935424	C	T	203.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=1.07;SOR=1.402;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:72:72,0,110
chr5	68596068	rs28704183	C	G	3316.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.55;SOR=2.454;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1105,95,0
chr5	68602746	rs6881767	G	C	2625.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.021;DB;DP=65;ExcessHet=6.9897;FS=1.118;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.415;SOR=0.786;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,35:65:99:839,0,740
chr5	68603508	.	C	CA	37.13	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=18.56;SOR=2.303;VQSLOD=2.14;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	68607284	rs11957698	C	G	296.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.400e-02;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=0.00;SOR=0.746;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:95:95,0,282
chr5	68609885	rs11749723	G	T	1486.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.308e+00;DB;DP=32;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=0.211;SOR=0.638;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:404,0,435
chr5	68610009	rs28462372	A	C	1214.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=3.477;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:215,15,0
chr5	68616331	rs10471774	C	T	334.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-1.010e+00;SOR=0.730;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,16:55:99:343,0,983
chr5	68665736	rs3756400	T	C	3043.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.32;SOR=7.083;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:1014,69,0
chr5	68667263	rs138054935	TCCC	T	208.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=59.92;QD=29.78;SOR=2.584;VQSLOD=4.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr5	68669490	rs11948450	G	A	1862.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.48;SOR=3.109;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:217,18,0
chr5	68669513	.	ATTT	A	89.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.78;ReadPosRankSum=-4.840e-01;SOR=0.941;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:26:97,0,26
chr5	68670101	rs3797091	A	G	1814.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.807e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.61;ReadPosRankSum=-1.178e+00;SOR=2.093;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:314,0,164
chr5	68680781	rs375164458	CT	C	62.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.080e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=58.95;MQRankSum=-7.650e-01;QD=6.95;ReadPosRankSum=-4.640e-01;SOR=0.527;VQSLOD=0.372;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:70:70,0,89
chr5	68688608	rs299080	T	C	8502.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=81;ExcessHet=3.0103;FS=2.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.44;ReadPosRankSum=-8.440e-01;SOR=0.953;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1274,0,942
chr5	68692375	rs34097088	T	TA	320.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.450;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.01;ReadPosRankSum=1.07;SOR=0.610;VQSLOD=7.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,3:8:2:76,2,0
chr5	68696035	rs142095225	G	GTTTATTTA	2059.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.28;SOR=1.814;VQSLOD=4.44;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,7:7:20:314,20,0
chr5	68706252	rs10940223	G	T	2495.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.18;SOR=3.426;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:859,69,0
chr5	68706438	rs6871685	G	A	6154.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.93;SOR=1.341;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2098,210,0
chr5	68715310	rs1185246	C	T	13384.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=190;ExcessHet=3.0103;FS=2.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.677;SOR=0.522;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,94:190:99:2278,0,2353
chr5	68716463	rs299090	G	A	597.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=0.00;SOR=2.833;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
chr5	68716481	.	CT	C	35.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.88;SOR=0.223;VQSLOD=5.68;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:16:44,0,16
chr5	68720419	rs299099	T	G	805.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.768;DB;DP=74;ExcessHet=3.0103;FS=0.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-3.710e-01;SOR=0.883;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,32:74:99:814,0,1090
chr5	68728544	rs299075	G	A	324.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.154e+00;DB;DP=39;ExcessHet=3.0103;FS=1.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.31;ReadPosRankSum=0.714;SOR=0.481;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:333,0,599
chr5	68729682	rs299073	C	T	1649.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.100e-01;DB;DP=32;ExcessHet=3.0103;FS=1.230;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.57;ReadPosRankSum=-1.198e+00;SOR=1.039;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,14:32:99:0|1:68729682_C_T:381,0,468:68729682
chr5	68739027	rs35672884	C	CT	1407.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.648;DB;DP=48;ExcessHet=6.9897;FS=0.772;MQ=60.00;MQRankSum=0.00;QD=12.80;ReadPosRankSum=0.031;SOR=0.872;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,18:48:99:308,0,484
chr5	68739202	rs1183278	T	C	64.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=1.65;SOR=1.609;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:73:73,0,100
chr5	68929183	rs375189870	C	G	1069.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=44.35;QD=30.55;SOR=1.148;VQSLOD=-4.121e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1086,105,0
chr5	68929424	rs148552304	T	C	1613.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=52.99;QD=30.44;SOR=0.808;VQSLOD=0.406;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1630,159,0
chr5	69515692	rs202180149	G	GT	5547.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.180e-01;DB;DP=183;ExcessHet=6.9897;FS=2.414;MQ=24.76;MQRankSum=1.49;QD=8.63;ReadPosRankSum=0.543;SOR=0.368;VQSLOD=-6.910e-02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:148,35:183:99:0|1:69515684_G_A:940,0,5940:69515684
chr5	69784129	.	A	C	103.63	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=0.4576;FS=0.000;MQ=40.00;QD=34.54;SOR=2.833;VQSLOD=-5.060e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr5	69784650	.	C	G	372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.234e+00;DP=44;ExcessHet=3.0103;FS=0.000;MQ=47.61;MQRankSum=-1.450e-01;QD=8.46;ReadPosRankSum=-8.670e-01;SOR=0.527;VQSLOD=-3.824e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:381,0,848
chr5	69784835	.	T	C	165.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.233e+00;DP=42;ExcessHet=3.0103;FS=3.097;MQ=49.00;MQRankSum=-3.477e+00;QD=3.93;ReadPosRankSum=-6.940e-01;SOR=1.251;VQSLOD=-3.335e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,10:42:99:174,0,975
chr5	69806684	rs71261886	G	C	687.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141e+00;DB;DP=72;ExcessHet=3.0103;FS=6.105;MQ=48.06;MQRankSum=-6.459e+00;QD=9.55;ReadPosRankSum=1.89;SOR=1.097;VQSLOD=-4.035e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,33:72:99:696,0,1058
chr5	69806730	rs74366926	G	C	15798.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=39.96;MQRankSum=-7.408e+00;QD=31.22;ReadPosRankSum=-1.028e+00;SOR=0.661;VQSLOD=-5.238e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:36,26:62:99:0|1:69806730_G_C:819,0,1796:69806730
chr5	69806754	rs76764698	C	T	19250.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.543;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=39.77;MQRankSum=-6.596e+00;QD=28.12;ReadPosRankSum=-5.460e-01;SOR=0.675;VQSLOD=-5.045e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,15:52:99:0|1:69806730_G_C:540,0,1814:69806730
chr5	69806756	rs80315364	C	G	19228.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=52;ExcessHet=3.0103;FS=1.000;MQ=40.06;MQRankSum=-6.596e+00;QD=28.13;ReadPosRankSum=-7.680e-01;SOR=0.683;VQSLOD=-5.075e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:37,15:52:99:0|1:69806730_G_C:518,0,1817:69806730
chr5	69806867	rs183273350	G	C	102.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.342;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=56.44;MQRankSum=-4.296e+00;NEGATIVE_TRAIN_SITE;QD=1.89;ReadPosRankSum=-2.358e+00;SOR=0.892;VQSLOD=-4.414e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,7:54:99:0|1:69806861_CA_C:111,0,4901:69806861
chr5	69807057	rs371262597	C	G	626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.573e+00;DB;DP=25;ExcessHet=6.9897;FS=1.081;MQ=41.81;MQRankSum=-1.984e+00;QD=2.41;ReadPosRankSum=0.858;SOR=0.925;VQSLOD=-4.986e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,5:25:99:109,0,720
chr5	70307464	rs4976210	T	C	6273.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=0.135;SOR=0.627;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:798,0,476
chr5	70308251	rs28409706	C	T	12927.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.571e+00;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=-7.140e-01;SOR=0.592;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,67:126:99:1565,0,1525
chr5	70351293	.	G	T	333.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590e-01;DP=42;ExcessHet=3.0103;FS=0.000;MQ=43.00;MQRankSum=-1.460e+00;QD=7.93;ReadPosRankSum=0.350;SOR=0.641;VQSLOD=-4.423e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,16:42:99:342,0,632
chr5	70422927	.	T	G	46.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DP=7;ExcessHet=3.0103;FS=0.000;MQ=42.04;MQRankSum=0.180;QD=6.60;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=-5.049e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:52:52,0,152
chr5	70751818	rs3748043	T	G	15805.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=32.39;SOR=0.842;VQSLOD=3.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:4186,387,0
chr5	70762191	rs10079014	A	G	1096.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=9;ExcessHet=3.9794;FS=3.284;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-1.630e-01;SOR=2.133;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:95:192,0,95
chr5	70763059	rs6452722	G	A	2684.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=8.349;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:595,42,0
chr5	70763088	rs7442961	A	G	789.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.549e+00;DB;DP=25;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=1.32;SOR=1.082;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,10:25:99:244,0,487
chr5	70786726	rs35267960	G	GAC	232.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.69;ReadPosRankSum=-6.740e-01;SOR=0.941;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:6:26:241,0,26
chr5	70797500	.	TA	T,TAA	984.46	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.482;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.67;ReadPosRankSum=0.356;SOR=0.912;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,6:13:78:153,78,137,89,0,134
chr5	70800475	rs3761966	C	T	3141.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.302;DB;DP=65;ExcessHet=3.9794;FS=6.329;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.93;ReadPosRankSum=0.220;SOR=1.216;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,39:65:99:872,0,520
chr5	70800538	rs3761967	G	A	1583.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.802;DB;DP=71;ExcessHet=3.9794;FS=0.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-3.460e-01;SOR=0.767;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,31:71:99:775,0,992
chr5	70805272	rs36098798	GC	G	335.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=11;ExcessHet=3.9794;FS=2.395;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=1.24;SOR=1.569;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:95:95,0,175
chr5	70806457	rs715748	G	A	3624.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-02;DB;DP=137;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=1.70;SOR=0.700;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,64:137:99:1670,0,2002
chr5	70806649	rs1961760	T	A	2396.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=88;ExcessHet=3.9794;FS=1.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=0.553;SOR=0.551;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,39:88:99:1001,0,1354
chr5	70806711	rs715747	C	G	9100.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.92;SOR=0.818;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2871,243,0
chr5	70806958	rs6886336	G	A	9092.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=1.433;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2657,257,0
chr5	70807016	rs375426591	CT	C	2946.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=41;ExcessHet=3.9794;FS=3.527;MQ=60.00;MQRankSum=0.00;QD=18.30;ReadPosRankSum=0.657;SOR=1.069;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,18:41:99:449,0,603
chr5	70807073	rs421128	C	T	1784.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.050e-01;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.80;ReadPosRankSum=0.309;SOR=0.784;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:254,0,340
chr5	70807991	rs418738	G	A	116.11	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;DB;DP=9;ExcessHet=3.9794;FS=2.128;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.81;ReadPosRankSum=1.38;SOR=0.269;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:22:22,0,270
chr5	70808890	.	CAAAA	C,CAA	537.95	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.04;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.41;ReadPosRankSum=-1.465e+00;SOR=0.495;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,5:9:33:231,136,160,57,0,33
chr5	70809169	rs1698063	A	G	273.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=0.842;SOR=1.022;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:63:63,0,114
chr5	70811821	rs279322	A	G	169.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.910e-01;DB;DP=6;ExcessHet=3.9794;FS=3.140;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=0.361;SOR=2.093;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:87:87,0,104
chr5	70818329	.	CA	C	247.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.137e+00;DP=21;ExcessHet=6.9897;FS=5.801;MQ=59.88;MQRankSum=0.00;QD=5.51;ReadPosRankSum=0.214;SOR=0.241;VQSLOD=4.67;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,4:21:37:37,0,279
chr5	70818877	rs156753	A	G	196.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.319;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:109,0,26
chr5	70828417	rs146950089	TTTTG	T	552.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=1.28;SOR=3.126;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:180,12,0
chr5	70834703	rs276591	A	C	574.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=16;ExcessHet=3.9794;FS=4.664;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.72;ReadPosRankSum=0.775;SOR=0.121;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:192,0,225
chr5	70834833	rs276590	G	A	2370.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.440e-01;DB;DP=70;ExcessHet=3.9794;FS=2.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.59;ReadPosRankSum=0.199;SOR=0.525;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,29:70:99:696,0,1102
chr5	70834926	rs276589	T	C	5053.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=81;ExcessHet=3.9794;FS=0.936;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=0.342;SOR=0.618;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,45:81:99:1134,0,769
chr5	70837260	.	G	GT	32.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.170e-01;DP=43;ExcessHet=3.0103;FS=1.961;MQ=59.67;MQRankSum=0.470;QD=0.75;ReadPosRankSum=1.03;SOR=0.285;VQSLOD=-1.172e-01;culprit=QD	GT:AD:DP:GQ:PL	0/1:37,6:43:41:41,0,821
chr5	70837295	rs6453014	A	C	7351.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.11;DB;DP=74;ExcessHet=3.0103;FS=10.618;MQ=59.80;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.94;ReadPosRankSum=0.868;SOR=0.051;VQSLOD=3.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,73:74:99:2122,208,0
chr5	70840233	rs182190	C	T	1923.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=60;ExcessHet=3.9794;FS=1.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.57;ReadPosRankSum=1.71;SOR=0.836;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,36:60:99:900,0,499
chr5	70840433	rs279290	A	G	1155.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=36;ExcessHet=3.9794;FS=1.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.04;ReadPosRankSum=1.21;SOR=1.106;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:501,0,521
chr5	70840543	.	AAAAAATAC	A	52.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.501e+00;DP=10;ExcessHet=3.0103;FS=4.228;MQ=60.00;MQRankSum=0.00;QD=5.20;ReadPosRankSum=0.623;SOR=0.061;VQSLOD=5.06;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,2:10:60:0|1:70840543_AAAAAATAC_A:60,0,776:70840543
chr5	70840564	.	G	A	64.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=12.92;ReadPosRankSum=-8.420e-01;SOR=0.061;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:72:0|1:70840543_AAAAAATAC_A:72,0,507:70840543
chr5	70845140	rs116106096	T	C	289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=37;ExcessHet=3.0103;FS=1.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.82;ReadPosRankSum=-1.444e+00;SOR=0.334;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,12:37:99:298,0,714
chr5	70848782	rs468158	G	A	131	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=0.967;SOR=1.609;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:65,0,32
chr5	70849021	rs469039	G	T	1442.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=-7.000e-02;SOR=0.757;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,30:53:99:792,0,493
chr5	70852611	rs467620	G	A	729.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.645;DB;DP=30;ExcessHet=3.9794;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.57;ReadPosRankSum=1.28;SOR=1.179;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:362,0,549
chr5	70853022	rs6872671	A	G	524.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.08;SOR=2.147;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr5	70858194	rs277941	C	T	1824.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.172;DB;DP=31;ExcessHet=3.9794;FS=1.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=0.534;SOR=0.552;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:325,0,411
chr5	70858342	rs115185087	A	G	1387.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=52;ExcessHet=3.9794;FS=3.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.765;SOR=0.584;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,31:52:99:808,0,505
chr5	70858775	rs145488287	A	G	413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.214e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.75;ReadPosRankSum=-2.018e+00;SOR=0.622;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,13:19:99:422,0,187
chr5	70860493	rs277944	T	C	1817.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.490e-01;DB;DP=63;ExcessHet=3.9794;FS=2.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.808;SOR=0.526;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,30:63:99:693,0,809
chr5	70862059	rs185733	C	T	331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=11;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=0.723;SOR=0.157;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:215,0,144
chr5	70883136	rs11746722	A	G	2225.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.78;SOR=1.402;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:598,54,0
chr5	70888665	.	GT	G	114.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e-01;DP=27;ExcessHet=6.9897;FS=0.000;MQ=59.84;MQRankSum=0.00;QD=1.60;ReadPosRankSum=0.700;SOR=0.736;VQSLOD=5.20;culprit=QD	GT:AD:DP:GQ:PL	0/1:23,4:27:18:18,0,437
chr5	70888918	rs13173723	T	A	77.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.890e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.05;ReadPosRankSum=-6.550e-01;SOR=0.770;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:85:85,0,220
chr5	70892027	rs4062875	GATTAAGT	G	1702.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.721;DB;DP=20;ExcessHet=3.9794;FS=2.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-1.570e-01;SOR=1.332;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:338,0,869
chr5	70922616	rs12516456	G	A	5373.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=2.043;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1447,129,0
chr5	70927686	rs277979	C	T	53.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.91;ReadPosRankSum=-4.310e-01;SOR=0.307;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,139
chr5	70927856	rs277980	G	A	2598.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740e-01;DB;DP=80;ExcessHet=3.9794;FS=2.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=0.699;SOR=0.973;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,33:80:99:837,0,1289
chr5	70928083	rs277981	C	T	1986.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=52;ExcessHet=3.9794;FS=0.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.42;ReadPosRankSum=1.33;SOR=0.582;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,33:52:99:931,0,481
chr5	70930966	rs277984	A	G	7861.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=120;ExcessHet=3.9794;FS=1.736;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.65;ReadPosRankSum=0.624;SOR=0.599;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,65:120:99:1711,0,1341
chr5	70931263	rs277985	G	A	684.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.78;ReadPosRankSum=1.04;SOR=2.400;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:103,0,101
chr5	70931883	rs1553314	G	A	3341.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.45;SOR=2.478;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:709,69,0
chr5	70932002	rs7444180	G	A	9626.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.99;SOR=0.950;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2740,296,0
chr5	70932170	rs7444232	G	T	2643.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.89;SOR=4.265;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:62:714,62,0
chr5	70936643	rs277936	C	G	264.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:77,0,61
chr5	70939437	rs7379830	G	A	2862.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.80;SOR=8.526;VQSLOD=24.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:765,57,0
chr5	70941891	rs70992994	T	TA	268.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.89;ReadPosRankSum=1.38;SOR=1.179;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:4:72,4,0
chr5	70945075	rs10064079	A	G	6751.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.972;DB;DP=85;ExcessHet=3.0103;FS=0.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=-5.800e-02;SOR=0.796;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2699,255,0
chr5	70946113	rs169406	G	C	2235.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.470e-01;DB;DP=36;ExcessHet=3.9794;FS=0.970;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.12;ReadPosRankSum=0.810;SOR=0.948;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,20:36:99:0|1:70946113_G_C:743,0,806:70946113
chr5	70946123	rs182191	G	A	2209.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.260e-01;DB;DP=33;ExcessHet=3.9794;FS=1.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.31;ReadPosRankSum=0.779;SOR=0.984;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,18:33:99:0|1:70946113_G_C:711,0,787:70946113
chr5	70948263	rs6875115	C	T	379.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.64;ReadPosRankSum=1.38;SOR=2.670;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	70948385	rs6888301	T	G	1997.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.36;ReadPosRankSum=-4.730e-01;SOR=0.649;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:779,69,0
chr5	70948654	rs2242372	G	A	908.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.682;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=0.389;SOR=0.476;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:35:349,35,0
chr5	70952506	rs7443786	A	G	4200.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.301e+00;DB;DP=58;ExcessHet=3.0103;FS=3.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=-7.000e-03;SOR=0.412;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1701,174,0
chr5	71015503	rs2239670	A	G	2181.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=3.830;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:505,39,0
chr5	71016481	rs41271753	A	G	1917.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=84;ExcessHet=3.9794;FS=0.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-5.880e-01;SOR=0.756;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,34:84:99:837,0,1065
chr5	71403273	rs3112401	T	C	1042.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.75;DB;DP=26;ExcessHet=3.9794;FS=3.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.43;ReadPosRankSum=0.639;SOR=1.424;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:513,0,372
chr5	71403306	rs3112402	T	A	3701.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.41;SOR=4.362;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1360,105,0
chr5	71411718	rs1531312	T	C	1859.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.11;DB;DP=16;ExcessHet=3.0103;FS=5.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.21;ReadPosRankSum=1.10;SOR=2.221;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:667,48,0
chr5	71411876	rs1531314	C	T	1487.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=13;ExcessHet=3.0103;FS=4.292;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=1.77;SOR=1.875;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:505,39,0
chr5	71412373	rs1466343	A	G	6524.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.480;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=0.032;SOR=0.737;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2163,198,0
chr5	71482595	rs17301945	T	C	1143.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.976;DB;DP=148;ExcessHet=3.0103;FS=0.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.72;ReadPosRankSum=4.000e-03;SOR=0.780;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:97,51:148:99:1152,0,2397
chr5	71488904	rs7736611	C	T	592.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=24;ExcessHet=3.9794;FS=1.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.544;SOR=0.446;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:214,0,337
chr5	71488999	rs114863966	G	A	720.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=48;ExcessHet=3.0103;FS=2.479;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.01;ReadPosRankSum=2.29;SOR=0.392;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,28:48:99:729,0,426
chr5	71489169	.	C	CT	656.10	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=2.26;SOR=1.609;VQSLOD=6.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,6:13:48:48,0,110
chr5	71490962	rs1866374	A	G	3409.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.079e+00;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=-7.760e-01;SOR=0.666;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,23:44:99:541,0,549
chr5	71496419	rs3828616	A	G	147.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=0.976;SOR=0.307;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:156,0,326
chr5	71519664	rs3209157	C	T	2182.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=1.418;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2199,209,0
chr5	71522125	rs9293821	A	T	3419.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=1.871;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:900,84,0
chr5	71524163	rs10942927	A	T	2852.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.054e+00;DB;DP=70;ExcessHet=1.5490;FS=2.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=0.552;SOR=0.906;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2068,209,0
chr5	71528110	rs3213894	T	C	806.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=2.494;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:823,72,0
chr5	71739546	rs4267851	C	G	4829.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=2.093;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1643,153,0
chr5	71743024	rs10043295	G	C	8503.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.420e+00;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.17;ReadPosRankSum=-3.720e-01;SOR=0.695;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3626,318,0
chr5	71743322	rs10043368	G	A	1587.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=43;ExcessHet=6.9897;FS=4.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=0.232;SOR=1.143;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:585,0,671
chr5	72112421	rs34648	T	C	4111.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.68;SOR=2.226;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:96:1|1:72112421_T_C:1406,96,0:72112421
chr5	72112430	rs34647	C	G	4542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.89;SOR=1.925;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,37:37:99:1|1:72112421_T_C:1573,114,0:72112421
chr5	72144005	rs34651	C	T	3288.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.013e+00;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.50;ReadPosRankSum=1.14;SOR=0.500;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1861,147,0
chr5	72147269	rs34655	A	G	5089.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.868;DB;DP=95;ExcessHet=1.5490;FS=3.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.66;SOR=0.486;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,94:95:99:2930,243,0
chr5	72151807	rs41271135	G	A	225.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.438e+00;DB;DP=49;ExcessHet=3.0103;FS=1.228;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.60;ReadPosRankSum=-5.420e-01;SOR=0.478;VQSLOD=22.09;culprit=QD	GT:AD:DP:GQ:PL	0/1:35,14:49:99:234,0,940
chr5	72151858	rs34660	T	A	1321.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.767;DB;DP=21;ExcessHet=1.5490;FS=2.950;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.080;SOR=1.302;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:691,63,0
chr5	72174432	rs266435	C	G	1514.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.046;DB;DP=40;ExcessHet=1.5490;FS=4.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.47;ReadPosRankSum=0.930;SOR=1.362;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1344,120,0
chr5	72182857	rs4704045	A	G	674.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=13;ExcessHet=3.9794;FS=4.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.248;SOR=2.004;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:60:275,0,60
chr5	72183850	rs7720717	A	G	210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DB;DP=44;ExcessHet=3.0103;FS=1.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.78;ReadPosRankSum=0.448;SOR=1.035;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,11:44:99:219,0,898
chr5	72184098	rs17606	C	T	3408.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.901;DB;DP=81;ExcessHet=1.5490;FS=1.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.94;ReadPosRankSum=1.05;SOR=0.576;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,79:81:99:2304,193,0
chr5	72201039	rs150320545	T	TA	37.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.54;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=5.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:46:46,0,77
chr5	72201058	rs250518	G	A	201.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=-4.310e-01;SOR=0.446;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:70:139,0,70
chr5	72347090	rs7712673	A	T	379.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=33;ExcessHet=3.0103;FS=1.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.216;SOR=0.423;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:388,0,420
chr5	72347223	rs7712838	A	G	763.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.840e-01;DB;DP=70;ExcessHet=3.0103;FS=1.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.047;SOR=0.941;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,34:70:99:772,0,840
chr5	72348030	rs62362195	G	A	54.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.76;ReadPosRankSum=0.366;SOR=0.892;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:63:63,0,143
chr5	72349724	rs34754280	TAA	T	61.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=0.674;SOR=0.446;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,113
chr5	72364673	rs470926	A	G	637.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.199e+00;DB;DP=27;ExcessHet=3.9794;FS=6.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=0.025;SOR=0.177;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:413,0,301
chr5	72378703	rs11313621	AT	A	469.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.650e-01;DB;DP=24;ExcessHet=6.9897;FS=6.766;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.91;ReadPosRankSum=0.954;SOR=0.191;VQSLOD=5.69;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,16:24:99:316,0,124
chr5	72419041	rs7448965	T	C	1120.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=14;ExcessHet=3.0103;FS=11.319;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.35;ReadPosRankSum=-8.160e-01;SOR=1.696;VQSLOD=17.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:449,42,0
chr5	72419267	rs638333	T	C	2940.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=113;ExcessHet=3.9794;FS=3.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=-1.230e-01;SOR=0.938;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,68:113:99:1785,0,920
chr5	72419410	rs7731777	A	G	20302.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=197;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.39;SOR=0.886;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,197:197:99:6362,591,0
chr5	72742882	rs2972191	T	C	3380.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.660e+00;DB;DP=61;ExcessHet=3.9794;FS=0.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=1.03;SOR=0.629;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1784,182,0
chr5	72795369	rs819564	T	G	356.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.36;SOR=4.615;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	72798502	rs200370518	GTT	G	12334.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.611e+00;DB;DP=111;ExcessHet=3.0103;FS=8.384;MQ=60.00;MQRankSum=0.00;QD=28.45;ReadPosRankSum=0.205;SOR=1.029;VQSLOD=4.12;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,108:111:99:3952,334,0
chr5	72798724	rs347233	T	G	845.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=19;ExcessHet=3.9794;FS=1.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=0.744;SOR=0.493;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:400,0,240
chr5	72800408	rs703882	G	C	1130.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.719e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=-2.290e-01;SOR=1.828;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:386,33,0
chr5	72800863	rs59856963	C	CT	2049.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-01;DB;DP=49;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.34;ReadPosRankSum=-4.970e-01;SOR=0.672;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,38:49:99:727,0,122
chr5	72850282	rs343104	A	G	6837.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=32.41;SOR=1.713;VQSLOD=5.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2425,233,0
chr5	72850395	rs343105	T	C	1170.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.32;SOR=7.054;VQSLOD=23.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:32:356,32,0
chr5	72851535	rs819584	A	T	1741.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=7.476;VQSLOD=24.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:382,27,0
chr5	72858918	rs343106	C	T	285.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.99;SOR=4.407;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:109,9,0
chr5	72872766	rs1220622	C	T	9420.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.13;SOR=1.964;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2585,231,0
chr5	72873925	rs7443182	G	A	3973.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.253e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=-4.190e-01;SOR=0.816;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1684,153,0
chr5	72874801	rs12652195	G	A	1860.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.943e+00;DB;DP=34;ExcessHet=1.5490;FS=2.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=-3.030e-01;SOR=1.211;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1194,102,0
chr5	72875635	rs10942676	C	T	450.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.750e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.70;ReadPosRankSum=-5.220e-01;SOR=1.609;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr5	72980869	rs10755296	G	C	5874.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.56;SOR=2.089;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1566,147,0
chr5	73069581	rs4704097	A	G	635.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.012e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=-3.930e-01;SOR=1.893;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:150,0,214
chr5	73090089	rs12653477	T	G	3546.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=60;ExcessHet=6.9897;FS=2.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-6.110e-01;SOR=0.851;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:697,0,845
chr5	73090165	rs10683146	A	AGTT	3987.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.650;DB;DP=55;ExcessHet=6.9897;FS=1.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=0.132;SOR=0.711;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,20:55:99:747,0,1372
chr5	73090261	rs7716253	T	C	2250.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.003e+00;DB;DP=55;ExcessHet=6.9897;FS=0.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.37;ReadPosRankSum=-2.900e-02;SOR=0.636;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,20:55:99:465,0,871
chr5	73091126	rs2973549	T	A	1170.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.800e-01;DB;DP=34;ExcessHet=6.9897;FS=0.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.68;ReadPosRankSum=0.177;SOR=0.614;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:280,0,579
chr5	73091228	rs2973548	C	T	1819.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.613;DB;DP=43;ExcessHet=6.9897;FS=0.575;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.90;ReadPosRankSum=0.832;SOR=0.613;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:371,0,649
chr5	73109735	rs76466396	TA	T	42.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=14.26;SOR=2.833;VQSLOD=0.745;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:58,9,0
chr5	73142296	rs2973571	C	T	2534.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.530e-01;DB;DP=52;ExcessHet=6.9897;FS=0.631;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.533;SOR=0.593;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,35:52:99:940,0,443
chr5	73144845	rs2973568	A	G	1658.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094e+00;DB;DP=54;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=0.472;SOR=0.743;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,23:54:99:451,0,677
chr5	73148481	rs2973566	G	A	2286.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.370e-01;DB;DP=65;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-3.600e-01;SOR=0.694;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,33:65:99:992,0,863
chr5	73153389	rs10543482	TACAC	T	3418.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=36;ExcessHet=3.9794;FS=1.981;MQ=60.00;MQRankSum=0.00;QD=29.22;ReadPosRankSum=0.573;SOR=1.014;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,22:36:99:882,0,662
chr5	73153754	rs2973563	A	C	856.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=6;ExcessHet=3.9794;FS=3.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=0.817;SOR=0.223;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:151,0,64
chr5	73154250	rs10634993	C	CCTCA	1763.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.207;DB;DP=14;ExcessHet=3.9794;FS=4.999;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.50;ReadPosRankSum=1.32;SOR=0.164;VQSLOD=6.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:273,0,418
chr5	73160730	rs1014550	G	A	3029.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.750e-01;DB;DP=85;ExcessHet=6.9897;FS=2.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=0.405;SOR=0.528;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,44:85:99:1144,0,1127
chr5	73160775	rs1979551	A	G	2115.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.130e-01;DB;DP=54;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.75;ReadPosRankSum=-1.157e+00;SOR=0.737;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:839,0,613
chr5	73161558	rs2973559	C	A	72.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=2.303;VQSLOD=21.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr5	73163831	rs2931423	C	T	2162.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.540e+00;DB;DP=45;ExcessHet=6.9897;FS=9.204;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.352;SOR=0.739;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,22:45:99:513,0,675
chr5	73163861	rs2931422	C	T	5521.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=0.705;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1357,117,0
chr5	73163965	rs2973558	C	A	2432.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=61;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=-5.830e-01;SOR=0.663;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,21:61:99:490,0,966
chr5	73164138	rs34777247	AT	A	437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=13;ExcessHet=6.9897;FS=5.870;MQ=60.00;MQRankSum=0.00;QD=8.59;ReadPosRankSum=0.904;SOR=2.387;VQSLOD=4.04;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:13:99:161,0,133
chr5	73164206	rs2973557	C	A	234.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=-2.410e-01;SOR=0.293;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:73,0,64
chr5	73165730	rs143184703	C	CA	301.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.647;DB;DP=2;ExcessHet=6.9897;FS=3.358;MQ=60.00;MQRankSum=0.00;QD=23.23;ReadPosRankSum=0.524;SOR=2.030;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:73165730_C_CA:39,0,40:73165730
chr5	73165740	rs66675411	C	A	424.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=6.9897;FS=3.203;MQ=60.00;MQRankSum=0.00;QD=18.48;ReadPosRankSum=0.425;SOR=1.885;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:70:0|1:73165730_C_CA:70,0,71:73165730
chr5	73178550	rs2973528	T	G	527.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=-8.420e-01;SOR=0.922;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:182,0,130
chr5	73189145	rs2973529	G	A	1194.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.37;ReadPosRankSum=0.289;SOR=0.733;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,23:60:99:600,0,949
chr5	73190119	rs2973530	T	A	730.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.108;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=0.732;SOR=0.793;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:94:94,0,225
chr5	73190646	rs2973531	G	A	237.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=1.01;SOR=1.179;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:68:107,0,68
chr5	73196761	rs3749641	G	A	268.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=7;ExcessHet=6.9897;FS=2.696;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.00;SOR=0.136;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:63:155,0,63
chr5	73196810	rs3749640	C	T	381.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.223e+00;DB;DP=13;ExcessHet=3.9794;FS=4.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=1.08;SOR=0.191;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:219,0,139
chr5	73196843	rs3749639	A	T	924.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.487;DB;DP=19;ExcessHet=6.9897;FS=0.941;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=1.13;SOR=0.522;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:239,0,249
chr5	73197185	rs434065	A	C	3106.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.531;DB;DP=70;ExcessHet=6.9897;FS=1.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-4.720e-01;SOR=0.804;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,38:70:99:943,0,752
chr5	73197200	rs384927	G	A	2799.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.042e+00;DB;DP=66;ExcessHet=6.9897;FS=4.994;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=-2.600e-01;SOR=1.021;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,34:66:99:821,0,735
chr5	73339114	rs285599	C	T	1898.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.610e-01;DB;DP=87;ExcessHet=3.9794;FS=0.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.78;ReadPosRankSum=2.06;SOR=0.612;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,42:87:99:981,0,1110
chr5	73930442	rs300240	C	T	5303.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=1.238;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1657,162,0
chr5	73930751	rs300239	C	T	13231.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.19;SOR=0.830;VQSLOD=20.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4028,365,0
chr5	73931246	rs442425	T	C	20255.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MQ=59.92;POSITIVE_TRAIN_SITE;QD=32.46;SOR=0.787;VQSLOD=4.97;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,201:201:99:6301,603,0
chr5	73932315	rs9176	T	C	4364.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.37;SOR=1.252;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1268,113,0
chr5	73932534	rs379146	T	G	257.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.799;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=1.18;SOR=0.693;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:59:266,0,59
chr5	73932551	rs36098062	TA	T	250.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.908;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.29;ReadPosRankSum=-4.620e-01;SOR=0.963;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:133,18,0
chr5	73981270	rs820878	T	C	62331.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=700;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=30.78;SOR=0.953;VQSLOD=4.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,700:700:99:20727,2097,0
chr5	73985107	rs41271747	T	A	334.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.738;DB;DP=20;ExcessHet=3.0103;FS=7.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=0.380;SOR=3.056;VQSLOD=16.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:343,0,238
chr5	73985534	rs820889	T	C	656.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.437;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=-1.242e+00;SOR=1.931;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:179,12,0
chr5	73989297	rs820877	C	T	219.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.33;SOR=3.912;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr5	73992406	rs1696979	T	G	1229.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.965e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.75;ReadPosRankSum=1.00;SOR=2.636;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:222,0,137
chr5	73992609	rs1665894	G	A	7532.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.845e+00;DB;DP=77;ExcessHet=3.0103;FS=2.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=-1.987e+00;SOR=0.576;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2196,230,0
chr5	74000916	.	CA	C	318.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DP=4;ExcessHet=3.0103;FS=0.000;MQ=59.36;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.92;ReadPosRankSum=-6.740e-01;SOR=2.737;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:2:51,2,0
chr5	74009327	rs17561000	A	G	772.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.500e-02;DB;DP=52;ExcessHet=3.0103;FS=1.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=-7.500e-02;SOR=0.935;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,31:52:99:781,0,499
chr5	74016871	rs141358769	C	CAATCT	379.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.29;ReadPosRankSum=1.46;SOR=1.179;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:388,0,315
chr5	74017499	rs1048167	C	T	2754.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=97;ExcessHet=3.9794;FS=0.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=-1.390e+00;SOR=0.636;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,46:97:99:1145,0,1198
chr5	74021846	rs5868753	TACTCAA	T	4482.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.477;DB;DP=61;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.48;ReadPosRankSum=1.75;SOR=0.723;VQSLOD=6.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,28:61:99:1077,0,2418
chr5	74028752	rs10572369	GACACAC	G,GAC	3144.50	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.413e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.71;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.66;ReadPosRankSum=-1.156e+00;SOR=1.565;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,12,12:29:99:1030,302,231,390,0,319
chr5	74034245	rs7732843	G	A	2671.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DB;DP=77;ExcessHet=3.9794;FS=1.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.688;SOR=0.844;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:964,0,988
chr5	74037386	rs16872235	T	A	1481.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=49;ExcessHet=3.9794;FS=1.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=-4.220e-01;SOR=0.558;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,27:49:99:690,0,460
chr5	74041329	rs6453079	C	G	186.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=1.15;SOR=1.179;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:25:119,0,25
chr5	74041786	rs150747026	A	AT	910.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=28;ExcessHet=3.9794;FS=2.213;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.79;ReadPosRankSum=0.713;SOR=1.017;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:438,0,439
chr5	74046656	rs6873998	A	G	130.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=-8.420e-01;SOR=0.693;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	74047436	rs16872242	G	A	650.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.76;DB;DP=14;ExcessHet=3.9794;FS=6.283;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=1.76;SOR=2.833;VQSLOD=18.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:241,0,199
chr5	74054595	rs10515191	A	G	6941.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=111;ExcessHet=1.5490;FS=0.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.01;ReadPosRankSum=2.10;SOR=0.633;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,61:111:99:1819,0,1322
chr5	74054792	rs59475923	AG	A	2747.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.143;DB;DP=76;ExcessHet=3.9794;FS=0.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.75;ReadPosRankSum=0.918;SOR=0.592;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,43:76:99:1375,0,1002
chr5	74055209	rs957680	T	C	1979.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.290e-01;DB;DP=79;ExcessHet=3.9794;FS=3.843;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.325;SOR=0.438;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,43:79:99:1042,0,860
chr5	74063154	rs1043968	C	G	3132.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-02;DB;DP=72;ExcessHet=1.5490;FS=0.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=0.197;SOR=0.815;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,35:72:99:814,0,881
chr5	74063250	rs116165962	T	C	2035.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=68;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=0.466;SOR=0.683;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,33:68:99:860,0,846
chr5	74063268	rs79669494	G	T	1751.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.096;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=1.65;SOR=0.712;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:755,0,690
chr5	74069863	rs6874609	A	G	4502.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.300e-02;DB;DP=98;ExcessHet=1.5490;FS=4.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-6.470e-01;SOR=0.430;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,44:98:99:1005,0,1324
chr5	74072339	rs58655773	G	GA	526.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.100e-01;DB;DP=20;ExcessHet=1.5490;FS=3.176;MQ=60.00;MQRankSum=0.00;QD=15.97;ReadPosRankSum=0.232;SOR=0.812;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,8:20:99:166,0,300
chr5	74097381	rs73116717	A	C	712.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.640e-01;DB;DP=57;ExcessHet=3.0103;FS=7.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-7.760e-01;SOR=0.446;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,30:57:99:721,0,710
chr5	74134627	rs74432162	G	A	244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.405e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.487;SOR=0.495;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:253,0,136
chr5	74134654	rs57202395	C	T	242.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=15;ExcessHet=3.9794;FS=4.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=1.95;SOR=1.565;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:47:47,0,352
chr5	74134742	rs16872323	T	C	1080.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.308;DB;DP=65;ExcessHet=3.9794;FS=1.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.64;ReadPosRankSum=1.52;SOR=0.931;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,21:65:99:399,0,1133
chr5	74652059	rs17238596	C	T	55.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.22;ReadPosRankSum=1.83;SOR=1.179;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:64:64,0,117
chr5	74931198	rs34419032	TA	T	291.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.42;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr5	74931333	rs34339	G	T	694.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.04;SOR=5.784;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr5	74954901	rs5868779	T	TG	1114.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.85;ReadPosRankSum=0.374;SOR=2.964;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:404,30,0
chr5	74962470	rs79141566	T	A	98.62	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.57;ReadPosRankSum=-2.720e-01;SOR=1.270;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,1:1:3:35,3,0
chr5	74965122	rs34358	G	A	3301.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.140e-01;DB;DP=69;ExcessHet=1.5490;FS=2.624;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.59;ReadPosRankSum=-7.000e-02;SOR=0.473;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2213,207,0
chr5	74980830	rs113216064	C	T	76.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.431;SOR=0.105;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:62:82,0,62
chr5	74981322	rs17563610	A	T	1027.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.837;DB;DP=42;ExcessHet=3.9794;FS=3.460;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.762;SOR=0.346;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,20:42:99:519,0,499
chr5	74984818	rs17563686	A	T	1428.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.941e+00;DB;DP=49;ExcessHet=3.9794;FS=1.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=1.21;SOR=0.497;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,25:49:99:611,0,721
chr5	74986045	rs17563700	A	G	421.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=8;ExcessHet=3.9794;FS=7.225;MQ=58.79;MQRankSum=0.887;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=0.703;SOR=3.056;VQSLOD=-4.088e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,5:8:62:199,0,62
chr5	74986481	rs4704230	T	C	1195.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,246
chr5	74988336	rs888788	C	T	955.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=31;ExcessHet=3.9794;FS=0.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-7.530e-01;SOR=0.805;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:341,0,561
chr5	74988369	rs888789	A	G	2148.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.000e-02;DB;DP=20;ExcessHet=3.0103;FS=2.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=0.653;SOR=1.292;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:647,60,0
chr5	74990348	rs2307115	T	C	253.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.414;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=-4.140e-01;SOR=0.512;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:168,0,173
chr5	74998334	rs17563863	G	A	185.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680e-01;DB;DP=11;ExcessHet=3.9794;FS=2.762;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.28;ReadPosRankSum=0.366;SOR=1.536;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:132,0,224
chr5	74998426	rs17649248	G	A	828.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=36;ExcessHet=3.9794;FS=3.663;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.476;SOR=1.234;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,17:36:99:359,0,463
chr5	75003678	rs2307111	T	C	5362.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.550e-01;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.16;ReadPosRankSum=-1.683e+00;SOR=0.712;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,37:63:99:806,0,541
chr5	75008193	rs2047059	T	C	2552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=59;ExcessHet=6.9897;FS=3.536;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-7.890e-01;SOR=0.477;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,29:59:99:678,0,765
chr5	75427518	rs1423099	C	T	3160.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.99;SOR=1.906;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1324,111,0
chr5	75427935	rs10070440	G	A	15002.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.76;SOR=0.862;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,243:243:99:7752,727,0
chr5	75505950	rs4703699	G	A	978.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.17;SOR=5.136;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:285,21,0
chr5	75591710	rs2270927	C	G	1945.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.089;DB;DP=74;ExcessHet=3.9794;FS=0.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=0.634;SOR=0.763;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,40:74:99:1014,0,796
chr5	75594743	rs31244	G	A	628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.812e+00;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=-2.560e-01;SOR=0.721;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,28:51:99:637,0,581
chr5	75597494	rs246816	A	G	1115.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.57;ReadPosRankSum=1.23;SOR=0.859;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:395,0,226
chr5	75871350	rs16873483	A	G	38	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.00;SOR=0.693;VQSLOD=16.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	75884734	rs1131232	G	A	3144.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.254;DB;DP=60;ExcessHet=1.5490;FS=1.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=-1.470e+00;SOR=0.902;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,34:60:99:820,0,572
chr5	75884950	rs35711348	A	AAC	1608.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.60;POSITIVE_TRAIN_SITE;QD=25.77;SOR=4.977;VQSLOD=6.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,13:13:39:577,39,0
chr5	75886168	rs2270907	A	G	717.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=-1.090e+00;SOR=1.528;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:256,0,336
chr5	75888788	rs3736394	G	A	2037.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.558e+00;DB;DP=42;ExcessHet=1.5490;FS=2.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.90;ReadPosRankSum=1.18;SOR=0.386;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,25:42:99:540,0,426
chr5	75893553	rs34538847	T	TG	161.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=0.524;SOR=1.402;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,3:9:80:80,0,187
chr5	75904664	rs62362037	G	A	105.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.48;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:113,0,32
chr5	75904811	rs3822529	C	G	2888.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=-1.748e+00;SOR=0.631;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:575,0,421
chr5	75907065	rs3797390	A	G	729.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=27;ExcessHet=3.9794;FS=1.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=0.732;SOR=0.520;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:401,0,373
chr5	75913305	rs2069685	T	C	469.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.37;ReadPosRankSum=-1.415e+00;SOR=0.892;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:141,0,140
chr5	75914003	rs2069700	T	C	1365.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.160e+00;DB;DP=104;ExcessHet=3.0103;FS=0.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-6.500e-02;SOR=0.699;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,54:104:99:1374,0,1247
chr5	75918738	rs924592	C	T	354.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=4.615;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:243,18,0
chr5	75923141	rs2455221	G	A	2582.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.36;ReadPosRankSum=0.339;SOR=0.872;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1194,111,0
chr5	75923285	rs2431351	C	T	6987.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.30;DB;DP=67;ExcessHet=3.0103;FS=1.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.48;ReadPosRankSum=-2.660e-01;SOR=0.558;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,67:67:99:1|1:75923285_C_T:3013,205,0:75923285
chr5	75923294	rs2431352	T	G	9201.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=0.875;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,68:68:99:1|1:75923285_C_T:2999,205,0:75923285
chr5	75923307	rs2909888	A	G	6867.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=0.784;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2041,207,0
chr5	75923393	rs2431353	T	C	3567.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.374e+00;DB;DP=43;ExcessHet=3.0103;FS=0.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.02;ReadPosRankSum=0.963;SOR=0.573;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1281,128,0
chr5	75923459	rs2455222	G	A	1950.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.10;DB;DP=14;ExcessHet=3.0103;FS=3.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=0.397;SOR=1.516;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:536,42,0
chr5	75923494	rs2431354	C	T	1184.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.550e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.95;MQRankSum=0.674;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=31.18;ReadPosRankSum=0.431;SOR=2.303;VQSLOD=-1.617e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr5	75924472	rs2455225	A	G	8312.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.108e+00;DB;DP=108;ExcessHet=3.0103;FS=5.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=0.058;SOR=0.406;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,108:108:99:3021,323,0
chr5	75927509	rs429071	A	G	390.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.54;ReadPosRankSum=-4.310e-01;SOR=2.670;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	75927595	rs431160	C	G	1958.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.120e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=1.20;SOR=0.635;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:649,48,0
chr5	75927938	rs441157	A	T	1887.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.97;ReadPosRankSum=0.046;SOR=1.058;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:470,39,0
chr5	75932717	rs2455229	G	A	221.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=3.912;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	75932869	rs2910819	C	T	2964.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=1.23;SOR=0.800;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1113,119,0
chr5	75932965	rs2455230	G	C	4243.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DB;DP=50;ExcessHet=3.0103;FS=0.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=-2.062e+00;SOR=0.634;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1545,149,0
chr5	75933097	rs2937415	C	T	1731.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.964;DB;DP=19;ExcessHet=3.0103;FS=1.529;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.93;ReadPosRankSum=-6.750e-01;SOR=1.170;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:627,57,0
chr5	75936944	rs457821	G	A	3952.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.753e+00;DB;DP=58;ExcessHet=3.0103;FS=0.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.01;ReadPosRankSum=0.849;SOR=0.576;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1794,174,0
chr5	75937052	rs590674	A	T	868.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.139e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.03;ReadPosRankSum=0.901;SOR=1.911;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:232,18,0
chr5	75948269	rs111555483	T	TTTA	1416.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.030e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.56;ReadPosRankSum=0.849;SOR=0.910;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:33:459,33,0
chr5	75948474	rs2252231	T	C	5217.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.67;DB;DP=52;ExcessHet=3.0103;FS=4.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.97;ReadPosRankSum=1.93;SOR=0.434;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1700,156,0
chr5	75948650	rs2431363	A	G	7275.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=89;ExcessHet=3.0103;FS=1.034;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=-5.590e-01;SOR=0.605;VQSLOD=6.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2689,267,0
chr5	75948685	rs2431362	G	A	6496.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.37;ReadPosRankSum=-1.125e+00;SOR=0.706;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2462,242,0
chr5	75948799	rs2455215	T	C	3900.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=37;ExcessHet=3.0103;FS=1.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=0.524;SOR=0.537;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1237,111,0
chr5	75948848	rs2432188	G	C	2095.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.79;DB;DP=19;ExcessHet=3.0103;FS=3.315;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=0.380;SOR=1.488;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:723,57,0
chr5	75949805	rs457745	T	A	344.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.51;SOR=4.615;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	75949844	rs457127	C	A	616.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.21;SOR=4.174;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	75949876	rs466393	T	C	759.78	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.24;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.14;ReadPosRankSum=0.703;SOR=1.609;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:208,18,0
chr5	75950193	rs462307	A	G	1930.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.09;SOR=4.003;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:555,42,0
chr5	75950707	rs465731	G	A	4167.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=1.798;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1334,129,0
chr5	75950997	rs459846	G	A	5545.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.395;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1858,173,0
chr5	75951088	rs459052	A	T	2089.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.025e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.26;ReadPosRankSum=1.77;SOR=1.371;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:75951088_A_T:872,60,0:75951088
chr5	75951096	rs5868834	ATT	A	2403.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.83;SOR=4.294;VQSLOD=6.42;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:75951088_A_T:893,60,0:75951088
chr5	75951118	rs455933	G	A	1831.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=5.186;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:75951088_A_T:675,45,0:75951088
chr5	75954096	rs2287930	G	A	274.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.85;SOR=4.174;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr5	75954537	rs4704347	C	T	796.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.30;DB;DP=9;ExcessHet=3.0103;FS=4.661;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=0.398;SOR=3.014;VQSLOD=19.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
chr5	75954577	rs4704348	A	G	566.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.47;ReadPosRankSum=-1.350e-01;SOR=2.833;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:197,15,0
chr5	75960825	rs253092	G	C	1529.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=24;ExcessHet=3.9794;FS=1.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.50;ReadPosRankSum=1.47;SOR=1.329;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:443,0,323
chr5	75960865	rs253093	T	C	3692.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.27;SOR=2.079;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1169,105,0
chr5	75961154	rs253094	A	G	958.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=12;ExcessHet=3.9794;FS=2.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.40;ReadPosRankSum=0.414;SOR=1.713;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:131,0,251
chr5	75964702	rs3764935	G	A	1199.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=30;ExcessHet=3.9794;FS=7.558;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.946;SOR=2.494;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:695,0,242
chr5	75967464	.	G	C	31.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.79;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:75967464_G_C:39,0,231:75967464
chr5	75967467	.	C	A	30.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.44;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:75967464_G_C:39,0,231:75967464
chr5	75967468	.	A	G	30.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.44;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:75967464_G_C:39,0,231:75967464
chr5	75967470	.	A	G	30.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.44;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:75967464_G_C:39,0,231:75967464
chr5	75967862	rs35919076	A	G	240.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.419;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=1.07;SOR=0.569;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:57:164,0,57
chr5	75969747	rs41271836	A	G	2235.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=66;ExcessHet=3.9794;FS=3.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.098;SOR=0.426;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,39:66:99:1063,0,731
chr5	76002914	rs7717826	C	T	1040.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.66;DB;DP=9;ExcessHet=3.0103;FS=3.252;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.13;ReadPosRankSum=-4.450e-01;SOR=2.115;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:360,27,0
chr5	76003254	rs463188	A	T	1773.20	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.094e+00;DB;DP=16;ExcessHet=3.0103;FS=5.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.28;ReadPosRankSum=0.334;SOR=2.376;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:718,48,0
chr5	76003258	rs464494	C	T	1419.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.02;DB;DP=16;ExcessHet=3.9794;FS=1.891;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=0.341;SOR=1.426;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:76003246_A_AT:718,48,0:76003246
chr5	76028124	rs168753	A	T	102.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.423;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.65;ReadPosRankSum=-5.170e-01;SOR=0.754;VQSLOD=22.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,6:22:99:111,0,383
chr5	76114963	rs1529505	C	T	2451.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.560e-01;DB;DP=43;ExcessHet=3.9794;FS=0.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.70;ReadPosRankSum=0.896;SOR=0.883;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:614,0,613
chr5	76115172	rs686868	G	A	913.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=60;ExcessHet=3.0103;FS=2.369;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.22;ReadPosRankSum=-5.400e-01;SOR=1.209;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,30:60:99:922,0,785
chr5	76128521	rs616235	G	A	7340.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=1.900;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2290,206,0
chr5	76129053	rs631465	T	C	10348.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.710e-01;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.82;ReadPosRankSum=0.559;SOR=0.272;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,95:96:99:3124,248,0
chr5	76171063	rs1320309	G	A	2089.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.663;DB;DP=41;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=1.39;SOR=0.727;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,40:41:86:1223,86,0
chr5	76171252	rs1320308	A	C	4642.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.64;DB;DP=97;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=1.23;SOR=0.661;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,96:97:99:2897,249,0
chr5	76173727	rs1320307	G	C	971.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.04;DB;DP=13;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=0.00;SOR=1.819;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:566,39,0
chr5	76259350	rs7728378	T	C	1035.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=19;ExcessHet=6.9897;FS=6.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.17;ReadPosRankSum=-1.144e+00;SOR=1.702;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,7:19:99:1|0:76259348_C_A:207,0,341:76259348
chr5	76326885	rs2278241	G	A	432.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.683e+00;DB;DP=26;ExcessHet=3.0103;FS=3.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.63;ReadPosRankSum=-7.700e-01;SOR=2.584;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:441,0,412
chr5	76332606	rs6453271	C	T	31.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.53;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:29:39,0,29
chr5	76335623	rs35359101	A	C	89.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.385;DB;DP=6;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.88;ReadPosRankSum=-1.036e+00;SOR=0.838;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:98:98,0,105
chr5	76350139	rs56036819	G	A	501.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.86;ReadPosRankSum=1.15;SOR=3.912;VQSLOD=15.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:27:110,0,27
chr5	76351308	rs74848595	C	A	499.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.185;DB;DP=40;ExcessHet=3.0103;FS=1.406;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=-9.250e-01;SOR=1.179;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:508,0,595
chr5	76355287	rs75166826	A	G	834.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=33;ExcessHet=3.9794;FS=4.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.374;SOR=1.387;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:275,0,479
chr5	76358787	rs73764644	T	A	1089.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=28;ExcessHet=3.9794;FS=5.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.024;SOR=1.580;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,18:28:99:572,0,226
chr5	76359024	rs34400049	C	A	352.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.687e+00;DB;DP=26;ExcessHet=3.0103;FS=7.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=1.34;SOR=0.074;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:361,0,396
chr5	76373240	rs2303713	A	G	709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.560e-01;DB;DP=19;ExcessHet=3.9794;FS=2.683;MQ=60.00;MQRankSum=0.00;QD=15.76;ReadPosRankSum=0.712;SOR=0.317;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,9:19:99:0|1:76373240_A_G:348,0,605:76373240
chr5	76373241	rs2303714	G	C	709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.028;DB;DP=19;ExcessHet=3.9794;FS=2.683;MQ=60.00;MQRankSum=0.00;QD=15.76;ReadPosRankSum=0.739;SOR=0.317;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,9:19:99:0|1:76373240_A_G:348,0,605:76373240
chr5	76373865	rs6897542	T	C	121.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.16;SOR=2.833;VQSLOD=20.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr5	76376637	rs2914139	A	G	400.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.420e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=58.68;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.73;ReadPosRankSum=-1.006e+00;SOR=1.911;VQSLOD=0.410;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:320,24,0
chr5	76607627	rs11413850	C	CT	2932.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.19;DB;DP=26;ExcessHet=3.0103;FS=4.276;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=0.347;SOR=2.852;VQSLOD=6.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:78:723,78,0
chr5	76607738	rs113995403	T	C	2722.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.160e-01;DB;DP=87;ExcessHet=3.9794;FS=2.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=0.225;SOR=0.906;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,41:87:99:966,0,1151
chr5	76607930	rs11395504	C	CT	395.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.80;ReadPosRankSum=-3.080e-01;SOR=2.376;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,8:12:14:170,0,14
chr5	76621612	rs4133658	A	T	1689.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.55;SOR=7.476;VQSLOD=24.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:611,45,0
chr5	76645529	rs2306343	G	A	1836.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.62;SOR=3.657;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:543,45,0
chr5	76649504	rs75242216	C	T	174.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=1.38;SOR=2.303;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:24:182,0,24
chr5	76696334	rs3733952	C	T	1368.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.114;DB;DP=36;ExcessHet=1.5490;FS=2.871;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.44;ReadPosRankSum=-1.178e+00;SOR=0.332;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1105,107,0
chr5	76703638	rs2359876	A	G	316.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.61;SOR=4.407;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr5	76704713	rs79008179	G	A	437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.74;MQRankSum=0.974;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=-1.031e+00;SOR=0.861;VQSLOD=0.635;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:33:99:446,0,411
chr5	76704849	rs186753	T	C	4654.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.24;SOR=1.047;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1341,126,0
chr5	76707438	rs35864749	A	T	713.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.309e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=1.58;SOR=0.620;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:307,0,352
chr5	76708987	rs335614	A	G	5214.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=54;ExcessHet=3.0103;FS=2.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.21;ReadPosRankSum=0.572;SOR=0.450;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1677,162,0
chr5	76709249	rs335615	A	T	4482.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.00;SOR=0.928;VQSLOD=18.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1609,180,0
chr5	76709268	rs335616	A	G	5595.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.11;SOR=0.912;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1835,179,0
chr5	76709426	rs2279095	G	T	453.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.191;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.541;SOR=0.770;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:207,0,208
chr5	76714380	rs2242159	C	T	3711.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.93;SOR=3.567;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1023,87,0
chr5	76717583	rs13160107	A	G	1673.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=26;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.547;SOR=0.629;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:371,0,362
chr5	76721938	rs3816609	G	A	108.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.07;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:117,0,28
chr5	76722443	rs40594	G	A	2263.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=55;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=-3.200e-01;SOR=0.735;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,26:55:99:733,0,725
chr5	76729193	rs462581	G	C	497.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.34;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=0.603;SOR=0.593;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,5:19:99:167,0,449
chr5	76733379	rs919224	C	T	227.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.623e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.23;ReadPosRankSum=-1.850e-01;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:236,0,274
chr5	76734084	rs33204	C	T	5420.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850e-01;DB;DP=111;ExcessHet=1.5490;FS=1.907;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=0.634;SOR=0.719;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,57:111:99:1336,0,1317
chr5	76734276	rs80317340	C	A	766.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.689e+00;DB;DP=55;ExcessHet=3.0103;FS=1.109;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=0.253;SOR=0.534;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,29:55:99:775,0,738
chr5	76736907	rs2560076	G	C	812.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.964;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=0.434;SOR=1.609;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:212,0,203
chr5	76747087	rs335609	T	C	1801.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=0.833;SOR=0.803;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:288,0,247
chr5	76749435	rs179815	C	T	769.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.93;ReadPosRankSum=0.00;SOR=3.816;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:113,0,68
chr5	76758706	rs434515	C	T	188.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=3.611;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	76758803	rs426381	T	C	802.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DB;DP=16;ExcessHet=1.5490;FS=6.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=0.709;SOR=2.753;VQSLOD=18.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:186,0,290
chr5	76760495	rs410620	T	C	1622.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=31;ExcessHet=1.5490;FS=3.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-2.000e-02;SOR=1.317;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,17:31:99:493,0,371
chr5	76760657	rs11433376	G	GA	1926.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DB;DP=45;ExcessHet=1.5490;FS=0.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=0.904;SOR=0.903;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,27:45:99:636,0,380
chr5	76785114	rs152952	C	T	363.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.819;SOR=1.765;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:176,0,130
chr5	76785405	rs72593800	T	TG	213.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.834;DB;DP=39;ExcessHet=3.0103;FS=4.758;MQ=60.00;MQRankSum=0.00;QD=5.47;ReadPosRankSum=0.327;SOR=0.236;VQSLOD=5.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,13:39:99:222,0,700
chr5	76787808	rs41104	G	C	2601.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.270e+00;DB;DP=30;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.94;ReadPosRankSum=0.416;SOR=1.739;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:579,0,522
chr5	76787919	rs42764	C	G	11984.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.910e-01;DB;DP=227;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.45;ReadPosRankSum=-9.290e-01;SOR=0.654;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,115:227:99:2803,0,2749
chr5	76916328	rs35707197	A	T	713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=74;ExcessHet=3.0103;FS=0.980;MQ=60.00;MQRankSum=0.00;QD=9.64;ReadPosRankSum=1.25;SOR=0.690;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:53,21:74:99:0|1:76916328_A_T:722,0,3178:76916328
chr5	76916335	rs5868876	G	GC	5032.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=75;ExcessHet=1.5490;FS=1.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=0.867;SOR=0.576;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:53,22:75:99:0|1:76916328_A_T:757,0,3185:76916328
chr5	76926578	rs13357072	T	C	10826.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=142;ExcessHet=3.0103;FS=0.498;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.27;ReadPosRankSum=-1.202e+00;SOR=0.750;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,77:142:99:2162,0,1622
chr5	76926651	rs62362480	A	C	5447.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.250e-01;DB;DP=121;ExcessHet=1.5490;FS=1.270;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=-9.700e-02;SOR=0.861;VQSLOD=6.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,69:121:99:1659,0,1194
chr5	76934074	rs10647053	G	GAA	366.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.90;ReadPosRankSum=0.00;SOR=0.892;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:87:118,0,87
chr5	76989237	rs150491086	A	G	726.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.553e+00;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-8.170e-01;SOR=0.570;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,29:58:99:735,0,844
chr5	77001106	rs35573409	GA	G	45.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:22:53,0,22
chr5	77004275	rs352548	A	T	328.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.714e+00;DB;DP=39;ExcessHet=3.0103;FS=3.028;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.42;ReadPosRankSum=0.557;SOR=0.317;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,16:39:99:337,0,636
chr5	77071703	rs254415	G	T	115.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.93;SOR=1.609;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:130,12,0
chr5	77071835	rs352575	G	A	418.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.270e-01;DB;DP=15;ExcessHet=1.5490;FS=4.129;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=1.14;SOR=1.765;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:144,0,182
chr5	77298619	rs11552314	A	T	427.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=20;ExcessHet=3.0103;FS=5.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=0.476;SOR=2.448;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:436,0,151
chr5	77412011	rs42360	A	G	817.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.150;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.18;ReadPosRankSum=-8.140e-01;SOR=0.811;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,34:62:99:826,0,645
chr5	77424836	rs1422067	C	T	94.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.86;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:35:103,0,35
chr5	77425028	rs6453373	A	T	10813.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.98;SOR=1.089;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3134,314,0
chr5	77437271	rs2302977	A	T	60.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:69:0|1:77437271_A_T:69,0,143:77437271
chr5	77461308	rs138987182	AGTT	A	276.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=-1.569e+00;SOR=0.569;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,7:10:99:285,0,137
chr5	77473165	rs4532349	A	G	352.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.900e-02;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.49;ReadPosRankSum=-9.080e-01;SOR=0.763;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,17:47:99:361,0,732
chr5	77473419	rs10428660	T	C	132.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.570e-01;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=1.25;SOR=0.120;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:141,0,213
chr5	77656300	rs4072852	G	C	287.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.053e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.96;ReadPosRankSum=0.129;SOR=0.184;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:296,0,338
chr5	77656771	rs4634329	T	C	1778.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.76;SOR=6.138;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:422,30,0
chr5	77745853	rs66744502	C	CA	8442.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=1.022;VQSLOD=5.51;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2562,207,0
chr5	77755035	rs6453391	T	C	4679.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.450e-01;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=0.197;SOR=0.712;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1746,165,0
chr5	77755343	rs13155648	A	G	697.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.500e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.84;ReadPosRankSum=0.393;SOR=1.781;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:164,15,0
chr5	77784542	rs11740697	C	T	288.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.61;ReadPosRankSum=1.98;SOR=2.303;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:28:187,0,28
chr5	77784738	rs2241566	A	G	6240.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.43;DB;DP=67;ExcessHet=3.0103;FS=1.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.37;ReadPosRankSum=-1.189e+00;SOR=0.917;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2126,201,0
chr5	78134966	rs144799820	CAAG	C	727.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=20;ExcessHet=3.9794;FS=6.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.64;ReadPosRankSum=-1.550e-01;SOR=0.145;VQSLOD=6.24;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,8:20:99:300,0,604
chr5	78135201	rs25413	C	T	2223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=111;ExcessHet=3.9794;FS=2.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.983;SOR=0.531;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,53:111:99:1309,0,1446
chr5	78135276	rs25415	T	G	1869.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=68;ExcessHet=3.9794;FS=3.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.63;ReadPosRankSum=1.02;SOR=0.436;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,42:68:99:1100,0,675
chr5	78181423	rs1071598	C	T	1263.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=98;ExcessHet=3.0103;FS=0.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=1.52;SOR=0.831;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,51:98:99:1272,0,1061
chr5	78251347	rs6870443	A	G	171.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.27;ReadPosRankSum=1.90;SOR=1.371;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:180,0,214
chr5	78264684	rs61216659	C	G	244.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.480;SOR=0.425;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:148,0,136
chr5	78265041	rs3733895	A	G	512.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.924;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.66;ReadPosRankSum=0.720;SOR=1.022;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,18:29:99:521,0,250
chr5	78265092	rs918581	C	T	345.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.923;DB;DP=16;ExcessHet=3.9794;FS=2.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.33;ReadPosRankSum=-1.134e+00;SOR=2.147;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,5:16:99:0|1:78265092_C_T:177,0,447:78265092
chr5	78265096	rs918580	C	T	313.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=16;ExcessHet=3.9794;FS=2.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=-7.280e-01;SOR=1.981;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,5:16:99:0|1:78265092_C_T:177,0,447:78265092
chr5	78280593	rs163128	C	T	206.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.92;ReadPosRankSum=-9.670e-01;SOR=0.569;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:76,0,34
chr5	78339755	rs248383	C	T	198.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=3.611;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr5	78340062	rs248384	T	C	4356.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125e+00;DB;DP=76;ExcessHet=1.5490;FS=6.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.25;ReadPosRankSum=-6.640e-01;SOR=0.285;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,46:76:99:1237,0,803
chr5	78340257	rs248385	C	G	6061.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.710e-01;DB;DP=123;ExcessHet=1.5490;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=-6.540e-01;SOR=0.696;VQSLOD=6.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,65:123:99:1599,0,1380
chr5	78340286	rs532964	A	G	5528.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.117;DB;DP=110;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=0.012;SOR=0.745;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,57:110:99:1350,0,1220
chr5	78340411	rs531982	T	C	1708.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-02;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.56;ReadPosRankSum=-2.400e-01;SOR=0.744;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:414,0,407
chr5	78340517	rs2249096	A	T	430.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=-1.150e+00;SOR=3.611;VQSLOD=16.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:113,0,28
chr5	78347298	rs367867088	T	C	518.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=52;ExcessHet=3.0103;FS=8.267;MQ=60.00;MQRankSum=0.00;QD=9.97;ReadPosRankSum=-1.082e+00;SOR=1.883;VQSLOD=17.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,21:52:99:527,0,785
chr5	78351636	rs2253262	A	C	4407.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=93;ExcessHet=1.5490;FS=2.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=0.119;SOR=0.889;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,43:93:99:1099,0,1268
chr5	78365087	rs644191	G	A	1001.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.83;ReadPosRankSum=1.29;SOR=0.874;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,2:12:47:47,0,312
chr5	78373431	rs682985	C	T	1089.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=52;ExcessHet=3.9794;FS=3.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-9.210e-01;SOR=1.132;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,23:52:99:650,0,713
chr5	78411822	rs619100	C	G	605.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.141e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.28;ReadPosRankSum=0.552;SOR=0.693;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:240,0,215
chr5	78416416	rs567754	C	T	189.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.850e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.52;ReadPosRankSum=-4.810e-01;SOR=0.223;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:103,0,154
chr5	78416973	rs112263466	CA	C	450.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=48;ExcessHet=6.9897;FS=9.676;MQ=59.95;MQRankSum=0.00;QD=3.47;ReadPosRankSum=0.537;SOR=1.795;VQSLOD=2.40;culprit=FS	GT:AD:DP:GQ:PL	0/1:32,13:48:99:148,0,729
chr5	78421780	rs694290	G	A	1924.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670e-01;DB;DP=39;ExcessHet=1.5490;FS=1.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.061;SOR=0.943;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,12:39:99:366,0,871
chr5	78573790	rs13182512	A	T	4961.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=1.079;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2588,242,0
chr5	78573970	rs16876598	T	C	3085.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=2.327;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1682,156,0
chr5	78573993	.	TAAA	T,TA	1826.39	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.496;DP=31;ExcessHet=3.0103;FS=7.660;MQ=60.00;MQRankSum=0.00;QD=23.12;ReadPosRankSum=-5.790e-01;SOR=2.113;VQSLOD=4.25;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,6,25:31:62:1041,610,527,156,0,62
chr5	78586914	rs10043008	G	T	1975.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.703e+00;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.36;ReadPosRankSum=-1.239e+00;SOR=1.179;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1143,104,0
chr5	78595808	rs10640258	C	CAT	147.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.79;ReadPosRankSum=1.15;SOR=0.693;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr5	78596044	rs10514159	T	C	7297.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=94;ExcessHet=3.0103;FS=2.476;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.77;ReadPosRankSum=-1.494e+00;SOR=0.766;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2780,281,0
chr5	78602472	rs7704383	C	T	229.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=3.912;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr5	78608354	.	CT	C	1117.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.356e+00;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.44;ReadPosRankSum=-1.340e-01;SOR=0.629;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,16:18:5:339,5,0
chr5	78734699	rs78093840	TA	T	238.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.29;ReadPosRankSum=-6.480e-01;SOR=0.648;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:42:55,0,42
chr5	78742627	rs35036295	AT	A	113.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.620e-01;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=57.72;MQRankSum=0.366;QD=5.66;ReadPosRankSum=-1.440e-01;SOR=0.340;VQSLOD=0.278;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:36:36,0,55
chr5	78742858	rs12516663	T	C	6237.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=80;ExcessHet=3.9794;FS=1.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=-6.400e-02;SOR=0.602;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,31:80:99:702,0,1213
chr5	78742980	rs6862358	G	A	3983.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.400e-02;DB;DP=38;ExcessHet=3.0103;FS=2.492;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=0.804;SOR=1.267;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:540,0,465
chr5	78915992	rs3828602	A	C	762.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.75;DB;DP=19;ExcessHet=3.9794;FS=1.591;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=0.785;SOR=1.255;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:346,0,141
chr5	78940783	rs16876991	C	T	224.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:60:233,0,60
chr5	78944179	rs62365186	G	A	96.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.30;ReadPosRankSum=-5.240e-01;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:104,0,29
chr5	78945171	rs7712162	C	T	184.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-3.660e-01;SOR=0.473;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,204
chr5	78952691	rs67039976	G	A	1935.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;DB;DP=74;ExcessHet=3.9794;FS=0.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.40;ReadPosRankSum=0.688;SOR=0.621;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,42:74:99:1030,0,687
chr5	78977661	rs3736401	A	C	309.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.17;ReadPosRankSum=0.144;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:172,0,168
chr5	79024734	rs1541813	A	G	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630e-01;DB;DP=38;ExcessHet=3.0103;FS=3.584;MQ=59.56;MQRankSum=1.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.629;SOR=0.238;VQSLOD=0.377;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,18:38:99:465,0,557
chr5	79027082	.	G	T	1327.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.410e-01;DP=86;ExcessHet=3.0103;FS=0.848;MQ=60.00;MQRankSum=0.00;QD=15.43;ReadPosRankSum=-9.250e-01;SOR=0.841;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1336,0,1181
chr5	79028472	rs4704585	C	T	456.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.739e+00;DB;DP=28;ExcessHet=3.0103;FS=9.416;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=0.072;SOR=0.473;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,18:28:99:465,0,275
chr5	79028726	rs13158477	A	G	1081.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.500e-02;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.525;SOR=0.723;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,45:104:99:1090,0,1522
chr5	79029594	rs1019762	T	C	552.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.51;ReadPosRankSum=-6.070e-01;SOR=0.693;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:561,0,760
chr5	79030045	rs4639193	A	G	679.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=56;ExcessHet=3.0103;FS=5.408;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-1.267e+00;SOR=1.209;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,24:56:99:688,0,884
chr5	79034404	.	A	G	443.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190e-01;DP=69;ExcessHet=3.0103;FS=2.256;MQ=60.00;MQRankSum=0.00;QD=6.42;ReadPosRankSum=-1.500e-01;SOR=1.154;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,21:69:99:452,0,1278
chr5	79039828	rs13155412	T	C	811.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.750e-01;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=0.248;SOR=0.793;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,37:72:99:820,0,793
chr5	79040977	.	CA	C	464.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.660e-01;DP=8;ExcessHet=6.9897;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:8:29:29,0,86
chr5	79086620	rs13155037	G	A	1100.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.360e-01;DB;DP=19;ExcessHet=1.5490;FS=3.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.75;ReadPosRankSum=1.45;SOR=2.155;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:707,57,0
chr5	79086649	rs259096	G	A	3858.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=28.86;SOR=2.649;VQSLOD=4.60;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1482,125,0
chr5	79086903	rs10052867	G	A	2654.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.035;DB;DP=57;ExcessHet=1.5490;FS=2.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.78;ReadPosRankSum=0.101;SOR=1.222;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1855,171,0
chr5	79095050	rs3833643	G	GA	142.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=-7.000e-01;SOR=0.892;VQSLOD=7.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:151,0,115
chr5	79279310	rs3841613	T	TTGA	343.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.22;SOR=4.407;VQSLOD=5.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	79281658	rs7734858	T	C	1321.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.608;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.79;ReadPosRankSum=0.328;SOR=3.912;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:653,48,0
chr5	79281749	rs11437550	T	TG	519.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=5.421;VQSLOD=7.22;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:79281749_T_TG:275,21,0:79281749
chr5	79281763	rs33942235	G	GA	441.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.06;SOR=4.804;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:18:1|1:79281749_T_TG:236,18,0:79281749
chr5	79282544	rs2291524	C	T	2748.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.40;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=59.89;MQRankSum=0.931;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=1.47;SOR=0.779;VQSLOD=2.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1091,102,0
chr5	79283110	rs10066471	A	T	376.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.36;SOR=4.804;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr5	79286831	rs34727832	C	G	2166.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923e+00;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=-1.960e-01;SOR=0.739;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,78:159:99:2175,0,2390
chr5	79331194	rs4425490	A	G	212.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.36;SOR=3.912;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr5	79351411	rs426623	T	C	175.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.48;ReadPosRankSum=-9.920e-01;SOR=0.368;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:79351411_T_C:111,0,314:79351411
chr5	79351416	rs17879373	GA	G	175.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-9.920e-01;SOR=0.368;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,3:8:99:0|1:79351411_T_C:111,0,314:79351411
chr5	79351544	rs412379	G	A	1549.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.963e+00;DB;DP=35;ExcessHet=6.9897;FS=0.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=-5.270e-01;SOR=0.850;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:476,0,574
chr5	79351852	rs438042	A	T	5294.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=128;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.04;ReadPosRankSum=-1.040e+00;SOR=0.681;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:76,52:128:99:0|1:79351852_A_T:1998,0,5939:79351852
chr5	79351859	rs405482	G	A	4920.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.614;DB;DP=115;ExcessHet=6.9897;FS=1.324;MQ=60.00;MQRankSum=0.00;QD=14.06;ReadPosRankSum=-6.310e-01;SOR=0.598;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,48:115:99:0|1:79351852_A_T:1811,0,5796:79351852
chr5	79351860	rs447875	G	A	4863.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.650e-01;DB;DP=115;ExcessHet=6.9897;FS=1.315;MQ=60.00;MQRankSum=0.00;QD=13.90;ReadPosRankSum=-8.130e-01;SOR=0.618;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:67,48:115:99:0|1:79351852_A_T:1814,0,5774:79351852
chr5	79354147	rs368936	C	T	1937.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923e+00;DB;DP=33;ExcessHet=6.9897;FS=2.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=-2.850e-01;SOR=0.418;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,15:33:99:455,0,600
chr5	79354184	rs2241826	A	G	1160.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=-1.460e-01;SOR=0.458;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:262,0,428
chr5	79354293	rs2241825	A	G	680.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.427e+00;DB;DP=16;ExcessHet=6.9897;FS=1.514;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.49;ReadPosRankSum=0.307;SOR=1.112;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:221,0,315
chr5	79354367	rs3214681	A	AT	1621.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=50;ExcessHet=6.9897;FS=3.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.387;SOR=1.244;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,23:50:99:524,0,655
chr5	79354647	rs432267	C	G	3181.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=60;ExcessHet=6.9897;FS=11.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=-4.490e-01;SOR=0.245;VQSLOD=17.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,33:60:99:852,0,653
chr5	79354702	rs411943	C	T	1803.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.67;DB;DP=28;ExcessHet=6.9897;FS=2.227;MQ=60.00;MQRankSum=0.00;QD=16.55;ReadPosRankSum=0.561;SOR=1.020;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:448,0,330
chr5	79355150	.	CAA	C	443.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DP=14;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.993;SOR=0.538;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:14:59:215,0,59
chr5	79355192	rs2434302	T	A	1510.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=52;ExcessHet=3.9794;FS=1.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=0.263;SOR=0.899;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,35:52:99:932,0,450
chr5	79365944	rs11377619	C	CT	85.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.115;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.08;ReadPosRankSum=-7.530e-01;SOR=1.329;VQSLOD=6.60;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:67,6,0
chr5	79366080	rs256439	T	C	1084.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.084;DB;DP=27;ExcessHet=6.9897;FS=4.941;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.86;ReadPosRankSum=-5.340e-01;SOR=1.561;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:288,0,523
chr5	79366249	rs256438	T	G	1761.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=53;ExcessHet=3.9794;FS=3.116;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=-9.980e-01;SOR=1.015;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,28:53:99:670,0,708
chr5	79368016	rs256437	T	C	2654.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=1.730;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:487,45,0
chr5	79372407	rs384941	C	T	715.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=19;ExcessHet=3.9794;FS=8.201;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.89;ReadPosRankSum=0.129;SOR=2.262;VQSLOD=19.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:390,0,193
chr5	79375575	rs17885983	T	C	1202.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780e-01;DB;DP=35;ExcessHet=1.5490;FS=2.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.10;ReadPosRankSum=-1.338e+00;SOR=1.149;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:449,0,467
chr5	79378070	rs2918422	C	G	394.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.15;ReadPosRankSum=1.04;SOR=0.275;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:16:289,0,16
chr5	79378528	rs2434300	A	G	2697.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DB;DP=28;ExcessHet=3.0103;FS=5.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.70;ReadPosRankSum=0.397;SOR=0.197;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:935,84,0
chr5	79410477	.	CA	C	65.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.99;ReadPosRankSum=1.50;SOR=0.368;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:26:74,0,26
chr5	79412328	rs4703798	T	C	539.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=0.00;SOR=0.622;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:145,0,149
chr5	79431019	rs6893450	C	G	358.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.303;DB;DP=13;ExcessHet=3.9794;FS=3.617;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.778;SOR=0.120;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:177,0,267
chr5	79443169	rs7712447	A	G	4534.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=1.179;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1250,120,0
chr5	79446904	rs73772260	G	A	627.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.011e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.16;ReadPosRankSum=-3.570e-01;SOR=0.693;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:399,33,0
chr5	79473059	rs11429938	C	CT	804.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.35;SOR=2.303;VQSLOD=6.10;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:392,33,0
chr5	79473286	rs6890275	G	T	2172.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=43;ExcessHet=3.9794;FS=3.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=1.41;SOR=0.689;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:456,0,642
chr5	79499076	rs35653111	C	CATAT	274.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.720e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.86;ReadPosRankSum=-8.900e-02;SOR=1.445;VQSLOD=6.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,8:12:99:283,0,153
chr5	79499167	rs6893507	T	C	59.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:67,0,32
chr5	79551867	rs1966470	A	G	11616.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=2.442;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3904,342,0
chr5	79595396	rs4704659	T	C	211.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.890e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.08;ReadPosRankSum=1.44;SOR=0.693;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:73:78,0,73
chr5	79595404	rs33987570	CA	C	186.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.63;ReadPosRankSum=0.906;SOR=0.693;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:46:77,0,46
chr5	79596274	rs35486429	C	T	1280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=0.795;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,48:96:99:1289,0,1306
chr5	79596364	.	G	GTCCCTCTCCCTC	211.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DP=16;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;QD=13.21;ReadPosRankSum=-9.780e-01;SOR=1.863;VQSLOD=5.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:220,0,1227
chr5	79616083	rs1862136	G	C	4697.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.384;DB;DP=108;ExcessHet=1.5490;FS=2.480;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.502;SOR=0.538;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,35:108:99:736,0,1868
chr5	79617357	rs16876315	T	C	84.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=12;ExcessHet=3.0103;FS=3.090;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.02;ReadPosRankSum=-3.490e-01;SOR=2.494;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,3:12:93:93,0,235
chr5	79655782	rs11948979	A	G	960.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.250e-01;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=59.97;MQRankSum=-5.240e-01;QD=27.45;ReadPosRankSum=1.65;SOR=1.075;VQSLOD=-8.260e-02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,9:15:99:323,0,176
chr5	79731608	rs2544599	G	A	2162.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.23;SOR=0.864;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:954,104,0
chr5	79733079	rs2544600	T	C	10835.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.41;SOR=1.032;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3050,309,0
chr5	79733425	rs61739321	G	A	486.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e-02;DB;DP=36;ExcessHet=3.0103;FS=2.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-1.047e+00;SOR=1.239;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:495,0,444
chr5	79734297	rs259028	T	C	10664.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.993;DB;DP=87;ExcessHet=3.0103;FS=3.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.12;ReadPosRankSum=0.936;SOR=0.416;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,86:87:99:2843,237,0
chr5	79734409	rs259029	G	A	10050.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=0.939;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2681,249,0
chr5	79735858	rs168939	A	G	3632.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.491e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=-1.829e+00;SOR=0.728;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1157,108,0
chr5	79738779	rs259032	G	A	344.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=2.303;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:151,15,0
chr5	79739685	rs259033	G	A	3013.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.084e+00;DB;DP=30;ExcessHet=3.0103;FS=3.767;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-8.160e-01;SOR=0.359;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:979,90,0
chr5	79741018	rs259034	T	A	6583.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.550e+00;DB;DP=77;ExcessHet=3.0103;FS=3.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.21;ReadPosRankSum=-6.800e-02;SOR=0.413;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2359,230,0
chr5	79741304	rs34312342	CT	C	195.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.35;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.12;ReadPosRankSum=0.00;SOR=0.990;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,6:8:28:133,0,28
chr5	79743821	rs2251759	T	A	5225.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=28.27;SOR=2.576;VQSLOD=4.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1097,93,0
chr5	79745469	rs249038	A	G	6690.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.14;SOR=0.767;VQSLOD=20.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1583,165,0
chr5	79746086	rs3072025	TCTTA	T	544.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.111e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.77;ReadPosRankSum=-8.420e-01;SOR=3.126;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr5	79746633	.	ATTT	A	301.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DP=5;ExcessHet=3.0103;FS=16.021;MQ=59.83;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.83;ReadPosRankSum=1.38;SOR=5.280;VQSLOD=0.241;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,2:5:45:70,0,45
chr5	79747291	rs249039	A	G	4778.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.220e-01;DB;DP=51;ExcessHet=3.0103;FS=2.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.78;ReadPosRankSum=-8.400e-02;SOR=1.097;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1834,153,0
chr5	79751332	rs249040	A	G	368.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=0.842;SOR=0.368;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:123,12,0
chr5	79755038	rs249015	C	T	355.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.18;SOR=3.258;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:157,12,0
chr5	79768392	rs33928816	TA	T	336.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.309e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=-7.120e-01;SOR=3.126;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:86,9,0
chr5	79773028	rs166062	T	G	3404.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.249;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.37;ReadPosRankSum=0.383;SOR=0.868;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1043,101,0
chr5	79784184	rs394170	G	C	549.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.34;ReadPosRankSum=-8.420e-01;SOR=2.584;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:223,15,0
chr5	79809658	rs249011	A	T	1077.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.150e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.80;ReadPosRankSum=0.122;SOR=1.280;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:350,0,160
chr5	79815658	rs369998	T	C	4943.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=126;ExcessHet=1.5490;FS=5.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=-2.880e-01;SOR=0.420;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,63:126:99:1602,0,1429
chr5	79855372	rs32857	A	G	4849.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e-01;DB;DP=70;ExcessHet=3.0103;FS=2.423;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.66;ReadPosRankSum=-1.087e+00;SOR=0.510;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,36:70:99:856,0,805
chr5	79933653	rs34545755	T	TGAAA	345.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.31;DB;DP=16;ExcessHet=3.0103;FS=5.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=0.307;SOR=2.833;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:354,0,438
chr5	79945711	rs836821	C	A	191.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.207e+00;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.36;ReadPosRankSum=1.87;SOR=0.693;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:200,0,425
chr5	79950163	rs70991108	C	CTGGCGCGTCCCGCCCAGGT	2540.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.17;SOR=2.885;VQSLOD=3.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,44:44:99:2557,171,0
chr5	79950389	rs151182735	GC	G	1217.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.990e-01;DB;DP=64;ExcessHet=3.0103;FS=2.685;MQ=60.00;MQRankSum=0.00;QD=19.02;ReadPosRankSum=1.36;SOR=0.345;VQSLOD=5.70;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,33:64:99:0|1:79950389_GC_G:1226,0,1771:79950389
chr5	79950403	rs10168	C	T	1241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.360e+00;DB;DP=56;ExcessHet=3.0103;FS=9.427;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=0.535;SOR=0.126;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,30:56:99:0|1:79950389_GC_G:1250,0,1657:79950389
chr5	79950497	rs2250063	C	T	2718.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.938e+00;DB;DP=145;ExcessHet=3.0103;FS=6.210;MQ=60.00;MQRankSum=0.00;QD=18.75;ReadPosRankSum=-5.260e-01;SOR=1.321;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,70:145:99:2727,0,2968
chr5	79950508	rs1105525	C	T	3110.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.515e+00;DB;DP=161;ExcessHet=3.0103;FS=4.465;MQ=60.00;MQRankSum=0.00;QD=19.32;ReadPosRankSum=0.920;SOR=0.403;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,82:161:99:3119,0,2923
chr5	79950512	rs1105524	A	G	19474.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.622e+00;DB;DP=179;ExcessHet=3.0103;FS=0.951;MQ=60.00;MQRankSum=0.00;QD=30.57;ReadPosRankSum=0.981;SOR=0.567;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,179:179:99:7572,538,0
chr5	79950699	rs201874762	TGCAGCGGCTGCAGCGGCC	T	5224.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=299;ExcessHet=3.0103;FS=1.989;MQ=60.00;MQRankSum=0.00;QD=17.47;ReadPosRankSum=0.697;SOR=0.565;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:156,143:299:99:5233,0,5909
chr5	79950741	rs144629981	GCCCCCAGCT	G	4026.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.057;DB;DP=210;ExcessHet=3.0103;FS=5.219;MQ=60.00;MQRankSum=0.00;QD=19.17;ReadPosRankSum=-3.726e+00;SOR=0.418;VQSLOD=2.68;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:106,104:210:99:4035,0,4038
chr5	79950781	rs1650697	A	G	11611.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.990e+00;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.24;ReadPosRankSum=-6.588e+00;SOR=0.681;VQSLOD=18.21;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:56,67:123:99:1810,0,1549
chr5	79952154	rs1382539	G	A	137.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.25;ReadPosRankSum=0.345;SOR=0.892;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:146,0,148
chr5	79952165	rs1382540	C	G	221.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=0.175;SOR=0.859;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:230,0,171
chr5	79952390	rs1643639	T	C	875.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.41;ReadPosRankSum=-5.360e-01;SOR=0.666;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,36:93:99:884,0,1554
chr5	79952426	rs1650694	G	C	5473.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=80;ExcessHet=3.9794;FS=4.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.20;ReadPosRankSum=2.57;SOR=0.973;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,32:80:99:738,0,1077
chr5	79952541	rs1677667	C	G	357.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.551e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.76;ReadPosRankSum=-7.130e-01;SOR=0.392;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:366,0,463
chr5	79960849	rs1650670	A	G	69.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:78,0,33
chr5	79960955	rs1382543	G	A	194.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.880e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.367;SOR=0.743;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:203,0,99
chr5	79965775	rs1650650	G	T	118.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=1.609;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:135,12,0
chr5	79966197	rs1677649	G	A	127.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=-1.415e+00;SOR=0.693;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:136,0,136
chr5	79967954	rs1677652	G	C	156.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.369e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.53;ReadPosRankSum=-7.030e-01;SOR=1.179;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:165,0,109
chr5	79968258	rs1650648	T	A	1288.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=135;ExcessHet=3.0103;FS=0.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.154;SOR=0.792;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,57:135:99:1297,0,1849
chr5	79968271	rs1677653	A	G	1110.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.743;DB;DP=124;ExcessHet=3.0103;FS=0.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.95;ReadPosRankSum=0.436;SOR=0.795;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,50:124:99:1119,0,1760
chr5	79968330	rs1677654	G	A	487.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=54;ExcessHet=3.0103;FS=4.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.02;ReadPosRankSum=-1.380e-01;SOR=1.483;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,18:54:99:496,0,972
chr5	79968496	rs1677655	C	T	228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-02;DB;DP=29;ExcessHet=3.0103;FS=1.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.87;ReadPosRankSum=-6.130e-01;SOR=1.347;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,9:29:99:237,0,590
chr5	79974570	rs836808	G	A	147.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DB;DP=17;ExcessHet=3.0103;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.66;ReadPosRankSum=1.37;SOR=1.911;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:156,0,332
chr5	79974646	rs836807	T	C	4181.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=31.92;SOR=1.857;VQSLOD=5.81;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1520,152,0
chr5	79974983	rs836806	T	C	914.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.907;DB;DP=53;ExcessHet=3.0103;FS=1.147;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.404;SOR=0.485;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,33:53:99:923,0,472
chr5	80021193	rs245016	C	T	6839.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=75;ExcessHet=3.0103;FS=1.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.67;ReadPosRankSum=-3.670e+00;SOR=0.917;VQSLOD=21.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:43,32:75:99:767,0,1051
chr5	80083631	rs33010	G	A	1261.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.23;SOR=6.994;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:327,24,0
chr5	80088461	rs3830224	CAG	C	270.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=12;ExcessHet=3.0103;FS=3.802;MQ=60.00;MQRankSum=0.00;QD=22.52;ReadPosRankSum=0.078;SOR=2.419;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:279,0,192
chr5	80149981	rs184967	A	G	4009.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=2.462;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1000,93,0
chr5	80160596	rs34486413	AAATG	A	4111.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.55;ReadPosRankSum=0.156;SOR=0.818;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,11:29:99:0|1:80160596_AAATG_A:403,0,732:80160596
chr5	80160610	rs1805353	T	A	492.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.353e+00;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.92;ReadPosRankSum=-8.210e-01;SOR=0.527;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,19:33:99:1|0:80160596_AAATG_A:501,0,461:80160596
chr5	80168937	rs26279	G	A	10771.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=1.024;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2867,269,0
chr5	80366202	rs11745040	G	A	1905.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.294e+00;DB;DP=46;ExcessHet=6.9897;FS=5.399;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.469;SOR=1.177;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,27:46:99:742,0,532
chr5	80369447	rs7712425	A	T	121.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.62;ReadPosRankSum=-5.240e-01;SOR=0.784;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:58:58,0,70
chr5	80375793	rs190408	A	G	672.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.92;ReadPosRankSum=-5.110e-01;SOR=1.609;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:114,0,70
chr5	80376142	rs27650	T	C	4429.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=52;ExcessHet=3.9794;FS=6.944;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=1.42;SOR=0.329;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:819,0,647
chr5	80382806	rs7733625	G	T	462.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.578e+00;DB;DP=32;ExcessHet=3.0103;FS=3.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.45;ReadPosRankSum=-1.190e+00;SOR=0.313;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:471,0,469
chr5	80388554	rs2592094	C	T	400.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=23;ExcessHet=3.0103;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.40;ReadPosRankSum=1.23;SOR=1.445;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:409,0,318
chr5	80390225	rs505748	C	T	124.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.77;ReadPosRankSum=0.00;SOR=0.883;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:133,0,198
chr5	80390290	rs498119	C	T	307.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.712;SOR=1.051;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:98:98,0,191
chr5	80404653	.	CTGTGTG	C,CTG	1676.17	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.00;DP=13;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.77;ReadPosRankSum=-4.770e-01;SOR=3.171;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,6:13:99:546,164,125,193,0,154
chr5	80409729	rs10942942	T	C	3718.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=-8.030e-01;SOR=0.774;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:773,0,598
chr5	80419349	rs26891	C	G	669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.878e+00;DB;DP=30;ExcessHet=3.9794;FS=6.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=0.419;SOR=0.132;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:316,0,565
chr5	80423109	rs153244	G	A	553.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.410e-01;DB;DP=31;ExcessHet=3.0103;FS=3.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.771;SOR=1.814;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,16:31:99:562,0,491
chr5	80423202	rs34119	C	T	180.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.00;SOR=1.230;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:129,0,197
chr5	80475866	rs7722620	G	A	346.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.36;SOR=3.056;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:363,27,0
chr5	80502736	rs6453542	C	G	2112.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DB;DP=53;ExcessHet=6.9897;FS=0.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=0.408;SOR=0.635;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,15:53:99:387,0,1130
chr5	80502903	rs17228156	T	C	685.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.630e-01;DB;DP=47;ExcessHet=3.0103;FS=6.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=-1.618e+00;SOR=1.156;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:694,0,608
chr5	80521332	rs57563657	CTT	C	807.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.205e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=-5.660e-01;SOR=1.292;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:50:50,0,144
chr5	80546759	.	A	AAC	568.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=4;ExcessHet=3.9794;FS=0.000;MQ=57.79;MQRankSum=0.00;QD=28.45;ReadPosRankSum=0.00;SOR=1.402;VQSLOD=6.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:43:43,0,44
chr5	80626497	rs62621795	G	C	94.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=9;ExcessHet=3.0103;FS=2.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=-9.920e-01;SOR=0.959;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:103,0,207
chr5	80631511	rs6452399	G	A	612.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.449e+00;DB;DP=17;ExcessHet=6.9897;FS=8.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.22;ReadPosRankSum=-1.210e-01;SOR=2.998;VQSLOD=15.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,4:17:84:84,0,437
chr5	80639501	rs76125752	T	C	1504.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.340e-01;DB;DP=41;ExcessHet=3.9794;FS=2.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=1.37;SOR=0.413;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:522,0,581
chr5	80640919	rs147835552	TGCACACCGCTGCCACCTCCTC	T	431.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.91;ReadPosRankSum=0.824;SOR=1.055;VQSLOD=5.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,2:9:64:64,0,835
chr5	80655709	rs13163821	T	C	839.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.175;DB;DP=74;ExcessHet=3.0103;FS=5.186;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=-5.170e-01;SOR=0.291;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,33:74:99:848,0,1193
chr5	80659473	.	T	C	188.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.287e+00;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.48;ReadPosRankSum=0.691;SOR=0.223;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:197,0,201
chr5	80689730	rs367544811	AC	A	582.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.025;DB;DP=27;ExcessHet=3.9794;FS=3.303;MQ=60.00;MQRankSum=0.00;QD=13.23;ReadPosRankSum=-1.852e+00;SOR=1.410;VQSLOD=4.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,16:27:99:402,0,254
chr5	80689953	rs13178695	C	A	1631.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=53;ExcessHet=3.9794;FS=1.595;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.529;SOR=0.909;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:805,0,610
chr5	80690028	rs115140513	G	A	431.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.435e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.97;ReadPosRankSum=1.47;SOR=0.340;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,14:24:99:440,0,346
chr5	80690106	rs34513795	A	T	66.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=1.65;SOR=0.446;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:80690106_A_T:75,0,114:80690106
chr5	80690121	rs35003041	G	C	73.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:36:0|1:80690106_A_T:81,0,36:80690106
chr5	80716163	rs10746	T	G	617.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DB;DP=45;ExcessHet=3.0103;FS=2.755;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=0.011;SOR=0.323;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:626,0,569
chr5	80724256	rs77097724	A	G	149.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.86;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:158,0,28
chr5	80724572	rs3764985	G	A	229.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.544e+00;DB;DP=22;ExcessHet=3.0103;FS=2.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.42;ReadPosRankSum=-1.470e+00;SOR=0.156;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:238,0,446
chr5	80736449	rs139911197	T	C	1689.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.778;DB;DP=146;ExcessHet=3.0103;FS=1.319;MQ=60.00;MQRankSum=0.00;QD=11.57;ReadPosRankSum=0.449;SOR=0.845;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,69:146:99:1698,0,1886
chr5	81006377	rs13156146	G	T	386.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.693;DB;DP=5;ExcessHet=1.5490;FS=6.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=0.366;SOR=4.174;VQSLOD=13.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:193,15,0
chr5	81046711	rs143572025	G	T	850.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.634e+00;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.68;MQRankSum=1.54;QD=16.35;ReadPosRankSum=-1.190e-01;SOR=0.579;VQSLOD=-4.483e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,36:52:99:859,0,455
chr5	81283694	rs376209036	TCAGGCTAA	T	60.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.07;ReadPosRankSum=-1.383e+00;SOR=0.693;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,2:4:69:0|1:81283694_TCAGGCTAA_T:69,0,299:81283694
chr5	81283704	.	G	GAA	60.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.11;SOR=0.368;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,1:3:69:0|1:81283694_TCAGGCTAA_T:69,0,299:81283694
chr5	81474225	rs9293290	A	T	1845.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=15;ExcessHet=3.9794;FS=2.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=0.152;SOR=0.295;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:233,0,273
chr5	81538528	rs12654645	C	T	1101.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=51;ExcessHet=3.9794;FS=0.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=1.12;SOR=0.908;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:675,0,736
chr5	81548653	rs1560207	T	C	231.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=1.5490;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.19;ReadPosRankSum=-4.310e-01;SOR=2.584;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:71:71,0,117
chr5	81549216	rs1864183	C	T	3270.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.18;DB;DP=143;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.62;ReadPosRankSum=0.425;SOR=0.678;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,68:143:99:1606,0,1842
chr5	81549240	rs1864182	C	A	2950.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.588e+00;DB;DP=131;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.97;ReadPosRankSum=-5.580e-01;SOR=0.670;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,63:131:99:1469,0,1855
chr5	81549280	rs1864181	C	T	2034.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=86;ExcessHet=3.9794;FS=1.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=1.34;SOR=0.595;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,35:86:99:844,0,1332
chr5	81571035	rs76062650	T	C	2567.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.259;DB;DP=83;ExcessHet=3.9794;FS=1.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=-6.130e-01;SOR=0.778;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,51:83:99:1328,0,747
chr5	81571266	rs11346477	GA	G	1156.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.77;SOR=5.353;VQSLOD=5.71;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:36:485,36,0
chr5	81571669	rs226202	C	T	1067.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=4.332;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:175,15,0
chr5	81571846	rs226201	G	A	844.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=2.04;SOR=0.731;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,12:28:99:277,0,428
chr5	81572184	rs226200	G	C	2045.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.634e+00;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.73;ReadPosRankSum=-1.003e+00;SOR=0.795;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1628,159,0
chr5	81572464	rs226199	G	C	1366.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.04;SOR=3.026;VQSLOD=21.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:494,42,0
chr5	81573992	rs226198	C	T	5150.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=34.34;SOR=2.062;VQSLOD=5.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1505,137,0
chr5	81574371	rs11325430	GT	G	1995.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.24;SOR=8.410;VQSLOD=6.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,20:20:60:609,60,0
chr5	82135819	rs139917914	T	TA	399.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=16;ExcessHet=3.9794;FS=1.845;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.47;ReadPosRankSum=0.435;SOR=1.547;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:16:99:172,0,388
chr5	82135830	.	C	CCA	1855.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.34;ReadPosRankSum=1.40;SOR=1.793;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:0,11:15:12:435,0,12
chr5	82136064	rs113309601	T	TTCTTC	7628.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.41;SOR=1.859;VQSLOD=3.93;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2699,180,0
chr5	82353083	rs7724935	C	T	426.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120e-01;DB;DP=35;ExcessHet=3.0103;FS=3.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.070;SOR=1.329;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,12:35:99:0|1:82353083_C_T:435,0,1324:82353083
chr5	82353087	rs7707143	T	C	426.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=35;ExcessHet=3.0103;FS=3.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-8.700e-02;SOR=1.329;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:23,12:35:99:0|1:82353083_C_T:435,0,1324:82353083
chr5	82360783	rs2306336	T	C	956.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.099e+00;DB;DP=29;ExcessHet=1.5490;FS=1.125;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=0.088;SOR=0.914;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,13:29:99:252,0,371
chr5	82401082	.	C	T	179.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.61;ReadPosRankSum=1.98;SOR=1.609;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:41:188,0,41
chr5	82407098	rs1478482	G	A	810.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.05;ReadPosRankSum=-1.221e+00;SOR=2.494;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,7:9:99:0|1:82407098_G_A:281,0,136:82407098
chr5	82407105	rs1478481	A	G	237.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.465e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.66;ReadPosRankSum=-1.068e+00;SOR=0.693;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,6:8:99:0|1:82407098_G_A:246,0,139:82407098
chr5	82491674	rs28360135	T	C	1105.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=104;ExcessHet=3.0103;FS=3.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.63;ReadPosRankSum=-2.700e-01;SOR=0.782;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,49:104:99:1114,0,1355
chr5	82499307	rs2662238	G	A	457.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.094;DB;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.24;ReadPosRankSum=1.49;SOR=1.119;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:214,0,228
chr5	82785741	rs4339334	G	T	150.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.981e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.06;ReadPosRankSum=0.876;SOR=0.693;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:102,9,0
chr5	82786194	rs12332199	T	C	5207.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.495e+00;DB;DP=127;ExcessHet=1.5490;FS=1.622;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=0.565;SOR=0.838;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,127:127:99:3719,380,0
chr5	82789647	rs4470745	A	G	7598.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.464;DB;DP=114;ExcessHet=3.9794;FS=1.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=-6.470e-01;SOR=0.641;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,113:114:99:3690,302,0
chr5	82833145	rs2548541	G	A	7754.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=128;ExcessHet=3.9794;FS=2.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.33;ReadPosRankSum=1.05;SOR=0.515;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,56:128:99:1437,0,1917
chr5	82841476	rs695103	T	C	684.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.228e+00;DB;DP=63;ExcessHet=3.0103;FS=2.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=-1.518e+00;SOR=0.396;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:693,0,944
chr5	82843609	rs7728751	G	A	600.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.03;ReadPosRankSum=-8.190e-01;SOR=2.531;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr5	82849120	rs6873404	T	A	2201.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=38;ExcessHet=1.5490;FS=3.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.42;ReadPosRankSum=-1.063e+00;SOR=1.279;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,11:38:99:304,0,753
chr5	82868173	rs309585	G	A	759.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DB;DP=38;ExcessHet=3.9794;FS=2.103;MQ=59.83;MQRankSum=0.818;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=0.033;SOR=0.968;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,14:38:99:358,0,644
chr5	82875800	rs308365	C	T	3980.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.12;SOR=2.453;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:986,87,0
chr5	82940273	rs2242128	C	G	12292.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.110e-01;DB;DP=146;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=0.721;SOR=0.675;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,71:146:99:1745,0,1937
chr5	82940510	rs1457081	T	C	3075.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.276e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.18;ReadPosRankSum=-6.200e-01;SOR=2.811;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,14:20:99:462,0,184
chr5	82940548	rs1457082	C	T	743.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.361e+00;DB;DP=13;ExcessHet=6.9897;FS=3.104;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.83;ReadPosRankSum=-3.530e-01;SOR=1.745;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:161,0,280
chr5	83239132	rs146077789	GA	G	676.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=46;ExcessHet=3.9794;FS=3.255;MQ=59.88;MQRankSum=0.00;QD=7.96;ReadPosRankSum=-1.664e+00;SOR=0.990;VQSLOD=4.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,28:46:99:636,0,176
chr5	83259225	rs11746605	G	T	879.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=18;ExcessHet=3.9794;FS=6.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=1.87;SOR=0.128;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:304,0,267
chr5	83343964	rs2301088	A	T	2288.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=33;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.62;ReadPosRankSum=0.364;SOR=0.915;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:382,0,532
chr5	83356338	rs199702125	T	G	633.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DB;DP=48;ExcessHet=3.0103;FS=1.129;MQ=60.00;MQRankSum=0.00;QD=13.19;ReadPosRankSum=1.89;SOR=0.495;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:642,0,518
chr5	83360520	rs2269287	C	T	949.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.831;DB;DP=87;ExcessHet=3.0103;FS=0.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.91;ReadPosRankSum=-2.560e-01;SOR=0.546;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,39:87:99:958,0,1177
chr5	83433002	rs112614231	TAC	T	664.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=37;ExcessHet=3.9794;FS=0.970;MQ=60.00;MQRankSum=0.00;QD=7.46;ReadPosRankSum=0.927;SOR=0.927;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,7:37:99:113,0,820
chr5	83433004	rs350490	C	*,T	2830.44	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.678e+00;DB;DP=37;ExcessHet=3.0103;FS=3.244;MQ=60.00;MQRankSum=0.00;QD=20.22;ReadPosRankSum=0.184;SOR=1.172;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/2:1,7,29:37:99:1020,699,790,198,0,114
chr5	83433006	rs200843007	C	T	84.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.16;SOR=0.770;VQSLOD=20.57;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,7:39:93:93,0,862
chr5	85578826	rs62373400	C	T	538.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=26;ExcessHet=3.0103;FS=2.287;MQ=52.40;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=-8.100e-02;SOR=1.609;VQSLOD=-5.639e-01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,17:26:99:547,0,212
chr5	85582712	rs2964837	T	C	3092.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=94;ExcessHet=6.9897;FS=3.330;MQ=56.99;MQRankSum=-4.779e+00;NEGATIVE_TRAIN_SITE;QD=11.46;ReadPosRankSum=1.28;SOR=0.726;VQSLOD=-3.620e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,38:94:99:807,0,1454
chr5	85583507	rs71580744	T	G	1036.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.524e+00;DB;DP=24;ExcessHet=6.9897;FS=4.241;MQ=52.39;MQRankSum=0.575;NEGATIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=-1.187e+00;SOR=0.371;VQSLOD=-2.111e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,11:24:99:331,0,267
chr5	85583642	rs71641946	C	T	411.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200e-01;DB;DP=13;ExcessHet=3.9794;FS=4.548;MQ=56.62;MQRankSum=2.00;NEGATIVE_TRAIN_SITE;QD=17.13;ReadPosRankSum=2.36;SOR=0.154;VQSLOD=-1.705e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,11:13:51:0|1:85583642_C_T:286,0,51:85583642
chr5	85583651	rs144722739	C	T	38.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=57.95;MQRankSum=0.787;NEGATIVE_TRAIN_SITE;QD=2.94;ReadPosRankSum=1.88;SOR=1.508;VQSLOD=-2.329e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,2:13:47:1|0:85583642_C_T:47,0,456:85583642
chr5	85586579	rs10066606	T	C	943.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=54.86;MQRankSum=3.95;NEGATIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=-4.120e-01;SOR=0.693;VQSLOD=-3.535e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,9:27:99:295,0,757
chr5	85586584	rs10038100	C	T	1574.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=33;ExcessHet=3.9794;FS=1.429;MQ=50.55;MQRankSum=-4.224e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=18.74;ReadPosRankSum=1.64;SOR=1.051;VQSLOD=-1.749e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,20:33:99:675,0,448
chr5	85591932	rs4629629	C	T	285.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.82;ReadPosRankSum=-8.420e-01;SOR=0.495;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr5	86410998	rs1004988	T	G	974.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.93;SOR=6.439;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr5	86513974	rs254643	A	G	1350.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.94;SOR=0.954;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:446,39,0
chr5	86564995	rs3734000	T	A	2450.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.975e+00;DB;DP=23;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.88;ReadPosRankSum=0.832;SOR=0.747;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:806,69,0
chr5	86633973	rs3752862	G	A	5095.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=2.403;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1502,129,0
chr5	86637164	rs35694079	G	GA	462.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.21;SOR=1.061;VQSLOD=5.26;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:56,6,0
chr5	86667856	rs35014912	G	GA	3843.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.06;SOR=1.846;VQSLOD=5.46;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1127,123,0
chr5	86679495	rs368117332	TA	T	578.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=5.31;ReadPosRankSum=0.683;SOR=0.731;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:30:99:213,0,198
chr5	86695274	rs2230641	A	G	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=38;ExcessHet=3.0103;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.30;ReadPosRankSum=-1.210e-01;SOR=1.061;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,14:38:99:324,0,653
chr5	86697387	rs3093816	A	G	396.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.450e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=-2.720e-01;SOR=0.990;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:154,12,0
chr5	87493757	rs358295	C	G	2547.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.447e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.31;ReadPosRankSum=-6.440e-01;SOR=0.757;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:842,72,0
chr5	87497977	rs358289	C	T	4300.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.58;SOR=1.294;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1118,105,0
chr5	87502325	rs357515	G	A	2080.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.782;DB;DP=27;ExcessHet=3.0103;FS=1.788;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.47;ReadPosRankSum=-7.700e-02;SOR=0.644;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:3,24:27:2:1|1:87502320_TG_T:551,2,0:87502320
chr5	87963272	rs5869431	G	GA	8426.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=31.45;SOR=0.803;VQSLOD=5.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2401,181,0
chr5	87968864	rs6882046	A	G	1916.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=1.402;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:787,66,0
chr5	87968912	.	CA	C	300.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e-01;DP=35;ExcessHet=6.9897;FS=4.716;MQ=60.00;MQRankSum=0.00;QD=2.95;ReadPosRankSum=-3.170e-01;SOR=0.388;VQSLOD=4.81;culprit=QD	GT:AD:DP:GQ:PL	0/1:20,6:35:65:65,0,415
chr5	88416255	rs139453030	A	AAC	1573.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=28;ExcessHet=3.9794;FS=0.873;MQ=60.00;MQRankSum=0.00;QD=18.96;ReadPosRankSum=-1.020e+00;SOR=0.859;VQSLOD=5.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,14:28:99:436,0,432
chr5	88416354	rs9293511	C	T	2712.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.344;DB;DP=44;ExcessHet=3.9794;FS=0.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=0.593;SOR=0.823;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:531,0,569
chr5	89703641	rs4873	C	G	713.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e-01;DB;DP=60;ExcessHet=3.0103;FS=3.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=-8.210e-01;SOR=0.702;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:722,0,790
chr5	89705752	rs11315430	GC	G	970.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=58.93;POSITIVE_TRAIN_SITE;QD=30.33;SOR=3.545;VQSLOD=6.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:336,33,0
chr5	89769728	rs2162986	T	C	55154.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=541;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=1.050;VQSLOD=20.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,541:541:99:17895,1623,0
chr5	89781594	rs2115500	C	T	8417.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=1.665;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2347,216,0
chr5	89784148	rs250374	T	A	407.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=0.464;SOR=0.622;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:69,0,67
chr5	89786285	rs6877680	A	G	169.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=1.329;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:94,9,0
chr5	89791258	rs2255938	A	G	557.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.20;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.89;ReadPosRankSum=0.00;SOR=1.721;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr5	89802004	rs27963	G	C	186.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.06;ReadPosRankSum=0.319;SOR=0.941;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:118,0,33
chr5	89807711	rs6897910	G	A	1015.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.109e+00;DB;DP=46;ExcessHet=3.9794;FS=4.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=0.243;SOR=0.343;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:590,0,621
chr5	89814604	rs1305059	G	GTGACC	2110.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.450e-01;DB;DP=36;ExcessHet=6.9897;FS=1.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=0.691;SOR=0.469;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,14:36:99:606,0,1421
chr5	89815312	rs34548009	G	GA	1033.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.420e-01;DB;DP=31;ExcessHet=3.9794;FS=3.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.98;ReadPosRankSum=1.37;SOR=0.392;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,17:31:99:400,0,327
chr5	89816299	rs171790	C	A	4330.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DB;DP=108;ExcessHet=6.9897;FS=3.306;MQ=60.00;MQRankSum=0.00;QD=11.46;ReadPosRankSum=0.157;SOR=0.867;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,53:108:99:1202,0,1474
chr5	89816309	rs35118083	A	AT	2698.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=98;ExcessHet=3.9794;FS=3.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-3.900e-02;SOR=0.909;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1232,0,1373
chr5	89816383	rs13182165	G	A	965.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DB;DP=38;ExcessHet=3.9794;FS=1.002;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=0.285;SOR=0.549;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:489,0,548
chr5	89820984	rs10069050	T	C	4554.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=94;ExcessHet=6.9897;FS=4.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.315;SOR=0.937;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,50:94:99:1321,0,1056
chr5	89825035	rs603015	G	A	933.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.342e+00;DB;DP=24;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.97;ReadPosRankSum=0.199;SOR=1.609;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:452,0,406
chr5	89825210	rs603870	G	A	3201.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.447e+00;DB;DP=303;ExcessHet=3.0103;FS=1.442;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.57;ReadPosRankSum=-1.153e+00;SOR=0.590;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:168,135:303:99:3210,0,4768
chr5	89854448	rs154568	G	C	112.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.01;ReadPosRankSum=0.524;SOR=0.138;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:49:49,0,362
chr5	89909972	rs11286344	GA	G	604.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.657;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.17;ReadPosRankSum=0.390;SOR=0.685;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:27:99:215,0,171
chr5	89914925	rs41311333	T	G	967.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.540e-01;DB;DP=73;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.337;SOR=0.681;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,43:73:99:976,0,648
chr5	89918620	.	CGATCTCAG	C	253.37	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.37;SOR=3.912;VQSLOD=3.70;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:89918620_CGATCTCAG_C:270,18,0:89918620
chr5	89918632	.	A	C	253.21	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.26;SOR=3.912;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:89918620_CGATCTCAG_C:270,18,0:89918620
chr5	89918634	.	T	G	253.21	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.55;SOR=3.912;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:89918620_CGATCTCAG_C:270,18,0:89918620
chr5	89918636	.	CA	C	253.21	PASS	AC=2;AF=1.00;AN=2;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=30.11;SOR=3.912;VQSLOD=4.86;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:89918620_CGATCTCAG_C:270,18,0:89918620
chr5	89918639	rs199840088	CCT	C	253.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.35;SOR=3.912;VQSLOD=3.39;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:89918620_CGATCTCAG_C:270,18,0:89918620
chr5	89924976	rs2366771	C	A	2751.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.872e+00;DB;DP=13;ExcessHet=3.0103;FS=4.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.92;ReadPosRankSum=1.56;SOR=0.217;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:138,0,246
chr5	89938587	rs2366773	C	T	6861.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.70;DB;DP=60;ExcessHet=3.0103;FS=6.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=1.18;SOR=0.650;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,31:60:99:919,0,658
chr5	89943571	rs2366777	G	T	3273.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641e+00;DB;DP=27;ExcessHet=3.9794;FS=0.909;MQ=59.99;MQRankSum=1.03;POSITIVE_TRAIN_SITE;QD=23.72;ReadPosRankSum=-7.800e-02;SOR=0.883;VQSLOD=2.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:471,0,386
chr5	89954184	rs11958484	T	C	208.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.060e-01;DB;DP=13;ExcessHet=3.9794;FS=2.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=0.054;SOR=1.981;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,2:13:37:37,0,347
chr5	89968626	rs1028191	A	T	3433.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-01;DB;DP=36;ExcessHet=3.9794;FS=0.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.94;ReadPosRankSum=0.00;SOR=0.602;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:326,0,572
chr5	89975629	rs6863710	T	A	568.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.73;ReadPosRankSum=1.65;SOR=3.126;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr5	89979380	rs4916683	T	C	681.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.720e-01;DB;DP=55;ExcessHet=3.0103;FS=2.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.39;ReadPosRankSum=-8.170e-01;SOR=1.130;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:690,0,646
chr5	89979589	rs4916684	G	A	8328.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DB;DP=121;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=1.36;SOR=0.694;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,61:121:99:1616,0,1527
chr5	89979698	rs4916685	C	T	2684.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=95;ExcessHet=3.9794;FS=1.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=1.69;SOR=0.597;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,42:95:99:1151,0,1336
chr5	89985882	rs10037067	A	G	400.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.480e-01;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.10;ReadPosRankSum=-1.070e-01;SOR=0.527;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,18:44:99:409,0,633
chr5	89987131	rs34877452	CAT	C	61.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.58;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:3:70,0,3
chr5	89988412	rs10040165	G	A	701.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.502e+00;DB;DP=43;ExcessHet=3.0103;FS=1.501;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.31;ReadPosRankSum=0.037;SOR=0.342;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,24:43:99:710,0,555
chr5	89988504	rs2366926	A	G	1055.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.641;DB;DP=90;ExcessHet=3.0103;FS=0.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-3.980e-01;SOR=0.566;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,40:90:99:1064,0,1329
chr5	89989779	rs16876822	G	A	1625.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=-2.800e-02;SOR=0.669;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,55:106:99:1634,0,1255
chr5	89990324	rs1878878	A	G	8673.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.020;DB;DP=141;ExcessHet=3.9794;FS=1.169;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.27;ReadPosRankSum=2.57;SOR=0.792;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,84:141:99:2366,0,1485
chr5	89990545	rs10068473	C	A	5766.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=89;ExcessHet=3.9794;FS=1.082;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=-1.480e-01;SOR=0.592;VQSLOD=6.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,44:89:99:1241,0,1081
chr5	89993045	rs10942604	T	C	413.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.90;DB;DP=22;ExcessHet=3.0103;FS=2.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.78;ReadPosRankSum=-2.640e-01;SOR=1.609;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:422,0,282
chr5	89999954	rs10942605	T	C	177.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=7;ExcessHet=3.9794;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=0.792;SOR=2.066;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,1:7:24:0|1:89999954_T_C:24,0,460:89999954
chr5	89999968	rs10942606	A	G	258.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.9794;FS=3.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.319;SOR=2.303;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:64:0|1:89999954_T_C:64,0,457:89999954
chr5	90001988	rs1160121	G	T	690.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.041;DB;DP=17;ExcessHet=6.9897;FS=8.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=0.210;SOR=2.184;VQSLOD=19.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:306,0,249
chr5	90002220	rs60522638	C	CT	566.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DB;DP=20;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.12;ReadPosRankSum=0.472;SOR=0.789;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,6:20:99:99,0,278
chr5	90007196	rs7732169	C	T	486.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=1.25;SOR=1.051;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:142,0,103
chr5	90012614	rs10067181	A	T	930.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=19;ExcessHet=6.9897;FS=3.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.62;ReadPosRankSum=0.00;SOR=1.802;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:317,0,286
chr5	90015792	rs6881412	C	T	3361.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.359;DB;DP=23;ExcessHet=3.0103;FS=1.839;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=0.819;SOR=1.395;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:472,0,239
chr5	90016129	rs6452906	A	G	665.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.610e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=1.04;SOR=1.697;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:64:64,0,107
chr5	90020868	rs7723259	A	C	4467.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=-2.220e-01;SOR=0.659;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,27:63:99:649,0,1016
chr5	90020923	rs16869042	T	G	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.000e-01;DB;DP=57;ExcessHet=3.0103;FS=3.765;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.74;ReadPosRankSum=1.69;SOR=1.251;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,22:57:99:507,0,938
chr5	90021499	rs4916815	G	T	359.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.35;ReadPosRankSum=1.25;SOR=0.468;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:119,0,242
chr5	90024735	rs2366928	G	A	2872.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.712e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=1.15;SOR=0.649;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:402,0,442
chr5	90049238	rs2438339	A	G	383.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.93;ReadPosRankSum=1.38;SOR=2.670;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:76,0,65
chr5	90052263	rs34894132	T	TC	300.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729e+00;DB;DP=54;ExcessHet=3.0103;FS=2.756;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.56;ReadPosRankSum=0.773;SOR=0.293;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,15:54:99:309,0,1080
chr5	90052289	rs10062026	G	A	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.920e-01;DB;DP=64;ExcessHet=3.0103;FS=1.071;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.93;ReadPosRankSum=-6.820e-01;SOR=0.546;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,16:64:99:324,0,1311
chr5	90052372	rs2438349	C	T	2360.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DB;DP=62;ExcessHet=3.9794;FS=2.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=1.34;SOR=0.532;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,14:62:99:212,0,1243
chr5	90053056	rs2443065	A	G	375.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.330e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.06;ReadPosRankSum=-1.060e+00;SOR=0.976;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,14:22:99:384,0,197
chr5	90059001	rs881289	T	A	2006.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.622e+00;DB;DP=25;ExcessHet=3.9794;FS=2.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.466;SOR=0.171;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:407,0,366
chr5	90059406	rs2049009	A	G	237.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=8;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.992;SOR=2.765;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:65:163,0,65
chr5	90059436	rs2443061	T	A	135.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.623;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.65;ReadPosRankSum=0.967;SOR=1.329;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:62:144,0,62
chr5	90074101	rs74694143	T	C	212.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=9;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=0.00;SOR=3.126;VQSLOD=18.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:90:221,0,90
chr5	90079820	rs17554631	A	G	128.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.83;ReadPosRankSum=0.960;SOR=1.022;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,6:22:99:137,0,411
chr5	90103785	rs2438373	T	G	1019.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.17;ReadPosRankSum=0.414;SOR=1.675;VQSLOD=23.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:498,36,0
chr5	90107108	rs2438374	A	G	5867.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=1.408;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1660,165,0
chr5	90111700	rs2443080	T	C	2857.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.26;SOR=2.425;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:819,72,0
chr5	90118985	rs12520043	A	G	320.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=-5.890e-01;SOR=3.056;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:13:329,0,13
chr5	90119324	rs2438378	G	A	6128.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.64;SOR=1.090;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1976,186,0
chr5	90150228	rs2438336	A	G	542.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.49;SOR=5.283;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr5	90151589	rs2247870	G	A	2137.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=0.849;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2154,200,0
chr5	90368596	rs9293558	C	T	1785.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.450e-01;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=1.21;SOR=0.807;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,13:26:99:329,0,339
chr5	90445648	.	C	CA	71.21	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=17.80;SOR=1.609;VQSLOD=2.45;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,4:4:12:84,12,0
chr5	90445829	rs35858094	T	TTC	1671.27	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.42;DB;DP=29;ExcessHet=1.5490;FS=1.953;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=3.18;SOR=0.990;VQSLOD=5.98;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:3,26:29:43:989,43,0
chr5	90449031	rs7726023	T	C	5658.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.700e-01;DB;DP=74;ExcessHet=3.0103;FS=3.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=-2.900e-02;SOR=1.152;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2479,221,0
chr5	90669352	rs6866923	A	C	139.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.99;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	90669400	rs6452952	A	T	1242.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.12;SOR=4.112;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:221,21,0
chr5	90671274	rs1363839	A	T	1541.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.785e+00;DB;DP=38;ExcessHet=6.9897;FS=0.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.030;SOR=0.859;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:343,0,604
chr5	93119893	rs6879620	G	A	852.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=4.712;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr5	93294451	.	C	CA	452.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DP=48;ExcessHet=3.0103;FS=2.098;MQ=60.00;MQRankSum=0.00;QD=9.42;ReadPosRankSum=0.701;SOR=0.402;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,23:48:99:461,0,534
chr5	93388777	rs148770534	T	TATAG	3544.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.490e-01;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.65;ReadPosRankSum=0.365;SOR=0.610;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:32:99:1498,102,0
chr5	93410244	rs7732578	C	T	1837.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.540;DB;DP=23;ExcessHet=3.9794;FS=4.348;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=-2.420e-01;SOR=0.281;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,22:23:41:699,41,0
chr5	93722050	rs29913	G	T	534.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211e+00;DB;DP=53;ExcessHet=3.0103;FS=3.809;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.08;ReadPosRankSum=0.787;SOR=0.336;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,24:53:99:543,0,813
chr5	93731985	rs308207	A	G	11671.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=1.374;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3853,351,0
chr5	93732334	rs308206	C	T	64.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=7;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.15;ReadPosRankSum=0.00;SOR=0.086;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:72:72,0,155
chr5	93798480	rs952664	T	C	107.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.47;ReadPosRankSum=-1.036e+00;SOR=1.022;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:70:116,0,70
chr5	93987532	rs6891545	C	A	248.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.290e-01;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-2.600e-02;SOR=0.846;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,10:26:99:257,0,461
chr5	93990099	rs11427225	G	GA	123.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.992;DB;DP=19;ExcessHet=3.0103;FS=2.350;MQ=60.00;MQRankSum=0.00;QD=6.52;ReadPosRankSum=0.041;SOR=0.180;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:131,0,163
chr5	93998112	rs10684163	G	GTTA	815.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;DB;DP=40;ExcessHet=3.0103;FS=1.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=0.623;SOR=0.446;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,21:40:99:824,0,870
chr5	94001476	rs10051931	A	G	1396.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225e+00;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=-2.150e-01;SOR=0.957;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:284,0,296
chr5	94006023	rs7709494	T	C	1543.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.290e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=-7.920e-01;SOR=0.598;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:399,42,0
chr5	94014800	rs1549179	T	A	2243.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.264e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.49;ReadPosRankSum=-1.003e+00;SOR=2.242;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:872,66,0
chr5	94022491	rs113089557	TTTAG	T	397.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.116;SOR=0.527;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,11:24:99:406,0,608
chr5	94027011	rs10078304	G	A	418.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=-1.068e+00;SOR=0.610;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:55:185,0,55
chr5	94027025	rs306571	A	G	817.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.33;SOR=2.303;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:333,30,0
chr5	94043353	rs7735924	G	T	3929.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=2.615;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1219,105,0
chr5	94043430	rs7737187	C	T	160.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.881e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=1.78;SOR=0.693;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:169,0,191
chr5	94046387	rs306573	A	G	2521.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.436e+00;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=0.333;SOR=0.568;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,20:26:99:587,0,137
chr5	94050702	rs10044797	G	A	302.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.79;ReadPosRankSum=0.045;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:96:183,0,96
chr5	94114594	rs255372	T	C	1715.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.28;SOR=4.712;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:204,18,0
chr5	94203211	rs159034	G	A	501.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.46;ReadPosRankSum=-6.740e-01;SOR=3.126;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,69
chr5	94230358	rs9885412	C	T	1091.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.750e-01;DB;DP=72;ExcessHet=3.0103;FS=0.889;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=-6.400e-01;SOR=0.576;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,42:72:99:1100,0,783
chr5	94267918	rs71944884	TA	T	76.12	PASS	AC=2;AF=1.00;AN=2;DB;DP=1;ExcessHet=3.0103;FS=0.000;MQ=59.23;QD=19.03;SOR=3.611;VQSLOD=2.70;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,1:1:3:20,3,0
chr5	94278129	rs293035	T	C	2046.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=18;ExcessHet=3.9794;FS=1.148;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=0.285;SOR=0.928;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:357,0,194
chr5	94278154	rs159351	C	T	1590.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700e-02;DB;DP=14;ExcessHet=3.9794;FS=5.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.25;ReadPosRankSum=-6.460e-01;SOR=1.946;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:328,0,145
chr5	94288758	rs17084335	C	T	94.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.56;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:103,0,30
chr5	94353024	rs12658252	T	C	826.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.450e-01;DB;DP=56;ExcessHet=3.0103;FS=4.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=1.46;SOR=0.319;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,31:56:99:835,0,655
chr5	94404660	rs11357469	CT	C	274.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=-9.670e-01;SOR=4.047;VQSLOD=3.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:14:40,0,14
chr5	94619545	rs5869672	G	GC	3440.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.96;SOR=1.214;VQSLOD=3.24;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1103,93,0
chr5	94654187	rs255983	C	T	6235.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.457e+00;DB;DP=100;ExcessHet=3.0103;FS=0.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.62;ReadPosRankSum=-1.045e+00;SOR=0.642;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2917,299,0
chr5	94670706	rs148964669	T	TTTTCCTTCCTTCCTTCCTTTCC	3785.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.375;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=37.02;ReadPosRankSum=-5.670e-01;SOR=1.249;VQSLOD=5.52;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,27:27:80:1239,80,0
chr5	94670826	rs5869674	T	TTTC	720.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.303;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.76;ReadPosRankSum=0.180;SOR=0.813;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:441,30,0
chr5	94670850	rs141984431	CTCTT	C	266.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-02;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.00;SOR=0.330;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:147,0,247
chr5	94726879	rs2560266	C	T	724.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.360;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.615;SOR=0.686;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:246,0,535
chr5	94728631	rs2546097	G	T	3764.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.32;SOR=2.121;VQSLOD=19.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:974,90,0
chr5	94741741	rs253714	C	A	3079.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.021;DB;DP=43;ExcessHet=3.0103;FS=1.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.75;ReadPosRankSum=-6.750e-01;SOR=0.481;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1425,129,0
chr5	94741837	rs253715	A	G	6419.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=1.114;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2523,234,0
chr5	94741973	rs253716	T	G	4367.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.66;SOR=2.379;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1492,126,0
chr5	94772540	rs6878669	C	T	4151.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=0.781;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1136,117,0
chr5	94784397	.	AT	A	398.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.868;DP=23;ExcessHet=6.9897;FS=8.317;MQ=59.72;MQRankSum=0.00;QD=6.65;ReadPosRankSum=-4.390e-01;SOR=1.845;VQSLOD=3.31;culprit=FS	GT:AD:DP:GQ:PL	0/1:9,9:23:99:130,0,211
chr5	94814015	rs139074002	T	C	652.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.678;DB;DP=41;ExcessHet=3.0103;FS=1.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.91;ReadPosRankSum=1.54;SOR=0.465;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,25:41:99:661,0,373
chr5	94857921	rs145518834	T	C	1448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=122;ExcessHet=3.0103;FS=5.608;MQ=60.00;MQRankSum=0.00;QD=11.87;ReadPosRankSum=-4.940e-01;SOR=1.178;VQSLOD=21.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,61:122:99:1457,0,1502
chr5	94903575	.	CT	C	32.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.130e-01;DP=31;ExcessHet=3.0103;FS=1.666;MQ=60.00;MQRankSum=0.00;QD=1.08;ReadPosRankSum=0.946;SOR=0.265;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,5:31:41:41,0,582
chr5	94936712	.	C	T	671.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DP=62;ExcessHet=3.0103;FS=2.338;MQ=60.00;MQRankSum=0.00;QD=10.83;ReadPosRankSum=-9.560e-01;SOR=1.140;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:680,0,880
chr5	94988482	rs213508	G	A	164.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.53;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:72,0,36
chr5	94988612	rs213509	A	G	711.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.04;DB;DP=26;ExcessHet=3.9794;FS=1.497;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=1.27;SOR=0.402;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:359,0,431
chr5	95011426	rs2548125	A	G	379.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.263;DB;DP=17;ExcessHet=3.9794;FS=3.174;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-1.400e-01;SOR=0.080;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:248,0,277
chr5	95018382	rs34895	G	T	1743.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.103e+00;DB;DP=60;ExcessHet=3.9794;FS=2.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.21;ReadPosRankSum=1.89;SOR=0.478;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,26:60:99:709,0,1047
chr5	95115959	rs41276257	C	T	595.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=-9.970e-01;SOR=0.752;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:604,0,551
chr5	95119328	rs9314157	A	G	461.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.23;ReadPosRankSum=-3.190e-01;SOR=0.340;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:62:198,0,62
chr5	95119842	rs11738579	G	A	62.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:70,0,68
chr5	95124328	rs3822753	T	G	5626.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.60;DB;DP=66;ExcessHet=3.0103;FS=1.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=0.611;SOR=0.937;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:962,0,921
chr5	95128513	rs114131374	A	G	117.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.28;SOR=2.833;VQSLOD=20.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr5	95128742	rs79061390	G	T	699.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.511e+00;DB;DP=71;ExcessHet=3.0103;FS=3.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.85;ReadPosRankSum=-3.500e-02;SOR=0.346;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,33:71:99:708,0,1044
chr5	95129415	rs113237047	TA	T	43.57	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:21:52,0,21
chr5	95129520	rs187977965	G	A	230.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=1.44;SOR=1.179;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:239,0,265
chr5	95129860	rs78379776	G	A	126.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=2.26;SOR=0.527;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:135,0,163
chr5	95145133	rs17085125	A	G	121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=0.738;SOR=1.075;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:130,0,298
chr5	95152313	rs4561	A	G	1756.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.824;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=0.749;SOR=0.707;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,30:74:99:650,0,998
chr5	95192736	.	CT	C	275.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.589;SOR=0.435;VQSLOD=7.22;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:56:57,0,56
chr5	95224700	rs199699795	GA	G	773.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.982;DB;DP=49;ExcessHet=6.9897;FS=1.454;MQ=59.98;MQRankSum=0.00;QD=6.91;ReadPosRankSum=1.74;SOR=0.844;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,25:49:99:418,0,385
chr5	95226655	rs6556893	A	G	878.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.71;DB;DP=33;ExcessHet=3.9794;FS=1.012;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=0.075;SOR=0.869;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,12:33:99:384,0,495
chr5	95233795	rs61457748	GA	G	520.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.167;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=8.40;ReadPosRankSum=-2.670e-01;SOR=0.781;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,10:27:99:235,0,250
chr5	95234350	rs3777204	A	G	1022.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=40;ExcessHet=3.9794;FS=1.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.098;SOR=0.450;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,15:40:99:413,0,649
chr5	95234377	rs3777203	C	T	736.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=37;ExcessHet=3.9794;FS=10.515;MQ=60.00;MQRankSum=0.00;QD=10.37;ReadPosRankSum=1.16;SOR=0.808;VQSLOD=17.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,11:37:99:268,0,734
chr5	95234392	rs3777202	A	C	721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=38;ExcessHet=3.9794;FS=8.456;MQ=60.00;MQRankSum=0.00;QD=10.30;ReadPosRankSum=1.77;SOR=0.784;VQSLOD=19.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,10:38:99:262,0,813
chr5	95234630	rs3777201	G	T	363.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=14;ExcessHet=1.5490;FS=10.620;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=0.973;SOR=3.702;VQSLOD=12.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:162,0,289
chr5	95236415	rs17085249	G	A	568.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=35;ExcessHet=3.9794;FS=2.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.00;ReadPosRankSum=-9.600e-02;SOR=0.568;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,10:35:99:230,0,686
chr5	95236459	rs3815768	C	T	396.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.075;DB;DP=29;ExcessHet=3.9794;FS=2.295;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.91;ReadPosRankSum=0.755;SOR=0.967;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,6:29:99:122,0,781
chr5	95249821	rs142346614	CAT	C	156.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.36;ReadPosRankSum=-5.240e-01;SOR=1.981;VQSLOD=7.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:31:165,0,31
chr5	95255379	rs4642392	G	A	771.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.479e+00;DB;DP=18;ExcessHet=3.9794;FS=1.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.93;ReadPosRankSum=1.47;SOR=1.448;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:346,0,251
chr5	95414786	rs5869706	T	TTAAAA	1648.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.390e-01;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=0.125;SOR=0.633;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,14:30:99:618,0,928
chr5	95732986	rs271920	T	C	1698.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.320e-01;DB;DP=40;ExcessHet=6.9897;FS=2.924;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.871;SOR=1.116;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,12:40:99:250,0,794
chr5	95733112	rs6233	A	G	4117.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.149;DB;DP=112;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.768;SOR=0.682;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,49:112:99:1119,0,1562
chr5	95746355	rs156020	T	G	1380.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.54;DB;DP=34;ExcessHet=3.9794;FS=1.177;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.86;ReadPosRankSum=0.982;SOR=0.925;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:540,0,499
chr5	95761432	rs11310306	TA	T	1133.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.459;DB;DP=21;ExcessHet=3.9794;FS=2.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-7.830e-01;SOR=1.332;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,12:21:99:247,0,159
chr5	95768530	rs725522	G	A	254.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=-1.401e+00;SOR=1.270;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:263,0,179
chr5	95865526	rs13161802	G	A	590.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.48;SOR=5.549;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr5	95998357	.	G	GGCAGGTGGCAGCAGGTGGCT	766.89	PASS	AC=2;AF=1.00;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.06;SOR=2.833;VQSLOD=4.84;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:209,15,0
chr5	96031718	.	G	GT	263.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DP=23;ExcessHet=3.0103;FS=1.935;MQ=60.00;MQRankSum=0.00;QD=11.45;ReadPosRankSum=0.216;SOR=0.320;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:272,0,303
chr5	96066652	rs151904	C	T	1565.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.790e-01;DB;DP=57;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=-2.720e-01;SOR=0.740;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:750,0,825
chr5	96071780	rs13183352	A	G	604.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.69;DB;DP=20;ExcessHet=3.9794;FS=5.547;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.246;SOR=2.160;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:200,0,486
chr5	96072157	rs10045707	A	T	502.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.69;ReadPosRankSum=0.887;SOR=1.284;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:17:193,0,17
chr5	96072162	rs34594086	AAAAC	A	470.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.67;ReadPosRankSum=0.887;SOR=1.329;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:36:186,0,36
chr5	96076487	rs7724759	G	A	974.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=39;ExcessHet=3.9794;FS=1.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=2.41;SOR=0.502;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:541,0,508
chr5	96078309	rs26503	G	A	913.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=48;ExcessHet=3.9794;FS=1.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.78;ReadPosRankSum=0.389;SOR=0.899;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,17:48:99:390,0,818
chr5	96079402	rs26506	C	T	2518.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=100;ExcessHet=3.9794;FS=5.428;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.679;SOR=0.779;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,55:100:99:1334,0,1065
chr5	96082401	rs27851	C	T	1474.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.25;SOR=5.136;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:349,30,0
chr5	96082494	rs26508	C	T	223.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.40;SOR=3.912;VQSLOD=18.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr5	96086334	rs754615	G	C	2575.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DB;DP=84;ExcessHet=3.9794;FS=4.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=1.62;SOR=0.545;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,45:84:99:1117,0,913
chr5	96086690	rs1862609	G	A	72.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.35;SOR=2.303;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr5	96089658	rs27583	G	A	1356.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.294;DB;DP=18;ExcessHet=3.9794;FS=1.305;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=0.222;SOR=0.412;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:218,0,209
chr5	96101031	rs137862146	TAA	T	277.64	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.204e+00;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=-1.306e+00;SOR=0.818;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:1,11:12:9:1|1:96101031_TAA_T:293,9,0:96101031
chr5	96101066	rs11399505	T	TA	123.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=12;ExcessHet=3.0103;FS=3.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=0.079;SOR=2.303;VQSLOD=6.28;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,5:12:99:0|1:96101031_TAA_T:132,0,255:96101031
chr5	96101944	rs27524	A	G	1641.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840e-01;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=59.91;MQRankSum=1.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=0.231;SOR=0.641;VQSLOD=2.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,35:67:99:871,0,761
chr5	96101959	rs27525	C	T	1663.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DB;DP=62;ExcessHet=3.9794;FS=5.604;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.817;SOR=1.333;VQSLOD=6.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,29:62:99:776,0,838
chr5	96102074	rs26480	G	A	1073.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=6.666;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr5	96103352	rs26481	C	T	136.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.292e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.03;ReadPosRankSum=0.992;SOR=0.330;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:145,0,101
chr5	96107202	rs27689	G	T	4113.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.055e+00;DB;DP=39;ExcessHet=3.0103;FS=0.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=2.38;SOR=0.861;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1342,116,0
chr5	96111927	rs142866043	T	TAGCCCATTCATGAAAA	695.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.232e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.11;ReadPosRankSum=-1.680e-01;SOR=1.387;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,16:19:99:704,0,466
chr5	96112083	rs1065407	T	G	1112.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.790e-01;DB;DP=89;ExcessHet=3.0103;FS=4.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-1.698e+00;SOR=0.358;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,47:89:99:1121,0,1046
chr5	96117300	rs27043	G	A	1387.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.550e-01;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.69;ReadPosRankSum=0.267;SOR=1.002;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,9:20:99:273,0,290
chr5	96117555	rs61745685	C	T	803.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e+00;DB;DP=75;ExcessHet=3.0103;FS=6.451;MQ=59.97;MQRankSum=1.01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.737;SOR=0.260;VQSLOD=1.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:38,37:75:99:812,0,1159
chr5	96117712	.	ATTTT	A	335.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.230e-01;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.04;ReadPosRankSum=0.699;SOR=1.552;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:10:99:148,0,118
chr5	96118852	rs27044	G	C	5514.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DB;DP=105;ExcessHet=1.5490;FS=1.837;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.07;ReadPosRankSum=0.625;SOR=0.850;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,45:105:99:1113,0,1588
chr5	96119044	rs62364748	T	A	465.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-02;DB;DP=33;ExcessHet=3.0103;FS=3.812;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.091;SOR=0.193;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:474,0,395
chr5	96119159	rs11429353	C	CT	1025.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=6.593;VQSLOD=6.63;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr5	96119522	rs72108773	TACACACACACACACAC	T	114.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.58;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:99:0|1:96119522_TACACACACACACACAC_T:123,0,154:96119522
chr5	96119579	rs70981840	A	ACT	1008.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.731;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.13;ReadPosRankSum=1.33;SOR=1.688;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:96119522_TACACACACACACACAC_T:324,0,258:96119522
chr5	96121370	rs11386832	T	TA	628.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=29;ExcessHet=3.9794;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.52;ReadPosRankSum=0.172;SOR=1.329;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,12:29:99:282,0,497
chr5	96121715	rs469758	C	T	306.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.509e+00;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=-1.083e+00;POSITIVE_TRAIN_SITE;QD=10.94;ReadPosRankSum=-5.340e-01;SOR=0.741;VQSLOD=2.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,12:28:99:315,0,500
chr5	96122260	rs30379	T	G	487.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.965;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=0.324;SOR=0.727;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,21:50:99:496,0,690
chr5	96122281	rs30380	A	C	487.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=45;ExcessHet=3.0103;FS=1.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=0.782;SOR=0.519;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,19:45:99:496,0,665
chr5	96124330	rs30187	T	C	1670.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.523;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=1.58;SOR=0.773;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,59:99:99:1679,0,964
chr5	96124447	rs30186	G	C	1388.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.640e-01;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=0.475;SOR=0.756;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,56:117:99:1397,0,1594
chr5	96125910	rs26510	C	T	578.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=30;ExcessHet=3.0103;FS=5.721;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=1.16;SOR=0.069;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,19:30:99:587,0,331
chr5	96126197	rs27710	A	G	960.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.362;DB;DP=96;ExcessHet=3.0103;FS=0.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.00;ReadPosRankSum=-7.420e-01;SOR=0.651;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,39:96:99:969,0,1516
chr5	96126308	rs27529	A	G	728.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;DB;DP=69;ExcessHet=3.0103;FS=2.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=1.13;SOR=1.112;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,29:69:99:737,0,1080
chr5	96127905	rs27640	T	C	989.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.865;DB;DP=66;ExcessHet=3.0103;FS=2.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.99;ReadPosRankSum=-1.950e-01;SOR=0.446;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,38:66:99:998,0,631
chr5	96128022	rs80144245	T	C	167.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=14;ExcessHet=3.0103;FS=4.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.845;SOR=0.061;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:176,0,336
chr5	96129512	rs27434	A	G	314.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.27;ReadPosRankSum=-5.390e-01;SOR=0.576;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,13:38:99:323,0,661
chr5	96132795	rs998509	G	A	735.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=55;ExcessHet=3.0103;FS=3.850;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-1.432e+00;SOR=1.292;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,28:55:99:744,0,635
chr5	96136340	rs62364753	A	C	67.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:28:76,0,28
chr5	96139250	rs26653	C	G	1136.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.939;DB;DP=114;ExcessHet=3.0103;FS=0.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-3.350e-01;SOR=0.809;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,46:114:99:1145,0,1871
chr5	96215680	rs41506651	C	T	2063.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.867;DB;DP=141;ExcessHet=3.0103;FS=0.629;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.75;SOR=0.636;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,81:141:99:2072,0,1386
chr5	96219738	.	TTATCTATCTATC	T,TTATC	824.69	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.78;QD=29.86;SOR=6.184;VQSLOD=4.87;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,4:8:99:332,168,156,163,0,151
chr5	96222183	rs2303208	A	G	166.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.08;SOR=3.258;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:96222183_A_G:90,6,0:96222183
chr5	96222185	rs2303209	C	T	164.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.25;SOR=3.258;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:96222183_A_G:90,6,0:96222183
chr5	96222627	rs13189819	G	A	1764.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.140e-01;DB;DP=16;ExcessHet=3.0103;FS=5.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.74;ReadPosRankSum=-3.860e-01;SOR=2.157;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:652,48,0
chr5	96230858	rs3832368	T	TA	379.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.14;SOR=5.421;VQSLOD=5.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:85,9,0
chr5	96230883	rs371137761	A	ATT	1249.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.876e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.78;ReadPosRankSum=-1.063e+00;SOR=3.086;VQSLOD=5.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:286,21,0
chr5	96231000	rs2549782	G	T	3910.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.680e-01;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.14;ReadPosRankSum=0.938;SOR=0.654;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1418,140,0
chr5	96232142	rs2548538	T	A	4303.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.656;DB;DP=58;ExcessHet=3.0103;FS=0.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.32;ReadPosRankSum=-3.390e-01;SOR=0.804;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1885,174,0
chr5	96232222	rs2548537	G	C	4402.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.874e+00;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.46;ReadPosRankSum=0.921;SOR=0.668;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1728,170,0
chr5	96232250	rs34701361	G	GAAA	5935.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.04;DB;DP=49;ExcessHet=3.0103;FS=0.803;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.24;ReadPosRankSum=-1.537e+00;SOR=0.805;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,49:49:99:2216,150,0
chr5	96232286	rs2549785	C	T	3765.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.281;DB;DP=40;ExcessHet=3.0103;FS=0.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=-1.099e+00;SOR=0.832;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1447,120,0
chr5	96232345	rs56321917	CAT	C	3257.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=0.927;VQSLOD=5.17;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1534,105,0
chr5	96232402	rs2548536	T	A	2400.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.430e-01;DB;DP=30;ExcessHet=3.0103;FS=2.495;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.60;ReadPosRankSum=0.087;SOR=0.385;VQSLOD=7.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:991,90,0
chr5	96235896	rs2248374	A	G	8214.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.188;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.83;ReadPosRankSum=-6.460e-01;SOR=0.740;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3686,345,0
chr5	96237114	rs187265	C	G	3050.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.701e+00;DB;DP=43;ExcessHet=3.0103;FS=6.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.80;ReadPosRankSum=0.876;SOR=0.243;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1467,129,0
chr5	96237326	rs2287988	G	A	5429.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.700e-02;DB;DP=76;ExcessHet=3.0103;FS=1.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=1.11;SOR=0.526;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2480,228,0
chr5	96237413	rs171647	C	T	1723.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.254e+00;DB;DP=11;ExcessHet=3.0103;FS=2.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.80;ReadPosRankSum=0.686;SOR=1.670;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:463,33,0
chr5	96239294	rs1423568	A	G	3013.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.039;DB;DP=43;ExcessHet=3.0103;FS=3.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-1.611e+00;SOR=1.215;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1404,129,0
chr5	96244549	rs2549794	C	T	676.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.75;ReadPosRankSum=0.936;SOR=2.737;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:353,27,0
chr5	96244581	.	CTCTA	C	165.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.72;ReadPosRankSum=0.475;SOR=1.302;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,5:17:99:174,0,489
chr5	96244585	rs2548527	A	C,*	1185.71	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-1.051e+00;DB;DP=17;ExcessHet=3.0103;FS=2.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=-1.269e+00;SOR=0.212;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,12,5:17:99:604,210,174,417,0,489
chr5	96244638	rs2549795	A	G	3072.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.783;DB;DP=33;ExcessHet=3.0103;FS=2.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.82;ReadPosRankSum=1.47;SOR=1.059;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1211,99,0
chr5	96245343	rs2549796	C	T	5692.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.28;SOR=0.927;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2819,281,0
chr5	96245439	rs1056893	C	T	6898.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.480e-01;DB;DP=93;ExcessHet=3.0103;FS=1.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=1.54;SOR=0.805;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2922,279,0
chr5	96245518	rs2549797	A	G	3182.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.31;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.88;ReadPosRankSum=-2.915e+00;SOR=0.629;VQSLOD=22.36;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1235,105,0
chr5	96245617	rs2548526	T	C	778.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.943e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=-1.540e-01;SOR=1.308;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:358,30,0
chr5	96248886	rs1363975	A	G	1087.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.13;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.99;ReadPosRankSum=1.12;SOR=2.765;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:301,21,0
chr5	96249115	rs2255546	C	T	9493.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.134e+00;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=1.17;SOR=0.634;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:3882,398,0
chr5	96249323	rs2255633	G	A	617.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.980e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.86;ReadPosRankSum=-9.060e-01;SOR=2.400;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr5	96249351	rs2255634	T	A	413.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.58;ReadPosRankSum=0.328;SOR=2.448;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:64,6,0
chr5	96249378	rs2255637	A	C	366.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.31;ReadPosRankSum=1.65;SOR=2.494;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr5	96251188	rs10546363	ATT	A	331.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=38.73;SOR=2.833;VQSLOD=4.10;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	96322105	rs75121806	A	G	103.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.33;ReadPosRankSum=-6.080e-01;SOR=0.412;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:112,0,206
chr5	96329008	rs201273179	ATAT	A	369.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.79;ReadPosRankSum=0.180;SOR=1.981;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	96329857	rs27304	G	T	1264.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.64;SOR=6.869;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:544,39,0
chr5	96332085	rs3836862	TC	T	9419.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.839;DB;DP=121;ExcessHet=3.0103;FS=0.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=1.50;SOR=0.658;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,120:121:99:3787,332,0
chr5	96339102	rs3214461	AC	A	5244.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=59;ExcessHet=3.0103;FS=0.826;MQ=60.00;MQRankSum=0.00;QD=25.84;ReadPosRankSum=-7.460e-01;SOR=0.624;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,56:59:99:2159,177,0
chr5	96339273	rs27613	T	G	6894.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.890e-01;DB;DP=68;ExcessHet=3.0103;FS=2.082;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=-6.620e-01;SOR=0.905;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2169,204,0
chr5	96342077	rs3835054	TA	T	1809.03	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.646;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=18.65;ReadPosRankSum=1.11;SOR=0.732;VQSLOD=5.96;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,17:20:15:364,0,15
chr5	96363407	rs27300	C	T	5141.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.117;DB;DP=75;ExcessHet=3.0103;FS=3.791;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.37;ReadPosRankSum=-2.220e-01;SOR=1.010;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2364,225,0
chr5	96364063	rs27712	C	T	9561.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.881;DB;DP=116;ExcessHet=3.0103;FS=2.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.61;ReadPosRankSum=-3.800e-02;SOR=0.936;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3689,347,0
chr5	96460566	rs2112179	G	A	31.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:40,0,31
chr5	96507204	rs2432090	T	C	97.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=3.010;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.81;ReadPosRankSum=1.67;SOR=1.911;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:106,0,157
chr5	96512683	rs2544771	A	G	566.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.25;ReadPosRankSum=0.00;SOR=0.836;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:151,0,145
chr5	96512865	rs2548319	T	A	8905.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=95;ExcessHet=3.9794;FS=1.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.60;ReadPosRankSum=1.34;SOR=0.591;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,57:95:99:0|1:96512865_T_A:2255,0,2128:96512865
chr5	96512871	rs2544772	T	A	9184.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=102;ExcessHet=3.9794;FS=2.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=1.06;SOR=0.558;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:42,60:102:99:0|1:96512865_T_A:2327,0,2208:96512865
chr5	96513627	rs112606258	A	T	344.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.880e-01;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.48;ReadPosRankSum=0.861;SOR=0.984;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:353,0,608
chr5	96514982	rs6896160	G	A	981.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.440e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.86;ReadPosRankSum=0.189;SOR=2.448;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,107
chr5	96519094	rs3806945	A	G	4222.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.73;DB;DP=36;ExcessHet=3.0103;FS=2.320;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=2.68;SOR=1.179;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,20:36:99:738,0,505
chr5	98109828	rs2547973	G	A	1085.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.738e+00;DB;DP=131;ExcessHet=3.0103;FS=1.472;MQ=60.00;MQRankSum=0.00;QD=8.28;ReadPosRankSum=-2.230e+00;SOR=0.897;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,50:131:99:1094,0,2247
chr5	98109838	rs2662263	A	C	12302.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.21;SOR=0.950;VQSLOD=19.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4262,369,0
chr5	98110073	rs1828168	A	C	48.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.36;ReadPosRankSum=-9.920e-01;SOR=0.223;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:57:57,0,191
chr5	98115828	rs2302983	A	G	351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.720e-01;DB;DP=23;ExcessHet=3.0103;FS=6.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.062;SOR=0.061;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:360,0,291
chr5	98115932	rs2250807	G	A	199.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=1.07;SOR=0.859;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:141,0,99
chr5	98192545	rs692759	T	C	827.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.70;ReadPosRankSum=1.90;SOR=1.609;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:307,21,0
chr5	98194981	rs113653010	T	C	57.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.33;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,72
chr5	98199077	rs10069735	T	C	783.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.660e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=0.135;SOR=1.981;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:35:409,35,0
chr5	98205326	rs112852027	G	GCA,GCACA	1833.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.470e-01;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.86;MQRankSum=0.00;QD=21.83;ReadPosRankSum=-5.960e-01;SOR=0.537;VQSLOD=5.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,11,5:16:99:556,156,106,318,0,299
chr5	98208400	rs6872073	T	C	176.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.967;SOR=0.551;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:79,0,34
chr5	98208429	rs34487	A	T	141.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=-5.240e-01;SOR=1.609;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr5	98210690	rs7718898	A	C	2045.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.54;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.62;ReadPosRankSum=0.406;SOR=0.642;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1337,129,0
chr5	98212033	rs10044279	G	A	337.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.609;DB;DP=21;ExcessHet=3.0103;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-8.530e-01;SOR=0.126;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:346,0,232
chr5	98216956	.	CTT	C	344.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-01;DP=8;ExcessHet=6.9897;FS=10.757;MQ=59.72;MQRankSum=0.00;QD=19.14;ReadPosRankSum=0.480;SOR=1.577;VQSLOD=2.74;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,3:8:43:75,0,43
chr5	98230221	rs28557210	T	C	1083.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DB;DP=23;ExcessHet=3.9794;FS=0.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=1.34;SOR=0.507;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,10:23:99:247,0,364
chr5	98236831	rs7702352	T	C	3003.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=90;ExcessHet=3.9794;FS=15.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.47;ReadPosRankSum=-4.770e-01;SOR=0.340;VQSLOD=13.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,47:90:99:1436,0,1068
chr5	98858121	.	C	CACAT	1742.14	PASS	AC=2;AF=1.00;AN=2;DP=29;ExcessHet=0.4576;FS=0.000;MQ=58.32;QD=29.78;SOR=1.460;VQSLOD=4.77;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:99:1|1:98858121_C_CACAT:1759,122,0:98858121
chr5	98858122	rs2963616	G	GCCGGCATTCATTCT	3128.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=57.39;QD=28.55;SOR=1.308;VQSLOD=4.57;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,32:32:99:1|1:98858121_C_CACAT:1759,122,0:98858121
chr5	98858509	rs2846004	G	A	116.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=84;ExcessHet=3.0103;FS=4.628;MQ=51.69;MQRankSum=-4.746e+00;NEGATIVE_TRAIN_SITE;QD=1.38;ReadPosRankSum=-5.430e-01;SOR=1.532;VQSLOD=-3.433e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,12:84:99:125,0,2023
chr5	98858987	rs62374994	A	G	72.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=40.00;QD=25.17;SOR=2.303;VQSLOD=-4.679e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	98859960	rs2511949	A	G	5850.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=0.4576;FS=0.000;MQ=58.24;QD=33.82;SOR=0.992;VQSLOD=2.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3072,276,0
chr5	98860102	rs150071328	A	G	2815.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=0.4576;FS=0.000;MQ=54.86;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.090;VQSLOD=3.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2832,261,0
chr5	98860361	rs2511950	T	G	2383.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=40.89;POSITIVE_TRAIN_SITE;QD=33.10;SOR=2.348;VQSLOD=-2.495e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,48:48:99:1|1:98860361_T_G:2230,151,0:98860361
chr5	98860368	rs2511951	A	G	2557.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=54;ExcessHet=0.4576;FS=0.000;MQ=43.10;QD=27.24;SOR=2.507;VQSLOD=-3.694e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,54:54:99:1|1:98860361_T_G:2367,163,0:98860361
chr5	98860769	rs74885795	C	T	1654.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=52.50;QD=31.83;SOR=1.036;VQSLOD=-4.094e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:92:954,92,0
chr5	98868275	rs4596426	G	A	2164.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=47.36;QD=31.22;SOR=3.690;VQSLOD=-1.872e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1073,87,0
chr5	98869994	rs2947035	A	G	1337.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=38.29;POSITIVE_TRAIN_SITE;QD=33.45;SOR=3.258;VQSLOD=-5.012e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:60:1|1:98869992_A_C:654,60,0:98869992
chr5	98870188	rs62375026	A	G	1379.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=58.95;QD=33.66;SOR=1.666;VQSLOD=3.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:730,66,0
chr5	99401928	.	G	A	92.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DP=16;ExcessHet=3.0103;FS=2.933;MQ=41.83;MQRankSum=-3.256e+00;QD=5.77;ReadPosRankSum=2.17;SOR=2.093;VQSLOD=-5.111e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:101,0,282
chr5	99402103	.	C	T	33.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DP=8;ExcessHet=3.0103;FS=0.000;MQ=43.62;MQRankSum=-2.100e+00;QD=4.16;ReadPosRankSum=-3.190e-01;SOR=1.445;VQSLOD=-3.874e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:42:42,0,150
chr5	99715137	rs2617354	C	A	2408.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.737;DB;DP=85;ExcessHet=3.9794;FS=3.745;MQ=59.98;MQRankSum=1.08;POSITIVE_TRAIN_SITE;QD=14.68;ReadPosRankSum=1.96;SOR=1.000;VQSLOD=1.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,45:85:99:1061,0,913
chr5	99715199	rs2614436	T	C	8205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=59.53;POSITIVE_TRAIN_SITE;QD=31.44;SOR=0.814;VQSLOD=4.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,103:103:99:3160,309,0
chr5	99715267	rs2614437	C	T	2778.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=80;ExcessHet=3.9794;FS=0.573;MQ=53.65;MQRankSum=-1.110e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=-1.180e-01;SOR=0.612;VQSLOD=-1.640e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,42:80:99:1185,0,964
chr5	99715295	rs2617352	A	G	6898.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=49.49;NEGATIVE_TRAIN_SITE;QD=30.57;SOR=0.736;VQSLOD=-2.017e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2397,201,0
chr5	99715465	.	G	T	170.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=38;ExcessHet=3.9794;FS=4.879;MQ=46.44;MQRankSum=-4.252e+00;QD=1.81;ReadPosRankSum=-5.600e-01;SOR=1.639;VQSLOD=-4.048e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,7:38:99:145,0,855
chr5	99715833	rs78916689	T	A	1835.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.193;DB;DP=157;ExcessHet=3.9794;FS=2.767;MQ=50.68;MQRankSum=-2.071e+00;NEGATIVE_TRAIN_SITE;QD=6.55;ReadPosRankSum=0.450;SOR=0.537;VQSLOD=-3.170e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,63:157:99:1275,0,2367
chr5	99725092	rs183024199	A	G	1938.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.675e+00;DB;DP=41;ExcessHet=1.5490;FS=2.873;MQ=49.78;MQRankSum=0.337;NEGATIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=0.140;SOR=1.056;VQSLOD=-2.742e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1313,123,0
chr5	99725376	rs28388868	C	T	4166.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.31;DB;DP=68;ExcessHet=0.4576;FS=3.579;MQ=55.18;MQRankSum=3.80;NEGATIVE_TRAIN_SITE;QD=32.30;ReadPosRankSum=2.25;SOR=1.093;VQSLOD=-2.850e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:7,61:68:24:1995,24,0
chr5	99725541	rs144533176	G	A	2066.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.800e-02;DB;DP=66;ExcessHet=0.4576;FS=0.000;MQ=53.58;MQRankSum=1.79;NEGATIVE_TRAIN_SITE;QD=31.30;ReadPosRankSum=1.31;SOR=0.271;VQSLOD=-2.687e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,65:66:99:2083,166,0
chr5	99725886	rs113030608	G	C	5541.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.119;DB;DP=56;ExcessHet=3.0103;FS=2.416;MQ=49.55;MQRankSum=-6.125e+00;QD=27.71;ReadPosRankSum=0.044;SOR=1.002;VQSLOD=-3.511e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1835,168,0
chr5	99726326	rs28479352	A	C	4298.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.151;DB;DP=52;ExcessHet=3.0103;FS=7.006;MQ=44.91;MQRankSum=-5.084e+00;QD=26.21;ReadPosRankSum=1.34;SOR=0.269;VQSLOD=-3.142e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1648,156,0
chr5	99726383	.	G	A	231.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.692e+00;DP=101;ExcessHet=3.9794;FS=2.904;MQ=50.10;MQRankSum=-3.800e+00;NEGATIVE_TRAIN_SITE;QD=1.35;ReadPosRankSum=-2.733e+00;SOR=1.062;VQSLOD=-4.199e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,17:101:99:183,0,2432
chr5	99726490	.	G	T	215.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.483e+00;DP=151;ExcessHet=3.0103;FS=3.787;MQ=43.18;MQRankSum=-4.000e+00;QD=1.43;ReadPosRankSum=-1.321e+00;SOR=1.071;VQSLOD=-4.417e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:122,29:151:99:224,0,3041
chr5	99727456	rs200230382	C	T	129.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=102;ExcessHet=3.0103;FS=2.311;MQ=46.95;MQRankSum=-2.007e+00;QD=1.27;ReadPosRankSum=0.446;SOR=1.118;VQSLOD=-3.849e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,16:102:99:138,0,2201
chr5	99727584	rs185374978	C	A	2591.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.306;DB;DP=114;ExcessHet=3.9794;FS=4.349;MQ=56.00;MQRankSum=-4.018e+00;NEGATIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.386;SOR=0.981;VQSLOD=-2.479e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,64:114:99:1855,0,1248
chr5	99727624	rs62389061	G	C	6199.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=131;ExcessHet=3.9794;FS=0.000;MQ=55.79;MQRankSum=-5.065e+00;QD=25.20;ReadPosRankSum=0.451;SOR=0.679;VQSLOD=-3.557e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:54,77:131:99:0|1:99727624_G_C:3106,0,2513:99727624
chr5	99727638	rs372051975	C	G	4027.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.391;DB;DP=134;ExcessHet=3.9794;FS=4.072;MQ=55.13;MQRankSum=-3.909e+00;NEGATIVE_TRAIN_SITE;QD=20.24;ReadPosRankSum=-3.920e-01;SOR=0.959;VQSLOD=-2.245e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:51,83:134:99:0|1:99727624_G_C:3204,0,2440:99727624
chr5	99728030	rs62389063	G	C	1741.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=40.08;QD=32.25;SOR=0.767;VQSLOD=-5.213e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:109,12,0
chr5	99728075	rs62389064	C	G	618.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=3;ExcessHet=3.0103;FS=2.454;MQ=41.84;MQRankSum=-2.368e+00;QD=12.37;ReadPosRankSum=-2.400e-01;SOR=0.388;VQSLOD=-4.122e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr5	99728095	rs62389065	A	G	678.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.61;DB;DP=4;ExcessHet=3.0103;FS=1.037;MQ=40.77;MQRankSum=-2.441e+00;QD=12.12;ReadPosRankSum=0.220;SOR=0.484;VQSLOD=-4.665e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
chr5	99728442	rs111733927	G	A	855.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=58.81;QD=32.89;SOR=1.697;VQSLOD=2.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:872,78,0
chr5	99897866	rs6874840	G	A	4861.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=84;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.10;SOR=0.776;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2367,251,0
chr5	99921841	rs2370612	G	C	3917.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.107;DB;DP=46;ExcessHet=3.0103;FS=11.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.89;ReadPosRankSum=0.509;SOR=1.559;VQSLOD=17.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1331,137,0
chr5	99922081	rs13876	G	A	855.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.830e-01;DB;DP=8;ExcessHet=3.0103;FS=5.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.75;ReadPosRankSum=-1.109e+00;SOR=3.383;VQSLOD=16.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:291,24,0
chr5	100147398	rs3076	C	T	107.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=2.833;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr5	101575091	rs62370437	C	T	1256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.443e+00;DB;DP=87;ExcessHet=3.0103;FS=0.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.44;ReadPosRankSum=-1.678e+00;SOR=0.573;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,48:87:99:1265,0,1022
chr5	101576243	rs1030236	A	C	141.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-7.120e-01;SOR=0.412;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:101576243_A_C:150,0,465:101576243
chr5	101576249	rs1030235	T	C	141.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.13;ReadPosRankSum=-7.120e-01;SOR=0.412;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:101576243_A_C:150,0,465:101576243
chr5	101592742	rs174414	T	C	1116.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158e+00;DB;DP=17;ExcessHet=3.9794;FS=5.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=1.11;SOR=0.132;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,5:17:99:120,0,436
chr5	101592809	rs261101	T	A	2799.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=49;ExcessHet=3.9794;FS=2.157;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.87;ReadPosRankSum=2.02;SOR=0.507;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,18:49:99:500,0,909
chr5	101593486	rs398228	C	A	491.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.9794;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.07;ReadPosRankSum=0.967;SOR=0.148;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:101593486_C_A:162,0,126:101593486
chr5	101593487	rs416734	T	G	491.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=6;ExcessHet=3.9794;FS=2.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=0.967;SOR=0.184;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:101593486_C_A:162,0,126:101593486
chr5	101593522	rs11746537	C	T	145.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.068e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=0.619;SOR=0.269;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:55:154,0,55
chr5	101595792	rs113859065	GTA	G	492.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=0.587;SOR=0.653;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,15:27:99:501,0,389
chr5	101595885	rs148885155	T	TGA	5157.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=41;ExcessHet=3.0103;FS=1.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.26;ReadPosRankSum=-7.860e-01;SOR=0.933;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1600,126,0
chr5	101596034	rs71586551	A	T	203.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.95;SOR=3.912;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr5	101606170	rs2600830	T	A	146.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.80;SOR=3.258;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	101606518	rs33922930	G	GA	897.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.010e-01;DB;DP=13;ExcessHet=3.9794;FS=3.322;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.33;ReadPosRankSum=1.48;SOR=0.253;VQSLOD=6.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,2:13:18:18,0,276
chr5	101627027	rs841929	T	C	2565.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=31;ExcessHet=3.9794;FS=5.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.54;ReadPosRankSum=0.810;SOR=1.545;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,11:31:99:341,0,578
chr5	101627411	rs2600824	C	T	1583.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.977e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.31;ReadPosRankSum=-8.320e-01;SOR=0.665;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:101627411_C_T:442,30,0:101627411
chr5	101627414	rs2548726	A	T	1344.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.128e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.02;ReadPosRankSum=-3.190e-01;SOR=0.470;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,7:10:99:0|1:101627411_C_T:202,0,105:101627411
chr5	101627435	rs841928	C	G	714.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.08;ReadPosRankSum=0.598;SOR=0.906;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:75:0|1:101627411_C_T:75,0,120:101627411
chr5	101631526	rs3114660	C	G	1389.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.048e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.06;ReadPosRankSum=2.19;SOR=0.585;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:178,0,329
chr5	101631592	rs3114659	A	G	4330.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.299;DB;DP=50;ExcessHet=3.0103;FS=7.846;MQ=59.97;MQRankSum=-1.173e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=24.06;ReadPosRankSum=0.920;SOR=1.416;VQSLOD=0.449;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1761,150,0
chr5	101631790	rs10479190	T	G	2015.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.890e+00;DB;DP=132;ExcessHet=3.0103;FS=2.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.27;ReadPosRankSum=0.083;SOR=0.858;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,77:132:99:2024,0,1452
chr5	101709314	rs6596480	T	C	437.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.33;ReadPosRankSum=0.319;SOR=3.611;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:103,0,31
chr5	101724307	rs6873305	A	T	216.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.11;ReadPosRankSum=0.431;SOR=1.863;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:67,0,64
chr5	101724448	rs10055840	G	C	1371.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.303e+00;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=59.89;MQRankSum=0.736;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=-3.500e-01;SOR=0.689;VQSLOD=2.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:37,18:55:99:413,0,1069
chr5	101726648	rs6874612	C	A	2074.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=32;ExcessHet=1.5490;FS=6.718;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.60;ReadPosRankSum=-2.270e-01;SOR=1.722;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:515,0,378
chr5	101726770	rs10073892	T	C	626.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.970e-01;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-7.240e-01;SOR=0.776;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,27:55:99:635,0,713
chr5	101726851	rs1452065	A	G	1059.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.155e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=0.132;SOR=0.859;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:150,0,434
chr5	101749053	rs10060468	C	A	60.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.674;SOR=0.693;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:69,0,78
chr5	101795490	rs11746217	A	G	4366.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=90;ExcessHet=1.5490;FS=0.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=1.22;SOR=0.782;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,46:90:99:1188,0,1095
chr5	101795556	rs11749193	G	A	680.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.835;DB;DP=45;ExcessHet=3.0103;FS=2.660;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.12;ReadPosRankSum=0.988;SOR=1.195;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,23:45:99:689,0,584
chr5	101811346	rs4703232	T	C	2535.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.690e+00;DB;DP=30;ExcessHet=1.5490;FS=2.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.31;ReadPosRankSum=1.67;SOR=0.267;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,23:30:99:715,0,206
chr5	101813238	rs10041525	T	C	762.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.17;ReadPosRankSum=0.545;SOR=1.528;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:139,0,106
chr5	101816228	rs10041652	G	A	215.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.198e+00;DB;DP=29;ExcessHet=3.0103;FS=9.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.42;ReadPosRankSum=0.207;SOR=0.043;VQSLOD=19.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:224,0,606
chr5	101816327	rs6866255	A	G	318.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.83;ReadPosRankSum=0.674;SOR=2.303;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:67:73,0,67
chr5	102310166	rs3733939	G	A	5667.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=65;ExcessHet=3.0103;FS=2.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=0.179;SOR=1.003;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:775,0,1034
chr5	102325878	rs12656131	A	G	601.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.66;ReadPosRankSum=-1.036e+00;SOR=1.828;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:108,0,64
chr5	102340782	rs3834262	GATTA	G	2234.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.880e-01;DB;DP=66;ExcessHet=3.9794;FS=1.334;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=1.05;SOR=0.542;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,21:66:99:746,0,2596
chr5	102342990	rs45518833	T	C	512.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.26;DB;DP=8;ExcessHet=3.9794;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=-3.450e-01;SOR=1.981;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:95:182,0,95
chr5	102345546	rs2230457	A	C	2324.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.015e+00;DB;DP=94;ExcessHet=3.9794;FS=1.192;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.50;ReadPosRankSum=-2.248e+00;SOR=0.580;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,48:94:99:1137,0,1287
chr5	102345722	rs3832357	A	AT	42.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.57;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=5.72;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:50:50,0,50
chr5	102355716	rs3215069	CT	C	646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=13;ExcessHet=3.9794;FS=4.260;MQ=60.00;MQRankSum=0.00;QD=16.17;ReadPosRankSum=-3.520e-01;SOR=2.566;VQSLOD=4.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,9:13:77:231,0,77
chr5	102355798	rs11951374	C	A	384.76	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.00;SOR=1.473;VQSLOD=23.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:36:72,0,36
chr5	102360747	rs17296280	A	C	441.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e-01;DB;DP=26;ExcessHet=3.9794;FS=2.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.23;ReadPosRankSum=0.750;SOR=0.382;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,8:26:99:105,0,534
chr5	102363858	rs26433	C	T	440.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.402e+00;DB;DP=33;ExcessHet=3.0103;FS=3.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-8.680e-01;SOR=0.283;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:449,0,454
chr5	102364542	rs2067133	A	AAT	5604.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=90;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=0.466;SOR=0.684;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:64,26:90:99:936,0,2782
chr5	102423576	rs468844	A	G	926.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=19;ExcessHet=3.9794;FS=3.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=0.402;SOR=1.532;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,10:19:99:0|1:102423576_A_G:451,0,496:102423576
chr5	102423579	rs469094	A	C	960.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.880e-01;DB;DP=22;ExcessHet=3.9794;FS=3.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.12;ReadPosRankSum=-1.000e-01;SOR=1.404;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,13:22:99:0|1:102423576_A_G:485,0,493:102423576
chr5	102432024	rs427430	G	A	109.58	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.65;ReadPosRankSum=0.00;SOR=2.494;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr5	102433409	rs34813	G	A	3477.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DB;DP=140;ExcessHet=3.9794;FS=3.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=-3.700e-01;SOR=0.518;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,64:140:99:1426,0,1826
chr5	102433610	rs55807386	G	A	177.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=1.96;SOR=0.892;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:79,0,32
chr5	102444053	rs34830	A	G	178.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=1.04;SOR=0.693;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:69:72,0,69
chr5	102444089	rs34831	C	T	314.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.07;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.17;ReadPosRankSum=-3.660e-01;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:46:179,0,46
chr5	102444595	rs34832	T	C	150.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.06;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:70:75,0,70
chr5	102456254	rs26523	C	T	942.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DB;DP=45;ExcessHet=3.9794;FS=1.592;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.97;ReadPosRankSum=1.42;SOR=0.546;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,17:45:99:335,0,665
chr5	102456304	rs26524	A	G	2581.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.560e-01;DB;DP=32;ExcessHet=3.0103;FS=3.807;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=0.740;SOR=1.256;VQSLOD=6.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,12:32:99:259,0,516
chr5	102488571	rs27896	T	C	966.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.518;DB;DP=36;ExcessHet=3.9794;FS=5.873;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.238;SOR=0.148;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:578,0,539
chr5	102489511	rs34767	T	G	922.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.660e+00;DB;DP=40;ExcessHet=3.9794;FS=0.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=1.80;SOR=0.490;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:463,0,529
chr5	102491502	rs34768	A	G	628.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.21;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=0.464;SOR=0.818;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:257,0,323
chr5	102494751	rs257292	A	G	1678.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=10;ExcessHet=3.9794;FS=6.768;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.09;ReadPosRankSum=1.44;SOR=2.701;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:185,0,124
chr5	102512447	rs152134	C	G	1027.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.26;DB;DP=18;ExcessHet=3.9794;FS=2.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.38;ReadPosRankSum=0.893;SOR=0.315;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:335,0,303
chr5	102512570	rs11408825	C	CA	8742.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.09;SOR=0.719;VQSLOD=4.55;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2540,207,0
chr5	102512853	rs201448688	CA	C	271.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.66;ReadPosRankSum=0.319;SOR=1.270;VQSLOD=6.06;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:65:0|1:102512853_CA_C:123,0,65:102512853
chr5	102512855	rs62362882	T	C	271.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.66;ReadPosRankSum=0.319;SOR=1.270;VQSLOD=21.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:65:0|1:102512853_CA_C:123,0,65:102512853
chr5	102518795	rs26822	A	G	260.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.05;ReadPosRankSum=1.83;SOR=0.569;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:111,0,30
chr5	102520400	rs26821	A	C	4721.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=57;ExcessHet=3.9794;FS=6.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=0.646;SOR=0.374;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,32:57:99:894,0,604
chr5	102537200	rs154290	T	G	1070.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.71;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.05;ReadPosRankSum=1.78;SOR=0.666;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:410,0,444
chr5	102537379	rs28025	A	G	603.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.05;ReadPosRankSum=1.94;SOR=0.671;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:147,0,466
chr5	102886512	rs58006145	T	C	868.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.72;SOR=3.014;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:885,75,0
chr5	102890560	rs11373550	G	GA	1362.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.960e-01;DB;DP=19;ExcessHet=3.9794;FS=7.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=0.721;SOR=0.519;VQSLOD=5.79;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,19:19:57:534,57,0
chr5	102891490	rs443022	G	A	781.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.10;SOR=6.184;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:115,9,0
chr5	102891695	rs10045774	A	G	4206.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=60;ExcessHet=3.9794;FS=1.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.94;ReadPosRankSum=0.770;SOR=0.669;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,59:60:99:1662,169,0
chr5	102894447	rs3734087	A	G	1152.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=15;ExcessHet=3.9794;FS=1.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=6.000e-03;SOR=0.489;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:573,45,0
chr5	103951746	rs72780785	C	A	764.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.03;DB;DP=37;ExcessHet=3.9794;FS=2.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.07;ReadPosRankSum=0.689;SOR=0.997;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,14:37:99:423,0,543
chr5	103978775	.	AGAAGGAAG	A	965.69	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=3.352;VQSLOD=6.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr5	103978969	rs33818	T	C	3023.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.87;SOR=1.346;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:78:760,78,0
chr5	103979119	rs161879	C	T	2343.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DB;DP=57;ExcessHet=6.9897;FS=0.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-4.010e-01;SOR=0.749;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,30:57:99:698,0,611
chr5	104043328	rs112532414	A	AAGG	1809.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.12;DB;DP=45;ExcessHet=3.9794;FS=2.815;MQ=60.00;MQRankSum=0.00;QD=18.65;ReadPosRankSum=-8.750e-01;SOR=1.038;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,19:45:99:643,0,1077
chr5	104077504	rs325578	C	A	217.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=1.71;SOR=0.495;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:73:101,0,73
chr5	104434310	rs144819878	A	AAG	526.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.24;ReadPosRankSum=-6.050e-01;SOR=1.609;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:64:64,0,369
chr5	104434335	.	AAAGG	A	208.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.25;ReadPosRankSum=2.32;SOR=0.919;VQSLOD=5.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:217,0,342
chr5	104434339	.	GGAAAGAAAGAAAGAAA	*,GGAAAGAAAGAAAGAAAGAAA	363.90	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-9.540e-01;DP=17;ExcessHet=1.5490;FS=6.293;MQ=60.00;MQRankSum=0.00;QD=22.74;ReadPosRankSum=1.28;SOR=2.833;VQSLOD=4.09;culprit=FS	GT:AD:DP:GQ:PL	1/2:0,8,8:17:99:723,336,305,387,0,364
chr5	104434344	.	GAA	G	244	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.898;DP=17;ExcessHet=3.9794;FS=2.551;MQ=60.00;MQRankSum=0.00;QD=14.35;ReadPosRankSum=0.589;SOR=1.296;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:17:99:363,0,306
chr5	104434347	.	A	G	241	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.57;DP=17;ExcessHet=3.9794;FS=2.551;MQ=60.00;MQRankSum=0.00;QD=14.18;ReadPosRankSum=2.59;SOR=1.296;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,8:17:99:363,0,305
chr5	107006446	rs35553	T	G	7248.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=34.60;SOR=4.441;VQSLOD=5.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:2190,171,0
chr5	107521677	rs286766	T	C	139.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=3.258;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:156,12,0
chr5	107560101	rs2044710	A	G	1098.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.892;DB;DP=16;ExcessHet=3.9794;FS=1.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=1.12;SOR=1.298;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:593,48,0
chr5	107683989	rs3756573	T	A	1597.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=-2.059e+00;SOR=2.107;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:1017,75,0
chr5	107684324	rs1862195	C	T	2725.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.66;DB;DP=25;ExcessHet=3.0103;FS=2.317;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.45;ReadPosRankSum=0.956;SOR=0.397;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:918,75,0
chr5	107684445	rs1862196	C	T	435.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.32;SOR=1.981;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:211,18,0
chr5	107703446	rs34546708	CAAG	C	1578.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.38;DB;DP=13;ExcessHet=3.9794;FS=15.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.29;ReadPosRankSum=0.783;SOR=2.833;VQSLOD=0.488;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,13:13:39:585,39,0
chr5	107703781	.	T	C	157.62	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=22.38;SOR=3.258;VQSLOD=18.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:174,12,0
chr5	108168451	rs376837075	C	CT	310.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.945;DB;DP=34;ExcessHet=6.9897;FS=3.829;MQ=59.98;MQRankSum=0.00;QD=2.82;ReadPosRankSum=0.075;SOR=0.307;VQSLOD=5.06;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,8:34:66:66,0,475
chr5	108171483	rs55954478	G	A	797.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.268;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.618;SOR=0.765;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,30:54:99:806,0,588
chr5	108203264	rs113463407	C	CCTT	272.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:94:120,0,94
chr5	108206968	rs7709144	C	T	1175.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.29;DB;DP=17;ExcessHet=6.9897;FS=4.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.37;ReadPosRankSum=0.538;SOR=0.201;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:313,0,261
chr5	108219323	rs67264931	AC	A	456.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.101;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.28;ReadPosRankSum=-4.310e-01;SOR=0.941;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:61:61,0,140
chr5	108386985	rs2416195	A	T	1556.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.222e+00;DB;DP=28;ExcessHet=1.5490;FS=5.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.80;ReadPosRankSum=0.674;SOR=2.219;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,16:28:99:481,0,344
chr5	108387229	rs113844089	AG	A	4774.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.520e-01;DB;DP=159;ExcessHet=3.9794;FS=0.840;MQ=59.11;MQRankSum=1.67;QD=14.60;ReadPosRankSum=-1.880e-01;SOR=0.750;VQSLOD=0.581;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:90,69:159:99:2297,0,3149
chr5	108516629	rs6594349	A	G	10394.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.36;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.25;ReadPosRankSum=1.34;SOR=0.684;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:4002,362,0
chr5	108516901	rs6594350	T	C	801.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.86;ReadPosRankSum=0.842;SOR=2.833;VQSLOD=20.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:300,21,0
chr5	108516944	rs6889791	C	T	123.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:66,0,78
chr5	108679870	rs10623655	T	TTTAA	3581.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.37;SOR=3.026;VQSLOD=5.35;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,12:12:39:585,39,0
chr5	108680647	rs441798	C	A	2029.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.07;DB;DP=38;ExcessHet=1.5490;FS=2.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.15;ReadPosRankSum=1.17;SOR=1.002;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1159,114,0
chr5	108680783	rs2161164	C	T	683.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.921e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=59.33;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.72;ReadPosRankSum=0.681;SOR=0.593;VQSLOD=0.819;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:572,51,0
chr5	108691738	rs2431253	A	T	3518.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.370e+00;DB;DP=54;ExcessHet=3.9794;FS=2.075;MQ=60.00;MQRankSum=0.00;QD=18.33;ReadPosRankSum=0.514;SOR=0.517;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1589,152,0
chr5	108713970	rs10042721	C	T	8770.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.160e-01;DB;DP=117;ExcessHet=3.0103;FS=3.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.35;ReadPosRankSum=1.11;SOR=0.943;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3541,350,0
chr5	108713982	rs12523186	T	C	4603.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.844e+00;DB;DP=121;ExcessHet=1.5490;FS=0.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.95;ReadPosRankSum=1.08;SOR=0.635;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3565,363,0
chr5	108714298	rs1045706	T	C	6233.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.676e+00;DB;DP=148;ExcessHet=1.5490;FS=1.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=-6.410e-01;SOR=0.876;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4571,443,0
chr5	108717157	rs2288531	T	C	499.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.037;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=1.40;SOR=0.836;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr5	108719151	rs1045704	G	A	3609.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.940e-01;DB;DP=78;ExcessHet=1.5490;FS=4.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=2.16;SOR=0.432;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2366,233,0
chr5	109033899	rs78048183	C	T	50.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.18;ReadPosRankSum=-1.981e+00;SOR=0.892;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,153
chr5	109049178	rs17162097	A	G	1841.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=30;ExcessHet=6.9897;FS=4.282;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=0.464;SOR=0.361;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:451,0,408
chr5	109051987	rs116355495	G	T	836.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.771e+00;DB;DP=96;ExcessHet=3.0103;FS=8.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.71;ReadPosRankSum=0.498;SOR=1.563;VQSLOD=19.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,38:96:99:845,0,1577
chr5	109090931	rs148653396	T	TA	330.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=0.493;SOR=0.551;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,11:24:99:339,0,413
chr5	109103002	rs6862458	G	C	230.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=2.303;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr5	109103566	rs17162179	G	C	162	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.967;SOR=0.941;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr5	109110537	rs6894260	T	A	3193.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=83;ExcessHet=6.9897;FS=3.627;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=0.516;SOR=0.932;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,44:83:99:977,0,866
chr5	109125072	rs2112212	C	G	1333.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.32;SOR=3.126;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:530,36,0
chr5	109125416	rs1019446	T	C	1531.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.09;SOR=5.784;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:513,39,0
chr5	109152873	rs10524185	ATATATGTATATG	A	1397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.951;DB;DP=11;ExcessHet=6.9897;FS=5.083;MQ=60.00;MQRankSum=0.00;QD=23.69;ReadPosRankSum=1.29;SOR=1.668;VQSLOD=5.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,8:11:99:327,0,160
chr5	109155208	rs6594401	A	G	263.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.88;SOR=1.863;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:142,15,0
chr5	109155640	rs113128185	A	G	292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.157;DB;DP=23;ExcessHet=3.0103;FS=1.935;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=0.092;SOR=0.320;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:301,0,368
chr5	109155787	rs7737286	G	A	572.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=5;ExcessHet=3.9794;FS=1.734;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.91;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:206,15,0
chr5	109156184	rs17489649	A	G	1399.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=32;ExcessHet=6.9897;FS=2.288;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=0.263;SOR=0.441;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,26:32:84:763,0,84
chr5	109159717	rs958235	G	A	269.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=4.174;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr5	109181682	rs3186988	A	T	11001.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.61;SOR=0.880;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2984,294,0
chr5	109190731	rs10071320	G	A	415.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.314e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.87;ReadPosRankSum=-2.540e+00;SOR=1.292;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr5	109202394	rs2217639	A	G	92.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:99,0,28
chr5	109219913	rs113932580	T	A	81.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.293e+00;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.42;ReadPosRankSum=0.361;SOR=0.527;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,3:15:90:0|1:109219913_T_A:90,0,845:109219913
chr5	109219920	rs113443220	CA	C	262.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.630e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.04;ReadPosRankSum=0.156;SOR=0.693;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:11,3:14:93:0|1:109219913_T_A:93,0,810:109219913
chr5	109220429	rs34826583	G	A	2444.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.289e+00;DB;DP=135;ExcessHet=3.9794;FS=0.462;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=1.90;SOR=0.657;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,58:135:99:1198,0,1995
chr5	109220640	rs34709715	A	G	1133.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286e+00;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.112;SOR=0.660;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:379,0,535
chr5	109220667	rs13167277	C	T	594.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.450e-01;DB;DP=18;ExcessHet=3.9794;FS=2.189;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.47;ReadPosRankSum=1.04;SOR=0.223;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:298,0,291
chr5	109220684	rs35925079	A	G	662.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DB;DP=13;ExcessHet=6.9897;FS=1.535;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.00;ReadPosRankSum=0.494;SOR=0.407;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:259,0,170
chr5	109940707	rs6897672	G	T	1174.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.188e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=0.490;SOR=0.693;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:160,0,233
chr5	109945941	.	A	AAGGAAGGGAGGAAGGGAGGAAGGGAGGAAGGGAGGAAGGG	123.03	PASS	AC=2;AF=1.00;AN=2;DP=3;ExcessHet=3.0103;FS=0.000;MQ=52.24;QD=37.69;SOR=1.179;VQSLOD=3.18;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr5	109946411	rs4277958	G	A	173.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349e+00;DB;DP=11;ExcessHet=3.0103;FS=3.424;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=1.06;SOR=2.179;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:182,0,173
chr5	109953869	rs6882222	T	C	805.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=8;ExcessHet=3.9794;FS=4.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=0.189;SOR=0.211;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:93:158,0,93
chr5	109960960	rs72771461	T	C	469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.400e-02;DB;DP=50;ExcessHet=3.0103;FS=6.608;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.39;ReadPosRankSum=-1.000e-02;SOR=1.881;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,19:50:99:478,0,830
chr5	109960989	rs61730920	A	G	3934.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.600e-01;DB;DP=58;ExcessHet=3.9794;FS=5.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.29;ReadPosRankSum=-1.127e+00;SOR=1.120;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,26:58:99:589,0,784
chr5	109973902	rs1422495	T	G	422.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.940e-01;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=1.33;SOR=0.897;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,20:43:99:431,0,582
chr5	110079450	rs17446534	T	C	1781.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=55;ExcessHet=3.9794;FS=1.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=1.01;SOR=0.836;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,21:55:99:461,0,949
chr5	110284825	rs73222499	A	G	1246.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.020e-01;DB;DP=25;ExcessHet=6.9897;FS=8.822;MQ=58.69;MQRankSum=-1.467e+00;NEGATIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=0.957;SOR=1.476;VQSLOD=-1.787e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,8:25:99:192,0,498
chr5	110284853	rs74316730	T	C	1451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.310e+00;DB;DP=27;ExcessHet=6.9897;FS=8.020;MQ=58.68;MQRankSum=-1.657e+00;NEGATIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=-3.880e-01;SOR=1.483;VQSLOD=-1.630e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,7:27:99:0|1:110284853_T_C:234,0,1103:110284853
chr5	110284855	rs79251941	A	G	1451.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.076e+00;DB;DP=27;ExcessHet=6.9897;FS=8.259;MQ=58.64;MQRankSum=-1.657e+00;NEGATIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-5.530e-01;SOR=1.501;VQSLOD=-1.641e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,7:27:99:0|1:110284853_T_C:234,0,1103:110284853
chr5	110284867	rs75222151	T	C	691.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.790e-01;DB;DP=24;ExcessHet=6.9897;FS=15.782;MQ=58.39;MQRankSum=-1.847e+00;NEGATIVE_TRAIN_SITE;QD=7.13;ReadPosRankSum=-7.110e-01;SOR=2.165;VQSLOD=-3.126e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,5:24:88:88,0,568
chr5	110407507	rs2289276	C	T	2269.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.864;DB;DP=92;ExcessHet=3.9794;FS=1.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.75;ReadPosRankSum=0.500;SOR=0.553;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,46:92:99:1284,0,1279
chr5	110408705	rs11466741	C	T	530.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=22;ExcessHet=3.9794;FS=1.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.82;ReadPosRankSum=1.73;SOR=0.486;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:124,0,387
chr5	110409067	rs2289277	C	G	1315.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.440e+00;DB;DP=14;ExcessHet=3.9794;FS=10.579;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=1.00;SOR=0.049;VQSLOD=18.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:198,0,250
chr5	110430488	rs17623144	C	G	107.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.88;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:88:116,0,88
chr5	110433086	rs13185610	A	G	481.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.855e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.914;SOR=0.631;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:135,0,268
chr5	110433098	rs1993465	A	G	1217.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.00;ReadPosRankSum=0.920;SOR=2.093;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:170,0,213
chr5	110434307	rs13153937	G	A	890.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.357e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=0.00;SOR=0.976;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:323,0,247
chr5	110436450	rs10038177	C	T	1838.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=21;ExcessHet=3.9794;FS=3.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.16;ReadPosRankSum=0.507;SOR=1.296;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,13:21:99:348,0,210
chr5	110438000	rs35339070	C	CA	553.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.836;DB;DP=27;ExcessHet=3.9794;FS=0.890;MQ=60.00;MQRankSum=0.00;QD=9.88;ReadPosRankSum=0.449;SOR=0.864;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,13:27:99:265,0,267
chr5	110439509	rs11241095	A	G	1463.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.37;SOR=0.659;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,35:60:99:822,0,475
chr5	110443228	rs10043631	C	T	927.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.320e-01;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=0.255;SOR=0.708;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:125,0,350
chr5	110446091	rs34962120	G	A	789.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740e+00;DB;DP=25;ExcessHet=3.9794;FS=2.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.175;SOR=1.739;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,8:25:99:242,0,652
chr5	110446741	rs13161853	C	A	2010.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175e+00;DB;DP=23;ExcessHet=3.9794;FS=3.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.85;ReadPosRankSum=1.01;SOR=0.326;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:256,0,465
chr5	110448753	rs59359951	T	A	334.18	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.66;ReadPosRankSum=1.76;SOR=1.739;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,10:11:5:295,5,0
chr5	110454681	rs17553936	A	G	1333.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.838;DB;DP=37;ExcessHet=3.9794;FS=2.739;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=1.90;SOR=0.444;VQSLOD=6.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:433,0,603
chr5	110456704	rs13186912	A	T	1087.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.87;DB;DP=43;ExcessHet=3.9794;FS=2.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.64;ReadPosRankSum=0.352;SOR=1.007;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,16:43:99:354,0,764
chr5	110679557	rs34578342	TAA	T	655.99	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.52;ReadPosRankSum=-7.510e-01;SOR=3.352;VQSLOD=5.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr5	110679657	rs446176	C	G	2700.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.12;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=1.29;SOR=0.596;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:573,60,0
chr5	110679873	rs387238	G	A	1673.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=23;ExcessHet=1.5490;FS=0.000;MQ=59.80;MQRankSum=1.27;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=0.485;SOR=0.607;VQSLOD=1.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,23:23:68:735,68,0
chr5	110710360	rs306067	G	C	1068.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.670e-01;DB;DP=10;ExcessHet=3.0103;FS=2.667;MQ=59.77;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.69;ReadPosRankSum=-2.530e-01;SOR=1.802;VQSLOD=5.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:379,30,0
chr5	110710699	rs5870446	A	AG	6134.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.43;DB;DP=72;ExcessHet=3.0103;FS=0.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.56;ReadPosRankSum=-3.140e-01;SOR=0.630;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2440,222,0
chr5	110712491	rs306129	A	G	2725.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.21;DB;DP=23;ExcessHet=3.0103;FS=2.313;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.07;ReadPosRankSum=0.114;SOR=0.334;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:873,69,0
chr5	110730557	rs523389	C	T	2353.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.367e+00;DB;DP=21;ExcessHet=3.0103;FS=4.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.18;ReadPosRankSum=-2.470e-01;SOR=1.871;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:772,63,0
chr5	110782274	rs3797739	C	A	1021.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.33;ReadPosRankSum=-1.690e-01;SOR=1.259;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:136,0,204
chr5	110782634	rs34007984	T	G	372.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730e+00;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.90;ReadPosRankSum=-6.860e-01;SOR=0.693;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:381,0,162
chr5	110784822	rs2116824	A	G	4881.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.990e-01;DB;DP=67;ExcessHet=3.9794;FS=5.205;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.15;ReadPosRankSum=0.351;SOR=1.030;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,31:67:99:709,0,906
chr5	110818421	rs3733995	C	T	353.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=8;ExcessHet=3.9794;FS=2.884;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.77;ReadPosRankSum=-2.310e-01;SOR=0.204;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:19:227,0,19
chr5	110819621	rs25924	G	A	384.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=0.00;SOR=2.670;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:63,0,61
chr5	110819753	rs25925	G	C	2828.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.94;ReadPosRankSum=-6.770e-01;SOR=0.605;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:669,0,400
chr5	111013695	rs10478063	G	T	513.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.785e+00;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-1.433e+00;SOR=0.734;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:522,0,507
chr5	111013858	rs26042	G	A	4588.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.620e-01;DB;DP=31;ExcessHet=3.0103;FS=2.444;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.04;ReadPosRankSum=1.58;SOR=1.174;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,15:31:99:384,0,434
chr5	111070298	rs3756605	T	G	702.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.96;ReadPosRankSum=1.11;SOR=0.557;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:94:197,0,94
chr5	111071106	rs3797722	T	A	1437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.84;ReadPosRankSum=-1.110e-01;SOR=0.368;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:259,0,239
chr5	111091630	rs144568737	TTAAGA	T	754.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.570;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.18;ReadPosRankSum=0.035;SOR=0.904;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,20:34:99:763,0,915
chr5	111479750	rs62372418	T	C	3922.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=1.971;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1169,96,0
chr5	111497358	rs3816657	T	G	7854.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.50;DB;DP=184;ExcessHet=1.5490;FS=8.594;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.10;ReadPosRankSum=-7.300e-01;SOR=0.366;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,184:184:99:5521,552,0
chr5	111500822	.	T	TAAA	8278.73	PASS	AC=2;AF=1.00;AN=2;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=1.546;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,59:59:99:1|1:111500822_T_TAAA:2627,177,0:111500822
chr5	111500824	rs33929905	T	TAC	8278.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.44;SOR=1.596;VQSLOD=5.50;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,57:57:99:1|1:111500822_T_TAAA:2627,177,0:111500822
chr5	111504479	rs7703522	C	T	9328.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.89;SOR=0.927;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2664,270,0
chr5	111505885	rs1560052	T	G	6499.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.90;SOR=3.298;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1512,123,0
chr5	111506069	rs10040749	G	A	15861.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=154;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.44;SOR=0.984;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,154:154:99:4425,458,0
chr5	111519740	rs1560058	T	C	6095.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.15;DB;DP=91;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=1.23;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.700;SOR=0.662;VQSLOD=2.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3011,273,0
chr5	111519904	rs59653731	C	T	860.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.750e-01;DB;DP=66;ExcessHet=3.0103;FS=2.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=-2.960e-01;SOR=1.127;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:869,0,963
chr5	111530284	rs7719346	A	G	6289.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=0.715;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1681,152,0
chr5	111531387	rs149373122	A	T	724.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.190e-01;DB;DP=64;ExcessHet=3.0103;FS=0.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.994;SOR=0.483;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:733,0,758
chr5	111540950	rs12658467	C	T	1600.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DB;DP=34;ExcessHet=6.9897;FS=3.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-4.280e-01;SOR=1.071;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:595,0,479
chr5	111540968	rs373807306	T	TC	3653.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=38;ExcessHet=3.9794;FS=7.544;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=1.13;SOR=1.394;VQSLOD=5.91;culprit=FS	GT:AD:DP:GQ:PL	0/1:20,18:38:99:473,0,539
chr5	111545670	rs890757	C	G	9337.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.106e+00;DB;DP=117;ExcessHet=3.0103;FS=1.339;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.94;ReadPosRankSum=-4.350e-01;SOR=0.785;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3618,350,0
chr5	111545957	rs890758	T	A	452.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=-1.036e+00;SOR=2.584;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:158,12,0
chr5	111600400	rs4457123	C	G	333.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.53;ReadPosRankSum=-1.080e-01;SOR=0.602;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:108,0,225
chr5	111611076	rs12521830	A	G	835.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=30;ExcessHet=3.9794;FS=0.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.826;SOR=0.546;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,12:30:99:259,0,487
chr5	111615926	rs78003722	G	A	1215.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.107;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-1.249e+00;SOR=0.646;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,50:89:99:1224,0,900
chr5	112043282	rs79896135	C	G	4138.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.26;DB;DP=48;ExcessHet=3.9794;FS=11.467;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=0.901;SOR=1.545;VQSLOD=17.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:726,0,764
chr5	112043384	rs78429131	T	G	3911.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=190;ExcessHet=3.9794;FS=1.281;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.21;ReadPosRankSum=0.632;SOR=0.766;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,90:190:99:2180,0,2442
chr5	112116632	rs2909961	C	T	868.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.704;DB;DP=44;ExcessHet=3.9794;FS=0.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.73;ReadPosRankSum=-6.420e-01;SOR=0.833;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:313,0,685
chr5	112116773	rs2289484	A	G	197.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.92;ReadPosRankSum=0.674;SOR=0.859;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:107,0,29
chr5	112119462	.	CA	C	487.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DP=19;ExcessHet=6.9897;FS=4.136;MQ=59.77;MQRankSum=0.00;QD=13.54;ReadPosRankSum=1.45;SOR=1.765;VQSLOD=5.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:19:99:143,0,103
chr5	112119593	rs111933129	A	G	698.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.038e+00;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-9.980e-01;SOR=0.665;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:707,0,623
chr5	112162854	rs2229992	T	C	3760.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.900e-01;DB;DP=100;ExcessHet=1.5490;FS=0.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=-4.380e-01;SOR=0.645;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:7,93:100:99:2526,109,0
chr5	112164561	rs351771	G	A	5491.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.393;DB;DP=81;ExcessHet=3.0103;FS=2.320;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=-1.108e+00;SOR=0.518;VQSLOD=6.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,80:81:99:2196,213,0
chr5	112164862	rs351772	G	A	107.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.29;SOR=2.833;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr5	112173106	rs3839284	T	TAGAA	282.04	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.792;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=0.652;SOR=1.609;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr5	112175770	rs41115	G	A	5467.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.590e-01;DB;DP=98;ExcessHet=3.9794;FS=0.910;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-1.173e+00;SOR=0.620;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:7,91:98:71:2599,71,0
chr5	112176325	rs42427	G	A	3678.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=59;ExcessHet=3.9794;FS=1.206;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.10;ReadPosRankSum=-5.790e-01;SOR=0.772;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1956,177,0
chr5	112176559	rs866006	T	G	3483.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.699e+00;DB;DP=64;ExcessHet=3.9794;FS=7.261;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-1.060e-01;SOR=0.616;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1917,191,0
chr5	112176756	rs459552	T	A	10820.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.40;SOR=1.296;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3189,297,0
chr5	112177171	rs465899	G	A	2353.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.98;DB;DP=45;ExcessHet=3.9794;FS=1.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.58;ReadPosRankSum=0.596;SOR=0.576;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1388,135,0
chr5	112196949	rs460137	A	C	518.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.877e+00;DB;DP=37;ExcessHet=3.0103;FS=6.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.552;SOR=0.132;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:527,0,474
chr5	112197986	rs431287	A	T	1653.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=14;ExcessHet=3.0103;FS=4.830;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=1.49;SOR=0.165;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,13:14:32:417,32,0
chr5	112198015	rs372492	A	G	2399.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.79;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=1.50;SOR=0.671;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:924,78,0
chr5	112198071	rs112093457	AAGG	A	7614.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.078;DB;DP=64;ExcessHet=3.0103;FS=2.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.54;ReadPosRankSum=-1.563e+00;SOR=0.459;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2851,193,0
chr5	112200098	rs351767	A	G	1754.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.69;DB;DP=24;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.74;ReadPosRankSum=-1.432e+00;SOR=0.414;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:1028,72,0
chr5	112200425	rs141132771	A	G	654.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.660e+00;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=13.35;ReadPosRankSum=1.24;SOR=0.573;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,27:49:99:663,0,579
chr5	112217636	rs111457700	GT	G	1261.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DB;DP=13;ExcessHet=3.0103;FS=6.715;MQ=60.00;MQRankSum=0.00;QD=31.55;ReadPosRankSum=0.592;SOR=2.712;VQSLOD=4.27;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,4:13:99:0|1:112217636_GT_G:138,0,486:112217636
chr5	112217639	.	T	G	491.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.55;SOR=0.922;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,4:14:99:0|1:112217636_GT_G:138,0,486:112217636
chr5	112217829	rs12152991	C	G	738.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.70;DB;DP=21;ExcessHet=3.9794;FS=2.137;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=1.12;SOR=0.407;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:202,0,374
chr5	112217964	rs67293732	G	C	839.81	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.00;ReadPosRankSum=1.11;SOR=3.912;VQSLOD=15.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:158,0,67
chr5	112228791	.	TAAAAAAA	T,TAAAAAA	900.11	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.55;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.96;MQRankSum=0.00;QD=34.62;ReadPosRankSum=1.31;SOR=1.347;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,9,4:16:40:395,40,214,332,0,350
chr5	112237914	rs141436136	TG	T	159.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=5.67;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:38:65,0,38
chr5	112237915	rs33397	G	*,T	93.69	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=10.41;SOR=5.421;VQSLOD=11.12;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,3,2:5:38:180,53,38,79,0,65
chr5	112238300	rs5870516	GA	G	356.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.915e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.375;SOR=0.446;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,2:9:54:54,0,256
chr5	112256814	rs149190	A	G	7330.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=86;ExcessHet=3.0103;FS=0.623;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.56;ReadPosRankSum=-8.220e-01;SOR=0.816;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1237,0,1193
chr5	112257242	rs33570	G	C	735.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=23.08;SOR=0.990;VQSLOD=16.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:229,21,0
chr5	112257366	rs153557	A	G	611.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.53;ReadPosRankSum=0.366;SOR=0.859;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:28:28,0,121
chr5	112257591	rs151980	C	G	972.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=13;ExcessHet=3.0103;FS=6.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.60;ReadPosRankSum=0.148;SOR=2.215;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:105,0,258
chr5	112257908	rs153556	T	C	21938.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.790e-01;DB;DP=265;ExcessHet=3.0103;FS=2.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=1.69;SOR=0.463;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,135:265:99:3216,0,3234
chr5	112312528	rs33556	T	C	6721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=223;ExcessHet=3.9794;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.70;ReadPosRankSum=-2.500e-01;SOR=0.582;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,128:223:99:3562,0,2484
chr5	112312676	rs33555	T	C	33564.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=345;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=1.175;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,345:345:99:10777,1034,0
chr5	112312736	rs33554	G	C	12810.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.774e+00;DB;DP=191;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.60;ReadPosRankSum=-4.750e-01;SOR=0.723;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,113:191:99:2916,0,1864
chr5	112321488	rs33543	A	G	2071.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=56;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.59;ReadPosRankSum=0.444;SOR=0.655;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,30:56:99:875,0,709
chr5	112328102	.	T	C	75.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.54;ReadPosRankSum=0.189;SOR=0.693;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:68:84,0,68
chr5	112328377	rs3733969	A	G	3446.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=51;ExcessHet=3.9794;FS=0.611;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=0.494;SOR=0.614;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,26:51:99:570,0,587
chr5	112343544	rs2052484	G	A	1002.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192e+00;DB;DP=13;ExcessHet=3.9794;FS=1.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=1.20;SOR=1.445;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:144,0,226
chr5	112343878	rs115903638	T	C	210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=15;ExcessHet=3.0103;FS=3.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=0.980;SOR=2.066;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:219,0,265
chr5	112349070	rs9326869	T	C	3835.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=69;ExcessHet=3.9794;FS=2.490;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=1.73;SOR=0.821;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,27:69:99:639,0,1001
chr5	112364945	rs1363333	A	G	243.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=-4.310e-01;SOR=0.495;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,70
chr5	112379083	rs4627978	A	G	4491.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=61;ExcessHet=3.0103;FS=3.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.882;SOR=1.021;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1922,182,0
chr5	112379095	rs4277906	T	C	5031.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.631;DB;DP=65;ExcessHet=3.0103;FS=0.645;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.55;ReadPosRankSum=0.993;SOR=0.826;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2088,194,0
chr5	112379289	rs2227948	G	A	3941.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.15;DB;DP=153;ExcessHet=3.9794;FS=4.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=1.47;SOR=0.926;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,76:153:99:2113,0,1846
chr5	112379434	rs4705755	T	A	568.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=47;ExcessHet=3.0103;FS=1.646;MQ=60.00;MQRankSum=0.00;QD=12.09;ReadPosRankSum=-2.429e+00;SOR=1.179;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:577,0,840
chr5	112384725	rs113825892	GGTCACTGGGCA	G	3668.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=62;ExcessHet=1.5490;FS=8.326;MQ=60.00;MQRankSum=0.00;QD=28.89;ReadPosRankSum=0.560;SOR=1.495;VQSLOD=4.16;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,27:62:99:1029,0,1367
chr5	112384802	rs6594664	G	A	9469.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.568e+00;DB;DP=106;ExcessHet=3.0103;FS=0.453;MQ=59.97;MQRankSum=0.994;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=1.18;SOR=0.744;VQSLOD=2.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3180,316,0
chr5	112385004	rs7726296	C	G	2038.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.173;DB;DP=69;ExcessHet=3.9794;FS=4.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=0.344;SOR=1.092;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,34:69:99:0|1:112385004_C_G:1308,0,1640:112385004
chr5	112385005	rs7726162	A	C	2038.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=68;ExcessHet=3.9794;FS=4.329;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.405;SOR=1.123;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:35,33:68:99:0|1:112385004_C_G:1308,0,1640:112385004
chr5	112385035	rs7708603	T	G	2503.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=54;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=0.460;SOR=0.636;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:684,0,723
chr5	112389221	rs11302774	GA	G	1373.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.37;SOR=5.943;VQSLOD=6.55;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,12:12:36:426,36,0
chr5	112389293	rs4295378	T	C	3436.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.85;SOR=7.546;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1257,96,0
chr5	112389747	rs4705536	C	G	2313.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.417e+00;DB;DP=22;ExcessHet=3.0103;FS=1.232;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=2.19;SOR=0.473;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:754,66,0
chr5	112399791	rs2227947	G	A	3930.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=1.038;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3947,396,0
chr5	112400040	rs4705538	C	A	1869.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.40;SOR=5.376;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:556,39,0
chr5	112406718	rs4705771	A	G	8379.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.31;SOR=1.038;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2128,201,0
chr5	112439759	rs13173830	T	G	234.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=3.912;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:251,18,0
chr5	112439941	rs6594681	T	C	4847.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.53;SOR=1.012;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1415,135,0
chr5	112479004	rs2227949	T	C	11584.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.330;DB;DP=142;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.79;ReadPosRankSum=1.20;SOR=0.702;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4379,424,0
chr5	112487137	rs1947026	A	C	3994.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.808e+00;DB;DP=43;ExcessHet=3.0103;FS=1.904;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=-2.000e-01;SOR=0.493;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1304,129,0
chr5	112487287	rs2165930	G	C	306.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.61;ReadPosRankSum=0.589;SOR=1.179;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:175,12,0
chr5	112487302	rs2165931	A	G	571.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.08;ReadPosRankSum=0.623;SOR=2.419;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:138,12,0
chr5	112720648	rs17327526	C	A	2437.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.340e+00;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=0.673;SOR=0.625;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1606,159,0
chr5	112823998	rs348943	C	T	13084.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.625;DB;DP=258;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.32;ReadPosRankSum=0.193;SOR=0.711;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,258:258:99:7292,763,0
chr5	112824039	rs348942	T	C	11600.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=229;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=0.884;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,229:229:99:6483,687,0
chr5	112824048	rs35336557	T	TGCC	8643.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.443;DB;DP=147;ExcessHet=1.5490;FS=1.272;MQ=60.00;MQRankSum=0.00;QD=34.17;ReadPosRankSum=0.398;SOR=0.572;VQSLOD=5.65;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,147:147:99:6463,445,0
chr5	112824166	rs348941	G	C	3292.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=22.35;SOR=5.084;VQSLOD=18.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1969,141,0
chr5	112868500	rs144197941	T	A	273.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=-1.615e+00;SOR=0.818;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:282,0,230
chr5	112876889	rs373624814	AT	A	917.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.136;DB;DP=49;ExcessHet=6.9897;FS=9.073;MQ=59.94;MQRankSum=0.00;QD=5.77;ReadPosRankSum=0.205;SOR=0.244;VQSLOD=3.12;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,13:49:99:165,0,616
chr5	112888854	rs34053583	CT	C	314.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.590e-01;DB;DP=9;ExcessHet=3.9794;FS=1.235;MQ=59.72;MQRankSum=0.00;QD=14.29;ReadPosRankSum=0.00;SOR=1.048;VQSLOD=6.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:9:37:136,0,37
chr5	112888875	rs72805421	C	A	180.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.033;DB;DP=25;ExcessHet=3.9794;FS=3.078;MQ=59.70;MQRankSum=0.00;QD=4.30;ReadPosRankSum=0.625;SOR=1.362;VQSLOD=3.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:19,6:25:99:120,0,605
chr5	113698544	rs40179	G	C	4572.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.770e-01;DB;DP=397;ExcessHet=3.0103;FS=0.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=-9.700e-01;SOR=0.720;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:213,184:397:99:4581,0,5404
chr5	113698631	rs111266015	T	TGCC	4249.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.492;DB;DP=225;ExcessHet=3.0103;FS=1.624;MQ=60.00;MQRankSum=0.00;QD=18.89;ReadPosRankSum=0.162;SOR=0.833;VQSLOD=6.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:115,110:225:99:4258,0,4637
chr5	113822205	rs12719181	C	T	1207.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=22;ExcessHet=1.5490;FS=3.009;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=0.803;SOR=1.302;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:277,0,304
chr5	113829121	rs1841251	A	G	9210.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.11;SOR=1.352;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2993,261,0
chr5	114462355	rs2974617	C	T	10188.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.570e-01;DB;DP=132;ExcessHet=3.0103;FS=3.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=-1.800e-02;SOR=0.995;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4175,396,0
chr5	114462589	rs2921623	A	C	2393.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.93;DB;DP=21;ExcessHet=3.0103;FS=2.641;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.20;ReadPosRankSum=0.319;SOR=0.392;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:767,63,0
chr5	114462630	rs2974528	T	C	1014.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=13;ExcessHet=6.9897;FS=1.931;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.30;ReadPosRankSum=-5.970e-01;SOR=0.399;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:187,0,210
chr5	114469977	rs2974618	A	G	253.77	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.72;ReadPosRankSum=1.15;SOR=2.833;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:108,0,29
chr5	114557727	rs265428	C	T	1228.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=1.39;SOR=0.651;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,17:51:99:377,0,854
chr5	114573873	rs7706217	A	T	340.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.40;SOR=4.615;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:159,12,0
chr5	114588633	rs17137580	A	G	110.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.05;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:63:119,0,63
chr5	114598204	rs267307	C	T	3875.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.49;SOR=9.044;VQSLOD=24.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1143,81,0
chr5	114605323	rs76812913	A	T	865.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.296;DB;DP=34;ExcessHet=3.9794;FS=2.195;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=2.45;SOR=1.092;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,19:34:99:421,0,351
chr5	114611356	rs267295	A	C	2117.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.30;SOR=6.358;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:750,51,0
chr5	115167595	rs3215095	CT	C	7176.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-02;DB;DP=89;ExcessHet=3.0103;FS=2.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.39;ReadPosRankSum=1.41;SOR=0.522;VQSLOD=7.07;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:46,43:89:99:1214,0,1287
chr5	115173678	rs26532	C	A	3670.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.13;ReadPosRankSum=0.054;SOR=0.658;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,13:25:99:392,0,339
chr5	115194053	rs181080131	G	C	751.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.882e+00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-1.577e+00;SOR=0.662;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,25:42:99:760,0,553
chr5	115298232	rs9326980	G	C	12731.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.04;SOR=0.794;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3862,351,0
chr5	115298311	rs201363777	T	C	1816.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.850e-01;DB;DP=122;ExcessHet=3.0103;FS=0.676;MQ=60.00;MQRankSum=0.00;QD=14.89;ReadPosRankSum=0.928;SOR=0.783;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,68:122:99:1825,0,1426
chr5	115298378	rs10062297	C	T	12537.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=124;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=0.704;VQSLOD=20.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3937,369,0
chr5	115298475	rs12520255	T	C	26327.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.900e-02;DB;DP=274;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.84;ReadPosRankSum=1.61;SOR=0.652;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,274:274:99:8891,822,0
chr5	115298518	rs12522632	A	G	32182.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=366;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=30.48;SOR=1.322;VQSLOD=4.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,366:366:99:10916,1096,0
chr5	115298977	rs1445708	C	T	2694.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415e+00;DB;DP=85;ExcessHet=3.9794;FS=0.613;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=0.437;SOR=0.753;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,36:85:99:970,0,1498
chr5	115323691	rs35321827	G	A	1191.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.599;SOR=0.663;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,23:55:99:646,0,826
chr5	115323806	rs7736859	T	C	996.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.68;SOR=6.358;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:305,21,0
chr5	115336862	rs7712021	T	C	3162.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.070;DB;DP=60;ExcessHet=1.5490;FS=1.676;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=0.089;SOR=0.894;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,30:60:99:705,0,676
chr5	115338704	rs1346479	T	C	320.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.00;SOR=1.347;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:70:154,0,70
chr5	115338732	rs1560080	G	A	527.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.190e-01;DB;DP=6;ExcessHet=3.0103;FS=2.483;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.99;ReadPosRankSum=0.00;SOR=1.863;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:205,18,0
chr5	115339086	rs6594929	A	G	1493.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=16;ExcessHet=3.0103;FS=1.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.29;ReadPosRankSum=0.677;SOR=0.423;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:565,48,0
chr5	115341611	rs10078748	G	T	8248.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=0.972;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,70:70:99:2201,210,0
chr5	115341638	rs10078759	G	C	7684.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.75;SOR=1.241;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1985,207,0
chr5	115348341	rs7726801	A	G	541.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=0.00;SOR=2.093;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:71,0,32
chr5	115351150	rs10214076	T	G	2101.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.460e-01;DB;DP=37;ExcessHet=3.9794;FS=0.798;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=-6.660e-01;SOR=0.606;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,12:37:99:346,0,791
chr5	115351498	rs17485148	C	T	5042.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DB;DP=82;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=1.77;SOR=0.687;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,39:82:99:1029,0,1011
chr5	115357676	rs1508876	T	A	283.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.503;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=-9.850e-01;SOR=0.446;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:292,0,265
chr5	115358282	rs13182375	A	G	1090.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=10;ExcessHet=3.0103;FS=7.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.08;ReadPosRankSum=2.40;SOR=4.548;VQSLOD=12.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:401,30,0
chr5	115387421	rs1541801	A	G	1838.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.48;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.65;ReadPosRankSum=-6.490e-01;SOR=0.715;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:643,45,0
chr5	115389626	rs954763	A	C	794.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.52;SOR=3.912;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:404,36,0
chr5	115389946	rs2662472	A	C	560.31	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.02;ReadPosRankSum=-8.700e-02;SOR=1.721;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
chr5	115394317	rs6880244	G	C	1026.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.073;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.94;ReadPosRankSum=0.105;SOR=2.448;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:333,24,0
chr5	115394357	rs6860908	T	C	2492.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.31;SOR=4.743;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:541,48,0
chr5	115394396	rs6880121	C	G	3454.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=23;ExcessHet=3.0103;FS=5.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.57;ReadPosRankSum=1.30;SOR=1.734;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:861,69,0
chr5	115394626	rs6880759	G	A	10081.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=1.022;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2864,290,0
chr5	115394759	.	C	T	377.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.950e-01;DP=25;ExcessHet=3.0103;FS=2.054;MQ=60.00;MQRankSum=0.00;QD=15.09;ReadPosRankSum=-4.930e-01;SOR=1.550;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:386,0,298
chr5	115394794	rs6881110	G	A	1767.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.158e+00;DB;DP=11;ExcessHet=3.0103;FS=2.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.57;ReadPosRankSum=-3.900e-01;SOR=1.680;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:115394794_G_A:495,33,0:115394794
chr5	115394795	rs6880801	C	T	1767.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.636e+00;DB;DP=11;ExcessHet=3.0103;FS=2.202;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.57;ReadPosRankSum=-3.510e-01;SOR=1.680;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,11:11:33:1|1:115394794_G_A:495,33,0:115394794
chr5	115394859	rs6880695	A	G	1057.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=6.439;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:115394859_A_G:270,18,0:115394859
chr5	115394869	rs6861823	T	C	976.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.37;SOR=6.184;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:115394859_A_G:270,18,0:115394859
chr5	115420547	rs1133187	T	C	840.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.51;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.03;ReadPosRankSum=0.555;SOR=2.468;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:242,18,0
chr5	115423030	rs4920904	A	C	531.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.992;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.24;ReadPosRankSum=-6.190e-01;SOR=3.258;VQSLOD=19.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:326,24,0
chr5	115426746	rs10065554	T	C	1558.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.502e+00;DB;DP=41;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.820;SOR=0.618;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1219,123,0
chr5	115427056	rs9326986	A	C	77.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.13;SOR=2.303;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	115428334	rs1129494	G	T	4253.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.25;DB;DP=96;ExcessHet=1.5490;FS=2.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=-1.642e+00;SOR=0.510;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:2875,288,0
chr5	115428439	rs6894046	T	A	2367.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.96;DB;DP=46;ExcessHet=1.5490;FS=2.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.99;ReadPosRankSum=0.712;SOR=0.984;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1670,138,0
chr5	115469773	rs1129496	C	T	3443.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=88;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.82;ReadPosRankSum=-6.340e-01;SOR=0.670;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2545,264,0
chr5	115628253	rs183617980	G	T	763.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DB;DP=75;ExcessHet=3.0103;FS=4.700;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.268;SOR=1.334;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,32:75:99:772,0,1022
chr5	115808551	rs200871722	TA	T	342.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.83;ReadPosRankSum=0.608;SOR=1.284;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:69:69,0,117
chr5	115811220	rs423834	T	C	2863.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.405e+00;DB;DP=69;ExcessHet=6.9897;FS=2.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.19;ReadPosRankSum=-5.380e-01;SOR=0.550;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,33:69:99:811,0,877
chr5	115813726	rs34966	A	G	7535.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.40;ReadPosRankSum=1.65;SOR=0.236;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,63:64:99:2051,182,0
chr5	115814496	rs40102	C	G	297.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.036;DB;DP=21;ExcessHet=3.0103;FS=6.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=-1.209e+00;SOR=2.833;VQSLOD=17.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:306,0,371
chr5	115815684	rs27495	C	G	1551.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.92;ReadPosRankSum=0.619;SOR=5.084;VQSLOD=19.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:55:240,0,55
chr5	115827120	.	A	AT	40.68	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.34;SOR=2.303;VQSLOD=4.23;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:53,6,0
chr5	115827356	rs154599	C	T	2852.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=45;ExcessHet=3.9794;FS=1.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.52;ReadPosRankSum=-3.200e-01;SOR=0.533;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1463,135,0
chr5	115827407	rs154600	G	A	5822.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.851e+00;DB;DP=75;ExcessHet=3.0103;FS=3.367;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.360;SOR=0.463;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2290,224,0
chr5	115831092	rs32972	C	T	765.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=1.06;SOR=0.705;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,33:81:99:774,0,1188
chr5	115831305	rs32973	G	A	1091.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.418;SOR=1.201;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:406,33,0
chr5	115831330	rs2287686	A	G	53.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=0.431;SOR=0.307;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,145
chr5	115837772	rs154466	G	A	4445.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.58;SOR=3.315;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1208,96,0
chr5	115838117	rs54100	C	G	4558.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.52;SOR=1.458;VQSLOD=4.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1415,129,0
chr5	115838238	rs54099	T	A	1323.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=3.086;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr5	115840278	rs154575	C	A	149.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.43;SOR=3.258;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr5	117329051	rs5870786	T	TAGACAC	2915.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.900e-02;DB;DP=21;ExcessHet=3.0103;FS=1.192;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.22;ReadPosRankSum=-1.940e-01;SOR=0.521;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,21:21:63:839,63,0
chr5	117774596	rs115568993	T	C	551.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=37;ExcessHet=3.0103;FS=5.356;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.90;ReadPosRankSum=1.46;SOR=1.814;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,21:37:99:560,0,349
chr5	117896554	rs143123876	A	G	118.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.80;SOR=2.833;VQSLOD=19.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr5	117896625	.	GTA	G	342.79	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050e-01;DP=35;ExcessHet=6.9897;FS=0.861;MQ=60.00;MQRankSum=0.00;QD=3.69;ReadPosRankSum=-5.180e-01;SOR=0.810;VQSLOD=5.32;culprit=QD	GT:AD:DP:GQ:PL	0/1:29,6:35:94:94,0,980
chr5	117938634	rs147234228	CACAT	C	899.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.260e-01;DB;DP=22;ExcessHet=3.0103;FS=6.179;MQ=60.00;MQRankSum=0.00;QD=19.56;ReadPosRankSum=1.47;SOR=2.115;VQSLOD=4.60;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,7:22:99:169,0,712
chr5	118309649	.	T	C	48.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.127e+00;DP=13;ExcessHet=3.0103;FS=7.160;MQ=54.25;MQRankSum=-3.315e+00;NEGATIVE_TRAIN_SITE;QD=3.71;ReadPosRankSum=-1.269e+00;SOR=2.804;VQSLOD=-3.871e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,3:13:57:57,0,308
chr5	118465215	rs4529225	G	A	397.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=4.804;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr5	118500981	rs11301800	TA	T	477.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.652;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=5.31;ReadPosRankSum=-5.300e-01;SOR=0.669;VQSLOD=5.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,12:30:99:160,0,262
chr5	118507216	rs11318105	CT	C	195.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.55;SOR=3.912;VQSLOD=6.33;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr5	118556350	rs2271059	C	T	3751.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.095e+00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.86;ReadPosRankSum=1.68;SOR=0.802;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1422,125,0
chr5	118576096	rs377456338	CT	C	46.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.944;DB;DP=85;ExcessHet=3.9794;FS=1.227;MQ=59.98;MQRankSum=0.00;QD=0.23;ReadPosRankSum=0.254;SOR=0.563;VQSLOD=5.16;culprit=QD	GT:AD:DP:GQ:PL	0/1:73,12:85:32:32,0,1653
chr5	118669094	rs250306	C	T	495.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.889;SOR=0.818;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:234,0,222
chr5	118669224	rs11959659	G	A	1830.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.784;DB;DP=70;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.678;SOR=0.694;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,38:70:99:865,0,712
chr5	118690998	rs3813309	A	G	2416.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.04;SOR=2.105;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1091,96,0
chr5	118691693	rs3797339	C	A	1462.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.570e-01;DB;DP=40;ExcessHet=3.9794;FS=0.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.25;ReadPosRankSum=-1.760e-01;SOR=0.824;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:583,0,502
chr5	118691784	rs3797341	T	C	5229.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=97;ExcessHet=3.9794;FS=3.302;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=0.632;SOR=0.528;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,47:97:99:1123,0,1106
chr5	118691888	rs3797343	A	C	3478.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707e+00;DB;DP=76;ExcessHet=3.9794;FS=6.991;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.317;SOR=0.364;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:852,0,1089
chr5	118691929	rs6595185	A	T	3993.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=2.604;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1452,131,0
chr5	118727224	rs3733855	A	G	2579.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.375e+00;DB;DP=32;ExcessHet=3.0103;FS=1.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.35;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1057,96,0
chr5	118788196	rs26180	C	G	812.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.029e+00;DB;DP=25;ExcessHet=3.9794;FS=1.572;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=-5.500e-02;SOR=0.460;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:361,0,349
chr5	118791832	rs32651	G	A	462.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.593e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.01;ReadPosRankSum=-1.108e+00;SOR=1.230;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,8:9:18:302,0,18
chr5	118807136	rs439954	A	G	658.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.429e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.76;MQRankSum=-8.120e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.34;ReadPosRankSum=-5.500e-01;SOR=1.981;VQSLOD=0.425;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:288,24,0
chr5	118809398	rs2451816	T	C	65.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=1.38;SOR=0.693;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:61:74,0,61
chr5	118809533	rs10601221	CCA	C	2073.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.090e-01;DB;DP=58;ExcessHet=3.9794;FS=1.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.633;SOR=0.919;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,32:58:99:1012,0,780
chr5	118811313	rs2259347	C	T	157.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.09;ReadPosRankSum=1.04;SOR=0.446;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,179
chr5	118811533	rs25640	G	A	2012.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.19;DB;DP=71;ExcessHet=3.9794;FS=4.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=1.71;SOR=0.807;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,41:71:99:1066,0,743
chr5	118813240	rs457106	T	C	1036.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.24;DB;DP=120;ExcessHet=3.0103;FS=0.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.64;ReadPosRankSum=-6.560e-01;SOR=0.593;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,46:120:99:1045,0,1685
chr5	118813316	rs463513	A	G	1297.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.395;SOR=0.590;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,16:49:99:398,0,983
chr5	118827601	rs2546210	C	T	868.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-2.960e-01;SOR=0.420;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:134,0,171
chr5	118837658	rs257969	T	C	644.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.390e-01;DB;DP=56;ExcessHet=3.0103;FS=1.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.50;ReadPosRankSum=0.861;SOR=0.892;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,27:56:99:653,0,748
chr5	118837833	rs460945	C	T	603.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.357e+00;DB;DP=36;ExcessHet=3.0103;FS=1.412;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=-4.620e-01;SOR=0.446;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,16:36:99:0|1:118837833_C_T:612,0,1262:118837833
chr5	118837834	rs55708333	A	G	1176.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.850e-01;DB;DP=36;ExcessHet=3.9794;FS=3.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.34;ReadPosRankSum=-4.620e-01;SOR=0.355;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,16:36:99:0|1:118837833_C_T:612,0,1262:118837833
chr5	118845089	rs32663	G	A	803.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=34;ExcessHet=3.9794;FS=0.832;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.45;ReadPosRankSum=-3.770e-01;SOR=0.539;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:243,0,605
chr5	118845139	rs32664	G	A	1465.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.653;DB;DP=26;ExcessHet=6.9897;FS=2.439;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=-5.600e-02;SOR=0.492;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:286,0,413
chr5	118861713	rs11205	A	G	3786.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=127;ExcessHet=3.9794;FS=7.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.94;ReadPosRankSum=0.879;SOR=1.059;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,56:127:99:1316,0,1551
chr5	118862971	rs2636961	C	T	1646.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DB;DP=42;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.318;SOR=0.684;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,18:42:99:489,0,637
chr5	118867173	rs17145464	G	C	318.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.93;ReadPosRankSum=-8.750e-01;SOR=1.179;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:51:327,0,51
chr5	118877529	rs377089667	TA	T	765.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980e-01;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=13.66;ReadPosRankSum=1.10;SOR=0.752;VQSLOD=5.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,5:30:42:42,0,530
chr5	118965609	rs2431372	C	A	1116.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=15;ExcessHet=3.9794;FS=6.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=0.879;SOR=0.133;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:234,0,178
chr5	118965623	rs2434599	A	G	1059.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.322;DB;DP=8;ExcessHet=3.0103;FS=2.465;MQ=60.00;MQRankSum=0.00;QD=28.64;ReadPosRankSum=1.12;SOR=0.346;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:325,24,0
chr5	118968221	rs328699	C	T	1881.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=4.892;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:574,45,0
chr5	118968423	rs328698	T	G	6985.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=158;ExcessHet=3.9794;FS=1.786;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=0.419;SOR=0.822;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,82:158:99:2006,0,1846
chr5	118969452	rs328695	G	A	2534.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.254e+00;DB;DP=19;ExcessHet=3.0103;FS=2.930;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.60;ReadPosRankSum=-1.389e+00;SOR=0.328;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:56:567,56,0
chr5	118969960	rs328694	C	T	7201.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=126;ExcessHet=3.9794;FS=0.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=-3.060e-01;SOR=0.663;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,54:126:99:1461,0,1868
chr5	118970770	rs2434600	C	T	3197.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=60;ExcessHet=3.9794;FS=2.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.19;ReadPosRankSum=0.868;SOR=0.932;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,21:60:99:450,0,935
chr5	118970935	rs988465	A	G	66.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.25;SOR=2.303;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	119816849	rs55765526	AT	A	409.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.40;ReadPosRankSum=1.65;SOR=0.437;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:42:42,0,71
chr5	120021819	rs1158194	G	A	10231.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=0.725;VQSLOD=19.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3702,356,0
chr5	121187497	rs7720502	A	G	631.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=9;ExcessHet=3.9794;FS=2.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.40;ReadPosRankSum=0.732;SOR=1.893;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:62:173,0,62
chr5	121311269	rs80029491	T	C	142.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.42;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.80;ReadPosRankSum=0.545;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:151,0,144
chr5	121330223	rs6595336	C	T	5983.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.34;SOR=2.093;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1547,146,0
chr5	121412412	rs78389649	CA	C	39.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.54;ReadPosRankSum=0.842;SOR=0.307;VQSLOD=6.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:48:48,0,113
chr5	121488203	rs2560306	G	A	4832.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.077;DB;DP=99;ExcessHet=6.9897;FS=7.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=0.490;SOR=0.445;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1232,0,1313
chr5	121488506	rs35262183	C	G	4946.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=196;ExcessHet=3.9794;FS=0.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=0.925;SOR=0.728;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,97:196:99:2526,0,2443
chr5	121488635	rs3217313	AT	A	5174.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.382;DB;DP=120;ExcessHet=6.9897;FS=3.062;MQ=60.00;MQRankSum=0.00;QD=15.00;ReadPosRankSum=-8.700e-02;SOR=0.536;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:62,58:120:99:1703,0,1825
chr5	121515195	rs11957829	A	G	536.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=1.44;SOR=0.936;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:152,0,144
chr5	121518309	rs9112	G	A	1299.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.666;DB;DP=40;ExcessHet=3.9794;FS=4.099;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=0.694;SOR=1.150;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:476,0,543
chr5	121518378	rs2303655	T	C	1960.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=22;ExcessHet=3.9794;FS=0.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.31;ReadPosRankSum=0.656;SOR=0.528;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:328,0,184
chr5	121726714	rs1946649	G	A	3765.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.87;SOR=3.570;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1055,99,0
chr5	121761021	rs2242224	G	A	366.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.56;ReadPosRankSum=0.220;SOR=0.712;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:375,0,324
chr5	121767643	rs77615391	C	T	1629.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.350;DB;DP=115;ExcessHet=3.0103;FS=3.668;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=-1.402e+00;SOR=0.407;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,64:115:99:1638,0,1189
chr5	121776301	rs2290987	T	C	664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.117e+00;DB;DP=45;ExcessHet=3.0103;FS=3.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.76;ReadPosRankSum=-1.970e-01;SOR=0.269;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,27:45:99:673,0,505
chr5	121779262	rs2737094	C	T	1584.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DB;DP=62;ExcessHet=3.9794;FS=1.384;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=0.403;SOR=0.846;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,23:62:99:510,0,998
chr5	121779390	rs3811879	G	C	837.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=63;ExcessHet=3.0103;FS=0.972;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=-1.224e+00;SOR=0.882;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,32:63:99:846,0,721
chr5	121779438	rs2737095	C	T	1302.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.476e+00;DB;DP=38;ExcessHet=3.9794;FS=1.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.09;ReadPosRankSum=1.75;SOR=0.468;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,22:38:99:596,0,450
chr5	121785398	rs2737092	T	C	475.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.800e-02;DB;DP=10;ExcessHet=1.5490;FS=7.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=0.845;SOR=3.126;VQSLOD=16.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:405,30,0
chr5	121799050	rs10059131	G	A	573.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.99;ReadPosRankSum=0.284;SOR=0.641;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,26:82:99:582,0,1473
chr5	122131082	rs2161391	A	G	4708.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.118e+00;DB;DP=78;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.15;ReadPosRankSum=1.99;SOR=0.641;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1009,0,1029
chr5	122135188	rs1903260	T	C	348.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.08;SOR=4.615;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	122137708	rs965821	A	G	7133.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.079;DB;DP=69;ExcessHet=3.0103;FS=3.271;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=-3.000e-03;SOR=0.501;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2375,207,0
chr5	122139008	rs35617924	GT	G	551.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=1.10;SOR=2.387;VQSLOD=6.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,6:6:18:172,18,0
chr5	122143798	rs11241658	G	A	123.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.431;SOR=0.527;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:30:71,0,30
chr5	122152521	rs375711631	G	GC	956.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.008e+00;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.77;ReadPosRankSum=-1.228e+00;SOR=0.976;VQSLOD=5.77;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,28:42:99:965,0,408
chr5	122161638	rs3213794	A	C	2133.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.26;DB;DP=24;ExcessHet=3.0103;FS=2.745;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.33;ReadPosRankSum=-1.400e-01;SOR=1.911;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:857,71,0
chr5	122161961	rs3217227	A	AT	664.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.718;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.78;ReadPosRankSum=0.080;SOR=1.911;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,9:9:27:280,27,0
chr5	122163401	rs725638	T	C	887.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.79;ReadPosRankSum=1.25;SOR=0.622;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,14:27:99:407,0,391
chr5	122165209	rs6885464	T	G	1244.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.65;ReadPosRankSum=-6.460e-01;SOR=0.941;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:352,0,161
chr5	122165317	rs13662	C	T	977.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.594;DB;DP=71;ExcessHet=3.0103;FS=3.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.76;ReadPosRankSum=-1.170e+00;SOR=1.168;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,42:71:99:986,0,581
chr5	122165470	.	TACACACACACAC	TACACAC,T	1577.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.88;SOR=4.565;VQSLOD=7.05;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,5,6:11:99:465,254,238,211,0,191
chr5	122181225	rs2303048	G	A	1356.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.007e+00;DB;DP=40;ExcessHet=3.9794;FS=1.125;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.08;ReadPosRankSum=0.447;SOR=0.548;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,20:40:99:544,0,597
chr5	122267456	rs246314	C	T	4748.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=58;ExcessHet=3.0103;FS=1.324;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.61;ReadPosRankSum=0.375;SOR=0.840;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1708,174,0
chr5	122272293	rs30043	G	C	750.63	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.965e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.64;ReadPosRankSum=-6.320e-01;SOR=2.833;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr5	122272641	rs30042	A	G	5887.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.90;SOR=3.049;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1248,102,0
chr5	122272688	rs77219854	G	T	192.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.466e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.02;ReadPosRankSum=-6.520e-01;SOR=0.340;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:201,0,379
chr5	122281709	rs5871017	G	GT	2513.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=33;ExcessHet=3.0103;FS=0.955;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=1.73;SOR=0.945;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,31:33:98:855,98,0
chr5	122301079	rs30055	T	G	4786.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.89;ReadPosRankSum=1.69;SOR=0.746;VQSLOD=6.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,43:44:99:1422,121,0
chr5	122359502	rs70988555	A	AAC	2587.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.272;DB;DP=44;ExcessHet=6.9897;FS=4.077;MQ=59.93;MQRankSum=0.00;QD=15.68;ReadPosRankSum=-5.920e-01;SOR=1.076;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,16:44:99:348,0,626
chr5	122359839	rs144851383	G	GAC	4052.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.51;SOR=2.687;VQSLOD=4.12;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:122359839_G_GAC:785,54,0:122359839
chr5	122359840	rs374638812	CGTTTTTT	C	4051.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=26.32;SOR=2.807;VQSLOD=4.11;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:54:1|1:122359839_G_GAC:784,54,0:122359839
chr5	122364683	rs10066632	C	A	1654.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.39;SOR=3.003;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:519,39,0
chr5	122372034	rs78974877	C	T	135.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.484;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-6.970e-01;SOR=0.693;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:144,0,137
chr5	122372402	rs28373879	G	C	12998.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.51;SOR=2.376;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3890,330,0
chr5	122372505	rs78028157	G	T	256.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.287e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.24;ReadPosRankSum=-9.120e-01;SOR=0.693;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,9:18:99:265,0,285
chr5	122425832	rs13182369	G	T	13144.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=300;ExcessHet=3.9794;FS=2.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.43;ReadPosRankSum=-1.079e+00;SOR=0.899;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:156,144:300:99:3320,0,3514
chr5	122425971	rs199942027	A	ACCTCCGCCT	4311.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.740e-01;DB;DP=46;ExcessHet=3.9794;FS=4.758;MQ=60.00;MQRankSum=0.00;QD=26.45;ReadPosRankSum=-5.180e-01;SOR=0.796;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,18:46:99:669,0,2716
chr5	122426334	rs71572187	GGGCGCC	G	5819.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.060e-01;DB;DP=68;ExcessHet=3.9794;FS=2.942;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.10;ReadPosRankSum=1.49;SOR=0.964;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:29,39:68:99:1543,0,1840
chr5	122436528	rs163188	C	G	999.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.053e+00;DB;DP=88;ExcessHet=3.0103;FS=4.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.36;ReadPosRankSum=-1.212e+00;SOR=0.386;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,40:88:99:1008,0,1416
chr5	122522744	rs335198	G	A	205.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.33;ReadPosRankSum=-5.660e-01;SOR=0.527;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:214,0,522
chr5	122682154	rs2303719	T	G	4184.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.61;SOR=3.912;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:1058,84,0
chr5	122682348	rs1047438	A	G	12702.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=118;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.54;SOR=0.762;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,118:118:99:3533,352,0
chr5	122685727	rs1047437	C	G	733.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=70;ExcessHet=3.0103;FS=0.912;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.48;ReadPosRankSum=1.35;SOR=0.852;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,29:70:99:742,0,988
chr5	122685801	rs485847	G	A	5382.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=1.623;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1799,170,0
chr5	122685906	rs35423173	CT	C	561.26	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.73;SOR=6.184;VQSLOD=6.32;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:208,24,0
chr5	122713839	rs5871043	TA	T	773.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.06;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=0.577;SOR=3.611;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:179,15,0
chr5	122714134	rs141010737	TAAAAAA	T	2096.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.586;DB;DP=22;ExcessHet=6.9897;FS=1.209;MQ=60.00;MQRankSum=0.00;QD=27.23;ReadPosRankSum=1.36;SOR=1.090;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,16:22:99:1|0:122714133_G_T:655,0,223:122714133
chr5	122718019	.	TAA	T	134.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.44;MQRankSum=0.967;QD=12.25;ReadPosRankSum=0.524;SOR=0.223;VQSLOD=0.244;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:32:0|1:122718019_TAA_T:97,0,32:122718019
chr5	122718044	rs11950066	G	T	400.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.230e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=59.16;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.34;ReadPosRankSum=0.842;SOR=1.329;VQSLOD=0.230;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:122718019_TAA_T:260,18,0:122718019
chr5	122718736	rs6595440	G	C	2933.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=43;ExcessHet=3.9794;FS=6.016;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.387;SOR=1.145;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1505,129,0
chr5	122720395	rs548948	T	C	364.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.11;SOR=4.615;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:85,6,0
chr5	122720923	rs13159477	T	A	396.71	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=-1.006e+00;SOR=1.179;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:170,12,0
chr5	122722370	.	T	A	400.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.55;MQRankSum=0.00;QD=9.54;ReadPosRankSum=0.422;SOR=0.519;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,11:11:33:321,33,0
chr5	122725578	rs72789870	A	G	449.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.29;DB;DP=36;ExcessHet=3.0103;FS=4.177;MQ=59.89;MQRankSum=-1.272e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=12.48;ReadPosRankSum=0.906;SOR=2.000;VQSLOD=-5.037e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,13:36:99:458,0,660
chr5	122727026	rs6876883	G	A	5370.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.40;DB;DP=88;ExcessHet=3.9794;FS=3.603;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.269;SOR=0.497;VQSLOD=7.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2674,264,0
chr5	122727138	rs590279	T	A	2153.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=7.941;VQSLOD=24.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:609,45,0
chr5	122727171	rs6877089	G	T	1023.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=6.593;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:359,27,0
chr5	122728913	rs35574017	C	T	1728.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.540e-01;DB;DP=21;ExcessHet=3.9794;FS=0.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.29;ReadPosRankSum=-1.752e+00;SOR=0.938;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:792,63,0
chr5	122734724	rs11419318	T	TA	436.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.530e-01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.66;ReadPosRankSum=0.760;SOR=0.262;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:187,21,0
chr5	122738682	rs10477645	T	C	67.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.59;SOR=0.693;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr5	122739421	rs7715577	G	C	4871.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.26;DB;DP=79;ExcessHet=3.9794;FS=1.428;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.92;ReadPosRankSum=-5.530e-01;SOR=0.708;VQSLOD=6.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2357,237,0
chr5	122753918	rs149208336	T	TCTTA	826.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.120e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.53;ReadPosRankSum=-7.900e-02;SOR=1.863;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr5	122754293	rs71574108	GTT	G	649.55	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.680e-01;DB;DP=12;ExcessHet=1.5490;FS=6.038;MQ=59.61;MQRankSum=0.00;QD=28.24;ReadPosRankSum=0.464;SOR=3.816;VQSLOD=3.14;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,12:12:36:408,36,0
chr5	122754416	rs7729285	A	G	229.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.74;ReadPosRankSum=-1.383e+00;SOR=1.863;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	122758167	rs62377766	A	T	2354.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.560e+00;DB;DP=54;ExcessHet=6.9897;FS=0.568;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-1.393e+00;SOR=0.790;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,32:54:99:852,0,560
chr5	122758268	rs6882791	G	C	3887.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.680e-01;DB;DP=59;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-1.050e+00;SOR=0.687;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1903,177,0
chr5	122909345	rs7712330	G	C	1601.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.58;SOR=5.943;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:431,30,0
chr5	122927339	rs6595463	G	A	70.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.01;SOR=2.303;VQSLOD=18.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	122931059	rs982529	T	A	491.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.72;SOR=5.136;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr5	122950330	rs3797534	G	C	232.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.12;ReadPosRankSum=-1.111e+00;SOR=1.863;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr5	123966143	.	AGTGTGTGT	A,AGT	3144.25	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=29;ExcessHet=3.0103;FS=0.000;MQ=59.60;QD=28.58;SOR=1.781;VQSLOD=3.52;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,13,14:29:99:1092,376,331,399,0,319
chr5	123966399	rs11953210	A	G	2233.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.49;DB;DP=97;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.412;SOR=0.665;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,54:97:99:1282,0,979
chr5	123966576	rs11959759	C	G	199.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.27;ReadPosRankSum=-3.660e-01;SOR=1.230;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:59:59,0,154
chr5	123973701	rs6896590	T	C	920.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.677e+00;DB;DP=16;ExcessHet=6.9897;FS=3.212;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.16;SOR=0.239;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,7:16:99:191,0,285
chr5	123973735	rs12655148	C	G	361.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.350e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.72;ReadPosRankSum=-1.750e-01;SOR=0.616;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:163,0,231
chr5	123974608	rs4371750	T	C	5169.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.31;SOR=1.003;VQSLOD=20.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1656,144,0
chr5	123974673	rs62370761	T	C	1427.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.176;DB;DP=34;ExcessHet=1.5490;FS=4.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.41;ReadPosRankSum=-1.210e-01;SOR=1.454;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,16:34:99:475,0,517
chr5	123979071	rs6878299	G	A	84.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.36;ReadPosRankSum=-9.920e-01;SOR=0.283;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:93:93,0,201
chr5	123979806	rs11743931	G	A	1166.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.622e+00;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.32;ReadPosRankSum=-4.050e-01;SOR=3.675;VQSLOD=17.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:212,0,141
chr5	123983915	rs6862252	G	T	4225.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.54;SOR=1.379;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1374,125,0
chr5	123984763	rs7708070	C	T	12698.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=167;ExcessHet=3.0103;FS=0.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.61;ReadPosRankSum=0.255;SOR=0.621;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,167:167:99:5111,500,0
chr5	123985484	rs11422549	C	CA	3047.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.408;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.28;ReadPosRankSum=0.336;SOR=0.876;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1166,99,0
chr5	124036555	rs6873550	C	T	1357.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.247e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=-8.320e-01;SOR=1.017;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:179,0,217
chr5	125695985	.	T	C	826.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DP=62;ExcessHet=3.0103;FS=0.993;MQ=60.00;MQRankSum=0.00;QD=13.33;ReadPosRankSum=0.607;SOR=0.914;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,33:62:99:835,0,643
chr5	125696140	rs11241887	G	A	2218.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=38;ExcessHet=3.9794;FS=4.758;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=0.739;SOR=0.295;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1305,114,0
chr5	125759524	rs34490811	A	ACT	2727.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.599;DB;DP=89;ExcessHet=3.9794;FS=0.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.318;SOR=0.746;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:44,45:89:99:1432,0,1439
chr5	125800836	rs6595711	C	T	434.52	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.87;ReadPosRankSum=1.03;SOR=0.610;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:341,27,0
chr5	125801394	rs6860957	T	C	1116.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.27;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.84;ReadPosRankSum=-1.540e-01;SOR=0.929;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:360,27,0
chr5	125802027	rs62394179	G	A	1249.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.76;SOR=2.494;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1266,111,0
chr5	125813676	rs6595712	A	G	443.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=4.977;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	125818909	rs4558984	C	T	523.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.000e-02;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=0.703;SOR=1.721;VQSLOD=23.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:253,21,0
chr5	125824819	rs4836266	C	T	529.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.150e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.85;ReadPosRankSum=-1.150e+00;SOR=3.912;VQSLOD=15.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr5	125828803	rs4358517	A	G	3127.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.142e+00;DB;DP=21;ExcessHet=3.0103;FS=2.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.58;ReadPosRankSum=-7.920e-01;SOR=0.294;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:787,63,0
chr5	125880951	rs4612066	G	T	571.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.90;SOR=5.421;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr5	125882343	rs10630162	T	TA	386.25	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.38;MQRankSum=0.00;QD=22.72;ReadPosRankSum=-3.190e-01;SOR=4.294;VQSLOD=2.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:108,15,0
chr5	125886071	rs1038381	C	T	676.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=66;ExcessHet=3.0103;FS=3.394;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.25;ReadPosRankSum=0.225;SOR=1.179;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:685,0,735
chr5	125887685	rs2306617	C	T	1289.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.00;SOR=5.610;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:769,57,0
chr5	125891500	rs62391521	C	T	2551.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.857;DB;DP=47;ExcessHet=1.5490;FS=6.303;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=1.22;SOR=0.247;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:639,0,582
chr5	125895126	.	G	GT	137.51	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.180;DP=7;ExcessHet=3.9794;FS=2.774;MQ=60.00;MQRankSum=0.00;QD=10.58;ReadPosRankSum=1.07;SOR=0.223;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,5:7:23:73,0,23
chr5	125903784	rs59916949	T	G	319.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.61;SOR=4.615;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:185,15,0
chr5	125904208	rs3734174	A	T	2510.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=5.136;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1091,90,0
chr5	125906344	rs6897789	T	C	2834.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.018;DB;DP=63;ExcessHet=1.5490;FS=0.717;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=1.17;SOR=0.627;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2024,189,0
chr5	125906768	rs6898430	T	C	291.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.07;SOR=4.174;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr5	125929000	rs375060692	A	AACACACACAC	1926	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DB;DP=24;ExcessHet=3.9794;FS=0.853;MQ=59.53;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=-5.800e-02;SOR=0.886;VQSLOD=7.55;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,9:24:99:412,0,1278
chr5	125929836	rs145704075	G	A	839.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.140e-01;DB;DP=60;ExcessHet=3.0103;FS=1.004;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-2.123e+00;SOR=0.556;VQSLOD=22.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,35:60:99:848,0,597
chr5	125944219	rs112502491	G	GTGTTTT	2161.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=2.608;VQSLOD=5.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:45:675,45,0
chr5	125967404	rs6862980	T	A	3500.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=60;ExcessHet=1.5490;FS=1.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=0.476;SOR=0.516;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,24:60:99:670,0,980
chr5	125967653	rs12655861	G	A	1352.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=41;ExcessHet=3.9794;FS=0.858;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=1.23;SOR=0.549;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,23:41:99:638,0,460
chr5	125967950	.	TAAAAAAA	T	79.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.94;ReadPosRankSum=-8.420e-01;SOR=1.179;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:87:87,0,138
chr5	125971699	rs7705714	C	T	1101.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.489;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.74;ReadPosRankSum=0.114;SOR=0.693;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,19:51:99:423,0,793
chr5	126145704	rs10645736	C	CCTT	735.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=-3.190e-01;SOR=2.833;VQSLOD=6.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,1:4:75:75,0,141
chr5	126145771	rs2271354	A	G	1823.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=17;ExcessHet=3.0103;FS=2.827;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.16;ReadPosRankSum=0.094;SOR=1.942;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:254,0,258
chr5	126156531	rs34618438	GT	G	1206.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DB;DP=29;ExcessHet=3.9794;FS=2.515;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=-4.390e-01;SOR=1.222;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,13:29:99:253,0,330
chr5	126158200	rs1510955	A	G	318.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.92;ReadPosRankSum=-1.383e+00;SOR=2.494;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,71
chr5	126161629	rs3763156	G	A	127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=12;ExcessHet=3.0103;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=1.52;SOR=0.093;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:136,0,227
chr5	126168150	rs2973594	G	C	200.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=7;ExcessHet=4.7712;FS=3.590;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=1.44;SOR=0.116;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:64:64,0,196
chr5	126171999	rs1051643	T	C	1999.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.457;DB;DP=46;ExcessHet=6.9897;FS=0.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.70;ReadPosRankSum=-4.440e-01;SOR=0.748;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,26:46:99:682,0,532
chr5	126187054	rs867512	C	G	402.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.11;ReadPosRankSum=-5.280e-01;SOR=0.892;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:94:235,0,94
chr5	126253538	rs36120055	CT	C	641.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.138e+00;DB;DP=51;ExcessHet=6.9897;FS=5.461;MQ=60.00;MQRankSum=0.00;QD=3.87;ReadPosRankSum=0.890;SOR=1.172;VQSLOD=4.60;culprit=QD	GT:AD:DP:GQ:PL	0/1:44,7:51:31:31,0,995
chr5	126746277	rs31483	C	T	10805.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.98;SOR=1.161;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3494,318,0
chr5	126792974	rs3812052	T	A	2522.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.63;SOR=1.771;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2539,225,0
chr5	126859091	.	A	G	340.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DP=16;ExcessHet=3.0103;FS=4.260;MQ=60.00;MQRankSum=0.00;QD=21.27;ReadPosRankSum=0.435;SOR=2.670;VQSLOD=18.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:349,0,172
chr5	126859406	rs31187	G	A	389.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DB;DP=10;ExcessHet=3.9794;FS=3.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.56;ReadPosRankSum=0.457;SOR=2.448;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:88:88,0,193
chr5	126865997	rs34252679	G	A	983.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.590e-01;DB;DP=100;ExcessHet=3.0103;FS=0.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=0.199;SOR=0.781;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,42:100:99:992,0,1497
chr5	126869270	rs233039	T	G	988.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=27;ExcessHet=3.9794;FS=1.060;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.68;ReadPosRankSum=1.98;SOR=0.553;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,15:27:99:386,0,308
chr5	126883336	rs371889746	CAGAGT	C	278.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=-1.200e-01;SOR=1.071;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,324
chr5	126887569	rs7522	G	A	1816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=73;ExcessHet=3.9794;FS=1.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=1.02;SOR=0.541;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,32:73:99:710,0,976
chr5	126889370	rs435795	C	T	722.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.08;ReadPosRankSum=0.272;SOR=0.358;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:139,0,142
chr5	126889640	rs418657	A	G	3082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.81;DB;DP=130;ExcessHet=3.9794;FS=1.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=1.54;SOR=0.808;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,69:130:99:1743,0,1611
chr5	126993249	rs45074	G	C	9752.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.320e-01;DB;DP=104;ExcessHet=3.0103;FS=1.216;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.87;ReadPosRankSum=1.21;SOR=0.824;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,48:104:99:1326,0,1512
chr5	126993263	rs248709	A	T	10514.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.952e+00;DB;DP=124;ExcessHet=3.0103;FS=0.792;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.16;ReadPosRankSum=-1.330e+00;SOR=0.637;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,64:124:99:1609,0,1574
chr5	127485599	rs2617618	C	T	5056.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=1.783;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1577,152,0
chr5	127522153	rs11382084	G	GT	1235.96	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.400e-01;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.32;ReadPosRankSum=-4.960e-01;SOR=1.249;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,20:21:38:477,38,0
chr5	127597262	rs10077809	T	A	540.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.49;SOR=5.421;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:557,42,0
chr5	127597518	rs10070365	G	A	2419.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.87;SOR=0.821;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2436,243,0
chr5	127607934	rs10038028	T	C	111.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=2.833;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr5	127613299	rs255695	G	T	350.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.41;SOR=4.615;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr5	127613791	rs426987	C	G	1163.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.779e+00;DB;DP=8;ExcessHet=3.0103;FS=3.727;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.71;ReadPosRankSum=-5.860e-01;SOR=2.419;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:325,24,0
chr5	127614472	rs190450	A	G	10331.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.60;DB;DP=122;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=-1.990e-01;SOR=0.706;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,121:122:99:3808,326,0
chr5	127622983	rs2042327	C	T	6867.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.40;SOR=1.064;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3363,315,0
chr5	127638464	rs26023	A	C	425.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.82;SOR=4.977;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr5	127640783	rs27713	G	A	5706.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.861e+00;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=-7.740e-01;SOR=0.662;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2096,180,0
chr5	127640861	rs27855	A	G	1185.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.19;SOR=3.545;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:745,60,0
chr5	127645287	rs469294	T	A	313.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.89;SOR=4.407;VQSLOD=19.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr5	127648500	rs10044959	A	G	3420.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.91;DB;DP=109;ExcessHet=0.4576;FS=2.667;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.38;ReadPosRankSum=-2.300e-02;SOR=1.699;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,107:109:99:3437,292,0
chr5	127686916	rs5871304	GA	G	370.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.14;SOR=4.174;VQSLOD=4.37;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:141,18,0
chr5	127692821	rs27457	T	C	550.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.129e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.23;ReadPosRankSum=-4.000e-01;SOR=1.828;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:249,18,0
chr5	127713701	rs33993324	G	GT	295.02	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=59.85;MQRankSum=0.00;QD=7.02;ReadPosRankSum=-1.210e-01;SOR=1.201;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:13:48:48,0,96
chr5	127777978	rs17164115	T	C	2202.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.486;DB;DP=106;ExcessHet=3.9794;FS=1.851;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.30;ReadPosRankSum=-2.650e-01;SOR=0.545;VQSLOD=6.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,53:106:99:1230,0,1204
chr5	127782033	rs7356632	T	G	134.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.94;ReadPosRankSum=0.00;SOR=0.260;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:58:58,0,154
chr5	127855152	rs140146961	GTTAAA	G	1201.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.917;DB;DP=36;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.69;ReadPosRankSum=-3.330e-01;SOR=0.735;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,16:36:99:612,0,1333
chr5	127872314	rs6865828	A	G	2273.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DB;DP=46;ExcessHet=6.9897;FS=5.349;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-7.150e-01;SOR=1.075;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,20:46:99:520,0,675
chr5	127872893	rs55694313	T	TG	1201.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.975;DB;DP=25;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=-2.700e-02;SOR=0.976;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,13:25:99:338,0,307
chr5	127872953	rs73348283	T	A	2811.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.896e+00;DB;DP=47;ExcessHet=6.9897;FS=2.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.74;ReadPosRankSum=0.821;SOR=1.153;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:762,0,792
chr5	127873114	rs73348287	G	C	10945.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.950;DB;DP=324;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=0.460;SOR=0.693;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:170,154:324:99:3794,0,4073
chr5	127873186	rs55715053	C	T	10283.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=294;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-4.540e-01;SOR=0.689;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:137,157:294:99:3717,0,3446
chr5	128301742	rs2577540	A	C	108.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.23;SOR=2.833;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr5	128301824	rs2526246	T	A	1405.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.631e+00;DB;DP=31;ExcessHet=1.5490;FS=7.313;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.67;ReadPosRankSum=-5.390e-01;SOR=0.109;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1011,93,0
chr5	128301885	rs2526247	T	G	2853.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.426e+00;DB;DP=75;ExcessHet=1.5490;FS=0.880;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=1.67;SOR=0.891;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2244,224,0
chr5	128301971	rs2577541	T	C	4613.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.582e+00;DB;DP=115;ExcessHet=1.5490;FS=3.475;MQ=59.96;MQRankSum=0.902;POSITIVE_TRAIN_SITE;QD=20.97;ReadPosRankSum=-9.140e-01;SOR=0.490;VQSLOD=2.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3433,345,0
chr5	128302368	rs147696009	CCT	C	2531.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.900e-01;DB;DP=77;ExcessHet=1.5490;FS=0.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.89;ReadPosRankSum=0.962;SOR=0.812;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2204,231,0
chr5	128302636	rs2577542	G	A	280.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.210e-01;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.06;ReadPosRankSum=-6.190e-01;SOR=0.976;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:241,18,0
chr5	128302700	rs2577543	G	A	74.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.39;SOR=2.303;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr5	128359247	rs31271	T	C	1588.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=2.885;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:404,39,0
chr5	128359612	rs31272	A	G	393.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.89;SOR=4.804;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr5	128430384	rs2059123	T	G	2848.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.79;SOR=6.154;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:741,51,0
chr5	128732672	rs13171514	A	G	258.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.85;SOR=1.085;VQSLOD=19.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:273,30,0
chr5	128797105	rs72663400	G	A	1492.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.140e-01;DB;DP=41;ExcessHet=3.9794;FS=3.963;MQ=60.00;MQRankSum=0.00;QD=15.71;ReadPosRankSum=1.35;SOR=1.123;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,27:41:99:717,0,374
chr5	128797156	rs182638734	C	G	1903.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.128;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.20;ReadPosRankSum=1.03;SOR=0.754;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,40:60:99:956,0,423
chr5	128797315	rs142924298	T	TCCCGGC	5704.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.550;DB;DP=122;ExcessHet=3.9794;FS=4.960;MQ=60.00;MQRankSum=0.00;QD=20.37;ReadPosRankSum=0.306;SOR=0.470;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,70:122:99:2874,0,3551
chr5	128863471	rs6595908	A	G	8529.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=1.387;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1889,183,0
chr5	128932138	rs3944133	T	C	754.74	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=6.091;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:176,15,0
chr5	128977732	rs17163231	A	G	1803.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.289e+00;DB;DP=35;ExcessHet=1.5490;FS=3.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=-1.519e+00;SOR=0.350;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:447,0,592
chr5	129015452	rs30645	T	C	998.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=44;ExcessHet=3.9794;FS=0.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.32;ReadPosRankSum=1.05;SOR=0.804;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:509,0,558
chr5	129015668	rs246443	T	C	2881.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.51;SOR=2.093;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:719,60,0
chr5	129020193	.	C	CATTAT	74.02	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.27;SOR=2.303;VQSLOD=6.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	129070972	rs141031120	T	TA	48.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.46;SOR=2.303;VQSLOD=5.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:62,6,0
chr5	129072943	rs1465686	G	T	5252.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=1.756;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1395,129,0
chr5	129100561	rs72792876	T	C	325.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.805e+00;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=1.22;SOR=0.430;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:334,0,307
chr5	129100819	rs35674869	AC	A	1256.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-02;DB;DP=24;ExcessHet=1.5490;FS=3.397;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.67;ReadPosRankSum=0.763;SOR=1.502;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,10:24:99:234,0,354
chr5	129240972	rs33917	G	C	3399.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650e-01;DB;DP=95;ExcessHet=1.5490;FS=0.603;MQ=60.00;MQRankSum=0.00;QD=19.43;ReadPosRankSum=-1.105e+00;SOR=0.642;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,41:95:99:954,0,1361
chr5	129244133	rs2431206	A	G	5933.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.91;SOR=2.485;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1774,165,0
chr5	129519874	rs10066410	G	A	1875.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.87;POSITIVE_TRAIN_SITE;QD=34.74;SOR=2.480;VQSLOD=5.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:373,33,0
chr5	129521126	rs2015018	A	G	4976.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=1.017;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2330,204,0
chr5	130497929	rs111439601	T	C	93.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=1.71;SOR=1.609;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:102,0,143
chr5	130498011	.	C	CA	194.61	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810e-01;DP=18;ExcessHet=6.9897;FS=4.523;MQ=59.84;MQRankSum=0.00;QD=3.97;ReadPosRankSum=-1.067e+00;SOR=0.257;VQSLOD=4.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,3:18:45:45,0,220
chr5	130500448	rs2278058	G	C	40.42	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.08;ReadPosRankSum=0.00;SOR=0.446;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:49:49,0,105
chr5	130500581	rs112487594	G	A	628.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.53;ReadPosRankSum=1.41;SOR=0.927;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:637,0,502
chr5	130500751	rs2278060	A	C	7735.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.351;DB;DP=152;ExcessHet=1.5490;FS=12.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.91;ReadPosRankSum=0.326;SOR=0.459;VQSLOD=16.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4926,456,0
chr5	130506901	rs111877128	TTG	T	214.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-1.295e+00;SOR=0.399;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,121
chr5	130517742	rs74935479	C	A	130.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=58.43;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.28;ReadPosRankSum=1.72;SOR=1.981;VQSLOD=-4.184e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,4:8:99:139,0,104
chr5	130517852	rs79908895	T	C	543.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=2.28;SOR=0.627;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,22:50:99:552,0,694
chr5	130522585	rs72787006	A	G	410.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.75;SOR=4.804;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:427,30,0
chr5	130522914	rs17165949	A	G	553.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.01;SOR=5.549;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:570,45,0
chr5	130695152	rs11951274	C	T	1083.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.855;DB;DP=53;ExcessHet=3.9794;FS=0.744;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.67;ReadPosRankSum=0.231;SOR=0.822;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:649,0,628
chr5	130733838	rs10478984	T	A	566.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=30;ExcessHet=3.9794;FS=16.737;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.11;ReadPosRankSum=1.85;SOR=3.166;VQSLOD=11.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:286,0,384
chr5	130764936	rs7735563	T	C	578.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.082e+00;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.12;ReadPosRankSum=-1.456e+00;SOR=0.552;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:587,0,681
chr5	130766491	rs143411413	C	T	796.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=70;ExcessHet=3.0103;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-4.310e-01;SOR=0.368;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,32:70:99:805,0,929
chr5	130766662	rs1291602	T	C	9268.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910e+00;DB;DP=111;ExcessHet=3.0103;FS=1.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.94;ReadPosRankSum=3.000e-03;SOR=0.613;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,58:111:99:1407,0,1564
chr5	130767121	rs6596022	T	C	679.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.565e+00;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.421;SOR=0.610;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:369,0,593
chr5	130777956	rs10060699	T	C	358.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.95;ReadPosRankSum=-7.330e-01;SOR=0.591;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,16:36:99:367,0,539
chr5	130808198	rs31241	T	C	3844.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=0.941;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1888,168,0
chr5	130815593	rs184949	C	T	269.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.91;SOR=4.174;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:77,6,0
chr5	130828642	.	G	A	163.70	PASS	AC=2;AF=1.00;AN=2;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.18;SOR=3.258;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:130828642_G_A:180,12,0:130828642
chr5	130828649	rs39600	A	T	561.44	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.93;SOR=5.549;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,4:4:12:1|1:130828642_G_A:180,12,0:130828642
chr5	130831365	rs40400	T	C	4997.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.59;DB;DP=39;ExcessHet=3.0103;FS=5.013;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.31;ReadPosRankSum=0.711;SOR=1.255;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,38:39:76:1272,76,0
chr5	130846190	rs116131520	A	C	1039.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=60;ExcessHet=3.0103;FS=1.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.32;ReadPosRankSum=-9.210e-01;SOR=0.894;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,36:60:99:1048,0,584
chr5	130867650	rs3836730	T	TA	181.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.91;SOR=4.174;VQSLOD=4.86;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:57,6,0
chr5	130867733	rs1029472	G	A	2553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.43;SOR=2.649;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:701,57,0
chr5	130982768	rs26006	A	G	3223.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.390e-01;DB;DP=54;ExcessHet=0.4576;FS=3.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.56;ReadPosRankSum=-8.020e-01;SOR=0.353;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,53:54:99:1704,120,0
chr5	131006082	rs27450	A	G	1731.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.23;SOR=3.467;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:672,51,0
chr5	131006356	rs26007	T	A	2104.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.274e+00;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=0.555;SOR=0.859;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:898,81,0
chr5	131008194	rs26008	T	C	11332.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.57;SOR=0.693;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3410,321,0
chr5	131039633	rs32107	C	A	326.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.04;SOR=4.407;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:213,15,0
chr5	131066577	rs7729787	A	C	2475.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.92;SOR=2.271;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1259,117,0
chr5	131066725	rs7730228	C	A	7430.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.76;SOR=1.070;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2350,222,0
chr5	131143324	rs924435	T	A	601.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.69;SOR=4.174;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:168,15,0
chr5	131190606	rs10070720	A	C	39.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.85;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:48:48,0,111
chr5	131214569	rs34025279	TA	T	314.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.250e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.52;ReadPosRankSum=-6.920e-01;SOR=1.230;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,4:4:12:96,12,0
chr5	131247592	rs10057128	T	G	5030.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.000e-02;DB;DP=75;ExcessHet=3.0103;FS=2.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.08;ReadPosRankSum=-2.870e-01;SOR=0.541;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,30:75:99:653,0,1098
chr5	131269348	rs199859322	G	GA	323.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.404;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.10;ReadPosRankSum=1.27;SOR=0.853;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,15:32:99:332,0,385
chr5	131312237	rs34019873	GA	G	275.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.763;DB;DP=9;ExcessHet=3.9794;FS=4.876;MQ=60.00;MQRankSum=0.00;QD=13.10;ReadPosRankSum=2.61;SOR=2.093;VQSLOD=4.02;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:80:80,0,106
chr5	131312327	rs370652	G	T	3286.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.450e-01;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.90;ReadPosRankSum=-3.040e-01;SOR=0.602;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,28:47:99:676,0,447
chr5	131322494	rs77938	C	T	1712.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=0.765;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:842,87,0
chr5	131322666	rs373822107	CCACACACTCACA	C	506.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.69;SOR=5.136;VQSLOD=5.88;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:262,18,0
chr5	131324119	rs71970	T	G	7654.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.45;SOR=2.004;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2522,222,0
chr5	131324250	rs3043838	C	CTG	10690.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.47;SOR=0.800;VQSLOD=5.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,129:129:99:5417,394,0
chr5	131325888	rs422130	A	G	6725.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.03;SOR=0.729;VQSLOD=20.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2049,216,0
chr5	131330054	rs253944	C	G	1925.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.03;SOR=3.171;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:951,72,0
chr5	131330158	rs253945	G	A	396	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=2.494;VQSLOD=22.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:210,18,0
chr5	131530441	rs2278398	A	G	3313.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.476e+00;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.38;ReadPosRankSum=-9.400e-02;SOR=1.285;VQSLOD=23.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,19:43:99:585,0,833
chr5	131534381	rs7701237	C	T	318.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.99;ReadPosRankSum=0.967;SOR=0.293;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:27:144,0,27
chr5	131534499	rs3749756	C	T	1596.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-01;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=0.232;SOR=0.838;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,17:34:99:427,0,446
chr5	131546280	rs154483	A	G	4214.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=60;ExcessHet=3.9794;FS=2.684;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=-9.300e-02;SOR=0.910;VQSLOD=6.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,21:60:99:441,0,1057
chr5	131553084	.	ATAGGTCTTGACCTGTGACAATT	A	1495.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.80;ReadPosRankSum=1.17;SOR=0.718;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,39:84:99:1504,0,8266
chr5	131553340	rs2301579	C	A	3199.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.705;DB;DP=57;ExcessHet=3.9794;FS=1.425;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.75;ReadPosRankSum=0.936;SOR=0.849;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,18:57:99:448,0,1148
chr5	131553428	rs3214098	T	TA	7520.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=101;ExcessHet=3.9794;FS=0.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.93;ReadPosRankSum=0.760;SOR=0.722;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:60,41:101:99:1331,0,2089
chr5	131553665	rs154485	A	G	1452.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.760e-01;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=0.856;SOR=0.880;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:352,0,133
chr5	131593336	rs70974026	C	CG	789.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.33;SOR=4.003;VQSLOD=4.46;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,7:7:26:255,26,0
chr5	131593363	.	GGCT	G	1756.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.232;DP=16;ExcessHet=3.0103;FS=2.004;MQ=59.74;MQRankSum=-5.790e-01;QD=29.68;ReadPosRankSum=0.052;SOR=1.473;VQSLOD=-7.500e-02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,9:16:99:0|1:131593363_GGCT_G:357,0,267:131593363
chr5	131593373	.	GCGGCGGCTC	G	1408.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.48;DP=20;ExcessHet=3.9794;FS=1.362;MQ=59.78;MQRankSum=0.00;QD=27.10;ReadPosRankSum=1.52;SOR=1.179;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,12:20:99:0|1:131593363_GGCT_G:480,0,300:131593363
chr5	131601798	rs80171636	T	A	217.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.18;ReadPosRankSum=0.792;SOR=1.863;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:52:226,0,52
chr5	131602166	rs1007602	T	C	8263.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=140;ExcessHet=3.9794;FS=2.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.61;ReadPosRankSum=0.749;SOR=0.530;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,89:140:99:2312,0,1050
chr5	131649186	rs270607	A	G	2670.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=22;ExcessHet=3.0103;FS=4.574;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=0.267;SOR=0.236;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,9:22:99:285,0,431
chr5	131658085	rs270600	T	C	4369.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=2.218;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1507,141,0
chr5	131660119	rs273915	G	C	1099.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.08;ReadPosRankSum=-1.085e+00;SOR=4.479;VQSLOD=13.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:62:262,0,62
chr5	131660431	rs273914	A	T	1254.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.88;ReadPosRankSum=-9.880e-01;SOR=1.609;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,4:12:99:124,0,250
chr5	131663062	rs272893	T	C	4253.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.194;DB;DP=31;ExcessHet=3.0103;FS=1.221;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.17;ReadPosRankSum=0.145;SOR=0.437;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,20:31:99:524,0,229
chr5	131667736	rs272885	A	G	660.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=59.70;POSITIVE_TRAIN_SITE;QD=34.74;SOR=2.948;VQSLOD=4.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:82,6,0
chr5	131670178	rs272880	C	T	65.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.75;ReadPosRankSum=0.431;SOR=1.179;VQSLOD=23.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:71,0,31
chr5	131670546	rs272879	C	G	5569.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.193e+00;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.01;ReadPosRankSum=-8.090e-01;SOR=0.665;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,31:48:99:875,0,436
chr5	131671769	rs272878	T	C	3041.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.830e-01;DB;DP=24;ExcessHet=3.0103;FS=5.383;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.91;ReadPosRankSum=-2.551e+00;SOR=1.682;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,13:24:99:335,0,280
chr5	131701279	rs367805	T	C	2989.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.286e+00;DB;DP=28;ExcessHet=3.0103;FS=1.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=-1.588e+00;SOR=0.917;VQSLOD=22.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:328,0,355
chr5	131705949	rs2631365	T	C	2066.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.513e+00;DB;DP=129;ExcessHet=3.0103;FS=0.704;MQ=59.77;MQRankSum=-1.982e+00;QD=16.02;ReadPosRankSum=-1.386e+00;SOR=0.811;VQSLOD=-5.545e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,73:129:99:2075,0,1622
chr5	131714344	rs5871452	A	AATC	54.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.03;ReadPosRankSum=1.09;SOR=0.132;VQSLOD=6.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,2:9:63:63,0,287
chr5	131719696	rs78399358	C	G	997.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=77;ExcessHet=3.0103;FS=0.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=-6.730e-01;SOR=0.529;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,39:77:99:1006,0,923
chr5	131719999	rs4551059	A	G	9040.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.86;SOR=1.738;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2646,231,0
chr5	131720070	rs274559	A	G	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.54;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=1.95;SOR=0.954;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:41:99:534,0,652
chr5	131721174	rs274558	A	G	1864.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=169;ExcessHet=3.0103;FS=1.198;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=-1.741e+00;SOR=0.591;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,78:169:99:1873,0,2063
chr5	131721204	rs274557	T	C	1591.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.050e-01;DB;DP=147;ExcessHet=3.0103;FS=2.096;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=0.203;SOR=0.524;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,65:147:99:1600,0,2170
chr5	131722951	rs274555	C	T	369.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=20;ExcessHet=3.0103;FS=7.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-9.500e-01;SOR=3.056;VQSLOD=16.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,11:20:99:378,0,229
chr5	131724950	rs274554	T	C	422.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.16;ReadPosRankSum=-1.036e+00;SOR=2.448;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:58:58,0,108
chr5	131730052	rs60522531	CA	C	1822.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750e-01;DB;DP=37;ExcessHet=1.5490;FS=1.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=-7.520e-01;SOR=0.955;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,14:37:99:370,0,649
chr5	131755477	rs4451042	G	T	676.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.210e-01;DB;DP=7;ExcessHet=3.0103;FS=4.197;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.20;ReadPosRankSum=-2.000e-01;SOR=2.737;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:271,21,0
chr5	131755651	rs1003533	C	T	2074.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.39;DB;DP=64;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=0.296;SOR=0.714;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,33:64:99:881,0,757
chr5	131755969	rs2285673	C	T	51.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:60:60,0,118
chr5	131785178	rs10036896	C	T	183.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.18;ReadPosRankSum=-1.981e+00;SOR=1.609;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:62:192,0,62
chr5	131792639	rs3214157	A	AT	4137.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=110;ExcessHet=1.5490;FS=0.663;MQ=60.00;MQRankSum=0.00;QD=18.72;ReadPosRankSum=0.052;SOR=0.614;VQSLOD=6.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,58:110:99:1323,0,1160
chr5	131796498	rs2522048	T	C	12161.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=1.018;VQSLOD=21.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4117,408,0
chr5	131796573	rs2522049	T	C	8425.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=90;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.32;SOR=1.514;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,90:90:99:2785,270,0
chr5	131796609	rs2522050	C	T	769.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=57;ExcessHet=3.0103;FS=1.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=2.19;SOR=0.497;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,28:57:99:778,0,802
chr5	131805416	rs2522062	A	G	86.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.350e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.38;ReadPosRankSum=-1.036e+00;SOR=0.693;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:95:95,0,99
chr5	131805591	rs2522063	G	T	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.120e-01;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=-2.510e-01;SOR=0.796;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,22:49:99:534,0,662
chr5	131805735	rs2706379	C	T	791.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-02;DB;DP=75;ExcessHet=3.0103;FS=1.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.310;SOR=0.430;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,33:75:99:800,0,1099
chr5	131811759	rs10719050	GA	G	779.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.89;SOR=6.358;VQSLOD=6.77;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,7:7:21:241,21,0
chr5	131811777	rs2706382	A	C	729	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.36;SOR=5.784;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr5	131819921	rs2070729	C	A	2463.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.94;DB;DP=88;ExcessHet=3.9794;FS=1.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.962;SOR=0.865;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,39:88:99:1122,0,1354
chr5	131821520	rs142244361	G	GAC	393.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.150e-01;DB;DP=5;ExcessHet=6.9897;FS=3.358;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.15;ReadPosRankSum=-3.440e-01;SOR=1.981;VQSLOD=6.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:54:54,0,75
chr5	131821709	rs111296401	G	T	134.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.18;ReadPosRankSum=1.01;SOR=0.223;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:143,0,107
chr5	131892357	rs2706335	C	T	7279.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.38;SOR=0.839;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1780,159,0
chr5	131892979	rs4526098	G	A	4812.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=1.578;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1630,152,0
chr5	131893329	rs2548986	T	C	459.40	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=22.95;SOR=4.977;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr5	131895286	.	T	C	335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.81;ReadPosRankSum=-1.449e+00;SOR=1.002;VQSLOD=21.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:344,0,534
chr5	131995843	rs1295686	T	C	2080.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.874e+00;DB;DP=29;ExcessHet=1.5490;FS=1.687;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.12;ReadPosRankSum=-2.206e+00;SOR=0.364;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:386,0,437
chr5	131995964	rs20541	A	G	9434.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.900e-02;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.57;ReadPosRankSum=0.513;SOR=0.695;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,49:102:99:1144,0,1264
chr5	132009710	rs2070874	C	T	5041.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110e-01;DB;DP=71;ExcessHet=3.9794;FS=3.252;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=0.846;SOR=0.965;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,37:71:99:914,0,801
chr5	132018132	rs2243289	A	G	3906.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.122;DB;DP=64;ExcessHet=3.9794;FS=1.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.77;ReadPosRankSum=1.36;SOR=0.611;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,27:64:99:591,0,953
chr5	132018169	rs2243290	C	A	3478.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.220e-01;DB;DP=65;ExcessHet=3.9794;FS=1.710;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.81;ReadPosRankSum=1.27;SOR=0.842;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:581,0,867
chr5	132035252	.	CT	C	254.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.390e-01;DP=21;ExcessHet=6.9897;FS=0.946;MQ=59.52;MQRankSum=0.00;QD=2.83;ReadPosRankSum=1.04;SOR=0.841;VQSLOD=5.25;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,5:21:59:59,0,314
chr5	132035399	rs10073911	C	A	238.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=0.256;SOR=0.425;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:147,0,127
chr5	132036252	rs1468216	T	C	4863.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.312;DB;DP=56;ExcessHet=3.0103;FS=2.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=-6.060e-01;SOR=1.057;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1828,168,0
chr5	132036489	rs1468215	A	T	300.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.185e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.67;ReadPosRankSum=-8.420e-01;SOR=0.269;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:170,0,177
chr5	132038199	rs3213639	C	T	1052.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.70;DB;DP=24;ExcessHet=3.9794;FS=5.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.61;ReadPosRankSum=0.547;SOR=1.605;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:305,0,413
chr5	132039132	rs2285700	C	A	1561.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.421;DB;DP=53;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.82;ReadPosRankSum=-3.220e-01;SOR=0.785;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:855,0,582
chr5	132042007	rs3798131	T	C	388.55	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.28;ReadPosRankSum=0.524;SOR=1.765;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:34:103,0,34
chr5	132042146	rs3798130	C	T	2038.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=1.01;SOR=0.651;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,24:41:99:535,0,387
chr5	132044738	rs2299006	C	G	1387.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.595e+00;DB;DP=13;ExcessHet=3.9794;FS=8.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.93;ReadPosRankSum=0.979;SOR=0.124;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:222,0,213
chr5	132046590	rs7737031	C	T	5001.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901e+00;DB;DP=87;ExcessHet=1.5490;FS=0.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.40;ReadPosRankSum=1.05;SOR=0.639;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,44:87:99:1125,0,1160
chr5	132046789	rs11740584	G	C	1692.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.44;DB;DP=46;ExcessHet=3.9794;FS=4.652;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=-1.046e+00;SOR=1.260;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,27:46:99:937,0,516
chr5	132056147	rs2074529	C	A	981.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.360e-01;DB;DP=30;ExcessHet=3.9794;FS=4.313;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=-7.700e-01;SOR=1.371;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:429,0,496
chr5	132069739	rs9784675	A	G	355.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=-8.420e-01;SOR=2.494;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:62:116,0,62
chr5	132069847	rs9784600	G	T	1069.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.291e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.43;ReadPosRankSum=-1.886e+00;SOR=0.804;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:139,0,305
chr5	132070242	rs7732520	C	T	1846.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.70;POSITIVE_TRAIN_SITE;QD=34.13;SOR=4.362;VQSLOD=4.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:429,30,0
chr5	132072308	rs35938541	T	C	129.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.230e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.54;ReadPosRankSum=0.00;SOR=1.329;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:61:138,0,61
chr5	132072913	rs2277066	G	C	2765.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.682e+00;DB;DP=39;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.73;ReadPosRankSum=1.00;SOR=2.409;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:622,0,767
chr5	132073002	rs2277065	A	G	7420.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.371e+00;DB;DP=142;ExcessHet=1.5490;FS=2.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.25;ReadPosRankSum=0.226;SOR=0.929;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,63:142:99:1739,0,2240
chr5	132083458	rs803056	G	C	3974.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-01;DB;DP=101;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=-5.060e-01;SOR=0.686;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1217,0,1232
chr5	132084956	rs803055	G	A	2027.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.805;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-1.480e-01;SOR=0.638;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:424,0,733
chr5	132086817	rs708461	G	C	2249.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.870e-01;DB;DP=33;ExcessHet=1.5490;FS=2.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.47;ReadPosRankSum=1.35;SOR=0.339;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,17:33:99:451,0,507
chr5	132093994	rs42403	C	T	1909.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.166e+00;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=0.864;SOR=0.511;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:501,0,387
chr5	132094205	rs17716311	G	A	1460.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172e+00;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.87;ReadPosRankSum=-4.600e-01;SOR=0.653;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,62:123:99:1469,0,1602
chr5	132096323	rs2067190	A	AAAAG	3415.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.863;DB;DP=43;ExcessHet=1.5490;FS=2.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.82;ReadPosRankSum=-7.080e-01;SOR=1.757;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:26,17:43:99:671,0,1431
chr5	132098242	rs30510	A	G	18773.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=201;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=30.23;SOR=0.729;VQSLOD=4.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,201:201:99:5813,603,0
chr5	132098420	rs30509	A	C	2849.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.57;DB;DP=28;ExcessHet=1.5490;FS=2.656;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.14;ReadPosRankSum=-3.000e-01;SOR=1.839;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:483,0,483
chr5	132099238	rs30508	A	G	938.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.214;DB;DP=15;ExcessHet=1.5490;FS=2.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.45;ReadPosRankSum=-6.190e-01;SOR=0.342;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,7:15:99:237,0,287
chr5	132099999	rs30507	A	G	10341.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088e+00;DB;DP=178;ExcessHet=3.9794;FS=0.570;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.24;ReadPosRankSum=-1.029e+00;SOR=0.623;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:104,74:178:99:1713,0,2689
chr5	132149322	.	G	GGCCGCCGCC	1247.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.075e+00;DP=38;ExcessHet=3.9794;FS=5.888;MQ=60.00;MQRankSum=0.00;QD=17.57;ReadPosRankSum=0.992;SOR=0.160;VQSLOD=4.92;culprit=FS	GT:AD:DP:GQ:PL	0/1:26,12:38:99:467,0,2544
chr5	132149684	rs40274	G	C	21105.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=215;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.40;SOR=0.699;VQSLOD=19.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,215:215:99:7035,644,0
chr5	132150024	rs4266393	C	G	3778.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.68;DB;DP=46;ExcessHet=3.0103;FS=2.488;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.23;ReadPosRankSum=-2.200e-02;SOR=0.372;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,23:46:99:780,0,668
chr5	132150132	rs115553646	C	A	487.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=23;ExcessHet=3.9794;FS=4.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=0.504;SOR=1.569;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:273,0,421
chr5	132150948	rs40470	T	G	9469.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.65;ReadPosRankSum=-5.000e-02;SOR=0.450;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,104:105:99:3357,305,0
chr5	132198100	rs10491279	C	T	2995.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.293e+00;DB;DP=52;ExcessHet=3.9794;FS=0.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=-1.850e-01;SOR=0.590;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,30:52:99:725,0,613
chr5	132198287	rs254285	C	G	725.52	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.98;ReadPosRankSum=-6.520e-01;SOR=1.445;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:101,0,158
chr5	132202399	rs30178	T	C	1321.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.89;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.34;ReadPosRankSum=0.926;SOR=3.442;VQSLOD=18.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:297,0,159
chr5	132202411	rs30177	C	G	1520.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.55;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.80;ReadPosRankSum=0.760;SOR=3.365;VQSLOD=18.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,10:16:99:399,0,191
chr5	132220748	rs45441396	C	T	637.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.902;DB;DP=30;ExcessHet=3.9794;FS=0.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=2.26;SOR=0.906;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,11:30:99:208,0,466
chr5	132220941	rs142786008	CGTGT	C,CGT	931.67	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.53;SOR=3.352;VQSLOD=5.02;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,4:8:99:284,122,110,134,0,112
chr5	132228133	rs11739417	A	G	2661.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.200e-01;DB;DP=70;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.530;SOR=0.699;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,41:70:99:941,0,673
chr5	132234152	rs34099243	C	CG	2373.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.98;ReadPosRankSum=-2.610e-01;SOR=0.933;VQSLOD=7.43;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,16:37:99:485,0,675
chr5	132239876	rs145768432	GAGATCGAGGCTGCAGTGAGCTACGACCACACCACTACACTCC	G	499.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DB;DP=25;ExcessHet=3.0103;FS=1.623;MQ=60.00;MQRankSum=0.00;QD=19.97;ReadPosRankSum=2.97;SOR=1.179;VQSLOD=4.78;culprit=ReadPosRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,13:25:99:0|1:132239876_GAGATCGAGGCTGCAGTGAGCTACGACCACACCACTACACTCC_G:508,0,671:132239876
chr5	132270663	rs10039125	T	A	2065.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.63;SOR=3.690;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:603,45,0
chr5	132273031	rs2288387	T	C	4936.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.74;SOR=1.256;VQSLOD=18.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:966,96,0
chr5	132334252	rs3087646	A	G	3558.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.915;DB;DP=87;ExcessHet=1.5490;FS=2.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.66;ReadPosRankSum=0.832;SOR=0.907;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,39:87:99:905,0,1239
chr5	132335951	rs2059783	A	G	2663.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.220e-01;DB;DP=75;ExcessHet=1.5490;FS=1.484;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-1.302e+00;SOR=0.912;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,32:75:99:684,0,1029
chr5	132336091	rs2059782	C	T	317.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.981e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.70;ReadPosRankSum=-1.981e+00;SOR=1.329;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:55:55,0,202
chr5	132361894	rs3885730	G	A	567.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.722e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.39;ReadPosRankSum=-6.180e-01;SOR=2.093;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:213,0,186
chr5	132425049	rs10075878	A	G	1157.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.105e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.29;ReadPosRankSum=-1.195e+00;SOR=0.551;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:240,0,257
chr5	132425415	rs61130801	G	GA	193.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.42;DB;DP=33;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=3.33;ReadPosRankSum=1.48;SOR=0.638;VQSLOD=5.15;culprit=QD	GT:AD:DP:GQ:PL	0/1:22,7:33:76:76,0,502
chr5	132433049	rs55643445	G	T	2140.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;DB;DP=76;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.44;ReadPosRankSum=2.13;SOR=0.659;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,32:76:99:810,0,1199
chr5	132435146	rs55717840	A	C	151.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.540e-01;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.00;SOR=0.412;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:107,0,65
chr5	132437613	.	C	CT	179.63	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.23;ReadPosRankSum=0.319;SOR=0.527;VQSLOD=5.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:6:45,0,6
chr5	132569260	rs35758896	GCCT	G	3330.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.095;DB;DP=130;ExcessHet=3.9794;FS=2.431;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.21;ReadPosRankSum=1.01;SOR=0.539;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:83,47:130:99:1719,0,4316
chr5	132652550	rs66521706	CTA	C	231.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=0.00;SOR=1.085;VQSLOD=7.51;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,6:10:99:0|1:132652550_CTA_C:240,0,284:132652550
chr5	132652553	rs68048792	CA	C	231.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.668e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.13;ReadPosRankSum=-3.030e-01;SOR=1.085;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,6:10:99:0|1:132652550_CTA_C:240,0,284:132652550
chr5	132918994	rs256266	G	A	1756.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=59.44;QD=30.28;SOR=1.382;VQSLOD=3.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:592,60,0
chr5	133328560	rs10491289	A	G	1222.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.110e-01;DB;DP=94;ExcessHet=3.0103;FS=2.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.00;ReadPosRankSum=-6.880e-01;SOR=0.700;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,54:94:99:1231,0,888
chr5	133450497	rs173424	A	G	124.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.15;SOR=1.609;VQSLOD=19.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	133482348	rs40273	G	A	3175.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.18;SOR=7.328;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1011,78,0
chr5	133509473	rs140239984	G	GT	885.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.290e-01;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=59.81;MQRankSum=-8.460e-01;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=0.489;SOR=0.627;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,28:50:99:894,0,671
chr5	133535130	rs11372222	T	TA	143.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.84;SOR=3.912;VQSLOD=5.00;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:80,9,0
chr5	133537438	rs2302598	T	A	3118.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.55;DB;DP=36;ExcessHet=3.0103;FS=1.643;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.28;ReadPosRankSum=0.051;SOR=0.538;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1130,108,0
chr5	133537479	rs2302599	T	G	3607.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.040e-01;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.212;SOR=0.680;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,54:54:99:1520,162,0
chr5	133541548	rs2239543	A	G	5414.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=67;ExcessHet=3.0103;FS=2.188;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.56;ReadPosRankSum=-9.000e-02;SOR=0.524;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,67:67:99:1915,207,0
chr5	133559757	rs2284317	T	C	395.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=4.804;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:152,12,0
chr5	133561589	rs3863186	G	C	32630.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.02;DB;DP=459;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=1.43;SOR=0.669;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,457:459:99:14292,1328,0
chr5	133642143	rs147263328	G	A	66.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=2.303;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	133642441	.	C	CT	151.08	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.59;ReadPosRankSum=0.319;SOR=0.818;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:8:47,0,8
chr5	133707164	rs376526735	T	TCGG	1542.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.650e-01;DB;DP=27;ExcessHet=3.9794;FS=8.967;MQ=60.00;MQRankSum=0.00;QD=22.35;ReadPosRankSum=-2.890e-01;SOR=0.053;VQSLOD=3.38;culprit=FS	GT:AD:DP:GQ:PL	0/1:11,16:27:99:662,0,401
chr5	133707247	rs35950497	CT	C	1217.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=135;ExcessHet=3.0103;FS=7.697;MQ=60.00;MQRankSum=0.00;QD=9.15;ReadPosRankSum=-3.120e-01;SOR=1.455;VQSLOD=4.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:75,58:135:99:1226,0,1717
chr5	133873572	rs329126	A	C	6319.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.07;DB;DP=74;ExcessHet=3.0103;FS=3.594;MQ=59.97;MQRankSum=-9.030e-01;POSITIVE_TRAIN_SITE;QD=28.73;ReadPosRankSum=-1.110e-01;SOR=1.123;VQSLOD=1.15;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,74:74:99:1|1:133873572_A_C:2959,230,0:133873572
chr5	133873577	rs2304082	C	T	1071.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750e-01;DB;DP=81;ExcessHet=3.0103;FS=8.327;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.23;ReadPosRankSum=-2.030e-01;SOR=0.217;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,42:81:99:0|1:133873572_A_C:1080,0,1052:133873572
chr5	133895299	rs2589403	T	C	270	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.637;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=58.79;MQRankSum=-3.660e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.00;ReadPosRankSum=0.00;SOR=2.303;VQSLOD=0.492;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr5	133896744	rs2589404	A	G	3364.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.603e+00;DB;DP=40;ExcessHet=3.0103;FS=2.185;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=-1.040e+00;SOR=0.253;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1497,120,0
chr5	133898136	rs10056247	C	T	711.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.261e+00;DB;DP=52;ExcessHet=3.0103;FS=1.289;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.68;ReadPosRankSum=0.915;SOR=1.148;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:720,0,797
chr5	133900111	rs329311	A	C	5941.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=62;ExcessHet=3.0103;FS=2.883;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=-7.610e-01;SOR=0.954;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1843,186,0
chr5	133902288	rs2044318	C	T	363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.440e-01;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-9.920e-01;SOR=0.914;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,12:34:99:372,0,709
chr5	133909475	rs329322	G	A	7006.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=82;ExcessHet=3.0103;FS=0.609;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.94;ReadPosRankSum=-3.390e-01;SOR=0.685;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,39:82:99:922,0,946
chr5	133943857	rs329297	C	G	383.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=4.615;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:133,9,0
chr5	133944043	rs201249311	AT	A	901.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.322;DB;DP=51;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.58;ReadPosRankSum=-8.600e-02;SOR=0.725;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,13:51:99:199,0,675
chr5	133956668	rs11558540	G	A	1297.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.384e+00;DB;DP=107;ExcessHet=3.0103;FS=2.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.23;SOR=0.456;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,56:107:99:1306,0,1252
chr5	133984645	rs61421945	CT	C	2221.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=120;ExcessHet=3.0103;FS=1.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=0.282;SOR=0.511;VQSLOD=7.48;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:52,68:120:99:2230,0,1658
chr5	134015495	.	TA	T	269.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.378e+00;DP=28;ExcessHet=3.0103;FS=3.332;MQ=60.00;MQRankSum=0.00;QD=9.62;ReadPosRankSum=-1.150e-01;SOR=0.153;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,13:28:99:278,0,317
chr5	134015523	rs10042142	C	G	2626.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.90;SOR=4.499;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:568,45,0
chr5	134028055	rs72800321	T	C	89.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.652;SOR=0.495;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:98:98,0,107
chr5	134033777	rs246341	G	A	5953.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.46;SOR=3.359;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1721,141,0
chr5	134109602	rs2059803	A	G	201.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.022e+00;DB;DP=17;ExcessHet=3.0103;FS=4.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.84;ReadPosRankSum=-1.222e+00;SOR=0.148;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:210,0,196
chr5	134113558	rs254713	G	A	2194.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.59;SOR=3.113;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:805,69,0
chr5	134133090	rs72667118	G	A	277.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.826e+00;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=58.97;MQRankSum=0.891;POSITIVE_TRAIN_SITE;QD=12.05;ReadPosRankSum=-9.770e-01;SOR=1.112;VQSLOD=0.245;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,9:23:99:286,0,469
chr5	134164284	rs34675300	GT	G	2168.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.16;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.047;SOR=0.957;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,41:44:54:1048,54,0
chr5	134223167	rs319601	A	G	580.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=-9.670e-01;SOR=0.836;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:129,0,180
chr5	134235613	rs319600	A	C	421.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.92;ReadPosRankSum=-1.150e+00;SOR=3.442;VQSLOD=17.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:122,0,30
chr5	134332316	rs13182891	G	A	454.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.511;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.90;ReadPosRankSum=0.816;SOR=1.609;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:101,0,208
chr5	134343661	rs10044000	C	T	3386.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.552;DB;DP=68;ExcessHet=1.5490;FS=13.458;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.68;ReadPosRankSum=-1.655e+00;SOR=1.909;VQSLOD=14.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,27:68:99:637,0,1060
chr5	134344497	rs299376	T	C	6460.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.391e+00;DB;DP=67;ExcessHet=3.0103;FS=1.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.59;ReadPosRankSum=-3.200e-01;SOR=1.008;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,27:67:99:704,0,1205
chr5	134344929	rs299378	C	G	4635.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.33;DB;DP=47;ExcessHet=3.0103;FS=5.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.42;ReadPosRankSum=-2.428e+00;SOR=1.609;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,23:47:99:766,0,708
chr5	134345259	rs143819145	T	TGGTGCCTGTGTAGAGAGCAGGTGGCCTCAGGCATCTGCAGC	2270.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.800e-02;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=59.94;MQRankSum=0.00;QD=28.38;ReadPosRankSum=-2.491e+00;SOR=3.180;VQSLOD=3.32;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:9,10:19:99:388,0,3166
chr5	134346304	rs877812	G	A	1318.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=20;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.48;ReadPosRankSum=0.617;SOR=1.071;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:236,0,379
chr5	134364406	rs36227765	TCCGCGC	T	1590.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.953;DB;DP=26;ExcessHet=1.5490;FS=3.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.47;ReadPosRankSum=2.70;SOR=1.685;VQSLOD=5.84;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:11,15:26:99:597,0,784
chr5	134364996	rs1131611	G	T	1733.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.670e-01;DB;DP=195;ExcessHet=3.0103;FS=1.173;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.89;ReadPosRankSum=-1.280e-01;SOR=0.788;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,76:195:99:1742,0,3129
chr5	134365070	rs10056994	C	T	897.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.561e+00;DB;DP=77;ExcessHet=3.0103;FS=3.279;MQ=60.00;MQRankSum=0.00;QD=11.65;ReadPosRankSum=0.904;SOR=1.426;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,29:77:99:906,0,1560
chr5	134365091	rs474853	T	C	3130.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=57;ExcessHet=1.5490;FS=10.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=-5.940e-01;SOR=3.209;VQSLOD=13.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,23:57:99:778,0,1143
chr5	134366873	rs10041469	T	G	561.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.66;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=1.68;SOR=0.760;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,15:29:99:570,0,453
chr5	134367329	rs11959243	A	G	478.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.13;ReadPosRankSum=0.137;SOR=0.293;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:487,0,364
chr5	134368363	rs11320740	CA	C	151.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.016e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.82;ReadPosRankSum=0.876;SOR=0.446;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,6:9:65:160,0,65
chr5	134368400	rs7700313	T	C	218.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.568;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=2.61;SOR=0.399;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:227,0,131
chr5	134368721	rs10716861	CA	C	1901.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=56;ExcessHet=1.5490;FS=2.866;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=1.38;SOR=1.300;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,24:56:99:580,0,807
chr5	134369258	rs72800397	G	A	253.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=21;ExcessHet=3.0103;FS=4.706;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.06;ReadPosRankSum=0.783;SOR=1.981;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:262,0,283
chr5	134573703	rs75406364	C	T	740.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.78;DB;DP=71;ExcessHet=3.0103;FS=2.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=2.09;SOR=1.187;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,27:71:99:749,0,1242
chr5	134679247	rs2292011	C	T	901.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.76;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.69;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.70;ReadPosRankSum=-4.110e-01;SOR=0.624;VQSLOD=5.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,6:17:99:190,0,356
chr5	134986006	rs801560	G	A	3246.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.986e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.25;ReadPosRankSum=0.898;SOR=0.865;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:980,87,0
chr5	134986196	rs10045717	C	T	3476.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.360e+00;DB;DP=77;ExcessHet=1.5490;FS=0.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.33;ReadPosRankSum=-2.262e+00;SOR=0.608;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2465,230,0
chr5	134986256	rs149152270	A	AAAC	6241.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.81;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.60;ReadPosRankSum=1.01;SOR=0.633;VQSLOD=7.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,50:51:99:2189,143,0
chr5	135138782	rs11738183	T	C	1766.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.860e-01;DB;DP=39;ExcessHet=1.5490;FS=1.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=-9.860e-01;SOR=0.490;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1104,116,0
chr5	135178124	rs2304075	T	C	6517.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=117;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.18;SOR=0.916;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,117:117:99:3556,351,0
chr5	135185775	rs4976496	T	G	404.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.22;SOR=3.258;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr5	135185855	rs4976497	A	G	836.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.086e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.25;ReadPosRankSum=-4.220e-01;SOR=1.609;VQSLOD=23.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:715,57,0
chr5	135185867	rs4976498	G	A	913.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.10;SOR=3.528;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:930,75,0
chr5	135186075	rs2304077	A	G	6094.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.78;DB;DP=128;ExcessHet=1.5490;FS=1.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=0.796;SOR=0.815;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4064,384,0
chr5	135188214	rs2304078	G	C	12445.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=210;ExcessHet=0.4576;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=32.84;SOR=1.807;VQSLOD=5.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,210:210:99:6719,630,0
chr5	135207382	rs2304080	C	T	5213.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=210;ExcessHet=3.9794;FS=2.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=0.014;SOR=0.809;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,91:210:99:2482,0,3124
chr5	135207858	rs59202648	A	AG	556.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.76;SOR=5.670;VQSLOD=5.36;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,6:6:18:214,18,0
chr5	135215575	rs2269926	A	T	1394.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.91;DB;DP=45;ExcessHet=3.9794;FS=3.030;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.66;ReadPosRankSum=-9.990e-01;SOR=1.258;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,20:45:99:709,0,740
chr5	135258105	rs39604	G	A	429.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.54;ReadPosRankSum=0.482;SOR=0.836;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,4:15:99:119,0,321
chr5	135276201	rs1160982	AGTT	A	7135.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.84;SOR=1.358;VQSLOD=4.64;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1800,120,0
chr5	135276314	rs40986	C	T	5560.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=1.665;VQSLOD=19.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1503,150,0
chr5	135276701	rs31548	T	C	3925.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.44;SOR=2.753;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1293,120,0
chr5	135276814	rs2066913	G	A	2502.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.210e-01;DB;DP=88;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=1.28;SOR=0.692;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,52:88:99:1382,0,876
chr5	135276847	rs31547	T	C	8903.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.81;SOR=0.964;VQSLOD=19.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:2716,261,0
chr5	135277394	rs11376205	G	GT	3233.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.22;SOR=2.071;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,32:32:96:974,96,0
chr5	135277503	rs31546	G	A	869.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.58;SOR=6.358;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:91,9,0
chr5	135282832	rs31529	T	A	2182.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=6.666;VQSLOD=24.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:597,48,0
chr5	135283222	rs977691	T	A	1086.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557e+00;DB;DP=29;ExcessHet=3.9794;FS=2.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.24;ReadPosRankSum=1.68;SOR=1.364;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,14:29:99:474,0,498
chr5	135287029	rs31517	T	C	4560.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=1.457;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1447,141,0
chr5	135365006	rs4976361	A	G	3764.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.90;SOR=1.609;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1197,114,0
chr5	135365129	rs4976362	T	C	1066.59	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.07;SOR=3.014;VQSLOD=19.87;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:135365129_T_C:315,21,0:135365129
chr5	135365136	rs4976460	G	T	973.53	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.21;SOR=3.258;VQSLOD=19.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:135365129_T_C:315,21,0:135365129
chr5	135379612	rs4976464	A	G	9425.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=1.900;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,63:63:99:2409,189,0
chr5	135382989	rs1442	G	C	4638.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.084e+00;DB;DP=109;ExcessHet=1.5490;FS=0.524;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.35;ReadPosRankSum=-1.990e-01;SOR=0.618;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3428,327,0
chr5	135389433	rs13159365	C	T	153.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.75;SOR=1.981;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr5	135513085	rs55765823	T	TC	15333.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=123;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.96;SOR=0.951;VQSLOD=4.23;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,123:123:99:4994,376,0
chr5	135692143	rs2649699	A	G	4558.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.404;DB;DP=51;ExcessHet=3.0103;FS=6.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.51;ReadPosRankSum=0.714;SOR=0.293;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1733,110,0
chr5	135700760	rs11307237	GA	G	887.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.33;DB;DP=10;ExcessHet=3.0103;FS=1.775;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=0.960;SOR=1.511;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,9:10:1:229,1,0
chr5	135700900	rs11404834	G	GA	1488.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.08;SOR=1.179;VQSLOD=3.62;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1505,159,0
chr5	136314132	rs11377127	C	CA	2019.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.708;DB;DP=18;ExcessHet=3.0103;FS=1.341;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.95;ReadPosRankSum=0.325;SOR=1.146;VQSLOD=7.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,5:18:99:129,0,537
chr5	136314133	rs149015101	A	AAC	357.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.300e+00;DB;DP=20;ExcessHet=3.0103;FS=2.128;MQ=60.00;MQRankSum=0.00;QD=17.86;ReadPosRankSum=1.39;SOR=0.283;VQSLOD=5.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,13:20:99:366,0,194
chr5	136315200	rs3217011	AT	A	12134.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=28.91;SOR=1.765;VQSLOD=4.58;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,91:91:99:3661,274,0
chr5	136320758	rs17521219	A	G	1252.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.994e+00;DB;DP=118;ExcessHet=3.0103;FS=2.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=0.572;SOR=0.498;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,52:118:99:1261,0,1751
chr5	136328367	rs3777224	C	T	2238.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=1.41;SOR=0.762;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,35:49:99:1085,0,310
chr5	136403289	rs718703	A	T	51.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.70;ReadPosRankSum=1.38;SOR=0.551;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:60:60,0,224
chr5	136448333	rs146759088	CAAAT	C	625.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=19;ExcessHet=3.9794;FS=1.606;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.33;ReadPosRankSum=-1.000e-01;SOR=1.127;VQSLOD=7.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,12:19:99:483,0,370
chr5	136448486	rs757422	A	G	157.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=3.611;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:169,15,0
chr5	136476436	rs11309240	AT	ATT,A	508.59	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.608;DB;DP=19;ExcessHet=3.0103;FS=4.053;MQ=59.68;MQRankSum=0.955;POSITIVE_TRAIN_SITE;QD=12.71;ReadPosRankSum=1.16;SOR=1.739;VQSLOD=0.183;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,7,3:19:1:97,1,101,55,0,182
chr5	136602443	rs72794574	T	A	173.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.611e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.39;ReadPosRankSum=0.00;SOR=0.473;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,2:8:25:0|1:136602443_T_A:25,0,212:136602443
chr5	136602444	rs35164765	T	A	442.16	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.11;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.58;ReadPosRankSum=-5.240e-01;SOR=2.985;VQSLOD=18.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:136602443_T_A:299,24,0:136602443
chr5	136833955	rs372446202	CCA	C	558.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.570e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.22;ReadPosRankSum=0.716;SOR=0.495;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,4:20:66:66,0,412
chr5	136969637	rs7713180	A	G	1539.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=33;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.81;ReadPosRankSum=0.510;SOR=0.776;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,19:33:99:550,0,364
chr5	136969793	rs2301708	C	T	504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-8.700e-01;SOR=0.594;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,21:49:99:513,0,762
chr5	136969953	rs2301709	C	T	273.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.00;SOR=0.346;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:65:65,0,159
chr5	136975400	rs11428340	C	CA	267.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=7;ExcessHet=3.9794;FS=3.859;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.38;ReadPosRankSum=-1.800e-01;SOR=2.531;VQSLOD=6.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:7:47:53,0,47
chr5	136975687	rs2074348	G	A	5142.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.615;DB;DP=130;ExcessHet=6.9897;FS=5.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.442;SOR=0.922;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,64:130:99:1630,0,1665
chr5	136975819	rs4370266	A	G	2909.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.495;DB;DP=81;ExcessHet=6.9897;FS=0.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=-4.020e-01;SOR=0.764;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,39:81:99:1010,0,1039
chr5	136997776	rs70979550	AC	A	1020.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.292;DB;DP=19;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-2.770e-01;SOR=0.689;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,8:19:99:227,0,333
chr5	136997803	.	A	AAG,AAAAG	916.35	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=7;ExcessHet=3.0103;FS=0.000;MQ=59.69;QD=28.64;SOR=4.804;VQSLOD=5.18;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,3,4:7:72:205,105,87,72,0,125
chr5	137013106	rs2967791	C	T	873.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.819;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.86;ReadPosRankSum=2.02;SOR=0.693;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:462,42,0
chr5	137013350	.	CA	C	53.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=1.46;ReadPosRankSum=-1.005e+00;SOR=0.693;VQSLOD=4.93;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,3:10:50:50,0,106
chr5	137027953	rs2301710	A	T	3116.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.63;SOR=2.409;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:935,78,0
chr5	137028029	rs2905608	T	C	5935.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.60;SOR=1.132;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1938,198,0
chr5	137056027	rs6887727	T	C	3083.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=25.66;SOR=2.247;VQSLOD=4.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:77:831,77,0
chr5	137089887	rs187197502	G	T	874.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.889e+00;DB;DP=67;ExcessHet=3.0103;FS=6.515;MQ=60.00;MQRankSum=0.00;QD=13.05;ReadPosRankSum=1.46;SOR=0.196;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,35:67:99:883,0,981
chr5	137144803	.	T	C	335.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.89;DP=36;ExcessHet=3.0103;FS=3.582;MQ=60.00;MQRankSum=0.00;QD=9.31;ReadPosRankSum=-6.380e-01;SOR=1.562;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:344,0,618
chr5	137206560	rs6890689	A	C	14806.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.12;SOR=0.936;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4321,401,0
chr5	137241856	rs700605	T	C	4568.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.322e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.88;ReadPosRankSum=-6.540e-01;SOR=0.731;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1576,150,0
chr5	137243696	rs732900	C	T	454.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.32;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr5	137244311	rs2003491	T	C	597.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.036e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.00;ReadPosRankSum=1.65;SOR=0.877;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,105
chr5	137244517	rs1880458	G	A	8709.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.140e-01;DB;DP=114;ExcessHet=3.0103;FS=0.514;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.67;ReadPosRankSum=0.092;SOR=0.634;VQSLOD=7.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3148,341,0
chr5	137257288	rs4304074	A	G	5007.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.16;SOR=2.372;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1479,126,0
chr5	137259179	rs12187140	T	C	5484.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=1.219;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1544,153,0
chr5	137259251	rs13188503	C	T	5964.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=0.693;VQSLOD=19.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1665,141,0
chr5	137271340	rs11743778	G	A	1398.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.189;DB;DP=39;ExcessHet=3.9794;FS=0.986;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.935;SOR=0.538;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,22:39:99:712,0,502
chr5	137271968	rs7701617	T	G	3859.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.11;SOR=2.281;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:842,72,0
chr5	137281708	rs1125979	A	C	7120.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.58;ReadPosRankSum=0.884;SOR=0.679;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2865,278,0
chr5	137282125	rs4240363	G	C	656.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.64;POSITIVE_TRAIN_SITE;QD=29.80;SOR=5.670;VQSLOD=7.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:222,15,0
chr5	137291955	.	C	T	61.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=20.43;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:70,0,34
chr5	137292133	rs3836896	C	CA	5940.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.936e+00;DB;DP=77;ExcessHet=3.0103;FS=0.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=-8.050e-01;SOR=0.602;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2339,231,0
chr5	137295823	rs9327802	T	C	5024.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.577e+00;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.46;ReadPosRankSum=0.910;SOR=0.739;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1863,177,0
chr5	137297923	rs4835738	C	T	575.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.47;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.30;ReadPosRankSum=-1.006e+00;SOR=2.419;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:239,18,0
chr5	137323117	rs7714536	A	G	3036.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.80;DB;DP=32;ExcessHet=3.0103;FS=2.520;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.61;ReadPosRankSum=1.39;SOR=0.448;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1154,95,0
chr5	137342589	rs3756686	T	C	3491.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DB;DP=54;ExcessHet=3.9794;FS=13.690;MQ=59.95;MQRankSum=1.09;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.79;ReadPosRankSum=0.433;SOR=1.946;VQSLOD=0.121;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,20:54:99:619,0,915
chr5	137346646	rs35163730	T	TA,TAAA	343.63	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-5.800e-01;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=58.84;MQRankSum=-4.780e-01;POSITIVE_TRAIN_SITE;QD=14.32;ReadPosRankSum=1.11;SOR=2.494;VQSLOD=0.245;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,3,2:5:43:132,60,43,61,0,73
chr5	137347403	rs12187885	G	A	1417.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.34;DB;DP=13;ExcessHet=3.0103;FS=3.061;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.45;ReadPosRankSum=0.411;SOR=1.396;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:464,39,0
chr5	137347498	rs10064910	G	A	3828.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=0.709;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1029,105,0
chr5	137354851	rs66908638	CA	C	1178	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.020e-01;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.61;ReadPosRankSum=0.091;SOR=2.925;VQSLOD=5.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:287,30,0
chr5	137372207	rs6596419	A	T	13166.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=143;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.99;ReadPosRankSum=0.703;SOR=0.238;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,142:143:99:4197,414,0
chr5	137419728	rs4574537	T	C	187.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-2.810e-01;SOR=0.255;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:196,0,427
chr5	137419989	rs2040862	C	T	1460.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.290e-01;DB;DP=148;ExcessHet=3.0103;FS=5.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.87;ReadPosRankSum=0.356;SOR=1.129;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,59:148:99:1469,0,2379
chr5	137420376	rs4835762	T	C	10970.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=1.212;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3229,299,0
chr5	137423338	.	CAAA	C,CAA	149.88	PASS	AC=1,1;AF=0.500,0.500;AN=2;DP=5;ExcessHet=3.0103;FS=0.000;MQ=57.88;QD=29.98;SOR=3.611;VQSLOD=4.57;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,3,2:5:44:164,44,44,94,0,75
chr5	137426447	rs6596422	G	A	9668.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.571;DB;DP=166;ExcessHet=3.9794;FS=3.474;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.03;ReadPosRankSum=0.883;SOR=0.473;VQSLOD=7.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,80:166:99:1937,0,2154
chr5	137427274	rs3860103	G	C	778.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=-1.113e+00;SOR=1.402;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:152,0,134
chr5	137451631	rs217266	C	A	696.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.01;SOR=5.892;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr5	137454358	rs6878575	C	G	1165.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.67;POSITIVE_TRAIN_SITE;QD=28.60;SOR=5.283;VQSLOD=4.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:438,30,0
chr5	137475787	rs423258	C	T	1187.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=42;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.30;ReadPosRankSum=0.687;SOR=0.721;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,26:42:99:625,0,417
chr5	137476416	rs412051	T	C	9714.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.54;SOR=0.816;VQSLOD=20.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3383,332,0
chr5	137480666	rs217263	G	C	222.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=-3.190e-01;SOR=2.833;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:146,12,0
chr5	137485292	rs217270	C	T	3097.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.95;SOR=2.110;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:827,75,0
chr5	137498740	rs150095583	A	AGGAAGAAAGAC	1816.72	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.33;SOR=5.670;VQSLOD=5.78;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:30:450,30,0
chr5	137501003	rs2269954	T	C	852.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.770;DB;DP=23;ExcessHet=3.9794;FS=5.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=-7.570e-01;SOR=0.163;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:324,0,208
chr5	137501396	rs2269957	A	C	619.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.838e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=58.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.35;ReadPosRankSum=0.564;SOR=1.255;VQSLOD=0.563;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,9:12:94:316,0,94
chr5	137506434	rs13155519	G	A	1478.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.415;DB;DP=31;ExcessHet=1.5490;FS=3.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.11;ReadPosRankSum=-6.610e-01;SOR=0.295;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,13:31:99:344,0,523
chr5	137507104	rs200476181	TA	T	2639.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.000e-02;DB;DP=45;ExcessHet=3.9794;FS=1.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.48;ReadPosRankSum=0.894;SOR=0.486;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,23:45:99:461,0,195
chr5	137513056	rs36124187	T	TA	353.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=6.539;MQ=59.16;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=0.598;SOR=2.786;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,3:6:75:75,0,75
chr5	137513369	rs10671440	G	GAA	1480.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.850e-01;DB;DP=31;ExcessHet=3.9794;FS=3.417;MQ=59.94;MQRankSum=0.00;QD=18.51;ReadPosRankSum=1.78;SOR=1.161;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,15:31:99:426,0,474
chr5	137515781	rs10038448	G	C	560.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.566;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.50;ReadPosRankSum=1.37;SOR=1.609;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,112
chr5	137548485	rs17234695	AC	A	184.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=1.38;SOR=1.085;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:63:63,0,63
chr5	137548809	rs2231472	A	G	2508.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.382e+00;DB;DP=261;ExcessHet=3.0103;FS=1.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.61;ReadPosRankSum=0.843;SOR=0.811;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:154,107:261:99:2517,0,4090
chr5	137588937	rs77536832	C	T	1559.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.549;DB;DP=106;ExcessHet=3.0103;FS=3.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.71;ReadPosRankSum=-8.340e-01;SOR=0.426;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,57:106:99:1568,0,1302
chr5	137589876	rs367624929	CT	C	414.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.270;DB;DP=62;ExcessHet=6.9897;FS=1.054;MQ=59.90;MQRankSum=0.00;QD=2.32;ReadPosRankSum=0.299;SOR=0.821;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:52,10:62:64:64,0,1118
chr5	137589879	rs116268521	T	C	499.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.498;DB;DP=79;ExcessHet=3.0103;FS=1.311;MQ=60.00;MQRankSum=0.00;QD=6.32;ReadPosRankSum=3.73;SOR=0.389;VQSLOD=19.60;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:49,30:79:99:508,0,1550
chr5	137593910	rs4320254	G	C	294.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=59.18;QD=33.05;SOR=1.609;VQSLOD=4.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:131,9,0
chr5	137661434	rs3734165	T	C	514.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.78;DB;DP=22;ExcessHet=3.9794;FS=3.018;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.883;SOR=1.238;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,7:22:99:213,0,385
chr5	137665323	rs3734166	G	A	2423.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.772;DB;DP=63;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.09;ReadPosRankSum=-2.620e-01;SOR=0.706;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,33:63:99:854,0,658
chr5	137665415	.	CT	C,CTT	175.94	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-4.050e-01;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.00;ReadPosRankSum=1.10;SOR=0.765;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,3,3:7:40:81,40,70,42,0,72
chr5	137665462	rs3734167	C	G	437.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.241;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.90;ReadPosRankSum=0.816;SOR=0.892;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	137673954	rs79586488	C	G	2015.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.991e+00;DB;DP=144;ExcessHet=3.0103;FS=1.975;MQ=60.00;MQRankSum=0.00;QD=13.99;ReadPosRankSum=-8.750e-01;SOR=0.962;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,66:144:99:2024,0,2577
chr5	137677224	rs2286060	C	A	117.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.160e-01;DB;DP=10;ExcessHet=3.0103;FS=2.430;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=0.511;SOR=1.609;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:126,0,181
chr5	137682225	rs76484728	A	G	241.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=1.72;SOR=1.270;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:155,0,100
chr5	137682312	rs138126056	C	CA	397.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.17;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.62;ReadPosRankSum=1.22;SOR=0.473;VQSLOD=5.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,10:28:99:184,0,416
chr5	137682714	rs2269953	T	G	1480.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.746;DB;DP=37;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=0.307;SOR=0.870;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:432,0,623
chr5	137708434	rs4835678	C	T	4163.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.276e+00;DB;DP=88;ExcessHet=1.5490;FS=6.412;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-3.780e-01;SOR=0.387;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:2938,263,0
chr5	137710013	rs12522867	T	G	1023.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.833e+00;DB;DP=20;ExcessHet=1.5490;FS=1.829;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=-1.973e+00;SOR=0.299;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:274,0,278
chr5	137717213	rs10073922	G	A	772.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.710e-01;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.958;SOR=0.703;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,35:79:99:781,0,1119
chr5	137717265	rs6865472	G	A	8785.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.88;SOR=0.934;VQSLOD=20.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2165,227,0
chr5	137728774	rs2269951	A	G	2277.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.300e-02;DB;DP=40;ExcessHet=1.5490;FS=3.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.03;ReadPosRankSum=2.33;SOR=0.326;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:596,0,618
chr5	137729134	rs77999870	C	CT	3200.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.606;DB;DP=95;ExcessHet=3.9794;FS=1.131;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.84;ReadPosRankSum=0.652;SOR=0.592;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,53:95:99:1695,0,1272
chr5	137735754	rs4835680	A	T	3024.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=3.030;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1131,93,0
chr5	137750669	rs13153017	C	A	48.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.65;ReadPosRankSum=-1.036e+00;SOR=0.446;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:57:57,0,112
chr5	137751128	rs75313335	A	T	286.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=9;ExcessHet=3.9794;FS=5.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=1.80;SOR=2.348;VQSLOD=19.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:100,0,212
chr5	137754695	rs7726234	T	C	2862.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.150e-01;DB;DP=69;ExcessHet=1.5490;FS=11.869;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=0.661;SOR=0.428;VQSLOD=17.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:1974,206,0
chr5	137755082	rs113756860	C	T	419.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.001e+00;DB;DP=41;ExcessHet=3.0103;FS=7.754;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=0.052;SOR=0.116;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,19:41:99:428,0,584
chr5	137760083	rs740077	A	C	268.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.58;ReadPosRankSum=0.912;SOR=0.446;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,7:20:99:170,0,471
chr5	137762551	rs60899302	CA	C	714.06	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e-02;DB;DP=16;ExcessHet=3.9794;FS=1.596;MQ=59.56;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.64;ReadPosRankSum=0.988;SOR=0.423;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,10:16:3:389,3,0
chr5	137762570	rs59368427	GAAAAAA	G	1182.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.841;DB;DP=27;ExcessHet=6.9897;FS=0.000;MQ=59.70;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.39;ReadPosRankSum=1.27;SOR=0.859;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,13:27:99:423,0,572
chr5	137763061	rs116175949	A	C	812.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=58;ExcessHet=3.0103;FS=5.136;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=0.179;SOR=1.108;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:821,0,759
chr5	137763615	rs2240334	A	C	579.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.913e+00;DB;DP=35;ExcessHet=3.0103;FS=9.259;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.55;ReadPosRankSum=0.334;SOR=0.044;VQSLOD=20.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,20:35:99:588,0,520
chr5	137765663	rs77413831	C	T	951.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.225e+00;DB;DP=59;ExcessHet=3.0103;FS=1.363;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=0.698;SOR=0.467;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,29:59:99:960,0,962
chr5	137765759	rs2269948	T	C	1144.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.056e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.36;ReadPosRankSum=0.189;SOR=0.743;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:809,57,0
chr5	137775081	rs1859466	C	T	270.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.192e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.82;ReadPosRankSum=1.76;SOR=0.804;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:143,0,185
chr5	137775273	rs2277067	G	A	249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.66;ReadPosRankSum=-1.264e+00;SOR=0.693;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:93:258,0,93
chr5	137775581	rs982085	C	G	2497.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.68;DB;DP=49;ExcessHet=1.5490;FS=4.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.73;ReadPosRankSum=2.05;SOR=0.290;VQSLOD=22.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1532,147,0
chr5	137776931	rs2269947	C	T	526.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.44;DB;DP=25;ExcessHet=3.0103;FS=3.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.05;ReadPosRankSum=1.59;SOR=0.199;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:535,0,275
chr5	137777269	rs12516269	A	G	688.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.575;DB;DP=61;ExcessHet=3.0103;FS=1.089;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.356;SOR=1.002;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,27:61:99:697,0,834
chr5	137777459	.	C	CA	38.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=3;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=12.82;ReadPosRankSum=0.431;SOR=2.225;VQSLOD=4.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,2:3:19:47,0,19
chr5	137780336	rs4835794	T	C	13282.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.86;SOR=1.243;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:4050,316,0
chr5	137780368	rs2240331	C	A	6649.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.567e+00;DB;DP=140;ExcessHet=1.5490;FS=3.091;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.50;ReadPosRankSum=0.484;SOR=0.926;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4820,418,0
chr5	137780631	rs2240330	C	T	1517.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.874e+00;DB;DP=40;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=1.10;SOR=0.651;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:788,0,629
chr5	137802404	rs11743810	C	T	2540.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.136e+00;DB;DP=33;ExcessHet=3.9794;FS=3.801;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=0.182;SOR=0.274;VQSLOD=7.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:433,0,676
chr5	137846042	rs6897807	G	A	250.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=58.12;QD=27.80;SOR=4.615;VQSLOD=3.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:204,18,0
chr5	137846155	rs4835685	A	G	6263.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.63;SOR=1.094;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1945,177,0
chr5	137847078	.	TACACACACAC	T	2048.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DP=26;ExcessHet=6.9897;FS=9.721;MQ=60.00;MQRankSum=0.00;QD=15.52;ReadPosRankSum=1.72;SOR=1.496;VQSLOD=2.96;culprit=FS	GT:AD:DP:GQ:PL	0/1:15,11:26:99:352,0,595
chr5	137847082	rs35404194	C	*,T	2856.32	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.97;SOR=1.214;VQSLOD=18.32;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,11,15:26:99:1421,647,596,431,0,360
chr5	137847090	rs112217165	CAT	C	1390.44	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.522;DB;DP=26;ExcessHet=3.9794;FS=2.491;MQ=60.00;MQRankSum=0.00;QD=12.99;SOR=0.451;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,12:26:99:523,0,398
chr5	137847092	.	TACAC	TAC,*	548.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.700e-02;DP=26;ExcessHet=3.0103;FS=1.805;MQ=60.00;MQRankSum=0.00;QD=5.22;SOR=0.521;VQSLOD=5.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,9,15:26:99:1308,642,594,390,0,331
chr5	137849659	rs154068	G	C	374.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.91;SOR=4.615;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr5	137902868	rs71574426	GA	G	1014.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.230e-01;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.15;ReadPosRankSum=-1.003e+00;SOR=0.655;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:25,3:28:2:2,0,634
chr5	137910671	rs256008	G	C	2357.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.68;SOR=1.712;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:831,69,0
chr5	138117938	rs700626	A	G	4525.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.059e+00;DB;DP=122;ExcessHet=6.9897;FS=2.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.29;ReadPosRankSum=1.13;SOR=0.886;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,62:122:99:1362,0,1476
chr5	138148064	rs13154573	T	C	1403.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=0.974;SOR=0.772;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,27:60:99:639,0,755
chr5	138148091	rs137979225	C	T	523.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.219;DB;DP=44;ExcessHet=3.0103;FS=2.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=0.470;SOR=1.154;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:532,0,589
chr5	138160056	rs6860780	A	G	283.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=4;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.72;ReadPosRankSum=1.17;SOR=0.693;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:71:73,0,71
chr5	138210895	rs288036	C	A	271.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=0.00;SOR=0.527;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:74,0,35
chr5	138216625	rs5871683	G	GA	1391.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.015;DB;DP=38;ExcessHet=6.9897;FS=11.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=0.547;SOR=2.044;VQSLOD=3.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:17,19:38:99:417,0,361
chr5	138221989	rs288028	G	C	1818.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.769e+00;DB;DP=68;ExcessHet=6.9897;FS=6.275;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.47;ReadPosRankSum=1.01;SOR=1.112;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,19:68:99:385,0,1243
chr5	138266546	rs1059110	G	A	6545.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=183;ExcessHet=6.9897;FS=2.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.20;ReadPosRankSum=0.452;SOR=0.532;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,101:183:99:2583,0,2129
chr5	138356756	rs10077896	G	A	2413.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.307e+00;DB;DP=51;ExcessHet=3.9794;FS=6.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=1.08;SOR=1.315;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,18:51:99:436,0,987
chr5	138356775	rs10077796	C	A	3061.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.483;DB;DP=58;ExcessHet=3.9794;FS=11.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.56;ReadPosRankSum=0.442;SOR=1.509;VQSLOD=17.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,22:58:99:539,0,991
chr5	138386859	rs3828600	C	A	614.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=0.536;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:97:218,0,97
chr5	138456815	rs3088052	T	C	3204.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=38;ExcessHet=3.9794;FS=1.287;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=1.97;SOR=0.812;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:485,0,326
chr5	138456994	rs11750382	G	A	297.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=2.19;SOR=1.781;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:99:100,0,106
chr5	138473077	rs11431215	C	CA	7385.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.42;SOR=1.128;VQSLOD=5.82;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2710,244,0
chr5	138642997	rs112107315	A	AT	861.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=-1.710e-01;SOR=0.983;VQSLOD=7.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:145,0,240
chr5	138643062	rs12153162	T	A	2050.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.542;DB;DP=73;ExcessHet=3.9794;FS=5.777;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=-4.300e-02;SOR=0.355;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,44:73:99:1073,0,648
chr5	138657471	rs146127792	CAAAAAAG	C	240.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.240e-01;DB;DP=2;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=34.36;ReadPosRankSum=0.524;SOR=2.584;VQSLOD=5.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	138657944	rs3816021	C	A	687.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=0.241;SOR=0.544;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:99:216,0,104
chr5	138658846	rs2288823	T	G	65.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:27:74,0,27
chr5	138662111	rs201476549	C	CT	349.74	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=23;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.99;ReadPosRankSum=1.72;SOR=0.653;VQSLOD=5.30;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,8:23:99:159,0,159
chr5	138713959	rs6596474	A	C	8721.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=1.644;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:2899,276,0
chr5	138714159	rs4257763	G	A	865.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.122;SOR=0.836;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:431,0,562
chr5	138714474	rs11950646	G	A	2581.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.860e-01;DB;DP=102;ExcessHet=3.9794;FS=6.286;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=-8.570e-01;SOR=1.130;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,42:102:99:1075,0,1646
chr5	138718476	rs11242461	T	C	2366.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.65;SOR=6.932;VQSLOD=23.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:585,48,0
chr5	138720108	rs11242462	C	T	11912.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-02;DB;DP=203;ExcessHet=3.9794;FS=1.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.40;ReadPosRankSum=2.50;SOR=0.568;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,101:203:99:2492,0,2553
chr5	138720156	rs12515989	C	T	6120.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.337;DB;DP=285;ExcessHet=3.9794;FS=1.101;MQ=60.00;MQRankSum=0.00;QD=11.88;ReadPosRankSum=1.14;SOR=0.586;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,137:285:99:3161,0,3482
chr5	138720336	rs6596476	T	C	6232.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=5.507;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1845,135,0
chr5	138723168	.	G	GT	47.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.010e-01;DP=22;ExcessHet=3.0103;FS=0.000;MQ=59.84;MQRankSum=0.00;QD=2.15;ReadPosRankSum=-1.820e-01;SOR=0.482;VQSLOD=5.28;culprit=QD	GT:AD:DP:GQ:PL	0/1:17,5:22:56:56,0,352
chr5	138724126	rs33937093	TG	T	3169.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=3.126;VQSLOD=5.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,29:29:87:924,87,0
chr5	138724457	rs9327846	A	G	2241.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=5.283;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:599,45,0
chr5	138724551	rs9327847	T	C	703.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.29;SOR=5.784;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:217,15,0
chr5	138728483	rs10078623	A	G	14574.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=136;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.71;SOR=1.581;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4635,408,0
chr5	138728533	rs10063870	C	T	11165.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DB;DP=173;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.11;ReadPosRankSum=1.11;SOR=0.652;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,81:173:99:2179,0,2488
chr5	138730037	rs11748963	T	C	1858.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.426e+00;DB;DP=112;ExcessHet=3.0103;FS=3.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.59;ReadPosRankSum=0.339;SOR=1.067;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,61:112:99:1867,0,1496
chr5	138730407	rs73255289	C	T	3207.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.948;DB;DP=267;ExcessHet=3.0103;FS=1.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.01;ReadPosRankSum=0.974;SOR=0.583;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:141,126:267:99:3216,0,3618
chr5	138732103	rs4365836	A	T	1055.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.920e-01;DB;DP=13;ExcessHet=3.9794;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.75;ReadPosRankSum=0.763;SOR=1.493;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:136,0,211
chr5	138732579	rs10900862	C	T	2360.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.960e-01;DB;DP=89;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=-4.570e-01;SOR=0.710;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,40:89:99:1130,0,1424
chr5	138738178	rs4074032	C	T	558.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.09;DB;DP=21;ExcessHet=3.9794;FS=6.396;MQ=59.67;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=0.700;SOR=2.229;VQSLOD=1.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:394,0,238
chr5	138754741	rs4835728	T	C	3142.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.250e+00;DB;DP=104;ExcessHet=6.9897;FS=2.499;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.44;ReadPosRankSum=-1.402e+00;SOR=0.561;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,44:104:99:960,0,1689
chr5	138773090	rs10900864	A	G	5014.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=110;ExcessHet=6.9897;FS=2.224;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-3.140e-01;SOR=0.793;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,56:110:99:1461,0,1260
chr5	138775173	rs3923059	T	C	9436.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.699;DB;DP=166;ExcessHet=3.9794;FS=0.576;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=0.404;SOR=0.594;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,94:166:99:2435,0,1537
chr5	138775301	rs3923060	C	T	2697.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.89;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=1.30;SOR=1.879;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,13:22:99:453,0,283
chr5	138852369	rs13153461	G	A	4799.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.116e+00;DB;DP=208;ExcessHet=3.9794;FS=0.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.27;ReadPosRankSum=1.34;SOR=0.719;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,102:208:99:2383,0,2736
chr5	138857919	rs1131769	T	C	7880.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.040e-01;DB;DP=141;ExcessHet=3.9794;FS=5.590;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=0.601;SOR=0.965;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,73:141:99:1847,0,1720
chr5	138861146	rs7447927	C	G	5646.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.161;DB;DP=160;ExcessHet=3.9794;FS=2.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.77;ReadPosRankSum=-6.320e-01;SOR=0.582;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,87:160:99:2532,0,1927
chr5	139061148	rs57638253	CT	C	3652.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.471;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.04;ReadPosRankSum=0.636;SOR=1.329;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,12:30:99:384,0,633
chr5	139213452	rs4912884	A	G	2581.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.60;SOR=3.258;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,25:25:75:1|1:139213442_T_G:812,75,0:139213442
chr5	139216901	rs11440487	A	AG	8995.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=96;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.24;SOR=2.172;VQSLOD=5.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3523,289,0
chr5	139217957	rs889019	A	T	693.85	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.84;SOR=4.514;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:171,12,0
chr5	139232299	rs2302984	C	A	384.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.315e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.35;ReadPosRankSum=2.04;SOR=0.646;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:393,0,206
chr5	139239515	rs3214446	C	CG	2629.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680e-01;DB;DP=49;ExcessHet=6.9897;FS=2.857;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.08;ReadPosRankSum=0.369;SOR=0.806;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:28,21:49:99:637,0,888
chr5	139245086	rs1800954	A	G	2637.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.450e-01;DB;DP=52;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.824;SOR=0.651;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:635,0,756
chr5	139251469	rs1800953	T	G	3992.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=122;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.72;SOR=1.071;VQSLOD=20.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4009,366,0
chr5	139260428	rs889022	T	C	4277.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=142;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=1.418;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,142:142:99:4294,426,0
chr5	139574050	rs11538394	G	A	90.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.510e-01;DB;DP=27;ExcessHet=3.0103;FS=6.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=3.34;ReadPosRankSum=-8.700e-02;SOR=0.061;VQSLOD=22.18;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,6:27:99:99,0,660
chr5	139625743	rs3822739	A	G	1042.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=91;ExcessHet=3.0103;FS=0.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.45;ReadPosRankSum=-6.520e-01;SOR=0.544;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,40:91:99:1051,0,1412
chr5	139641896	rs6867870	C	A	130.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.210e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.29;ReadPosRankSum=1.42;SOR=0.693;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:139,0,139
chr5	139660916	rs3777095	G	A	81.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.03;ReadPosRankSum=0.751;SOR=0.283;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:90:90,0,225
chr5	139661279	rs6893253	T	C	311.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=2.09;SOR=1.802;VQSLOD=22.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:95:320,0,95
chr5	139714564	rs2074613	C	T	501.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.41;SOR=2.985;VQSLOD=21.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr5	139744390	rs2112259	T	C	1149.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.54;SOR=6.994;VQSLOD=23.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:255,21,0
chr5	139825234	.	A	G	35.68	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=17.84;SOR=0.693;VQSLOD=13.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	139889899	.	T	C	52.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.890e-01;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.53;ReadPosRankSum=0.414;SOR=0.307;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:61:61,0,147
chr5	139905844	rs1051309	G	A	667.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019e+00;DB;DP=43;ExcessHet=3.0103;FS=9.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=2.56;SOR=1.004;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,26:43:99:676,0,442
chr5	139936680	rs143712554	ACC	A,AC	13057.23	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.514;DB;DP=110;ExcessHet=3.0103;FS=5.643;MQ=59.92;MQRankSum=-2.450e-01;POSITIVE_TRAIN_SITE;QD=27.32;ReadPosRankSum=0.915;SOR=1.036;VQSLOD=0.394;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,65,37:110:99:3012,792,817,1716,0,1491
chr5	139941228	rs250430	A	G	16042.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.213e+00;DB;DP=167;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.28;ReadPosRankSum=1.03;SOR=0.275;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,166:167:99:5191,459,0
chr5	140011315	rs2563298	C	A	1223.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.77;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=39.38;ReadPosRankSum=0.473;SOR=5.610;VQSLOD=20.46;culprit=QD	GT:AD:DP:GQ:PL	1/1:1,32:33:88:1240,88,0
chr5	140011468	rs4914	C	G	8417.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=271;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=0.984;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,271:271:99:8434,812,0
chr5	140024042	rs753280	T	C	1839.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.44;SOR=1.159;VQSLOD=20.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1856,165,0
chr5	140024432	rs702399	C	T	1973.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.66;SOR=1.519;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1990,150,0
chr5	140024491	rs702398	A	G	2297.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.46;SOR=1.498;VQSLOD=20.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2314,183,0
chr5	140027216	rs778593	T	C	3407.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.46;DB;DP=100;ExcessHet=0.4576;FS=2.678;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.07;ReadPosRankSum=-1.318e+00;SOR=1.708;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,98:100:99:3424,250,0
chr5	140027304	rs778594	T	C	1453.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=38;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.07;ReadPosRankSum=1.32;SOR=0.293;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,37:38:76:1470,76,0
chr5	140027623	.	GTGTGTGTATGTA	G	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.01;ReadPosRankSum=-1.125e+00;SOR=0.859;VQSLOD=5.36;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,11:29:99:241,0,445
chr5	140027625	rs60377719	GTGTGTATGTA	*,G	524.54	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=29;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=18.09;SOR=0.760;VQSLOD=1.71;culprit=QD	GT:AD:DP:GQ:PL	1/2:0,11,18:29:99:1302,536,445,332,0,241
chr5	140028326	rs56094200	GT	G	1303.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.171;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=11.74;ReadPosRankSum=0.793;SOR=0.653;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,46:54:23:1032,0,23
chr5	140031160	rs35439932	C	CA	127.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.20;ReadPosRankSum=-3.660e-01;SOR=0.527;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:5:136,0,5
chr5	140031537	rs1583005	G	A	1219.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.55;SOR=1.473;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1236,96,0
chr5	140032947	rs1864254	T	C	223.16	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.88;SOR=2.584;VQSLOD=20.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:240,21,0
chr5	140035710	rs5871748	TC	T	807.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=4.804;VQSLOD=5.65;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,22:22:66:824,66,0
chr5	140037272	rs778596	G	A	1463.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=0.952;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1480,150,0
chr5	140040665	rs778597	G	A	112.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.17;SOR=1.609;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:129,12,0
chr5	140040921	rs778598	T	C	193.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.63;SOR=1.981;VQSLOD=20.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:210,15,0
chr5	140041960	rs4801	T	G	640.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.68;SOR=3.383;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:657,51,0
chr5	140044292	rs2563335	C	A	145.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=3.258;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr5	140048209	rs2251860	T	C	3801.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=0.922;VQSLOD=19.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3818,342,0
chr5	140048267	rs2530245	T	C	11804.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.02;SOR=0.722;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3355,300,0
chr5	140048707	rs35983033	A	G	4831.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=0.4576;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=32.21;SOR=0.959;VQSLOD=4.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,150:150:99:4848,450,0
chr5	140049098	.	G	A	1802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.085e+00;DP=166;ExcessHet=3.0103;FS=1.961;MQ=60.00;MQRankSum=0.00;QD=10.86;ReadPosRankSum=0.296;SOR=0.880;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:98,68:166:99:1811,0,2864
chr5	140051983	rs2530243	C	T	3792.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=129;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.40;SOR=0.840;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,129:129:99:3809,387,0
chr5	140052271	rs2563333	A	G	3397.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=34.31;SOR=1.449;VQSLOD=19.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3414,297,0
chr5	140053351	rs2530242	G	C	554.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.77;SOR=5.283;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:571,39,0
chr5	140054485	rs2530241	C	T	3556.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=102;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=0.773;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3573,306,0
chr5	140057216	rs811382	G	A	1941.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=1.733;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1958,173,0
chr5	140062547	rs2530239	C	T	1265.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.91;SOR=5.549;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1282,96,0
chr5	140063091	rs801189	A	G	1313.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=2.774;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1330,110,0
chr5	140075011	rs112793807	C	CAGTTGATAT	208.17	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.71;SOR=2.833;VQSLOD=6.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:15:225,15,0
chr5	140075474	rs17119056	C	T	2297.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=68;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=1.022;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,68:68:99:2314,204,0
chr5	140076413	.	C	CT	147.73	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DP=6;ExcessHet=6.9897;FS=11.563;MQ=60.00;MQRankSum=0.00;QD=7.39;ReadPosRankSum=-7.320e-01;SOR=1.649;VQSLOD=1.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:2,4:6:13:62,0,13
chr5	140077699	rs2530234	A	G	4674.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.69;SOR=4.039;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1395,114,0
chr5	140080298	rs801168	T	C	270.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.73;SOR=2.584;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:287,21,0
chr5	140081423	rs801167	C	T	346.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.31;SOR=4.615;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:363,27,0
chr5	140081791	rs809635	A	G	1101.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.23;SOR=1.236;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1118,117,0
chr5	140081902	rs801166	G	A	344.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.67;SOR=4.615;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:361,27,0
chr5	140084394	rs2563301	A	T	630.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.94;SOR=4.407;VQSLOD=18.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:143,12,0
chr5	140167138	.	T	A	2956.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DP=249;ExcessHet=3.0103;FS=1.005;MQ=60.00;MQRankSum=0.00;QD=11.87;ReadPosRankSum=0.388;SOR=0.618;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:133,116:249:99:2965,0,3381
chr5	140181193	rs61730634	A	G	1209.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=98;ExcessHet=3.0103;FS=5.029;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-2.770e-01;SOR=1.197;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,47:98:99:1218,0,1307
chr5	140188128	rs143191768	T	G	2723.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.510e-01;DB;DP=237;ExcessHet=3.0103;FS=2.896;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.49;ReadPosRankSum=1.00;SOR=0.527;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,108:237:99:2732,0,3396
chr5	140201219	rs4151681	G	A	531.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.722e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.25;ReadPosRankSum=-1.756e+00;SOR=0.495;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,16:25:99:540,0,317
chr5	140208495	rs401565	G	C	2913.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.661;DB;DP=210;ExcessHet=3.0103;FS=0.506;MQ=59.95;MQRankSum=0.136;QD=13.87;ReadPosRankSum=1.99;SOR=0.641;VQSLOD=0.600;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:96,114:210:99:2922,0,2316
chr5	140227876	rs251352	G	A	187.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.80;SOR=3.611;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:204,15,0
chr5	140228164	rs251353	C	A	2630.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.47;SOR=0.934;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2647,243,0
chr5	140229086	rs251354	C	G	2817.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=0.4576;FS=0.000;MQ=56.46;POSITIVE_TRAIN_SITE;QD=33.94;SOR=1.725;VQSLOD=4.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2834,249,0
chr5	140229368	rs251355	G	C	8551.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.641e+00;DB;DP=264;ExcessHet=0.4576;FS=4.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.39;ReadPosRankSum=0.033;SOR=0.973;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,263:264:99:8568,750,0
chr5	140230370	rs369636	A	C	6772.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=150;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.72;SOR=1.502;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,150:150:99:1|1:140230370_A_C:6789,455,0:140230370
chr5	140230371	rs369639	A	C	6772.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.31;SOR=1.473;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,151:151:99:1|1:140230370_A_C:6789,455,0:140230370
chr5	140236950	rs251362	C	G	13813.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=452;ExcessHet=0.4576;FS=0.000;MQ=59.98;QD=30.56;SOR=0.795;VQSLOD=2.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,452:452:99:13830,1354,0
chr5	140237109	rs251363	T	G	9536.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=187;ExcessHet=1.5490;FS=3.559;MQ=59.28;MQRankSum=-3.128e+00;NEGATIVE_TRAIN_SITE;QD=25.30;ReadPosRankSum=-1.213e+00;SOR=0.518;VQSLOD=-1.566e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,187:187:99:6384,561,0
chr5	140237387	rs251364	T	G	11872.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.12;DB;DP=284;ExcessHet=1.5490;FS=0.635;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.48;ReadPosRankSum=0.437;SOR=0.662;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,284:284:99:9465,852,0
chr5	140237548	rs630162	A	G	19425.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.28;DB;DP=458;ExcessHet=1.5490;FS=2.220;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=-6.510e-01;SOR=0.505;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,458:458:99:15195,1373,0
chr5	140242451	rs11321479	GC	G	3163.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.69;SOR=3.339;VQSLOD=6.06;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,85:85:99:3180,256,0
chr5	140242479	rs251369	T	A	5666.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.851e+00;DB;DP=124;ExcessHet=1.5490;FS=6.679;MQ=59.94;MQRankSum=-2.244e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=23.81;ReadPosRankSum=-6.210e-01;SOR=1.228;VQSLOD=0.659;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,124:124:99:4237,370,0
chr5	140248539	rs192231	C	T	466.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.440e+00;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.12;ReadPosRankSum=-5.810e-01;SOR=2.584;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,14:15:3:478,3,0
chr5	140250252	rs251372	T	C	10254.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=278;ExcessHet=0.4576;FS=0.000;MQ=59.83;QD=27.89;SOR=0.949;VQSLOD=1.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,278:278:99:10271,836,0
chr5	140255792	rs251377	C	A	2976.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=0.4576;FS=0.000;MQ=59.91;POSITIVE_TRAIN_SITE;QD=31.33;SOR=0.714;VQSLOD=5.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2993,284,0
chr5	140257591	rs251378	C	T	170.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=-1.383e+00;SOR=1.609;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:119,9,0
chr5	140261677	rs59479	A	C	210.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.51;ReadPosRankSum=-3.660e-01;SOR=0.693;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,4:5:5:160,5,0
chr5	140263290	rs251380	T	G	8061.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.151e+00;DB;DP=165;ExcessHet=1.5490;FS=5.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.43;ReadPosRankSum=0.928;SOR=0.431;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,165:165:99:5734,496,0
chr5	140433389	rs246679	C	G	1213.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.816;DB;DP=54;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.89;ReadPosRankSum=1.73;SOR=0.761;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,28:54:99:710,0,635
chr5	140433488	rs141616383	C	T	282.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e+00;DB;DP=35;ExcessHet=3.0103;FS=3.220;MQ=60.00;MQRankSum=0.00;QD=8.06;ReadPosRankSum=-1.652e+00;SOR=1.329;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,12:35:99:291,0,714
chr5	140476653	rs1047372	G	A	5578.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131e+00;DB;DP=71;ExcessHet=3.9794;FS=1.071;MQ=41.53;MQRankSum=0.395;QD=25.02;ReadPosRankSum=0.567;SOR=0.799;VQSLOD=-5.093e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:46,25:71:99:0|1:140476653_G_A:929,0,3071:140476653
chr5	140476654	rs145066448	C	A	5578.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.260e-01;DB;DP=73;ExcessHet=3.9794;FS=1.049;MQ=42.07;MQRankSum=0.498;QD=24.47;ReadPosRankSum=0.936;SOR=0.778;VQSLOD=-4.921e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:47,26:73:99:0|1:140476653_G_A:929,0,3071:140476653
chr5	140480138	rs3214282	GC	G	236.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.90;ReadPosRankSum=-5.940e-01;SOR=0.188;VQSLOD=6.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,3:10:82:82,0,229
chr5	140480852	rs12515688	G	A	11297.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.439e+00;DB;DP=204;ExcessHet=3.9794;FS=2.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.07;ReadPosRankSum=-4.820e-01;SOR=0.922;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,108:204:99:2978,0,2547
chr5	140481475	rs3733699	A	T	5837.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930e-01;DB;DP=106;ExcessHet=3.9794;FS=6.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.71;ReadPosRankSum=-4.980e-01;SOR=0.447;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:58,48:106:99:1357,0,1639
chr5	140502343	rs3733698	C	T	10949.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.29;DB;DP=128;ExcessHet=3.9794;FS=8.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=0.229;SOR=1.266;VQSLOD=20.56;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,63:128:99:0|1:140502343_C_T:2425,0,3606:140502343
chr5	140502344	rs3733697	C	T	10949.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.749;DB;DP=128;ExcessHet=3.9794;FS=10.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.97;ReadPosRankSum=0.281;SOR=1.335;VQSLOD=19.13;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:65,63:128:99:0|1:140502343_C_T:2425,0,3606:140502343
chr5	140503237	rs246669	A	G	10329.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.14;DB;DP=241;ExcessHet=3.9794;FS=4.104;MQ=53.96;MQRankSum=-4.037e+00;NEGATIVE_TRAIN_SITE;QD=16.32;ReadPosRankSum=1.65;SOR=0.973;VQSLOD=-2.743e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,113:241:99:2818,0,3244
chr5	140516795	rs246726	C	T	6735.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.245;DB;DP=233;ExcessHet=3.9794;FS=9.347;MQ=59.64;MQRankSum=1.48;NEGATIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=1.34;SOR=0.702;VQSLOD=-1.401e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:103,130:233:99:3444,0,2687
chr5	140517174	rs400562	T	C	2335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DB;DP=75;ExcessHet=3.9794;FS=1.183;MQ=59.90;MQRankSum=0.869;QD=13.50;ReadPosRankSum=0.911;SOR=0.794;VQSLOD=0.841;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,40:75:99:1175,0,1027
chr5	140529711	rs4151693	C	T	215.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.362e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.525;SOR=0.307;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,2:11:45:45,0,347
chr5	140529778	rs4151694	C	G	1130.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.05;DB;DP=50;ExcessHet=3.9794;FS=1.921;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=0.490;SOR=0.943;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,19:50:99:525,0,748
chr5	140530529	rs3776096	G	A	6366.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.811;DB;DP=218;ExcessHet=3.9794;FS=0.525;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=1.97;SOR=0.766;VQSLOD=6.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,106:218:99:2883,0,2937
chr5	140531099	rs115507686	G	A	2831.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.680e-01;DB;DP=256;ExcessHet=3.0103;FS=1.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=-1.086e+00;SOR=0.793;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:141,115:256:99:2840,0,3672
chr5	140531175	rs246707	T	C	24529.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=243;ExcessHet=3.0103;FS=0.000;MQ=57.87;QD=33.65;SOR=0.746;VQSLOD=2.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,243:243:99:8039,730,0
chr5	140531592	rs55834559	C	T	5991.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.867e+00;DB;DP=204;ExcessHet=3.9794;FS=1.097;MQ=46.16;MQRankSum=0.661;QD=12.43;ReadPosRankSum=1.49;SOR=0.773;VQSLOD=-4.010e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:115,89:204:99:2301,0,3512
chr5	140531746	rs246703	C	G	12805.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.720;DB;DP=159;ExcessHet=3.0103;FS=0.696;MQ=58.75;MQRankSum=-4.450e-01;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=0.994;SOR=0.871;VQSLOD=1.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:93,66:159:99:1710,0,2457
chr5	140537363	rs62378895	C	T	10541.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=42.17;QD=29.77;SOR=2.668;VQSLOD=-4.260e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3432,290,0
chr5	140553581	rs2910313	G	C	7815.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=96;ExcessHet=3.0103;FS=0.571;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.290;SOR=0.773;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,45:96:99:1250,0,1285
chr5	140553856	rs2907330	G	A	19013.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.32;DB;DP=254;ExcessHet=3.0103;FS=0.000;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=0.548;SOR=0.737;VQSLOD=6.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:122,132:254:99:3674,0,2839
chr5	140554006	rs2907329	C	G	17565.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=243;ExcessHet=3.0103;FS=5.529;MQ=59.86;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=1.22;SOR=0.842;VQSLOD=6.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:127,116:243:99:3212,0,3306
chr5	140554189	rs4912601	G	C	13518.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.020e-01;DB;DP=242;ExcessHet=3.0103;FS=4.864;MQ=55.96;MQRankSum=0.897;NEGATIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-2.688e+00;SOR=0.409;VQSLOD=-2.138e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,94:242:99:2240,0,4039
chr5	140554481	rs1811237	G	T	2095.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.57;DB;DP=129;ExcessHet=3.9794;FS=3.616;MQ=60.00;MQRankSum=0.00;QD=9.61;ReadPosRankSum=2.21;SOR=0.978;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,37:129:99:908,0,2787
chr5	140554606	rs11741863	T	C	1410.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.97;DB;DP=105;ExcessHet=3.9794;FS=8.950;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.76;ReadPosRankSum=0.735;SOR=1.296;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,29:105:99:679,0,2117
chr5	140554808	rs6892507	T	A	4090.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-03;DB;DP=55;ExcessHet=3.0103;FS=2.915;MQ=60.00;MQRankSum=0.00;QD=26.39;ReadPosRankSum=-4.240e-01;SOR=1.040;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,24:55:99:574,0,824
chr5	140559320	rs17844498	G	A	14338.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.93;DB;DP=340;ExcessHet=3.0103;FS=1.164;MQ=46.53;MQRankSum=2.35;QD=18.34;ReadPosRankSum=-1.843e+00;SOR=0.578;VQSLOD=-5.034e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:229,111:340:99:2496,0,6060
chr5	140559532	rs2740582	G	C	11529.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.560e-01;DB;DP=146;ExcessHet=3.0103;FS=1.519;MQ=46.90;MQRankSum=2.52;QD=25.45;ReadPosRankSum=1.25;SOR=0.533;VQSLOD=-4.220e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,77:146:99:2245,0,1998
chr5	140559596	rs2697541	T	G	10140.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=52.91;QD=31.99;SOR=1.067;VQSLOD=0.647;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3549,333,0
chr5	140559914	rs2740583	T	C	555.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=50;ExcessHet=3.0103;FS=1.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=-1.091e+00;SOR=0.625;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,21:50:99:564,0,680
chr5	140561983	rs2204704	A	G	285.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=0.449;SOR=0.818;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,8:15:99:294,0,243
chr5	140563574	rs2697534	A	G	689.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.440;DB;DP=150;ExcessHet=3.0103;FS=3.462;MQ=54.56;MQRankSum=-8.300e-02;NEGATIVE_TRAIN_SITE;QD=4.60;ReadPosRankSum=-2.130e+00;SOR=0.738;VQSLOD=-3.147e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,37:150:99:698,0,4589
chr5	140563579	rs17844646	C	T	5635.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.30;DB;DP=144;ExcessHet=3.9794;FS=4.463;MQ=53.01;MQRankSum=5.96;QD=14.38;ReadPosRankSum=2.35;SOR=0.916;VQSLOD=-3.520e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,112:144:99:2776,0,1011
chr5	140563931	rs13158239	T	C	5474.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.73;DB;DP=146;ExcessHet=3.0103;FS=0.453;MQ=44.41;MQRankSum=-9.247e+00;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=-1.630e+00;SOR=0.754;VQSLOD=-4.547e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:110,36:146:99:799,0,2610
chr5	140564048	rs17844664	G	C	2654.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.507e+00;DB;DP=150;ExcessHet=3.9794;FS=7.062;MQ=52.35;MQRankSum=-3.596e+00;NEGATIVE_TRAIN_SITE;QD=8.65;ReadPosRankSum=1.13;SOR=0.755;VQSLOD=-2.327e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,55:150:99:1248,0,2715
chr5	140564088	rs13176519	C	T	2944.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=137;ExcessHet=3.9794;FS=1.988;MQ=55.11;MQRankSum=-2.131e+00;NEGATIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.892;SOR=0.569;VQSLOD=-3.210e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,66:137:99:1478,0,1727
chr5	140564263	rs17844666	C	T	2274.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.013e+00;DB;DP=76;ExcessHet=3.9794;FS=1.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=1.55;SOR=0.585;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,42:76:99:1216,0,1056
chr5	140566952	rs998793	C	T	947.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.200e-01;DB;DP=73;ExcessHet=3.0103;FS=3.134;MQ=58.18;MQRankSum=-8.270e-01;NEGATIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-1.018e+00;SOR=1.083;VQSLOD=-2.079e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,39:73:99:956,0,873
chr5	140567264	rs2740588	G	T	2623.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.051e+00;DB;DP=121;ExcessHet=3.9794;FS=0.983;MQ=58.44;MQRankSum=0.594;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=1.03;SOR=0.679;VQSLOD=0.319;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,48:121:99:1116,0,1922
chr5	140567445	rs17844512	A	G	1285.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.140e-01;DB;DP=43;ExcessHet=3.9794;FS=4.675;MQ=59.19;MQRankSum=-2.305e+00;NEGATIVE_TRAIN_SITE;QD=11.17;ReadPosRankSum=1.60;SOR=1.171;VQSLOD=-2.279e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,19:43:99:514,0,702
chr5	140567608	rs11167743	C	T	1080.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.011e+00;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.18;ReadPosRankSum=-7.180e-01;SOR=0.692;VQSLOD=22.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,51:132:99:1089,0,2145
chr5	140568026	rs2697531	T	C	3036.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.520e-01;DB;DP=80;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.70;ReadPosRankSum=1.79;SOR=0.688;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:44,36:80:99:0|1:140568026_T_C:922,0,1323:140568026
chr5	140568034	rs33974901	C	CA	13917.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.21;SOR=0.858;VQSLOD=5.48;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,81:81:99:1|1:140568026_T_C:3329,250,0:140568026
chr5	140568796	rs2860540	A	G	1539.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.000e-01;DB;DP=245;ExcessHet=3.0103;FS=1.699;MQ=47.74;MQRankSum=-4.883e+00;POSITIVE_TRAIN_SITE;QD=6.28;ReadPosRankSum=1.18;SOR=0.822;VQSLOD=-3.257e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:169,76:245:99:1548,0,4412
chr5	140568998	rs1811235	C	T	2179.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.142;DB;DP=102;ExcessHet=3.9794;FS=12.032;MQ=51.23;MQRankSum=-2.225e+00;NEGATIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=-7.250e-01;SOR=0.657;VQSLOD=-2.701e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,47:102:99:1187,0,1447
chr5	140569353	rs3733691	G	A	827.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.424e+00;DB;DP=17;ExcessHet=3.9794;FS=2.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.80;ReadPosRankSum=-6.580e-01;SOR=0.176;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:254,0,327
chr5	140572668	rs597064	C	T	5441.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131e+00;DB;DP=48;ExcessHet=3.0103;FS=9.074;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.10;ReadPosRankSum=-1.080e-01;SOR=0.318;VQSLOD=19.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,31:48:99:949,0,461
chr5	140573439	rs610836	G	C	14340.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.804;DB;DP=144;ExcessHet=3.0103;FS=4.265;MQ=54.84;MQRankSum=-3.879e+00;NEGATIVE_TRAIN_SITE;QD=34.72;ReadPosRankSum=0.604;SOR=0.602;VQSLOD=-2.085e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:84,60:144:99:0|1:140573439_G_C:2249,0,4633:140573439
chr5	140573442	rs622424	C	G	14407.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=149;ExcessHet=3.0103;FS=3.108;MQ=54.41;MQRankSum=-3.316e+00;NEGATIVE_TRAIN_SITE;QD=34.47;ReadPosRankSum=0.809;SOR=0.674;VQSLOD=-2.492e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:89,60:149:99:0|1:140573439_G_C:2274,0,4699:140573439
chr5	140573754	rs702386	A	C	19958.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=411;ExcessHet=3.0103;FS=0.000;MQ=54.40;MQRankSum=1.30;NEGATIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=0.380;SOR=0.703;VQSLOD=-2.689e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:268,143:411:99:3313,0,6997
chr5	140573844	.	C	T	1437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.968;DP=233;ExcessHet=3.0103;FS=3.436;MQ=48.48;MQRankSum=3.87;QD=6.17;ReadPosRankSum=-2.176e+00;SOR=0.941;VQSLOD=-5.150e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:166,67:233:99:1446,0,4553
chr5	140580931	rs799834	C	G	28572.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=266;ExcessHet=3.0103;FS=2.765;MQ=55.37;MQRankSum=-1.145e+00;NEGATIVE_TRAIN_SITE;QD=30.20;ReadPosRankSum=1.96;SOR=0.778;VQSLOD=-2.484e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:125,141:266:99:3930,0,3295
chr5	140581510	rs638054	G	T	1577.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.547;DB;DP=51;ExcessHet=3.9794;FS=1.363;MQ=59.94;MQRankSum=0.843;POSITIVE_TRAIN_SITE;QD=11.60;ReadPosRankSum=1.43;SOR=0.554;VQSLOD=2.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,20:51:99:488,0,799
chr5	140605030	rs650955	T	G	6703.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.59;DB;DP=145;ExcessHet=3.0103;FS=0.969;MQ=45.92;MQRankSum=-7.363e+00;QD=21.77;ReadPosRankSum=-2.273e+00;SOR=0.765;VQSLOD=-4.788e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,56:145:99:1278,0,2293
chr5	140614326	rs182253231	T	C	1888.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-01;DB;DP=140;ExcessHet=3.0103;FS=1.344;MQ=60.00;MQRankSum=0.00;QD=13.49;ReadPosRankSum=1.10;SOR=0.744;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,78:140:99:1897,0,1489
chr5	140620291	rs77176780	G	A	903.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.002e+00;DB;DP=66;ExcessHet=3.0103;FS=3.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.69;ReadPosRankSum=0.766;SOR=0.982;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,36:66:99:912,0,760
chr5	140620792	rs631696	A	G	2270.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.87;DB;DP=84;ExcessHet=3.9794;FS=4.985;MQ=59.94;MQRankSum=1.02;POSITIVE_TRAIN_SITE;QD=14.65;ReadPosRankSum=0.998;SOR=1.092;VQSLOD=2.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:42,42:84:99:1112,0,977
chr5	140626566	rs618506	A	C	9000.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.920e-01;DB;DP=233;ExcessHet=3.9794;FS=0.521;MQ=54.10;MQRankSum=-7.180e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.22;ReadPosRankSum=0.309;SOR=0.685;VQSLOD=-9.528e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:106,127:233:99:0|1:140626566_A_C:4912,0,5045:140626566
chr5	140626571	rs652104	C	A	8879.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464e+00;DB;DP=229;ExcessHet=3.9794;FS=0.521;MQ=54.09;MQRankSum=-4.880e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=20.09;ReadPosRankSum=0.504;SOR=0.747;VQSLOD=-1.477e+00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:106,123:229:99:0|1:140626566_A_C:4825,0,5037:140626566
chr5	140626627	rs618096	G	A	17584.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=260;ExcessHet=3.0103;FS=0.000;MQ=55.61;MQRankSum=-4.006e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.09;ReadPosRankSum=0.650;SOR=0.706;VQSLOD=-1.420e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,144:260:99:4048,0,2753
chr5	140683265	rs11952797	G	A	14546.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.20;DB;DP=345;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.53;ReadPosRankSum=0.939;SOR=0.664;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,343:345:99:11114,985,0
chr5	140683652	rs7724001	T	A	900.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.712;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.57;ReadPosRankSum=0.180;SOR=1.402;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:381,27,0
chr5	140710271	.	TG	T	936.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.130e-01;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.73;ReadPosRankSum=0.205;SOR=0.593;VQSLOD=6.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:22,28:50:99:945,0,738
chr5	140710705	rs2472647	G	A	6827.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=65;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=30.76;SOR=0.846;VQSLOD=3.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,65:65:99:1943,194,0
chr5	140720474	rs148082357	A	G	1171.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.810;DB;DP=133;ExcessHet=3.0103;FS=5.769;MQ=49.05;MQRankSum=-8.153e+00;QD=8.81;ReadPosRankSum=-7.130e-01;SOR=1.213;VQSLOD=-4.299e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,44:133:99:1180,0,2406
chr5	140720516	rs35592458	C	G	5282.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=156;ExcessHet=0.4576;FS=0.000;MQ=46.15;POSITIVE_TRAIN_SITE;QD=33.86;SOR=1.150;VQSLOD=-2.380e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,156:156:99:5299,468,0
chr5	140725578	rs201663850	C	G	485.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.341e+00;DB;DP=171;ExcessHet=3.0103;FS=3.267;MQ=42.67;MQRankSum=-5.298e+00;QD=2.84;ReadPosRankSum=0.341;SOR=0.755;VQSLOD=-4.744e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:132,39:171:99:494,0,3764
chr5	140750044	rs6860609	T	C	8999.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=0.818;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3366,318,0
chr5	140774288	rs4912749	T	C	18927.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MQ=52.82;QD=33.56;SOR=1.605;VQSLOD=1.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,200:200:99:6537,600,0
chr5	140783596	rs1363448	C	T	4420.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=81;ExcessHet=3.9794;FS=1.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=0.149;SOR=0.580;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,33:81:99:785,0,1208
chr5	140793007	rs4912751	A	G	6288.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590e-01;DB;DP=104;ExcessHet=3.9794;FS=6.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.12;ReadPosRankSum=0.165;SOR=0.450;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,50:104:99:1323,0,1400
chr5	140794792	rs189700811	T	C	3119.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.19;DB;DP=282;ExcessHet=3.0103;FS=1.449;MQ=55.47;MQRankSum=-2.231e+00;NEGATIVE_TRAIN_SITE;QD=11.06;ReadPosRankSum=0.486;SOR=0.592;VQSLOD=-3.222e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:163,119:282:99:3128,0,4345
chr5	140795128	rs11575963	T	C	1305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.91;DB;DP=72;ExcessHet=3.0103;FS=1.026;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=-4.060e-01;SOR=0.866;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,42:72:99:1314,0,823
chr5	140795212	rs200555070	A	T	575.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.706e+00;DB;DP=48;ExcessHet=3.0103;FS=1.206;MQ=60.00;MQRankSum=0.00;QD=11.98;ReadPosRankSum=-4.030e-01;SOR=0.445;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,23:48:99:584,0,741
chr5	140797630	rs2015825	G	T	12520.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.626e+00;DB;DP=206;ExcessHet=3.9794;FS=0.000;MQ=59.83;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=1.51;SOR=0.680;VQSLOD=6.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,94:206:99:2233,0,3186
chr5	140798639	rs17208397	G	C	5706.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.517e+00;DB;DP=186;ExcessHet=3.9794;FS=1.234;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.52;ReadPosRankSum=0.152;SOR=0.613;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,95:186:99:2582,0,2606
chr5	140807089	rs143939286	T	C	2523.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.482e+00;DB;DP=200;ExcessHet=3.0103;FS=5.203;MQ=60.00;MQRankSum=-1.010e+00;QD=12.62;ReadPosRankSum=0.659;SOR=1.069;VQSLOD=0.038;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:102,98:200:99:2532,0,2729
chr5	140812925	.	C	CCTATCTAT	75.83	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.54;SOR=2.303;VQSLOD=3.99;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr5	140856265	rs2075661	G	C	11440.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.03;DB;DP=421;ExcessHet=3.9794;FS=0.522;MQ=59.98;MQRankSum=0.960;POSITIVE_TRAIN_SITE;QD=11.65;ReadPosRankSum=0.482;SOR=0.631;VQSLOD=2.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:229,192:421:99:4604,0,5756
chr5	140857798	rs1423148	T	C	16739.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=242;ExcessHet=3.9794;FS=1.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.46;ReadPosRankSum=0.925;SOR=0.555;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:129,113:242:99:3048,0,3353
chr5	140868658	rs148910315	T	TAAG	1186.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.66;ReadPosRankSum=-3.190e-01;SOR=2.226;VQSLOD=6.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:41:123,0,41
chr5	140869003	rs1002519	T	C	2915.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.830;DB;DP=104;ExcessHet=3.9794;FS=3.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.235;SOR=0.511;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,50:104:99:1287,0,1330
chr5	140870516	rs2074912	A	G	3571.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=132;ExcessHet=3.9794;FS=4.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=2.03;SOR=0.482;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,68:132:99:1904,0,1517
chr5	140870949	rs918558	G	T	10531.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=333;ExcessHet=3.9794;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.29;ReadPosRankSum=2.46;SOR=0.738;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:152,181:333:99:4643,0,3611
chr5	140871425	rs17208425	A	G	4605.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=200;ExcessHet=3.9794;FS=0.375;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.81;ReadPosRankSum=0.323;SOR=0.727;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:103,97:200:99:2337,0,2645
chr5	140871538	rs62379205	T	C	1242.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.417;SOR=0.822;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,13:38:99:378,0,831
chr5	140907266	.	TA	T	247.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010e-01;DP=10;ExcessHet=6.9897;FS=0.000;MQ=59.51;MQRankSum=0.629;QD=7.08;ReadPosRankSum=0.00;SOR=0.818;VQSLOD=0.475;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:10:31:81,0,31
chr5	140915703	rs79832875	T	C	122.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,2:6:65:65,0,111
chr5	140940596	rs10491312	A	C	101.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.992;SOR=0.368;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:110,0,183
chr5	140952996	rs183044866	C	T	102.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.0103;FS=3.979;MQ=60.00;MQRankSum=0.00;QD=20.50;ReadPosRankSum=-5.240e-01;SOR=2.833;VQSLOD=18.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:110,0,65
chr5	140953931	rs45515193	C	T	250.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.81;ReadPosRankSum=0.431;SOR=2.093;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,7:9:48:259,0,48
chr5	140954954	rs6879677	A	G	713.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=32.45;ReadPosRankSum=-1.800e-01;SOR=1.179;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:264,21,0
chr5	140955777	rs2302103	C	T	5177.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.432;DB;DP=71;ExcessHet=3.0103;FS=4.386;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=1.43;SOR=1.011;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2007,212,0
chr5	140998351	rs2074913	G	A	1863.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.220e-01;DB;DP=189;ExcessHet=3.0103;FS=3.323;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.86;ReadPosRankSum=-6.620e-01;SOR=0.938;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,82:189:99:1872,0,2674
chr5	141005687	rs2547547	A	G	6677.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.84;DB;DP=309;ExcessHet=3.9794;FS=2.452;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.90;ReadPosRankSum=0.096;SOR=0.560;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:156,153:309:99:3909,0,3746
chr5	141014494	rs2530223	T	C	5820.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=72;ExcessHet=3.0103;FS=1.450;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=1.59;SOR=0.583;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2325,216,0
chr5	141016276	rs32954	T	C	26053.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=192;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.19;SOR=0.790;VQSLOD=18.51;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,192:192:99:1|1:141016276_T_C:8509,590,0:141016276
chr5	141016288	rs1421896	T	G	22209.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.48;DB;DP=186;ExcessHet=3.0103;FS=0.899;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=-3.210e-01;SOR=0.827;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,186:186:99:1|1:141016276_T_C:8403,575,0:141016276
chr5	141019110	rs14251	C	A	10380.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.139e+00;DB;DP=170;ExcessHet=3.9794;FS=7.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=-4.480e-01;SOR=0.373;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,103:170:99:2679,0,1714
chr5	141019324	rs73285814	G	A	583.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=10;ExcessHet=6.9897;FS=1.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.63;ReadPosRankSum=-2.040e-01;SOR=1.292;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:228,0,130
chr5	141019569	rs17855844	G	C	3141.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.420e+00;DB;DP=89;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.45;ReadPosRankSum=0.381;SOR=0.671;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,50:89:99:1636,0,1247
chr5	141019830	rs11742646	C	G	7747.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.529e+00;DB;DP=313;ExcessHet=3.9794;FS=2.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.24;ReadPosRankSum=1.39;SOR=0.891;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:155,158:313:99:4066,0,4079
chr5	141020100	rs41098	C	A	2958.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.199;DB;DP=58;ExcessHet=1.5490;FS=2.670;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.12;ReadPosRankSum=1.31;SOR=0.475;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:707,0,846
chr5	141022848	rs702379	T	C	1178.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.348;DB;DP=37;ExcessHet=3.9794;FS=0.909;MQ=59.82;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.10;ReadPosRankSum=0.757;SOR=0.861;VQSLOD=6.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,23:37:99:649,0,334
chr5	141023723	rs468920	T	C	1348.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=37;ExcessHet=3.9794;FS=3.076;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.12;ReadPosRankSum=0.319;SOR=1.705;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,19:37:99:0|1:141023723_T_C:779,0,1246:141023723
chr5	141023733	rs467478	G	A	1421.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e+00;DB;DP=37;ExcessHet=3.9794;FS=3.274;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.90;ReadPosRankSum=0.244;SOR=1.848;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,20:37:99:0|1:141023723_T_C:782,0,1210:141023723
chr5	141024048	rs469522	A	G	4752.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.813e+00;DB;DP=175;ExcessHet=3.9794;FS=8.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=1.15;SOR=1.069;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,84:175:99:2417,0,2693
chr5	141024136	rs469074	T	G	4146.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.268e+00;DB;DP=183;ExcessHet=3.9794;FS=6.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=0.131;SOR=0.805;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,90:183:99:2287,0,2390
chr5	141024890	rs112898157	T	TAGC	862.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.810e-01;DB;DP=14;ExcessHet=1.5490;FS=2.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.76;ReadPosRankSum=1.45;SOR=1.429;VQSLOD=7.10;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:99:183,0,460
chr5	141025162	rs456998	G	T	4550.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.990e+00;DB;DP=46;ExcessHet=3.0103;FS=4.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.71;ReadPosRankSum=1.36;SOR=1.126;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1631,137,0
chr5	141025767	rs74910284	G	A	964.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.079e+00;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.76;ReadPosRankSum=0.938;SOR=0.781;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,43:82:99:973,0,1065
chr5	141025929	rs7711960	A	G	1732.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DB;DP=71;ExcessHet=3.9794;FS=0.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.930;SOR=0.786;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,34:71:99:792,0,893
chr5	141026884	rs251177	T	C	1757.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.710e-01;DB;DP=47;ExcessHet=1.5490;FS=1.908;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=-1.507e+00;SOR=0.548;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:522,0,740
chr5	141027399	rs468968	T	C	7046.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.355;DB;DP=87;ExcessHet=3.0103;FS=1.350;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.18;ReadPosRankSum=-4.480e-01;SOR=0.866;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3283,261,0
chr5	141027400	rs468222	G	C	4002.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.500e-02;DB;DP=87;ExcessHet=1.5490;FS=1.403;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.221;SOR=0.565;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,42:87:99:1005,0,1123
chr5	141027462	rs3763121	G	A	2645.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.133e+00;DB;DP=114;ExcessHet=3.9794;FS=4.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=9.000e-03;SOR=1.006;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,64:114:99:1707,0,1403
chr5	141030453	rs67641160	C	G	444.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.211e+00;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.39;ReadPosRankSum=-3.670e-01;SOR=0.714;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,18:39:99:453,0,627
chr5	141030846	rs73285828	G	C	970.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.810e-01;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.13;ReadPosRankSum=-8.330e-01;SOR=0.598;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,40:80:99:979,0,991
chr5	141031107	rs17097413	T	C	99.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-2.720e-01;SOR=0.368;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:108,0,178
chr5	141034123	rs6580194	T	A	2999.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.88;SOR=2.915;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:794,69,0
chr5	141034245	rs12654225	A	C	148.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.74;ReadPosRankSum=-8.420e-01;SOR=3.258;VQSLOD=17.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:157,0,65
chr5	141034723	rs149608722	T	TCA	142.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=57.47;MQRankSum=0.792;QD=20.33;ReadPosRankSum=1.01;SOR=0.941;VQSLOD=0.625;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,4:7:99:151,0,114
chr5	141034749	rs71931667	TAC	T,TACACACACACACAC	1243.12	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.200;DB;DP=12;ExcessHet=3.0103;FS=4.002;MQ=59.19;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.02;ReadPosRankSum=0.906;SOR=2.646;VQSLOD=6.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,6,6:12:99:468,252,260,222,0,224
chr5	141034792	rs10537938	T	TAC,TACACACACAC	2249.57	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.10;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=59.39;MQRankSum=0.873;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-1.104e+00;SOR=0.824;VQSLOD=1.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:4,17,12:33:99:983,513,556,373,0,691
chr5	141035174	rs79464052	G	C	2940.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=113;ExcessHet=3.9794;FS=0.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.79;SOR=0.752;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,62:113:99:1667,0,1265
chr5	141035248	rs2306340	A	G	2062.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.087;DB;DP=151;ExcessHet=3.0103;FS=1.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=-1.556e+00;SOR=0.615;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,81:151:99:2071,0,1742
chr5	141035374	rs7715559	G	A	2626.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.540;DB;DP=97;ExcessHet=3.9794;FS=3.024;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=2.23;SOR=0.896;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,44:97:99:1165,0,1472
chr5	141035955	rs2306339	G	A	3058.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=91;ExcessHet=3.9794;FS=1.728;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.77;ReadPosRankSum=0.791;SOR=0.836;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,56:91:99:1690,0,1007
chr5	141036337	rs7703648	A	G	7917.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.02;DB;DP=139;ExcessHet=3.9794;FS=0.401;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.73;ReadPosRankSum=0.943;SOR=0.741;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,53:139:99:1530,0,2153
chr5	141036676	rs7704263	A	G	678.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.29;ReadPosRankSum=0.949;SOR=1.802;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:145,0,129
chr5	141037646	rs34798770	G	A	310.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.05;ReadPosRankSum=-3.190e-01;SOR=1.802;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:26:78,0,26
chr5	141041148	rs6891143	G	A	1563.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.492e+00;DB;DP=44;ExcessHet=3.9794;FS=2.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.024;SOR=1.028;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,21:44:99:577,0,691
chr5	141041435	rs3749759	G	A	5072.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=0.870;VQSLOD=19.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1735,140,0
chr5	141044472	rs2306337	A	G	794.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.491;DB;DP=36;ExcessHet=3.9794;FS=26.864;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.22;ReadPosRankSum=-1.012e+00;SOR=2.809;VQSLOD=9.15;culprit=FS	GT:AD:DP:GQ:PL	0/1:21,15:36:99:459,0,576
chr5	141049407	rs3763120	G	A	8842.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.317e+00;DB;DP=105;ExcessHet=3.0103;FS=1.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.41;ReadPosRankSum=-4.850e-01;SOR=0.625;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3512,315,0
chr5	141049656	rs73285857	A	G	2521.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.120e-01;DB;DP=102;ExcessHet=3.9794;FS=5.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.48;ReadPosRankSum=1.01;SOR=0.408;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,51:102:99:1327,0,1367
chr5	141049907	rs57197637	C	T	306.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.120e-01;DB;DP=9;ExcessHet=3.9794;FS=12.316;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.11;ReadPosRankSum=0.241;SOR=0.964;VQSLOD=16.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,6:9:91:205,0,91
chr5	141052416	rs1057371	G	T	2464.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.796e+00;DB;DP=74;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=1.91;SOR=0.718;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,39:74:99:956,0,930
chr5	141052870	rs440279	G	C	3980.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=59.73;POSITIVE_TRAIN_SITE;QD=28.12;SOR=0.713;VQSLOD=3.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1281,93,0
chr5	141053526	rs10712701	CT	C	209.53	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=9;ExcessHet=0.7918;FS=9.031;MQ=59.61;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=-1.800e-01;SOR=5.421;VQSLOD=0.560;culprit=FS	GT:AD:DP:GQ:PL	1/1:1,5:9:5:112,5,0
chr5	141058794	rs10068000	T	A	707.90	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.58;SOR=3.716;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:387,30,0
chr5	141059649	rs417503	A	G	12334.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=139;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.63;ReadPosRankSum=0.765;SOR=0.816;VQSLOD=6.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,139:139:99:4321,416,0
chr5	141059868	rs11167756	T	C	17164.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.13;DB;DP=207;ExcessHet=3.0103;FS=0.683;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.97;ReadPosRankSum=-7.940e-01;SOR=0.578;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,207:207:99:6702,620,0
chr5	141235896	rs11745262	G	A	598.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=38;ExcessHet=3.0103;FS=2.944;MQ=59.41;MQRankSum=-1.405e+00;POSITIVE_TRAIN_SITE;QD=15.74;ReadPosRankSum=0.733;SOR=0.747;VQSLOD=0.013;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,23:38:99:607,0,300
chr5	141235916	rs145694332	TGGGAGGTTAGACAAGGGCCC	T	1656.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=59.63;POSITIVE_TRAIN_SITE;QD=25.10;SOR=3.145;VQSLOD=5.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,14:14:45:637,45,0
chr5	141242633	rs14359	C	G	207.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.381;SOR=1.426;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:136,0,28
chr5	141243646	rs3797054	A	G	3087.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.297e+00;DB;DP=126;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.15;ReadPosRankSum=0.905;SOR=0.668;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,63:126:99:1706,0,1797
chr5	141244244	.	G	C	2137.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.550e-01;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.19;ReadPosRankSum=-1.624e+00;SOR=0.743;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,70:132:99:2146,0,1874
chr5	141247181	.	TA	T	86.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DP=46;ExcessHet=3.9794;FS=8.545;MQ=60.00;MQRankSum=0.00;QD=1.02;ReadPosRankSum=1.59;SOR=0.924;VQSLOD=2.87;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,7:46:64:64,0,765
chr5	141247208	rs145421427	C	T	406.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.532e+00;DB;DP=39;ExcessHet=3.0103;FS=1.243;MQ=60.00;MQRankSum=0.00;QD=10.42;ReadPosRankSum=1.25;SOR=0.668;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,17:39:99:415,0,664
chr5	141303481	.	G	A	1838.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DP=172;ExcessHet=3.0103;FS=1.190;MQ=60.00;MQRankSum=0.00;QD=10.69;ReadPosRankSum=-1.184e+00;SOR=0.810;VQSLOD=21.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,80:172:99:1847,0,2181
chr5	141305414	rs5871789	C	CA	621.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.21;ReadPosRankSum=0.992;SOR=1.179;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,5:8:99:0|1:141305414_C_CA:179,0,126:141305414
chr5	141305438	rs1863964	T	A	247.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.71;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,2:3:68:0|1:141305414_C_CA:81,0,68:141305414
chr5	141309824	rs351260	G	A	3328.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.538;DB;DP=59;ExcessHet=1.5490;FS=3.440;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.63;ReadPosRankSum=-1.084e+00;SOR=1.025;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1973,177,0
chr5	141324955	rs5871792	C	CCTGCTGCTG	11228.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.559;DB;DP=132;ExcessHet=3.9794;FS=1.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.94;ReadPosRankSum=0.848;SOR=0.818;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:58,74:132:99:3014,0,3158
chr5	141325249	rs105633	T	C	22920.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=253;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=0.982;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,253:253:99:7458,759,0
chr5	141334921	rs2434322	C	T	5648.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.470e-01;DB;DP=253;ExcessHet=3.9794;FS=5.923;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=0.138;SOR=0.419;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:126,127:253:99:3022,0,3366
chr5	141335241	rs164073	A	G	18177.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=217;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.17;ReadPosRankSum=-1.484e+00;SOR=0.677;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:121,96:217:99:2479,0,3005
chr5	141335284	rs164074	G	A	13722.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.027;DB;DP=217;ExcessHet=3.9794;FS=1.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=-1.220e-01;SOR=0.789;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,99:217:99:2566,0,3157
chr5	141335498	rs164515	C	T	3289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.877;DB;DP=295;ExcessHet=3.0103;FS=0.426;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.15;ReadPosRankSum=-8.310e-01;SOR=0.741;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:162,133:295:99:3298,0,4037
chr5	141336264	rs164075	G	T	9173.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.027e+00;DB;DP=129;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=-5.780e-01;SOR=0.661;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,68:129:99:1832,0,1656
chr5	141337126	rs164076	C	T	12092.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.935e+00;DB;DP=357;ExcessHet=6.9897;FS=0.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.93;ReadPosRankSum=0.435;SOR=0.728;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:193,164:357:99:3781,0,5158
chr5	141337225	rs164077	A	G	16285.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680e-01;DB;DP=296;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=0.294;SOR=0.731;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:175,121:296:99:3076,0,4687
chr5	141353331	rs62380045	G	T	153.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-3.490e-01;SOR=0.551;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:162,0,220
chr5	141354220	rs187542	G	C	1341.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.55;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.73;ReadPosRankSum=0.613;SOR=0.793;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:338,30,0
chr5	141357628	rs192243	G	A	485.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.751;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=0.876;SOR=1.609;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr5	141357719	rs66768569	TTGTA	T	3888.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.700e-02;DB;DP=32;ExcessHet=3.0103;FS=2.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=-1.378e+00;SOR=0.307;VQSLOD=6.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1434,96,0
chr5	141359525	rs365916	A	G	2851.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.15;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.68;ReadPosRankSum=-3.720e-01;SOR=3.202;VQSLOD=19.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:751,51,0
chr5	141364511	rs252099	A	G	9773.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.136e+00;DB;DP=107;ExcessHet=3.0103;FS=0.646;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.42;ReadPosRankSum=-2.270e-01;SOR=0.735;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3252,319,0
chr5	141364637	rs252100	C	T	4451.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.846e+00;DB;DP=39;ExcessHet=3.0103;FS=1.983;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.50;ReadPosRankSum=-1.334e+00;SOR=1.041;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1335,117,0
chr5	141364713	rs34181518	AAC	A	1286.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.560;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.87;ReadPosRankSum=1.18;SOR=2.554;VQSLOD=6.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,10:10:30:445,30,0
chr5	141364752	rs252101	G	A	733.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.89;ReadPosRankSum=1.37;SOR=2.833;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr5	141367202	rs374840	G	T	5688.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.606e+00;DB;DP=54;ExcessHet=3.0103;FS=0.753;MQ=59.94;MQRankSum=-1.059e+00;POSITIVE_TRAIN_SITE;QD=34.69;ReadPosRankSum=0.947;SOR=0.595;VQSLOD=1.59;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,54:54:99:1|1:141367202_G_T:2353,162,0:141367202
chr5	141367203	rs424485	A	T	5688.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.775;DB;DP=54;ExcessHet=3.0103;FS=0.758;MQ=59.94;MQRankSum=-1.081e+00;POSITIVE_TRAIN_SITE;QD=33.81;ReadPosRankSum=1.21;SOR=0.570;VQSLOD=1.06;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,54:54:99:1|1:141367202_G_T:2353,162,0:141367202
chr5	141371557	rs143763915	CTTT	C	3089.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.960;DB;DP=47;ExcessHet=3.0103;FS=1.697;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.95;ReadPosRankSum=1.15;SOR=0.495;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,43:47:99:1756,139,0
chr5	141371596	rs6580210	C	T	380.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.906e+00;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=59.48;MQRankSum=-1.071e+00;POSITIVE_TRAIN_SITE;QD=11.88;ReadPosRankSum=1.24;SOR=0.776;VQSLOD=0.352;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,14:32:99:389,0,556
chr5	141381850	rs252119	T	C	449.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.56;ReadPosRankSum=1.28;SOR=2.833;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:134,9,0
chr5	141382472	rs252115	A	G	569.42	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.341;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=0.524;SOR=3.258;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr5	141382584	rs252114	T	C	3673.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.527e+00;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.40;ReadPosRankSum=0.479;SOR=0.539;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1437,111,0
chr5	141383028	rs252113	A	G	779.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.940e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.19;ReadPosRankSum=-2.660e-01;SOR=3.014;VQSLOD=19.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:289,21,0
chr5	141387158	rs351251	G	C	1130.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.31;ReadPosRankSum=2.03;SOR=1.666;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:307,24,0
chr5	141387336	rs2232196	G	C	1004.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.063e+00;DB;DP=82;ExcessHet=3.0103;FS=0.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.25;ReadPosRankSum=0.728;SOR=0.522;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,41:82:99:1013,0,1117
chr5	141387520	rs2232195	A	G	210.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.480;DB;DP=23;ExcessHet=3.0103;FS=2.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.14;ReadPosRankSum=1.24;SOR=1.828;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,7:23:99:219,0,499
chr5	141488364	rs3761759	G	C	239.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.334;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.13;ReadPosRankSum=1.24;SOR=0.593;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:170,15,0
chr5	141488792	rs9324865	T	C	492.51	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.36;ReadPosRankSum=0.524;SOR=0.507;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:87,9,0
chr5	141488807	rs55865281	G	A	142.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=-1.036e+00;SOR=1.329;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:90,9,0
chr5	141515564	rs7733850	C	T	1793.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.695e+00;DB;DP=22;ExcessHet=3.9794;FS=5.084;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=2.64;SOR=2.179;VQSLOD=20.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:887,66,0
chr5	141520013	.	CA	C	363.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.316;DP=23;ExcessHet=6.9897;FS=0.000;MQ=59.60;MQRankSum=0.00;QD=6.07;ReadPosRankSum=0.906;SOR=0.850;VQSLOD=5.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,11:23:99:185,0,180
chr5	141533062	rs449454	A	G	7160.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.590e+00;DB;DP=92;ExcessHet=3.9794;FS=2.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.34;ReadPosRankSum=2.19;SOR=0.569;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3048,276,0
chr5	141693593	rs10040443	C	T	1461.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.00;ReadPosRankSum=0.302;SOR=1.473;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:402,30,0
chr5	142150202	rs2276993	G	A	376.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.10;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.67;ReadPosRankSum=-7.060e-01;SOR=0.551;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:60:60,0,170
chr5	142393562	rs3822397	G	A	4234.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.100e-02;DB;DP=51;ExcessHet=3.0103;FS=4.642;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=0.170;SOR=1.030;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,50:51:99:1466,112,0
chr5	142416741	rs192194	T	C	3473.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.22;DB;DP=57;ExcessHet=3.9794;FS=1.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.93;ReadPosRankSum=0.476;SOR=0.521;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,54:57:82:1869,82,0
chr5	142421287	.	GAA	G,GA	1106.31	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.787;DP=39;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=-4.940e-01;POSITIVE_TRAIN_SITE;QD=9.62;ReadPosRankSum=0.333;SOR=0.804;VQSLOD=1.97;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:5,16,14:39:99:655,167,318,272,0,269
chr5	142421415	rs2270068	T	G	13615.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=126;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.12;SOR=0.711;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,126:126:99:3620,377,0
chr5	142513686	rs246607	A	G	1560.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.562;DB;DP=66;ExcessHet=3.9794;FS=0.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=1.13;SOR=0.571;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,31:66:99:746,0,1005
chr5	142593652	rs258819	C	T	2015.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.84;SOR=0.808;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:666,51,0
chr5	142601811	rs72399054	TACAC	T	1362.70	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.031;DB;DP=18;ExcessHet=6.9897;FS=1.280;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.96;ReadPosRankSum=1.01;SOR=1.010;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,11:18:99:386,0,282
chr5	143059433	rs2042253	T	C	933.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=48;ExcessHet=3.9794;FS=6.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.24;ReadPosRankSum=0.056;SOR=1.412;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,18:48:99:405,0,805
chr5	143200053	rs161557	C	T	2085.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.810e-01;DB;DP=74;ExcessHet=6.9897;FS=1.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.73;ReadPosRankSum=-9.950e-01;SOR=0.815;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,25:74:99:542,0,1260
chr5	145176221	rs338898	C	T	2741.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.70;SOR=2.584;VQSLOD=21.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:850,75,0
chr5	145198805	rs624380	T	C	4084.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=42;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=1.769;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1357,126,0
chr5	145199430	rs11293460	AG	A	7772.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.73;SOR=2.833;VQSLOD=6.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,56:56:99:2185,169,0
chr5	145199686	rs201204217	GTTTTT	G	2596.37	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=37.22;SOR=6.302;VQSLOD=6.14;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,17:17:51:766,51,0
chr5	145202946	rs189294	G	A	313.11	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.96;SOR=4.407;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr5	145214538	rs12658784	G	A	883.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.82;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=0.00;SOR=0.724;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:28:28,0,139
chr5	145239119	rs432793	G	C	720	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.92;SOR=5.892;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	145245962	rs17423559	C	G	314.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=0.00;SOR=1.112;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:323,0,163
chr5	145252574	rs10037373	C	T	3222.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.54;DB;DP=34;ExcessHet=3.9794;FS=5.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.23;ReadPosRankSum=1.47;SOR=1.482;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,11:34:99:312,0,637
chr5	145393364	rs758037	C	T	8332.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.10;DB;DP=136;ExcessHet=3.9794;FS=4.241;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.04;ReadPosRankSum=-6.400e-02;SOR=0.442;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,136:136:99:4380,408,0
chr5	145439647	rs2962525	T	C	33705.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=351;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=30.37;SOR=0.775;VQSLOD=3.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,351:351:99:10789,1052,0
chr5	145442203	rs1056149	G	C	13297.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.915;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.41;ReadPosRankSum=0.535;SOR=0.703;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4554,402,0
chr5	145515379	rs2963919	C	T	1485.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.73;SOR=7.328;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:367,27,0
chr5	145522912	rs2962504	A	G	8237.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=1.774;VQSLOD=20.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2511,248,0
chr5	145533123	rs57378167	G	GA	2052.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.01;SOR=4.066;VQSLOD=6.11;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,16:16:48:570,48,0
chr5	145539259	rs2939536	G	C	881.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=6.091;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:266,18,0
chr5	145552542	rs2962511	T	C	410.22	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.35;SOR=1.609;VQSLOD=21.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	145568753	rs58327303	T	TG	5153.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.38;SOR=0.859;VQSLOD=3.75;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:145568753_T_TG:1170,78,0:145568753
chr5	145568754	rs56358704	T	A	5153.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.96;SOR=0.859;VQSLOD=18.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:145568753_T_TG:1170,78,0:145568753
chr5	145647151	rs2963925	C	T	313.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.500e-02;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.72;ReadPosRankSum=0.00;SOR=0.567;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:60:60,0,184
chr5	145665354	.	CT	C	145.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DP=24;ExcessHet=3.9794;FS=2.122;MQ=60.00;MQRankSum=0.00;QD=3.46;ReadPosRankSum=-1.890e-01;SOR=0.242;VQSLOD=5.34;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,9:24:99:147,0,320
chr5	145838440	rs11743333	G	A	1675.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.575e+00;DB;DP=59;ExcessHet=3.9794;FS=6.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-2.500e-02;SOR=0.321;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,37:59:99:852,0,541
chr5	145850459	rs11463725	G	GT	218.18	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=-1.645e+00;SOR=0.223;VQSLOD=6.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:47:78,0,47
chr5	145851163	rs141675712	AT	A	260.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.400;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.01;ReadPosRankSum=2.21;SOR=0.852;VQSLOD=5.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,5:14:81:81,0,164
chr5	145890028	rs4705103	A	G	2482.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.834e+00;DB;DP=54;ExcessHet=6.9897;FS=1.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.08;ReadPosRankSum=1.47;SOR=0.560;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,35:54:99:823,0,513
chr5	145969961	.	GTT	G	143.24	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.930;DP=8;ExcessHet=6.9897;FS=2.965;MQ=59.75;MQRankSum=0.00;QD=5.12;ReadPosRankSum=0.110;SOR=1.802;VQSLOD=4.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,2:8:45:45,0,167
chr5	146029846	rs6580433	G	A	107.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.91;SOR=2.833;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr5	146029906	rs6580434	C	T	331.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.73;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=1.04;SOR=0.602;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:214,15,0
chr5	146030055	rs6866598	C	T	3148.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.665e+00;DB;DP=35;ExcessHet=3.9794;FS=5.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=0.170;SOR=1.249;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1228,105,0
chr5	146030195	rs146742970	A	T	1208.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.370e-01;DB;DP=105;ExcessHet=3.0103;FS=6.138;MQ=60.00;MQRankSum=0.00;QD=11.51;ReadPosRankSum=0.266;SOR=0.789;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,50:105:99:1217,0,1434
chr5	146077526	rs6879694	C	T	3515.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.349e+00;DB;DP=79;ExcessHet=1.5490;FS=0.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.11;ReadPosRankSum=0.034;SOR=0.610;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,41:79:99:1005,0,1017
chr5	146414469	rs2054528	G	A	1374.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.017e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.44;ReadPosRankSum=-1.671e+00;SOR=0.957;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:513,39,0
chr5	146434047	rs5872003	TA	T	1069.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.54;ReadPosRankSum=2.41;SOR=0.456;VQSLOD=6.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:361,36,0
chr5	146434060	rs2400241	C	T	1823.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.34;DB;DP=17;ExcessHet=3.9794;FS=2.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.09;ReadPosRankSum=2.24;SOR=0.341;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:615,51,0
chr5	146435163	rs11958187	G	A	668.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.50;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.15;ReadPosRankSum=0.507;SOR=0.919;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:442,42,0
chr5	146435580	rs1480153	A	G	529.70	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.43;ReadPosRankSum=0.210;SOR=3.912;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:253,18,0
chr5	146619206	rs4705132	G	C	5155.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=0.924;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1482,150,0
chr5	146657584	rs6580458	T	C	945.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.980e-01;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.65;ReadPosRankSum=-3.860e-01;SOR=1.609;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:230,0,125
chr5	146657838	rs6580459	G	A	3182.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.640e-01;DB;DP=58;ExcessHet=3.9794;FS=0.658;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.51;ReadPosRankSum=1.35;SOR=0.825;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,34:58:99:836,0,692
chr5	146659014	rs78417445	T	G	1162.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.525;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.75;ReadPosRankSum=0.625;SOR=0.823;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,41:62:99:1171,0,520
chr5	146722890	rs6884181	C	T	378.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.320e-01;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.54;ReadPosRankSum=0.547;SOR=0.512;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:134,0,197
chr5	146728147	rs62377744	T	C	360.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.604;DB;DP=26;ExcessHet=3.0103;FS=4.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=1.26;SOR=1.765;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,12:26:99:0|1:146728147_T_C:369,0,389:146728147
chr5	146728149	rs10072514	C	G	3205.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.81;SOR=2.223;VQSLOD=21.42;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:146728147_T_C:1030,78,0:146728147
chr5	146728490	rs918797	A	G	58.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.75;ReadPosRankSum=-4.310e-01;SOR=1.179;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,77
chr5	146753004	rs4235731	T	C	2499.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.154e+00;DB;DP=57;ExcessHet=3.9794;FS=5.455;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.86;ReadPosRankSum=0.978;SOR=0.337;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,33:57:99:849,0,686
chr5	146775377	rs2288807	G	C	2058.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.312e+00;DB;DP=37;ExcessHet=1.5490;FS=6.549;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.94;ReadPosRankSum=0.412;SOR=0.206;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:568,0,516
chr5	146775475	rs2288806	T	G	716.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.88;DB;DP=10;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.17;ReadPosRankSum=0.906;SOR=2.400;VQSLOD=22.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:180,0,160
chr5	146776998	rs6877045	T	C	76.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.06;SOR=2.303;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:146776998_T_C:90,6,0:146776998
chr5	146777007	rs2304046	G	T	385.49	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.96;SOR=4.804;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:146776998_T_C:90,6,0:146776998
chr5	146777020	rs6877057	T	C	59.48	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.74;SOR=2.303;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:73,6,0
chr5	146777188	rs2304045	A	G	3245.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.676e+00;DB;DP=77;ExcessHet=1.5490;FS=2.319;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.16;ReadPosRankSum=0.711;SOR=0.484;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,33:77:99:664,0,1076
chr5	146777447	rs74828553	A	ATAGAAAGAG	2880.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.810e-01;DB;DP=33;ExcessHet=1.5490;FS=1.061;MQ=59.88;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.11;ReadPosRankSum=-2.063e+00;SOR=0.891;VQSLOD=6.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,15:33:99:537,0,1050
chr5	146778867	rs17550470	T	C	178.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=2.04;SOR=0.693;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:187,0,184
chr5	146780273	rs10515587	G	A	1011.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.034;DB;DP=84;ExcessHet=3.0103;FS=4.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.373;SOR=1.163;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,38:84:99:1020,0,1221
chr5	146781440	rs3816013	A	C	1403.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.52;ReadPosRankSum=-7.970e-01;SOR=0.760;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:387,0,129
chr5	146971253	rs7449194	C	T	14358.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.26;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.68;ReadPosRankSum=0.839;SOR=1.579;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3885,395,0
chr5	146981164	rs111740872	TCAAAACAAAACAAAA	T	824.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.66;SOR=3.160;VQSLOD=6.16;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:211,18,0
chr5	146981601	rs4705041	G	A	5097.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.34;SOR=2.935;VQSLOD=21.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1469,129,0
chr5	146991452	rs10039022	T	C	268.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.83;SOR=4.174;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	147000359	rs71580442	G	A	1624.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DB;DP=49;ExcessHet=3.9794;FS=20.182;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=0.900;SOR=2.223;VQSLOD=11.21;culprit=FS	GT:AD:DP:GQ:PL	0/1:28,21:49:99:542,0,665
chr5	147027930	rs7735403	A	G	6510.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.46;DB;DP=69;ExcessHet=3.9794;FS=2.506;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.21;ReadPosRankSum=0.492;SOR=0.844;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,34:69:99:893,0,762
chr5	147030267	rs2053050	T	G	69	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=2.303;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	147040101	rs139209631	A	AAAAC	5864.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.080e-01;DB;DP=53;ExcessHet=3.9794;FS=2.441;MQ=60.00;MQRankSum=0.00;QD=26.66;ReadPosRankSum=-5.190e-01;SOR=0.874;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,21:53:99:785,0,1757
chr5	147041185	rs9325048	G	A	974.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.410e-01;DB;DP=14;ExcessHet=3.9794;FS=6.138;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.67;ReadPosRankSum=0.393;SOR=2.501;VQSLOD=1.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:174,0,183
chr5	147162227	rs115937415	G	A	186.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.146;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.16;ReadPosRankSum=-1.564e+00;SOR=0.566;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,9:26:99:195,0,429
chr5	147261812	rs3843496	T	C	617.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.74;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=0.381;SOR=1.508;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:532,36,0
chr5	147276404	rs2304067	T	C	195.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.27;ReadPosRankSum=1.72;SOR=0.693;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:65:102,0,65
chr5	147281308	rs11956228	C	T	788.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.540e-01;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.65;ReadPosRankSum=-4.020e-01;SOR=0.610;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,30:74:99:797,0,1266
chr5	147285713	rs7722416	A	C	256.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.07;ReadPosRankSum=0.524;SOR=0.593;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:57:57,0,106
chr5	147286013	rs7722926	A	T	2732.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=100;ExcessHet=3.9794;FS=0.509;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.765;SOR=0.766;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,50:100:99:1274,0,1237
chr5	147286054	rs2250145	G	A	3910.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.020e-01;DB;DP=104;ExcessHet=6.9897;FS=3.031;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=1.16;SOR=0.873;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,49:104:99:1169,0,1274
chr5	147286206	.	A	G	281.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.890e-01;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.04;ReadPosRankSum=-1.412e+00;SOR=0.883;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:290,0,482
chr5	147444785	rs2287772	A	G	586.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.619;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.48;ReadPosRankSum=-5.660e-01;SOR=0.495;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:389,27,0
chr5	147444989	rs9325061	G	A	6788.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.337e+00;DB;DP=56;ExcessHet=3.0103;FS=3.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.14;ReadPosRankSum=-9.170e-01;SOR=0.450;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,56:56:99:1|1:147444989_G_A:2429,172,0:147444989
chr5	147445012	rs2287771	T	C	520.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.790e-01;DB;DP=51;ExcessHet=3.0103;FS=1.101;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.20;ReadPosRankSum=0.622;SOR=0.965;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,25:51:99:529,0,589
chr5	147445023	rs1609851	C	G	5758.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.693e+00;DB;DP=43;ExcessHet=3.0103;FS=3.996;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.56;ReadPosRankSum=-5.630e-01;SOR=0.402;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,43:43:99:1|1:147444989_G_A:2017,135,0:147444989
chr5	147445108	rs3036741	TCACACA	T	1375.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.500e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.56;ReadPosRankSum=-1.284e+00;SOR=0.877;VQSLOD=5.44;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:147445108_TCACACA_T:360,24,0:147445108
chr5	147445124	rs1007979	A	G	1375.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.83;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.56;ReadPosRankSum=-1.530e+00;SOR=0.877;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,8:8:24:1|1:147445108_TCACACA_T:360,24,0:147445108
chr5	147449855	rs1423001	A	G	3204.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.22;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.52;ReadPosRankSum=-9.070e-01;SOR=0.690;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1197,102,0
chr5	147450085	rs3752676	C	A	3354.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.128;DB;DP=28;ExcessHet=3.0103;FS=0.819;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=0.345;SOR=0.869;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:959,84,0
chr5	147450247	rs10073775	A	G	639.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.940e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.98;ReadPosRankSum=0.816;SOR=2.531;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:126,9,0
chr5	147451416	rs1156807	A	G	415.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.98;SOR=4.804;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:173,12,0
chr5	147468234	rs7711953	C	G	1294.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.630e-01;DB;DP=51;ExcessHet=3.9794;FS=3.894;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=1.67;SOR=0.403;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,32:51:99:830,0,471
chr5	147468398	rs11417964	T	TA	1687.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.854;DB;DP=30;ExcessHet=3.0103;FS=5.080;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.95;ReadPosRankSum=0.277;SOR=1.428;VQSLOD=6.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:3,27:30:7:624,7,0
chr5	147468614	rs10038561	A	G	8603.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.43;DB;DP=84;ExcessHet=3.0103;FS=0.555;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.30;ReadPosRankSum=1.27;SOR=0.619;VQSLOD=6.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2878,252,0
chr5	147468971	rs4529181	G	C	3998.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.144e+00;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.85;ReadPosRankSum=-3.710e-01;SOR=0.674;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2119,186,0
chr5	147470592	rs72660254	G	C	318.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.22;ReadPosRankSum=-8.030e-01;SOR=1.112;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:327,0,178
chr5	147475386	rs6892205	A	G	2194.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.390e-01;DB;DP=65;ExcessHet=1.5490;FS=1.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=-5.060e-01;SOR=0.944;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,27:65:99:632,0,980
chr5	147475488	rs11958432	A	G	1254.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;DB;DP=65;ExcessHet=3.9794;FS=0.702;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.00;ReadPosRankSum=0.603;SOR=0.615;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:652,0,875
chr5	147475513	rs76839946	G	GT	1251.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=56;ExcessHet=3.9794;FS=2.687;MQ=60.00;MQRankSum=0.00;QD=12.27;ReadPosRankSum=0.965;SOR=1.003;VQSLOD=5.76;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:34,22:56:99:690,0,1137
chr5	147475590	rs11948406	G	A	805.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.11;DB;DP=18;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.328;SOR=0.941;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,8:18:99:0|1:147475590_G_A:286,0,385:147475590
chr5	147475609	rs62388363	A	G	711.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=17;ExcessHet=3.9794;FS=6.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=1.13;SOR=3.180;VQSLOD=16.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,7:17:99:0|1:147475590_G_A:264,0,388:147475590
chr5	147475627	rs62388364	G	A	1244.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.82;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.11;ReadPosRankSum=1.48;SOR=2.362;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:518,39,0
chr5	147477260	rs11168019	A	G	142.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.31;ReadPosRankSum=1.38;SOR=0.941;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:77,0,33
chr5	147477351	rs140268040	T	TTTTAA	994.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.445;DB;DP=28;ExcessHet=3.9794;FS=4.469;MQ=59.92;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=0.720;SOR=1.908;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:16,12:28:99:498,0,1031
chr5	147477551	rs34482796	C	T	3098.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.300e-02;DB;DP=114;ExcessHet=3.9794;FS=0.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=0.363;SOR=0.657;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,67:114:99:1773,0,1108
chr5	147478654	rs11405253	G	GT	1688.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=26;ExcessHet=6.9897;FS=3.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.23;ReadPosRankSum=0.333;SOR=1.127;VQSLOD=7.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,12:26:99:379,0,418
chr5	147478785	rs1422991	C	T	1070.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.573;DB;DP=53;ExcessHet=3.9794;FS=1.735;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.26;ReadPosRankSum=-9.590e-01;SOR=0.475;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,19:53:99:425,0,832
chr5	147479991	rs2303061	C	T	1781.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.058e+00;DB;DP=82;ExcessHet=3.9794;FS=9.772;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=0.694;SOR=1.410;VQSLOD=18.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,30:82:99:654,0,1443
chr5	147480007	rs2303062	A	G	2121.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.40;DB;DP=89;ExcessHet=3.9794;FS=6.647;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.46;SOR=1.154;VQSLOD=22.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,37:89:99:929,0,1317
chr5	147480027	rs2303063	G	A	1863.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.860e-01;DB;DP=95;ExcessHet=3.9794;FS=6.338;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=2.17;SOR=1.036;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,42:95:99:894,0,1271
chr5	147480080	rs2303064	G	A	3868.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.131;DB;DP=90;ExcessHet=6.9897;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=0.402;SOR=0.704;VQSLOD=6.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,44:90:99:1109,0,1060
chr5	147480112	rs2303065	T	C	1755.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.633;DB;DP=72;ExcessHet=3.9794;FS=1.417;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.45;ReadPosRankSum=-1.700e-02;SOR=0.558;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,39:72:99:950,0,877
chr5	147480868	rs2303066	G	A	452.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.535e+00;DB;DP=20;ExcessHet=3.9794;FS=14.294;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=-1.699e+00;SOR=0.018;VQSLOD=13.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:198,0,468
chr5	147480955	rs2303067	A	G	1374.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.807;DB;DP=57;ExcessHet=3.9794;FS=5.965;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.85;ReadPosRankSum=1.24;SOR=0.337;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,23:57:99:581,0,820
chr5	147481018	rs2303068	G	A	1523.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.330;DB;DP=73;ExcessHet=3.9794;FS=4.968;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=0.329;SOR=0.818;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,24:73:99:510,0,1214
chr5	147481430	rs6896303	A	G	3093.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=112;ExcessHet=3.9794;FS=1.039;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.00;ReadPosRankSum=1.55;SOR=0.670;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,72:112:99:1773,0,814
chr5	147484465	rs34473560	GA	G	514.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.595;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.54;ReadPosRankSum=0.166;SOR=0.795;VQSLOD=5.94;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,12:21:99:275,0,190
chr5	147486677	rs880687	C	A	5263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.050e-01;DB;DP=200;ExcessHet=3.9794;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=0.223;SOR=0.797;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:109,91:200:99:2292,0,2786
chr5	147486778	rs58761763	CCT	C	3206.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.946e+00;DB;DP=201;ExcessHet=3.0103;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.95;ReadPosRankSum=-9.440e-01;SOR=0.852;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:115,86:201:99:3215,0,4538
chr5	147486818	rs3036740	CGT	C	6263.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.783;DB;DP=127;ExcessHet=3.9794;FS=0.432;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=3.18;SOR=0.641;VQSLOD=5.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:51,76:127:99:3038,0,1865
chr5	147487001	rs11953763	G	A	438.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.995e+00;DB;DP=13;ExcessHet=6.9897;FS=4.130;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.98;ReadPosRankSum=1.10;SOR=0.088;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:175,0,253
chr5	147488367	rs2303071	C	T	2335.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.954;DB;DP=47;ExcessHet=1.5490;FS=1.997;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=0.075;SOR=1.037;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:564,0,615
chr5	147488575	rs3815741	T	C	882.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=12;ExcessHet=3.9794;FS=8.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.00;ReadPosRankSum=1.28;SOR=0.058;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:178,0,255
chr5	147491193	rs3815740	A	G	529.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.708e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.70;ReadPosRankSum=1.35;SOR=1.524;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:312,0,386
chr5	147491218	rs2287770	A	G	693.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.650e+00;DB;DP=28;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.15;ReadPosRankSum=0.811;SOR=1.483;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,13:28:99:393,0,475
chr5	147491299	rs2287769	C	T	2164.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=78;ExcessHet=3.9794;FS=3.089;MQ=59.99;MQRankSum=1.03;POSITIVE_TRAIN_SITE;QD=13.04;ReadPosRankSum=1.30;SOR=1.001;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,39:78:99:1055,0,987
chr5	147491532	rs2287768	T	C	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.80;ReadPosRankSum=-3.720e-01;SOR=1.022;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,11:19:99:423,0,280
chr5	147491552	rs2287767	A	G	658.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.145e+00;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.31;ReadPosRankSum=0.729;SOR=1.002;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,7:13:99:231,0,203
chr5	147491577	rs2287766	C	T	542.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.370e-01;DB;DP=10;ExcessHet=3.9794;FS=3.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.49;ReadPosRankSum=1.74;SOR=0.178;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:219,0,140
chr5	147491612	rs2287765	T	C	413.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=1.01;SOR=0.264;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:152,0,101
chr5	147491624	rs6883062	A	T	364.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.67;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.42;ReadPosRankSum=1.04;SOR=0.330;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:68:111,0,68
chr5	147492108	rs7707841	C	T	185.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.190e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.97;ReadPosRankSum=-3.190e-01;SOR=0.941;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:147492108_C_T:90,6,0:147492108
chr5	147492111	rs112721496	A	G	78.21	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.03;SOR=0.693;VQSLOD=19.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:147492108_C_T:90,6,0:147492108
chr5	147492190	rs113469247	C	T	190.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.77;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,3:4:33:0|1:147492190_C_T:123,0,33:147492190
chr5	147492214	rs113717952	A	G	259.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.630;DB;DP=8;ExcessHet=3.9794;FS=3.310;MQ=60.00;MQRankSum=0.00;QD=17.27;ReadPosRankSum=0.652;SOR=2.546;VQSLOD=19.25;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:147492190_C_T:156,0,156:147492190
chr5	147492221	rs150897404	T	C	340.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=6.726;MQ=60.00;MQRankSum=0.00;QD=21.26;ReadPosRankSum=0.703;SOR=3.086;VQSLOD=15.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:147492190_C_T:156,0,156:147492190
chr5	147492223	rs138483982	A	G	340.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=8;ExcessHet=3.9794;FS=2.392;MQ=60.00;MQRankSum=0.00;QD=18.90;ReadPosRankSum=0.545;SOR=2.030;VQSLOD=21.16;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,4:8:99:0|1:147492190_C_T:156,0,156:147492190
chr5	147492241	rs113307434	A	AAAAACC	517.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=13;ExcessHet=3.9794;FS=1.725;MQ=60.00;MQRankSum=0.00;QD=15.21;ReadPosRankSum=1.37;SOR=1.292;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,5:13:99:0|1:147492190_C_T:186,0,321:147492190
chr5	147492248	rs149567477	A	AAAAC	635.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=15;ExcessHet=3.9794;FS=3.227;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.71;ReadPosRankSum=1.04;SOR=1.306;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:9,6:15:99:0|1:147492190_C_T:225,0,340:147492190
chr5	147492288	rs77701346	G	A	1445.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.760e-01;DB;DP=33;ExcessHet=3.9794;FS=6.110;MQ=60.00;MQRankSum=0.00;QD=18.06;ReadPosRankSum=0.163;SOR=0.279;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,15:33:99:0|1:147492288_G_A:576,0,705:147492288
chr5	147492289	rs79688803	A	G	1445.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=33;ExcessHet=3.9794;FS=4.514;MQ=60.00;MQRankSum=0.00;QD=17.84;ReadPosRankSum=0.127;SOR=0.317;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,15:33:99:0|1:147492288_G_A:576,0,705:147492288
chr5	147492384	rs72660259	T	G	1669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=62;ExcessHet=3.9794;FS=0.612;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=1.17;SOR=0.613;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:601,0,803
chr5	147492662	rs55816145	C	A	137.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=19.65;ReadPosRankSum=1.01;SOR=0.941;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:146,0,107
chr5	147492679	rs41291433	G	T	67.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.63;ReadPosRankSum=-9.670e-01;SOR=1.179;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:76,0,34
chr5	147492700	rs201488506	C	A	31.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:147492700_C_A:39,0,82:147492700
chr5	147492701	rs199893956	A	G	31.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.79;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:147492700_C_A:39,0,82:147492700
chr5	147492718	rs73794675	G	C	31.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.79;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:147492700_C_A:39,0,82:147492700
chr5	147492720	rs73794676	A	G	31.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.79;ReadPosRankSum=-6.740e-01;SOR=0.693;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,1:2:39:0|1:147492700_C_A:39,0,82:147492700
chr5	147493780	rs3815737	T	G	691.66	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.952;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.82;ReadPosRankSum=0.786;SOR=1.802;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:262,18,0
chr5	147493791	rs3815736	C	T	335.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=1.38;SOR=1.022;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,1:6:53:0|1:147493791_C_T:53,0,204:147493791
chr5	147493803	rs35860121	G	GA	439.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=11;ExcessHet=1.5490;FS=4.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.15;ReadPosRankSum=-8.200e-01;SOR=2.694;VQSLOD=6.17;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:147493791_C_T:99,0,252:147493791
chr5	147493831	.	C	CT	1261.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DP=22;ExcessHet=3.9794;FS=1.490;MQ=60.00;MQRankSum=0.00;QD=18.56;ReadPosRankSum=-1.073e+00;SOR=1.267;VQSLOD=5.79;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,6:22:99:0|1:147493831_C_CT:173,0,644:147493831
chr5	147493833	rs35043219	C	T	855.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=22;ExcessHet=1.5490;FS=1.497;MQ=60.00;MQRankSum=0.00;QD=21.95;ReadPosRankSum=0.369;SOR=1.110;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,6:22:99:0|1:147493831_C_CT:173,0,644:147493831
chr5	147493871	rs3815735	G	A	3211.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=36;ExcessHet=3.0103;FS=0.976;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.22;ReadPosRankSum=0.834;SOR=0.921;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1276,108,0
chr5	147496307	rs2052532	G	A	182.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=0.608;SOR=0.399;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,103
chr5	147497773	rs3777136	T	G	146.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.876;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.30;ReadPosRankSum=0.231;SOR=0.941;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:97:154,0,97
chr5	147497871	rs6891892	T	C	1034.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.908;DB;DP=14;ExcessHet=3.0103;FS=5.153;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.97;ReadPosRankSum=0.393;SOR=0.136;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:480,42,0
chr5	147497932	rs3777135	T	C	933.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=44;ExcessHet=3.9794;FS=2.207;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.44;ReadPosRankSum=1.34;SOR=1.009;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,16:44:99:492,0,747
chr5	147498019	rs3777134	G	A	1527.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.59;DB;DP=83;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.32;ReadPosRankSum=0.786;SOR=0.655;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,34:83:99:796,0,1167
chr5	147498389	rs3764927	G	C	267.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=3;ExcessHet=1.5490;FS=6.021;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.42;ReadPosRankSum=1.28;SOR=2.526;VQSLOD=19.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	147498523	rs3764926	T	C	942.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.750e-01;DB;DP=40;ExcessHet=3.9794;FS=4.333;MQ=59.73;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=0.322;SOR=0.280;VQSLOD=5.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,25:40:99:651,0,423
chr5	147498652	rs9325073	C	G	5145.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.760;DB;DP=95;ExcessHet=3.9794;FS=0.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.27;ReadPosRankSum=1.16;SOR=0.701;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:2803,283,0
chr5	147498669	rs9325074	G	A	6117.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.900e-02;DB;DP=88;ExcessHet=3.9794;FS=2.720;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.77;ReadPosRankSum=0.949;SOR=0.869;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,88:88:99:3314,267,0
chr5	147498672	rs12518996	G	A	2535.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.400e-02;DB;DP=88;ExcessHet=3.9794;FS=1.184;MQ=60.00;MQRankSum=0.00;QD=14.74;ReadPosRankSum=0.372;SOR=0.794;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,47:88:99:1113,0,947
chr5	147498763	rs9325075	C	A	2325.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.105e+00;DB;DP=34;ExcessHet=3.9794;FS=0.941;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.22;ReadPosRankSum=0.700;SOR=0.902;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1174,102,0
chr5	147498849	rs6872326	C	T	507.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.745e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.405;SOR=0.693;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:351,27,0
chr5	147499426	rs6580523	A	C	285.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.95;ReadPosRankSum=0.524;SOR=1.179;VQSLOD=23.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:25:157,0,25
chr5	147499616	rs17704908	C	T	1551.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.670e-01;DB;DP=65;ExcessHet=3.9794;FS=6.730;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.31;ReadPosRankSum=0.812;SOR=1.249;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,29:65:99:666,0,907
chr5	147499670	rs33920397	C	T	1949.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.253e+00;DB;DP=94;ExcessHet=3.9794;FS=4.475;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.47;ReadPosRankSum=0.868;SOR=0.759;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,42:94:99:937,0,1308
chr5	147499891	rs2303070	G	T	598.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=36;ExcessHet=3.9794;FS=3.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.31;ReadPosRankSum=-9.900e-01;SOR=1.287;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:409,0,473
chr5	147503318	rs58409150	A	G	205.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.94;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.465;SOR=0.648;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:214,0,355
chr5	147504315	rs2052537	A	T	4291.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.87;DB;DP=61;ExcessHet=3.9794;FS=6.848;MQ=59.89;MQRankSum=0.939;QD=18.82;ReadPosRankSum=0.604;SOR=1.112;VQSLOD=-3.976e-01;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,61:61:99:1|1:147504305_C_CT:2132,183,0:147504305
chr5	147504539	rs2303075	G	C	590.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=11;ExcessHet=3.9794;FS=2.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.898;SOR=0.223;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:147504539_G_C:147,0,271:147504539
chr5	147504541	rs2303074	A	T	590.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=11;ExcessHet=3.9794;FS=2.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.39;ReadPosRankSum=0.908;SOR=0.223;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,4:11:99:0|1:147504539_G_C:147,0,271:147504539
chr5	147504557	rs2052536	T	G	546.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=9;ExcessHet=3.9794;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.37;ReadPosRankSum=0.310;SOR=0.114;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,4:9:99:1|0:147504539_G_C:139,0,195:147504539
chr5	147504905	rs3764931	A	G	264.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.41;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:72:72,0,72
chr5	147505116	rs3764930	G	A	1425.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=63;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.64;ReadPosRankSum=1.29;SOR=0.688;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,26:63:99:625,0,910
chr5	147505227	rs2112767	G	A	2173.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.411;DB;DP=75;ExcessHet=3.9794;FS=1.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-7.180e-01;SOR=0.874;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,35:75:99:925,0,1118
chr5	147506867	rs2303073	A	G	107.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.83;ReadPosRankSum=1.15;SOR=1.609;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:31:114,0,31
chr5	147506891	rs2303072	G	A	66.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.31;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:74,0,31
chr5	147510776	rs6895434	T	C	2157.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=85;ExcessHet=3.9794;FS=1.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=0.205;SOR=0.875;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,36:85:99:1002,0,1404
chr5	147510866	rs2400478	T	C	3613.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=176;ExcessHet=3.9794;FS=1.365;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.69;ReadPosRankSum=0.315;SOR=0.600;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:91,85:176:99:1897,0,2289
chr5	147513178	rs60763631	C	T	64.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.51;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:72,0,33
chr5	147516470	rs4334874	C	T	2059.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191e+00;DB;DP=18;ExcessHet=3.9794;FS=1.250;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=0.319;SOR=0.504;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:99:103,0,472
chr5	147516598	rs4349706	T	C	5261.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.730;DB;DP=65;ExcessHet=3.9794;FS=0.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.39;ReadPosRankSum=0.101;SOR=0.750;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,25:65:99:585,0,1010
chr5	147516762	rs3088193	C	G	2305.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.334e+00;DB;DP=31;ExcessHet=3.9794;FS=2.540;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.83;ReadPosRankSum=0.278;SOR=1.179;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,14:31:99:400,0,569
chr5	147516884	rs72660265	T	C	226.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.64;ReadPosRankSum=-1.890e-01;SOR=1.085;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:113,0,101
chr5	147549163	rs4269285	T	C	3481.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=47;ExcessHet=3.0103;FS=1.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.76;ReadPosRankSum=0.245;SOR=1.038;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1644,141,0
chr5	147549492	rs7726994	T	A	140.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.53;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.20;ReadPosRankSum=-3.190e-01;SOR=0.330;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:147549492_T_A:135,9,0:147549492
chr5	147549507	rs10634880	C	CAT	121.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=2.833;VQSLOD=6.16;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:147549492_T_A:135,9,0:147549492
chr5	147550938	rs1156195	T	C	348.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.83;SOR=2.303;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:183,15,0
chr5	147554889	rs10052031	A	C	3125.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=23.15;ReadPosRankSum=0.792;SOR=0.779;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,25:25:75:911,75,0
chr5	147554997	rs147123556	TTTTTTCC	T	8887.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.351e+00;DB;DP=65;ExcessHet=3.0103;FS=3.380;MQ=59.95;MQRankSum=0.891;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=33.67;ReadPosRankSum=1.77;SOR=0.490;VQSLOD=0.388;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,65:65:99:2925,196,0
chr5	147555029	rs10074328	C	T	5690.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.970e-01;DB;DP=58;ExcessHet=3.0103;FS=0.572;MQ=60.00;MQRankSum=0.00;QD=22.85;ReadPosRankSum=1.40;SOR=0.791;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1731,174,0
chr5	147585797	.	C	CTCATT	1566.60	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.99;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.55;ReadPosRankSum=0.496;SOR=0.856;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:69:1028,69,0
chr5	147585799	.	TAAC	T	1820.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.56;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=30.35;ReadPosRankSum=0.917;SOR=0.806;VQSLOD=5.81;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:69:1029,69,0
chr5	147585805	.	C	T	1569.57	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.499e+00;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.06;SOR=0.911;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:69:1028,69,0
chr5	147585806	.	AC	A	1575.56	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.31;DP=17;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.64;SOR=0.608;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:69:1029,69,0
chr5	147593231	rs10038416	A	G	840.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.48;ReadPosRankSum=-1.188e+00;SOR=1.352;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:477,33,0
chr5	147593497	rs12186491	C	A	9285.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.146e+00;DB;DP=157;ExcessHet=3.9794;FS=0.548;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.10;ReadPosRankSum=0.329;SOR=0.794;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4721,470,0
chr5	147693202	rs17719662	A	G	66.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:34:75,0,34
chr5	147693826	rs3749690	G	A	1488.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=44;ExcessHet=3.9794;FS=3.518;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.29;ReadPosRankSum=1.53;SOR=1.044;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:559,0,583
chr5	147695283	rs3217238	C	CTCA	3376.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=93;ExcessHet=3.9794;FS=2.525;MQ=60.00;MQRankSum=0.00;QD=18.05;ReadPosRankSum=-9.050e-01;SOR=0.701;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:47,46:93:99:1814,0,1991
chr5	147715820	rs6894032	G	T	928.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.15;DB;DP=19;ExcessHet=3.9794;FS=3.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=1.46;SOR=2.338;VQSLOD=21.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,12:19:99:452,0,178
chr5	147719433	rs5872077	CT	C	279.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.42;ReadPosRankSum=1.28;SOR=1.371;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:75:75,0,75
chr5	147774662	rs10072051	T	G	575.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.01;ReadPosRankSum=0.982;SOR=1.358;VQSLOD=23.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:374,0,155
chr5	147781732	rs34685718	T	G	2718.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.34;DB;DP=88;ExcessHet=3.9794;FS=1.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=0.517;SOR=0.813;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,41:88:99:1059,0,1142
chr5	147788798	rs10077690	A	G	2462.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.470e-01;DB;DP=78;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.733;SOR=0.731;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,46:78:99:1200,0,763
chr5	147793971	rs12717973	G	A	650.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.48;ReadPosRankSum=1.02;SOR=1.112;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:355,0,300
chr5	147795697	.	A	AT	74.32	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DP=25;ExcessHet=3.0103;FS=5.528;MQ=60.00;MQRankSum=0.00;QD=3.23;ReadPosRankSum=0.397;SOR=2.215;VQSLOD=3.86;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,7:25:83:83,0,334
chr5	147803557	rs11168047	G	T	881.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.521e+00;DB;DP=30;ExcessHet=3.9794;FS=1.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=0.416;SOR=0.527;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,14:30:99:348,0,532
chr5	147805120	rs10043775	T	C	2097.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=71;ExcessHet=3.9794;FS=3.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.07;ReadPosRankSum=0.276;SOR=1.009;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,35:71:99:943,0,874
chr5	147812901	rs6861078	T	G	803.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.879;DB;DP=18;ExcessHet=3.9794;FS=2.599;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.85;ReadPosRankSum=0.356;SOR=0.319;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:298,0,224
chr5	147819366	rs10051223	T	C	821.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.40;DB;DP=32;ExcessHet=3.9794;FS=2.053;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=1.27;SOR=0.998;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,12:32:99:353,0,520
chr5	147820207	rs3734121	G	A	230.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=-2.720e-01;SOR=0.859;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:136,12,0
chr5	147821469	rs3734120	C	T	319.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=-5.910e-01;SOR=1.244;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,11:18:99:328,0,203
chr5	147856232	rs6580550	T	C	1059.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DB;DP=22;ExcessHet=1.5490;FS=1.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=0.794;SOR=1.165;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:315,0,348
chr5	147856257	rs11411672	G	GA	584.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=27;ExcessHet=3.9794;FS=1.342;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=1.87;SOR=1.110;VQSLOD=6.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,13:27:99:290,0,319
chr5	147856333	rs7733088	G	A	1342.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.396;DB;DP=50;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.70;ReadPosRankSum=0.130;SOR=0.732;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:543,0,690
chr5	147856392	rs7715901	A	G	1652.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=65;ExcessHet=3.9794;FS=2.349;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.88;ReadPosRankSum=0.516;SOR=0.484;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,26:65:99:649,0,918
chr5	147856522	rs7733410	G	A	1196.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.726;DB;DP=38;ExcessHet=3.9794;FS=2.066;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.33;ReadPosRankSum=0.387;SOR=0.419;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,20:38:99:522,0,448
chr5	147889702	rs56373125	A	G	373.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.649;DB;DP=26;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.515;SOR=1.493;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:382,0,491
chr5	147902563	rs76072546	G	C	115.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.59;ReadPosRankSum=1.38;SOR=0.269;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:54:54,0,238
chr5	147902938	rs79129596	G	C	446.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.534e+00;DB;DP=22;ExcessHet=3.9794;FS=1.684;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=1.25;SOR=0.382;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:297,0,309
chr5	147902972	rs2277050	G	A	223.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-3.070e-01;SOR=0.425;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:173,0,180
chr5	147928130	rs13171326	T	C	474.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.723;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.135;SOR=0.693;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:97:174,0,97
chr5	147928225	rs2278392	C	T	1803.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.215;DB;DP=30;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.29;ReadPosRankSum=0.356;SOR=0.627;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,13:30:99:345,0,530
chr5	148016857	rs9325107	G	T	150.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.02;ReadPosRankSum=1.15;SOR=1.872;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:81,0,32
chr5	148042230	rs7720668	G	T	1210.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.191e+00;DB;DP=43;ExcessHet=3.9794;FS=3.733;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=-6.160e-01;SOR=1.083;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,16:43:99:301,0,689
chr5	148045282	rs1820076	C	T	933.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=25;ExcessHet=6.9897;FS=3.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.38;ReadPosRankSum=0.192;SOR=1.501;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,11:25:99:364,0,401
chr5	148206348	rs1042711	C	T	2409.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.920e-01;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.01;ReadPosRankSum=-4.010e-01;SOR=2.995;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:912,66,0
chr5	148206375	rs1801704	C	T	3725.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.144e+00;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.85;ReadPosRankSum=-8.030e-01;SOR=0.761;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1433,111,0
chr5	148206473	rs1042714	G	C	10623.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.100e-01;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=0.180;SOR=0.692;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4311,411,0
chr5	148206646	rs1042717	G	A	7394.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.424;DB;DP=155;ExcessHet=1.5490;FS=3.323;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=-3.710e-01;SOR=0.898;VQSLOD=7.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,155:155:99:5060,465,0
chr5	148206917	rs1042718	C	A	11277.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=236;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=-2.930e-01;SOR=0.731;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,236:236:99:7501,706,0
chr5	148207447	rs1042719	G	C	3888.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.579;DB;DP=78;ExcessHet=1.5490;FS=1.313;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.10;ReadPosRankSum=-1.600e-01;SOR=0.550;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2570,234,0
chr5	148207633	rs1042720	G	A	2057.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.719;DB;DP=51;ExcessHet=1.5490;FS=0.749;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.59;ReadPosRankSum=2.09;SOR=0.605;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,49:51:99:1371,101,0
chr5	148207667	rs141761380	C	CCG	1239.72	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.77;DB;DP=21;ExcessHet=1.5490;FS=6.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=0.038;SOR=1.981;VQSLOD=6.46;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,18:21:65:863,65,0
chr5	148383412	.	CA	C	317.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.740e-01;DP=10;ExcessHet=3.0103;FS=2.637;MQ=59.76;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=1.47;SOR=0.269;VQSLOD=6.99;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:21:21,0,72
chr5	148407708	rs1432794	A	C	9704.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=92;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.05;SOR=0.780;VQSLOD=21.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,92:92:99:3303,276,0
chr5	148411369	rs11168081	C	T	4346.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=1.699;VQSLOD=21.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1242,117,0
chr5	148425659	rs72835362	G	A	497.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-01;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=1.12;SOR=0.892;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,18:25:99:506,0,175
chr5	148521799	rs11744532	T	C	2183.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.17;SOR=6.479;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:384,27,0
chr5	148562829	rs6886115	G	A	1359.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DB;DP=51;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.52;ReadPosRankSum=0.110;SOR=0.667;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,17:51:99:384,0,1026
chr5	148562890	rs6886262	G	A	3250.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.150e+00;DB;DP=60;ExcessHet=1.5490;FS=3.530;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.12;ReadPosRankSum=1.90;SOR=0.405;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1997,179,0
chr5	148562981	rs6887628	C	A	2461.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.860e-01;DB;DP=81;ExcessHet=3.9794;FS=1.782;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.02;ReadPosRankSum=0.695;SOR=0.685;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,39:81:99:938,0,1202
chr5	148578566	rs2068262	C	T	2559.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.73;DB;DP=40;ExcessHet=3.9794;FS=1.567;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=1.23;SOR=0.935;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,10:40:99:288,0,760
chr5	148578636	rs13362048	T	C	3529.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=63;ExcessHet=3.9794;FS=5.083;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=-2.800e-02;SOR=1.059;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,25:63:99:567,0,854
chr5	148580025	rs6580602	G	A	3318.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.904;DB;DP=46;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=-9.000e-03;SOR=0.699;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,24:46:99:724,0,643
chr5	148586451	rs5872113	A	AG	3793.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.89;SOR=2.768;VQSLOD=5.73;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1353,114,0
chr5	148589969	rs2918282	A	G	63.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=2.303;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:75,6,0
chr5	148590423	rs2918281	T	C	3024.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.87;DB;DP=66;ExcessHet=1.5490;FS=0.844;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=-9.530e-01;SOR=0.609;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:2171,198,0
chr5	148590620	rs2918280	T	A	293.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.282e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.66;ReadPosRankSum=0.524;SOR=3.056;VQSLOD=20.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:161,12,0
chr5	148596375	rs2963495	G	T	1392.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.620e-01;DB;DP=33;ExcessHet=1.5490;FS=3.694;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=0.669;SOR=1.802;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1181,99,0
chr5	148596693	rs3839234	TG	T	5131.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.09;DB;DP=102;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=0.117;SOR=0.679;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,102:102:99:3779,307,0
chr5	148596841	rs2918278	G	A	709.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.063e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=-1.194e+00;SOR=0.941;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:565,45,0
chr5	148610276	rs2918265	C	A	4040.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.90;DB;DP=98;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.43;ReadPosRankSum=0.919;SOR=0.688;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,97:98:99:3051,284,0
chr5	148612619	rs998583	G	T	973.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.43;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.64;ReadPosRankSum=-1.504e+00;SOR=0.941;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:518,36,0
chr5	148618708	rs58203769	A	G	1621.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=30;ExcessHet=1.5490;FS=1.463;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=-1.009e+00;SOR=0.390;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,30:30:90:1089,90,0
chr5	148618749	rs59032271	C	T	3846.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.896;DB;DP=53;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.79;ReadPosRankSum=-6.270e-01;SOR=0.802;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,53:53:99:1|1:148618749_C_T:2448,169,0:148618749
chr5	148618752	rs59757169	G	A	3883.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.39;DB;DP=57;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.07;ReadPosRankSum=-5.900e-01;SOR=0.718;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,57:57:99:1|1:148618749_C_T:2485,172,0:148618749
chr5	148618960	.	G	A	547.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DP=51;ExcessHet=3.0103;FS=1.221;MQ=60.00;MQRankSum=0.00;QD=10.73;ReadPosRankSum=-5.210e-01;SOR=1.022;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:31,20:51:99:0|1:148618960_G_A:556,0,908:148618960
chr5	148618964	rs34180939	G	A	2700.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.58;DB;DP=48;ExcessHet=1.5490;FS=1.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=-3.000e-02;SOR=0.521;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,48:48:99:1|1:148618960_G_A:1919,153,0:148618960
chr5	148619189	rs11326264	AG	A	2580.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.080e-01;DB;DP=57;ExcessHet=1.5490;FS=2.946;MQ=59.90;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=0.598;SOR=0.385;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1813,171,0
chr5	148620224	rs3797315	T	G	8137.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.53;DB;DP=189;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=0.271;SOR=0.718;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,189:189:99:6018,567,0
chr5	148620535	rs748066	G	A	134.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.62;SOR=3.258;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:149,12,0
chr5	148621805	rs2289283	T	C	484.79	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.487e+00;DB;DP=5;ExcessHet=1.5490;FS=4.559;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=1.31;SOR=2.833;VQSLOD=19.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr5	148622329	rs12153240	A	G	722.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.82;SOR=1.329;VQSLOD=21.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:739,66,0
chr5	148622345	rs12152968	C	T	609.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.46;SOR=1.721;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:626,60,0
chr5	148625972	rs34340554	TA	T	1187.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.676;DB;DP=36;ExcessHet=1.5490;FS=7.781;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=-2.201e+00;SOR=1.784;VQSLOD=4.71;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1011,108,0
chr5	148626067	rs61999264	G	A	814.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.785;DB;DP=60;ExcessHet=3.0103;FS=1.035;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=-8.200e-02;SOR=0.502;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,32:60:99:823,0,673
chr5	148627054	rs10035236	G	A	1214.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.81;SOR=2.494;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1231,111,0
chr5	148627252	rs9325136	G	A	3546.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.400e-01;DB;DP=74;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=-1.700e-01;SOR=0.754;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2424,222,0
chr5	148627503	rs2304609	C	T	781.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.47;SOR=2.636;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:798,63,0
chr5	148627597	rs2304610	C	A	279.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.89;SOR=2.833;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:293,24,0
chr5	148629727	rs148675463	GAC	G	258.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.45;ReadPosRankSum=-3.090e-01;SOR=1.828;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,7:14:99:267,0,268
chr5	148630191	rs1808828	C	A	571.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.324;DB;DP=51;ExcessHet=3.0103;FS=1.064;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-3.830e-01;SOR=0.542;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,21:51:99:580,0,833
chr5	148637733	rs35345919	C	G	69.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.87;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:72:78,0,72
chr5	148638059	rs150472472	G	C	569.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=33;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=1.19;SOR=0.549;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:578,0,382
chr5	148638995	rs182004195	G	A	677.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.99;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.93;ReadPosRankSum=0.027;SOR=0.931;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,23:40:99:686,0,360
chr5	148639062	rs1438688	C	T	1013.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.050e-01;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=0.835;SOR=0.706;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,40:82:99:1022,0,1179
chr5	148639193	rs9325138	A	G	3053.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.031e+00;DB;DP=122;ExcessHet=3.9794;FS=2.836;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.67;ReadPosRankSum=0.094;SOR=0.820;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,73:122:99:1812,0,1234
chr5	148639312	rs1046441	A	T	1936.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.087e+00;DB;DP=62;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.389;SOR=0.706;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,32:62:99:868,0,851
chr5	148639337	rs1046443	T	A	1652.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.653e+00;DB;DP=58;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=-2.150e-01;SOR=0.635;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,29:58:99:735,0,901
chr5	148651395	rs62378114	A	T	134.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.260e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.92;ReadPosRankSum=1.18;SOR=0.223;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:143,0,138
chr5	148651711	rs12054749	T	C	1719.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=59.65;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.50;ReadPosRankSum=1.06;SOR=0.859;VQSLOD=5.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:658,66,0
chr5	148679301	rs171286	C	G	9443.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.085e+00;DB;DP=76;ExcessHet=3.0103;FS=15.325;MQ=59.97;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=29.51;ReadPosRankSum=-1.116e+00;SOR=0.133;VQSLOD=0.697;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2615,228,0
chr5	148679421	rs813036	C	T	2023.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.231e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.60;ReadPosRankSum=-1.834e+00;SOR=3.461;VQSLOD=16.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:676,48,0
chr5	148682188	rs352341	G	C	3511.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.180e-01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.01;ReadPosRankSum=-1.950e-01;SOR=0.745;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,38:38:99:1205,114,0
chr5	148682360	rs352340	G	T	599.78	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.33;SOR=5.549;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr5	148742598	.	C	T	534.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.24;DP=55;ExcessHet=3.0103;FS=4.090;MQ=60.00;MQRankSum=0.00;QD=9.71;ReadPosRankSum=0.575;SOR=1.297;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,19:55:99:543,0,920
chr5	148742693	rs1693917	A	G	1310.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.290e-01;DB;DP=14;ExcessHet=3.0103;FS=4.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.49;ReadPosRankSum=0.412;SOR=2.726;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:569,42,0
chr5	148747393	rs353256	T	A	1531.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.03;SOR=5.084;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:498,39,0
chr5	148747902	rs4705336	G	C	8710.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=279;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.22;SOR=1.208;VQSLOD=20.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,279:279:99:8727,837,0
chr5	148748023	rs142120062	C	A	1731.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776e+00;DB;DP=146;ExcessHet=3.0103;FS=0.617;MQ=60.00;MQRankSum=0.00;QD=11.86;ReadPosRankSum=-5.820e-01;SOR=0.610;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,70:146:99:1740,0,2171
chr5	148759012	.	C	G	63.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.81;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=21.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:54:72,0,54
chr5	148808875	rs34290100	C	CT	1235.21	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.470e-01;DB;DP=37;ExcessHet=1.5490;FS=2.556;MQ=60.00;MQRankSum=0.00;QD=15.84;ReadPosRankSum=0.469;SOR=0.395;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,34:37:61:880,61,0
chr5	148810076	rs116464056	C	A	139.43	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.24;ReadPosRankSum=0.524;SOR=0.368;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:65:148,0,65
chr5	148886526	rs115256922	G	C	158.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-1.304e+00;SOR=0.693;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,6:16:99:167,0,351
chr5	148889672	rs2077482	A	T	395.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=12;ExcessHet=1.5490;FS=2.236;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.85;ReadPosRankSum=0.709;SOR=1.569;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:155,0,130
chr5	148892950	rs3733848	C	A	90.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.140e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=0.992;SOR=0.368;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:99,0,175
chr5	148930076	rs11478467	TA	T	903.82	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=19;ExcessHet=0.4576;FS=0.000;MQ=59.84;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.78;ReadPosRankSum=0.067;SOR=0.734;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:2,17:19:8:398,8,0
chr5	148977613	rs7709875	C	T	4340.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.745e+00;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.15;ReadPosRankSum=1.57;SOR=0.610;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1576,146,0
chr5	148977825	.	A	ACTC	185.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.262;DP=9;ExcessHet=3.0103;FS=6.854;MQ=60.00;MQRankSum=0.00;QD=20.67;ReadPosRankSum=-1.200e-01;SOR=1.872;VQSLOD=4.76;culprit=FS	GT:AD:DP:GQ:PL	0/1:4,5:9:99:192,0,165
chr5	148989410	rs7707438	A	G	76.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=2.303;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr5	148997686	rs6579750	A	G	21790.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.200e-01;DB;DP=306;ExcessHet=3.0103;FS=0.741;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.37;ReadPosRankSum=1.43;SOR=0.588;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,306:306:99:9125,917,0
chr5	148999635	rs10716197	CA	C	111.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.27;ReadPosRankSum=1.64;SOR=0.693;VQSLOD=6.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,6:12:99:120,0,113
chr5	148999881	rs11409449	G	GC	5188.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=1.340;VQSLOD=5.98;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2555,208,0
chr5	149000039	rs7733761	C	T	9018.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=1.007;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4289,419,0
chr5	149000255	rs7737611	A	G	420.81	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.55;SOR=4.977;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:117,9,0
chr5	149001283	rs78820823	T	C	3821.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.446;DB;DP=75;ExcessHet=1.5490;FS=0.797;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.89;ReadPosRankSum=0.457;SOR=0.831;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,35:75:99:942,0,1015
chr5	149001551	rs4629585	A	C	2121.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DB;DP=169;ExcessHet=3.0103;FS=0.583;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.55;ReadPosRankSum=1.17;SOR=0.625;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,80:169:99:2130,0,2276
chr5	149003851	rs10037341	A	C	1080.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=59.60;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.87;ReadPosRankSum=0.464;SOR=3.056;VQSLOD=5.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:149,0,139
chr5	149006837	rs7732873	A	G	2800.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=48;ExcessHet=3.9794;FS=5.172;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.60;ReadPosRankSum=0.394;SOR=1.249;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,22:48:99:604,0,768
chr5	149006879	rs7733002	A	G	1596.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.18;DB;DP=23;ExcessHet=3.9794;FS=12.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.83;ReadPosRankSum=1.56;SOR=3.785;VQSLOD=12.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,9:23:99:312,0,427
chr5	149008403	rs1056993	A	G	4015.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.17;DB;DP=56;ExcessHet=3.9794;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=-2.880e-01;SOR=0.632;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,25:56:99:652,0,748
chr5	149008467	rs3733662	C	A	909.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.900e-01;DB;DP=32;ExcessHet=3.9794;FS=4.400;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.448;SOR=1.288;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,10:32:99:244,0,635
chr5	149008521	rs1135093	A	G	1652.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.92;DB;DP=15;ExcessHet=3.9794;FS=4.055;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=0.804;SOR=0.297;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:164,0,290
chr5	149240571	rs10045293	A	T	1182.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.550e-01;DB;DP=102;ExcessHet=3.0103;FS=1.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.59;ReadPosRankSum=0.234;SOR=0.490;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,51:102:99:1191,0,1271
chr5	149240767	rs30887	T	C	682.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.930e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.27;ReadPosRankSum=0.557;SOR=1.402;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:96:167,0,96
chr5	149240788	rs6875974	T	A	179.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.91;ReadPosRankSum=-1.890e-01;SOR=0.892;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:79,0,32
chr5	149242950	rs55892806	C	T	122.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.58;ReadPosRankSum=-2.310e-01;SOR=0.527;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:131,0,162
chr5	149247738	rs6864267	C	A	1065.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.470;DB;DP=120;ExcessHet=3.0103;FS=2.387;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.88;ReadPosRankSum=1.39;SOR=0.640;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,48:120:99:1074,0,1747
chr5	149247999	rs60254740	C	T	127.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.18;ReadPosRankSum=0.00;SOR=0.941;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:72:136,0,72
chr5	149263074	rs121909835	C	T	1567.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=120;ExcessHet=3.0103;FS=0.674;MQ=60.00;MQRankSum=0.00;QD=13.06;ReadPosRankSum=0.377;SOR=0.620;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,65:120:99:1576,0,1199
chr5	149275070	rs10625977	A	ATGT	2861.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.98;SOR=2.602;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,31:31:92:1331,92,0
chr5	149276373	rs2244836	T	C	3072.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=68;ExcessHet=6.9897;FS=0.482;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-4.390e-01;SOR=0.658;VQSLOD=6.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,30:68:99:741,0,916
chr5	149276567	rs30818	T	G	575.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=20;ExcessHet=3.9794;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=-3.480e-01;SOR=0.256;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:277,0,408
chr5	149278258	rs30819	A	T	1279.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=41;ExcessHet=3.9794;FS=9.257;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.54;ReadPosRankSum=1.32;SOR=0.126;VQSLOD=20.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,30:41:99:795,0,295
chr5	149283406	rs251346	C	G	5131.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=34.67;SOR=2.088;VQSLOD=4.62;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1772,156,0
chr5	149294272	rs30828	C	T	1373.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.61;SOR=5.784;VQSLOD=21.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:228,18,0
chr5	149294595	.	CTTT	C,CT	1520.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-2.030e-01;DP=16;ExcessHet=3.0103;FS=2.387;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.33;ReadPosRankSum=0.459;SOR=0.306;VQSLOD=7.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,4,11:16:20:399,193,222,38,0,20
chr5	149301335	rs11167487	T	C	683.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.860e-01;DB;DP=15;ExcessHet=3.9794;FS=3.230;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=1.23;SOR=0.245;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,3:15:44:44,0,317
chr5	149310447	rs3756305	A	G	325.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.36;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=2.44;SOR=1.214;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:150,0,171
chr5	149323772	rs2277926	G	A	2248.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.218e+00;DB;DP=94;ExcessHet=3.9794;FS=3.634;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=1.00;SOR=0.446;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,44:94:99:1083,0,1335
chr5	149323906	rs2277925	T	G	3633.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.640e-01;DB;DP=131;ExcessHet=3.9794;FS=1.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.95;ReadPosRankSum=0.780;SOR=0.578;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,70:131:99:1736,0,1545
chr5	149324376	rs2277924	A	T	705.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.550e-01;DB;DP=13;ExcessHet=1.5490;FS=1.987;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-1.446e+00;SOR=1.347;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:124,0,278
chr5	149360877	rs30832	T	C	10846.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.58;SOR=0.918;VQSLOD=20.53;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3266,299,0
chr5	149374879	rs3832324	CT	C	10596.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.41;DB;DP=153;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=0.539;SOR=0.713;VQSLOD=7.49;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,153:153:99:5719,461,0
chr5	149374932	rs10875553	T	C	7590.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.190e-01;DB;DP=133;ExcessHet=3.9794;FS=0.552;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.42;ReadPosRankSum=-4.400e-02;SOR=0.787;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4319,399,0
chr5	149380158	rs3812008	C	T	15465.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=344;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.12;SOR=0.842;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,344:344:99:1|1:149380158_C_T:15482,1044,0:149380158
chr5	149380159	rs3812009	G	C	33172.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.33;DB;DP=347;ExcessHet=3.0103;FS=0.776;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.63;ReadPosRankSum=-2.070e-01;SOR=0.829;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,347:347:99:1|1:149380158_C_T:15482,1044,0:149380158
chr5	149384680	rs6861548	A	G	604.45	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.83;ReadPosRankSum=0.00;SOR=2.712;VQSLOD=21.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr5	149389465	rs1864998	C	T	529.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DB;DP=10;ExcessHet=1.5490;FS=6.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.42;ReadPosRankSum=2.03;SOR=4.047;VQSLOD=13.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:406,30,0
chr5	149398480	rs7720470	A	G	151.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.48;SOR=3.258;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr5	149406271	rs6579767	C	T	7307.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.888;DB;DP=97;ExcessHet=3.0103;FS=2.225;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=0.482;SOR=0.492;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,95:97:99:2767,241,0
chr5	149406733	rs2304069	G	T	2445.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.85;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=0.00;SOR=0.841;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1178,93,0
chr5	149421847	rs13183261	T	G	74.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=2.303;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr5	149424966	rs2276983	G	A	11298.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.151;DB;DP=130;ExcessHet=3.0103;FS=0.824;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=0.322;SOR=0.636;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4129,390,0
chr5	149427010	rs2569204	G	C	451.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.56;SOR=4.977;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	149427387	rs2043284	T	G	12414.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.19;SOR=1.264;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3876,347,0
chr5	149428395	rs216125	C	G	791.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.292e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.33;ReadPosRankSum=0.135;SOR=0.527;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:285,24,0
chr5	149428424	rs216126	G	C	266.87	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=3;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.79;ReadPosRankSum=-4.310e-01;SOR=0.818;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr5	149431223	rs216131	G	A	4720.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.92;DB;DP=39;ExcessHet=3.0103;FS=1.144;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.96;ReadPosRankSum=0.514;SOR=0.538;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1446,117,0
chr5	149431259	rs216132	A	G	7258.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.32;DB;DP=84;ExcessHet=3.0103;FS=2.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.59;ReadPosRankSum=1.05;SOR=0.921;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2611,251,0
chr5	149433596	rs2066934	T	G	10918.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=2.016;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,88:88:99:1|1:149433596_T_G:3985,268,0:149433596
chr5	149433597	rs2066933	G	A	10918.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.63;SOR=1.991;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,89:89:99:1|1:149433596_T_G:3985,268,0:149433596
chr5	149434954	rs72832135	C	T	804.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=64;ExcessHet=3.0103;FS=3.708;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.57;ReadPosRankSum=-5.110e-01;SOR=1.293;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,30:64:99:813,0,866
chr5	149435759	rs216136	G	A	8690.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.530e-01;DB;DP=200;ExcessHet=1.5490;FS=0.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.35;ReadPosRankSum=0.699;SOR=0.569;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:3,197:200:99:6075,504,0
chr5	149437190	rs216138	C	G	5473.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.768e+00;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.58;ReadPosRankSum=-4.990e-01;SOR=1.051;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,58:59:99:1771,134,0
chr5	149439044	rs2027798	C	T	1578.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.621e+00;DB;DP=35;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.92;ReadPosRankSum=-6.000e-02;SOR=0.580;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,35:35:99:1|1:149439020_T_C:1128,103,0:149439020
chr5	149439588	rs6866298	T	C	870.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.95;SOR=4.712;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:268,21,0
chr5	149440644	rs170037	C	T	4082.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.490e+00;DB;DP=71;ExcessHet=3.9794;FS=4.117;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.82;ReadPosRankSum=-4.530e-01;SOR=0.430;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,70:71:99:2375,171,0
chr5	149440723	rs216139	G	A	333.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.718e+00;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.87;ReadPosRankSum=-6.520e-01;SOR=0.430;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:297,27,0
chr5	149441016	rs11286566	AC	A	626.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.710e-01;DB;DP=14;ExcessHet=1.5490;FS=9.171;MQ=59.52;MQRankSum=0.959;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=0.826;SOR=2.452;VQSLOD=0.401;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,14:14:42:445,42,0
chr5	149447628	rs216150	A	G	3727.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=27.37;SOR=2.442;VQSLOD=3.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:878,72,0
chr5	149450132	rs10079250	T	C	2139.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.100e-01;DB;DP=81;ExcessHet=3.9794;FS=1.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.89;ReadPosRankSum=0.135;SOR=0.587;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,34:81:99:741,0,1186
chr5	149452793	rs10044553	C	T	1252.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.800e-01;DB;DP=41;ExcessHet=3.9794;FS=2.853;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.443;SOR=0.437;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:549,0,537
chr5	149456771	rs2855781	C	A	5796.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.318;DB;DP=102;ExcessHet=1.5490;FS=0.593;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.42;ReadPosRankSum=1.40;SOR=0.609;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,42:102:99:0|1:149456771_C_A:1594,0,3573:149456771
chr5	149456772	rs60844779	T	A	5796.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.862;DB;DP=103;ExcessHet=1.5490;FS=1.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.14;ReadPosRankSum=1.24;SOR=0.573;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:60,43:103:99:0|1:149456771_C_A:1594,0,3573:149456771
chr5	149457678	rs2228422	G	A	10409.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.582e+00;DB;DP=236;ExcessHet=3.9794;FS=1.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.34;ReadPosRankSum=0.690;SOR=0.574;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:119,117:236:99:2815,0,3025
chr5	149460176	rs1986027	G	A	254.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.450e-01;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.59;ReadPosRankSum=-3.520e-01;SOR=0.892;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:263,0,392
chr5	149460553	rs216123	A	G	3756.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-02;DB;DP=150;ExcessHet=3.9794;FS=1.445;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.963;SOR=0.808;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,82:150:99:2129,0,1679
chr5	149497107	.	G	A,GCA	1062.89	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.657;DP=26;ExcessHet=3.0103;FS=2.526;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.61;ReadPosRankSum=1.84;SOR=0.330;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:3,7,16:26:99:718,388,496,136,0,242
chr5	149509270	rs1864972	A	G	2303.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.52;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.91;ReadPosRankSum=0.082;SOR=1.329;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:322,0,353
chr5	149509446	rs41287110	C	T	2496.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.238;DB;DP=206;ExcessHet=3.0103;FS=0.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=1.32;SOR=0.630;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,101:206:99:2505,0,2563
chr5	149513072	rs2240780	A	G	3833.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.707e+00;DB;DP=49;ExcessHet=3.9794;FS=0.974;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.11;ReadPosRankSum=-8.840e-01;SOR=0.536;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,30:49:99:843,0,514
chr5	149514958	rs758589	T	G	2500.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=2.082;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:726,66,0
chr5	149515074	rs740750	G	A	3213.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.470e-01;DB;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.72;ReadPosRankSum=0.624;SOR=0.698;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,24:43:99:621,0,466
chr5	149516480	rs2240781	C	T	6892.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=106;ExcessHet=3.9794;FS=4.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.58;ReadPosRankSum=-4.800e-02;SOR=0.460;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,56:106:99:1434,0,1374
chr5	149546426	rs2302274	A	G	3470.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.794;DB;DP=112;ExcessHet=6.9897;FS=0.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-1.570e-01;SOR=0.651;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,49:112:99:1083,0,1570
chr5	149546828	rs2302275	C	G	656.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=13;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.98;ReadPosRankSum=-7.610e-01;SOR=0.487;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:130,0,277
chr5	149576233	rs2270145	G	A	922.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022e+00;DB;DP=83;ExcessHet=3.0103;FS=1.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.11;ReadPosRankSum=2.24;SOR=0.944;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,32:83:99:931,0,1518
chr5	149576273	rs2270146	C	T	3334.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=153;ExcessHet=3.9794;FS=3.482;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=-1.263e+00;SOR=0.913;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,69:153:99:1728,0,2183
chr5	149578999	rs731376	T	A	2505.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.125e+00;DB;DP=56;ExcessHet=6.9897;FS=7.673;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.750;SOR=1.410;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,19:56:99:511,0,1068
chr5	149580819	rs3733680	G	A	2917.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.68;DB;DP=87;ExcessHet=3.9794;FS=4.495;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=0.953;SOR=1.053;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,41:87:99:1090,0,1155
chr5	149581731	rs2240786	C	G	231.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.760e-01;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.60;ReadPosRankSum=-3.660e-01;SOR=0.593;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:47:47,0,226
chr5	149582103	rs2240788	C	T	3824.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.341e+00;DB;DP=163;ExcessHet=3.9794;FS=8.248;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.66;ReadPosRankSum=0.589;SOR=0.679;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,74:163:99:1800,0,2444
chr5	149582375	rs2240789	T	C	473.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.559e+00;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.79;ReadPosRankSum=1.23;SOR=1.287;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,11:21:99:348,0,304
chr5	149583300	rs2240793	T	C	4905.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=164;ExcessHet=3.9794;FS=0.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.14;ReadPosRankSum=0.147;SOR=0.734;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:96,68:164:99:0|1:149583300_T_C:2410,0,3385:149583300
chr5	149583336	rs2240794	T	C	4815.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=150;ExcessHet=3.9794;FS=0.878;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=-8.520e-01;SOR=0.715;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:82,68:150:99:0|1:149583300_T_C:2465,0,3071:149583300
chr5	149583383	rs35380195	G	GGTGT	3143.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.320;DB;DP=61;ExcessHet=3.9794;FS=0.000;MQ=59.63;MQRankSum=-3.400e-01;QD=17.18;ReadPosRankSum=0.070;SOR=0.653;VQSLOD=0.698;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,19:61:99:718,0,845
chr5	149584341	rs6878880	T	C	4048.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=43;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.60;SOR=0.978;VQSLOD=20.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1414,129,0
chr5	149584796	rs2342278	A	C	1424.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.62;SOR=3.056;VQSLOD=18.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:149584796_A_C:448,30,0:149584796
chr5	149584797	rs5872164	T	TG	1424.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.13;SOR=3.056;VQSLOD=6.46;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,10:10:30:1|1:149584796_A_C:448,30,0:149584796
chr5	149584802	rs2342279	T	G	1381.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.14;SOR=3.477;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:149584796_A_C:405,27,0:149584796
chr5	149584803	rs2880320	G	C	1381.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.35;SOR=3.477;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,9:9:27:1|1:149584796_A_C:405,27,0:149584796
chr5	149584831	rs2342280	A	G	1786.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=30.99;SOR=3.611;VQSLOD=18.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:149584831_A_G:585,39,0:149584831
chr5	149584834	rs2342281	A	C	1831.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.31;SOR=3.611;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:42:1|1:149584831_A_G:630,42,0:149584831
chr5	149584844	rs5872165	T	TG	2146.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.24;SOR=3.958;VQSLOD=6.07;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:149584831_A_G:720,48,0:149584831
chr5	149584847	rs2342282	A	G	2236.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.93;SOR=4.003;VQSLOD=19.49;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:51:1|1:149584831_A_G:765,51,0:149584831
chr5	149584851	rs5872166	T	TG	2416.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.05;SOR=3.745;VQSLOD=6.22;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:54:1|1:149584831_A_G:810,54,0:149584831
chr5	149584863	rs2342283	A	G	2596.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=22.11;SOR=4.294;VQSLOD=18.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:51:1|1:149584831_A_G:765,51,0:149584831
chr5	149584870	rs4423986	C	A	2686.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.90;SOR=4.479;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:54:1|1:149584831_A_G:810,54,0:149584831
chr5	149584881	rs5024534	G	T	3156.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.52;SOR=4.375;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:66:1|1:149584831_A_G:963,66,0:149584831
chr5	149584883	rs5024533	T	C	3111.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=28.35;SOR=4.205;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,22:22:66:1|1:149584831_A_G:963,66,0:149584831
chr5	149584969	rs11428067	A	AG	8399.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=78;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.50;SOR=2.051;VQSLOD=5.59;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,78:78:99:2884,234,0
chr5	149584981	rs4705425	A	G	2114.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.890e-01;DB;DP=87;ExcessHet=3.9794;FS=7.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.79;ReadPosRankSum=1.56;SOR=0.340;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,48:87:99:1159,0,936
chr5	149585025	rs4705426	A	C	13719.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.56;SOR=1.048;VQSLOD=20.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,145:145:99:4351,434,0
chr5	149596955	rs980272	C	T	680.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.41;DB;DP=39;ExcessHet=3.0103;FS=3.330;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.44;ReadPosRankSum=-1.367e+00;SOR=1.560;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,21:39:99:689,0,447
chr5	149597160	rs882354	A	G	4591.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=115;ExcessHet=6.9897;FS=0.402;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=-3.920e-01;SOR=0.719;VQSLOD=6.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,54:115:99:1445,0,1552
chr5	149597304	rs5872169	G	GT	1246.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.107e+00;DB;DP=28;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.17;ReadPosRankSum=0.591;SOR=0.606;VQSLOD=7.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,9:28:99:305,0,678
chr5	149601932	rs5872172	C	CA	582.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.900e-01;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.95;ReadPosRankSum=0.469;SOR=0.379;VQSLOD=7.33;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:10:99:132,0,213
chr5	149602280	rs55976097	T	C	1325.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.35;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=1.50;SOR=0.625;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,46:114:99:1334,0,1894
chr5	149602363	rs17712679	T	A	608.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.75;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-5.280e-01;SOR=0.627;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:617,0,627
chr5	149602608	rs2241694	A	G	17846.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=193;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.40;SOR=0.782;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,193:193:99:5640,579,0
chr5	149602824	rs2241695	C	T	1604.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.985e+00;DB;DP=27;ExcessHet=6.9897;FS=1.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.43;ReadPosRankSum=0.165;SOR=0.441;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,11:27:99:306,0,576
chr5	149610967	.	AAATAAT	A	624.92	PASS	AC=2;AF=1.00;AN=2;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.17;SOR=4.174;VQSLOD=6.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:7:91,7,0
chr5	149624901	rs34649296	G	GCCT	1077.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.106;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.85;ReadPosRankSum=-3.300e-02;SOR=0.636;VQSLOD=6.04;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,10:22:99:348,0,441
chr5	149627423	rs7711562	A	G	1403.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.252;DB;DP=50;ExcessHet=3.9794;FS=1.609;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.88;SOR=0.511;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,30:50:99:772,0,453
chr5	149629683	rs4958452	T	C	441.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.500e-02;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.03;ReadPosRankSum=0.332;SOR=0.610;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,19:44:99:450,0,630
chr5	149631014	rs3836835	G	GA	124.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.70;ReadPosRankSum=0.00;SOR=0.368;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:62:62,0,63
chr5	149631413	rs2288799	A	G	2455.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.15;DB;DP=53;ExcessHet=6.9897;FS=0.553;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=-3.950e-01;SOR=0.609;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:715,0,757
chr5	149636073	rs10463293	T	G	765.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.68;ReadPosRankSum=0.063;SOR=0.741;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,7:17:99:254,0,320
chr5	149636109	rs10463294	G	A	330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DB;DP=28;ExcessHet=3.0103;FS=8.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.79;ReadPosRankSum=-1.650e-01;SOR=2.964;VQSLOD=14.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,11:28:99:339,0,514
chr5	149644597	rs891938	T	G	7598.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=82;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.20;SOR=0.727;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,82:82:99:2635,246,0
chr5	149644807	rs2304042	G	A	39.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.55;ReadPosRankSum=1.28;SOR=0.307;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:48:48,0,148
chr5	149677851	rs6579784	A	G	16961.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.393e+00;DB;DP=190;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.49;ReadPosRankSum=-1.156e+00;SOR=0.112;VQSLOD=6.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,190:190:99:5961,570,0
chr5	149678296	rs6579785	A	G	2878.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.369e+00;DB;DP=44;ExcessHet=3.0103;FS=4.587;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=2.06;SOR=0.285;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1430,132,0
chr5	149678325	rs6579786	A	G	2751.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.59;SOR=3.145;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1053,93,0
chr5	149737221	rs4565199	T	G	1386.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=35.00;SOR=3.737;VQSLOD=19.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:318,27,0
chr5	149772280	rs1136103	C	G	1090.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.054e+00;DB;DP=99;ExcessHet=3.0103;FS=2.750;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.01;ReadPosRankSum=1.27;SOR=0.422;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,47:99:99:1099,0,1325
chr5	149901373	rs10075355	G	C	4024.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080e-01;DB;DP=78;ExcessHet=6.9897;FS=3.242;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=0.206;SOR=0.489;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,42:78:99:1272,0,1122
chr5	149907533	rs2273235	T	G	4850.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.467;DB;DP=201;ExcessHet=3.9794;FS=2.493;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=-2.700e-02;SOR=0.541;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,88:201:99:2348,0,3192
chr5	149907602	rs2273234	A	G	6185.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.000e-01;DB;DP=249;ExcessHet=3.9794;FS=2.487;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.78;ReadPosRankSum=-5.600e-01;SOR=0.537;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:128,121:249:99:3129,0,3280
chr5	149912762	rs2273229	A	G	228.86	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=11;ExcessHet=4.7712;FS=4.973;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=2.09;SOR=0.047;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:138,0,248
chr5	149914401	rs2545341	T	C	4823.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=74;ExcessHet=3.9794;FS=0.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.44;ReadPosRankSum=-5.400e-02;SOR=0.653;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,37:74:99:975,0,1004
chr5	149919739	rs1290147	G	C	5621.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=106;ExcessHet=3.9794;FS=1.966;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.57;ReadPosRankSum=0.312;SOR=0.817;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,51:106:99:1233,0,1328
chr5	149921251	rs2304063	G	C	3189.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=73;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-1.878e+00;SOR=0.664;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,32:73:99:914,0,1160
chr5	149931222	rs6579792	T	G	1181.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.40;SOR=6.736;VQSLOD=21.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:540,39,0
chr5	149932602	rs6893285	C	T	1709.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.599;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.20;ReadPosRankSum=-5.140e-01;SOR=1.647;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:410,33,0
chr5	149998598	.	TA	T	118.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=4.40;ReadPosRankSum=0.389;SOR=1.179;VQSLOD=5.31;culprit=QD	GT:AD:DP:GQ:PL	0/1:5,3:8:55:55,0,106
chr5	150050448	.	CA	C	424.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.73;DP=15;ExcessHet=3.0103;FS=1.774;MQ=59.90;MQRankSum=-2.300e-01;POSITIVE_TRAIN_SITE;QD=14.63;ReadPosRankSum=1.59;SOR=1.371;VQSLOD=1.19;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,5:15:38:111,0,38
chr5	150051958	rs194134	T	C	35832.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=410;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=0.845;VQSLOD=21.04;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,410:410:99:12700,1229,0
chr5	150056105	.	CA	C	41.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.190e-01;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.42;ReadPosRankSum=0.319;SOR=1.609;VQSLOD=5.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,3:4:8:49,0,8
chr5	150072693	rs33410	A	G	1870.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.110e-01;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.92;ReadPosRankSum=0.735;SOR=0.735;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:252,0,282
chr5	150078956	rs252161	A	G	601.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.07;ReadPosRankSum=0.529;SOR=0.693;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,25:46:99:610,0,432
chr5	150098028	rs41290555	G	A	351.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.269e+00;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.64;ReadPosRankSum=0.068;SOR=0.884;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,17:46:99:360,0,790
chr5	150110239	rs35772018	T	C	1957.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-1.312e+00;SOR=0.747;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,74:148:99:1966,0,1728
chr5	150121458	rs114136906	G	C	137.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.88;ReadPosRankSum=-1.111e+00;SOR=1.609;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:146,0,67
chr5	150136201	rs35101821	G	GT	404.43	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=-3.190e-01;SOR=3.611;VQSLOD=5.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,8:8:24:212,24,0
chr5	150407456	rs8177447	T	C	5054.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=96;ExcessHet=1.5490;FS=2.585;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.15;ReadPosRankSum=-6.700e-02;SOR=0.902;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,96:96:99:3024,288,0
chr5	150409348	rs736775	T	C	501.24	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=3.767;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:518,39,0
chr5	150410135	rs3924	G	A	226.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.30;SOR=2.584;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:243,21,0
chr5	150413406	rs2233305	A	C	918.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.62;DB;DP=16;ExcessHet=1.5490;FS=4.689;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.26;ReadPosRankSum=0.572;SOR=2.068;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:589,48,0
chr5	150414388	rs11747926	A	G	1028.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.34;DB;DP=23;ExcessHet=1.5490;FS=6.180;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=-7.470e-01;SOR=0.148;VQSLOD=22.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:746,69,0
chr5	150414945	rs11748040	A	G	764.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=6;ExcessHet=3.0103;FS=3.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.76;ReadPosRankSum=0.253;SOR=2.200;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:242,18,0
chr5	150414960	rs11748041	A	C	400.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.05;ReadPosRankSum=1.44;SOR=2.049;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:256,21,0
chr5	150415338	rs2287720	C	T	1163.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=33;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=21.58;SOR=3.193;VQSLOD=19.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:97:1180,97,0
chr5	150415477	rs7727034	C	G	181.61	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.26;SOR=3.611;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr5	150422765	rs4958876	A	C	2299.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.33;SOR=3.040;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1184,108,0
chr5	150425467	rs2233299	G	A	2546.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.586e+00;DB;DP=235;ExcessHet=3.0103;FS=3.621;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=0.721;SOR=0.869;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:118,117:235:99:2555,0,2759
chr5	150429563	rs2233294	A	C	988.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=63;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-1.410e+00;SOR=0.711;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,37:63:99:997,0,646
chr5	150432153	rs2112635	C	T	332.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.68;ReadPosRankSum=0.842;SOR=1.981;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,113
chr5	150484889	rs868531	G	A	437.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.974;DB;DP=42;ExcessHet=3.0103;FS=1.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.41;ReadPosRankSum=0.013;SOR=1.085;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,16:42:99:446,0,780
chr5	150487723	.	GGT	G	34.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.840e-01;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=2.85;ReadPosRankSum=1.93;SOR=0.223;VQSLOD=4.90;culprit=QD	GT:AD:DP:GQ:PL	0/1:10,2:12:43:43,0,355
chr5	150489390	rs1133202	A	G	6271.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=92;ExcessHet=3.0103;FS=6.103;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=0.641;SOR=0.705;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,90:92:99:2633,227,0
chr5	150489609	rs2303020	C	G	414.76	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.03;ReadPosRankSum=0.842;SOR=0.776;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr5	150498981	rs2303022	C	G	1721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DB;DP=69;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.34;ReadPosRankSum=-8.900e-02;SOR=0.757;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,36:69:99:906,0,813
chr5	150499080	rs2303023	T	C	1699.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.051;DB;DP=26;ExcessHet=3.9794;FS=1.085;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.99;ReadPosRankSum=-6.980e-01;SOR=0.513;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:894,78,0
chr5	150499102	rs2303024	A	G	1259.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.50;ReadPosRankSum=-4.960e-01;SOR=0.610;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:605,48,0
chr5	150503606	rs3815721	T	G	304.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.9794;FS=6.245;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=0.431;SOR=0.051;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:66:133,0,66
chr5	150503675	rs2303025	T	C	708.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.399;DB;DP=17;ExcessHet=3.9794;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.16;ReadPosRankSum=2.05;SOR=0.368;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,12:17:99:336,0,129
chr5	150503784	rs2303027	C	T	1542.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.947;DB;DP=55;ExcessHet=3.9794;FS=1.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.54;ReadPosRankSum=0.406;SOR=0.887;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,29:55:99:726,0,637
chr5	150504097	rs56708608	TGAGAGAGAGA	T	1024.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.960e-01;DB;DP=27;ExcessHet=6.9897;FS=7.805;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-1.270e-01;SOR=2.038;VQSLOD=5.45;culprit=FS	GT:AD:DP:GQ:PL	0/1:8,17:27:99:675,0,652
chr5	150505794	rs2303028	G	A	441.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.66;DB;DP=19;ExcessHet=3.9794;FS=6.532;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.75;ReadPosRankSum=-8.200e-02;SOR=3.258;VQSLOD=16.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:270,0,239
chr5	150506104	rs111270752	AACACACACAC	A	1275.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=20;ExcessHet=6.9897;FS=6.897;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.01;ReadPosRankSum=-8.300e-02;SOR=2.209;VQSLOD=6.03;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,9:20:99:354,0,445
chr5	150509258	rs144537590	T	TTTTGTTTG	359.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=36.34;SOR=4.615;VQSLOD=4.99;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr5	150512589	rs146823252	G	GAAAAT	1927.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=57;ExcessHet=3.9794;FS=5.917;MQ=60.00;MQRankSum=0.00;QD=15.42;ReadPosRankSum=-5.500e-02;SOR=1.264;VQSLOD=5.17;culprit=FS	GT:AD:DP:GQ:PL	0/1:37,20:57:99:717,0,2367
chr5	150516770	rs371165306	C	T	1228.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.659;DB;DP=98;ExcessHet=3.0103;FS=3.780;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=0.615;SOR=0.927;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,49:98:99:1237,0,1194
chr5	150517025	rs9324679	C	G	770.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=13;ExcessHet=3.9794;FS=7.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.03;ReadPosRankSum=0.075;SOR=3.056;VQSLOD=17.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,4:13:99:131,0,279
chr5	150518358	rs3213802	A	G	6301.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.340e-01;DB;DP=87;ExcessHet=6.9897;FS=2.294;MQ=60.00;MQRankSum=0.00;QD=18.06;ReadPosRankSum=0.576;SOR=0.581;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,48:87:99:0|1:150518358_A_G:1867,0,1705:150518358
chr5	150518359	rs3213803	G	A	6301.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.370e-01;DB;DP=86;ExcessHet=6.9897;FS=2.312;MQ=60.00;MQRankSum=0.00;QD=18.27;ReadPosRankSum=0.712;SOR=0.576;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,47:86:99:0|1:150518358_A_G:1867,0,1705:150518358
chr5	150518392	rs144973641	G	GGAA	2451.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.130e-01;DB;DP=57;ExcessHet=3.9794;FS=3.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-5.450e-01;SOR=0.443;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,30:57:99:1191,0,1146
chr5	150518435	rs3213804	T	G	1242.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=37;ExcessHet=3.9794;FS=1.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-1.475e+00;SOR=0.523;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:604,0,532
chr5	150518532	rs3815725	A	G	865.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.219e+00;DB;DP=11;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=-3.890e-01;SOR=1.075;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:96:296,0,96
chr5	150518725	rs45534934	C	T	361.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.08;DB;DP=10;ExcessHet=3.9794;FS=2.231;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.89;ReadPosRankSum=-5.110e-01;SOR=1.609;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:129,0,177
chr5	150518892	rs3214444	GC	G	3055.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=99;ExcessHet=3.9794;FS=0.477;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.62;ReadPosRankSum=0.872;SOR=0.737;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:54,45:99:99:1309,0,1623
chr5	150518988	rs2228458	G	A	3118.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.780e-01;DB;DP=112;ExcessHet=3.9794;FS=0.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.04;ReadPosRankSum=0.882;SOR=0.637;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,55:112:99:1412,0,1524
chr5	150562696	rs60344552	CT	C	7525.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.781e+00;DB;DP=130;ExcessHet=1.5490;FS=5.550;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=-3.900e-02;SOR=0.756;VQSLOD=6.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,130:130:99:5158,391,0
chr5	150563302	rs12518395	G	T	203.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.84;SOR=2.303;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:219,18,0
chr5	150564059	rs67145573	C	T	977.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.350e-01;DB;DP=90;ExcessHet=3.0103;FS=2.724;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.86;ReadPosRankSum=0.040;SOR=0.910;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,43:90:99:986,0,1112
chr5	150564975	rs248428	T	C	2975.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.593;DB;DP=66;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.72;ReadPosRankSum=-7.150e-01;SOR=0.631;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,30:66:99:723,0,904
chr5	150565008	rs248427	C	T	4085.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.151;DB;DP=80;ExcessHet=1.5490;FS=2.409;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.03;ReadPosRankSum=1.67;SOR=0.962;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,40:80:99:979,0,989
chr5	150565276	rs168699	G	A	3033.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.774e+00;DB;DP=35;ExcessHet=3.9794;FS=3.981;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.28;ReadPosRankSum=0.124;SOR=0.333;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,24:35:99:704,0,329
chr5	150565724	rs248426	C	T	5265.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.038e+00;DB;DP=103;ExcessHet=1.5490;FS=0.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.13;ReadPosRankSum=-1.260e-01;SOR=0.618;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,48:103:99:1094,0,1488
chr5	150565770	rs193728	G	A	7692.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=89;ExcessHet=3.0103;FS=0.665;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.57;ReadPosRankSum=-2.700e-02;SOR=0.642;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2844,267,0
chr5	150566089	rs148067529	C	T	103.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.50;SOR=1.179;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:118,9,0
chr5	150566792	rs448503	T	C	309.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.37;ReadPosRankSum=-3.190e-01;SOR=3.056;VQSLOD=19.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:30:111,0,30
chr5	150567017	rs61745454	A	G	371.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=56;ExcessHet=3.0103;FS=1.124;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.63;ReadPosRankSum=-1.462e+00;SOR=0.999;VQSLOD=21.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,17:56:99:380,0,917
chr5	150567049	rs35221501	CA	C	5136.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.241;DB;DP=53;ExcessHet=3.0103;FS=0.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=-8.680e-01;SOR=0.698;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1983,160,0
chr5	150567074	rs36036156	T	TG	3561.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.628;DB;DP=52;ExcessHet=3.9794;FS=2.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=0.399;SOR=0.950;VQSLOD=7.44;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,19:52:99:551,0,1079
chr5	150567145	rs454130	G	A	908.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.587;DB;DP=33;ExcessHet=3.9794;FS=3.630;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.35;ReadPosRankSum=1.01;SOR=0.331;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,18:33:99:485,0,384
chr5	150578574	rs3734038	A	G	956.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.640e-01;DB;DP=99;ExcessHet=3.0103;FS=0.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.66;ReadPosRankSum=0.644;SOR=0.853;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,42:99:99:965,0,1422
chr5	150595073	rs979453	A	G	1039.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=13;ExcessHet=6.9897;FS=1.779;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.52;ReadPosRankSum=0.243;SOR=0.363;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,8:13:99:295,0,162
chr5	150603444	rs248461	C	G	802.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.579e+00;DB;DP=126;ExcessHet=3.0103;FS=0.740;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.37;ReadPosRankSum=1.86;SOR=0.816;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,39:126:99:811,0,2520
chr5	150632676	rs2277028	A	G	123.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.80;ReadPosRankSum=1.27;SOR=0.693;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:132,0,339
chr5	150633108	rs41290575	C	A	105.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.53;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.52;ReadPosRankSum=-4.980e-01;SOR=0.188;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:114,0,337
chr5	150639224	rs153476	T	A	1462.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=7.276;VQSLOD=23.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:329,27,0
chr5	150639409	rs153477	A	G	8190.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.840e-01;DB;DP=98;ExcessHet=3.0103;FS=1.134;MQ=59.97;MQRankSum=-1.121e+00;POSITIVE_TRAIN_SITE;QD=24.31;ReadPosRankSum=0.681;SOR=0.597;VQSLOD=2.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,98:98:99:2973,294,0
chr5	150639439	rs153478	A	G	10019.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.21;SOR=0.804;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:2974,291,0
chr5	150646647	rs2075782	T	C	1208.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.766e+00;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.98;ReadPosRankSum=0.812;SOR=0.653;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,49:110:99:1217,0,1732
chr5	150646736	rs6861766	C	T	1694.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.200e-01;DB;DP=163;ExcessHet=3.0103;FS=0.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.39;ReadPosRankSum=0.114;SOR=0.642;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,70:163:99:1703,0,2492
chr5	150646780	rs2075783	A	C	2262.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=190;ExcessHet=3.0103;FS=0.534;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.91;ReadPosRankSum=0.389;SOR=0.641;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:102,88:190:99:2271,0,2648
chr5	150646888	rs61740602	T	C	5129.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.81;DB;DP=221;ExcessHet=3.9794;FS=0.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.15;ReadPosRankSum=-9.600e-01;SOR=0.737;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:106,115:221:99:3063,0,2312
chr5	150647012	rs1048723	A	G	1514.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.62;DB;DP=154;ExcessHet=3.0103;FS=1.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.83;ReadPosRankSum=1.48;SOR=0.819;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,58:154:99:1523,0,2590
chr5	150647239	rs989	A	G	1966.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.980e-01;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.73;ReadPosRankSum=-2.890e-01;SOR=0.620;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:459,0,223
chr5	150660769	rs1368393	A	G	4552.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.46;DB;DP=79;ExcessHet=6.9897;FS=5.198;MQ=59.96;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=-8.670e-01;SOR=0.995;VQSLOD=7.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:49,30:79:99:0|1:150660769_A_G:1028,0,2495:150660769
chr5	150660794	rs1368394	G	A	3838.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.259e+00;DB;DP=62;ExcessHet=6.9897;FS=1.165;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.61;ReadPosRankSum=0.304;SOR=0.828;VQSLOD=6.79;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,23:62:99:0|1:150660769_A_G:837,0,2305:150660769
chr5	150663565	rs1347147	A	C	276.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=8;ExcessHet=6.9897;FS=2.688;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.26;ReadPosRankSum=0.992;SOR=1.414;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:97:174,0,97
chr5	150667016	rs978012	T	C	2240.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=47;ExcessHet=6.9897;FS=1.263;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.26;ReadPosRankSum=-1.130e-01;SOR=0.816;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,21:47:99:588,0,685
chr5	150667195	rs373671	A	G	200.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.40;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=1.04;SOR=1.863;VQSLOD=0.655;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:66:104,0,66
chr5	150667771	rs246499	G	A	1466.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.86;ReadPosRankSum=0.291;SOR=0.956;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:48:267,0,48
chr5	150668649	rs10071719	T	C	252.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=5;ExcessHet=3.9794;FS=2.447;MQ=59.39;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.85;ReadPosRankSum=1.28;SOR=0.799;VQSLOD=0.345;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:25:93,0,25
chr5	150668692	rs17716431	A	G	183.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=1.28;SOR=1.179;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:134,12,0
chr5	150677976	rs2431072	T	C	1328.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.32;DB;DP=13;ExcessHet=3.9794;FS=2.521;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=0.988;SOR=0.338;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,9:13:99:270,0,122
chr5	150682975	rs6887412	T	C	4126.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.323e+00;DB;DP=108;ExcessHet=6.9897;FS=3.928;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-9.880e-01;SOR=0.925;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,49:108:99:1255,0,1572
chr5	150683005	rs28481793	T	C	2918.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.207e+00;DB;DP=74;ExcessHet=6.9897;FS=2.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=-8.900e-01;SOR=0.907;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,32:74:99:766,0,1229
chr5	150683055	rs6866481	G	A	1144.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.022e+00;DB;DP=33;ExcessHet=3.9794;FS=7.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=1.43;SOR=0.092;VQSLOD=21.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,14:33:99:395,0,681
chr5	150696301	.	CA	C	86.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DP=6;ExcessHet=6.9897;FS=1.983;MQ=59.38;MQRankSum=0.431;POSITIVE_TRAIN_SITE;QD=3.22;ReadPosRankSum=-4.930e-01;SOR=1.270;VQSLOD=1.04;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,2:6:26:26,0,53
chr5	150696447	rs369907	C	T	2999.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.97;DB;DP=92;ExcessHet=1.5490;FS=1.301;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.63;ReadPosRankSum=0.840;SOR=0.818;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,37:92:99:869,0,1247
chr5	150696498	rs428064	G	A	754.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.72;DB;DP=61;ExcessHet=3.0103;FS=2.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=1.37;SOR=0.382;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,27:61:99:763,0,916
chr5	150696540	rs431240	C	T	2194.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.43;DB;DP=45;ExcessHet=1.5490;FS=1.834;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.63;ReadPosRankSum=-1.270e-01;SOR=0.926;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,18:45:99:508,0,795
chr5	150704724	rs246497	T	C	512.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.560e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.601;SOR=1.721;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:92:92,0,211
chr5	150704758	rs246496	A	G	780.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.316e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.03;ReadPosRankSum=-6.990e-01;SOR=0.788;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:162,0,204
chr5	150712334	rs246487	A	T	189.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,107
chr5	150718874	rs2431080	C	A	97.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.489;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=0.135;SOR=1.270;VQSLOD=1.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,3:8:99:105,0,121
chr5	150722675	rs2431079	G	A	459.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.800e-02;DB;DP=22;ExcessHet=3.0103;FS=1.978;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.88;ReadPosRankSum=1.18;SOR=0.368;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,16:22:99:468,0,148
chr5	150722974	rs111787238	A	G	722.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.51;DB;DP=53;ExcessHet=3.0103;FS=2.712;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.63;ReadPosRankSum=0.499;SOR=1.179;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:731,0,773
chr5	150723806	rs192192	G	A	7293.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.16;DB;DP=175;ExcessHet=1.5490;FS=1.957;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=-5.760e-01;SOR=0.823;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:100,75:175:99:1667,0,2209
chr5	150724113	rs185017	A	T	1355.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.170e-01;DB;DP=25;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.65;ReadPosRankSum=0.247;SOR=0.709;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:400,0,283
chr5	150838284	rs35256722	C	G	1988.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.101e+00;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.72;ReadPosRankSum=1.28;SOR=1.296;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,9:17:99:0|1:150838284_C_G:346,0,563:150838284
chr5	150838293	rs35074529	T	C	2286.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.464e+00;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=59.73;MQRankSum=-9.490e-01;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=1.92;SOR=0.602;VQSLOD=0.452;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,9:19:99:0|1:150838284_C_G:373,0,636:150838284
chr5	150838603	rs56026426	A	C	514.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.347e+00;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.29;ReadPosRankSum=-1.061e+00;SOR=0.811;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,23:50:99:523,0,719
chr5	150843996	rs415426	T	C	4104.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=92;ExcessHet=1.5490;FS=1.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.06;ReadPosRankSum=1.76;SOR=0.909;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,48:92:99:1235,0,1018
chr5	150885788	rs165339	G	T	56.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.10;ReadPosRankSum=0.00;SOR=0.693;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:65:65,0,71
chr5	150886519	rs7722485	A	G	1750.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.201;DB;DP=34;ExcessHet=6.9897;FS=0.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.36;ReadPosRankSum=-7.270e-01;SOR=0.588;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:351,0,592
chr5	150886616	rs7723079	G	A	7052.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=84;ExcessHet=3.0103;FS=6.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=-5.820e-01;SOR=1.245;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,41:84:99:1084,0,1089
chr5	150886725	rs7723266	G	A	14504.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.740e-01;DB;DP=159;ExcessHet=3.0103;FS=2.980;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.49;ReadPosRankSum=1.08;SOR=0.966;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,90:159:99:2162,0,1629
chr5	150887184	rs56258915	G	GAGA	5837.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.480e-01;DB;DP=44;ExcessHet=3.0103;FS=3.059;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.38;ReadPosRankSum=-2.530e-01;SOR=1.419;VQSLOD=7.15;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,27:44:99:0|1:150887184_G_GAGA:1062,0,1262:150887184
chr5	150887200	rs41290577	A	G	747.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.469;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=1.48;SOR=0.693;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:13,18:31:99:0|1:150887184_G_GAGA:756,0,1159:150887184
chr5	150891544	rs6881292	A	G	53.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.099;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.84;ReadPosRankSum=-1.834e+00;SOR=0.693;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,3:11:62:62,0,201
chr5	150891663	rs6862750	T	C	3431.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.838e+00;DB;DP=43;ExcessHet=3.0103;FS=7.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.84;ReadPosRankSum=1.35;SOR=1.884;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,22:43:99:616,0,653
chr5	150891733	rs2304028	A	G	6597.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.498e+00;DB;DP=80;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.72;ReadPosRankSum=-1.392e+00;SOR=0.655;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,45:80:99:1223,0,1000
chr5	150892565	rs72798330	A	G	111.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.11;SOR=2.833;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:125,9,0
chr5	150901111	rs3822699	A	G	21870.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.698e+00;DB;DP=241;ExcessHet=3.0103;FS=0.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.10;ReadPosRankSum=1.31;SOR=0.616;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:112,129:241:99:3270,0,2777
chr5	150901261	rs6650971	C	T	18040.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.160;DB;DP=278;ExcessHet=3.9794;FS=1.222;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-1.570e-01;SOR=0.833;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:148,130:278:99:3408,0,3979
chr5	150901300	rs3734046	G	A	18249.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DB;DP=294;ExcessHet=3.9794;FS=1.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.25;ReadPosRankSum=0.136;SOR=0.582;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,149:294:99:3583,0,3631
chr5	150901597	rs3734047	G	C	1554.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=126;ExcessHet=3.0103;FS=2.318;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.34;ReadPosRankSum=-4.190e-01;SOR=0.969;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,58:126:99:1563,0,1797
chr5	150901613	rs2053028	A	G	8928.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=110;ExcessHet=3.9794;FS=1.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.57;ReadPosRankSum=-2.730e-01;SOR=0.883;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,50:110:99:1339,0,1544
chr5	150901630	rs3734049	G	T	1089.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.338;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=0.239;SOR=0.697;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,42:107:99:1098,0,1711
chr5	150905398	rs3734051	C	T	1912.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=169;ExcessHet=3.0103;FS=7.760;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.32;ReadPosRankSum=0.819;SOR=1.081;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,76:169:99:1921,0,2327
chr5	150907819	rs11743288	T	C	2503.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.070e-01;DB;DP=80;ExcessHet=6.9897;FS=0.500;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.35;ReadPosRankSum=-1.141e+00;SOR=0.628;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,35:80:99:892,0,1193
chr5	150908813	rs2304024	G	A	1779.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.985;DB;DP=174;ExcessHet=3.0103;FS=0.559;MQ=59.96;MQRankSum=-1.151e+00;POSITIVE_TRAIN_SITE;QD=10.23;ReadPosRankSum=-3.040e-01;SOR=0.747;VQSLOD=2.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:100,74:174:99:1788,0,2495
chr5	150914184	rs1432643	A	T	9123.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.61;DB;DP=134;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.01;ReadPosRankSum=0.596;SOR=0.680;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:74,60:134:99:1516,0,2002
chr5	150917545	rs3816007	G	A	2435.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.910e-01;DB;DP=58;ExcessHet=3.9794;FS=1.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=1.20;SOR=0.850;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,35:58:99:985,0,623
chr5	150921805	rs6579879	G	A	3371.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.22;DB;DP=42;ExcessHet=3.0103;FS=0.848;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.16;ReadPosRankSum=-1.676e+00;SOR=0.832;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,42:42:99:1439,126,0
chr5	150923405	rs6892335	A	G	8037.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=36.08;SOR=0.702;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:2229,183,0
chr5	150925144	rs3797875	A	G	5750.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.67;SOR=0.863;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1831,176,0
chr5	150942774	rs10069901	A	G	3581.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=2.179;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1512,141,0
chr5	150942919	rs6872614	A	G	14311.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=135;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.36;SOR=1.157;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4522,405,0
chr5	150942969	rs2304053	G	A	10059.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=157;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.77;SOR=0.809;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,157:157:99:4973,470,0
chr5	150943085	rs2304054	G	A	9965.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=146;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=1.106;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,146:146:99:4740,438,0
chr5	150945019	rs9324698	C	A	187.93	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.70;SOR=3.611;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr5	150945072	rs9324699	C	A	415.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.98;SOR=2.833;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:169,18,0
chr5	150945161	.	G	A	280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.89;DP=25;ExcessHet=3.0103;FS=0.000;MQ=59.07;MQRankSum=-5.800e-02;QD=11.21;ReadPosRankSum=0.493;SOR=0.804;VQSLOD=-5.777e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,11:25:99:289,0,358
chr5	150945483	rs3734055	C	T	10757.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=172;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.83;SOR=0.818;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,172:172:99:5290,514,0
chr5	150945699	rs10085060	G	A	12699.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.813e+00;DB;DP=173;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.51;ReadPosRankSum=1.09;SOR=0.303;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,173:173:99:5459,517,0
chr5	150945862	rs3734057	A	G	15763.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.036;DB;DP=203;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.80;ReadPosRankSum=-1.358e+00;SOR=0.780;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,203:203:99:6742,609,0
chr5	150945931	rs3734058	C	T	16950.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=238;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.74;ReadPosRankSum=0.830;SOR=0.253;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,237:238:99:7421,704,0
chr5	150946132	rs3734059	G	A	10655.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=151;ExcessHet=0.4576;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=33.40;SOR=0.751;VQSLOD=3.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,151:151:99:4863,453,0
chr5	150946436	rs9324700	A	G	8048.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=100;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=0.988;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3424,300,0
chr5	150946773	rs1432862	G	A	8609.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.330e-01;DB;DP=112;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.42;ReadPosRankSum=1.56;SOR=0.271;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,112:112:99:3465,335,0
chr5	150946966	rs1465690	G	A	12536.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=109;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=0.883;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3662,325,0
chr5	150947162	rs114337863	A	G	3292.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.74;DB;DP=247;ExcessHet=3.0103;FS=0.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.33;ReadPosRankSum=1.18;SOR=0.634;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,134:247:99:3301,0,2500
chr5	150947719	rs3734060	C	T	5723.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=74;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.58;SOR=0.824;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2518,222,0
chr5	150948537	rs1469680	T	C	2039.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.88;POSITIVE_TRAIN_SITE;QD=31.45;SOR=5.784;VQSLOD=6.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:536,42,0
chr5	151043103	rs1053411	G	C	528.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.590e-01;DB;DP=47;ExcessHet=3.0103;FS=1.260;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.24;ReadPosRankSum=-3.230e-01;SOR=1.089;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:537,0,777
chr5	151043213	rs11950384	G	A	850.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.355;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.34;ReadPosRankSum=0.774;SOR=0.648;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,37:75:99:859,0,854
chr5	151046928	rs729853	C	T	853.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.904e+00;DB;DP=61;ExcessHet=3.0103;FS=1.045;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=0.392;SOR=0.888;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,34:61:99:862,0,719
chr5	151049404	rs7719521	A	C	10791.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=145;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=0.471;SOR=0.678;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,75:145:99:1983,0,1706
chr5	151052563	rs1864966	T	C	2340.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.914;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.44;ReadPosRankSum=-9.250e-01;SOR=1.609;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,12:21:99:425,0,296
chr5	151052659	rs1978707	G	A	7314.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.267e+00;DB;DP=94;ExcessHet=3.0103;FS=3.167;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.76;ReadPosRankSum=-8.220e-01;SOR=0.998;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,52:94:99:1306,0,1063
chr5	151054137	rs2116780	A	C	1365.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.150e-01;DB;DP=127;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.75;ReadPosRankSum=3.06;SOR=0.751;VQSLOD=22.13;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:71,56:127:99:1374,0,1912
chr5	151131476	rs75682555	G	A	172.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.53;ReadPosRankSum=0.272;SOR=1.179;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:181,0,101
chr5	151138211	rs1549921	A	G	5175.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.94;DB;DP=108;ExcessHet=6.9897;FS=1.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.66;ReadPosRankSum=0.459;SOR=0.834;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,41:108:99:1087,0,1828
chr5	151150256	rs11290118	CT	C	1098.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.675;DB;DP=34;ExcessHet=3.9794;FS=2.043;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.16;ReadPosRankSum=1.38;SOR=0.475;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,21:34:99:726,0,401
chr5	151167259	rs57723600	T	C	1593.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.27;DB;DP=60;ExcessHet=3.9794;FS=5.789;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.174;SOR=1.228;VQSLOD=22.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,36:60:99:883,0,496
chr5	151167380	rs7719617	A	T	2250.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=43;ExcessHet=3.9794;FS=6.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.50;ReadPosRankSum=2.18;SOR=0.296;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,25:43:99:964,0,1331
chr5	151167387	rs201380366	A	AC	2230.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.977;DB;DP=42;ExcessHet=3.9794;FS=5.356;MQ=60.00;MQRankSum=0.00;QD=22.76;ReadPosRankSum=1.89;SOR=0.336;VQSLOD=4.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,24:42:99:941,0,1334
chr5	151167389	.	GAATATTTTCAATTCATAAAATAAAATTTATGAAT	G	2230.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.16;DP=39;ExcessHet=3.9794;FS=2.905;MQ=60.00;MQRankSum=0.00;QD=24.51;ReadPosRankSum=2.61;SOR=0.449;VQSLOD=4.86;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:18,21:39:99:941,0,1334
chr5	151169791	rs372889235	CA	C	416.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-01;DB;DP=18;ExcessHet=6.9897;FS=6.153;MQ=60.00;MQRankSum=0.00;QD=5.96;ReadPosRankSum=-3.700e-01;SOR=0.253;VQSLOD=4.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:12,3:18:26:26,0,269
chr5	151174605	rs2964569	C	G	1347.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.122e+00;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=59.98;MQRankSum=0.00;QD=16.05;ReadPosRankSum=-1.400e+00;SOR=0.639;VQSLOD=4.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,10:29:99:283,0,713
chr5	151174710	rs79233852	C	T	186.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.367;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=59.87;MQRankSum=0.524;POSITIVE_TRAIN_SITE;QD=12.42;ReadPosRankSum=0.919;SOR=1.075;VQSLOD=1.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,6:15:99:195,0,316
chr5	151175139	rs10074267	A	T	3760.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DB;DP=137;ExcessHet=3.9794;FS=2.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=1.63;SOR=0.830;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,59:137:99:1378,0,1939
chr5	151175202	rs10059511	G	C	3269.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.663;DB;DP=108;ExcessHet=3.9794;FS=9.141;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.77;ReadPosRankSum=2.18;SOR=0.364;VQSLOD=20.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,48:108:99:1068,0,1652
chr5	151175337	rs10074385	A	G	669.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.720e-01;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=1.36;SOR=0.602;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,6:19:99:182,0,473
chr5	151180019	rs372020718	TA	T	84.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.098e+00;DB;DP=39;ExcessHet=3.9794;FS=1.628;MQ=60.00;MQRankSum=0.00;QD=1.17;ReadPosRankSum=0.400;SOR=0.294;VQSLOD=5.24;culprit=QD	GT:AD:DP:GQ:PL	0/1:34,5:39:25:25,0,804
chr5	151180451	rs200261823	AT	A	265.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.858;DB;DP=31;ExcessHet=6.9897;FS=1.669;MQ=60.00;MQRankSum=0.00;QD=2.33;ReadPosRankSum=0.838;SOR=0.519;VQSLOD=5.29;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,6:31:34:34,0,442
chr5	151236039	rs7725327	A	G	2082.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.398e+00;DB;DP=61;ExcessHet=3.9794;FS=7.515;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.10;ReadPosRankSum=0.775;SOR=0.330;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,40:61:99:1059,0,577
chr5	151236117	rs7711609	T	C	660.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.090e-01;DB;DP=15;ExcessHet=3.9794;FS=3.278;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.35;ReadPosRankSum=-5.220e-01;SOR=0.247;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:89:322,0,89
chr5	151236214	rs7711771	T	C	99.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.13;SOR=2.833;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:113,9,0
chr5	151239290	rs7729026	G	A	2248.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.337e+00;DB;DP=89;ExcessHet=3.9794;FS=3.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.22;ReadPosRankSum=-4.240e-01;SOR=0.468;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,56:89:99:1351,0,758
chr5	151239306	rs6870491	T	C	2381.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.448e+00;DB;DP=87;ExcessHet=3.9794;FS=3.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.105;SOR=0.472;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,54:87:99:1278,0,814
chr5	151266534	rs1346489	C	T	74.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.06;SOR=2.303;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:88,6,0
chr5	151304306	rs2071221	G	A	495.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.902e+00;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.55;ReadPosRankSum=0.272;SOR=1.085;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:106,0,144
chr5	151771817	rs1363422	C	T	13432.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=30.88;SOR=0.978;VQSLOD=4.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,148:148:99:4569,441,0
chr5	151784731	.	GA	G	285.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.510e-01;DP=39;ExcessHet=6.9897;FS=1.067;MQ=59.93;MQRankSum=0.00;QD=2.98;ReadPosRankSum=-9.590e-01;SOR=0.454;VQSLOD=5.14;culprit=QD	GT:AD:DP:GQ:PL	0/1:31,8:39:66:66,0,625
chr5	152871788	rs3841128	T	TC	2745.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DB;DP=175;ExcessHet=3.0103;FS=0.562;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.69;ReadPosRankSum=-9.930e-01;SOR=0.768;VQSLOD=7.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:88,87:175:99:2754,0,2756
chr5	153056890	rs150898364	T	TA	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.01;ReadPosRankSum=1.37;SOR=0.412;VQSLOD=5.51;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:63:63,0,92
chr5	153065746	rs10035262	A	G	1584.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.620e+00;DB;DP=43;ExcessHet=6.9897;FS=3.433;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-6.410e-01;SOR=1.065;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,27:43:99:711,0,425
chr5	153066015	rs10073988	T	C	762.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=15;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.62;ReadPosRankSum=0.414;SOR=1.002;VQSLOD=23.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:92:436,0,92
chr5	153066088	rs10075495	T	C	360.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.07;ReadPosRankSum=-6.520e-01;SOR=1.981;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:220,15,0
chr5	153066106	rs10075497	T	A	212.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.60;ReadPosRankSum=-1.645e+00;SOR=1.863;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr5	153144216	rs3813470	A	G	5247.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.493e+00;DB;DP=65;ExcessHet=3.0103;FS=5.951;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.77;ReadPosRankSum=-1.300e-02;SOR=0.288;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,38:65:99:956,0,765
chr5	153182273	rs17115256	T	C	197.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.64;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=0.105;SOR=0.223;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:99:103,0,234
chr5	153674536	.	TTGTGTGTGTG	T,TTGTGTG	1472.08	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-7.220e-01;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.19;ReadPosRankSum=0.516;SOR=3.365;VQSLOD=4.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,5:10:99:416,188,169,211,0,196
chr5	153677361	.	TGA	T	3798.69	PASS	AC=2;AF=1.00;AN=2;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.13;SOR=4.434;VQSLOD=6.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,25:25:84:1248,84,0
chr5	153709043	rs1004976	G	A	10220.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.88;SOR=3.307;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,83:83:99:2922,248,0
chr5	153709521	rs10689905	C	CAAA	187.55	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=28.48;SOR=3.611;VQSLOD=4.67;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:18:202,18,0
chr5	153726882	rs10515707	A	G	2222.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=1.863;VQSLOD=21.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:854,84,0
chr5	153735484	rs918510	C	T	104.97	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=2.833;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr5	153760270	rs2010010	T	C	2145.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.01;DB;DP=27;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.67;ReadPosRankSum=0.590;SOR=1.038;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1134,81,0
chr5	153789078	rs6580077	C	G	3091.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.641e+00;DB;DP=130;ExcessHet=3.9794;FS=0.449;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.20;ReadPosRankSum=-3.550e-01;SOR=0.751;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,59:130:99:1361,0,1937
chr5	153789590	rs4958735	T	G	324.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.21;ReadPosRankSum=1.65;SOR=1.329;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:70:70,0,107
chr5	153792490	rs35448914	C	T	2428.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.935;DB;DP=177;ExcessHet=3.0103;FS=0.568;MQ=59.91;MQRankSum=-8.860e-01;POSITIVE_TRAIN_SITE;QD=13.72;ReadPosRankSum=1.12;SOR=0.768;VQSLOD=1.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:79,98:177:99:2437,0,1843
chr5	153795067	rs7727641	C	T	517.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.36;SOR=2.584;VQSLOD=21.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:75,9,0
chr5	153795209	rs11167678	C	G	1071.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.360e-01;DB;DP=28;ExcessHet=6.9897;FS=2.704;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.72;ReadPosRankSum=0.222;SOR=0.452;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:142,0,482
chr5	153795274	rs11321246	TA	T	1574.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.32;DB;DP=50;ExcessHet=6.9897;FS=16.716;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.71;ReadPosRankSum=0.184;SOR=1.873;VQSLOD=0.179;culprit=FS	GT:AD:DP:GQ:PL	0/1:35,15:50:99:308,0,909
chr5	153830890	rs2277939	G	A	2789.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.62;ReadPosRankSum=0.00;SOR=0.716;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1094,93,0
chr5	153835378	rs1007404	C	G	1678.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628e+00;DB;DP=34;ExcessHet=6.9897;FS=3.344;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.40;ReadPosRankSum=-7.250e-01;SOR=0.368;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,21:34:99:510,0,432
chr5	153856974	rs1846966	C	G	6696.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.870;DB;DP=172;ExcessHet=6.9897;FS=2.742;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.47;ReadPosRankSum=-2.560e-01;SOR=0.970;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:88,84:172:99:2294,0,2255
chr5	154065299	rs11372758	A	AG	429.82	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.53;ReadPosRankSum=0.713;SOR=1.730;VQSLOD=7.11;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,7:12:99:258,0,146
chr5	154065382	rs33982250	TA	T	1185.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=48;ExcessHet=3.9794;FS=1.958;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.17;ReadPosRankSum=0.910;SOR=0.976;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:23,25:48:99:736,0,648
chr5	154065496	rs4958759	G	C	2965.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.30;DB;DP=103;ExcessHet=6.9897;FS=0.928;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=1.08;SOR=0.615;VQSLOD=6.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,38:103:99:999,0,1587
chr5	154065758	rs4958760	A	G	342.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.123;DB;DP=13;ExcessHet=3.9794;FS=2.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.16;ReadPosRankSum=1.12;SOR=0.180;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,6:13:99:179,0,225
chr5	154135386	rs78112077	G	A	1871.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.750e-01;DB;DP=57;ExcessHet=3.9794;FS=3.171;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=0.114;SOR=0.455;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,23:57:99:532,0,985
chr5	154193735	rs863649	A	G	9339.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.45;SOR=2.339;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2931,258,0
chr5	154209207	rs2560040	A	G	1721.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-01;DB;DP=55;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.512;SOR=0.650;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,32:55:99:904,0,599
chr5	154268902	rs816739	C	T	10819.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.64;SOR=0.717;VQSLOD=20.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3430,315,0
chr5	154271391	rs702743	A	C	4153.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.50;SOR=1.553;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1401,131,0
chr5	154271948	rs816736	G	A	18623.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=186;ExcessHet=3.0103;FS=0.000;MQ=59.99;POSITIVE_TRAIN_SITE;QD=31.84;SOR=1.177;VQSLOD=5.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,186:186:99:5654,556,0
chr5	154275962	rs816747	G	A	1227.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=14;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.49;SOR=1.096;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:475,42,0
chr5	154276061	rs816746	A	G	1259.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=1.501;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:222,21,0
chr5	154278888	rs816740	C	T	6795.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=69;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.17;SOR=1.153;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,69:69:99:2095,207,0
chr5	154281216	rs863650	G	A	548.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.46;SOR=5.421;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr5	154287016	rs76813157	T	TGAAAAAAAA	2406.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.93;POSITIVE_TRAIN_SITE;QD=33.46;SOR=3.716;VQSLOD=6.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:33:485,33,0
chr5	154287115	rs6580119	T	C	6423.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.94;SOR=1.671;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1784,168,0
chr5	154291016	rs13181649	C	T	405.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.78;SOR=1.981;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr5	154291219	rs6580121	A	G	3601.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=2.153;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,44:44:99:1373,132,0
chr5	154291409	rs1974777	C	T	8745.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=111;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.23;SOR=1.368;VQSLOD=20.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,111:111:99:3361,332,0
chr5	154291496	rs1974776	G	A	3882.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.37;SOR=4.593;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1431,105,0
chr5	154300940	rs348739	A	C	7700.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.95;SOR=0.925;VQSLOD=19.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,93:93:99:2563,277,0
chr5	154306972	rs2258437	T	C	2748.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.93;SOR=2.513;VQSLOD=21.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:729,66,0
chr5	154308282	rs2644743	C	T	2094.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.05;SOR=3.383;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:57:645,57,0
chr5	154308307	rs1035368	G	A	1461.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.55;SOR=3.664;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:420,39,0
chr5	154311235	rs2644744	T	C	2542.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.96;SOR=3.511;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:761,66,0
chr5	154311576	rs2544866	T	C	2207.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.72;POSITIVE_TRAIN_SITE;QD=26.95;SOR=3.841;VQSLOD=4.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:425,33,0
chr5	154346259	rs14922	A	G	469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.988e+00;DB;DP=29;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=-5.400e-01;SOR=0.593;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,18:29:99:478,0,298
chr5	155771421	rs142807316	A	AT	33.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.524;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.66;ReadPosRankSum=0.524;SOR=0.446;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:42:42,0,71
chr5	155771773	rs4434364	A	G	1855.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.580;DB;DP=24;ExcessHet=3.9794;FS=7.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=0.061;SOR=1.797;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,8:24:99:219,0,449
chr5	155771879	rs9313890	G	A	402.68	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.65;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.98;ReadPosRankSum=1.65;SOR=2.147;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr5	155885469	rs11954391	T	C	1954.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.080e-01;DB;DP=37;ExcessHet=6.9897;FS=0.000;MQ=56.29;MQRankSum=-4.112e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-1.500e-02;SOR=0.707;VQSLOD=-1.577e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,22:37:99:580,0,371
chr5	155935836	rs115859006	A	G	679.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.074e+00;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.92;ReadPosRankSum=0.854;SOR=0.602;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,29:57:99:688,0,700
chr5	156074250	rs39925	T	G	179.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.41;ReadPosRankSum=1.47;SOR=1.179;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:63:188,0,63
chr5	156074654	rs141437738	TAAATTGA	T	3140.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.670e-01;DB;DP=34;ExcessHet=3.0103;FS=2.331;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=0.411;SOR=0.349;VQSLOD=7.09;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1522,103,0
chr5	156074713	rs32055	A	C	1105.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.52;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.36;ReadPosRankSum=0.732;SOR=3.841;VQSLOD=16.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:442,30,0
chr5	156347214	rs7732745	C	T	54.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.87;ReadPosRankSum=-5.240e-01;SOR=0.446;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:63:63,0,104
chr5	156349362	rs11134456	T	C	847.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.488e+00;DB;DP=23;ExcessHet=6.9897;FS=10.808;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.29;ReadPosRankSum=-1.460e-01;SOR=0.055;VQSLOD=18.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,11:23:99:297,0,380
chr5	156376429	rs71663704	CCCT	C	1512.33	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.67;DB;DP=14;ExcessHet=3.0103;FS=2.534;MQ=59.70;MQRankSum=0.00;QD=34.84;SOR=0.330;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,14:14:42:581,42,0
chr5	156376703	rs6873053	A	G	6560.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=62;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.222;VQSLOD=21.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1888,185,0
chr5	156381370	rs7724832	G	A	2175.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.796e+00;DB;DP=41;ExcessHet=1.5490;FS=1.046;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.13;ReadPosRankSum=-1.772e+00;SOR=0.481;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1399,123,0
chr5	156390297	rs6882076	T	C	4102.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=59;ExcessHet=3.9794;FS=1.037;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.95;ReadPosRankSum=0.649;SOR=0.772;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1857,177,0
chr5	156459856	rs34670839	C	T	1907.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=87;ExcessHet=3.9794;FS=4.443;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.35;ReadPosRankSum=-3.920e-01;SOR=0.832;VQSLOD=6.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,42:87:99:959,0,1000
chr5	156460095	rs2277025	T	C	77.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=2.303;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:90,6,0
chr5	156464212	rs4704837	T	G	1378.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=17;ExcessHet=3.0103;FS=2.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.14;ReadPosRankSum=-9.080e-01;SOR=1.531;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:706,51,0
chr5	156464242	rs2036402	T	C	609.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.570e-01;DB;DP=28;ExcessHet=3.9794;FS=1.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.71;ReadPosRankSum=1.34;SOR=0.985;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:414,0,379
chr5	156469452	rs144701880	CAAA	C,CAA	194.15	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=24.27;SOR=2.833;VQSLOD=4.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,2,2:4:43:122,43,76,65,0,51
chr5	156469808	rs13173581	C	T	2910.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.350e-01;DB;DP=87;ExcessHet=3.9794;FS=1.142;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.16;ReadPosRankSum=1.41;SOR=0.759;VQSLOD=6.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:40,47:87:99:1120,0,1025
chr5	156475829	rs57910107	A	G	70.35	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.45;ReadPosRankSum=0.967;SOR=0.223;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:79,0,32
chr5	156475855	rs57620461	AAC	A	465.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.09;ReadPosRankSum=0.00;SOR=1.127;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:107,9,0
chr5	156479204	rs2279804	C	T	1828.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.98;ReadPosRankSum=0.471;SOR=2.948;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,13:16:68:470,0,68
chr5	156479323	rs1553318	G	C	6807.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=6.24;DB;DP=114;ExcessHet=1.5490;FS=1.743;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.59;ReadPosRankSum=-4.190e-01;SOR=0.523;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:4213,342,0
chr5	156479424	rs1553317	A	C	41082.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.83;DB;DP=455;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.52;ReadPosRankSum=-1.700e-01;SOR=0.658;VQSLOD=6.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,455:455:99:18031,1389,0
chr5	156479426	rs12522248	T	C	17817.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.87;DB;DP=471;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.173;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=1.41;SOR=0.671;VQSLOD=2.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:208,263:471:99:7225,0,4988
chr5	156479509	rs1553316	A	G	45078.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.350e+00;DB;DP=634;ExcessHet=3.0103;FS=0.625;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.39;ReadPosRankSum=1.51;SOR=0.746;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,634:634:99:18796,1898,0
chr5	156479557	rs141023871	GTTGGAACAGTCGTCA	G	31732.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.29;DB;DP=466;ExcessHet=1.5490;FS=1.191;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.86;ReadPosRankSum=-2.766e+00;SOR=0.788;VQSLOD=5.97;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	1/1:0,466:466:99:20724,1411,0
chr5	156482099	rs2270925	T	C	639.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.57;DB;DP=12;ExcessHet=1.5490;FS=4.821;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.07;ReadPosRankSum=0.883;SOR=0.111;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:39:1|1:156482099_T_C:572,39,0:156482099
chr5	156482101	rs2270924	A	T	639.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.78;DB;DP=13;ExcessHet=1.5490;FS=4.738;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.33;ReadPosRankSum=0.884;SOR=0.129;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,13:13:39:1|1:156482099_T_C:572,39,0:156482099
chr5	156482459	rs1809941	G	T	9186.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.311e+00;DB;DP=110;ExcessHet=3.0103;FS=3.469;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.56;ReadPosRankSum=1.88;SOR=0.913;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3541,330,0
chr5	156482669	rs870581	G	A	267.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.021e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.27;ReadPosRankSum=-7.900e-02;SOR=1.445;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,8:12:99:276,0,121
chr5	156484626	rs4704839	A	T	820.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.464;DB;DP=10;ExcessHet=3.0103;FS=3.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.40;ReadPosRankSum=-2.310e-01;SOR=2.066;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:422,30,0
chr5	156484648	rs4704840	G	C	974.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.935e+00;DB;DP=10;ExcessHet=3.0103;FS=5.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.46;ReadPosRankSum=0.079;SOR=2.154;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:398,30,0
chr5	156485186	rs67960962	T	C	356.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.81;ReadPosRankSum=1.28;SOR=0.693;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:69:69,0,148
chr5	156514453	rs35226856	TA	T	555.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.222;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=-8.400e-02;SOR=2.419;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:283,21,0
chr5	156531561	rs2902306	C	T	1946.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.908;DB;DP=24;ExcessHet=3.0103;FS=1.628;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.22;ReadPosRankSum=0.192;SOR=1.308;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:722,72,0
chr5	156531736	rs1036199	C	A	3110.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.350e-01;DB;DP=46;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.69;ReadPosRankSum=0.362;SOR=0.625;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1363,138,0
chr5	156531865	rs1036200	A	G	1399.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.800e-01;DB;DP=17;ExcessHet=3.0103;FS=1.511;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.92;ReadPosRankSum=-4.460e-01;SOR=1.091;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:575,51,0
chr5	156536137	rs116363290	C	T	376.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=23;ExcessHet=3.0103;FS=2.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=1.05;SOR=1.445;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:385,0,292
chr5	156608284	rs409602	T	A	226.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.69;ReadPosRankSum=-4.310e-01;SOR=1.085;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,139
chr5	156644649	rs2288504	G	A	208.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.89;ReadPosRankSum=-8.420e-01;SOR=1.085;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr5	156644775	rs5872504	T	TC	4842.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=34.59;SOR=1.785;VQSLOD=5.52;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1635,146,0
chr5	156668468	rs3734024	T	C	337.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.133e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.99;ReadPosRankSum=0.328;SOR=1.609;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:249,18,0
chr5	156670916	rs66943334	C	T	677.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.78;SOR=2.303;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:65:694,65,0
chr5	156671000	rs34099004	C	T	148.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.64;SOR=3.611;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:165,15,0
chr5	156679423	rs12055362	G	A	99.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.18;ReadPosRankSum=-6.520e-01;SOR=0.223;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:108,0,113
chr5	156679576	rs27341	T	C	4725.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=64;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=0.997;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:1968,192,0
chr5	156712734	rs11428053	T	TC	1218.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.79;SOR=4.743;VQSLOD=7.01;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,11:11:33:411,33,0
chr5	156721863	rs5872508	T	TC	10557.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.73;SOR=0.895;VQSLOD=6.26;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3659,331,0
chr5	156741583	rs895309	A	G	740.86	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.37;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.55;ReadPosRankSum=0.891;SOR=0.557;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:303,21,0
chr5	156741674	rs895308	T	A	214.48	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.530e-01;DB;DP=3;ExcessHet=1.5490;FS=14.472;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.81;ReadPosRankSum=0.524;SOR=3.894;VQSLOD=12.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:123,9,0
chr5	156741743	rs1867669	C	T	374.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.068e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.78;ReadPosRankSum=-1.345e+00;SOR=1.781;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:210,18,0
chr5	156742186	rs6897056	G	A	939.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.198e+00;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.10;ReadPosRankSum=1.42;SOR=1.302;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:534,45,0
chr5	156747584	rs7730231	C	T	3882.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.066e+00;DB;DP=94;ExcessHet=1.5490;FS=1.927;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.42;ReadPosRankSum=-1.003e+00;SOR=0.477;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3155,281,0
chr5	156747614	rs6555939	G	T	7633.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.153;DB;DP=135;ExcessHet=0.4576;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.05;ReadPosRankSum=1.17;SOR=0.873;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,135:135:99:4445,404,0
chr5	156747632	rs2863198	C	G	6357.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.436e+00;DB;DP=173;ExcessHet=1.5490;FS=1.849;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.15;ReadPosRankSum=-6.230e-01;SOR=0.541;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,173:173:99:5130,519,0
chr5	156747669	rs1823035	A	G	8840.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.06;DB;DP=237;ExcessHet=1.5490;FS=1.465;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.79;ReadPosRankSum=1.30;SOR=0.584;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,237:237:99:7241,711,0
chr5	156749797	rs11134691	T	C	729.05	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.96;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=59.56;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=34.72;ReadPosRankSum=-1.036e+00;SOR=3.160;VQSLOD=0.301;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,15:15:45:632,45,0
chr5	156750834	rs34143712	G	GA	1176.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.724e+00;DB;DP=24;ExcessHet=1.5490;FS=1.146;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.11;ReadPosRankSum=0.541;SOR=0.458;VQSLOD=7.47;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,24:24:72:642,72,0
chr5	156755273	rs13155266	C	T	315.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.70;SOR=4.407;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	156760214	rs13181919	C	G	618.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.897e+00;DB;DP=14;ExcessHet=1.5490;FS=8.900;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-5.700e-02;SOR=0.042;VQSLOD=19.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:489,42,0
chr5	156760799	rs1900158	G	A	866.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.34;SOR=1.697;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:305,30,0
chr5	156761070	rs12656549	C	T	2002.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=23;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.43;SOR=1.961;VQSLOD=20.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:836,69,0
chr5	156761253	rs12652242	G	A	223.42	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=3.912;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr5	156762071	rs10077387	A	G	4875.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=75;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.34;SOR=1.765;VQSLOD=21.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,75:75:99:2552,224,0
chr5	156762245	rs9313545	A	G	5101.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=1.609;VQSLOD=21.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2582,243,0
chr5	156763650	rs10036098	T	C	1646.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=28;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=2.049;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,28:28:84:859,84,0
chr5	156763684	rs10043769	C	T	2630.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=53;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.95;SOR=1.609;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,53:53:99:1557,158,0
chr5	156763823	rs10038052	G	A	2894.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=47;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.13;SOR=1.511;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1413,141,0
chr5	156763921	rs11134699	C	A	1240.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.69;SOR=2.165;VQSLOD=21.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:296,24,0
chr5	156765870	rs12517646	G	A	1396.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.85;SOR=3.202;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:714,60,0
chr5	156765981	rs3734026	G	A	4096.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.27;SOR=1.628;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1775,174,0
chr5	156766037	rs3734027	A	G	5344.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=76;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.72;SOR=1.159;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2228,227,0
chr5	156766273	rs3734028	G	A	2031.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=59.80;POSITIVE_TRAIN_SITE;QD=33.87;SOR=1.812;VQSLOD=5.81;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,26:26:78:1|1:156766273_G_A:869,78,0:156766273
chr5	156766285	.	A	T	88.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.135e+00;DP=27;ExcessHet=3.9794;FS=16.113;MQ=59.78;MQRankSum=0.820;NEGATIVE_TRAIN_SITE;QD=1.61;ReadPosRankSum=1.27;SOR=3.979;VQSLOD=-4.333e+00;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:24,3:27:2:0|1:156766273_G_A:2,0,930:156766273
chr5	156768395	rs70984462	CA	C	78.08	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.03;SOR=2.833;VQSLOD=5.51;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:93,9,0
chr5	156769552	rs55678400	T	TAA	300.84	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.47;SOR=3.912;VQSLOD=5.09;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:135,9,0
chr5	156769668	rs7715719	C	T	833.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.75;SOR=2.494;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:460,39,0
chr5	156770133	rs10037485	C	T	8737.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=130;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.61;SOR=1.131;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,130:130:99:4329,389,0
chr5	156770653	rs13182147	G	A	680.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.093e+00;DB;DP=11;ExcessHet=1.5490;FS=14.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.63;ReadPosRankSum=-6.600e-02;SOR=0.021;VQSLOD=12.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:367,33,0
chr5	156770688	rs10061992	G	A	959.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.16;SOR=4.977;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:319,24,0
chr5	156770774	rs10062052	G	A	264.95	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.20;SOR=4.174;VQSLOD=21.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	156786432	rs3816319	A	T	1115.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=3.477;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:54:658,54,0
chr5	156788970	rs11134722	A	G	105.79	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=26.78;SOR=2.833;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr5	156817376	rs7724666	C	T	321.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.10;SOR=2.303;VQSLOD=21.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:177,18,0
chr5	156822874	rs34080972	T	A	232.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.025e+00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.12;ReadPosRankSum=-1.100e+00;SOR=0.399;VQSLOD=22.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr5	156898690	rs6860507	A	G	3032.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.93;SOR=1.711;VQSLOD=22.10;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1518,144,0
chr5	156898899	rs4704869	G	A	3765.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=33.93;SOR=1.856;VQSLOD=5.28;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,27:27:81:910,81,0
chr5	156899173	rs9313606	A	C	1172.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.81;SOR=4.047;VQSLOD=21.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:586,51,0
chr5	156899290	rs9313607	T	C	4534.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.870e-01;DB;DP=49;ExcessHet=3.0103;FS=1.690;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.99;ReadPosRankSum=-5.460e-01;SOR=0.545;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1698,147,0
chr5	156899869	rs4704870	T	C	15515.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=133;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=34.40;SOR=2.008;VQSLOD=4.25;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4573,396,0
chr5	156915874	rs7702519	T	C	235.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.63;SOR=1.609;VQSLOD=19.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:169,15,0
chr5	156916037	rs10674185	C	CAAAAAGAA	2225.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=0.4576;FS=0.000;MQ=59.88;QD=25.09;SOR=2.007;VQSLOD=3.92;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,18:18:60:899,60,0
chr5	156917340	rs10067096	A	C	7337.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.66;SOR=0.788;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3179,291,0
chr5	156918850	rs2287749	C	T	8979.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.624e+00;DB;DP=190;ExcessHet=1.5490;FS=2.075;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=2.17;SOR=0.527;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,190:190:99:6003,569,0
chr5	156919806	rs4704871	C	T	1291.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.10;SOR=4.112;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:499,36,0
chr5	156926367	rs35668869	G	A	66.19	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.10;SOR=2.303;VQSLOD=20.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:78,6,0
chr5	156945657	rs11466764	G	C	1122.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DB;DP=19;ExcessHet=1.5490;FS=4.597;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.11;ReadPosRankSum=0.868;SOR=2.034;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:264,0,281
chr5	156946049	rs2042247	A	G	3477.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.036e+00;DB;DP=41;ExcessHet=3.0103;FS=5.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=0.263;SOR=0.311;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1309,123,0
chr5	156946803	rs11465284	C	A	1065.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.304e+00;DB;DP=39;ExcessHet=3.9794;FS=1.388;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-1.500e-02;SOR=0.400;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,23:39:99:660,0,524
chr5	156957741	rs3822696	C	T	1496.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.662;DB;DP=17;ExcessHet=3.9794;FS=1.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.68;ReadPosRankSum=1.77;SOR=0.313;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:651,51,0
chr5	156957784	rs3734032	C	A	431.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=47;ExcessHet=3.0103;FS=7.194;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.18;ReadPosRankSum=0.449;SOR=1.999;VQSLOD=20.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,18:47:99:440,0,691
chr5	156958127	rs11465283	C	T	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.17;ReadPosRankSum=-1.209e+00;SOR=0.446;VQSLOD=22.49;culprit=QD	GT:AD:DP:GQ:PL	0/1:9,4:13:63:63,0,282
chr5	156997785	rs11746737	C	T	1551.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=40;ExcessHet=6.9897;FS=8.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.61;ReadPosRankSum=1.10;SOR=1.584;VQSLOD=20.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,18:40:99:519,0,638
chr5	156999340	rs7719224	C	T	1335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=52;ExcessHet=3.9794;FS=1.473;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.22;ReadPosRankSum=0.329;SOR=0.892;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,19:52:99:424,0,760
chr5	157002552	rs6556092	A	G	7448.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=0.969;VQSLOD=20.66;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2216,215,0
chr5	157065054	rs10043897	C	T	358.13	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DB;DP=3;ExcessHet=3.0103;FS=7.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.56;ReadPosRankSum=-6.740e-01;SOR=4.615;VQSLOD=12.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:130,9,0
chr5	157065127	rs112162860	TGAA	T	130.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.01;ReadPosRankSum=0.00;SOR=0.180;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:75:75,0,120
chr5	157073947	rs7727762	T	C	132.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.49;ReadPosRankSum=1.04;SOR=0.330;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:64:117,0,64
chr5	157075943	rs10548995	TAC	T	1134.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.530e-01;DB;DP=17;ExcessHet=6.9897;FS=2.746;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.46;ReadPosRankSum=0.375;SOR=0.368;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,8:17:99:251,0,285
chr5	157094771	rs36105993	TAC	T	946.98	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.176;DB;DP=17;ExcessHet=3.9794;FS=4.556;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.22;ReadPosRankSum=0.498;SOR=0.230;VQSLOD=6.88;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,17:17:51:547,51,0
chr5	157098446	rs11134885	A	G	2191.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.535e+00;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=0.189;SOR=0.622;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:469,0,585
chr5	157098949	rs114807141	A	G	892.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.28;ReadPosRankSum=1.37;SOR=1.105;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:291,0,345
chr5	157101857	rs4704747	A	G	334.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.86;SOR=4.407;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:157101836_C_A:89,6,0:157101836
chr5	157102063	rs10051782	G	A	3432.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-02;DB;DP=81;ExcessHet=3.9794;FS=3.384;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.50;ReadPosRankSum=2.74;SOR=0.481;VQSLOD=22.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,43:81:99:1025,0,891
chr5	157102185	rs6884959	A	G	3145.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.700e-01;DB;DP=63;ExcessHet=3.9794;FS=4.636;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.10;ReadPosRankSum=1.21;SOR=0.439;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,33:63:99:789,0,764
chr5	157106785	rs6556177	C	T	3276.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.500e-02;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.14;ReadPosRankSum=0.886;SOR=0.711;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:411,0,262
chr5	157163259	.	CT	C	55.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.07;ReadPosRankSum=0.674;SOR=1.112;VQSLOD=5.38;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,2:4:23:38,0,23
chr5	157164889	rs2270813	T	C	2292.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.068;DB;DP=58;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.49;ReadPosRankSum=-2.200e-01;SOR=0.676;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:655,0,779
chr5	157164962	rs2270812	T	C	3800.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.030e-01;DB;DP=76;ExcessHet=3.9794;FS=1.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.01;ReadPosRankSum=1.46;SOR=0.561;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,39:76:99:915,0,895
chr5	157165434	rs3756655	G	A	157.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.09;ReadPosRankSum=0.524;SOR=0.368;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,96
chr5	157165470	rs3756656	G	C	276.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.092e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=1.59;SOR=0.297;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,4:8:99:133,0,153
chr5	157166598	rs3194515	C	T	240.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.01;ReadPosRankSum=1.18;SOR=0.859;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:98:145,0,98
chr5	157171583	rs10061308	G	A	72.83	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.38;SOR=2.303;VQSLOD=21.60;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:86,6,0
chr5	157178238	rs11952044	C	T	248.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=-3.660e-01;SOR=1.828;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:64:64,0,182
chr5	157178592	rs56398160	TA	T	8559.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.46;SOR=2.104;VQSLOD=5.83;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,67:67:99:2491,202,0
chr5	157180930	rs35074350	CT	C	694.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.137;DB;DP=21;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.78;ReadPosRankSum=0.784;SOR=0.743;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:21:99:220,0,229
chr5	157180959	rs141155397	AAAT	A	1028.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.290e-01;DB;DP=32;ExcessHet=3.9794;FS=5.379;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.82;ReadPosRankSum=1.43;SOR=1.539;VQSLOD=6.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:20,12:32:99:418,0,848
chr5	157181643	rs10066198	T	C	234.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.34;ReadPosRankSum=0.842;SOR=0.693;VQSLOD=21.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:63:122,0,63
chr5	157181700	rs70984486	CAAAAA	C,CAAA	321.87	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.26;SOR=5.283;VQSLOD=5.10;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,2,4:8:62:225,140,187,81,0,62
chr5	157241367	rs140043015	TA	T	170.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.687;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.10;ReadPosRankSum=2.09;SOR=0.321;VQSLOD=5.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:95:95,0,125
chr5	157246700	rs147113236	C	T	332.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.360e-01;DB;DP=36;ExcessHet=3.0103;FS=1.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.23;ReadPosRankSum=2.17;SOR=0.970;VQSLOD=21.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,15:36:99:341,0,576
chr5	157247160	rs254673	G	A	726.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.978;DB;DP=18;ExcessHet=6.9897;FS=2.863;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.84;ReadPosRankSum=1.54;SOR=1.218;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,4:18:99:109,0,422
chr5	157285728	rs6894904	G	A	1095.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.923e+00;DB;DP=20;ExcessHet=6.9897;FS=3.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=-2.890e-01;SOR=1.821;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:172,0,461
chr5	158139856	rs12520521	T	C	711.90	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.200e-01;DB;DP=9;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.42;ReadPosRankSum=-1.650e-01;SOR=1.863;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:339,27,0
chr5	158140222	rs3734105	G	A	4591.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.09;ReadPosRankSum=0.315;SOR=1.364;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,40:40:99:1552,120,0
chr5	158204425	rs1368298	A	G	3953.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.02;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.81;ReadPosRankSum=0.745;SOR=0.753;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:1999,179,0
chr5	158204770	rs1432680	C	T	491.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.740e-01;DB;DP=47;ExcessHet=3.0103;FS=1.184;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.45;ReadPosRankSum=-1.378e+00;SOR=0.456;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,20:47:99:500,0,721
chr5	158511579	rs200028682	CA	C	349.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=31;ExcessHet=6.9897;FS=0.000;MQ=59.95;MQRankSum=0.00;QD=3.64;ReadPosRankSum=0.466;SOR=0.771;VQSLOD=5.39;culprit=QD	GT:AD:DP:GQ:PL	0/1:25,5:31:47:47,0,505
chr5	158522577	rs12659540	C	A	1156.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.711;DB;DP=15;ExcessHet=3.9794;FS=9.607;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.83;ReadPosRankSum=0.945;SOR=2.133;VQSLOD=18.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:547,45,0
chr5	158523584	rs6556385	T	C	3225.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.85;SOR=5.330;VQSLOD=21.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:828,72,0
chr5	158526270	rs10537975	AGCTGCC	A	7021.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=30.33;SOR=7.328;VQSLOD=7.49;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2594,175,0
chr5	158526534	rs5872586	TA	T	4155.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.163;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=59.90;MQRankSum=-3.310e-01;POSITIVE_TRAIN_SITE;QD=19.98;ReadPosRankSum=0.908;SOR=0.789;VQSLOD=2.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:8,52:64:8:1194,0,8
chr5	158588633	rs139682876	GAAAAA	G	6715.08	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.72;DB;DP=54;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=0.00;QD=30.25;ReadPosRankSum=1.48;SOR=0.681;VQSLOD=5.58;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,54:54:99:2398,163,0
chr5	158589858	rs10515774	T	C	88.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.70;ReadPosRankSum=1.01;SOR=1.609;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:97:97,0,138
chr5	158589898	rs2304056	C	G	355.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.48;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.44;ReadPosRankSum=0.849;SOR=0.481;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:191,0,132
chr5	158600776	rs62378710	C	T	164.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.23;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.73;ReadPosRankSum=-1.011e+00;SOR=0.446;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:173,0,245
chr5	158600921	rs2060211	C	G	270.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.51;ReadPosRankSum=-8.730e-01;SOR=0.551;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,12:36:99:279,0,580
chr5	158603571	rs1473247	T	C	1096.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=-3.700e-02;SOR=0.708;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:559,0,494
chr5	158608825	rs3213859	C	T	548.39	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.180;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.27;ReadPosRankSum=0.00;SOR=2.712;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:127,9,0
chr5	158635102	rs6556405	T	C	136.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.55;ReadPosRankSum=0.674;SOR=1.981;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:37,0,37
chr5	158697131	rs2420825	C	T	1231.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=1.37;SOR=2.774;VQSLOD=20.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:88:143,0,88
chr5	158697481	rs3734104	C	G	6720.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.356e+00;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=-5.690e-01;SOR=0.750;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,50:86:99:1192,0,1035
chr5	158705370	rs12520035	A	G	2529.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=100;ExcessHet=3.9794;FS=5.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.69;ReadPosRankSum=0.022;SOR=0.989;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,36:100:99:879,0,1563
chr5	158710419	rs1433046	C	T	1345.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.497e+00;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.26;ReadPosRankSum=0.00;SOR=1.101;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:170,0,276
chr5	158743846	rs11574790	G	A	2913.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.040e-01;DB;DP=83;ExcessHet=6.9897;FS=0.964;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=0.454;SOR=0.622;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,46:83:99:1071,0,862
chr5	158747564	rs919766	A	C	1524.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.03;DB;DP=22;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=0.792;SOR=1.648;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:455,0,340
chr5	158750013	rs2288831	T	C	267.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.086e+00;DB;DP=18;ExcessHet=3.0103;FS=6.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.85;ReadPosRankSum=0.134;SOR=0.048;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,10:18:99:276,0,272
chr5	159343773	.	G	A	412.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.23;DP=23;ExcessHet=3.0103;FS=6.628;MQ=60.00;MQRankSum=0.00;QD=17.92;ReadPosRankSum=2.22;SOR=2.786;VQSLOD=16.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,12:23:99:421,0,343
chr5	159437264	rs5872624	CA	C	52.34	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=17.45;SOR=2.833;VQSLOD=2.04;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:11:66,11,0
chr5	159478089	rs5872626	GT	G	446.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.400e-02;DB;DP=15;ExcessHet=6.9897;FS=1.007;MQ=60.00;MQRankSum=0.00;QD=6.38;ReadPosRankSum=0.00;SOR=0.896;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,8:15:99:138,0,124
chr5	159505208	rs4360078	C	A	2910.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=48;ExcessHet=6.9897;FS=3.489;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.06;ReadPosRankSum=0.387;SOR=0.955;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,28:48:99:762,0,509
chr5	159507928	rs4244405	G	A	146.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=5;ExcessHet=4.7712;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=-9.670e-01;SOR=0.330;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:77,0,71
chr5	159516355	rs4358561	G	A	206.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.00;ReadPosRankSum=0.282;SOR=0.693;VQSLOD=22.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:64:71,0,64
chr5	159516404	rs4590210	C	G	884.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.230e-01;DB;DP=14;ExcessHet=6.9897;FS=5.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.83;ReadPosRankSum=-5.170e-01;SOR=2.186;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,4:14:99:132,0,342
chr5	159516431	rs4441910	G	C	1138.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.088e+00;DB;DP=21;ExcessHet=6.9897;FS=4.200;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=-2.490e-01;SOR=1.393;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:219,0,426
chr5	159521237	rs2546964	T	C	759.20	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.43;SOR=5.892;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:216,15,0
chr5	159640652	rs6556482	G	A	2398.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.15;SOR=3.647;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:792,66,0
chr5	159655233	rs60634726	T	A	111.87	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.37;ReadPosRankSum=0.00;SOR=1.022;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:159655233_T_A:120,0,143:159655233
chr5	159655251	rs59880216	A	T	111.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.253;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.28;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,3:5:99:0|1:159655233_T_A:120,0,143:159655233
chr5	159659273	rs1130435	C	T	5170.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=116;ExcessHet=3.9794;FS=0.999;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.34;ReadPosRankSum=-1.070e-01;SOR=0.775;VQSLOD=6.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,49:116:99:1287,0,1662
chr5	159661723	rs2421775	C	T	2751.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.56;DB;DP=39;ExcessHet=3.9794;FS=2.934;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.19;ReadPosRankSum=-3.370e-01;SOR=1.127;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,20:39:99:597,0,524
chr5	159661754	rs60865693	C	T	788.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.093e+00;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=59.97;MQRankSum=-9.670e-01;POSITIVE_TRAIN_SITE;QD=13.14;ReadPosRankSum=0.104;SOR=0.693;VQSLOD=1.89;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,30:60:99:797,0,817
chr5	159662126	rs4244409	A	G	1097.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.67;SOR=3.841;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:429,36,0
chr5	159665485	rs10056214	G	C	2157.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.38;SOR=3.690;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:756,63,0
chr5	159665523	rs10071756	C	T	4756.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.92;SOR=3.398;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,39:39:99:1|1:159665523_C_T:1800,120,0:159665523
chr5	159665527	rs10056227	G	A	5067.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.95;SOR=3.452;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,41:41:99:1|1:159665523_C_T:1845,123,0:159665523
chr5	159665534	rs10079413	A	G	5421.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=2.948;VQSLOD=19.71;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,49:49:99:1|1:159665523_C_T:2096,147,0:159665523
chr5	159665599	rs2277954	G	A	6493.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.673e+00;DB;DP=100;ExcessHet=3.0103;FS=0.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.60;ReadPosRankSum=0.049;SOR=0.618;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:3042,299,0
chr5	159665726	rs10071871	C	T	14358.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.18;SOR=1.097;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,113:113:99:1|1:159665726_C_T:4999,349,0:159665726
chr5	159665733	rs2277953	C	T	11001.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.52;DB;DP=109;ExcessHet=3.0103;FS=1.048;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.65;ReadPosRankSum=-4.320e-01;SOR=0.774;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,109:109:99:1|1:159665726_C_T:4904,343,0:159665726
chr5	159766379	rs13360090	C	A	1464.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.40;DB;DP=27;ExcessHet=6.9897;FS=7.078;MQ=60.00;MQRankSum=0.00;QD=17.87;ReadPosRankSum=0.366;SOR=2.203;VQSLOD=18.57;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,13:27:99:0|1:159766379_C_A:491,0,496:159766379
chr5	159766380	rs61666605	A	AC	1329.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=27;ExcessHet=6.9897;FS=9.268;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.73;ReadPosRankSum=1.43;SOR=3.207;VQSLOD=3.58;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,13:27:99:0|1:159766379_C_A:491,0,496:159766379
chr5	159776047	rs9216	A	G	489.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.337e+00;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=1.11;SOR=1.609;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,5:16:99:140,0,397
chr5	159776637	rs10053189	C	T	3916.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.19;DB;DP=378;ExcessHet=3.0103;FS=0.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.337;SOR=0.756;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:216,162:378:99:3925,0,5421
chr5	159782175	rs3811998	T	C	43.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.383e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=-4.310e-01;SOR=0.693;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:52:52,0,70
chr5	159830603	rs4921280	T	C	478.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=37;ExcessHet=3.0103;FS=1.378;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.93;ReadPosRankSum=-7.450e-01;SOR=1.119;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,18:37:99:487,0,446
chr5	159831228	rs4244410	T	C	245.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.66;ReadPosRankSum=0.887;SOR=2.833;VQSLOD=20.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:18:254,0,18
chr5	159831664	rs2961939	C	T	191.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=0.431;SOR=0.693;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:69,0,68
chr5	159831803	rs2961940	A	G	1436.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.88;DB;DP=52;ExcessHet=3.9794;FS=0.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.82;ReadPosRankSum=-4.140e-01;SOR=0.848;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,26:52:99:612,0,653
chr5	159832250	rs2910182	A	G	696.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=32;ExcessHet=3.9794;FS=5.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.23;ReadPosRankSum=1.54;SOR=1.784;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,14:32:99:410,0,613
chr5	159833355	rs36082303	A	AT	160.83	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;QD=4.12;ReadPosRankSum=-1.810e-01;SOR=0.885;VQSLOD=5.37;culprit=QD	GT:AD:DP:GQ:PL	0/1:14,4:20:39:39,0,305
chr5	159834330	rs10639397	T	TTGTA	521.46	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.99;SOR=3.611;VQSLOD=6.24;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:360,24,0
chr5	159835173	rs2910186	G	A	1012.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.083;DB;DP=22;ExcessHet=3.9794;FS=4.940;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.09;ReadPosRankSum=-5.390e-01;SOR=1.696;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,12:22:99:405,0,341
chr5	159835658	rs2961944	A	G	1720.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.290e-01;DB;DP=34;ExcessHet=1.5490;FS=0.886;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.31;ReadPosRankSum=-1.027e+00;SOR=0.597;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:902,101,0
chr5	159839211	rs2069277	T	C	164.71	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.94;SOR=1.981;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:176,15,0
chr5	159839530	.	T	TAAAA,TAAAAAA	1005.45	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.28;DP=6;ExcessHet=3.0103;FS=5.079;MQ=60.00;MQRankSum=0.00;QD=16.76;ReadPosRankSum=0.134;SOR=1.679;VQSLOD=5.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,1,5:6:65:423,130,101,94,0,65
chr5	159839545	rs2961948	G	A	182.41	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=26.06;SOR=4.174;VQSLOD=20.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:197,21,0
chr5	159840339	rs147838014	G	GTAC	297.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.784;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.52;ReadPosRankSum=1.40;SOR=0.425;VQSLOD=7.20;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr5	159840688	rs2961949	T	C	1415.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.59;DB;DP=29;ExcessHet=1.5490;FS=10.602;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.23;ReadPosRankSum=0.453;SOR=0.042;VQSLOD=18.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,29:29:87:1145,87,0
chr5	159840700	rs12522744	A	C	244.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.100e+00;DB;DP=24;ExcessHet=3.0103;FS=2.114;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.18;ReadPosRankSum=-1.612e+00;SOR=0.193;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,10:24:99:253,0,520
chr5	159842465	rs2910190	A	G	242.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.35;ReadPosRankSum=-2.100e-01;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:162,12,0
chr5	159851211	rs2910203	G	C	2963.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=5.367;VQSLOD=22.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,20:20:60:779,60,0
chr5	159901514	rs77539809	C	G	127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.680e-01;DB;DP=14;ExcessHet=3.0103;FS=2.027;MQ=60.00;MQRankSum=0.00;QD=9.09;ReadPosRankSum=1.40;SOR=1.329;VQSLOD=21.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,6:14:99:136,0,227
chr5	159901739	rs7727115	G	T	146.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.35;SOR=1.609;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:163,12,0
chr5	159912418	rs2910164	C	G	2877.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.570e-01;DB;DP=41;ExcessHet=3.0103;FS=2.119;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.41;ReadPosRankSum=0.091;SOR=1.051;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,21:41:99:478,0,477
chr5	159992655	rs3812005	T	C	3668.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.83;DB;DP=137;ExcessHet=3.9794;FS=3.766;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.03;ReadPosRankSum=-5.490e-01;SOR=0.593;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,54:137:99:1405,0,2136
chr5	159992751	rs4921150	A	G	5746.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.300e-02;DB;DP=132;ExcessHet=3.9794;FS=4.435;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.60;ReadPosRankSum=1.18;SOR=0.491;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:70,62:132:99:0|1:159992751_A_G:2465,0,3872:159992751
chr5	159992754	rs3812006	T	G	5790.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.91;DB;DP=136;ExcessHet=3.9794;FS=4.357;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=0.787;SOR=0.509;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:71,65:136:99:0|1:159992751_A_G:2484,0,3888:159992751
chr5	159996390	rs7709677	T	G	1511.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=48;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=0.551;SOR=0.670;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,21:48:99:571,0,765
chr5	160016461	rs73304671	C	T	47.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.921;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.91;ReadPosRankSum=0.619;SOR=0.169;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:56:56,0,197
chr5	160016509	rs73304672	G	C	192.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.789e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.68;ReadPosRankSum=-5.900e-01;SOR=0.743;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,7:18:99:201,0,382
chr5	160016961	rs2287666	A	G	1134.31	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=5.353;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:478,36,0
chr5	160018005	rs116245245	T	C	88.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.800e-02;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.41;ReadPosRankSum=2.04;SOR=0.693;VQSLOD=21.65;culprit=QD	GT:AD:DP:GQ:PL	0/1:16,4:20:97:97,0,517
chr5	160030854	rs78279297	C	T	1144.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.130e-01;DB;DP=79;ExcessHet=3.0103;FS=2.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=-6.370e-01;SOR=1.077;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,44:79:99:1153,0,863
chr5	160030870	rs75808118	G	A	1184.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.450;DB;DP=86;ExcessHet=3.0103;FS=5.823;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.428;SOR=1.356;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1193,0,997
chr5	160030922	rs10043577	G	A	1588.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.640e-01;DB;DP=114;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.93;ReadPosRankSum=-1.165e+00;SOR=0.710;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,66:114:99:1597,0,1113
chr5	160031231	rs147368267	T	C	140.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=0.253;SOR=1.329;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:59:149,0,59
chr5	160042903	rs61734665	G	T	1124.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.131e+00;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.61;ReadPosRankSum=0.595;SOR=0.628;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,51:106:99:1133,0,1342
chr5	160042989	rs145223150	G	T	675.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.100;DB;DP=62;ExcessHet=3.0103;FS=2.249;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.89;ReadPosRankSum=1.04;SOR=1.063;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,26:62:99:684,0,956
chr5	160043117	.	T	A	72.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=12.04;ReadPosRankSum=-5.980e-01;SOR=0.693;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:81:81,0,127
chr5	160047265	rs6862674	C	G	1054.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.72;DB;DP=10;ExcessHet=3.0103;FS=14.914;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.03;ReadPosRankSum=-1.026e+00;SOR=5.499;VQSLOD=11.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:142,0,183
chr5	160047759	rs61734666	C	T	2055.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.851e+00;DB;DP=175;ExcessHet=3.0103;FS=1.887;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=-1.820e+00;SOR=0.853;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,83:175:99:2064,0,2542
chr5	160063527	rs3828608	T	C	1673.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.56;SOR=5.186;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:611,45,0
chr5	160097429	rs3828604	T	C	5967.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.26;SOR=1.622;VQSLOD=21.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,71:71:99:2210,213,0
chr5	160097453	rs1990888	A	C	7408.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.66;SOR=1.188;VQSLOD=19.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,91:91:99:2770,273,0
chr5	160097496	rs958912	A	G	8553.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.01;SOR=0.883;VQSLOD=19.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2860,297,0
chr5	160097632	rs958911	G	A	4733.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.42;SOR=2.056;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1489,135,0
chr5	160763821	.	CA	C	477.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.020e-01;DP=43;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.55;ReadPosRankSum=1.59;SOR=0.693;VQSLOD=5.26;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,7:43:57:57,0,871
chr5	160763822	rs252958	A	C	78.99	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=43;ExcessHet=3.9794;FS=2.670;MQ=60.00;MQRankSum=0.00;QD=1.22;ReadPosRankSum=0.137;SOR=0.972;VQSLOD=20.50;culprit=QD	GT:AD:DP:GQ:PL	0/1:26,10:43:99:199,0,864
chr5	160972443	.	TAA	TA,T	3126.98	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.245;DP=76;ExcessHet=3.9794;FS=7.045;MQ=59.87;MQRankSum=0.00;QD=15.11;ReadPosRankSum=-2.620e-01;SOR=0.314;VQSLOD=4.55;culprit=FS	GT:AD:DP:GQ:PL	1/2:2,45,29:76:99:1758,648,476,864,0,857
chr5	160973808	rs370064343	TA	T	57.65	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=19.22;SOR=2.833;VQSLOD=2.89;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:9:73,9,0
chr5	161112693	rs3811995	C	T	468.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.54;SOR=5.136;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:198,15,0
chr5	161113646	rs6556556	A	C	536.51	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.65;SOR=5.283;VQSLOD=20.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	161116903	rs4921402	C	A	1422.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.93;SOR=3.855;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:366,30,0
chr5	161116942	rs3811992	A	G	449.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.15;SOR=3.611;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:208,15,0
chr5	161119071	rs12522663	G	T	12821.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=0.803;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3089,291,0
chr5	161119125	rs13184586	C	G	6528.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.551e+00;DB;DP=82;ExcessHet=0.4576;FS=3.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.00;ReadPosRankSum=0.571;SOR=0.399;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,81:82:99:2431,204,0
chr5	161128409	rs3811991	A	C	804.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.69;ReadPosRankSum=0.431;SOR=4.712;VQSLOD=21.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:242,18,0
chr5	161128761	rs4277944	C	G	10808.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.85;SOR=1.313;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3092,294,0
chr5	161128914	rs3219151	C	T	898.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.36;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=35.05;ReadPosRankSum=0.875;SOR=4.174;VQSLOD=14.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,9:11:42:331,0,42
chr5	161281245	rs1129647	T	C	3355.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980e-01;DB;DP=76;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.24;ReadPosRankSum=-7.270e-01;SOR=0.723;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,38:76:99:923,0,983
chr5	161292685	rs41304896	C	T	4390.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.200e-01;DB;DP=96;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.29;ReadPosRankSum=-7.100e-02;SOR=0.656;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,56:96:99:1351,0,909
chr5	161302728	rs4260711	G	A	3492.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.92;DB;DP=39;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.98;ReadPosRankSum=-7.200e-02;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,23:39:99:718,0,423
chr5	161309752	rs11135172	T	G	2013.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.02;DB;DP=40;ExcessHet=1.5490;FS=8.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.98;ReadPosRankSum=0.070;SOR=2.015;VQSLOD=19.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,15:40:99:418,0,727
chr5	161317770	rs1026447	C	T	478.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.34;ReadPosRankSum=0.967;SOR=3.767;VQSLOD=16.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:72,0,32
chr5	161322889	rs2279020	G	A	1506.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.21;DB;DP=53;ExcessHet=3.9794;FS=10.328;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.08;ReadPosRankSum=1.11;SOR=1.643;VQSLOD=18.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,25:53:99:717,0,755
chr5	161510796	rs209350	T	C	1533.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.531e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.85;ReadPosRankSum=-1.014e+00;SOR=6.184;VQSLOD=14.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:443,36,0
chr5	161522318	rs2963170	G	A	2246.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.91;SOR=8.086;VQSLOD=24.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:663,48,0
chr5	161529571	rs211035	A	G	1114.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.870e-01;DB;DP=8;ExcessHet=3.0103;FS=3.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.34;ReadPosRankSum=0.157;SOR=0.840;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,7:8:18:196,0,18
chr5	161529720	rs211034	A	G	73.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.50;SOR=2.303;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	161579441	rs211013	A	G	3562.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.172e+00;DB;DP=85;ExcessHet=1.5490;FS=6.367;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.48;ReadPosRankSum=-7.100e-02;SOR=0.357;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,39:85:99:864,0,1179
chr5	162887650	rs2303076	G	A	1711.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.109;DB;DP=60;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=1.72;SOR=0.668;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:678,0,740
chr5	162890953	rs380101	G	A	5257.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.87;SOR=1.030;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1465,156,0
chr5	162891894	rs3756648	G	A	2788.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=42;ExcessHet=3.9794;FS=0.818;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.45;ReadPosRankSum=-1.053e+00;SOR=0.613;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,22:42:99:630,0,543
chr5	162905580	rs13183712	G	T	486.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.26;ReadPosRankSum=0.880;SOR=1.051;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:172,0,236
chr5	162938940	rs11307015	GT	G	4782.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.100e-01;DB;DP=78;ExcessHet=6.9897;FS=3.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.76;ReadPosRankSum=0.297;SOR=0.482;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,45:78:99:1585,0,1044
chr5	162939534	rs6874065	G	A	771.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.740e+00;DB;DP=17;ExcessHet=6.9897;FS=0.000;MQ=59.85;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.08;ReadPosRankSum=0.279;SOR=0.693;VQSLOD=6.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:241,0,336
chr5	162940739	rs964945	G	A	5156.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.75;SOR=1.839;VQSLOD=20.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:944,72,0
chr5	162944408	rs4869089	A	G	1000.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.43;DB;DP=12;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=0.038;SOR=0.629;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,5:12:99:137,0,240
chr5	162944709	rs7733775	A	G	5225.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.674e+00;DB;DP=83;ExcessHet=6.9897;FS=0.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.55;ReadPosRankSum=0.990;SOR=0.628;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,44:83:99:1167,0,1060
chr5	167182055	rs1862875	G	A	3961.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.68;DB;DP=72;ExcessHet=3.9794;FS=6.254;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.05;ReadPosRankSum=1.40;SOR=0.360;VQSLOD=6.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2144,215,0
chr5	167302880	rs11290475	CT	C	420.20	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.887;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.25;ReadPosRankSum=-1.570e-01;SOR=0.601;VQSLOD=5.82;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,5:8:2:125,0,2
chr5	167303317	rs1862198	G	A	3878.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.68;DB;DP=55;ExcessHet=3.9794;FS=2.830;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.01;ReadPosRankSum=0.968;SOR=0.498;VQSLOD=6.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1824,165,0
chr5	167420296	rs11955430	T	G	308.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.01;ReadPosRankSum=-2.332e+00;SOR=1.162;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,11:22:99:317,0,264
chr5	167489049	rs72549552	CT	C,CTT	895.38	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.900e-02;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.27;ReadPosRankSum=-1.317e+00;SOR=0.604;VQSLOD=5.69;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,7,3:10:78:223,78,103,171,0,214
chr5	167517505	rs2053049	C	G	407.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.439;DB;DP=8;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.13;ReadPosRankSum=0.566;SOR=2.303;VQSLOD=21.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:99:156,0,101
chr5	167553672	rs1529684	A	G	93.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.72;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:66:102,0,66
chr5	167554106	rs1560650	G	A	455.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.49;DB;DP=32;ExcessHet=3.0103;FS=4.170;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-2.080e-01;SOR=0.184;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:464,0,492
chr5	167566600	rs1432822	T	A	7179.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.56;DB;DP=99;ExcessHet=3.0103;FS=3.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-7.780e-01;SOR=0.481;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:2941,296,0
chr5	167576239	rs10040595	A	T	1129.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.31;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.90;ReadPosRankSum=-3.420e-01;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:280,0,195
chr5	167576513	rs35438448	T	TG	4309.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.470e-01;DB;DP=76;ExcessHet=6.9897;FS=0.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.90;ReadPosRankSum=-1.727e+00;SOR=0.733;VQSLOD=6.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1265,0,1346
chr5	167589814	rs9637846	G	A	905.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.970e-01;DB;DP=110;ExcessHet=3.0103;FS=0.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.23;ReadPosRankSum=-4.520e-01;SOR=0.792;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,42:110:99:914,0,1764
chr5	167625581	rs34571245	C	A	220.36	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.496e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.03;ReadPosRankSum=0.317;SOR=0.693;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,10:11:10:229,0,10
chr5	167625657	rs34187866	G	C	266.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=14;ExcessHet=3.0103;FS=5.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.02;ReadPosRankSum=-6.400e-02;SOR=0.470;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,9:14:99:275,0,142
chr5	167625771	rs1874460	G	C	867.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.55;ReadPosRankSum=1.96;SOR=0.565;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,32:64:99:876,0,803
chr5	167626142	rs2291784	G	A	685.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.50;DB;DP=54;ExcessHet=3.0103;FS=5.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.69;ReadPosRankSum=0.229;SOR=1.730;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,22:54:99:694,0,975
chr5	167626696	rs3797719	A	G	449.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.079;DB;DP=32;ExcessHet=3.0103;FS=3.952;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=1.19;SOR=0.195;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,17:32:99:458,0,431
chr5	167631884	rs6887745	A	G	449.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.56;ReadPosRankSum=-1.282e+00;SOR=3.767;VQSLOD=16.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:148,0,29
chr5	167645888	rs1363560	T	C	2710.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.870e-01;DB;DP=107;ExcessHet=3.9794;FS=0.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.21;ReadPosRankSum=-8.740e-01;SOR=0.628;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,51:107:99:1198,0,1288
chr5	167653364	rs3733985	T	C	3119.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.75;DB;DP=52;ExcessHet=3.9794;FS=0.793;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=-4.960e-01;SOR=0.566;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:831,0,652
chr5	167653394	rs3733986	A	G	1896.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.022;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.32;ReadPosRankSum=-5.860e-01;SOR=0.714;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:530,0,371
chr5	167798207	rs2287704	A	G	405.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.450e+00;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.91;ReadPosRankSum=-3.660e-01;SOR=0.859;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:59:165,0,59
chr5	167798585	rs2287703	C	T	5419.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.735e+00;DB;DP=80;ExcessHet=3.0103;FS=9.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.21;ReadPosRankSum=-6.550e-01;SOR=0.232;VQSLOD=19.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2478,238,0
chr5	167812698	rs13169010	A	G	346.80	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.345e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.77;ReadPosRankSum=-4.050e-01;SOR=1.765;VQSLOD=23.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:204,0,133
chr5	167835766	rs6887919	T	C	816.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.66;ReadPosRankSum=1.35;SOR=0.509;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:333,0,438
chr5	167837202	rs888888	C	T	488.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.56;ReadPosRankSum=-5.240e-01;SOR=2.584;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:62:62,0,118
chr5	167841014	rs11134511	A	C	188.39	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=4;ExcessHet=1.5490;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.55;ReadPosRankSum=-6.740e-01;SOR=2.303;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:37:72,0,37
chr5	167850748	rs12054944	A	G	9123.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.353e+00;DB;DP=371;ExcessHet=3.9794;FS=0.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.36;ReadPosRankSum=2.09;SOR=0.639;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:185,186:371:99:4314,0,4665
chr5	167851168	rs4976606	A	G	2626.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=107;ExcessHet=3.9794;FS=0.491;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.62;ReadPosRankSum=-3.700e-01;SOR=0.648;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:60,47:107:99:1292,0,1614
chr5	167851362	rs10866629	T	C	1453.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.84;DB;DP=28;ExcessHet=3.9794;FS=11.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.07;ReadPosRankSum=0.695;SOR=2.808;VQSLOD=13.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,9:28:99:266,0,542
chr5	167858462	rs11279828	TCTGGCTGG	T,TCTGG	7651.17	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=2.783;VQSLOD=5.61;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,32,28:60:99:2470,1165,1269,1308,0,1221
chr5	167868430	rs9313415	A	T	211.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.83;SOR=0.340;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:167868430_A_T:150,0,450:167868430
chr5	167868431	rs9313416	C	T	211.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=1.83;SOR=0.340;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:6,4:10:99:0|1:167868430_A_T:150,0,450:167868430
chr5	167868930	rs3948557	G	A	1705.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=31;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.91;ReadPosRankSum=1.60;SOR=0.765;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,22:31:99:744,0,259
chr5	167869031	rs7723552	C	T	731.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.282e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.50;ReadPosRankSum=1.28;SOR=1.609;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:29:154,0,29
chr5	167881029	rs111457550	TGGA	T	2344.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.640;DB;DP=54;ExcessHet=3.9794;FS=0.692;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.38;ReadPosRankSum=-1.210e-01;SOR=0.793;VQSLOD=7.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,27:54:99:1043,0,1135
chr5	167913510	rs244903	G	A	3078.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.307;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.63;ReadPosRankSum=2.55;SOR=0.708;VQSLOD=22.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,34:67:99:735,0,761
chr5	167913603	rs193466	C	T	1502.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.189e+00;DB;DP=53;ExcessHet=1.5490;FS=2.113;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.89;ReadPosRankSum=-1.700e-01;SOR=1.115;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,29:53:99:617,0,615
chr5	167913661	rs35439881	CAG	C	841.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.230e-01;DB;DP=29;ExcessHet=3.9794;FS=3.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.29;ReadPosRankSum=1.11;SOR=0.260;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,16:29:99:633,0,503
chr5	167914924	rs2307771	AC	A	70	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.67;SOR=2.303;VQSLOD=5.15;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	167919623	rs184957	T	A	2332.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.333e+00;DB;DP=34;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.44;ReadPosRankSum=1.29;SOR=0.640;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,15:34:99:421,0,581
chr5	167921047	rs2432642	C	G	2293.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.217e+00;DB;DP=33;ExcessHet=3.9794;FS=5.025;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=0.973;SOR=0.307;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,16:33:99:475,0,532
chr5	167933673	rs34318878	C	CT	807.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.219e+00;DB;DP=34;ExcessHet=3.9794;FS=0.745;MQ=59.98;MQRankSum=0.00;QD=9.84;ReadPosRankSum=-5.780e-01;SOR=0.598;VQSLOD=5.74;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,18:34:99:378,0,308
chr5	167943827	rs653568	G	A	5523.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=85;ExcessHet=3.9794;FS=2.747;MQ=59.99;MQRankSum=0.887;POSITIVE_TRAIN_SITE;QD=19.59;ReadPosRankSum=-2.520e-01;SOR=0.536;VQSLOD=2.57;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:36,49:85:99:1377,0,922
chr5	167956220	rs2432648	C	T	49.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.854;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.22;ReadPosRankSum=0.619;SOR=0.307;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,160
chr5	167956362	rs1870053	C	G	1682.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.970e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.94;ReadPosRankSum=0.700;SOR=1.228;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:102,0,139
chr5	168098463	rs292486	A	G	10393.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.179;DB;DP=141;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.92;ReadPosRankSum=-1.199e+00;SOR=0.768;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,78:141:99:2111,0,1579
chr5	168100545	rs292487	T	A	100.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.14;ReadPosRankSum=-5.240e-01;SOR=1.022;VQSLOD=23.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:108,0,71
chr5	168110788	rs111998101	A	C	220.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.53;ReadPosRankSum=0.619;SOR=0.693;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:44:229,0,44
chr5	168175040	rs4502845	T	G	379.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.101e+00;DB;DP=6;ExcessHet=1.5490;FS=2.993;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.51;ReadPosRankSum=0.281;SOR=0.172;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:194,18,0
chr5	168195432	rs11424849	A	AG	2350.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.07;SOR=5.640;VQSLOD=6.38;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,19:19:57:642,57,0
chr5	168212951	rs891921	A	G	3910.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.65;DB;DP=53;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.42;ReadPosRankSum=0.356;SOR=0.698;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,27:53:99:861,0,643
chr5	168216489	rs2247645	G	A	709.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.190e-01;DB;DP=17;ExcessHet=3.9794;FS=2.674;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.64;ReadPosRankSum=-1.980e-01;SOR=0.286;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,9:17:99:288,0,299
chr5	168216767	rs891928	C	T	695.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.300e-02;DB;DP=19;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=1.31;SOR=0.509;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:288,0,300
chr5	168216879	rs891927	T	A	128.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.32;ReadPosRankSum=1.38;SOR=0.941;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:68,0,71
chr5	168233413	rs3797716	G	A	10472.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.26;DB;DP=195;ExcessHet=3.9794;FS=0.563;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.90;ReadPosRankSum=0.925;SOR=0.620;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,106:195:99:2717,0,2142
chr5	168244256	rs67968410	G	C	3621.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.700e-02;DB;DP=98;ExcessHet=6.9897;FS=1.637;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.03;ReadPosRankSum=0.148;SOR=0.580;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,53:98:99:1393,0,1243
chr5	168244506	rs35712765	G	GA	3277.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.900e-02;DB;DP=45;ExcessHet=3.9794;FS=1.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.61;ReadPosRankSum=0.979;SOR=0.942;VQSLOD=7.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:30,15:45:99:471,0,1078
chr5	168244543	rs905799	A	G	2095.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=26;ExcessHet=3.9794;FS=2.600;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.09;ReadPosRankSum=0.493;SOR=0.164;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,11:26:99:358,0,510
chr5	168250429	rs1875977	C	T	2710.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.92;DB;DP=38;ExcessHet=3.9794;FS=7.485;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.59;ReadPosRankSum=-1.160e+00;SOR=0.205;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,21:38:99:574,0,481
chr5	168310092	rs1553536	G	T	63.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.19;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:35:71,0,35
chr5	168310519	.	T	C	49.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.420e-01;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=8.21;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:58:58,0,113
chr5	168620435	rs11744813	C	A	325.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.116e+00;DB;DP=18;ExcessHet=3.0103;FS=6.107;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.07;ReadPosRankSum=0.00;SOR=0.064;VQSLOD=22.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,12:18:99:334,0,167
chr5	168620720	rs79192318	C	T	53.41	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.11;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=-8.420e-01;SOR=0.307;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:62:62,0,129
chr5	168620774	rs77780102	T	C	62.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.43;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:71:71,0,140
chr5	168671698	rs10063591	A	T	330.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=51;ExcessHet=3.0103;FS=4.560;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.48;ReadPosRankSum=-2.130e-01;SOR=1.594;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,16:51:99:339,0,785
chr5	168690391	rs11134566	G	A	31.37	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:27:40,0,27
chr5	168690612	rs62376934	A	G	4556.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.01;SOR=1.574;VQSLOD=19.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,45:45:99:1|1:168690612_A_G:1786,135,0:168690612
chr5	168690635	rs62376935	C	T	1007.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.010e-01;DB;DP=67;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.03;ReadPosRankSum=0.084;SOR=0.788;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,41:67:99:0|1:168690612_A_G:1016,0,587:168690612
chr5	168690974	rs150860325	GT	G	105.14	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=6.18;ReadPosRankSum=0.875;SOR=0.293;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:35:93,0,35
chr5	169021098	rs17644562	A	G	637.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.986;DB;DP=32;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.96;ReadPosRankSum=-4.570e-01;SOR=0.532;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:472,0,519
chr5	169021126	rs55679721	C	T	954.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.480e-01;DB;DP=47;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.60;ReadPosRankSum=-5.300e-02;SOR=0.591;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,24:47:99:678,0,604
chr5	169021323	rs17644580	G	A	1711.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.820e-01;DB;DP=54;ExcessHet=3.9794;FS=3.332;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.26;ReadPosRankSum=-1.005e+00;SOR=0.999;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,31:54:99:891,0,622
chr5	169021610	rs4493692	C	T	4945.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.957;DB;DP=73;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.02;ReadPosRankSum=-5.830e-01;SOR=0.686;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,73:73:99:2200,219,0
chr5	169021702	rs17558484	A	G	994.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.764e+00;DB;DP=28;ExcessHet=3.9794;FS=1.337;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.62;ReadPosRankSum=1.06;SOR=0.412;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,14:28:99:382,0,422
chr5	169025789	rs3815729	G	A	510.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.980e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.46;ReadPosRankSum=-9.890e-01;SOR=0.610;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:95:95,0,222
chr5	169025924	rs17644660	C	T	1268.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.060;DB;DP=42;ExcessHet=3.9794;FS=5.681;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.68;ReadPosRankSum=0.747;SOR=0.291;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,23:42:99:549,0,545
chr5	169028481	rs3797713	T	C	6643.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.03;DB;DP=110;ExcessHet=3.9794;FS=5.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.29;ReadPosRankSum=0.670;SOR=0.981;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,110:110:99:3381,330,0
chr5	169031150	rs3777084	T	C	1828.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.54;DB;DP=26;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.88;ReadPosRankSum=0.110;SOR=0.771;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:1066,78,0
chr5	169031218	rs2042248	G	T	1053.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.286;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=1.11;SOR=0.824;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:518,45,0
chr5	169064548	rs264868	C	T	223.01	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.88;ReadPosRankSum=1.15;SOR=2.833;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:131,12,0
chr5	169081606	rs4867873	G	T	364.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.090e-01;DB;DP=43;ExcessHet=3.0103;FS=1.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.47;ReadPosRankSum=1.28;SOR=0.385;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,17:43:99:373,0,687
chr5	169097474	rs2306564	G	C	1775.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=38;ExcessHet=1.5490;FS=1.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.00;ReadPosRankSum=-3.360e-01;SOR=1.212;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,18:38:99:533,0,517
chr5	169097505	rs111473735	T	TTTTTA	1999.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.346;DB;DP=62;ExcessHet=3.9794;FS=2.923;MQ=60.00;MQRankSum=0.00;QD=16.66;ReadPosRankSum=1.78;SOR=1.044;VQSLOD=5.54;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,23:62:99:1074,0,1915
chr5	169097940	rs2306565	G	A	2264.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.819;DB;DP=34;ExcessHet=1.5490;FS=2.389;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.74;ReadPosRankSum=1.34;SOR=1.179;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:22,12:34:99:1|0:169097936_T_C:357,0,649:169097936
chr5	169101599	rs2244445	C	T	1143.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=21;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.00;ReadPosRankSum=0.952;SOR=1.132;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,10:21:99:280,0,256
chr5	169126326	rs264847	A	G	954.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=76;ExcessHet=3.0103;FS=1.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.56;ReadPosRankSum=-6.350e-01;SOR=0.976;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,36:76:99:963,0,1076
chr5	169126552	rs2112704	G	A	602.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.729e+00;DB;DP=59;ExcessHet=3.0103;FS=10.187;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=1.26;SOR=0.144;VQSLOD=19.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,22:59:99:611,0,1220
chr5	169126738	rs264846	T	A	831.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.22;DB;DP=16;ExcessHet=3.9794;FS=3.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.78;ReadPosRankSum=0.397;SOR=0.260;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,11:16:92:328,0,92
chr5	169145605	rs79390718	C	T	469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.498e+00;DB;DP=25;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.77;ReadPosRankSum=0.027;SOR=0.963;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:478,0,386
chr5	169267589	rs113470914	C	CGAT	1174.01	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.740e-01;DB;DP=8;ExcessHet=3.9794;FS=3.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.35;ReadPosRankSum=0.776;SOR=2.303;VQSLOD=6.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,7:8:18:266,0,18
chr5	169267784	rs261623	G	A	3126.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.537;DB;DP=61;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-9.000e-03;SOR=0.668;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,28:61:99:817,0,832
chr5	169268089	rs261624	C	T	840.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.908e+00;DB;DP=20;ExcessHet=6.9897;FS=2.133;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=-9.150e-01;SOR=0.327;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,8:20:99:242,0,465
chr5	169291267	rs73801668	C	A	1821.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.358e+00;DB;DP=56;ExcessHet=6.9897;FS=0.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.20;ReadPosRankSum=-5.100e-02;SOR=0.582;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,31:56:99:777,0,638
chr5	169302189	rs11390591	T	TA	861.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.527e+00;DB;DP=65;ExcessHet=3.0103;FS=11.364;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.25;ReadPosRankSum=0.467;SOR=0.143;VQSLOD=3.22;culprit=FS	GT:AD:DP:GQ:PL	0/1:30,35:65:99:870,0,721
chr5	169310213	rs17646221	A	C	5572.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.02;DB;DP=86;ExcessHet=3.9794;FS=0.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.41;ReadPosRankSum=0.487;SOR=0.746;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,45:86:99:1119,0,1043
chr5	169422920	rs2059110	A	G	821.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.97;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=1.84;SOR=0.495;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,14:14:42:1|1:169422918_C_A:500,42,0:169422918
chr5	169435228	rs147027601	AC	A	122.56	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=8.75;SOR=1.828;VQSLOD=0.443;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,4:4:12:139,12,0
chr5	169435924	rs10064355	T	G	525.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.314e+00;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.04;ReadPosRankSum=0.380;SOR=1.828;VQSLOD=23.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:200,15,0
chr5	169454831	rs13175232	G	A	3617.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.357e+00;DB;DP=44;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.59;ReadPosRankSum=0.792;SOR=0.752;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,44:44:99:1|1:169454831_G_A:2061,141,0:169454831
chr5	169454833	rs13157227	T	C	3617.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.086;DB;DP=47;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.02;ReadPosRankSum=0.991;SOR=0.691;VQSLOD=22.33;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,47:47:99:1|1:169454831_G_A:2061,141,0:169454831
chr5	169454941	rs9791113	C	G	2901.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.890e-01;DB;DP=52;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.29;ReadPosRankSum=-1.920e-01;SOR=0.674;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1626,156,0
chr5	169455225	rs9790867	T	G	820.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.391e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.09;ReadPosRankSum=-1.271e+00;SOR=0.918;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:401,36,0
chr5	169455716	rs13180085	A	C	344.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.37;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.75;ReadPosRankSum=0.135;SOR=0.818;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:166,12,0
chr5	169455744	rs72447654	AACAC	A	122.13	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=30.65;SOR=1.179;VQSLOD=4.57;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:169455744_AACAC_A:135,9,0:169455744
chr5	169455771	rs13180215	A	G	121.82	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.7918;FS=0.000;MQ=60.00;QD=28.07;SOR=1.179;VQSLOD=19.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:169455744_AACAC_A:135,9,0:169455744
chr5	169461229	rs11392569	G	GA	1151.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.770e-01;DB;DP=27;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.57;ReadPosRankSum=-8.780e-01;SOR=1.211;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,27:27:81:784,81,0
chr5	169461399	rs3763047	G	A	7880.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.604;DB;DP=188;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.36;ReadPosRankSum=-2.090e-01;SOR=0.683;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,188:188:99:5851,563,0
chr5	169461547	rs3763048	C	T	5005.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.35;DB;DP=109;ExcessHet=1.5490;FS=5.291;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.86;ReadPosRankSum=0.161;SOR=1.065;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3501,326,0
chr5	169461704	rs3763049	C	T	472.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.88;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.70;ReadPosRankSum=-4.490e-01;SOR=0.340;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:172,15,0
chr5	169468243	rs2270895	A	G	2871.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.090e-01;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.61;ReadPosRankSum=0.062;SOR=1.089;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1263,105,0
chr5	169468929	rs2270897	A	G	4847.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.452e+00;DB;DP=62;ExcessHet=3.0103;FS=2.799;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.06;ReadPosRankSum=-2.328e+00;SOR=1.026;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:1894,186,0
chr5	169472765	rs6884561	C	G	6693.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.680;DB;DP=114;ExcessHet=3.9794;FS=0.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.07;ReadPosRankSum=-3.670e-01;SOR=0.646;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,60:114:99:1588,0,1485
chr5	169472788	rs10074769	A	C	1752.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.456;DB;DP=146;ExcessHet=3.0103;FS=3.086;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.00;ReadPosRankSum=-4.250e-01;SOR=0.446;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,73:146:99:1761,0,1786
chr5	169472993	rs10060018	C	G	892.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.268e+00;DB;DP=60;ExcessHet=3.0103;FS=4.719;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.87;ReadPosRankSum=1.75;SOR=1.569;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,29:60:99:901,0,994
chr5	169477170	rs10068701	C	T	641.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.64;ReadPosRankSum=-6.650e-01;SOR=0.634;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:650,0,584
chr5	169483645	rs115664453	C	T	593.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.710e-01;DB;DP=60;ExcessHet=3.0103;FS=3.885;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.89;ReadPosRankSum=-3.150e-01;SOR=0.334;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,25:60:99:602,0,1019
chr5	169496051	rs6868503	T	C	4126.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.66;DB;DP=41;ExcessHet=3.9794;FS=3.888;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.86;ReadPosRankSum=0.203;SOR=1.165;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,26:41:99:922,0,487
chr5	169504743	rs1045168	T	C	4536.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=148;ExcessHet=3.9794;FS=2.333;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.62;ReadPosRankSum=0.242;SOR=0.781;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,78:148:99:1999,0,1705
chr5	169504995	rs2270899	C	T	1679.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.699e+00;DB;DP=37;ExcessHet=1.5490;FS=2.097;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=-3.320e-01;SOR=1.114;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,11:37:99:205,0,744
chr5	169506844	rs72828650	C	G	215.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.37;ReadPosRankSum=0.282;SOR=0.473;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:28:164,0,28
chr5	169506954	rs6879798	G	C	1490.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.08;DB;DP=26;ExcessHet=1.5490;FS=1.212;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=-1.470e-01;SOR=0.941;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,26:26:78:952,78,0
chr5	169507067	rs9885452	A	G	6160.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.140e-01;DB;DP=128;ExcessHet=6.9897;FS=1.801;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.39;ReadPosRankSum=-6.800e-01;SOR=0.825;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,67:128:99:1540,0,1437
chr5	169509929	rs55803405	G	A	674.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.340e-01;DB;DP=47;ExcessHet=3.0103;FS=1.361;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.35;ReadPosRankSum=-1.500e-01;SOR=0.394;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,26:47:99:683,0,576
chr5	169510023	rs9307	A	G	470.40	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.582;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.13;ReadPosRankSum=-1.025e+00;SOR=0.776;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:231,18,0
chr5	169661414	rs918506	C	A	2062.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.12;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.96;ReadPosRankSum=-1.515e+00;SOR=0.917;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:336,0,207
chr5	169661994	rs957998	G	C	3536.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.289;DB;DP=42;ExcessHet=3.0103;FS=1.110;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.42;ReadPosRankSum=0.907;SOR=0.505;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,26:42:99:694,0,403
chr5	169675693	rs80044664	AT	A	1570.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.354;DB;DP=91;ExcessHet=3.0103;FS=3.036;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.26;ReadPosRankSum=1.17;SOR=1.075;VQSLOD=7.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:45,46:91:99:1579,0,1499
chr5	169679354	rs1546451	C	T	765.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.19;ReadPosRankSum=0.389;SOR=0.719;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,28:58:99:774,0,711
chr5	169679947	rs6880961	C	T	316.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.321;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.08;ReadPosRankSum=-1.287e+00;SOR=1.609;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,10:15:99:325,0,126
chr5	169680139	rs34192428	G	C	1522.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.363;DB;DP=135;ExcessHet=3.0103;FS=0.640;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.28;ReadPosRankSum=-3.810e-01;SOR=0.796;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:70,65:135:99:1531,0,1655
chr5	169685163	rs315717	C	T	4626.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.400e-01;DB;DP=61;ExcessHet=3.0103;FS=2.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.88;ReadPosRankSum=0.632;SOR=0.976;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,27:61:99:710,0,921
chr5	169685708	rs1702380	G	T	4568.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.81;DB;DP=34;ExcessHet=3.0103;FS=6.193;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.59;ReadPosRankSum=1.64;SOR=2.014;VQSLOD=20.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,18:34:99:662,0,427
chr5	169686007	rs432621	T	C	2183.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.76;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.12;ReadPosRankSum=0.047;SOR=0.733;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:261,0,320
chr5	169689604	rs395407	G	C	968.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.050e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.25;ReadPosRankSum=-2.450e-01;SOR=0.693;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:380,30,0
chr5	169695446	rs2292254	C	T	2094.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.099e+00;DB;DP=19;ExcessHet=3.0103;FS=15.129;MQ=59.65;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.19;ReadPosRankSum=-1.330e-01;SOR=2.833;VQSLOD=-1.481e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,19:19:56:693,56,0
chr5	169695611	rs366122	C	A	896.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.834e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.38;ReadPosRankSum=-7.280e-01;SOR=0.368;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:296,27,0
chr5	169697707	rs315745	G	A	2842.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.95;DB;DP=24;ExcessHet=3.0103;FS=4.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.24;ReadPosRankSum=1.56;SOR=3.134;VQSLOD=18.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:939,72,0
chr5	169698028	rs315744	A	G	4071.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.02;DB;DP=33;ExcessHet=3.0103;FS=2.461;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=-9.350e-01;SOR=0.429;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,33:33:99:1219,99,0
chr5	169701546	rs4867953	G	C	74.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.515e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.25;ReadPosRankSum=-1.242e+00;SOR=0.283;VQSLOD=22.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:83:83,0,226
chr5	169702390	rs2271146	C	A	587.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.530e-01;DB;DP=38;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-1.300e+00;SOR=0.743;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,23:38:99:596,0,369
chr5	169715038	rs315721	A	G	3309.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.24;DB;DP=88;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=0.612;SOR=0.717;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,48:88:99:1159,0,891
chr5	169724767	rs315731	G	C	1454.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.45;DB;DP=19;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.33;ReadPosRankSum=1.14;SOR=2.461;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:337,0,362
chr5	169805411	rs314156	T	C	237.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.33;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=1.10;SOR=1.270;VQSLOD=23.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:93:246,0,93
chr5	169805629	rs2656841	T	G	4510.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.37;DB;DP=74;ExcessHet=1.5490;FS=4.837;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.99;ReadPosRankSum=1.16;SOR=0.365;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,74:74:99:1|1:169805629_T_G:3344,226,0:169805629
chr5	169805630	rs2656842	G	T	4510.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.275e+00;DB;DP=75;ExcessHet=1.5490;FS=4.841;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.77;ReadPosRankSum=1.13;SOR=0.352;VQSLOD=22.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,75:75:99:1|1:169805629_T_G:3344,226,0:169805629
chr5	169805956	rs2301149	C	G	1165.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=144;ExcessHet=3.0103;FS=3.154;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.09;ReadPosRankSum=-6.520e-01;SOR=1.004;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:93,51:144:99:1174,0,2295
chr5	169806001	rs314157	T	C	5227.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.14;DB;DP=109;ExcessHet=1.5490;FS=0.545;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.66;ReadPosRankSum=2.37;SOR=0.642;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,107:109:99:3204,277,0
chr5	169806146	rs2301148	C	T	106.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.80;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.64;ReadPosRankSum=1.40;SOR=1.051;VQSLOD=22.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:99:115,0,407
chr5	169810966	rs703507	A	C	3219.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.61;DB;DP=61;ExcessHet=1.5490;FS=0.854;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.39;ReadPosRankSum=-6.750e-01;SOR=0.823;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,61:61:99:1980,183,0
chr5	169812194	rs2071157	C	T	1061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=36;ExcessHet=3.9794;FS=7.879;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.38;ReadPosRankSum=0.872;SOR=1.754;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,19:36:99:509,0,425
chr5	169812303	rs2071156	G	A	2588.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=81;ExcessHet=3.9794;FS=2.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.78;ReadPosRankSum=0.780;SOR=0.534;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,41:81:99:1172,0,1032
chr5	169812697	.	TAAAG	T	994.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.16;DP=29;ExcessHet=3.9794;FS=0.997;MQ=59.99;MQRankSum=0.00;QD=14.20;ReadPosRankSum=-6.110e-01;SOR=0.918;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,14:29:99:0|1:169812697_TAAAG_T:543,0,1971:169812697
chr5	169812703	rs370060537	GA	G	997.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.56;DB;DP=29;ExcessHet=3.9794;FS=1.002;MQ=59.99;MQRankSum=0.00;QD=14.45;SOR=0.960;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,14:29:99:0|1:169812697_TAAAG_T:543,0,1971:169812697
chr5	169812714	rs145760067	GGTCACACAGTAT	G	747.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.86;DB;DP=27;ExcessHet=3.9794;FS=1.092;MQ=60.00;MQRankSum=0.00;QD=12.45;ReadPosRankSum=-2.400e-02;SOR=0.877;VQSLOD=5.95;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:27:99:452,0,1661
chr5	169812852	rs66790103	G	A	165.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=-6.520e-01;SOR=1.609;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:66:68,0,66
chr5	169910084	rs4867968	G	T	5525.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=0.717;VQSLOD=19.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1467,143,0
chr5	169987906	rs55691638	A	G	89.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.240e-01;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.85;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:67:98,0,67
chr5	170145584	rs6555913	G	A	218.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.48;ReadPosRankSum=0.850;SOR=0.551;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,4:16:84:84,0,357
chr5	170149518	rs56741677	C	CA	87.45	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.58;ReadPosRankSum=1.83;SOR=1.329;VQSLOD=6.85;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:6:39:96,0,39
chr5	170149554	rs2277951	T	C	408.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.746e+00;DB;DP=11;ExcessHet=3.9794;FS=3.203;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.74;ReadPosRankSum=0.723;SOR=1.885;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:243,0,138
chr5	170149573	rs2277952	C	T	1053.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.46;DB;DP=14;ExcessHet=3.9794;FS=5.229;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.35;ReadPosRankSum=0.717;SOR=3.193;VQSLOD=18.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:563,42,0
chr5	170149674	rs12514966	A	T	1442.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.630e-01;DB;DP=54;ExcessHet=3.9794;FS=1.651;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.99;ReadPosRankSum=0.833;SOR=0.523;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,25:54:99:671,0,866
chr5	170159997	rs17650650	C	T	478.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.135;DB;DP=8;ExcessHet=3.9794;FS=2.831;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.91;ReadPosRankSum=-4.140e-01;SOR=1.863;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:69:150,0,69
chr5	170160749	rs4868018	G	A	2261.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.74;DB;DP=41;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.93;ReadPosRankSum=-3.370e-01;SOR=0.690;VQSLOD=22.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1158,123,0
chr5	170162666	rs1363712	T	C	881.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.670;DB;DP=34;ExcessHet=3.9794;FS=8.677;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.07;ReadPosRankSum=0.479;SOR=1.708;VQSLOD=19.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,13:34:99:331,0,617
chr5	170215368	rs11306016	TA	T	330.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.103;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=59.66;MQRankSum=0.775;QD=9.19;ReadPosRankSum=1.36;SOR=0.425;VQSLOD=0.289;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:19:1|1:170215368_TA_T:244,19,0:170215368
chr5	170215394	rs3792811	A	C	1983.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.49;ReadPosRankSum=-1.770e+00;SOR=3.223;VQSLOD=18.86;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:46:1|1:170215368_TA_T:594,46,0:170215368
chr5	170215490	rs4868028	T	C	5928.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.19;DB;DP=60;ExcessHet=3.0103;FS=1.018;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.94;ReadPosRankSum=1.53;SOR=0.602;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,60:60:99:2210,180,0
chr5	170221379	.	CAA	C	1173.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.024;DP=31;ExcessHet=3.9794;FS=2.325;MQ=59.99;MQRankSum=0.00;QD=13.49;ReadPosRankSum=0.746;SOR=0.434;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,6:31:99:148,0,370
chr5	170235849	rs72837689	G	C	532.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.330e-01;DB;DP=41;ExcessHet=3.0103;FS=5.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.98;ReadPosRankSum=-8.220e-01;SOR=0.185;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,20:41:99:541,0,637
chr5	170288922	rs11749349	A	G	631.71	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.660e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.59;ReadPosRankSum=1.01;SOR=0.631;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,4:7:99:114,0,99
chr5	170289221	rs10475962	T	G	568.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=19;ExcessHet=6.9897;FS=2.701;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.38;ReadPosRankSum=-3.440e-01;SOR=0.376;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,8:19:99:209,0,272
chr5	170319133	rs143842890	CTT	C	135.09	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.02;SOR=3.611;VQSLOD=4.82;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:66,6,0
chr5	170322919	rs2287894	T	A	1134.90	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.09;ReadPosRankSum=1.15;SOR=5.353;VQSLOD=13.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:24:111,0,24
chr5	170323258	rs2287893	A	G	1342.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.680e-01;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.99;ReadPosRankSum=-1.219e+00;SOR=0.748;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,9:29:99:250,0,581
chr5	170336582	rs368924803	C	CT	216.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.169;DB;DP=9;ExcessHet=6.9897;FS=5.962;MQ=59.26;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=6.20;ReadPosRankSum=-6.400e-01;SOR=1.971;VQSLOD=5.50;culprit=FS	GT:AD:DP:GQ:PL	0/1:3,5:9:61:72,0,61
chr5	170336614	rs1833596	G	C	1085.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.170e-01;DB;DP=37;ExcessHet=6.9897;FS=0.000;MQ=59.67;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.90;ReadPosRankSum=-2.550e-01;SOR=0.757;VQSLOD=4.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,19:37:99:469,0,457
chr5	170341326	rs113299932	TTA	T	1136.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.892e+00;DB;DP=11;ExcessHet=6.9897;FS=6.215;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.27;ReadPosRankSum=-1.072e+00;SOR=0.061;VQSLOD=5.95;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,5:11:99:181,0,222
chr5	170345986	rs1862237	A	G	625.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.50;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.35;ReadPosRankSum=0.431;SOR=0.997;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:2,4:6:99:0|1:170345986_A_G:162,0,103:170345986
chr5	170346000	rs1862238	A	T	702.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.148e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.24;ReadPosRankSum=-1.440e-01;SOR=1.255;VQSLOD=23.68;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:1,5:6:62:0|1:170345986_A_G:203,0,62:170345986
chr5	170380523	rs930891	G	A	2755.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.125e+00;DB;DP=59;ExcessHet=6.9897;FS=4.366;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.51;ReadPosRankSum=-1.490e-01;SOR=0.442;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,28:59:99:632,0,859
chr5	170395512	rs2879366	A	T	1177.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.781;DB;DP=29;ExcessHet=6.9897;FS=3.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.55;ReadPosRankSum=0.105;SOR=1.082;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,9:29:99:211,0,713
chr5	170395820	rs11134672	G	A	1249.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.900;DB;DP=38;ExcessHet=6.9897;FS=0.868;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.16;ReadPosRankSum=-1.190e-01;SOR=0.543;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,11:38:99:279,0,775
chr5	170395885	rs2446049	T	C	1926.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.99;SOR=3.958;VQSLOD=21.02;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:678,51,0
chr5	170596701	rs10526761	TTAAA	T	745.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.030e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.63;ReadPosRankSum=-4.140e-01;SOR=0.593;VQSLOD=7.32;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:198,0,230
chr5	170610273	rs6555936	G	A	8121.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.700e-01;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.70;ReadPosRankSum=0.804;SOR=0.708;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,49:104:99:1164,0,1369
chr5	170640462	rs4868073	A	G	166	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.383e+00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.71;ReadPosRankSum=0.674;SOR=1.609;VQSLOD=23.70;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:112,9,0
chr5	170640827	rs4867648	C	A	2084.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.130e+00;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.36;ReadPosRankSum=0.493;SOR=0.941;VQSLOD=7.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,13:24:99:388,0,331
chr5	170669594	.	A	G	231.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.28;DP=21;ExcessHet=3.0103;FS=5.935;MQ=60.00;MQRankSum=0.00;QD=11.01;ReadPosRankSum=0.709;SOR=2.655;VQSLOD=17.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,7:21:99:240,0,382
chr5	170720755	rs2914330	T	A	3062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.66;SOR=3.126;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:884,72,0
chr5	170737025	rs2914335	T	G	4141.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.71;SOR=2.045;VQSLOD=20.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1238,105,0
chr5	170813951	rs28411383	C	CT	765.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.777;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=59.46;MQRankSum=-6.840e-01;POSITIVE_TRAIN_SITE;QD=25.53;ReadPosRankSum=0.498;SOR=0.836;VQSLOD=2.06;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,12:12:36:419,36,0
chr5	170814023	rs28411384	C	T	268.28	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.05;SOR=4.174;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:122,9,0
chr5	170815125	rs2071276	G	T	359.36	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.686;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=58.44;MQRankSum=1.10;POSITIVE_TRAIN_SITE;QD=17.97;ReadPosRankSum=0.342;SOR=0.666;VQSLOD=0.637;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:3:9:110,9,0
chr5	170818897	rs3830032	A	G	4312.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.32;DB;DP=69;ExcessHet=1.5490;FS=0.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.92;ReadPosRankSum=-2.890e-01;SOR=0.590;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,69:69:99:1|1:170818897_A_G:3135,214,0:170818897
chr5	170818906	rs3830033	T	A	4251.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.552e+00;DB;DP=71;ExcessHet=1.5490;FS=0.780;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.21;ReadPosRankSum=-3.540e-01;SOR=0.565;VQSLOD=22.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,71:71:99:1|1:170818897_A_G:3117,213,0:170818897
chr5	170818964	rs138910433	G	GGT	2683.95	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.617;DB;DP=46;ExcessHet=1.5490;FS=0.000;MQ=59.84;MQRankSum=0.00;QD=27.67;ReadPosRankSum=-4.930e-01;SOR=0.650;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,46:46:99:1|1:170818964_G_GGT:2059,141,0:170818964
chr5	170818969	rs3830034	A	G	2645.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.791;DB;DP=43;ExcessHet=1.5490;FS=0.000;MQ=59.83;MQRankSum=0.00;QD=28.45;ReadPosRankSum=-4.710e-01;SOR=0.665;VQSLOD=5.17;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,43:43:99:1|1:170818964_G_GGT:2035,138,0:170818964
chr5	170819122	rs12655243	A	T	333.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.674;DB;DP=6;ExcessHet=1.5490;FS=2.963;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.85;ReadPosRankSum=0.414;SOR=0.180;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:248,18,0
chr5	170819887	rs3830035	G	A	3705.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.21;DB;DP=86;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.92;ReadPosRankSum=-6.790e-01;SOR=0.681;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,86:86:99:2636,258,0
chr5	170820024	rs3830036	G	A	527.22	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.29;DB;DP=9;ExcessHet=1.5490;FS=4.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.11;ReadPosRankSum=-7.050e-01;SOR=2.964;VQSLOD=19.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:371,27,0
chr5	170827115	rs6555952	C	A	4886.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.181e+00;DB;DP=63;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.17;ReadPosRankSum=0.793;SOR=0.715;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,63:63:99:1|1:170827115_C_A:2829,195,0:170827115
chr5	170827118	rs6555953	A	G	4889.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.571e+00;DB;DP=64;ExcessHet=1.5490;FS=0.662;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=0.656;SOR=0.813;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,64:64:99:1|1:170827115_C_A:2829,195,0:170827115
chr5	170827311	rs139696681	T	TGGGAGATCATCTCATACTGA	118.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=33.51;SOR=2.833;VQSLOD=4.22;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,3:3:8:133,8,0
chr5	170828170	rs62383969	C	T	314.85	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.26;DB;DP=5;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.49;ReadPosRankSum=-2.310e-01;SOR=1.329;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:199,15,0
chr5	170832243	rs11134698	A	G	822.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.23;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.38;ReadPosRankSum=-1.008e+00;SOR=1.244;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,14:14:42:564,42,0
chr5	170832637	rs7711765	C	T	1083.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.45;DB;DP=16;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.85;ReadPosRankSum=1.37;SOR=3.193;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,16:16:48:652,48,0
chr5	170837222	rs60570384	C	CAG	209.63	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.31;SOR=3.611;VQSLOD=4.78;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,5:5:15:225,15,0
chr5	170847555	rs6555955	T	C	4370.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.51;SOR=5.353;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1217,105,0
chr5	170863509	rs4076077	C	T	2469.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.700e-01;DB;DP=27;ExcessHet=3.0103;FS=2.909;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.56;ReadPosRankSum=0.893;SOR=1.293;VQSLOD=23.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:879,81,0
chr5	170863653	rs4074237	A	T	150.39	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.51;SOR=3.258;VQSLOD=21.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr5	170876364	rs56932885	C	CGTGTGTGTGT	241.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=0;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.95;SOR=2.303;VQSLOD=4.39;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,0:0:1:42,1,0
chr5	171200997	rs26400	C	A	1245.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.487e+00;DB;DP=31;ExcessHet=1.5490;FS=1.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.48;ReadPosRankSum=0.059;SOR=1.005;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,15:31:99:353,0,440
chr5	171201499	rs12153230	G	C	5246.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.435;DB;DP=105;ExcessHet=1.5490;FS=1.152;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-4.060e-01;SOR=0.821;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,42:105:99:1101,0,1774
chr5	171213209	rs891915	A	G	305.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.68;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.30;ReadPosRankSum=-1.770e-01;SOR=0.404;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:137,0,206
chr5	171213245	rs697042	G	A	511.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.79;ReadPosRankSum=1.15;SOR=3.912;VQSLOD=15.53;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:109,0,28
chr5	171217371	rs11950253	G	A	6912.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.687e+00;DB;DP=121;ExcessHet=1.5490;FS=1.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.87;ReadPosRankSum=-5.390e-01;SOR=0.796;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,66:121:99:1746,0,1465
chr5	171218138	rs7718767	G	A	1679.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.270e-01;DB;DP=37;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.35;ReadPosRankSum=-1.680e-01;SOR=0.714;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:556,0,440
chr5	171218200	rs7718801	G	C	624.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.561;DB;DP=10;ExcessHet=1.5490;FS=5.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.04;ReadPosRankSum=-3.190e-01;SOR=2.303;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:83:83,0,191
chr5	171305356	.	T	A	33.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=6;ExcessHet=3.0103;FS=4.771;MQ=60.00;MQRankSum=0.00;QD=5.54;ReadPosRankSum=-8.420e-01;SOR=0.039;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:42:42,0,114
chr5	171472417	rs4867662	A	G	626.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.000e-02;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.62;ReadPosRankSum=1.18;SOR=0.892;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:163,0,103
chr5	171472575	rs4868136	G	A	3913.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=74;ExcessHet=3.9794;FS=3.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.17;ReadPosRankSum=1.27;SOR=0.549;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,50:74:99:1164,0,476
chr5	171480055	rs4569891	G	A	1743.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.153;DB;DP=66;ExcessHet=3.9794;FS=1.225;MQ=59.98;MQRankSum=0.971;POSITIVE_TRAIN_SITE;QD=10.56;ReadPosRankSum=-7.010e-01;SOR=0.842;VQSLOD=2.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,31:66:99:739,0,838
chr5	171481606	rs10155597	A	G	981.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.240e-01;DB;DP=81;ExcessHet=3.0103;FS=3.063;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.11;ReadPosRankSum=0.137;SOR=0.420;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,43:81:99:990,0,883
chr5	171484631	rs13157965	T	C	335.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.228e+00;DB;DP=20;ExcessHet=3.9794;FS=1.639;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.59;ReadPosRankSum=1.23;SOR=0.283;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,6:20:99:137,0,414
chr5	171517115	rs57843629	C	T	466.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.264e+00;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.65;ReadPosRankSum=1.39;SOR=0.693;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:130,0,174
chr5	171533629	rs2306963	A	G	7439.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.84;DB;DP=70;ExcessHet=3.0103;FS=2.456;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=-4.630e-01;SOR=0.505;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,23:70:99:668,0,1229
chr5	171533656	rs2306962	C	T	9627.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.73;DB;DP=104;ExcessHet=3.0103;FS=7.022;MQ=59.97;MQRankSum=0.673;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.67;ReadPosRankSum=0.100;SOR=1.165;VQSLOD=0.788;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:73,31:104:99:856,0,1899
chr5	171533782	rs2306961	T	C	2606.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.10;DB;DP=210;ExcessHet=3.0103;FS=3.905;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.41;ReadPosRankSum=-1.886e+00;SOR=0.666;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,99:210:99:2615,0,2820
chr5	171534682	rs3836825	T	TGCCCACAGGCTGACCGGGC	239.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=20;ExcessHet=3.0103;FS=2.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.96;ReadPosRankSum=-1.310e+00;SOR=1.483;VQSLOD=6.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,5:20:99:248,0,2852
chr5	171554473	rs2279514	G	A	7708.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.78;DB;DP=103;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.44;ReadPosRankSum=0.473;SOR=0.677;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,42:103:99:1175,0,1552
chr5	171554516	rs2029523	A	G	825.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.264e+00;DB;DP=51;ExcessHet=3.0103;FS=9.523;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.18;ReadPosRankSum=0.114;SOR=0.078;VQSLOD=20.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,28:51:99:834,0,757
chr5	171583610	rs41275267	A	G	756.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.09;DB;DP=64;ExcessHet=3.0103;FS=6.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.82;ReadPosRankSum=-9.280e-01;SOR=0.186;VQSLOD=22.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,28:64:99:765,0,1063
chr5	171583809	rs2306960	C	G	1159.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.628e+00;DB;DP=103;ExcessHet=3.0103;FS=0.752;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.25;ReadPosRankSum=1.40;SOR=0.570;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:56,47:103:99:1168,0,1582
chr5	171614784	rs74759636	C	G	720.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.79;DB;DP=44;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.37;ReadPosRankSum=0.165;SOR=0.534;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,20:44:99:729,0,856
chr5	171621408	rs35441810	A	ATT	191.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.753;DB;DP=11;ExcessHet=3.0103;FS=2.764;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.38;ReadPosRankSum=-8.670e-01;SOR=1.508;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,6:11:99:0|1:171621408_A_ATT:172,0,435:171621408
chr5	171621430	rs6862632	A	G	54.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.111e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=9.04;ReadPosRankSum=0.00;SOR=0.307;VQSLOD=21.41;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,2:6:63:0|1:171621408_A_ATT:63,0,414:171621408
chr5	171627391	rs10070923	T	C	2188.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.394e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.99;MQRankSum=-7.770e-01;POSITIVE_TRAIN_SITE;QD=29.58;ReadPosRankSum=-4.550e-01;SOR=0.660;VQSLOD=2.12;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,16:16:48:558,48,0
chr5	171627701	rs17074425	G	A	1127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.25;DB;DP=86;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.11;ReadPosRankSum=-1.640e-01;SOR=0.631;VQSLOD=23.28;culprit=MQ	GT:AD:DP:GQ:PL	0/1:44,42:86:99:1136,0,1129
chr5	171627773	rs2306959	G	C	3140.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.69;DB;DP=24;ExcessHet=3.0103;FS=1.770;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.05;ReadPosRankSum=1.09;SOR=1.329;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:897,72,0
chr5	171630194	rs76175819	C	CTTT	312.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.85;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.35;ReadPosRankSum=1.19;SOR=0.733;VQSLOD=5.91;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,9:18:99:321,0,343
chr5	171630197	rs201583078	T	TTTTC	825.96	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.293;DB;DP=20;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.21;ReadPosRankSum=-7.190e-01;SOR=0.693;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,10:20:99:339,0,334
chr5	171630202	rs199722799	CCCA	C	322.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.466;DB;DP=21;ExcessHet=3.0103;FS=1.971;MQ=60.00;MQRankSum=0.00;QD=15.35;ReadPosRankSum=0.643;SOR=0.307;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:11,10:21:99:331,0,377
chr5	171630204	rs372914830	CACCCT	C,*	1083.83	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=1.12;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.68;ReadPosRankSum=0.132;SOR=0.700;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,10,10:20:99:902,386,331,428,0,377
chr5	171760544	rs35951290	TA	T	883.14	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=19;ExcessHet=0.4576;FS=11.047;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.45;ReadPosRankSum=1.23;SOR=3.172;VQSLOD=2.89;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,19:19:60:1|1:171760544_TA_T:900,60,0:171760544
chr5	171760546	rs3204110	A	T	993.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=20;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=35.70;SOR=4.615;VQSLOD=19.73;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,20:20:69:1|1:171760544_TA_T:1010,69,0:171760544
chr5	171760569	rs12033	A	G	1393.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.23;SOR=3.383;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,36:36:99:1|1:171760544_TA_T:1410,108,0:171760544
chr5	171773467	rs116315878	T	A	249.58	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=-6.310e-01;SOR=1.022;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:258,0,165
chr5	171785892	rs2569232	A	G	2521.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.550e-01;DB;DP=63;ExcessHet=3.9794;FS=4.234;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.78;ReadPosRankSum=1.85;SOR=0.466;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,21:63:99:436,0,1104
chr5	171800584	rs10625047	G	GCATC	355.92	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.44;DB;DP=2;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.42;ReadPosRankSum=1.44;SOR=0.473;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:2:9:135,9,0
chr5	171809252	rs114274833	G	A	279.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.51;ReadPosRankSum=0.00;SOR=1.445;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:288,0,356
chr5	171821396	rs111288764	ATAAC	A	144.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.010e-01;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.700;SOR=0.527;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:153,0,286
chr5	171821671	rs13356223	T	C	716.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=52;ExcessHet=3.0103;FS=1.143;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=1.65;SOR=0.463;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,28:52:99:725,0,636
chr5	171849289	rs6873315	A	G	1158.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039e+00;DB;DP=30;ExcessHet=6.9897;FS=5.434;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.45;ReadPosRankSum=-5.550e-01;SOR=0.270;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,17:30:99:452,0,365
chr5	171849653	rs28414603	A	C	431.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=7;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=-3.280e-01;SOR=0.507;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:58:197,0,58
chr5	171881006	rs2569212	A	G	249.46	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.82;ReadPosRankSum=1.98;SOR=1.828;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:68:68,0,153
chr5	171881423	rs139600850	G	A	2152.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.14;DB;DP=86;ExcessHet=3.9794;FS=14.088;MQ=60.00;MQRankSum=0.00;QD=11.04;ReadPosRankSum=0.228;SOR=0.189;VQSLOD=13.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,41:86:99:1048,0,1405
chr5	171881523	rs112436148	G	C	357.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.30;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.23;ReadPosRankSum=1.26;SOR=0.540;VQSLOD=21.50;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:225,0,210
chr5	172185312	rs322364	G	A	5529.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.451e+00;DB;DP=100;ExcessHet=3.9794;FS=5.270;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.20;ReadPosRankSum=2.09;SOR=0.446;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,100:100:99:2943,298,0
chr5	172185854	rs322363	T	C	552.84	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.36;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.28;ReadPosRankSum=1.92;SOR=1.270;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:219,18,0
chr5	172189304	rs322356	G	C	8202.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.606;DB;DP=177;ExcessHet=1.5490;FS=0.502;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=1.81;SOR=0.648;VQSLOD=22.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5562,530,0
chr5	172196711	rs2431663	G	T	15582.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.04;SOR=1.064;VQSLOD=20.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:4715,476,0
chr5	172197581	rs34507926	G	C	1370.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.987e+00;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=1.83;SOR=0.621;VQSLOD=22.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,53:101:99:1379,0,1422
chr5	172197776	rs201026723	C	G	2637.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.662e+00;DB;DP=222;ExcessHet=3.0103;FS=1.665;MQ=60.00;MQRankSum=0.00;QD=11.88;ReadPosRankSum=-6.920e-01;SOR=0.848;VQSLOD=21.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:116,106:222:99:2646,0,3086
chr5	172261583	rs111773832	G	GC	1900.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.970e-01;DB;DP=31;ExcessHet=3.9794;FS=8.183;MQ=59.92;MQRankSum=0.00;QD=18.46;ReadPosRankSum=-3.110e-01;SOR=2.478;VQSLOD=3.68;culprit=FS	GT:AD:DP:GQ:PL	0/1:7,24:31:70:587,0,70
chr5	172261593	rs63376061	T	C	2740.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=4.782;MQ=60.00;NEGATIVE_TRAIN_SITE;QD=26.10;SOR=0.143;VQSLOD=-1.412e-01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1327,96,0
chr5	172293965	rs4868226	A	C	3328.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.330e-01;DB;DP=47;ExcessHet=3.9794;FS=5.145;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.34;ReadPosRankSum=2.70;SOR=1.427;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1643,140,0
chr5	172294194	rs793027	G	T	13909.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.89;DB;DP=177;ExcessHet=3.0103;FS=2.516;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.29;ReadPosRankSum=-2.150e-01;SOR=0.522;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,176:177:99:5500,519,0
chr5	172294916	rs793026	G	A	3249.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.54;DB;DP=32;ExcessHet=3.0103;FS=6.807;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.86;ReadPosRankSum=-5.780e-01;SOR=2.312;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:95:1082,95,0
chr5	172295010	rs793025	G	C	976.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.66;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.68;ReadPosRankSum=0.700;SOR=2.910;VQSLOD=20.38;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:270,21,0
chr5	172315872	rs4868227	G	A	3109.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.960e-01;DB;DP=63;ExcessHet=6.9897;FS=8.044;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.87;ReadPosRankSum=0.657;SOR=1.556;VQSLOD=20.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:34,29:63:99:967,0,1054
chr5	172324128	rs13154777	A	T	1920.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.576;DB;DP=47;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.303;SOR=0.668;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,19:47:99:471,0,720
chr5	172324267	rs114161208	A	G	178.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.431;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.71;ReadPosRankSum=-6.740e-01;SOR=0.941;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,5:6:23:187,0,23
chr5	172332558	rs7721348	G	A	361.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.47;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.08;ReadPosRankSum=1.72;SOR=1.473;VQSLOD=22.91;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:21:228,0,21
chr5	172336616	rs2302957	C	T	15085.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.348e+00;DB;DP=212;ExcessHet=3.0103;FS=2.309;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.17;ReadPosRankSum=-1.956e+00;SOR=0.956;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,212:212:99:6293,634,0
chr5	172341431	rs35202051	T	C	63.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.18;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:31:71,0,31
chr5	172341917	rs17716949	T	C	4078.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=194;ExcessHet=3.9794;FS=0.411;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.91;ReadPosRankSum=0.360;SOR=0.745;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:92,102:194:99:2626,0,2116
chr5	172342029	rs35941893	G	GT	2804.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=117;ExcessHet=3.9794;FS=1.757;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.445;SOR=0.557;VQSLOD=7.40;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:56,61:117:99:1631,0,1469
chr5	172347440	rs13187960	G	A	8147.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.478;DB;DP=241;ExcessHet=6.9897;FS=0.519;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=0.349;SOR=0.768;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:123,118:241:99:2684,0,2802
chr5	172347679	rs538622	A	G	967.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.07;DB;DP=18;ExcessHet=6.9897;FS=1.390;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.44;ReadPosRankSum=-9.400e-02;SOR=1.013;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,6:18:99:166,0,336
chr5	172350638	rs485710	A	G	110.31	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.06;ReadPosRankSum=1.04;SOR=1.022;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,3:5:71:117,0,71
chr5	172353343	rs11750403	A	G	918.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.08;DB;DP=10;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.42;ReadPosRankSum=-4.600e-01;SOR=0.829;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,8:10:51:328,0,51
chr5	172353763	rs7721475	T	C	515.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.803e+00;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.28;ReadPosRankSum=0.180;SOR=0.446;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:48:48,0,218
chr5	172381973	rs80167678	A	AGGT	6751.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.27;DB;DP=75;ExcessHet=3.9794;FS=1.521;MQ=59.99;MQRankSum=0.00;QD=25.58;ReadPosRankSum=-1.490e-01;SOR=0.823;VQSLOD=6.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:41,34:75:99:1304,0,2080
chr5	172385267	rs34217217	C	CA	492.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.730e-01;DB;DP=24;ExcessHet=6.9897;FS=2.063;MQ=59.90;MQRankSum=0.00;QD=7.46;ReadPosRankSum=0.00;SOR=0.995;VQSLOD=5.62;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:13,7:24:99:169,0,172
chr5	172395408	rs475936	T	A	6250.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.21;SOR=3.030;VQSLOD=20.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1980,168,0
chr5	172395664	rs11749686	T	C	14164.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=163;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.61;ReadPosRankSum=0.726;SOR=0.764;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,163:163:99:5059,488,0
chr5	172396394	rs505788	C	T	11857.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.96;SOR=1.077;VQSLOD=20.55;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3189,303,0
chr5	172421760	rs11296906	AT	A	3653.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=99;ExcessHet=6.9897;FS=0.906;MQ=60.00;MQRankSum=0.00;QD=12.26;ReadPosRankSum=-2.580e-01;SOR=0.771;VQSLOD=5.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,60:99:99:1323,0,549
chr5	172447762	rs17075508	G	A	3619.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=95;ExcessHet=6.9897;FS=0.956;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.92;ReadPosRankSum=-9.760e-01;SOR=0.790;VQSLOD=23.14;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,43:95:99:1234,0,1226
chr5	172461243	rs4868237	C	T	1108.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=17;ExcessHet=6.9897;FS=3.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.80;ReadPosRankSum=-2.700e-01;SOR=1.426;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,10:17:99:308,0,161
chr5	172494981	rs582067	C	T	238.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.006e+00;DB;DP=5;ExcessHet=3.9794;FS=0.000;MQ=58.59;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.84;ReadPosRankSum=1.28;SOR=1.609;VQSLOD=0.406;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:29:114,0,29
chr5	172512686	rs671387	C	T	1129.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.600e-02;DB;DP=54;ExcessHet=3.9794;FS=8.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-8.430e-01;SOR=1.596;VQSLOD=19.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,28:54:99:722,0,727
chr5	172539646	rs29779	G	A	276.40	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.13;ReadPosRankSum=0.319;SOR=1.802;VQSLOD=23.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:28:110,0,28
chr5	172561292	.	TAC	T,CAC	464.71	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.551;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.12;ReadPosRankSum=-2.690e-01;SOR=1.609;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,5,6:11:99:288,142,219,173,0,177
chr5	172571418	rs255306	T	G	624.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.10;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=59.97;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.13;ReadPosRankSum=1.27;SOR=0.892;VQSLOD=6.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:297,0,192
chr5	172573767	rs29798	T	C	1866.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=52;ExcessHet=3.9794;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.14;ReadPosRankSum=-1.900e-02;SOR=1.162;VQSLOD=23.41;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,31:52:99:832,0,505
chr5	172574176	rs29797	G	C	310.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=6;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.15;ReadPosRankSum=-7.030e-01;SOR=1.445;VQSLOD=22.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:64:120,0,64
chr5	172578549	rs374928255	AT	A	765.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.200e-02;DB;DP=55;ExcessHet=6.9897;FS=0.749;MQ=59.91;MQRankSum=0.00;QD=6.23;ReadPosRankSum=0.117;SOR=0.842;VQSLOD=5.61;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:35,14:55:99:164,0,713
chr5	172581527	rs10712809	CT	C	40.14	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.7918;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=20.07;SOR=2.303;VQSLOD=3.19;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,2:2:6:52,6,0
chr5	172585927	rs5745160	TC	T	2877.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.094e+00;DB;DP=73;ExcessHet=3.9794;FS=1.359;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=0.313;SOR=0.859;VQSLOD=7.52;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:31,42:73:99:1423,0,1032
chr5	172588027	rs255303	G	T	356.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.647e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.25;ReadPosRankSum=0.310;SOR=0.784;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:160,0,179
chr5	172659511	rs703752	C	A	2700.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.25;DB;DP=93;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.17;ReadPosRankSum=1.82;SOR=0.639;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,54:93:99:1461,0,1111
chr5	172660522	rs371347562	AT	A	305.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DB;DP=13;ExcessHet=3.9794;FS=1.338;MQ=59.57;MQRankSum=0.00;QD=6.23;ReadPosRankSum=0.260;SOR=0.404;VQSLOD=5.64;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,8:13:99:0|1:172660522_AT_A:221,0,272:172660522
chr5	172660525	.	AAT	A	212.49	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.349;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=17.71;SOR=0.896;VQSLOD=5.90;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:4,8:12:99:0|1:172660522_AT_A:221,0,272:172660522
chr5	172660894	rs3131915	C	G	167.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.20;DB;DP=6;ExcessHet=3.9794;FS=3.123;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=1.37;SOR=2.030;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:67:67,0,146
chr5	172745269	.	AAGAGAG	A,AAGAG	2270.15	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.542;DP=33;ExcessHet=3.0103;FS=2.243;MQ=59.95;MQRankSum=0.00;QD=25.51;ReadPosRankSum=0.533;SOR=1.098;VQSLOD=6.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:0,14,17:33:99:1091,519,687,606,0,552
chr5	172774263	rs33936176	CT	C	744.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.270e-01;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.57;ReadPosRankSum=-1.159e+00;SOR=2.235;VQSLOD=6.63;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,7:7:21:222,21,0
chr5	172774300	rs4868258	A	G	991.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=4.06;DB;DP=15;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=26.10;ReadPosRankSum=-1.002e+00;SOR=1.179;VQSLOD=21.76;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:48:1|1:172774300_A_G:720,48,0:172774300
chr5	172774306	rs141147397	A	AT	2571.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.272;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.40;ReadPosRankSum=0.586;SOR=2.395;VQSLOD=5.29;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:51:1|1:172774300_A_G:765,51,0:172774300
chr5	172774307	rs55834285	A	T	2568.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.336e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=33.36;ReadPosRankSum=0.673;SOR=2.395;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:51:1|1:172774300_A_G:765,51,0:172774300
chr5	172774315	rs55869587	T	TGG	3372.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.72;DB;DP=17;ExcessHet=3.0103;FS=8.360;MQ=60.00;MQRankSum=0.00;QD=28.54;ReadPosRankSum=0.966;SOR=3.217;VQSLOD=3.03;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,17:17:60:1|1:172774300_A_G:900,60,0:172774300
chr5	172774316	rs55643913	T	TCGCTAATCTC	3470.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.967e+00;DB;DP=18;ExcessHet=3.0103;FS=8.646;MQ=60.00;MQRankSum=0.00;QD=26.56;ReadPosRankSum=0.668;SOR=3.308;VQSLOD=2.83;culprit=FS	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,18:18:69:1|1:172774300_A_G:1008,69,0:172774300
chr5	172774325	rs4868259	T	C	3825.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.42;DB;DP=29;ExcessHet=3.0103;FS=12.386;MQ=60.00;MQRankSum=0.00;QD=33.27;ReadPosRankSum=0.575;SOR=2.921;VQSLOD=11.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,29:29:87:1|1:172774300_A_G:1251,87,0:172774300
chr5	172774396	rs4868260	G	A	7713.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.060e-01;DB;DP=98;ExcessHet=3.0103;FS=0.510;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=-1.084e+00;SOR=0.750;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3101,294,0
chr5	172774409	rs4868261	C	T	8153.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.00;DB;DP=115;ExcessHet=3.0103;FS=4.219;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.98;ReadPosRankSum=-4.300e-01;SOR=0.962;VQSLOD=23.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3377,342,0
chr5	172774424	rs4868262	T	C	8973.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.060;DB;DP=125;ExcessHet=3.0103;FS=1.438;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.89;ReadPosRankSum=-4.780e-01;SOR=0.795;VQSLOD=22.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3867,374,0
chr5	172774626	rs6871935	C	T	2655.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.438e+00;DB;DP=23;ExcessHet=3.0103;FS=2.504;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.39;ReadPosRankSum=-1.190e-01;SOR=1.739;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:940,69,0
chr5	173035493	rs258860	A	G	2440.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.940e-01;DB;DP=29;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.06;ReadPosRankSum=0.607;SOR=0.999;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,18:29:99:464,0,288
chr5	173380347	rs12153678	G	A	563.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.51;DB;DP=38;ExcessHet=3.0103;FS=4.496;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.82;ReadPosRankSum=0.646;SOR=1.883;VQSLOD=21.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,17:38:99:572,0,623
chr5	173416191	rs72814721	C	T	1243.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=1.923;VQSLOD=21.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1260,116,0
chr5	173416365	rs61730190	C	A	4787.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.13;SOR=0.945;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:4804,446,0
chr5	173493014	rs75577256	G	A	429.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.98;DB;DP=25;ExcessHet=3.9794;FS=1.906;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.47;ReadPosRankSum=1.03;SOR=1.140;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,6:25:99:162,0,541
chr5	173527846	rs6881757	T	C	6507.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=92;ExcessHet=3.9794;FS=0.443;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.15;ReadPosRankSum=0.594;SOR=0.651;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,45:92:99:1175,0,1114
chr5	173528114	rs80165226	C	T	231.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.85;ReadPosRankSum=1.25;SOR=0.512;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:240,0,322
chr5	173534877	rs4457100	A	G	1882.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.429e+00;DB;DP=26;ExcessHet=3.9794;FS=1.308;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.92;ReadPosRankSum=1.29;SOR=0.415;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,14:26:99:433,0,416
chr5	173989035	rs4642387	C	T	867.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=36;ExcessHet=3.9794;FS=5.246;MQ=59.56;MQRankSum=0.00;QD=12.04;ReadPosRankSum=0.206;SOR=1.449;VQSLOD=2.03;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,15:36:99:390,0,496
chr5	174152100	rs2048152	G	A	6143.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.422e+00;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.86;ReadPosRankSum=0.260;SOR=0.681;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3404,347,0
chr5	174155970	rs138507863	ATGTG	A	1638.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.366;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.26;ReadPosRankSum=0.015;SOR=1.473;VQSLOD=7.36;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:48:1|1:174155970_ATGTG_A:720,48,0:174155970
chr5	174155998	rs4867776	G	A	2062.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.180e+00;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.41;ReadPosRankSum=-7.320e-01;SOR=0.743;VQSLOD=7.18;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,21:21:63:1|1:174155970_ATGTG_A:891,63,0:174155970
chr5	174156168	rs4242182	T	C	9593.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.200e-01;DB;DP=133;ExcessHet=3.0103;FS=1.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.14;ReadPosRankSum=-1.476e+00;SOR=0.612;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,133:133:99:4152,398,0
chr5	174178774	rs7709117	G	A	8902.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=164;ExcessHet=3.9794;FS=1.210;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.91;ReadPosRankSum=-5.880e-01;SOR=0.807;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,80:164:99:2123,0,2148
chr5	174178994	rs7709450	G	A	914.50	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.63;SOR=6.273;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:319,24,0
chr5	174868700	rs686	G	A	4437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.953e+00;DB;DP=104;ExcessHet=6.9897;FS=3.614;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=-5.020e-01;SOR=0.518;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,64:104:99:1625,0,1047
chr5	174868840	rs155417	T	C	15235.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=140;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=0.710;VQSLOD=20.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,140:140:99:4380,420,0
chr5	174870150	rs4532	C	T	4795.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.839e+00;DB;DP=69;ExcessHet=3.9794;FS=13.095;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.32;ReadPosRankSum=-6.700e-02;SOR=0.226;VQSLOD=15.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:40,29:69:99:769,0,1266
chr5	174919391	rs11318563	CA	C	77.50	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.740e-01;DB;DP=4;ExcessHet=1.5490;FS=0.000;MQ=58.34;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.37;ReadPosRankSum=0.674;SOR=1.329;VQSLOD=7.39;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,3:4:2:69,2,0
chr5	174935860	rs2652189	T	G	196.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.588e+00;DB;DP=14;ExcessHet=3.0103;FS=3.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.02;ReadPosRankSum=-5.640e-01;SOR=0.105;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:205,0,216
chr5	174935916	rs2662168	A	G	411.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.69;ReadPosRankSum=1.66;SOR=0.892;VQSLOD=22.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:13,15:28:99:420,0,355
chr5	174937193	rs2662170	C	T	1480.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.141;DB;DP=155;ExcessHet=3.0103;FS=2.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.55;ReadPosRankSum=-1.082e+00;SOR=0.757;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,68:155:99:1489,0,2048
chr5	174939214	rs925197	C	T	1360.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.876e+00;DB;DP=125;ExcessHet=3.0103;FS=3.233;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.88;ReadPosRankSum=-2.150e-01;SOR=0.464;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,60:125:99:1369,0,1696
chr5	174939427	rs2662172	G	A	144.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.398;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.03;ReadPosRankSum=0.00;SOR=0.223;VQSLOD=22.90;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:153,0,142
chr5	174940236	rs2644669	A	G	93.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.39;ReadPosRankSum=-1.150e+00;SOR=1.609;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:102,0,29
chr5	174940299	.	TAAA	T	265.65	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DP=5;ExcessHet=3.9794;FS=0.000;MQ=59.34;MQRankSum=0.00;QD=14.76;ReadPosRankSum=-4.370e-01;SOR=0.941;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,4:5:3:112,0,3
chr5	174949206	rs157475	T	C	212.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=4;ExcessHet=3.9794;FS=7.404;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.68;ReadPosRankSum=1.10;SOR=0.020;VQSLOD=21.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:69:73,0,69
chr5	174949652	rs35822721	C	CT	519.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.715;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.42;ReadPosRankSum=2.21;SOR=0.826;VQSLOD=6.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:9,3:12:65:65,0,274
chr5	174953743	rs198039	G	A	659.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=63;ExcessHet=3.0103;FS=7.418;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.46;ReadPosRankSum=1.24;SOR=1.697;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,25:63:99:668,0,955
chr5	175305591	rs3892909	C	T	2083.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.730e+00;DB;DP=33;ExcessHet=6.9897;FS=2.162;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.86;ReadPosRankSum=-7.480e-01;SOR=0.517;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,24:33:99:650,0,213
chr5	175306331	rs4077871	T	C	343.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=5;ExcessHet=3.9794;FS=6.421;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.43;ReadPosRankSum=1.28;SOR=0.056;VQSLOD=21.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,4:5:19:155,0,19
chr5	175307256	rs3822674	T	C	1660.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.31;DB;DP=50;ExcessHet=3.9794;FS=0.685;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-6.340e-01;SOR=0.620;VQSLOD=23.20;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,20:50:99:560,0,759
chr5	175307373	rs11747985	G	A	545.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.684;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.81;ReadPosRankSum=2.37;SOR=1.136;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:99:100,0,176
chr5	175511992	rs62389230	C	T	6796.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.510e-01;DB;DP=146;ExcessHet=6.9897;FS=0.000;MQ=55.90;MQRankSum=-9.670e-01;NEGATIVE_TRAIN_SITE;QD=14.16;ReadPosRankSum=0.082;SOR=0.681;VQSLOD=-2.760e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:69,77:146:99:1982,0,1669
chr5	175512211	rs12520581	C	T	4116.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.99;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=48.81;MQRankSum=-2.542e+00;QD=29.20;ReadPosRankSum=1.75;SOR=1.103;VQSLOD=-2.994e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,20:37:99:660,0,440
chr5	175528527	rs116633144	A	T	3895.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.47;DB;DP=68;ExcessHet=3.9794;FS=0.000;MQ=44.87;MQRankSum=-5.305e+00;QD=15.97;ReadPosRankSum=4.000e-03;SOR=0.663;VQSLOD=-4.141e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,13:68:99:245,0,1501
chr5	175665427	rs70991519	G	GC	3711.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=37.31;QD=33.44;SOR=4.902;VQSLOD=4.30;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1375,126,0
chr5	175717216	rs72645798	C	T	20635.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.28;DB;DP=890;ExcessHet=3.9794;FS=0.519;MQ=59.98;MQRankSum=0.493;POSITIVE_TRAIN_SITE;QD=11.83;ReadPosRankSum=2.13;SOR=0.744;VQSLOD=1.83;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:468,422:890:99:9944,0,11211
chr5	175721896	rs72645800	A	T	169.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.15;ReadPosRankSum=1.15;SOR=1.179;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:29:110,0,29
chr5	175721962	rs113772037	C	T	325.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.79;DB;DP=14;ExcessHet=3.9794;FS=0.000;MQ=57.67;MQRankSum=0.00;QD=17.11;ReadPosRankSum=0.674;SOR=0.602;VQSLOD=-1.083e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,7:14:99:253,0,247
chr5	175721967	.	CA	C	205.68	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DP=15;ExcessHet=6.9897;FS=6.927;MQ=58.02;MQRankSum=0.00;QD=5.71;ReadPosRankSum=0.00;SOR=2.472;VQSLOD=3.37;culprit=FS	GT:AD:DP:GQ:PL	0/1:6,7:15:66:118,0,66
chr5	175763596	rs67874748	G	A	542.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.217e+00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.69;ReadPosRankSum=-3.130e-01;SOR=0.495;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:99:263,0,100
chr5	175772015	rs417852	C	G	604.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.27;ReadPosRankSum=-7.030e-01;SOR=1.220;VQSLOD=23.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,5:8:96:193,0,96
chr5	175772208	rs17622467	C	T	1551.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.860e-01;DB;DP=128;ExcessHet=3.0103;FS=3.211;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.12;ReadPosRankSum=-1.810e-01;SOR=0.461;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,66:128:99:1560,0,1463
chr5	175774865	rs2241577	G	T	1870.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.790;DB;DP=61;ExcessHet=3.9794;FS=0.616;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.81;ReadPosRankSum=0.705;SOR=0.801;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,37:61:99:922,0,533
chr5	175786437	rs367722585	CATT	C	399.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.12;DB;DP=29;ExcessHet=3.0103;FS=2.062;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=0.800;SOR=1.473;VQSLOD=7.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:18,11:29:99:408,0,935
chr5	175792605	rs2303667	G	C	3324.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.080e-01;DB;DP=109;ExcessHet=6.9897;FS=1.946;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.73;ReadPosRankSum=0.284;SOR=0.828;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,48:109:99:1061,0,1467
chr5	175793532	rs2303666	C	T	1280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.820e-01;DB;DP=121;ExcessHet=3.0103;FS=0.686;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.58;ReadPosRankSum=-2.470e-01;SOR=0.572;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:64,57:121:99:1289,0,1564
chr5	175793717	rs3815898	C	T	3874.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.71;DB;DP=46;ExcessHet=3.0103;FS=2.246;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=-1.554e+00;SOR=0.443;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,46:46:99:1651,138,0
chr5	175795666	rs13170785	G	A	39.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=19.59;SOR=0.693;VQSLOD=16.41;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	175811094	rs56989856	C	CGT	13072.05	PASS	AC=2;AF=1.00;AN=2;DB;DP=110;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=24.35;SOR=1.092;VQSLOD=2.77;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,110:110:99:4485,337,0
chr5	175813564	rs17078187	A	T	1522.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=13;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.73;ReadPosRankSum=0.845;SOR=0.654;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,10:13:52:350,0,52
chr5	175819621	rs5866	T	C	1012.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.242e+00;DB;DP=8;ExcessHet=3.9794;FS=3.659;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.65;ReadPosRankSum=-7.920e-01;SOR=2.448;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:57:212,0,57
chr5	175825311	rs11956701	A	G	906.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.88;ReadPosRankSum=1.96;SOR=1.473;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:99:107,0,100
chr5	175843461	rs33956988	CG	C	10615.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=104;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.56;SOR=5.816;VQSLOD=6.69;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,104:104:99:3383,313,0
chr5	175913674	rs5873535	AT	A	2142.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.972;DB;DP=36;ExcessHet=3.0103;FS=2.399;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.43;ReadPosRankSum=-1.220e+00;SOR=1.111;VQSLOD=7.14;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:21,15:36:99:323,0,488
chr5	175915835	rs2963667	C	T	5189.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.71;SOR=1.739;VQSLOD=21.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,57:57:99:1731,170,0
chr5	175923354	rs2963669	G	A	1035.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.42;ReadPosRankSum=1.61;SOR=1.075;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,3:8:98:98,0,153
chr5	175923431	rs2963670	G	A	1485.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.41;DB;DP=25;ExcessHet=1.5490;FS=7.003;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.14;ReadPosRankSum=-1.100e-01;SOR=2.786;VQSLOD=18.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,14:25:99:462,0,243
chr5	175933691	rs10563462	TGTGTGTGC	T	1169.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.618;DB;DP=18;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.41;ReadPosRankSum=-1.060e-01;SOR=1.022;VQSLOD=7.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,12:18:99:474,0,468
chr5	175956177	rs2241584	G	A	3918.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.679e+00;DB;DP=313;ExcessHet=3.0103;FS=2.422;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.52;ReadPosRankSum=-6.360e-01;SOR=0.806;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:145,168:313:99:3927,0,3493
chr5	175956271	rs890835	A	C	13716.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=185;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.50;SOR=1.405;VQSLOD=19.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,185:185:99:6057,555,0
chr5	175956516	rs2241585	G	A	4959.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.07;DB;DP=122;ExcessHet=1.5490;FS=2.528;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.24;ReadPosRankSum=-6.260e-01;SOR=0.508;VQSLOD=23.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,54:122:99:1407,0,1689
chr5	175992074	rs6892394	A	G	829.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.744e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.63;ReadPosRankSum=0.00;SOR=0.793;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:192,15,0
chr5	175992258	rs6556275	A	G	9760.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.210e-01;DB;DP=97;ExcessHet=3.0103;FS=2.026;MQ=60.00;MQRankSum=0.00;QD=34.25;ReadPosRankSum=0.052;SOR=0.878;VQSLOD=21.06;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,97:97:99:1|1:175992258_A_G:4399,301,0:175992258
chr5	175992266	rs11749894	C	G	8735.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.93;SOR=1.231;VQSLOD=19.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,106:106:99:1|1:175992258_A_G:4609,319,0:175992258
chr5	175994173	rs11392917	C	CT	1627.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=35;ExcessHet=3.9794;FS=1.226;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.31;ReadPosRankSum=-5.450e-01;SOR=0.975;VQSLOD=7.41;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,29:35:22:543,0,22
chr5	175995571	rs12716317	C	G	2091.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.325;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.28;ReadPosRankSum=0.800;SOR=3.538;VQSLOD=17.16;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:926,66,0
chr5	175995935	rs10056130	C	T	20748.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=298;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.34;SOR=0.898;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,298:298:99:9239,893,0
chr5	176001975	rs1078450	T	C	2182.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.62;SOR=6.518;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:601,45,0
chr5	176002144	rs4242200	A	C	14194.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=159;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.41;SOR=1.245;VQSLOD=20.90;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,159:159:99:5167,477,0
chr5	176002873	rs3762969	C	T	10679.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=97;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.90;SOR=0.988;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,97:97:99:3237,291,0
chr5	176002926	rs3762968	C	A	12714.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=128;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=33.82;SOR=1.107;VQSLOD=4.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,128:128:99:4162,384,0
chr5	176004212	rs11959522	A	C	742.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.59;SOR=4.514;VQSLOD=21.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:164,15,0
chr5	176004312	rs11749537	A	G	3518.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=35;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.04;SOR=4.892;VQSLOD=22.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,35:35:99:1228,105,0
chr5	176004476	rs11134982	T	C	12716.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.28;SOR=0.856;VQSLOD=20.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4045,396,0
chr5	176004846	rs1565149	C	T	12676.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=116;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.71;SOR=1.122;VQSLOD=20.86;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3902,348,0
chr5	176004866	rs35146200	A	AGT	11128.73	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.225e+00;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.87;ReadPosRankSum=-3.080e-01;SOR=0.990;VQSLOD=7.42;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3674,295,0
chr5	176005175	rs1565150	A	C	7429.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=72;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.86;SOR=1.199;VQSLOD=20.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,72:72:99:1|1:176005175_A_C:3215,220,0:176005175
chr5	176005184	rs1565151	G	A	7312.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=67;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.15;SOR=1.200;VQSLOD=21.28;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,67:67:99:1|1:176005175_A_C:3039,205,0:176005175
chr5	176005477	rs2358747	C	T	8941.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.94;SOR=0.707;VQSLOD=19.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:4099,373,0
chr5	176008238	rs4867840	G	T	3762.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=29.35;SOR=4.680;VQSLOD=5.96;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1360,110,0
chr5	176008539	rs72809131	G	A	2305.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723e+00;DB;DP=165;ExcessHet=3.0103;FS=5.014;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.97;ReadPosRankSum=0.124;SOR=0.398;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,88:165:99:2314,0,2135
chr5	176011264	rs752139	T	C	8448.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=114;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.00;SOR=1.041;VQSLOD=19.94;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3559,342,0
chr5	176012067	rs11745507	C	T	2462.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.75;SOR=3.258;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1185,108,0
chr5	176012800	rs3749627	C	T	856.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.28;SOR=6.518;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:38:430,38,0
chr5	176014175	rs7716925	A	G	226.76	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=3.912;VQSLOD=21.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:120,9,0
chr5	176015815	rs4868661	G	A	750.91	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.59;SOR=3.816;VQSLOD=21.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:363,30,0
chr5	176016822	rs11134983	T	C	1535.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.25;SOR=1.802;VQSLOD=21.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:546,39,0
chr5	176017455	rs2291442	C	T	6300.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=80;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.43;SOR=1.088;VQSLOD=21.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,80:80:99:2753,240,0
chr5	176018090	rs3792728	C	T	1133.92	PASS	AC=2;AF=1.00;AN=2;DB;DP=13;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.24;SOR=6.666;VQSLOD=23.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,13:13:39:539,39,0
chr5	176018545	rs11134984	G	A	5153.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.76;DB;DP=49;ExcessHet=3.0103;FS=3.138;MQ=60.00;MQRankSum=0.00;QD=33.91;ReadPosRankSum=1.74;SOR=2.108;VQSLOD=20.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,47:49:98:1631,98,0
chr5	176019508	rs72809142	T	C	1330.03	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.98;SOR=4.615;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,15:15:45:1|1:176019508_T_C:675,45,0:176019508
chr5	176019518	rs145575094	A	AGTG	1621.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=23.69;SOR=4.235;VQSLOD=4.11;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,16:16:54:1|1:176019508_T_C:767,54,0:176019508
chr5	176024880	rs4868663	C	T	10182.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=87;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=22.91;SOR=1.368;VQSLOD=2.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,87:87:99:3182,261,0
chr5	176025938	rs6556276	T	C	12796.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=125;ExcessHet=3.0103;FS=0.000;MQ=59.96;POSITIVE_TRAIN_SITE;QD=31.14;SOR=0.698;VQSLOD=4.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,125:125:99:3800,374,0
chr5	176026121	.	TCAAAGACCCAGGA	T	7648.92	PASS	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=31.68;SOR=1.219;VQSLOD=4.57;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,69:69:99:1|1:176026121_TCAAAGACCCAGGA_T:3096,210,0:176026121
chr5	176026135	.	TCCTCCTTCCTC	T	7638.92	PASS	AC=2;AF=1.00;AN=2;DP=69;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=24.56;SOR=1.233;VQSLOD=3.46;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,69:69:99:1|1:176026121_TCAAAGACCCAGGA_T:3092,208,0:176026121
chr5	176053336	rs71960846	GGT	G	2272.96	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=2.049;VQSLOD=5.90;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,28:32:90:963,90,0
chr5	176056529	rs4868669	A	G	13068.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.97;SOR=0.740;VQSLOD=20.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4011,400,0
chr5	176056806	rs6879864	C	T	579.89	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.53;SOR=5.549;VQSLOD=21.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:207,15,0
chr5	176069831	rs901740	G	A	3709.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=59.89;POSITIVE_TRAIN_SITE;QD=31.44;SOR=2.833;VQSLOD=4.96;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,30:30:88:883,88,0
chr5	176070004	rs13176195	G	A	701.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.87;SOR=1.931;VQSLOD=21.20;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:718,66,0
chr5	176070957	rs879653	T	C	704.74	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.40;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.03;ReadPosRankSum=-1.350e-01;SOR=2.303;VQSLOD=22.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:260,18,0
chr5	176071205	rs35148874	AG	A	283.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.26;SOR=4.407;VQSLOD=6.66;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,8:8:24:300,24,0
chr5	176079574	rs11739733	G	A	452.44	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.645e+00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.16;ReadPosRankSum=0.253;SOR=1.739;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:168,15,0
chr5	176081856	rs13183320	A	G	21252.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.362;DB;DP=264;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.73;ReadPosRankSum=0.094;SOR=0.755;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,264:264:99:8707,790,0
chr5	176082911	rs200741950	AC	A	31.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=58.12;MQRankSum=0.951;QD=1.95;ReadPosRankSum=1.88;SOR=0.527;VQSLOD=-5.350e-02;culprit=QD	GT:AD:DP:GQ:PL	0/1:12,4:16:40:40,0,276
chr5	176082912	rs6897431	C	A,*	1563.37	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=59.32;POSITIVE_TRAIN_SITE;QD=33.26;SOR=5.464;VQSLOD=6.06;culprit=MQ	GT:AD:DP:GQ:PL	1/2:0,12,4:16:40:652,92,40,327,0,276
chr5	176083175	rs6878977	T	G	7683.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.02;SOR=1.272;VQSLOD=20.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2520,237,0
chr5	176083997	rs4868677	G	A	25804.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=263;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.51;SOR=1.761;VQSLOD=20.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,263:263:99:8103,787,0
chr5	176084160	rs4868678	A	G	3250.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.37;SOR=8.838;VQSLOD=25.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,22:22:66:847,66,0
chr5	176084894	rs748742	C	T	568.52	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.12;SOR=3.126;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:83,6,0
chr5	176238031	rs2917637	G	A	846.33	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.93;SOR=3.160;VQSLOD=21.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:176238031_G_A:270,18,0:176238031
chr5	176238041	rs11135001	C	G	612.64	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=24.38;SOR=3.767;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:176238031_G_A:270,18,0:176238031
chr5	176304399	rs2304517	A	G	9506.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=5.34;DB;DP=101;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.37;ReadPosRankSum=1.12;SOR=0.731;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,101:101:99:3817,304,0
chr5	176305466	rs2304516	T	A	21370.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.28;DB;DP=388;ExcessHet=3.9794;FS=0.000;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=1.20;SOR=0.703;VQSLOD=6.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,387:388:99:11735,1146,0
chr5	176305678	rs478253	C	T	2105.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.655e+00;DB;DP=62;ExcessHet=3.9794;FS=3.470;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.07;ReadPosRankSum=1.15;SOR=1.203;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,33:62:99:1154,0,893
chr5	176306676	rs2292257	G	A	4103.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.24;DB;DP=59;ExcessHet=3.9794;FS=1.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.71;ReadPosRankSum=1.03;SOR=0.588;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:1937,177,0
chr5	176314373	rs143365599	G	A	1839.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.140e+00;DB;DP=121;ExcessHet=3.0103;FS=0.680;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.20;ReadPosRankSum=0.708;SOR=0.614;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,66:121:99:1848,0,1461
chr5	176314434	rs2278493	C	T	4866.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.076e+00;DB;DP=114;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.80;ReadPosRankSum=0.253;SOR=0.710;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,114:114:99:3681,338,0
chr5	176314459	rs2278492	G	A	5098.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.34;DB;DP=119;ExcessHet=1.5490;FS=1.122;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.17;ReadPosRankSum=-2.800e-01;SOR=0.603;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3946,354,0
chr5	176314639	rs6875296	G	A	13320.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.51;DB;DP=310;ExcessHet=1.5490;FS=2.138;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.62;ReadPosRankSum=0.729;SOR=0.897;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,310:310:99:9452,930,0
chr5	176314873	rs691693	C	T	2892.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.782e+00;DB;DP=43;ExcessHet=1.5490;FS=6.902;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.29;ReadPosRankSum=0.901;SOR=2.712;VQSLOD=18.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,43:43:99:1774,129,0
chr5	176315299	rs4976662	C	T	4308.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.17;DB;DP=88;ExcessHet=1.5490;FS=4.407;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.95;ReadPosRankSum=-1.570e-01;SOR=1.014;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:4,84:88:99:2760,165,0
chr5	176316201	rs691057	A	G	2140.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.021;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.48;ReadPosRankSum=-1.525e+00;SOR=1.207;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:790,63,0
chr5	176516537	rs3135918	C	G	898.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.170e+00;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.04;ReadPosRankSum=1.43;SOR=0.731;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:29,35:64:99:0|1:176516537_C_G:907,0,1061:176516537
chr5	176516540	rs3135919	C	T	772.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.210;DB;DP=67;ExcessHet=3.0103;FS=0.988;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.53;ReadPosRankSum=-5.600e-01;SOR=0.473;VQSLOD=22.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,28:67:99:1|0:176516537_C_G:781,0,1517:176516537
chr5	176516953	rs434434	A	G	9683.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=99;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.83;SOR=0.727;VQSLOD=20.68;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,99:99:99:3233,297,0
chr5	176517136	rs59390048	C	CGTGT	5602.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.37;DB;DP=45;ExcessHet=3.0103;FS=4.986;MQ=60.00;MQRankSum=0.00;QD=32.63;ReadPosRankSum=0.733;SOR=1.337;VQSLOD=5.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:17,23:45:99:910,0,733
chr5	176517170	rs387598	G	A	5850.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=54;ExcessHet=3.0103;FS=7.078;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=1.64;SOR=1.252;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:815,0,612
chr5	176517292	rs442856	A	G	12034.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.10;SOR=0.740;VQSLOD=20.42;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:3998,396,0
chr5	176517326	rs422421	T	C	12556.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=134;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.11;SOR=0.829;VQSLOD=20.50;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,134:134:99:4164,402,0
chr5	176517461	rs446382	T	G	6918.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.49;DB;DP=72;ExcessHet=3.0103;FS=1.420;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.95;ReadPosRankSum=-2.930e+00;SOR=0.551;VQSLOD=21.72;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:37,35:72:99:1060,0,1028
chr5	176517797	rs376618	C	T	25947.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.035e+00;DB;DP=379;ExcessHet=3.0103;FS=0.675;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.07;ReadPosRankSum=0.292;SOR=0.639;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:198,181:379:99:4396,0,5001
chr5	176518315	rs439213	A	C	1092.15	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.83;SOR=5.136;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:87,6,0
chr5	176518784	rs452885	C	T	9789.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.339e+00;DB;DP=152;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.20;ReadPosRankSum=-7.060e-01;SOR=0.642;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:73,79:152:99:1846,0,1878
chr5	176519287	rs393923	G	A	4543.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.90;SOR=3.541;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1150,102,0
chr5	176523562	rs31777	C	A	15500.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=200;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.45;SOR=0.981;VQSLOD=18.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,200:200:99:5915,599,0
chr5	176523597	rs31776	A	G	13467.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.14;DB;DP=209;ExcessHet=3.0103;FS=2.312;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.22;ReadPosRankSum=0.390;SOR=0.625;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:99,110:209:99:2834,0,2238
chr5	176523855	.	G	GTCCTCT	376.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.966;DP=26;ExcessHet=3.0103;FS=0.000;MQ=58.04;MQRankSum=-2.058e+00;QD=14.47;ReadPosRankSum=-2.340e-01;SOR=0.813;VQSLOD=0.405;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,11:26:99:0|1:176523855_G_GTCCTCT:385,0,991:176523855
chr5	176523870	.	T	TTCCTCC	1072.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.69;DP=23;ExcessHet=3.0103;FS=0.000;MQ=56.83;MQRankSum=-4.490e-01;QD=25.55;ReadPosRankSum=0.473;SOR=0.602;VQSLOD=0.597;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,9:23:99:0|1:176523855_G_GTCCTCT:326,0,926:176523855
chr5	176523879	.	C	CTCCTCCTCCTCT	242.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.351;DP=17;ExcessHet=3.0103;FS=0.000;MQ=53.88;MQRankSum=-2.860e-01;QD=14.25;ReadPosRankSum=0.098;SOR=0.368;VQSLOD=0.481;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:10,7:17:99:0|1:176523855_G_GTCCTCT:251,0,847:176523855
chr5	176563079	rs79928962	A	G	862.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.25;ReadPosRankSum=1.60;SOR=0.763;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,29:50:99:871,0,522
chr5	176564189	rs1052432	G	A	61.34	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.310e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.45;ReadPosRankSum=0.967;SOR=1.179;VQSLOD=23.56;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:70,0,32
chr5	176630984	rs7721671	T	C	1065.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.965e+00;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.30;ReadPosRankSum=-6.320e-01;SOR=3.611;VQSLOD=17.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,9:9:27:336,27,0
chr5	176636549	rs149092444	A	AT	76.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.697;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.90;ReadPosRankSum=0.697;SOR=0.495;VQSLOD=5.84;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:85:85,0,124
chr5	176636882	rs1363405	C	T	1717.10	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-4.480e-01;DB;DP=60;ExcessHet=0.4576;FS=2.962;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.62;ReadPosRankSum=-8.030e-01;SOR=0.174;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	1/1:2,58:60:99:1734,105,0
chr5	176637471	rs28932177	G	A	965.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.352e+00;DB;DP=75;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.87;ReadPosRankSum=1.53;SOR=0.646;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:38,37:75:99:974,0,1123
chr5	176637576	rs28932178	T	C	1323.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.37;DB;DP=99;ExcessHet=3.0103;FS=2.616;MQ=59.96;MQRankSum=-9.700e-01;POSITIVE_TRAIN_SITE;QD=13.37;ReadPosRankSum=-6.760e-01;SOR=0.455;VQSLOD=2.16;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:49,50:99:99:1332,0,1142
chr5	176638506	rs28932179	G	C	1594.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.406;DB;DP=112;ExcessHet=3.0103;FS=0.705;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.23;ReadPosRankSum=-2.910e-01;SOR=0.698;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,58:112:99:1603,0,1418
chr5	176639105	rs28932181	T	C	582.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.450e-01;DB;DP=40;ExcessHet=3.0103;FS=1.247;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=-1.129e+00;SOR=1.085;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,22:40:99:591,0,450
chr5	176639217	rs35159794	T	TA	227.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.392;DB;DP=18;ExcessHet=3.9794;FS=1.328;MQ=60.00;MQRankSum=0.00;QD=5.29;ReadPosRankSum=-1.020e-01;SOR=1.085;VQSLOD=5.45;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,11:18:98:230,0,98
chr5	176639304	rs6556305	C	G	1060.83	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.317;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.31;ReadPosRankSum=0.297;SOR=0.813;VQSLOD=23.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:243,21,0
chr5	176665079	rs34640392	CT	C	108.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.560;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.84;ReadPosRankSum=0.820;SOR=1.112;VQSLOD=7.08;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:117,0,229
chr5	176675166	rs200890017	AT	A	731.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.340e-01;DB;DP=61;ExcessHet=3.0103;FS=0.992;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.99;ReadPosRankSum=0.751;SOR=0.557;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:32,29:61:99:740,0,833
chr5	176683794	rs6890368	A	G	219.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.769;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.93;ReadPosRankSum=-1.050e-01;SOR=1.609;VQSLOD=23.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:93:228,0,93
chr5	176684229	rs373383515	C	T	590.60	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.970e-01;DB;DP=34;ExcessHet=6.9897;FS=1.125;MQ=59.85;MQRankSum=0.00;QD=10.36;ReadPosRankSum=0.098;SOR=1.027;VQSLOD=5.83;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:19,15:34:99:0|1:176684225_C_CTTT:512,0,691:176684225
chr5	176684233	rs6872392	T	C	51.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.420e-01;DB;DP=28;ExcessHet=3.0103;FS=1.944;MQ=59.78;MQRankSum=-1.650e+00;NEGATIVE_TRAIN_SITE;QD=1.83;ReadPosRankSum=1.89;SOR=1.207;VQSLOD=-2.202e+00;culprit=QD	GT:AD:DP:GQ:PL	0/1:21,7:28:60:60,0,710
chr5	176686815	rs80104688	G	T	907.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.214e+00;DB;DP=53;ExcessHet=3.0103;FS=1.077;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.12;ReadPosRankSum=-6.760e-01;SOR=0.869;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,35:53:99:916,0,428
chr5	176686830	rs76796411	T	G	911.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.448;DB;DP=58;ExcessHet=3.0103;FS=1.033;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.938;SOR=0.927;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,36:58:99:920,0,475
chr5	176694481	rs10071491	T	A	217.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.366;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.04;ReadPosRankSum=1.47;SOR=2.584;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,6:7:13:226,0,13
chr5	176701048	.	G	T	32.04	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=10.68;ReadPosRankSum=-9.670e-01;SOR=0.223;VQSLOD=21.43;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:33:40,0,33
chr5	176707544	rs79098301	G	A	1197.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.970e-01;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=1.30;SOR=0.701;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:36,45:81:99:1206,0,922
chr5	176710547	rs28395268	C	G	472.32	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.15;SOR=3.611;VQSLOD=21.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:224,18,0
chr5	176710684	rs77309295	G	A	421.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.330e-01;DB;DP=28;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.04;ReadPosRankSum=0.600;SOR=0.765;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,18:28:99:430,0,230
chr5	176716159	rs114622163	A	G	90.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.10;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=1.98;SOR=0.283;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,3:9:99:99,0,210
chr5	176721119	rs35848863	G	A	1241.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.590e-01;DB;DP=81;ExcessHet=3.0103;FS=0.851;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.32;ReadPosRankSum=0.498;SOR=0.522;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,44:81:99:1250,0,1032
chr5	176721151	rs34165241	T	C	1289.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.411e+00;DB;DP=80;ExcessHet=3.0103;FS=1.813;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.12;ReadPosRankSum=-4.850e-01;SOR=0.594;VQSLOD=22.98;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,45:80:99:1298,0,996
chr5	176721198	rs28580074	T	C	9763.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.870e-01;DB;DP=88;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.90;ReadPosRankSum=0.689;SOR=0.243;VQSLOD=22.14;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,87:88:99:2923,225,0
chr5	176729736	.	ACC	A,AC	5627.92	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=-8.230e-01;DP=75;ExcessHet=3.0103;FS=0.000;MQ=59.81;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.79;ReadPosRankSum=1.50;SOR=2.130;VQSLOD=6.75;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,11,63:75:66:1882,1534,1634,260,0,66
chr5	176731452	rs28362590	G	T	4165.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.72;SOR=5.038;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,41:41:99:1630,123,0
chr5	176733116	rs4631	A	G	14793.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=149;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.32;SOR=1.053;VQSLOD=20.48;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,149:149:99:5043,447,0
chr5	176733341	rs4073745	A	G	5306.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.263e+00;DB;DP=162;ExcessHet=3.9794;FS=2.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.79;ReadPosRankSum=0.953;SOR=0.554;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:65,97:162:99:2825,0,1860
chr5	176733616	rs9834	T	C	8369.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.69;SOR=0.897;VQSLOD=20.47;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2497,237,0
chr5	176735187	rs10051822	G	T	110.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.59;SOR=1.609;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:49,6,0
chr5	176737309	rs7732626	A	G	249.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.17;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.705;SOR=0.569;VQSLOD=23.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,8:17:99:258,0,218
chr5	176737484	rs149176900	G	A	930.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.319;DB;DP=65;ExcessHet=3.0103;FS=2.058;MQ=60.00;MQRankSum=0.00;QD=14.31;ReadPosRankSum=2.26;SOR=0.475;VQSLOD=21.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,36:65:99:939,0,725
chr5	176737720	rs13190036	A	G	8209.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=0.716;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3028,294,0
chr5	176737754	rs11412917	A	AT	1232.29	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.580e-01;DB;DP=84;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.931;SOR=0.610;VQSLOD=7.34;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:43,41:84:99:1241,0,1353
chr5	176761535	rs11738681	A	G	2775.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.030e+00;DB;DP=70;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.42;ReadPosRankSum=-2.240e-01;SOR=0.747;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:33,37:70:99:1075,0,923
chr5	176765395	rs11748912	G	A	2592.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.60;DB;DP=54;ExcessHet=6.9897;FS=8.505;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.39;ReadPosRankSum=-1.903e+00;SOR=2.306;VQSLOD=18.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,29:54:99:957,0,713
chr5	176793584	rs142008831	TCTGGCCCTGTCTGTCTGG	T	1607.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.670e-01;DB;DP=81;ExcessHet=3.0103;FS=1.819;MQ=60.00;MQRankSum=0.00;QD=19.84;ReadPosRankSum=0.322;SOR=0.939;VQSLOD=6.13;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:39,42:81:99:1616,0,5786
chr5	176794191	rs12654812	G	A	485.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.061e+00;DB;DP=10;ExcessHet=3.9794;FS=7.166;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.21;ReadPosRankSum=1.47;SOR=2.359;VQSLOD=19.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,4:10:99:120,0,228
chr5	176798070	.	CGGGCCGGGGCCG	C	58.50	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.04;DP=5;ExcessHet=3.0103;FS=0.000;MQ=59.59;MQRankSum=0.00;QD=11.70;SOR=0.446;VQSLOD=5.80;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,2:5:66:66,0,153
chr5	176831826	rs17876030	C	G	9153.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=3.0103;FS=0.000;MQ=59.94;POSITIVE_TRAIN_SITE;QD=31.28;SOR=1.010;VQSLOD=4.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:3064,282,0
chr5	176831980	rs17876029	T	C	15062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=174;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.18;SOR=1.371;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,174:174:99:5499,522,0
chr5	176833303	rs4976648	T	C	449.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.45;DB;DP=7;ExcessHet=1.5490;FS=0.000;MQ=59.24;MQRankSum=-6.740e-01;NEGATIVE_TRAIN_SITE;QD=29.99;ReadPosRankSum=0.816;SOR=1.911;VQSLOD=-1.316e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,7:7:21:1|1:176833303_T_C:310,21,0:176833303
chr5	176833306	rs4976692	A	G	449.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.718e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=59.13;MQRankSum=-5.660e-01;NEGATIVE_TRAIN_SITE;QD=34.61;ReadPosRankSum=0.484;SOR=2.147;VQSLOD=-1.303e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:21:1|1:176833303_T_C:310,21,0:176833303
chr5	176833317	rs7709674	C	A	106.29	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=56.47;QD=32.05;SOR=2.833;VQSLOD=2.05;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:121,9,0
chr5	176857769	rs28726329	A	G	1277.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.59;SOR=4.921;VQSLOD=21.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,15:15:45:541,45,0
chr5	176858049	rs867755	C	T	2478.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.461;DB;DP=64;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.52;ReadPosRankSum=0.330;SOR=0.657;VQSLOD=23.43;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,64:64:99:2053,192,0
chr5	176859848	rs2731664	C	A	6701.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.905;DB;DP=152;ExcessHet=1.5490;FS=4.176;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.52;ReadPosRankSum=1.75;SOR=0.984;VQSLOD=23.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,152:152:99:4908,456,0
chr5	176862963	rs4976695	T	A	2349.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.980e-01;DB;DP=45;ExcessHet=1.5490;FS=0.875;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.17;ReadPosRankSum=0.514;SOR=0.900;VQSLOD=22.88;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1364,135,0
chr5	176863519	rs1130857	G	C	3519.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.180e-01;DB;DP=74;ExcessHet=1.5490;FS=4.351;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.59;ReadPosRankSum=1.47;SOR=0.461;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,74:74:99:2368,222,0
chr5	176867943	rs335435	A	G	3198.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-6.380e-01;DB;DP=62;ExcessHet=1.5490;FS=2.217;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.51;ReadPosRankSum=0.030;SOR=0.495;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,62:62:99:2055,186,0
chr5	176885178	rs28538572	A	G	11909.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=34.93;SOR=1.022;VQSLOD=19.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3324,285,0
chr5	176885499	rs2544809	T	C	7808.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.732;DB;DP=167;ExcessHet=1.5490;FS=1.601;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.38;ReadPosRankSum=-1.435e+00;SOR=0.583;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,167:167:99:5579,500,0
chr5	176886539	rs385981	C	T	581.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.067e+00;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.45;ReadPosRankSum=-5.280e-01;SOR=2.303;VQSLOD=21.89;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:419,33,0
chr5	176887456	rs201548561	G	A	1504.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.049;DB;DP=102;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=14.75;ReadPosRankSum=1.41;SOR=0.793;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,51:102:99:1513,0,1380
chr5	176893666	.	C	T	605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.39;DP=51;ExcessHet=3.0103;FS=5.579;MQ=60.00;MQRankSum=0.00;QD=11.87;ReadPosRankSum=1.31;SOR=1.781;VQSLOD=20.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,21:51:99:614,0,871
chr5	176894756	rs2545794	C	T	6481.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.04;DB;DP=250;ExcessHet=3.9794;FS=1.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.73;ReadPosRankSum=-3.340e-01;SOR=0.836;VQSLOD=23.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:138,112:250:99:3127,0,3601
chr5	176895030	rs28557366	C	T	202.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.350e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=16.85;ReadPosRankSum=0.709;SOR=0.631;VQSLOD=21.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:211,0,174
chr5	176895817	rs446104	G	A	18463.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=148;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=26.98;SOR=1.115;VQSLOD=3.27;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,148:148:99:1|1:176895817_G_A:6614,448,0:176895817
chr5	176895818	rs371070	C	A	18463.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=147;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=29.23;SOR=1.061;VQSLOD=3.89;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,147:147:99:1|1:176895817_G_A:6614,448,0:176895817
chr5	176916516	rs335462	C	T	14998.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.810e-01;DB;DP=202;ExcessHet=3.0103;FS=1.615;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.95;ReadPosRankSum=1.03;SOR=0.510;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,202:202:99:6179,604,0
chr5	176917078	rs734825	T	C	8306.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.18;SOR=1.404;VQSLOD=20.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,89:89:99:2924,267,0
chr5	176917713	rs368184693	GGGAAGGAA	G,GGGAA	812.16	PASS	AC=1,1;AF=0.500,0.500;AN=2;DB;DP=8;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=32.60;SOR=4.615;VQSLOD=2.56;culprit=SOR	GT:AD:DP:GQ:PL	1/2:0,4,4:8:99:333,168,187,165,0,153
chr5	176930135	rs28376231	G	A	11025.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.82;DB;DP=119;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.93;ReadPosRankSum=-6.600e-01;SOR=0.746;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,119:119:99:3862,356,0
chr5	176930171	rs138153794	AGAG	A	13893.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.110e+00;DB;DP=130;ExcessHet=3.0103;FS=3.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.05;ReadPosRankSum=-5.500e-02;SOR=0.900;VQSLOD=7.27;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,130:130:99:5841,391,0
chr5	176930651	rs337366	G	A	134.35	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.842;DB;DP=2;ExcessHet=1.5490;FS=3.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.19;ReadPosRankSum=1.04;SOR=0.223;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:80,6,0
chr5	176935159	rs76251313	T	C	519.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.59;DB;DP=37;ExcessHet=3.0103;FS=6.057;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.03;ReadPosRankSum=-9.050e-01;SOR=2.093;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,16:37:99:528,0,592
chr5	176935215	rs55761704	GC	G	4438.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.70;SOR=2.269;VQSLOD=6.20;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1527,144,0
chr5	176936272	rs2161110	G	T	232.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776e+00;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.35;ReadPosRankSum=-1.452e+00;SOR=1.022;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:241,0,175
chr5	176936300	rs337400	C	A	856.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.776e+00;DB;DP=22;ExcessHet=6.9897;FS=3.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.28;ReadPosRankSum=-7.050e-01;SOR=2.066;VQSLOD=21.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:227,0,484
chr5	176936590	rs2112181	T	C	1469.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.735;DB;DP=107;ExcessHet=3.0103;FS=1.543;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.73;ReadPosRankSum=1.96;SOR=0.868;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,57:107:99:1478,0,1162
chr5	176936650	rs28565502	T	C	8685.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.60;SOR=1.236;VQSLOD=19.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,81:81:99:2742,243,0
chr5	176936819	rs3749728	C	G	176.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.43;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.63;ReadPosRankSum=0.204;SOR=1.179;VQSLOD=23.60;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:96:185,0,96
chr5	176938681	rs28695578	C	T	7185.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=55;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.71;SOR=2.712;VQSLOD=20.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,55:55:99:1837,164,0
chr5	176939051	rs28464438	T	C	4922.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=31;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.30;SOR=2.093;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1273,93,0
chr5	176939688	rs28544348	C	T	18889.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=207;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.07;SOR=0.857;VQSLOD=20.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,207:207:99:6632,616,0
chr5	176939735	rs335436	A	G	19794.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=208;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.16;SOR=0.878;VQSLOD=20.40;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,208:208:99:6733,624,0
chr5	176940274	rs335437	C	T	4611.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.37;DB;DP=76;ExcessHet=6.9897;FS=5.619;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.83;ReadPosRankSum=-1.705e+00;SOR=1.076;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,37:76:99:1224,0,1236
chr5	176940384	rs335438	G	A	10259.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.514;DB;DP=270;ExcessHet=6.9897;FS=0.525;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.23;ReadPosRankSum=0.593;SOR=0.752;VQSLOD=23.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:143,127:270:99:3105,0,3378
chr5	176940871	rs335439	G	C	9125.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=106;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.43;SOR=1.575;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,106:106:99:3462,318,0
chr5	176943673	rs2242320	C	T	773.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.901;DB;DP=57;ExcessHet=3.0103;FS=2.533;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.57;ReadPosRankSum=0.665;SOR=1.179;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,26:57:99:782,0,951
chr5	176948821	rs28491669	T	A	1838.66	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.67;SOR=5.464;VQSLOD=21.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:321,24,0
chr5	176949322	rs337385	T	C	670.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.655e+00;DB;DP=9;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.20;ReadPosRankSum=-4.640e-01;SOR=0.850;VQSLOD=22.89;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:154,0,137
chr5	176950794	rs28723606	A	G	3881.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=39;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.35;SOR=4.136;VQSLOD=20.79;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1292,117,0
chr5	176950823	rs28629788	G	C	979.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.813e+00;DB;DP=63;ExcessHet=3.0103;FS=1.335;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=-2.750e-01;SOR=0.437;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,33:63:99:988,0,967
chr5	176950879	rs28688891	T	C	13592.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=132;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.81;SOR=1.928;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,132:132:99:4229,395,0
chr5	176951276	rs337382	A	G	16118.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=183;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.96;SOR=1.037;VQSLOD=20.11;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,183:183:99:5800,549,0
chr5	176963333	rs74292777	G	C	1402.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.041e+00;DB;DP=91;ExcessHet=3.0103;FS=2.794;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.41;ReadPosRankSum=0.230;SOR=0.726;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,54:91:99:1411,0,957
chr5	176963349	rs335460	G	A	7631.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.120e-01;DB;DP=95;ExcessHet=3.0103;FS=5.164;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.70;ReadPosRankSum=0.881;SOR=0.604;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,38:95:99:921,0,1528
chr5	176965293	rs28573917	C	T	530.70	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.26;SOR=3.912;VQSLOD=22.01;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:202,15,0
chr5	176981490	.	A	ACGCCG	374.19	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.920e-01;DP=7;ExcessHet=3.9794;FS=3.424;MQ=60.00;MQRankSum=0.00;QD=31.18;ReadPosRankSum=1.47;SOR=0.728;VQSLOD=5.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:1,6:7:17:239,0,17
chr5	177019688	rs4607363	G	C	15854.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=59.95;QD=31.52;SOR=0.860;VQSLOD=2.54;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5732,531,0
chr5	177020928	rs4976703	C	G	272.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.753e+00;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.45;ReadPosRankSum=0.249;SOR=1.085;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,8:14:99:281,0,212
chr5	177022428	rs11545868	C	T	971.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.150e-01;DB;DP=64;ExcessHet=3.0103;FS=0.996;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.18;ReadPosRankSum=-3.260e-01;SOR=0.884;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:24,40:64:99:980,0,548
chr5	177022652	rs4380682	A	G	434.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.57;SOR=1.022;VQSLOD=19.74;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:135,12,0
chr5	177031348	rs11537644	T	C	5894.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.60;DB;DP=122;ExcessHet=1.5490;FS=4.933;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.76;ReadPosRankSum=2.30;SOR=1.041;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,122:122:99:4065,366,0
chr5	177031602	rs28499092	C	G	10547.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.80;SOR=2.850;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,95:95:99:3362,285,0
chr5	177031954	rs28742937	A	G	6199.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.43;DB;DP=51;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.46;ReadPosRankSum=-3.780e-01;SOR=0.762;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,51:51:99:1|1:177031954_A_G:2393,163,0:177031954
chr5	177031967	rs28698736	T	C	8990.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.89;SOR=1.348;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,59:59:99:1|1:177031954_A_G:2550,178,0:177031954
chr5	177032050	rs28473516	C	G	1225.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.039e+00;DB;DP=91;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.46;ReadPosRankSum=-2.510e-01;SOR=0.724;VQSLOD=22.76;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,50:91:99:1234,0,1037
chr5	177032372	rs28496282	G	C	195.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=5;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.80;SOR=1.022;VQSLOD=20.29;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,5:5:15:211,15,0
chr5	177035352	rs968405	C	T	130.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.712;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.47;ReadPosRankSum=-2.310e-01;SOR=0.527;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,4:9:99:139,0,185
chr5	177035964	rs729459	T	C	2942.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.739;DB;DP=148;ExcessHet=3.9794;FS=4.774;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.40;ReadPosRankSum=-6.740e-01;SOR=0.981;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:83,65:148:99:1506,0,2073
chr5	177036043	rs6600953	A	G	9838.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=121;ExcessHet=3.0103;FS=0.000;MQ=59.98;POSITIVE_TRAIN_SITE;QD=31.04;SOR=1.190;VQSLOD=4.77;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,121:121:99:3505,363,0
chr5	177036231	rs729460	T	C	76.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.019e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=2.13;SOR=0.223;VQSLOD=22.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:85:85,0,222
chr5	177053334	rs5013573	T	C	2921.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=54.11;POSITIVE_TRAIN_SITE;QD=31.48;SOR=4.698;VQSLOD=4.62;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1011,81,0
chr5	177054649	rs72309277	ATT	A,AT	1921.79	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=2.38;DB;DP=20;ExcessHet=3.0103;FS=5.373;MQ=59.42;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.12;ReadPosRankSum=-1.197e+00;SOR=3.407;VQSLOD=5.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:2,7,4:20:40:348,40,76,185,0,179
chr5	177054672	rs7728458	T	C	2735.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=59.50;POSITIVE_TRAIN_SITE;QD=31.51;SOR=3.180;VQSLOD=4.93;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,18:18:63:864,63,0
chr5	177058655	rs6876792	A	G	14320.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.650e-01;DB;DP=167;ExcessHet=3.0103;FS=1.595;MQ=53.18;MQRankSum=-2.895e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=26.52;ReadPosRankSum=1.95;SOR=0.594;VQSLOD=-1.354e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:82,85:167:99:2109,0,2022
chr5	177058766	rs2334991	G	A	2807.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.939e+00;DB;DP=260;ExcessHet=3.0103;FS=14.806;MQ=51.15;MQRankSum=-2.617e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=10.80;ReadPosRankSum=0.378;SOR=0.417;VQSLOD=-1.426e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:140,120:260:99:2816,0,3866
chr5	177059760	rs150057830	T	G	1672.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=76;ExcessHet=3.0103;FS=0.988;MQ=55.07;MQRankSum=-5.319e+00;QD=22.00;ReadPosRankSum=0.524;SOR=0.951;VQSLOD=-3.696e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:33,43:76:99:0|1:177059760_T_G:1681,0,1843:177059760
chr5	177059762	rs145429332	G	A	1672.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.591;DB;DP=77;ExcessHet=3.0103;FS=0.976;MQ=55.13;MQRankSum=-5.386e+00;QD=21.72;ReadPosRankSum=0.631;SOR=0.902;VQSLOD=-3.804e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:34,43:77:99:0|1:177059760_T_G:1681,0,1843:177059760
chr5	177099274	.	C	A	957.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.646e+00;DP=43;ExcessHet=6.9897;FS=10.880;MQ=53.62;MQRankSum=-7.377e+00;QD=5.88;ReadPosRankSum=2.37;SOR=0.190;VQSLOD=-4.673e+00;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:21,22:43:99:1|0:177099259_AC_A:555,0,848:177099259
chr5	177158620	rs74542560	T	C	1592.30	PASS	AC=2;AF=1.00;AN=2;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=40.74;QD=30.62;SOR=1.609;VQSLOD=-4.531e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,52:52:99:1603,155,0
chr5	177161891	rs140979906	A	G	5907.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=58;ExcessHet=3.0103;FS=0.000;MQ=39.73;QD=28.16;SOR=1.788;VQSLOD=-4.664e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:2012,174,0
chr5	177179933	.	C	CA	154.69	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.190e-01;DP=12;ExcessHet=6.9897;FS=0.000;MQ=46.42;MQRankSum=-2.943e+00;QD=3.29;ReadPosRankSum=-1.540e-01;SOR=0.578;VQSLOD=-1.355e-01;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:6,4:12:41:41,0,123
chr5	177180236	rs76556918	G	A	7227.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=57;ExcessHet=3.0103;FS=0.000;MQ=56.61;MQRankSum=3.26;NEGATIVE_TRAIN_SITE;QD=31.15;ReadPosRankSum=0.903;SOR=0.692;VQSLOD=-2.922e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,27:57:99:783,0,893
chr5	177310717	rs139876295	A	G	7081.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=77;ExcessHet=3.0103;FS=0.000;MQ=37.16;POSITIVE_TRAIN_SITE;QD=32.19;SOR=2.156;VQSLOD=-4.538e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,77:77:99:2408,231,0
chr5	177348037	rs200716870	C	CTTTG	2250.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=34.87;QD=31.78;SOR=1.244;VQSLOD=4.74;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,16:16:48:687,48,0
chr5	177377330	rs62397831	G	T	4882.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.180e-01;DB;DP=66;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.13;ReadPosRankSum=-9.370e-01;SOR=0.700;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,66:66:99:1939,198,0
chr5	177377433	rs62397832	G	A	7634.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-5.650e-01;DB;DP=76;ExcessHet=3.0103;FS=1.882;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.34;ReadPosRankSum=-2.450e-01;SOR=0.488;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,76:76:99:2607,227,0
chr5	177377440	rs62397833	A	G	6929.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.820e-01;DB;DP=73;ExcessHet=3.0103;FS=0.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.50;ReadPosRankSum=-7.260e-01;SOR=0.766;VQSLOD=22.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,28:73:99:589,0,1125
chr5	177377525	rs13190413	A	G	2852.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.970e-01;DB;DP=31;ExcessHet=3.0103;FS=2.269;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.79;ReadPosRankSum=-6.800e-02;SOR=0.484;VQSLOD=22.17;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,31:31:93:1117,93,0
chr5	177377648	rs4958945	G	T	230	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.73;SOR=3.912;VQSLOD=21.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:124,9,0
chr5	177419967	rs1800197	C	T	1326.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.282;DB;DP=58;ExcessHet=3.9794;FS=0.697;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.550;SOR=0.612;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,27:58:99:721,0,823
chr5	177422603	rs7443714	A	G	1824.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=17;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=3.342;VQSLOD=21.44;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,17:17:51:588,51,0
chr5	177422823	rs4072924	C	T	4761.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.710e-01;DB;DP=121;ExcessHet=6.9897;FS=2.374;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.45;ReadPosRankSum=0.290;SOR=0.846;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,62:121:99:1593,0,1625
chr5	177422876	rs7445271	T	C	13896.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.382;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=34.57;ReadPosRankSum=1.63;SOR=0.939;VQSLOD=22.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4469,411,0
chr5	177422908	rs1135320	A	G	5701.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.443e+00;DB;DP=153;ExcessHet=6.9897;FS=1.796;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.945;SOR=0.560;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:75,78:153:99:1925,0,1925
chr5	177423144	rs13187293	T	G	2912.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.97;DB;DP=69;ExcessHet=6.9897;FS=4.464;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.42;ReadPosRankSum=0.920;SOR=1.047;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,22:69:99:596,0,1235
chr5	177423281	rs12654239	C	A	437.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=-1.500e-02;SOR=0.963;VQSLOD=23.00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:67:142,0,67
chr5	177469062	rs190921663	G	C	1031.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.853e+00;DB;DP=15;ExcessHet=3.9794;FS=0.000;MQ=44.45;MQRankSum=0.267;QD=20.22;ReadPosRankSum=0.653;SOR=0.941;VQSLOD=-4.060e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,11:15:99:361,0,115
chr5	177469123	rs13166036	C	T	363.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.60;DB;DP=42;ExcessHet=3.0103;FS=1.317;MQ=48.59;MQRankSum=-4.972e+00;QD=8.65;ReadPosRankSum=-8.680e-01;SOR=0.964;VQSLOD=-4.089e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,14:42:99:372,0,712
chr5	177482472	rs3088218	T	C	1680.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.800e-01;DB;DP=42;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.03;ReadPosRankSum=-6.960e-01;SOR=0.887;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,19:42:99:482,0,656
chr5	177482694	rs11953084	T	C	5982.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.09;DB;DP=135;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.84;ReadPosRankSum=1.31;SOR=0.684;VQSLOD=23.23;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,64:135:99:1659,0,1816
chr5	177483118	rs11953798	T	C	2015.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.62;DB;DP=26;ExcessHet=3.9794;FS=12.957;MQ=54.02;MQRankSum=-2.793e+00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=19.76;ReadPosRankSum=0.676;SOR=0.149;VQSLOD=-4.777e-01;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:15,11:26:99:0|1:177483112_G_C:380,0,464:177483112
chr5	177546990	rs13163671	G	A	2571.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.19;DB;DP=48;ExcessHet=6.9897;FS=2.682;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.97;ReadPosRankSum=0.522;SOR=0.441;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,20:48:99:557,0,781
chr5	177547247	rs7719667	T	C	10830.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=107;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.27;SOR=1.077;VQSLOD=20.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,107:107:99:3404,321,0
chr5	177547336	rs3812082	G	A	2848.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.55;DB;DP=130;ExcessHet=3.9794;FS=6.161;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.67;ReadPosRankSum=1.07;SOR=1.074;VQSLOD=22.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,53:130:99:1502,0,2055
chr5	177562183	rs72536798	C	CTG	1552.97	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.36;DB;DP=21;ExcessHet=6.9897;FS=2.998;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.06;ReadPosRankSum=0.747;SOR=1.371;VQSLOD=7.28;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:14,7:21:99:252,0,597
chr5	177562251	rs10060446	G	A	1992.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.630e-01;DB;DP=55;ExcessHet=6.9897;FS=0.577;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-7.050e-01;SOR=0.636;VQSLOD=22.58;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,24:55:99:609,0,800
chr5	177565520	rs10657977	T	TTGTGTG	341.84	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;DB;DP=11;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.37;ReadPosRankSum=-1.501e+00;SOR=0.275;VQSLOD=6.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,4:11:99:147,0,478
chr5	177570759	rs6601218	T	C	5178.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.65;SOR=1.661;VQSLOD=20.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1172,96,0
chr5	177572927	rs6873523	C	T	366.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.674;DB;DP=4;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.58;ReadPosRankSum=0.524;SOR=1.061;VQSLOD=23.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,2:4:68:71,0,68
chr5	177574901	rs7380934	C	G	9199.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.660e-01;DB;DP=193;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.83;ReadPosRankSum=0.493;SOR=0.670;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,82:193:99:2132,0,3132
chr5	177612734	rs7720480	T	C	3374.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.59;DB;DP=23;ExcessHet=3.0103;FS=6.579;MQ=59.95;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.99;ReadPosRankSum=-1.040e-01;SOR=1.685;VQSLOD=5.64;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,23:23:81:1|1:177612734_T_C:1215,81,0:177612734
chr5	177612739	rs72648831	G	T	1224.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.420e-01;DB;DP=27;ExcessHet=3.9794;FS=2.535;MQ=59.93;MQRankSum=0.00;QD=19.43;ReadPosRankSum=0.877;SOR=1.251;VQSLOD=5.05;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:12,15:27:99:0|1:177612734_T_C:500,0,374:177612734
chr5	177612744	rs7715796	A	G	3628.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.714;DB;DP=30;ExcessHet=3.0103;FS=4.202;MQ=59.95;MQRankSum=0.00;QD=34.89;ReadPosRankSum=-2.530e-01;SOR=1.374;VQSLOD=5.02;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,30:30:90:1|1:177612734_T_C:1303,90,0:177612734
chr5	177612983	rs13169133	G	A	7060.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.60;DB;DP=132;ExcessHet=6.9897;FS=1.729;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.02;ReadPosRankSum=1.46;SOR=0.819;VQSLOD=23.06;culprit=MQ	GT:AD:DP:GQ:PL	0/1:61,71:132:99:1837,0,1487
chr5	177613123	rs10479619	T	C	12488.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=105;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.86;SOR=1.088;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,105:105:99:3186,314,0
chr5	177613168	rs13184406	C	T	4201.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.58;DB;DP=77;ExcessHet=6.9897;FS=6.264;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=1.59;SOR=1.016;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,36:77:99:983,0,992
chr5	177613296	rs13184677	C	T	3005.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=50;ExcessHet=6.9897;FS=4.238;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-1.011e+00;SOR=1.015;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,25:50:99:701,0,721
chr5	177614001	rs3812083	T	C	1494.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.600e-01;DB;DP=42;ExcessHet=6.9897;FS=1.532;MQ=59.87;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=0.560;SOR=0.507;VQSLOD=6.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,24:42:99:626,0,482
chr5	177614090	rs2913782	G	C	4464.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.640e-01;DB;DP=67;ExcessHet=3.9794;FS=1.751;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.78;ReadPosRankSum=0.257;SOR=0.547;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,29:67:99:0|1:177614090_G_C:1090,0,1526:177614090
chr5	177614094	rs2961665	C	G	4430.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.610e-01;DB;DP=68;ExcessHet=3.9794;FS=1.736;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.41;ReadPosRankSum=0.937;SOR=0.551;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,30:68:99:0|1:177614090_G_C:1097,0,1523:177614090
chr5	177614137	rs3812086	C	T	2699.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.023e+00;DB;DP=90;ExcessHet=6.9897;FS=2.846;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.84;ReadPosRankSum=-2.700e-02;SOR=0.891;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,41:90:99:1033,0,1371
chr5	177614183	rs2913783	T	C	9062.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=98;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.48;SOR=0.700;VQSLOD=20.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,98:98:99:3194,294,0
chr5	177614366	rs3828691	C	T	1418.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.48;DB;DP=51;ExcessHet=6.9897;FS=1.501;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.14;ReadPosRankSum=1.13;SOR=0.846;VQSLOD=5.60;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:26,25:51:99:0|1:177614366_C_T:688,0,616:177614366
chr5	177614387	rs6886332	A	G	4628.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=29.22;SOR=1.863;VQSLOD=19.98;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,40:40:99:1|1:177614366_C_T:1796,120,0:177614366
chr5	177614401	rs11960863	C	G	1055.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.665;DB;DP=38;ExcessHet=3.9794;FS=2.392;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.49;ReadPosRankSum=1.89;SOR=0.375;VQSLOD=22.46;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:20,18:38:99:0|1:177614366_C_T:394,0,535:177614366
chr5	177631783	rs17080447	G	A	241.21	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.85;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.08;ReadPosRankSum=1.28;SOR=0.458;VQSLOD=21.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,5:11:99:168,0,168
chr5	177633116	rs3812089	A	G	1730.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.05;DB;DP=21;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.05;ReadPosRankSum=-2.970e-01;SOR=1.012;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,21:21:63:868,63,0
chr5	177634401	rs7705458	T	C	1914.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=25.96;SOR=4.758;VQSLOD=20.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,11:11:33:480,33,0
chr5	177636990	rs111881090	CT	C	1762.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=49;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.19;ReadPosRankSum=0.835;SOR=0.658;VQSLOD=7.37;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:24,25:49:99:775,0,745
chr5	177637447	rs2913751	G	A	2914.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.081;DB;DP=120;ExcessHet=3.9794;FS=0.917;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.33;ReadPosRankSum=0.017;SOR=0.618;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,49:120:99:1194,0,1874
chr5	177642085	rs72817294	A	G	948.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.18;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=1.33;SOR=0.563;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,11:29:99:362,0,571
chr5	177642177	rs2913748	C	T	2061.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.490e-01;DB;DP=100;ExcessHet=3.9794;FS=2.446;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.50;ReadPosRankSum=0.345;SOR=0.867;VQSLOD=23.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,34:100:99:780,0,1844
chr5	177642518	rs17639362	G	A	308.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.80;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.13;ReadPosRankSum=1.10;SOR=0.804;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:177,0,131
chr5	177649017	rs11750481	C	T	156.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.28;DB;DP=7;ExcessHet=3.9794;FS=3.802;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.01;ReadPosRankSum=0.00;SOR=0.093;VQSLOD=23.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,2:7:58:58,0,177
chr5	177651852	rs13355310	C	T	136.27	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.834e+00;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.71;ReadPosRankSum=-1.834e+00;SOR=1.329;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,4:6:70:145,0,70
chr5	177656671	rs2913863	T	G	385.88	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.100e+00;DB;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=0.241;SOR=0.693;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:266,21,0
chr5	177656900	rs75990575	C	T	2824.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.62;DB;DP=204;ExcessHet=3.0103;FS=1.105;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.84;ReadPosRankSum=0.957;SOR=0.797;VQSLOD=22.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:94,110:204:99:2833,0,2160
chr5	177657172	rs62388741	A	C	76.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.638e+00;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=7.63;ReadPosRankSum=1.69;SOR=0.223;VQSLOD=22.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:85:85,0,269
chr5	177658883	rs2973729	C	A	3335.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=34;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.06;SOR=3.185;VQSLOD=21.56;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1214,102,0
chr5	177658896	rs3749810	A	C	855.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.42;DB;DP=24;ExcessHet=3.9794;FS=7.150;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.00;ReadPosRankSum=1.78;SOR=0.096;VQSLOD=21.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,12:24:99:437,0,355
chr5	177658945	rs2973727	C	T	1349.67	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.76;SOR=3.797;VQSLOD=21.15;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:440,36,0
chr5	177659366	rs2913860	G	A	657.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.140;DB;DP=9;ExcessHet=3.9794;FS=3.098;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=26.32;ReadPosRankSum=0.524;SOR=2.030;VQSLOD=22.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,5:9:99:180,0,109
chr5	177659631	rs2913859	G	A	1430.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.176e+00;DB;DP=20;ExcessHet=3.9794;FS=1.042;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.87;ReadPosRankSum=-9.520e-01;SOR=0.569;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,13:20:99:297,0,165
chr5	177668882	rs2241581	T	C	576.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.330e-01;DB;DP=39;ExcessHet=3.0103;FS=1.795;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=-2.110e-01;SOR=1.170;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,20:39:99:585,0,556
chr5	177668965	rs2241580	C	T	1448.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.71;DB;DP=107;ExcessHet=3.0103;FS=1.618;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.54;ReadPosRankSum=-9.700e-02;SOR=0.895;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,54:107:99:1457,0,1297
chr5	177669413	rs2241579	T	G	939.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.00;DB;DP=92;ExcessHet=3.0103;FS=2.783;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.21;ReadPosRankSum=0.178;SOR=1.040;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:54,38:92:99:948,0,1328
chr5	177673153	rs34435070	AGTGCAGGGACCCAGTGAG	A	605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.287;DB;DP=32;ExcessHet=3.0103;FS=5.979;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.91;ReadPosRankSum=0.998;SOR=0.120;VQSLOD=6.27;culprit=FS	GT:AD:DP:GQ:PL	0/1:16,16:32:99:614,0,2777
chr5	177674431	rs3812092	G	A	1223.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.250e+00;DB;DP=97;ExcessHet=3.0103;FS=0.773;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.61;ReadPosRankSum=0.054;SOR=0.867;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	0/1:45,52:97:99:1232,0,1115
chr5	177674589	rs72819017	C	T	1063.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=81;ExcessHet=3.0103;FS=0.840;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.13;ReadPosRankSum=-3.220e-01;SOR=0.862;VQSLOD=22.69;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,38:81:99:1072,0,1188
chr5	177674995	rs11746830	C	T	1174.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.08;DB;DP=52;ExcessHet=3.0103;FS=5.214;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.58;ReadPosRankSum=-1.052e+00;SOR=0.216;VQSLOD=22.34;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,36:52:99:1183,0,452
chr5	177675217	rs2913851	C	T	12169.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.988;DB;DP=181;ExcessHet=3.0103;FS=2.415;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.34;ReadPosRankSum=-4.770e-01;SOR=0.976;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:89,92:181:99:2236,0,2193
chr5	177675465	rs6894255	C	A	5628.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.818e+00;DB;DP=81;ExcessHet=3.9794;FS=4.081;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.82;ReadPosRankSum=1.71;SOR=1.066;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:43,38:81:99:1079,0,1301
chr5	177676421	rs3812093	G	A	295.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.218e+00;DB;DP=19;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.54;ReadPosRankSum=2.29;SOR=0.602;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,9:19:99:304,0,368
chr5	177676882	rs2913850	G	T	762.07	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.29;SOR=4.514;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:84,6,0
chr5	177676986	rs5873601	GCA	G	438.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.086;DB;DP=16;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.62;ReadPosRankSum=0.268;SOR=0.693;VQSLOD=5.57;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,9:16:99:0|1:177676986_GCA_G:357,0,405:177676986
chr5	177676990	rs201105159	A	G	348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.557e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.77;SOR=0.976;VQSLOD=21.78;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:7,9:16:99:0|1:177676986_GCA_G:357,0,405:177676986
chr5	177679447	rs1549612	C	T	3502.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.64;DB;DP=57;ExcessHet=3.9794;FS=3.011;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.49;ReadPosRankSum=0.502;SOR=0.961;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,25:57:99:653,0,755
chr5	177679654	rs2033200	C	T	1917.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e-01;DB;DP=21;ExcessHet=3.9794;FS=2.788;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.91;ReadPosRankSum=0.544;SOR=1.254;VQSLOD=23.49;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,15:21:99:489,0,159
chr5	177679680	rs2973751	T	C	1861.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.980;DB;DP=14;ExcessHet=3.0103;FS=2.494;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.85;ReadPosRankSum=0.283;SOR=1.727;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,10:14:90:310,0,90
chr5	177683029	rs890804	C	T	897.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.586e+00;DB;DP=18;ExcessHet=1.5490;FS=6.447;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.65;ReadPosRankSum=0.133;SOR=2.215;VQSLOD=20.88;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,8:18:99:232,0,382
chr5	177683185	rs890803	T	C	4392.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.092;DB;DP=65;ExcessHet=3.0103;FS=5.050;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.82;ReadPosRankSum=-1.518e+00;SOR=1.264;VQSLOD=22.94;culprit=MQ	GT:AD:DP:GQ:PL	0/1:37,28:65:99:745,0,938
chr5	177688772	rs2973745	G	A	2164.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.010e+00;DB;DP=106;ExcessHet=3.9794;FS=1.108;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.04;ReadPosRankSum=-6.320e-01;SOR=0.582;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,51:106:99:1134,0,1381
chr5	177715291	rs890801	G	A	1742.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-8.150e-01;DB;DP=45;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.21;ReadPosRankSum=-1.194e+00;SOR=0.870;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,44:45:93:1435,93,0
chr5	177715302	rs5873603	CA	C	1737.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.550e-01;DB;DP=48;ExcessHet=1.5490;FS=1.056;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.00;ReadPosRankSum=-5.780e-01;SOR=1.018;VQSLOD=7.46;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:1,47:48:99:1434,113,0
chr5	177715477	rs2913833	G	T	2545.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.906e+00;DB;DP=58;ExcessHet=1.5490;FS=4.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.72;ReadPosRankSum=1.06;SOR=0.414;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1900,173,0
chr5	177715581	rs2913832	T	C	5157.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.812;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.03;ReadPosRankSum=1.08;SOR=0.661;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,56:56:99:1881,168,0
chr5	177715819	rs2973771	C	G	1326.91	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.940e+00;DB;DP=26;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.64;ReadPosRankSum=-3.290e-01;SOR=0.928;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:971,78,0
chr5	177715918	rs2913831	T	C	449.75	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.189e+00;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.11;ReadPosRankSum=0.652;SOR=2.584;VQSLOD=21.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:257,21,0
chr5	177715981	rs2913830	G	C	79.18	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.04;SOR=2.303;VQSLOD=20.24;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:89,6,0
chr5	177717099	rs2973773	T	A	772.77	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.15;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.91;ReadPosRankSum=0.00;SOR=1.688;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:29:349,29,0
chr5	177717588	rs2973774	G	T	239.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.50;SOR=2.303;VQSLOD=20.23;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:251,18,0
chr5	177733689	rs2973798	C	G	381.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.33;SOR=4.407;VQSLOD=22.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:177733689_C_G:90,6,0:177733689
chr5	177733699	rs2973799	G	C	416.86	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.00;SOR=4.804;VQSLOD=19.23;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:177733689_C_G:127,9,0:177733689
chr5	177734157	rs72819090	C	T	173.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.75;ReadPosRankSum=1.98;SOR=1.609;VQSLOD=22.77;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,5:7:52:182,0,52
chr5	177987740	rs34594012	C	T	851.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.747;DB;DP=26;ExcessHet=3.9794;FS=1.019;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.67;ReadPosRankSum=0.257;SOR=0.511;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,12:26:99:275,0,368
chr5	177987780	rs34884264	G	A	748.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.045e+00;DB;DP=29;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.36;ReadPosRankSum=0.528;SOR=0.811;VQSLOD=22.75;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,17:29:99:412,0,302
chr5	177987896	rs71611445	C	T	483.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.360e-01;DB;DP=20;ExcessHet=3.9794;FS=1.569;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.64;ReadPosRankSum=-2.394e+00;SOR=1.302;VQSLOD=22.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,12:20:99:325,0,217
chr5	177989103	rs11249552	C	A	470.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.01;DB;DP=50;ExcessHet=3.9794;FS=3.307;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.73;ReadPosRankSum=0.834;SOR=0.965;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:41,9:50:99:124,0,990
chr5	178040919	rs560842	G	A	1825.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.13;DB;DP=23;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.03;ReadPosRankSum=0.296;SOR=2.019;VQSLOD=22.63;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,23:23:69:836,69,0
chr5	178049444	rs34183525	C	G	1407.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.011;DB;DP=47;ExcessHet=3.9794;FS=2.803;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.97;ReadPosRankSum=1.26;SOR=0.434;VQSLOD=22.68;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:547,0,664
chr5	178138900	rs56328495	A	AT	3784.98	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.359e+00;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.25;ReadPosRankSum=-1.464e+00;SOR=0.653;VQSLOD=6.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,23:38:99:727,0,448
chr5	178139442	rs1132338	T	G	5612.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.900e-01;DB;DP=86;ExcessHet=3.9794;FS=1.577;MQ=57.59;MQRankSum=-2.034e+00;QD=20.05;ReadPosRankSum=-6.350e-01;SOR=0.823;VQSLOD=-1.494e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,36:86:99:822,0,1341
chr5	178140090	rs1132336	C	T	9448.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.543e+00;DB;DP=155;ExcessHet=3.9794;FS=0.551;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.28;ReadPosRankSum=-5.850e-01;SOR=0.620;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:79,76:155:99:1866,0,2102
chr5	178140630	.	GA	G	48.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.419e+00;DP=19;ExcessHet=3.0103;FS=5.651;MQ=60.00;MQRankSum=0.00;QD=2.54;ReadPosRankSum=1.60;SOR=0.090;VQSLOD=4.19;culprit=QD	GT:AD:DP:GQ:PL	0/1:15,4:19:57:57,0,371
chr5	178155783	.	C	CAAAAAAA	643.11	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DP=4;ExcessHet=3.9794;FS=0.000;MQ=59.49;MQRankSum=0.00;QD=22.97;ReadPosRankSum=1.36;SOR=0.836;VQSLOD=5.87;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,3:4:30:394,30,0
chr5	178288214	rs112879314	C	G	2758.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.672e+00;DB;DP=66;ExcessHet=3.9794;FS=15.247;MQ=46.56;MQRankSum=4.47;QD=14.08;ReadPosRankSum=2.35;SOR=0.223;VQSLOD=-4.768e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,37:66:99:989,0,633
chr5	178294059	rs11952817	T	C	946.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.069e+00;DB;DP=28;ExcessHet=3.9794;FS=1.711;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.56;ReadPosRankSum=0.368;SOR=1.281;VQSLOD=23.40;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,10:28:99:299,0,548
chr5	178310446	rs4130052	C	T	6357.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.506e+00;DB;DP=109;ExcessHet=3.9794;FS=4.149;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.58;ReadPosRankSum=-3.770e-01;SOR=0.483;VQSLOD=23.46;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,109:109:99:3551,326,0
chr5	178359136	rs961030	A	G	4118.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.700e-02;DB;DP=90;ExcessHet=6.9897;FS=3.739;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.50;ReadPosRankSum=-6.000e-01;SOR=0.908;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	0/1:47,43:90:99:1054,0,1183
chr5	178368465	rs111995800	C	CCAAA	6118.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.54;DB;DP=176;ExcessHet=3.9794;FS=5.769;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.24;ReadPosRankSum=0.580;SOR=0.775;VQSLOD=6.70;culprit=FS	GT:AD:DP:GQ:PL	0/1:88,88:176:99:3374,0,5253
chr5	178391860	rs6867221	G	A	6608.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.785;DB;DP=124;ExcessHet=3.9794;FS=0.948;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.85;ReadPosRankSum=-1.180e-01;SOR=0.616;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,124:124:99:3854,370,0
chr5	178396742	rs4700759	G	C	6333.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=59;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.95;SOR=3.387;VQSLOD=21.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,59:59:99:2223,177,0
chr5	178401555	rs7728828	G	A	2647.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=3.05;DB;DP=39;ExcessHet=3.9794;FS=0.833;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.37;ReadPosRankSum=0.985;SOR=0.580;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,39:39:99:1239,117,0
chr5	178401610	rs11740252	C	T	4537.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.142e+00;DB;DP=72;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.73;ReadPosRankSum=0.421;SOR=0.663;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,72:72:99:2216,216,0
chr5	178401703	rs11740277	C	G	5463.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.660e-01;DB;DP=84;ExcessHet=3.9794;FS=2.726;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=1.86;SOR=0.874;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,84:84:99:2530,252,0
chr5	178402407	rs7735200	C	T	812.80	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.690e-01;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.51;ReadPosRankSum=-1.440e+00;SOR=3.528;VQSLOD=17.57;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:292,24,0
chr5	178404573	rs146228548	CT	C	161.92	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.700e-02;DB;DP=39;ExcessHet=6.9897;FS=1.933;MQ=60.00;MQRankSum=0.00;QD=1.54;ReadPosRankSum=0.256;SOR=0.973;VQSLOD=5.17;culprit=QD	GT:AD:DP:GQ:PL	0/1:32,7:39:64:64,0,701
chr5	178407292	rs2856351	C	T	8336.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=79;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.21;SOR=0.930;VQSLOD=20.06;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,79:79:99:2558,234,0
chr5	178410738	rs903988	C	T	16680.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=175;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.77;SOR=0.844;VQSLOD=20.75;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,175:175:99:5528,523,0
chr5	178410839	rs2856348	G	A	8362.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-9.910e-01;DB;DP=153;ExcessHet=3.9794;FS=0.000;MQ=59.93;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.22;ReadPosRankSum=1.35;SOR=0.661;VQSLOD=6.21;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,153:153:99:4664,457,0
chr5	178411290	rs11279361	AGCACGCCTC	A	8550.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=71;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.22;SOR=0.793;VQSLOD=5.56;culprit=QD	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,71:71:99:1|1:178411290_AGCACGCCTC_A:3277,223,0:178411290
chr5	178411315	rs2645341	C	T	8418.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=70;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.72;SOR=0.758;VQSLOD=21.03;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,70:70:99:1|1:178411290_AGCACGCCTC_A:3182,220,0:178411290
chr5	178412273	rs35715923	T	C	3499.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.37;DB;DP=47;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.93;ReadPosRankSum=0.00;SOR=0.781;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,47:47:99:1355,141,0
chr5	178412501	rs9329061	G	A	476.36	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=32.36;SOR=2.494;VQSLOD=19.45;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:178412501_G_A:270,18,0:178412501
chr5	178412507	rs11249607	A	G	435.98	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=33.56;SOR=2.093;VQSLOD=18.96;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:178412501_G_A:270,18,0:178412501
chr5	178412592	rs6880010	T	C	156.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=27.77;SOR=3.258;VQSLOD=19.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:168,12,0
chr5	178412647	rs184483392	G	T	69.72	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.150e+00;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.43;ReadPosRankSum=-3.190e-01;SOR=1.609;VQSLOD=23.13;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:33:78,0,33
chr5	178412702	.	T	TAAA	469.81	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.38;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=29.26;ReadPosRankSum=1.38;SOR=1.270;VQSLOD=5.71;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,2:8:26:251,26,0
chr5	178412716	rs11950921	C	A	707.99	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=23.14;SOR=1.022;VQSLOD=17.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:499,36,0
chr5	178413816	rs2256966	T	C	18725.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.850e-01;DB;DP=384;ExcessHet=1.5490;FS=2.937;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.40;ReadPosRankSum=-7.330e-01;SOR=0.480;VQSLOD=23.32;culprit=MQ	GT:AD:DP:GQ:PL	0/1:203,181:384:99:4502,0,5184
chr5	178413947	rs11746675	T	C	14067.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.53;DB;DP=342;ExcessHet=1.5490;FS=1.256;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=0.053;SOR=0.818;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:180,162:342:99:4244,0,4526
chr5	178414565	rs2645340	C	T	5310.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.640e-01;DB;DP=58;ExcessHet=3.0103;FS=1.707;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.10;ReadPosRankSum=0.578;SOR=0.954;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,58:58:99:1958,174,0
chr5	178415937	rs2067011	A	G	910.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.581e+00;DB;DP=14;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.97;ReadPosRankSum=-8.560e-01;SOR=0.420;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,3:14:70:70,0,408
chr5	178415982	rs4701014	A	G	5526.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=48;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.54;SOR=3.258;VQSLOD=21.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,48:48:99:1612,144,0
chr5	178416063	rs2645339	G	A	6093.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.000e-02;DB;DP=122;ExcessHet=1.5490;FS=6.984;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.23;ReadPosRankSum=0.435;SOR=0.622;VQSLOD=22.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,60:122:99:1338,0,1414
chr5	178416203	rs143495088	CCCCTCCCCA	C	2844.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-8.980e-01;DB;DP=31;ExcessHet=1.5490;FS=0.000;MQ=59.94;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.08;ReadPosRankSum=1.01;SOR=0.823;VQSLOD=7.05;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:7,24:31:99:786,0,185
chr5	178416288	rs2071246	G	A	4057.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.159;DB;DP=51;ExcessHet=3.0103;FS=2.911;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.74;ReadPosRankSum=-1.190e-01;SOR=0.314;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,51:51:99:1788,153,0
chr5	178418302	rs77690756	T	TG	803.95	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.265;DB;DP=17;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=21.16;ReadPosRankSum=-3.430e-01;SOR=2.073;VQSLOD=5.59;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:10,7:17:99:167,0,261
chr5	178419148	rs372559202	AG	A	2127.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.000e-03;DB;DP=93;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=22.87;ReadPosRankSum=1.02;SOR=0.703;VQSLOD=5.98;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:39,54:93:99:0|1:178419148_AG_A:2136,0,2135:178419148
chr5	178419155	.	C	T	2160.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.991e+00;DP=93;ExcessHet=3.0103;FS=1.840;MQ=60.00;MQRankSum=0.00;QD=23.23;ReadPosRankSum=0.102;SOR=0.488;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:38,55:93:99:0|1:178419148_AG_A:2169,0,2153:178419148
chr5	178419279	rs11283410	G	GGGCAAGGTCT	14114.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.67;SOR=1.159;VQSLOD=6.07;culprit=SOR	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,81:81:99:1|1:178419279_G_GGGCAAGGTCT:4246,286,0:178419279
chr5	178419288	rs2645335	C	T	13885.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=95;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.32;SOR=1.387;VQSLOD=21.18;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,95:95:99:1|1:178419279_G_GGGCAAGGTCT:4188,286,0:178419279
chr5	178419396	rs11449973	A	AC	13158.73	PASS	AC=2;AF=1.00;AN=2;DB;DP=137;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=0.718;VQSLOD=6.18;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,137:137:99:4372,412,0
chr5	178421269	rs2856359	G	T	1224.68	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.99;SOR=2.964;VQSLOD=20.39;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:341,30,0
chr5	178421351	rs2645330	T	C	1456.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.587e+00;DB;DP=32;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.74;ReadPosRankSum=-9.260e-01;SOR=0.706;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,15:32:99:297,0,433
chr5	178421770	rs2645329	T	G	2846.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.05;DB;DP=82;ExcessHet=1.5490;FS=4.371;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.63;ReadPosRankSum=-2.157e+00;SOR=1.112;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,33:82:99:773,0,1098
chr5	178422083	rs1078978	C	T	91.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.777;DB;DP=14;ExcessHet=3.0103;FS=2.363;MQ=60.00;MQRankSum=0.00;QD=6.52;ReadPosRankSum=1.31;SOR=1.675;VQSLOD=20.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,5:14:99:100,0,194
chr5	178452211	.	C	CT	195.54	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.345;DP=12;ExcessHet=6.9897;FS=2.612;MQ=60.00;MQRankSum=0.00;QD=3.69;ReadPosRankSum=1.43;SOR=1.477;VQSLOD=4.85;culprit=QD	GT:AD:DP:GQ:PL	0/1:4,6:12:68:133,0,68
chr5	178454887	rs3932173	T	C	793.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.370e-01;DB;DP=10;ExcessHet=6.9897;FS=4.199;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.46;ReadPosRankSum=-8.000e-01;SOR=1.908;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:170,0,103
chr5	178455198	rs10464075	G	A	518.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.680e+00;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.97;ReadPosRankSum=-2.099e+00;SOR=0.756;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,21:52:99:527,0,910
chr5	178489208	rs190551374	G	A	1356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.830e+00;DB;DP=119;ExcessHet=3.0103;FS=4.671;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.40;ReadPosRankSum=-7.320e-01;SOR=0.376;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:63,56:119:99:1365,0,1808
chr5	178503220	rs17666172	T	C	274.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.810e-01;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.93;ReadPosRankSum=-2.093e+00;SOR=1.802;VQSLOD=23.07;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,8:11:89:283,0,89
chr5	178504199	rs57002947	G	A	696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DB;DP=35;ExcessHet=3.0103;FS=4.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.89;ReadPosRankSum=-5.000e-02;SOR=0.117;VQSLOD=22.92;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,18:35:99:0|1:178504199_G_A:705,0,1033:178504199
chr5	178504201	rs60369225	T	G	696.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.459e+00;DB;DP=35;ExcessHet=3.0103;FS=4.715;MQ=60.00;MQRankSum=0.00;QD=19.89;ReadPosRankSum=-3.300e-02;SOR=0.117;VQSLOD=21.52;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:17,18:35:99:0|1:178504199_G_A:705,0,1033:178504199
chr5	178507004	rs149489106	A	G	1307.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.762;DB;DP=108;ExcessHet=3.0103;FS=11.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.10;ReadPosRankSum=-2.824e+00;SOR=1.619;VQSLOD=16.15;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:55,53:108:99:1316,0,1265
chr5	178507069	rs1445846	T	C	4139.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.09;DB;DP=50;ExcessHet=3.9794;FS=0.786;MQ=59.91;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.07;ReadPosRankSum=-8.000e-03;SOR=0.811;VQSLOD=7.01;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,50:50:99:1903,149,0
chr5	178507090	rs1445845	G	A	3269.94	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.88;DB;DP=37;ExcessHet=3.9794;FS=7.232;MQ=59.89;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.59;ReadPosRankSum=-4.600e-02;SOR=1.578;VQSLOD=5.86;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1434,111,0
chr5	178540975	rs1054480	G	A	2043.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.200e-01;DB;DP=165;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.38;ReadPosRankSum=-1.650e-01;SOR=0.725;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:84,81:165:99:2052,0,2114
chr5	178548514	rs2303640	G	C	1233.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.685e+00;DB;DP=67;ExcessHet=3.0103;FS=1.932;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.41;ReadPosRankSum=0.249;SOR=0.263;VQSLOD=22.87;culprit=MQ	GT:AD:DP:GQ:PL	0/1:27,40:67:99:1242,0,927
chr5	178549791	rs2303641	G	A	2540.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.23;DB;DP=182;ExcessHet=3.0103;FS=1.159;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.96;ReadPosRankSum=-2.120e-01;SOR=0.588;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:81,101:182:99:2549,0,1716
chr5	178552956	rs2303642	T	C	1029.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.258e+00;DB;DP=64;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.08;ReadPosRankSum=-2.700e-02;SOR=0.564;VQSLOD=22.85;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,35:64:99:1038,0,832
chr5	178553185	rs2303643	G	A	4077.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.748;DB;DP=104;ExcessHet=6.9897;FS=0.481;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.36;ReadPosRankSum=0.549;SOR=0.636;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,47:104:99:1260,0,1442
chr5	178553341	rs6601018	T	C	642.93	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.894;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.95;ReadPosRankSum=1.44;SOR=1.708;VQSLOD=23.34;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,10:10:30:444,30,0
chr5	178557142	rs2251105	A	G	4049.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.702e+00;DB;DP=71;ExcessHet=6.9897;FS=0.000;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.78;ReadPosRankSum=0.575;SOR=0.698;VQSLOD=6.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:28,43:71:99:1103,0,802
chr5	178557292	rs2303645	C	T	44.28	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.20;DB;DP=9;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=4.92;ReadPosRankSum=-2.200e+00;SOR=0.132;VQSLOD=22.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,2:9:53:53,0,235
chr5	178559411	rs3822594	C	G	1172.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.03;DB;DP=91;ExcessHet=3.0103;FS=1.713;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.88;ReadPosRankSum=-9.600e-02;SOR=0.524;VQSLOD=23.22;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,49:91:99:1181,0,863
chr5	178563362	rs9286043	T	C	53.22	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=6;ExcessHet=3.0103;FS=3.310;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.87;ReadPosRankSum=-8.420e-01;SOR=2.303;VQSLOD=20.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:60:60,0,81
chr5	178564971	rs9286045	C	T	1106.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.776;DB;DP=95;ExcessHet=3.0103;FS=1.723;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.64;ReadPosRankSum=0.236;SOR=0.937;VQSLOD=22.61;culprit=MQ	GT:AD:DP:GQ:PL	0/1:52,43:95:99:1115,0,1411
chr5	178565052	rs9286046	C	T	544.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.066;DB;DP=47;ExcessHet=3.0103;FS=1.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.58;ReadPosRankSum=-2.038e+00;SOR=0.400;VQSLOD=22.18;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,22:47:99:553,0,717
chr5	178565121	rs888759	T	C	910.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=0.4576;FS=0.000;MQ=59.39;POSITIVE_TRAIN_SITE;QD=28.11;SOR=2.494;VQSLOD=3.76;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:927,72,0
chr5	178567054	rs2303638	A	G	1147.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.560e-01;DB;DP=104;ExcessHet=3.0103;FS=1.573;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.03;ReadPosRankSum=0.420;SOR=0.879;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:55,49:104:99:1156,0,1370
chr5	178579119	rs2303637	C	G	1331.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=103;ExcessHet=3.0103;FS=2.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.92;ReadPosRankSum=-9.780e-01;SOR=0.448;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,54:103:99:1340,0,1098
chr5	178581797	rs2278222	C	T	1605.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.883;DB;DP=155;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=-7.470e-01;SOR=0.665;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:87,68:155:99:1614,0,2132
chr5	178581859	rs2278221	G	A	1881.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.959;DB;DP=190;ExcessHet=3.0103;FS=0.537;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.90;ReadPosRankSum=0.794;SOR=0.769;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:107,83:190:99:1890,0,2613
chr5	178581977	rs4700784	G	A	1043.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.050e-01;DB;DP=67;ExcessHet=3.0103;FS=4.490;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.170;SOR=0.253;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,37:67:99:1052,0,909
chr5	178634619	rs423552	C	T	20135.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=220;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.32;SOR=0.761;VQSLOD=19.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,220:220:99:6624,660,0
chr5	178634672	rs398829	C	T	3450.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.255;DB;DP=189;ExcessHet=3.9794;FS=2.382;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.55;ReadPosRankSum=0.466;SOR=0.826;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:105,84:189:99:1846,0,2550
chr5	178768312	rs33897	C	T	201.15	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.96;DB;DP=6;ExcessHet=3.9794;FS=7.404;MQ=59.84;MQRankSum=0.00;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=16.76;ReadPosRankSum=0.598;SOR=3.912;VQSLOD=-1.031e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:73:103,0,73
chr5	178768505	rs33896	C	T	216.78	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.15;DB;DP=4;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=27.10;ReadPosRankSum=-3.190e-01;SOR=1.863;VQSLOD=21.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,3:4:32:112,0,32
chr5	178949560	rs28413987	A	G	16684.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=81;ExcessHet=3.0103;FS=0.000;MQ=54.07;QD=31.05;SOR=1.136;VQSLOD=1.40;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,81:81:99:1|1:178949560_A_G:3678,250,0:178949560
chr5	178949561	rs28408527	G	T	16684.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=83;ExcessHet=3.0103;FS=0.000;MQ=54.19;QD=34.60;SOR=1.101;VQSLOD=1.11;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,83:83:99:1|1:178949560_A_G:3678,250,0:178949560
chr5	178950263	rs34793499	GA	G	1596.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.35;DB;DP=20;ExcessHet=3.0103;FS=13.359;MQ=34.52;MQRankSum=0.947;POSITIVE_TRAIN_SITE;QD=24.20;ReadPosRankSum=-2.060e-01;SOR=2.847;VQSLOD=0.375;culprit=FS	GT:AD:DP:GQ:PL	0/1:14,6:20:99:136,0,395
chr5	178950607	rs114835164	G	A	59.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.842;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.88;ReadPosRankSum=-8.420e-01;SOR=1.179;VQSLOD=22.55;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,2:6:68:68,0,117
chr5	178951598	rs4701188	G	A	90778.69	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=1.08;DB;DP=817;ExcessHet=3.0103;FS=0.000;MQ=53.62;MQRankSum=1.85;NEGATIVE_TRAIN_SITE;POSITIVE_TRAIN_SITE;QD=32.97;ReadPosRankSum=-1.120e+00;SOR=0.923;VQSLOD=-1.970e+00;culprit=MQ	GT:AD:DP:GQ:PL	1/1:1,816:817:99:24857,2430,0
chr5	178952039	rs35678620	G	T	3405.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.847;DB;DP=280;ExcessHet=3.0103;FS=2.646;MQ=59.81;MQRankSum=1.38;POSITIVE_TRAIN_SITE;QD=12.16;ReadPosRankSum=1.75;SOR=0.552;VQSLOD=1.25;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:144,136:280:99:3414,0,3468
chr5	178977533	rs148210556	GCGCC	G	91.48	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.850e-01;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=15.25;ReadPosRankSum=0.524;SOR=0.693;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:3,3:6:99:100,0,134
chr5	178986978	rs7704349	C	G	5042.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.527;DB;DP=43;ExcessHet=3.0103;FS=1.052;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.20;ReadPosRankSum=0.308;SOR=0.999;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:18,25:43:99:0|1:178986978_C_G:729,0,731:178986978
chr5	178986987	rs12658664	C	T	633.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.114;DB;DP=52;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.18;ReadPosRankSum=0.019;SOR=0.741;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:30,22:52:99:1|0:178986978_C_G:642,0,1150:178986978
chr5	178989386	rs28611242	A	G	727.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=26;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=27.97;SOR=1.022;VQSLOD=19.27;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,26:26:78:744,78,0
chr5	178989473	rs28510162	T	G	1414.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=49;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=28.86;SOR=0.909;VQSLOD=19.61;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,49:49:99:1431,146,0
chr5	178996131	rs71591426	C	CAG	253.58	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=25.59;SOR=2.303;VQSLOD=4.02;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,6:6:18:270,18,0
chr5	178996435	rs11743261	A	G	2919.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=94;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.05;SOR=0.826;VQSLOD=20.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,94:94:99:2936,282,0
chr5	179012968	rs13361148	A	G	2564.10	PASS	AC=2;AF=1.00;AN=2;DB;DP=85;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.17;SOR=0.922;VQSLOD=20.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,85:85:99:2581,255,0
chr5	179016664	rs6895677	A	T	506.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.180e-01;DB;DP=41;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.35;ReadPosRankSum=0.222;SOR=0.555;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,22:41:99:515,0,451
chr5	179019001	rs113212670	C	T	63.43	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.71;SOR=2.303;VQSLOD=21.58;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:76,6,0
chr5	179020622	rs4701135	T	C	1406.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.470e-01;DB;DP=76;ExcessHet=3.0103;FS=11.092;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.50;ReadPosRankSum=0.959;SOR=0.150;VQSLOD=18.31;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,50:76:99:1415,0,730
chr5	179021982	rs28685239	G	A	6350.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.280e-01;DB;DP=90;ExcessHet=3.0103;FS=4.898;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.10;ReadPosRankSum=1.16;SOR=1.099;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:49,41:90:99:1044,0,1266
chr5	179022113	rs28410430	G	A	1614.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.750e-01;DB;DP=21;ExcessHet=3.0103;FS=2.265;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=27.84;ReadPosRankSum=0.427;SOR=1.872;VQSLOD=22.71;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,9:21:99:232,0,366
chr5	179023274	rs78750408	A	G	50.30	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.06;ReadPosRankSum=0.842;SOR=1.609;VQSLOD=22.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,2:5:59:59,0,70
chr5	179025550	rs4701136	A	G	822.47	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=26.29;SOR=3.160;VQSLOD=21.25;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:308,24,0
chr5	179025789	rs72824522	G	A	482.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.806;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.92;ReadPosRankSum=-9.590e-01;SOR=1.234;VQSLOD=23.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,16:22:99:491,0,103
chr5	179032755	rs6877888	C	T	3779.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=36;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.05;SOR=2.411;VQSLOD=20.99;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,36:36:99:1148,108,0
chr5	179033094	rs4701139	G	A	1117.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=7;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.45;SOR=5.283;VQSLOD=22.31;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,7:7:21:297,21,0
chr5	179034260	rs4701140	G	A	101.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=3;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=2.833;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:116,9,0
chr5	179034368	rs72824531	G	A	185.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.680e-01;DB;DP=21;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.82;ReadPosRankSum=0.935;SOR=0.175;VQSLOD=22.57;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,6:21:99:194,0,582
chr5	179034707	rs72824532	C	T	414.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.22;DB;DP=40;ExcessHet=3.0103;FS=1.603;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.36;ReadPosRankSum=0.797;SOR=1.022;VQSLOD=22.48;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,15:40:99:423,0,670
chr5	179036207	.	C	CA	1359.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.06;DP=11;ExcessHet=3.0103;FS=0.000;MQ=59.39;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.98;ReadPosRankSum=0.00;SOR=5.376;VQSLOD=7.35;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,4:11:31:81,0,31
chr5	179036357	rs7448707	G	A	1896.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.603;DB;DP=147;ExcessHet=3.0103;FS=2.985;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.90;ReadPosRankSum=0.534;SOR=0.492;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,81:147:99:1905,0,1427
chr5	179036608	rs8087	T	A	5240.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.58;DB;DP=60;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.83;ReadPosRankSum=0.873;SOR=0.894;VQSLOD=23.10;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,34:60:99:1089,0,702
chr5	179041785	.	GAAAAA	G,GAAAA	1374.26	PASS	AC=1,1;AF=0.500,0.500;AN=2;BaseQRankSum=0.444;DP=14;ExcessHet=3.0103;FS=0.000;MQ=59.25;MQRankSum=0.00;QD=31.96;ReadPosRankSum=-1.013e+00;SOR=1.148;VQSLOD=5.66;culprit=MQRankSum	GT:AD:DP:GQ:PL	1/2:1,6,3:14:51:357,51,152,298,0,290
chr5	179042971	rs4376229	A	G	356.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.63;DB;DP=22;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.19;ReadPosRankSum=1.12;SOR=0.540;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,10:22:99:365,0,397
chr5	179043041	rs4256313	C	G	1152.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=5.84;DB;DP=72;ExcessHet=3.0103;FS=2.580;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.00;ReadPosRankSum=-1.023e+00;SOR=1.233;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:39,33:72:99:1161,0,1065
chr5	179043075	rs4515257	T	C	11682.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=115;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.67;SOR=1.833;VQSLOD=21.71;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,115:115:99:3899,345,0
chr5	179045142	rs4701143	G	A	1495.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.82;DB;DP=98;ExcessHet=3.0103;FS=5.100;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.26;ReadPosRankSum=-2.287e+00;SOR=1.044;VQSLOD=22.73;culprit=MQ	GT:AD:DP:GQ:PL	0/1:42,56:98:99:1504,0,997
chr5	179048205	rs4701144	T	C	1082.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.250e-01;DB;DP=99;ExcessHet=3.0103;FS=2.747;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.93;ReadPosRankSum=0.099;SOR=0.424;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:57,42:99:99:1091,0,1539
chr5	179049138	rs4301193	C	A	1931.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=35.26;SOR=4.935;VQSLOD=18.59;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,12:12:36:488,36,0
chr5	179050188	rs1136267	A	C	2004.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.480e-01;DB;DP=185;ExcessHet=3.0103;FS=2.610;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.83;ReadPosRankSum=-9.610e-01;SOR=0.503;VQSLOD=23.08;culprit=MQ	GT:AD:DP:GQ:PL	0/1:96,89:185:99:2013,0,2302
chr5	179069309	rs6887611	G	C	21322.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=177;ExcessHet=3.0103;FS=0.000;MQ=53.11;QD=33.06;SOR=1.979;VQSLOD=1.91;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,177:177:99:5639,530,0
chr5	179069912	rs75942553	C	T	7092.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.479e+00;DB;DP=610;ExcessHet=3.0103;FS=0.522;MQ=59.85;MQRankSum=-9.680e-01;POSITIVE_TRAIN_SITE;QD=11.63;ReadPosRankSum=-7.020e-01;SOR=0.631;VQSLOD=1.78;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:323,287:610:99:7101,0,8710
chr5	179070675	rs10067131	C	G	1153.62	PASS	AC=2;AF=1.00;AN=2;DB;DP=10;ExcessHet=3.0103;FS=0.000;MQ=59.90;POSITIVE_TRAIN_SITE;QD=31.78;SOR=5.353;VQSLOD=6.50;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,10:10:30:394,30,0
chr5	179070894	rs78109239	A	G	430.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.26;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.68;ReadPosRankSum=-9.410e-01;SOR=1.179;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,12:15:81:439,0,81
chr5	179071724	rs2411400	C	T	589.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.420e-01;DB;DP=122;ExcessHet=3.0103;FS=5.550;MQ=48.52;MQRankSum=-3.831e+00;QD=4.83;ReadPosRankSum=-8.790e-01;SOR=1.563;VQSLOD=-3.356e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:95,27:122:99:598,0,2909
chr5	179071866	rs4990390	A	G	3266.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=4.37;DB;DP=445;ExcessHet=3.0103;FS=1.917;MQ=59.94;MQRankSum=-1.308e+00;POSITIVE_TRAIN_SITE;QD=7.34;ReadPosRankSum=1.17;SOR=0.865;VQSLOD=1.00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:305,140:445:99:3275,0,7759
chr5	179071947	rs4645306	A	G	1977.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.55;DB;DP=422;ExcessHet=3.0103;FS=1.312;MQ=59.36;MQRankSum=-4.406e+00;NEGATIVE_TRAIN_SITE;QD=4.69;ReadPosRankSum=1.26;SOR=0.837;VQSLOD=-2.787e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:316,106:422:99:1986,0,8134
chr5	179072006	rs13153811	A	G	1125.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.83;DB;DP=221;ExcessHet=3.0103;FS=1.439;MQ=58.04;MQRankSum=-5.275e+00;QD=5.09;ReadPosRankSum=-1.660e+00;SOR=0.853;VQSLOD=-3.187e+00;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:169,52:221:99:1134,0,4818
chr5	179072140	rs376117279	G	A	34.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.415e+00;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=45.47;MQRankSum=-2.385e+00;QD=1.71;ReadPosRankSum=-6.900e-01;SOR=0.048;VQSLOD=-3.783e+00;culprit=MQ	GT:AD:DP:GQ:PL	0/1:17,3:20:43:43,0,636
chr5	179078391	rs57380196	C	T	803.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.461e+00;DB;DP=48;ExcessHet=3.0103;FS=4.715;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.73;ReadPosRankSum=-2.371e+00;SOR=0.246;VQSLOD=22.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:21,27:48:99:812,0,770
chr5	179078940	rs6882398	T	C	49648.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=753;ExcessHet=3.0103;FS=0.000;MQ=55.14;POSITIVE_TRAIN_SITE;QD=32.30;SOR=0.990;VQSLOD=1.98;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,753:753:99:23963,2258,0
chr5	179105533	rs75628693	G	C	2718.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.910e-01;DB;DP=217;ExcessHet=3.0103;FS=1.739;MQ=59.92;MQRankSum=1.01;POSITIVE_TRAIN_SITE;QD=12.53;ReadPosRankSum=0.422;SOR=0.848;VQSLOD=2.23;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:109,108:217:99:2727,0,2749
chr5	179126090	rs1134924	C	T	1351.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.980e-01;DB;DP=23;ExcessHet=3.9794;FS=3.564;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.04;ReadPosRankSum=0.466;SOR=0.329;VQSLOD=22.93;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,13:23:99:269,0,288
chr5	179133087	rs72809763	T	C	280.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.158e+00;DB;DP=27;ExcessHet=3.0103;FS=3.565;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.38;ReadPosRankSum=0.146;SOR=0.239;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,13:27:99:289,0,362
chr5	179133608	rs10903245	T	C	164.60	PASS	AC=2;AF=1.00;AN=2;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=30.33;SOR=3.258;VQSLOD=20.84;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:176,12,0
chr5	179135071	rs10063824	T	C	628.01	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.58;SOR=5.670;VQSLOD=21.92;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:253,18,0
chr5	179136138	rs6601068	A	G	6016.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=37;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=23.88;SOR=2.908;VQSLOD=20.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,37:37:99:1427,111,0
chr5	179147641	rs59666900	C	T	1068.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.235e+00;DB;DP=39;ExcessHet=3.9794;FS=1.925;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.74;ReadPosRankSum=0.343;SOR=0.473;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:26,13:39:99:276,0,723
chr5	179149800	rs72809771	T	C	941.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.360e-01;DB;DP=55;ExcessHet=3.0103;FS=4.223;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.11;ReadPosRankSum=-2.630e-01;SOR=0.264;VQSLOD=22.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,35:55:99:950,0,517
chr5	179153797	rs7734102	C	T	1826.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.567e+00;DB;DP=67;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.94;ReadPosRankSum=-7.890e-01;SOR=0.643;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:32,35:67:99:888,0,883
chr5	179155809	rs72809773	G	A	586.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.840e-01;DB;DP=40;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.428;SOR=0.818;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:16,24:40:99:595,0,385
chr5	179192580	rs113636707	G	A	915.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.260;DB;DP=89;ExcessHet=3.0103;FS=0.000;MQ=59.88;MQRankSum=0.906;QD=10.28;ReadPosRankSum=0.124;SOR=0.743;VQSLOD=0.706;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:50,39:89:99:924,0,1277
chr5	179201847	rs6895902	G	A	3101.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.800e-01;DB;DP=127;ExcessHet=3.9794;FS=3.838;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.31;ReadPosRankSum=-1.274e+00;SOR=0.476;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:59,68:127:99:1665,0,1475
chr5	179218557	rs6871140	A	G	664.38	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=34.97;SOR=2.948;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:203,18,0
chr5	179218577	.	GA	G	113.23	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.67;DP=7;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=7.55;ReadPosRankSum=1.86;SOR=1.802;VQSLOD=4.73;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,3:7:49:54,0,49
chr5	179218842	rs55654737	G	A	4008.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.81;DB;DP=155;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.77;ReadPosRankSum=-4.500e-02;SOR=0.695;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,88:155:99:2098,0,1409
chr5	179222930	rs188919983	T	C	1857.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.65;DB;DP=147;ExcessHet=3.0103;FS=3.890;MQ=60.00;MQRankSum=0.00;QD=12.63;ReadPosRankSum=0.064;SOR=0.449;VQSLOD=21.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:67,80:147:99:1866,0,1330
chr5	179225324	rs2291418	G	A	3113.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.270e-01;DB;DP=228;ExcessHet=3.0103;FS=3.790;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.65;ReadPosRankSum=-3.510e-01;SOR=0.950;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:111,117:228:99:3122,0,2944
chr5	179225480	rs2291417	G	A	3348.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.05;DB;DP=268;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.49;ReadPosRankSum=0.237;SOR=0.686;VQSLOD=23.25;culprit=MQ	GT:AD:DP:GQ:PL	0/1:130,138:268:99:3357,0,2984
chr5	179225811	rs41285559	C	T	171.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.57;ReadPosRankSum=0.263;SOR=0.368;VQSLOD=22.86;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,6:11:99:180,0,164
chr5	179226464	rs66995745	C	T	1051.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.04;DB;DP=84;ExcessHet=3.0103;FS=7.454;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.51;ReadPosRankSum=-9.940e-01;SOR=1.043;VQSLOD=21.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:51,33:84:99:1060,0,1418
chr5	179227099	rs10062634	G	C	1669.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.77;DB;DP=130;ExcessHet=3.0103;FS=2.237;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.84;ReadPosRankSum=-1.078e+00;SOR=0.501;VQSLOD=22.59;culprit=MQ	GT:AD:DP:GQ:PL	0/1:71,59:130:99:1678,0,1920
chr5	179228150	rs58773990	G	A	315.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.882;DB;DP=20;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.76;ReadPosRankSum=0.605;SOR=0.412;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,10:20:99:324,0,341
chr5	179228377	rs113756550	G	A	2299.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.222;DB;DP=210;ExcessHet=3.0103;FS=1.112;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.95;ReadPosRankSum=-2.320e-01;SOR=0.583;VQSLOD=22.79;culprit=MQ	GT:AD:DP:GQ:PL	0/1:113,97:210:99:2308,0,2818
chr5	179228893	rs11547064	G	C	3993.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.310e-01;DB;DP=344;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.61;ReadPosRankSum=1.22;SOR=0.715;VQSLOD=22.52;culprit=MQ	GT:AD:DP:GQ:PL	0/1:182,162:344:99:4002,0,4616
chr5	179229151	rs58413676	A	G	1957.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.918e+00;DB;DP=151;ExcessHet=3.0103;FS=1.457;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.96;ReadPosRankSum=0.972;SOR=0.556;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,75:151:99:1966,0,2042
chr5	179251475	rs55993594	T	G	1954.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.624;DB;DP=40;ExcessHet=6.9897;FS=6.005;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.27;ReadPosRankSum=-1.460e-01;SOR=0.081;VQSLOD=22.16;culprit=MQ	GT:AD:DP:GQ:PL	0/1:19,21:40:99:616,0,647
chr5	179252052	rs11948610	G	A	434.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.395;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.48;ReadPosRankSum=0.499;SOR=0.941;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,16:30:99:443,0,378
chr5	179252265	rs75363646	C	A	181.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.84;DB;DP=15;ExcessHet=3.0103;FS=6.410;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.08;ReadPosRankSum=0.228;SOR=2.833;VQSLOD=17.36;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:190,0,214
chr5	179259835	rs55714456	T	C	76.54	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;QD=29.95;SOR=0.693;VQSLOD=18.74;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,2:2:6:1|1:179259835_T_C:90,6,0:179259835
chr5	179259842	rs2450484	G	C	468.26	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.00;DB;DP=3;ExcessHet=3.0103;FS=3.468;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.27;ReadPosRankSum=-1.415e+00;SOR=2.303;VQSLOD=21.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,3:3:9:1|1:179259835_T_C:133,9,0:179259835
chr5	179260153	rs4935	C	T	5245.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=109;ExcessHet=3.9794;FS=3.749;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.24;ReadPosRankSum=-9.000e-03;SOR=0.898;VQSLOD=23.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:62,47:109:99:1085,0,1408
chr5	179260213	rs4797	G	A	3141.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.340e-01;DB;DP=57;ExcessHet=3.9794;FS=1.304;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.65;ReadPosRankSum=-9.350e-01;SOR=0.813;VQSLOD=23.26;culprit=MQ	GT:AD:DP:GQ:PL	0/1:35,22:57:99:567,0,956
chr5	179260331	rs269446	C	G	126.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.850e-01;DB;DP=13;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.71;ReadPosRankSum=1.07;SOR=0.283;VQSLOD=22.54;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:135,0,268
chr5	179260478	rs2241350	C	G	705.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.06;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.04;ReadPosRankSum=0.817;SOR=0.693;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:14,18:32:99:0|1:179260478_C_G:714,0,805:179260478
chr5	179260494	rs155787	G	A	2550.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.38;DB;DP=37;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.26;ReadPosRankSum=0.982;SOR=0.647;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:16,21:37:99:0|1:179260478_C_G:787,0,865:179260478
chr5	179260865	rs61480353	CAGA	C	112.53	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=5;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.51;ReadPosRankSum=0.524;SOR=1.022;VQSLOD=7.50;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,3:5:96:120,0,96
chr5	179264132	rs1060271	T	G	525.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.93;DB;DP=50;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=10.51;ReadPosRankSum=0.050;SOR=0.743;VQSLOD=22.82;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,20:50:99:534,0,773
chr5	179264731	rs10277	T	C	7444.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.790e-01;DB;DP=144;ExcessHet=3.9794;FS=5.432;MQ=59.98;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=-3.140e-01;SOR=0.486;VQSLOD=7.29;culprit=MQ	GT:AD:DP:GQ:PL	0/1:68,76:144:99:1938,0,1689
chr5	179264915	rs1065154	G	T	2110.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.52;DB;DP=38;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.32;ReadPosRankSum=0.251;SOR=0.712;VQSLOD=23.44;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,16:38:99:438,0,613
chr5	179267949	rs248248	T	C	9325.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-3.360e+00;DB;DP=131;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.14;ReadPosRankSum=-2.030e-01;SOR=0.693;VQSLOD=23.36;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,131:131:99:4013,393,0
chr5	179269193	rs72813734	G	A	248.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.812;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.69;ReadPosRankSum=0.312;SOR=1.022;VQSLOD=23.04;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:257,0,171
chr5	179278561	rs72813740	G	A	498.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=21;ExcessHet=3.0103;FS=5.566;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.73;ReadPosRankSum=0.454;SOR=0.105;VQSLOD=22.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,16:21:99:507,0,136
chr5	179278685	rs60356119	A	T	67.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=2;ExcessHet=0.4576;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.79;SOR=2.303;VQSLOD=20.72;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,2:2:6:81,6,0
chr5	179280379	rs1650893	T	C	2948.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.520e-01;DB;DP=35;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.90;ReadPosRankSum=0.942;SOR=0.683;VQSLOD=23.35;culprit=MQ	GT:AD:DP:GQ:PL	0/1:18,17:35:99:430,0,492
chr5	179287576	rs248254	C	G	11135.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.21;DB;DP=159;ExcessHet=3.9794;FS=0.537;MQ=60.00;MQRankSum=0.00;QD=23.79;ReadPosRankSum=0.234;SOR=0.663;VQSLOD=21.63;culprit=MQ	GT:AD:DP:GQ:PL	0/1:77,82:159:99:2186,0,1924
chr5	179291279	rs172056	A	G	1046.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.022e+00;DB;DP=19;ExcessHet=6.9897;FS=6.179;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.36;ReadPosRankSum=0.187;SOR=2.774;VQSLOD=18.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:12,7:19:99:240,0,407
chr5	179292010	rs30385	T	C	439.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.792;DB;DP=8;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=15.71;ReadPosRankSum=0.282;SOR=0.922;VQSLOD=23.11;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,2:8:58:58,0,190
chr5	179295060	rs30384	T	C	61.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.670e-01;DB;DP=3;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.39;ReadPosRankSum=0.00;SOR=1.179;VQSLOD=23.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:1,2:3:32:67,0,32
chr5	179297268	rs72813746	G	A	2343.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.175e+00;DB;DP=183;ExcessHet=3.0103;FS=5.202;MQ=59.99;MQRankSum=1.12;POSITIVE_TRAIN_SITE;QD=12.80;ReadPosRankSum=1.02;SOR=0.471;VQSLOD=1.98;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:82,101:183:99:2352,0,1922
chr5	179298342	rs248252	G	C	3797.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-7.850e-01;DB;DP=34;ExcessHet=3.0103;FS=2.017;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.21;ReadPosRankSum=-7.780e-01;SOR=1.081;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,34:34:99:1157,102,0
chr5	179299867	rs532795	T	C	1839.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.126e+00;DB;DP=48;ExcessHet=3.9794;FS=3.778;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=19.17;ReadPosRankSum=0.049;SOR=0.910;VQSLOD=23.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,18:48:99:456,0,530
chr5	179302921	rs61739270	C	T	845.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.408;DB;DP=61;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.86;ReadPosRankSum=0.549;SOR=0.829;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:29,32:61:99:854,0,786
chr5	179305655	rs3734003	C	T	1536.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.901e+00;DB;DP=30;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.89;ReadPosRankSum=1.87;SOR=0.671;VQSLOD=23.03;culprit=MQ	GT:AD:DP:GQ:PL	0/1:23,7:30:99:190,0,818
chr5	179306333	rs17079730	A	G	664.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=30;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.14;ReadPosRankSum=1.43;SOR=0.593;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:10,20:30:99:673,0,275
chr5	179306490	rs567750	A	G	182.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.823e+00;DB;DP=10;ExcessHet=3.0103;FS=14.771;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.23;ReadPosRankSum=-2.910e-01;SOR=3.897;VQSLOD=11.97;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,6:10:99:191,0,138
chr5	179321865	rs1684973	G	A	957.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.327;DB;DP=16;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.28;ReadPosRankSum=0.619;SOR=0.651;VQSLOD=23.38;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,9:16:99:286,0,178
chr5	179334857	rs185073	A	G	14090.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=168;ExcessHet=3.0103;FS=0.000;MQ=60.00;QD=31.88;SOR=1.675;VQSLOD=19.81;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,168:168:99:5270,504,0
chr5	179405399	rs27019	C	G	831.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.960e+00;DB;DP=6;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.28;ReadPosRankSum=-1.645e+00;SOR=3.528;VQSLOD=17.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,3:6:84:84,0,114
chr5	179407229	rs28011	C	T	12892.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=113;ExcessHet=3.0103;FS=0.000;MQ=59.97;POSITIVE_TRAIN_SITE;QD=33.84;SOR=2.151;VQSLOD=4.85;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,113:113:99:3660,337,0
chr5	179442524	rs66797381	AG	A	592.05	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-9.960e-01;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.68;ReadPosRankSum=-6.510e-01;SOR=1.609;VQSLOD=7.24;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:8,4:12:99:0|1:179442524_AG_A:107,0,249:179442524
chr5	179442551	rs62405016	G	A	643.02	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=58.13;QD=30.66;SOR=5.283;VQSLOD=3.77;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,6:6:18:1|1:179442524_AG_A:252,18,0:179442524
chr5	179498595	rs3749821	C	T	7519.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-5.470e-01;DB;DP=185;ExcessHet=1.5490;FS=5.244;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.01;ReadPosRankSum=-7.440e-01;SOR=1.016;VQSLOD=22.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:76,109:185:99:2427,0,1525
chr5	179498658	rs3828698	G	T	4574.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.333;DB;DP=101;ExcessHet=1.5490;FS=10.139;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=22.43;ReadPosRankSum=-2.920e-01;SOR=1.488;VQSLOD=18.67;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,51:101:99:1266,0,1173
chr5	179528351	rs34705746	TG	T	1603.07	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.610e-01;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=28.54;ReadPosRankSum=1.27;SOR=4.664;VQSLOD=1.55;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	1|1:0,12:12:36:1|1:179528351_TG_T:446,36,0:179528351
chr5	179528359	rs113499659	G	C	1123.91	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.895e+00;DB;DP=12;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=31.28;ReadPosRankSum=0.312;SOR=3.126;VQSLOD=21.00;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,7:12:99:0|1:179528351_TG_T:256,0,186:179528351
chr5	179528918	rs7724876	G	A	592.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.300e-02;DB;DP=23;ExcessHet=1.5490;FS=2.354;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.96;ReadPosRankSum=-1.167e+00;SOR=1.708;VQSLOD=23.37;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,14:23:99:442,0,215
chr5	179528991	.	TCCCACCTCGGCGCGAAGACTCACCTTAGAGCTTTCCATCCCAAGCAGCCCCCAGGC	T	1023.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.34;DP=48;ExcessHet=3.9794;FS=1.966;MQ=60.00;MQRankSum=0.00;QD=13.46;ReadPosRankSum=-2.170e-01;SOR=0.942;VQSLOD=5.93;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:33,15:48:99:532,0,1339
chr5	179529124	rs7725201	G	A	2567.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.993;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=21.76;ReadPosRankSum=3.41;SOR=0.747;VQSLOD=22.16;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:17,28:45:99:738,0,383
chr5	179541349	.	G	T	839.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-4.104e+00;DP=67;ExcessHet=3.0103;FS=2.612;MQ=60.00;MQRankSum=0.00;QD=12.53;ReadPosRankSum=-8.800e-02;SOR=0.327;VQSLOD=21.62;culprit=MQ	GT:AD:DP:GQ:PL	0/1:31,36:67:99:848,0,954
chr5	179545562	rs62405054	C	G	323.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.45;DB;DP=13;ExcessHet=3.9794;FS=9.040;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.54;ReadPosRankSum=1.97;SOR=3.456;VQSLOD=12.02;culprit=MQ	GT:AD:DP:GQ:PL	0/1:8,5:13:99:142,0,228
chr5	179546030	rs7732620	A	G	481.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.38;DB;DP=6;ExcessHet=6.9897;FS=2.093;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=20.95;ReadPosRankSum=0.210;SOR=1.609;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,3:6:99:0|1:179546030_A_G:106,0,209:179546030
chr5	179546031	rs7712019	G	A	481.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.530e-01;DB;DP=5;ExcessHet=6.9897;FS=1.971;MQ=60.00;MQRankSum=0.00;QD=22.95;ReadPosRankSum=0.702;SOR=1.329;VQSLOD=21.83;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:3,2:5:99:0|1:179546030_A_G:106,0,209:179546030
chr5	179546661	rs143887631	G	A	226.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.61;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=28.28;ReadPosRankSum=1.07;SOR=1.863;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:59:235,0,59
chr5	179547917	rs11249669	C	A	220.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.194e+00;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.57;ReadPosRankSum=1.28;SOR=0.346;VQSLOD=22.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,7:12:99:183,0,140
chr5	179548343	rs13160214	C	T	1421.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.445e+00;DB;DP=21;ExcessHet=6.9897;FS=2.535;MQ=59.89;MQRankSum=0.00;QD=18.71;ReadPosRankSum=-3.790e-01;SOR=0.380;VQSLOD=5.17;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:12,9:21:99:276,0,384
chr5	179548459	rs12652403	G	A	365.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.967;DB;DP=9;ExcessHet=3.9794;FS=4.634;MQ=59.54;MQRankSum=0.00;QD=20.33;ReadPosRankSum=0.589;SOR=1.981;VQSLOD=0.634;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:5,4:9:99:103,0,145
chr5	179554522	rs7728345	C	T	128.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=9.000e-03;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=8.55;ReadPosRankSum=-1.155e+00;SOR=0.646;VQSLOD=22.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:9,6:15:99:137,0,229
chr5	179555190	rs13354032	T	C	261.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.00;DB;DP=11;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.51;ReadPosRankSum=-8.420e-01;SOR=0.512;VQSLOD=22.72;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,4:11:99:125,0,254
chr5	179555407	rs13354066	T	C	1524.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.39;DB;DP=48;ExcessHet=3.9794;FS=1.581;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.66;ReadPosRankSum=0.320;SOR=0.862;VQSLOD=22.96;culprit=MQ	GT:AD:DP:GQ:PL	0/1:22,26:48:99:864,0,541
chr5	179555654	rs6895192	C	T	2397.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.166e+00;DB;DP=78;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=9.91;ReadPosRankSum=0.206;SOR=0.686;VQSLOD=23.09;culprit=MQ	GT:AD:DP:GQ:PL	0/1:46,32:78:99:647,0,1165
chr5	179563359	rs55638756	C	T	5331.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.98;DB;DP=175;ExcessHet=3.9794;FS=3.413;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.53;ReadPosRankSum=1.25;SOR=0.882;VQSLOD=22.65;culprit=MQ	GT:AD:DP:GQ:PL	0/1:86,89:175:99:2268,0,2283
chr5	179563435	rs11546322	T	C	7899.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=2.65;DB;DP=274;ExcessHet=3.9794;FS=0.517;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.30;ReadPosRankSum=-8.820e-01;SOR=0.662;VQSLOD=23.15;culprit=MQ	GT:AD:DP:GQ:PL	0/1:135,139:274:99:3409,0,2859
chr5	179563532	rs2890346	G	C	3449.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.273e+00;DB;DP=155;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=13.74;ReadPosRankSum=0.394;SOR=0.719;VQSLOD=22.99;culprit=MQ	GT:AD:DP:GQ:PL	0/1:78,77:155:99:1994,0,2043
chr5	179563633	rs1867454	T	G	1157.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.72;DB;DP=30;ExcessHet=3.9794;FS=5.982;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=17.02;ReadPosRankSum=0.804;SOR=1.872;VQSLOD=21.27;culprit=MQ	GT:AD:DP:GQ:PL	0/1:15,15:30:99:479,0,440
chr5	179563675	rs2890347	C	T	480.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.55;ReadPosRankSum=0.541;SOR=0.527;VQSLOD=22.78;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:211,0,191
chr5	179565071	rs4700878	G	C	2730.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.30;SOR=0.793;VQSLOD=20.83;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:72:792,72,0
chr5	179565136	rs4700715	C	A	3185.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=32;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.86;SOR=0.818;VQSLOD=21.22;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,32:32:96:1015,96,0
chr5	179565253	rs4700879	C	T	1948.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=24;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=29.98;SOR=1.539;VQSLOD=20.13;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,24:24:71:635,71,0
chr5	179663251	rs9605	G	A	1170.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.569e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.46;ReadPosRankSum=2.51;SOR=1.609;VQSLOD=23.01;culprit=MQ	GT:AD:DP:GQ:PL	0/1:3,7:10:99:244,0,99
chr5	179663614	rs6601104	C	T	2280.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-7.460e-01;DB;DP=27;ExcessHet=3.9794;FS=0.995;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=23.76;ReadPosRankSum=0.025;SOR=0.534;VQSLOD=23.30;culprit=MQ	GT:AD:DP:GQ:PL	0/1:11,16:27:99:447,0,314
chr5	179665201	rs56333381	C	T	725.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.756e+00;DB;DP=22;ExcessHet=3.9794;FS=0.000;MQ=59.66;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.80;ReadPosRankSum=0.479;SOR=1.066;VQSLOD=4.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:14,8:22:99:254,0,501
chr5	179665572	rs4700729	A	G	1459.57	PASS	AC=2;AF=1.00;AN=2;DB;DP=6;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=32.03;SOR=5.838;VQSLOD=22.26;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,6:6:18:237,18,0
chr5	179669833	rs35624369	T	G	337.17	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e+00;DB;DP=8;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.06;ReadPosRankSum=1.37;SOR=0.223;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:2,6:8:62:184,0,62
chr5	179686033	rs35532910	CA	C	500.88	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.100e-01;DB;DP=9;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=16.16;ReadPosRankSum=0.652;SOR=2.694;VQSLOD=6.18;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:2,7:9:22:145,0,22
chr5	179686378	rs33928286	G	A	6634.94	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.83;DB;DP=96;ExcessHet=3.9794;FS=1.388;MQ=59.99;MQRankSum=0.00;QD=20.17;ReadPosRankSum=1.21;SOR=0.633;VQSLOD=4.95;culprit=MQ	GT:AD:DP:GQ:PL	0/1:50,46:96:99:1227,0,1337
chr5	179707194	rs7715540	G	A	1705.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.125e+00;DB;DP=11;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.45;ReadPosRankSum=-8.000e-03;SOR=0.582;VQSLOD=22.51;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,7:11:99:221,0,123
chr5	179728707	rs4700931	T	C	1425.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.651;DB;DP=45;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.98;ReadPosRankSum=2.64;SOR=0.745;VQSLOD=22.47;culprit=MQ	GT:AD:DP:GQ:PL	0/1:20,25:45:99:582,0,443
chr5	179728860	rs4700932	A	C	317.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.345e+00;DB;DP=10;ExcessHet=3.9794;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.20;ReadPosRankSum=1.09;SOR=1.493;VQSLOD=22.80;culprit=MQ	GT:AD:DP:GQ:PL	0/1:5,5:10:99:104,0,145
chr5	179729328	rs1035412	C	T	323.13	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.58;DB;DP=10;ExcessHet=3.9794;FS=2.049;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.97;ReadPosRankSum=-1.870e-01;SOR=1.244;VQSLOD=23.24;culprit=MQ	GT:AD:DP:GQ:PL	0/1:7,3:10:85:85,0,218
chr5	179729519	rs1035411	A	G	3590.12	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.377;DB;DP=137;ExcessHet=3.9794;FS=0.913;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.78;ReadPosRankSum=-3.580e-01;SOR=0.778;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	0/1:72,65:137:99:1495,0,1655
chr5	179729625	rs2303005	A	G	1578.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.90;DB;DP=127;ExcessHet=3.0103;FS=4.267;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.43;ReadPosRankSum=0.413;SOR=0.423;VQSLOD=23.45;culprit=MQ	GT:AD:DP:GQ:PL	0/1:66,61:127:99:1587,0,1615
chr5	179731635	rs888922	C	G	394.37	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.623;DB;DP=3;ExcessHet=1.5490;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=30.34;ReadPosRankSum=1.00;SOR=2.147;VQSLOD=22.12;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,3:3:9:132,9,0
chr5	179734139	rs11741142	T	C	355.59	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.13;DB;DP=14;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=25.40;ReadPosRankSum=-1.378e+00;SOR=0.446;VQSLOD=21.36;culprit=MQ	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,9:14:99:0|1:179734139_T_C:363,0,894:179734139
chr5	179734145	rs372137778	GTGGGGGTGGGGGC	G	388.56	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-2.590e-01;DB;DP=15;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=25.90;ReadPosRankSum=-1.837e+00;SOR=0.527;VQSLOD=6.72;culprit=MQRankSum	GT:AD:DP:GQ:PGT:PID:PL:PS	0|1:5,10:15:99:0|1:179734139_T_C:397,0,891:179734139
chr5	179734312	rs3763131	T	C	1189.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.532;DB;DP=98;ExcessHet=3.0103;FS=0.763;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=12.14;ReadPosRankSum=-2.133e+00;SOR=0.854;VQSLOD=22.64;culprit=MQ	GT:AD:DP:GQ:PL	0/1:48,50:98:99:1198,0,1084
chr5	179740640	rs75050499	C	T	58.33	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.579e+00;DB;DP=7;ExcessHet=3.0103;FS=3.680;MQ=60.00;MQRankSum=0.00;QD=8.33;ReadPosRankSum=0.328;SOR=0.086;VQSLOD=21.66;culprit=MQ	GT:AD:DP:GQ:PL	0/1:4,3:7:67:67,0,134
chr5	179740827	rs2303007	T	C	376.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-6.770e-01;DB;DP=74;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=5.08;ReadPosRankSum=0.336;SOR=0.602;VQSLOD=22.70;culprit=MQ	GT:AD:DP:GQ:PL	0/1:53,21:74:99:385,0,1378
chr5	179743731	rs2303008	G	A	826.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.341;DB;DP=56;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=14.75;ReadPosRankSum=1.75;SOR=0.843;VQSLOD=23.05;culprit=MQ	GT:AD:DP:GQ:PL	0/1:25,31:56:99:835,0,623
chr5	179745607	rs2303009	A	G	218.26	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.27;DB;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=18.19;ReadPosRankSum=-3.070e-01;SOR=0.693;VQSLOD=23.42;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,6:12:99:227,0,215
chr5	179755071	rs200885267	CT	C	574.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.482;DB;DP=47;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=5.04;ReadPosRankSum=0.284;SOR=0.652;VQSLOD=5.53;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:27,10:47:99:122,0,636
chr5	179763398	rs6891083	T	G	5783.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=3.10;DB;DP=54;ExcessHet=3.0103;FS=1.045;MQ=59.99;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=31.78;ReadPosRankSum=-4.700e-01;SOR=0.941;VQSLOD=6.81;culprit=MQ	GT:AD:DP:GQ:PL	0/1:30,24:54:99:780,0,852
chr5	179765467	rs55946431	C	T	1281.89	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=1.18;DB;DP=15;ExcessHet=3.0103;FS=2.297;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.81;ReadPosRankSum=0.746;SOR=1.857;VQSLOD=22.83;culprit=MQ	GT:AD:DP:GQ:PL	0/1:6,9:15:99:266,0,136
chr5	179779339	.	G	GA	1361.16	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-3.050e-01;DP=54;ExcessHet=3.9794;FS=0.000;MQ=59.89;MQRankSum=0.00;QD=16.40;ReadPosRankSum=0.708;SOR=0.805;VQSLOD=6.02;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:15,12:54:99:174,0,324
chr5	179780292	rs199818683	CCTCCGTGGG	C	1244.93	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.869;DB;DP=29;ExcessHet=6.9897;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=11.86;ReadPosRankSum=-4.800e-02;SOR=0.752;VQSLOD=7.31;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:19,10:29:99:363,0,767
chr5	179780340	rs5873687	GT	G	3587.69	PASS	AC=2;AF=1.00;AN=2;DB;DP=27;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=31.24;SOR=1.364;VQSLOD=5.87;culprit=SOR	GT:AD:DP:GQ:PL	1/1:0,27:27:81:1091,81,0
chr5	179780382	.	A	AG	1256.65	PASS	AC=2;AF=1.00;AN=2;DP=12;ExcessHet=3.0103;FS=0.000;MQ=60.00;POSITIVE_TRAIN_SITE;QD=33.96;SOR=1.536;VQSLOD=4.72;culprit=QD	GT:AD:DP:GQ:PL	1/1:0,12:12:36:460,36,0
chr5	179780386	.	C	CG	151.07	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=0.891;DP=9;ExcessHet=3.0103;FS=2.354;MQ=60.00;MQRankSum=0.00;QD=6.04;ReadPosRankSum=1.44;SOR=1.708;VQSLOD=4.92;culprit=MQRankSum	GT:AD:DP:GQ:PL	0/1:4,5:9:99:136,0,103
chr5	179956197	rs71591495	C	CAA	447.17	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=2.16;DB;DP=9;ExcessHet=3.9794;FS=9.103;MQ=59.77;MQRankSum=0.00;QD=13.55;ReadPosRankSum=2.30;SOR=0.048;VQSLOD=2.61;culprit=FS	GT:AD:DP:GQ:PL	1/1:0,7:9:24:233,24,0
chr5	179980215	rs11738044	A	C	625.77	PASS	AC=2;AF=1.00;AN=2;DB;DP=8;ExcessHet=3.0103;FS=0.000;MQ=59.83;POSITIVE_TRAIN_SITE;QD=27.21;SOR=5.784;VQSLOD=5.37;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,8:8:24:278,24,0
chr5	179980302	rs10516143	T	A	3764.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-2.316e+00;DB;DP=45;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=29.41;ReadPosRankSum=0.549;SOR=0.847;VQSLOD=23.21;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,45:45:99:1623,135,0
chr5	179980527	rs11738129	A	G	9828.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.955;DB;DP=116;ExcessHet=3.0103;FS=1.578;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=24.57;ReadPosRankSum=0.305;SOR=0.836;VQSLOD=23.33;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,116:116:99:3692,347,0
chr5	179980711	rs11738199	A	G	793.54	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=0.778;DB;DP=4;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=33.06;ReadPosRankSum=0.091;SOR=2.925;VQSLOD=23.19;culprit=MQ	GT:AD:DP:GQ:PL	1/1:0,4:4:12:169,12,0
chr5	179991366	rs140883990	AGTCTGACATCTTACT	A	303.25	PASS	AC=1;AF=0.500;AN=2;BaseQRankSum=-1.471e+00;DB;DP=16;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;QD=18.95;ReadPosRankSum=-2.256e+00;SOR=0.180;VQSLOD=4.93;culprit=ReadPosRankSum	GT:AD:DP:GQ:PL	0/1:8,8:16:99:312,0,1161
chr5	179991841	rs6874985	A	G	1435.89	PASS	AC=2;AF=1.00;AN=2;BaseQRankSum=-1.489e+00;DB;DP=18;ExcessHet=3.0103;FS=0.000;MQ=60.00;MQRankSum=0.00;POSITIVE_TRAIN_SITE;QD=32.63